Citrus Sinensis ID: 036642

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------94
Protein Sequence
MSGVLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCSEHVSTPEDENGDEDELDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIRTDW
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHccccccccEEEccccccccccHHHHHHHcccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEccccccccccccccccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccEEccccccccccccEEEccccccEEccccccccccEEEcccccccccccHHHHHcccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccEEcccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcHHcccccccccccHHHHHHHHcccccccccEEEEEEEEEcccHHHHHcccccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccHHHccccccccccccHHHHccHcccEEEccccccccccccHHHcccccccEEEcccccccccccccHccccccEEEEccccccccccHHHHHccccccEEEccccccccccccHHHHccccccEEEEccccccccccccccccccccEEEEccccccccccccHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccHHcccccccEEEcccccccccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEccccccccccEEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccccccccccEEEEEccccccccccccccccEEEEccccccccccccHcccccccccccEEEEEccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccccccccEEEEEcccccccccccHHHHHcccccEEEEEccccccccccHHHHcccccEEEEcccccccccccHHHHcHHHHHHccccccccccccccccccccccHEEEHHHHHHccccccHHHHccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccHHHccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEcc
Coil and Loop (DISEMBL)
MSGVLVFAFLLFELLAIATVSVsfsngssyhvgcLESERRALLRFKQdlqdpsnrlaswigyedccawagvvcdnVTGHIVelnlrnpftycdlsqskanprsmlvgkvnpslldlkhlsyldlsyndfqgvqiprficsmgnlryLNLSYTqfvgmippqlgnlsnlqyldlswNFLYvenlwwlpglsflkdldlsYVNLSKASDWLRVTNTLPSLVKLRLsrcqlhhlpplaianfstLTTLDLLYnqfdnsfvpnwVFGLIQLVFLDLrrnnfqgpipeglQNLTSLKHllldsnrfnssipNWLYRFNRLeslgvsnnslqGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRgssvsghltyklgqfknlyyldlsnnsivgpipfslghlstlqFIDLSYNElngmndnwippfqlatlglrhchlgsrfpswlhsqkhlnyldlsysgitgsipnifwssaSQIYVLDLsfnqihgqipnltnAAQLEVLSlgsnsfsgalplissnlieldfsnnsisgsIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMildlsnnkftgnlpisLGSLISLQSLHLRKNNLSGTIHSLKNCTAlltldvgenefveniptwIGERFSRMVVLILRSNkfhsllpkglcdlAFLQIVDLadnnlsgevprCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDfsknnfsgkipleVTNLKAlqsfnlsnnfftgripesigAMRSLESIDFSLnqlsgeipqsmsslTYLNHLnlsnnnltgkipsstqlqsfdassyagndlcgaplprncsehvstpedengdedelDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIRTDW
Flexible Loop (DISEMBL)
MSGVLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLskasdwlrvTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCSEHVSTPEDENGDEDELDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNfldrvgdrivfvnirtdw
Low Complexity Region (SEG)
MSGvlvfafllfellaIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPslldlkhlsyldlsyNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNlpislgslislqslhlRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMssltylnhlnlsnnnlTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCSEHVSTPEDENGDEDELDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIRTDW
Disordered region (IsUnstruct)
***VLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQS****RSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLN************LTYLNHLNL*****************************************************LDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIR***
Disordered Region (DISOPRED)
***VLVFAFLLFELLAIATVSVSFSNGS*****CLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNS**GKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGA*************************WLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIRTDW
Disordered Region (DISEMBL)
MSGVLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCS************EDELDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIRTDW
Disordered Region (DISPRO)
MSGVLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCS*************DELDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIRTDW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGVLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCSEHVSTPEDENGDEDELDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIRTDW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	938	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.849	0.940	0.289	2e-75
Q9FL28	1173	LRR receptor-like serine/	no	no	0.795	0.635	0.278	1e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.811	0.609	0.303	3e-68
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.772	0.579	0.293	1e-60
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.722	0.615	0.286	2e-60
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.679	0.578	0.312	3e-56
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.771	0.607	0.279	4e-56
Q9LP24	1120	Probable leucine-rich rep	no	no	0.768	0.643	0.278	3e-55
O49318	1124	Probable leucine-rich rep	no	no	0.678	0.565	0.295	3e-54
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.642	0.504	0.294	1e-53

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  284 bits (726), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 276/953 (28%), Positives = 415/953 (43%), Gaps = 156/953 (16%)

Query: 2   SGVLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNR------ 55
           S +++F  LL   LA           SS H  C + +R ALL F+ +   P N       
Sbjct: 13  SRIIIFLSLLVHSLA----------SSSPHF-CRDDQRDALLEFRGEF--PINASWHIMN 59

Query: 56  --LASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSL 113
                W    DCC W GV C++ +G ++ L++ N F    L             K N SL
Sbjct: 60  QWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTFLNNYL-------------KTNSSL 106

Query: 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDL 173
             L++L                         R+L+L+     G IP  LGNLS+L  ++L
Sbjct: 107 FKLQYL-------------------------RHLDLTNCNLYGEIPSSLGNLSHLTLVNL 141

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
            +N              F+ ++  S  NL++    +   N L   +             P
Sbjct: 142 YFN-------------KFVGEIPASIGNLNQLRHLILANNVLTGEI-------------P 175

Query: 234 LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKH 293
            ++ N S L  L+L  N+     +P+ +  L QL  L L  NN  G IP  L NL++L H
Sbjct: 176 SSLGNLSRLVNLELFSNRLVGK-IPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVH 234

Query: 294 LLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEI 353
           L+L  N+    +P  +     L  +   NNSL G +  S A+L                 
Sbjct: 235 LVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANL----------------- 277

Query: 354 SEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413
                       + L I VL  ++ +    + +  F NL Y D+S NS  GP P SL  +
Sbjct: 278 ------------TKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLI 325

Query: 414 STLQFIDLSYNELNGMND--NWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
            +L+ I L  N+  G  +  N     +L  L L    L    P  +    +L  LD+S++
Sbjct: 326 PSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHN 385

Query: 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSN 531
             TG+IP    S    +  LDLS N + G++P      +L  + L  NSFS         
Sbjct: 386 NFTGAIPPTI-SKLVNLLHLDLSKNNLEGEVP--ACLWRLNTMVLSHNSFSSFENTSQEE 442

Query: 532 LI--ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ-NLMILD 588
            +  ELD ++NS  G I + IC    +L  L FL L  N   G +  C  N+  ++  L+
Sbjct: 443 ALIEELDLNSNSFQGPIPYMIC----KLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELN 498

Query: 589 LSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPT 647
           L +N F+G LP        L SL +  N L G    SL NC AL  ++V  N+  +  P+
Sbjct: 499 LGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPS 558

Query: 648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAF--LQIVDLADNNLSGEVPRC-IHNLRAM 704
           W+ E    + VL LRSNKF+  L      + F  L+I+D++ NN SG +P     N + M
Sbjct: 559 WL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDM 617

Query: 705 VTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNF 764
            TL     + +  +F  YA           +  +V KG    ++ I    R IDFS N  
Sbjct: 618 TTLTEEMDQYMT-EFWRYADS------YYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKI 670

Query: 765 SGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT 824
           +G IP  +  LK L+  NLS N FT  IP  +  +  LE++D S N+LSG+IPQ +++L+
Sbjct: 671 NGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALS 730

Query: 825 YLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-------DLCGAPLPRNCSEHVSTPED 877
           +L+++N S+N L G +P  TQ Q    SS+  N       D+C      N +  +  PED
Sbjct: 731 FLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQL--PED 788

Query: 878 ENGDEDELDYWLYVSIALGFMGGFWC--LIGPLLASRRWRYKYYNFLDRVGDR 928
            +  E+ +  W+  +IA G   G  C  +IG    S    +    F ++ G +
Sbjct: 789 LSEAEENMFNWVAAAIAYG--PGVLCGLVIGHFYTSHNHEW----FTEKFGRK 835

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  261 bits (668), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 249/895 (27%), Positives = 387/895 (43%), Gaps = 149/895 (16%)

Query: 4   VLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQ-DPSNRLASW--I 60
           +L   F  F    IA    SF           E E  AL  FK  +  DP   L+ W  I
Sbjct: 10  ILTLTFFFF---GIALAKQSF-----------EPEIEALKSFKNGISNDPLGVLSDWTII 55

Query: 61  GYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLS 120
           G    C W G+ CD+ TGH+V ++L                   L G ++P++ +L +L 
Sbjct: 56  GSLRHCNWTGITCDS-TGHVVSVSLL---------------EKQLEGVLSPAIANLTYLQ 99

Query: 121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYV 180
            LDL+ N F G +IP  I  +  L  L L    F G IP  +  L N+ YLDL  N L  
Sbjct: 100 VLDLTSNSFTG-KIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSG 158

Query: 181 ENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP---PLAIA 237
           +    +   S L  +   Y NL+      ++   L  LV L++     +HL    P++I 
Sbjct: 159 DVPEEICKTSSLVLIGFDYNNLTG-----KIPECLGDLVHLQMFVAAGNHLTGSIPVSIG 213

Query: 238 NFSTLTTLDLLYNQFDNSF-----------------------VPNWVFGLIQLVFLDLRR 274
             + LT LDL  NQ                            +P  +     LV L+L  
Sbjct: 214 TLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYD 273

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N   G IP  L NL  L+ L +  N+  SSIP+ L+R  +L  LG+S N L G +   + 
Sbjct: 274 NQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIG 333

Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
            L +L  + L     + E  +            L +L +  +++SG L   LG   NL  
Sbjct: 334 FLESLEVLTLHSNNFTGEFPQSITNL-----RNLTVLTVGFNNISGELPADLGLLTNLRN 388

Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFP 454
           L   +N + GPIP S+ + + L+ +DLS+N++ G          L  + +   H     P
Sbjct: 389 LSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIP 448

Query: 455 SWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEV 513
             + +  +L  L ++ + +TG++  +      ++ +L +S+N + G IP  + N   L +
Sbjct: 449 DDIFNCSNLETLSVADNNLTGTLKPLI-GKLQKLRILQVSYNSLTGPIPREIGNLKDLNI 507

Query: 514 LSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE 573
           L L SN F+G +P   SNL                           LQ L +  N L+G 
Sbjct: 508 LYLHSNGFTGRIPREMSNLT-------------------------LLQGLRMYSNDLEGP 542

Query: 574 LTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALL 632
           + +   + + L +LDLSNNKF+G +P     L SL  L L+ N  +G+I  SLK+ + L 
Sbjct: 543 IPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLN 602

Query: 633 TLDVGENEFVENIPTWIGERFSRM-VVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
           T D+ +N     IP  +      M + L   +N     +PK L  L  +Q +DL++N  S
Sbjct: 603 TFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFS 662

Query: 692 GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCIL 751
           G +PR +   + + TL+              +   P           V +G        +
Sbjct: 663 GSIPRSLQACKNVFTLDFSQNN--------LSGHIPDE---------VFQG--------M 697

Query: 752 NLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQ 811
           +++  ++ S+N+FSG+IP    N+  L S +LS+N  TG IPES+  + +L+        
Sbjct: 698 DMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLK-------- 749

Query: 812 LSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPLP 865
                           HL L++NNL G +P S   ++ +AS   GN DLCG+  P
Sbjct: 750 ----------------HLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKP 788

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  261 bits (666), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 276/910 (30%), Positives = 410/910 (45%), Gaps = 149/910 (16%)

Query: 33  GCLESERRALLRFKQDL------QDPSNRLASW----IGYEDCCAWAGVVCDNVTG--HI 80
           G + ++ + LL  K+ L       DP   L  W    I Y   C+W GV CDN TG   +
Sbjct: 21  GIINNDLQTLLEVKKSLVTNPQEDDP---LRQWNSDNINY---CSWTGVTCDN-TGLFRV 73

Query: 81  VELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICS 140
           + LNL                   L G ++P      +L +LDLS N+  G  IP  + +
Sbjct: 74  IALNLTG---------------LGLTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSN 117

Query: 141 MGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV 200
           + +L  L L   Q  G IP QLG+L N++ L +  N L  +    L  L  L+ L L+  
Sbjct: 118 LTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASC 177

Query: 201 NLSKASDWLRVTNTLPSLVKLRLSRCQ--------LHHLPPLAIANFSTLTTLDLLYNQF 252
                    R+T  +PS +  RL R Q        L    P  + N S LT      N  
Sbjct: 178 ---------RLTGPIPSQLG-RLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENML 227

Query: 253 DNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRF 312
            N  +P  +  L  L  L+L  N+  G IP  L  ++ L++L L +N+    IP  L   
Sbjct: 228 -NGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADL 286

Query: 313 NRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVS-SGLEIL 371
             L++L +S N+L G +     ++  L  ++L+   LS  + +     S C + + LE L
Sbjct: 287 GNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPK-----SICSNNTNLEQL 341

Query: 372 VLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMND 431
           VL G+ +SG +  +L + ++L  LDLSNNS+ G IP +L  L  L  + L  N L G   
Sbjct: 342 VLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLS 401

Query: 432 NWIPPF-QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYV 490
             I     L  L L H +L  + P  + + + L  L L  +  +G IP    +  S + +
Sbjct: 402 PSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTS-LKM 460

Query: 491 LDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIEL---DFSNNSISGSI 546
           +D+  N   G+IP ++    +L +L L  N   G LP    N  +L   D ++N +SGSI
Sbjct: 461 IDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSI 520

Query: 547 FHFICYRAHELKKLQFLYLRGNFLQGELTDCWM--------------------------- 579
                +    LK L+ L L  N LQG L D  +                           
Sbjct: 521 PSSFGF----LKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSS 576

Query: 580 --------------------NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
                               N QNL  L L  N+ TG +P +LG +  L  L +  N L+
Sbjct: 577 YLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALT 636

Query: 620 GTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA 678
           GTI   L  C  L  +D+  N     IP W+G + S++  L L SN+F   LP  L +  
Sbjct: 637 GTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCT 695

Query: 679 FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALV 738
            L ++ L  N+L+G +P+ I NL A+  LN       + QF                   
Sbjct: 696 KLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD-----KNQF------------------- 731

Query: 739 VMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQS-FNLSNNFFTGRIPESIG 797
              G   +    L+ +  +  S+N+ +G+IP+E+  L+ LQS  +LS N FTG IP +IG
Sbjct: 732 --SGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIG 789

Query: 798 AMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN 857
            +  LE++D S NQL+GE+P S+  +  L +LN+S NNL GK+    Q   + A S+ GN
Sbjct: 790 TLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGN 847

Query: 858 -DLCGAPLPR 866
             LCG+PL R
Sbjct: 848 TGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  235 bits (600), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 258/880 (29%), Positives = 389/880 (44%), Gaps = 155/880 (17%)

Query: 61  GYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLS 120
           G    C W GV C      I+ LNL                   L G ++PS+    +L 
Sbjct: 56  GSPSYCNWTGVTCGGR--EIIGLNLSG---------------LGLTGSISPSIGRFNNLI 98

Query: 121 YLDLSYNDFQGV------------------------QIPRFICSMGNLRYLNLSYTQFVG 156
           ++DLS N   G                          IP  + S+ NL+ L L   +  G
Sbjct: 99  HIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNG 158

Query: 157 MIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLP 216
            IP   GNL NLQ L L+           L GL     +   +  L +    +   N L 
Sbjct: 159 TIPETFGNLVNLQMLALAS--------CRLTGL-----IPSRFGRLVQLQTLILQDNELE 205

Query: 217 SLVKLRLSRC-----------QLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLI 265
             +   +  C           +L+   P  +     L TL+L  N F    +P+ +  L+
Sbjct: 206 GPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGE-IPSQLGDLV 264

Query: 266 QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
            + +L+L  N  QG IP+ L  L +L+ L L SN     I    +R N+LE L ++ N L
Sbjct: 265 SIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRL 324

Query: 326 QGRVIRSMASL-CNLRSVMLSCVKLSQEI-SEIFDIFSGCVSSGLEILVLRGSSVSGHLT 383
            G + +++ S   +L+ + LS  +LS EI +EI    S C S  L++L L  ++++G + 
Sbjct: 325 SGSLPKTICSNNTSLKQLFLSETQLSGEIPAEI----SNCQS--LKLLDLSNNTLTGQIP 378

Query: 384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG 443
             L Q   L  L L+NNS+ G +  S+ +L+ LQ   L +N L G       P ++  LG
Sbjct: 379 DSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGK-----VPKEIGFLG 433

Query: 444 -------------------LRHC-----------HLGSRFPSWLHSQKHLNYLDLSYSGI 473
                              + +C            L    PS +   K L  L L  + +
Sbjct: 434 KLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENEL 493

Query: 474 TGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGALP--LIS- 529
            G+IP     +  Q+ V+DL+ NQ+ G IP+       LE+  + +NS  G LP  LI+ 
Sbjct: 494 VGNIPASL-GNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINL 552

Query: 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589
            NL  ++FS+N  +GSI       ++    L F      F +G++        NL  L L
Sbjct: 553 KNLTRINFSSNKFNGSISPLCGSSSY----LSFDVTENGF-EGDIPLELGKSTNLDRLRL 607

Query: 590 SNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTW 648
             N+FTG +P + G +  L  L + +N+LSG I   L  C  L  +D+  N     IPTW
Sbjct: 608 GKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTW 667

Query: 649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
           +G +   +  L L SNKF   LP  +  L  +  + L  N+L+G +P+ I NL+A+  LN
Sbjct: 668 LG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALN 726

Query: 709 SHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF--SKNNFSG 766
               +         +   PST                    I  L ++ +   S+N  +G
Sbjct: 727 LEENQ--------LSGPLPST--------------------IGKLSKLFELRLSRNALTG 758

Query: 767 KIPLEVTNLKALQS-FNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTY 825
           +IP+E+  L+ LQS  +LS N FTGRIP +I  +  LES+D S NQL GE+P  +  +  
Sbjct: 759 EIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKS 818

Query: 826 LNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPL 864
           L +LNLS NNL GK+    Q   + A ++ GN  LCG+PL
Sbjct: 819 LGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 241/840 (28%), Positives = 363/840 (43%), Gaps = 162/840 (19%)

Query: 32  VGCLESERRALLRFKQDLQDPSNRLASWIGYE-DCCAWAGVVCDNV-TGHIVELNLRNPF 89
           V  L  E R LL FK  L D +  LASW   + + C W G+ C ++ T   V+LN  N  
Sbjct: 21  VRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIACTHLRTVTSVDLNGMN-- 78

Query: 90  TYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNL 149
                          L G ++P +  L  L  L++S N   G  IP+ +    +L  L+L
Sbjct: 79  ---------------LSGTLSPLICKLHGLRKLNVSTNFISG-PIPQDLSLCRSLEVLDL 122

Query: 150 SYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWL 209
              +F G+IP QL  +  L+ L L  N+L+      +  LS L++L +   NL+      
Sbjct: 123 CTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIP-- 180

Query: 210 RVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVF 269
                 PS+ KLR                   L  +    N F +  +P+ + G   L  
Sbjct: 181 ------PSMAKLR------------------QLRIIRAGRNGF-SGVIPSEISGCESLKV 215

Query: 270 LDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV 329
           L L  N  +G +P+ L+ L +L  L+L  NR +  IP  +   +RLE L +  N   G +
Sbjct: 216 LGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSI 275

Query: 330 IRSMASLCNLRSVMLSCVKLSQEI-SEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQ 388
            R +  L  ++ + L   +L+ EI  EI ++         E      + ++G +  + G 
Sbjct: 276 PREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSE------NQLTGFIPKEFGH 329

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
             NL  L L  N ++GPIP  LG L+ L+ +DLS N LNG                    
Sbjct: 330 ILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGT------------------- 370

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNI--FWSSASQIYVLDLSFNQIHGQIP-NL 505
                P  L    +L  L L  + + G IP +  F+S+ S   VLD+S N + G IP + 
Sbjct: 371 ----IPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFS---VLDMSANSLSGPIPAHF 423

Query: 506 TNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYL 565
                L +LSLGSN  SG +P                               K L  L L
Sbjct: 424 CRFQTLILLSLGSNKLSGNIP-------------------------RDLKTCKSLTKLML 458

Query: 566 RGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-S 624
             N L G L     N QNL  L+L  N  +GN+   LG L +L+ L L  NN +G I   
Sbjct: 459 GDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPE 518

Query: 625 LKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD 684
           + N T ++  ++  N+   +IP  +G   + +  L L  NKF   + + L  L +L+I+ 
Sbjct: 519 IGNLTKIVGFNISSNQLTGHIPKELGSCVT-IQRLDLSGNKFSGYIAQELGQLVYLEILR 577

Query: 685 LADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRA 744
           L+DN L+GE+P    +L  ++ L                                     
Sbjct: 578 LSDNRLTGEIPHSFGDLTRLMEL------------------------------------- 600

Query: 745 AEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ-SFNLSNNFFTGRIPESIGAMRSLE 803
                            N  S  IP+E+  L +LQ S N+S+N  +G IP+S+G ++ LE
Sbjct: 601 -------------QLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLE 647

Query: 804 SIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGA 862
            +  + N+LSGEIP S+ +L  L   N+SNNNL G +P +   Q  D+S++AGN  LC +
Sbjct: 648 ILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNS 707

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  221 bits (562), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 214/685 (31%), Positives = 317/685 (46%), Gaps = 48/685 (7%)

Query: 38  ERRALLRFKQDLQDPSNRLASWIGYEDC-CAWAGVVCDNVTG--HIVELNLRNPFTYCDL 94
           E + LL  K    D    L +W   +   C W GV+C N +    ++ LNL +       
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSS------- 82

Query: 95  SQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQF 154
                    +L GK++PS+  L HL  LDLSYN   G +IP+ I +  +L  L L+  QF
Sbjct: 83  --------MVLSGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNNNQF 133

Query: 155 VGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNT 214
            G IP ++G L +L+ L +  N +       +  L  L  L ++Y N + +    R    
Sbjct: 134 DGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQL-VTYSN-NISGQLPRSIGN 191

Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L  L   R  +  +    P  I    +L  L L  NQ     +P  +  L +L  + L  
Sbjct: 192 LKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGE-LPKEIGMLKKLSQVILWE 250

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N F G IP  + N TSL+ L L  N+    IP  L     LE L +  N L G + R + 
Sbjct: 251 NEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIG 310

Query: 335 SLCNLRSVMLSCVKLSQEIS-EIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLY 393
           +L     +  S   L+ EI  E+ +I       GLE+L L  + ++G +  +L   KNL 
Sbjct: 311 NLSYAIEIDFSENALTGEIPLELGNI------EGLELLYLFENQLTGTIPVELSTLKNLS 364

Query: 394 YLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP-----FQLATLGLRHCH 448
            LDLS N++ GPIP    +L  L  + L  N L+G     IPP       L  L +   H
Sbjct: 365 KLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGT----IPPKLGWYSDLWVLDMSDNH 420

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTN 507
           L  R PS+L    ++  L+L  + ++G+IP    ++   +  L L+ N + G+ P NL  
Sbjct: 421 LSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGI-TTCKTLVQLRLARNNLVGRFPSNLCK 479

Query: 508 AAQLEVLSLGSNSFSGALPLISSN---LIELDFSNNSISGSIFHFICYRAHELKKLQFLY 564
              +  + LG N F G++P    N   L  L  ++N  +G +   I      L +L  L 
Sbjct: 480 QVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGM----LSQLGTLN 535

Query: 565 LRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH- 623
           +  N L GE+     N + L  LD+  N F+G LP  +GSL  L+ L L  NNLSGTI  
Sbjct: 536 ISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPV 595

Query: 624 SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIV 683
           +L N + L  L +G N F  +IP  +G      + L L  NK    +P  L +L  L+ +
Sbjct: 596 ALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFL 655

Query: 684 DLADNNLSGEVPRCIHNLRAMVTLN 708
            L +NNLSGE+P    NL +++  N
Sbjct: 656 LLNNNNLSGEIPSSFANLSSLLGYN 680

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  220 bits (561), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 253/905 (27%), Positives = 372/905 (41%), Gaps = 181/905 (20%)

Query: 35  LESERRALLRFKQDLQDPSN-RLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCD 93
           L SE  +L+ FK+ L++PS     +       C W GV C  + G +  L+L +      
Sbjct: 23  LSSETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTC--LLGRVNSLSLPSLSLRGQ 80

Query: 94  LSQ---SKANPRSMLV------GKVNPSLLDLKHLS------------------------ 120
           + +   S  N R + +      GK+ P + +LKHL                         
Sbjct: 81  IPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLL 140

Query: 121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYV 180
           YLDLS N F G   P F  S+  L  L++S     G IPP++G LSNL  L +  N    
Sbjct: 141 YLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSG 200

Query: 181 ENLWWLPGLSFLKD------------------------LDLSYVNLSKASDWLRVTNTLP 216
           +    +  +S LK+                        LDLSY  L  +    +    L 
Sbjct: 201 QIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIP--KSFGELH 258

Query: 217 SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN 276
           +L  L L   +L  L P  + N  +L +L L +N              I L+     RN 
Sbjct: 259 NLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLP--LELSEIPLLTFSAERNQ 316

Query: 277 FQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
             G +P  +     L  LLL +NRF+  IP+ +     L+ L +++N L G + R +   
Sbjct: 317 LSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGS 376

Query: 337 CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLD 396
            +L ++ LS   LS  I E+FD   GC S G   L+L  + ++G +   L +   L  LD
Sbjct: 377 GSLEAIDLSGNLLSGTIEEVFD---GCSSLG--ELLLTNNQINGSIPEDLWKLP-LMALD 430

Query: 397 LSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSW 456
           L +N+  G IP SL   + L     SYN L G                         P+ 
Sbjct: 431 LDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGY-----------------------LPAE 467

Query: 457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLS 515
           + +   L  L LS + +TG IP       S + VL+L+ N   G+IP  L +   L  L 
Sbjct: 468 IGNAASLKRLVLSDNQLTGEIPREIGKLTS-LSVLNLNANMFQGKIPVELGDCTSLTTLD 526

Query: 516 LGSNSFSGALPLISSNLIELD---FSNNSISGSI-------FHFICYRAHELKKLQFLYL 565
           LGSN+  G +P   + L +L     S N++SGSI       FH I     E+  L FL  
Sbjct: 527 LGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQI-----EMPDLSFLQH 581

Query: 566 RGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HS 624
            G                  I DLS N+ +G +P  LG  + L  + L  N+LSG I  S
Sbjct: 582 HG------------------IFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPAS 623

Query: 625 LKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD 684
           L   T L  LD+  N    +IP  +G    ++  L L +N+ +  +P+    L  L  ++
Sbjct: 624 LSRLTNLTILDLSGNALTGSIPKEMGNSL-KLQGLNLANNQLNGHIPESFGLLGSLVKLN 682

Query: 685 LADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRA 744
           L  N L G VP  + NL+ +  +                                     
Sbjct: 683 LTKNKLDGPVPASLGNLKELTHM------------------------------------- 705

Query: 745 AEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLES 804
                        D S NN SG++  E++ ++ L    +  N FTG IP  +G +  LE 
Sbjct: 706 -------------DLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEY 752

Query: 805 IDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAP 863
           +D S N LSGEIP  +  L  L  LNL+ NNL G++PS    Q    +  +GN +LCG  
Sbjct: 753 LDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRV 812

Query: 864 LPRNC 868
           +  +C
Sbjct: 813 VGSDC 817

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  218 bits (554), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 250/898 (27%), Positives = 389/898 (43%), Gaps = 177/898 (19%)

Query: 37  SERRALLRFKQDLQDPSNRLASWIGYED------CCAWAGVVCDNVTGHIVELNLRNPFT 90
           +E  ALL++K    + S++L+SW+   +      C +W GV C N  G I ELNL N   
Sbjct: 32  AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTN--- 86

Query: 91  YCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLS 150
                                        + ++ ++ DF       FI S+ NL Y++LS
Sbjct: 87  -----------------------------TGIEGTFQDFP------FI-SLSNLAYVDLS 110

Query: 151 YTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLR 210
                G IPPQ GNLS L Y DLS N L  E     P L  LK+L + Y++         
Sbjct: 111 MNLLSGTIPPQFGNLSKLIYFDLSTNHLTGE---ISPSLGNLKNLTVLYLH--------- 158

Query: 211 VTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFL 270
             N L S++             P  + N  ++T L L  N+   S +P+ +  L  L+ L
Sbjct: 159 -QNYLTSVI-------------PSELGNMESMTDLALSQNKLTGS-IPSSLGNLKNLMVL 203

Query: 271 DLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVI 330
            L  N   G IP  L N+ S+  L L  N+   SIP+ L     L  L +  N L G + 
Sbjct: 204 YLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIP 263

Query: 331 RSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFK 390
             + ++ ++ ++ LS  KL+  I              L +L L  + ++G +  KLG  +
Sbjct: 264 PEIGNMESMTNLALSQNKLTGSIPSSLGNLKN-----LTLLSLFQNYLTGGIPPKLGNIE 318

Query: 391 NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-----QLATLGLR 445
           ++  L+LSNN + G IP SLG+L  L  + L  N L G+    IPP       +  L L 
Sbjct: 319 SMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGV----IPPELGNMESMIDLQLN 374

Query: 446 HCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN- 504
           +  L    PS   + K+L YL L  + +TG IP    +  S I  LDLS N++ G +P+ 
Sbjct: 375 NNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMIN-LDLSQNKLTGSVPDS 433

Query: 505 LTNAAQLEVLSLGSNSFSGALP---LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
             N  +LE L L  N  SGA+P     SS+L  L    N+ +G     +C +  +L+ + 
Sbjct: 434 FGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVC-KGRKLQNIS 492

Query: 562 FLY----------LR-----------GNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPI 600
             Y          LR           GN   G++ + +  Y +L  +D S+NKF G +  
Sbjct: 493 LDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISS 552

Query: 601 SLGSLISLQSLHLRKNNLSGTIHS-LKNCTALLTLDVGENEFVENIPTWIGERFSRMVVL 659
           +      L +L +  NN++G I + + N T L+ LD+  N     +P  IG   + +  L
Sbjct: 553 NWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIG-NLTNLSRL 611

Query: 660 ILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQF 719
            L  N+    +P GL  L  L+ +DL+ NN S E+P+   +   +  +N           
Sbjct: 612 RLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMN----------- 660

Query: 720 LLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ 779
                                                   S+N F G IP  ++ L  L 
Sbjct: 661 ---------------------------------------LSRNKFDGSIP-RLSKLTQLT 680

Query: 780 SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK 839
             +LS+N   G IP  + +++SL+ +D S N LSG IP +   +  L ++++SNN L G 
Sbjct: 681 QLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGP 740

Query: 840 IPSSTQLQSFDASSYAGNDLCGAPLPRN----CSEHVSTPEDENGDEDELDYWLYVSI 893
           +P +   +   A +   N    + +P+     C E +  P+ +NG+   L  W+ V I
Sbjct: 741 LPDTPTFRKATADALEENIGLCSNIPKQRLKPCRE-LKKPK-KNGN---LVVWILVPI 793

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  214 bits (545), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 219/742 (29%), Positives = 329/742 (44%), Gaps = 106/742 (14%)

Query: 147 LNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKAS 206
           L+LS     G++ P +G L NL YL+L++N L                            
Sbjct: 90  LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNAL--------------------------TG 123

Query: 207 DWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ 266
           D  R       L  + L+  Q     P+ I   S L + ++  N+     +P  +  L  
Sbjct: 124 DIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGP-LPEEIGDLYN 182

Query: 267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
           L  L    NN  GP+P  L NL  L       N F+ +IP  + +   L+ LG++ N + 
Sbjct: 183 LEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFIS 242

Query: 327 GRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKL 386
           G + + +  L  L+ V+L   K S  I +  DI  G ++S LE L L G+S+ G +  ++
Sbjct: 243 GELPKEIGMLVKLQEVILWQNKFSGFIPK--DI--GNLTS-LETLALYGNSLVGPIPSEI 297

Query: 387 GQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRH 446
           G  K+L  L L  N + G IP  LG LS +  ID S N L+G                  
Sbjct: 298 GNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSG------------------ 339

Query: 447 CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP--- 503
                  P  L     L  L L  + +TG IPN   S    +  LDLS N + G IP   
Sbjct: 340 -----EIPVELSKISELRLLYLFQNKLTGIIPNEL-SKLRNLAKLDLSINSLTGPIPPGF 393

Query: 504 -NLTNAAQLEVLSLGSNSFSGALPL---ISSNLIELDFSNNSISGSIFHFICYRAHELKK 559
            NLT+  QL++     NS SG +P    + S L  +DFS N +SG I  FIC +++    
Sbjct: 394 QNLTSMRQLQLFH---NSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN---- 446

Query: 560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
           L  L L  N + G +    +  ++L+ L +  N+ TG  P  L  L++L ++ L +N  S
Sbjct: 447 LILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFS 506

Query: 620 GTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA 678
           G +   +  C  L  L +  N+F  N+P  I  + S +V   + SN     +P  + +  
Sbjct: 507 GPLPPEIGTCQKLQRLHLAANQFSSNLPNEI-SKLSNLVTFNVSSNSLTGPIPSEIANCK 565

Query: 679 FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALV 738
            LQ +DL+ N+  G +P  + +L  +  L     +        ++   P T         
Sbjct: 566 MLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENR--------FSGNIPFT--------- 608

Query: 739 VMKGRAAEYKCILNLVRIIDF--SKNNFSGKIPLEVTNLKALQ-SFNLSNNFFTGRIPES 795
                      I NL  + +     N FSG IP ++  L +LQ + NLS N F+G IP  
Sbjct: 609 -----------IGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPE 657

Query: 796 IGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYA 855
           IG +  L  +  + N LSGEIP +  +L+ L   N S NNLTG++P +   Q+   +S+ 
Sbjct: 658 IGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFL 717

Query: 856 GND-LCGAPLPRNCS-EHVSTP 875
           GN  LCG  L R+C   H S P
Sbjct: 718 GNKGLCGGHL-RSCDPSHSSWP 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  212 bits (539), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 215/729 (29%), Positives = 310/729 (42%), Gaps = 126/729 (17%)

Query: 267 LVFLDLRRNNFQGPIPE--GLQNLTSLKHLLLDSNR--FNSSIPNWLYRFNRLESLGVSN 322
           L  LDL RN+  GP+     L + + LK L + SN   F   +   L + N LE L +S 
Sbjct: 124 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 182

Query: 323 NSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHL 382
           NS+ G          N+   +LS                GC    L+ L + G+ +SG +
Sbjct: 183 NSISG---------ANVVGWVLS---------------DGC--GELKHLAISGNKISGDV 216

Query: 383 TYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP-FQLAT 441
              + +  NL +LD+S+N+    IPF LG  S LQ +D+S N+L+G     I    +L  
Sbjct: 217 --DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 273

Query: 442 LGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQ 501
           L +         P      K L YL L+ +  TG IP+    +   +  LDLS N  +G 
Sbjct: 274 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 331

Query: 502 IP--------------------------NLTNAAQLEVLSLGSNSFSGALPL----ISSN 531
           +P                           L     L+VL L  N FSG LP     +S++
Sbjct: 332 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 391

Query: 532 LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN 591
           L+ LD S+N+ SG I   +C        LQ LYL+ N   G++     N   L+ L LS 
Sbjct: 392 LLTLDLSSNNFSGPILPNLCQNPK--NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 449

Query: 592 NKFTGNLPISLGSL------------------------ISLQSLHLRKNNLSGTIHS-LK 626
           N  +G +P SLGSL                         +L++L L  N+L+G I S L 
Sbjct: 450 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 509

Query: 627 NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA 686
           NCT L  + +  N     IP WIG R   + +L L +N F   +P  L D   L  +DL 
Sbjct: 510 NCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 568

Query: 687 DNNLSGEVPRCIHNLRAMVTLNSHAGKAIQY-------------------------QFLL 721
            N  +G +P  +      +  N  AGK   Y                         Q   
Sbjct: 569 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 628

Query: 722 YASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSF 781
            ++R P           V  G  +        +  +D S N  SG IP E+ ++  L   
Sbjct: 629 LSTRNPCNI-----TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 683

Query: 782 NLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIP 841
           NL +N  +G IP+ +G +R L  +D S N+L G IPQ+MS+LT L  ++LSNNNL+G IP
Sbjct: 684 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 743

Query: 842 SSTQLQSFDASSYAGN-DLCGAPLPRNCSEHVSTPEDENGDEDELDYWLYVSIALGFMGG 900
              Q ++F  + +  N  LCG PLPR    +                 L  S+A+G +  
Sbjct: 744 EMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHGRRPASLAGSVAMGLLFS 803

Query: 901 FWCLIGPLL 909
           F C+ G +L
Sbjct: 804 FVCIFGLIL 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	938
224072885	1024	predicted protein [Populus trichocarpa]	0.950	0.871	0.485	0.0
315436720	1020	verticillium wilt resistance-like protei	0.981	0.902	0.464	0.0
209970607	1045	M18S-3Ap [Malus floribunda]	0.979	0.879	0.452	0.0
350284739	978	receptor-like protein [Malus x domestica	0.961	0.922	0.468	0.0
209970618	967	M18-S3Bp [Malus floribunda]	0.949	0.921	0.478	0.0
350284759	980	receptor-like protein [Malus micromalus]	0.971	0.929	0.457	0.0
255543977	1075	serine/threonine-protein kinase bri1, pu	0.950	0.829	0.436	0.0
209970625	974	HB09p [Malus floribunda]	0.969	0.933	0.456	0.0
209970603	1038	AM19-5p [Malus floribunda]	0.965	0.872	0.446	0.0
14330714	1015	HcrVf1 protein [Malus floribunda]	0.948	0.876	0.443	0.0

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1006 (48%), Positives = 636/1006 (63%), Gaps = 114/1006 (11%)

Query: 24   FSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYE-DCCAWAGVVCDNVTGHIVE 82
            FS GS +  GC + ER ALL+FK DL+DPSNRLASW G+  DCC W GV+CDNVTGH++E
Sbjct: 28   FSYGS-FTQGCSQIERDALLKFKHDLKDPSNRLASWAGFGGDCCTWRGVICDNVTGHVIE 86

Query: 83   LNLRNPFTYCD-LSQSKANP------RSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIP 135
            L LR+  ++ D L+ S A+       + +L G++NPSL+ LKHL YLDL  NDF GVQIP
Sbjct: 87   LRLRS-ISFADYLASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIP 145

Query: 136  RFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLS--WNFLYVENLWWLPGLSFLK 193
            +FI  +G+L++L+LS   F G IP  LGNLS+L YL+L   ++   VENL WL  LS L+
Sbjct: 146  KFIGLIGSLKHLDLSDAGFAGTIPHGLGNLSDLNYLNLHDYYSQFNVENLNWLSQLSSLE 205

Query: 194  DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD 253
             LDLS V+L    +WL V NTLPSLV+L LS CQL  +PP+   NFS+L+ LDL  N  D
Sbjct: 206  FLDLSLVHLGNVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVD 265

Query: 254  NSFV-----PNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNW 308
             S +     P WV  L  L+ L+L  NNFQGPIP GLQNLT LK L L  N F+SSIP W
Sbjct: 266  ESAISMLNFPRWVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEW 325

Query: 309  LYRFNRLESLGVSNNSLQG---RVIRSMASL------------------------CNLRS 341
            LY F  L+ L + +N+LQG     I +M SL                        CNLR+
Sbjct: 326  LYGFEHLKLLNLGSNNLQGVLSSAIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRT 385

Query: 342  VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNS 401
            + LS VKL+Q+I+E+ ++  GCVS  +E L L G  + G LT  LG+F+NL YL L +NS
Sbjct: 386  LSLSNVKLNQDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNS 445

Query: 402  IVGPIPFSLGHLSTLQFIDLSYNELNG--------------------------------- 428
            I GPIP +LG L +L+ + LS N+LNG                                 
Sbjct: 446  ISGPIPMALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFAN 505

Query: 429  -----------------MNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
                             ++ +WIPP QL  + LR  ++G +FP W+   +HL+YLD+S S
Sbjct: 506  LKNLRNFSAAGNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNS 564

Query: 472  GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN---LTNAAQLEVLSLGSNSFSGALPLI 528
             I+ +IP  FW+ + ++  L+LS NQI G IP+   L   A   ++ L SN F G LP I
Sbjct: 565  SISSTIPIWFWTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSI 624

Query: 529  SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILD 588
             SN+  LD SNNS SGS+ +F+C++  ELK +Q L L  N L G + DCW ++Q L+ + 
Sbjct: 625  FSNVGALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIK 684

Query: 589  LSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPT 647
            LSNNK +GN+P S+G+L  L+SLH+R ++LSG +  SLKNCT L+TLDV ENE V ++P 
Sbjct: 685  LSNNKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPA 744

Query: 648  WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707
            WIG+RFS MVVL +R+NKFH  +P+ LC+LA LQI+DLA N LS  +P C + L AM T 
Sbjct: 745  WIGKRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATR 804

Query: 708  NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK 767
            N   GK       +Y     ST    ++ L+VMKG+  EY  IL  VR ID S N   G+
Sbjct: 805  NDSLGK-------IYLDSGSST---FDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGE 854

Query: 768  IPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLN 827
            IP EVT L  LQS NLS N  TGRIPE IG++R LES+DFS+NQLSGEIPQSMS LT+L+
Sbjct: 855  IPEEVTRLSELQSLNLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLS 914

Query: 828  HLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCSE----HVSTPEDENGDED 883
            HLNLS+N L G+IPS TQLQSF  SS++GN+LCG PL +NCS     HV    +E+G+  
Sbjct: 915  HLNLSDNRLRGRIPSGTQLQSFGPSSFSGNELCGPPLSKNCSVDNKFHVEHEREEDGNGL 974

Query: 884  ELDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRI 929
            +   W YVS+ LGF+ GFW ++GPL+ +RRWRY YY+FLDR+ D+I
Sbjct: 975  K-GRWFYVSMVLGFIVGFWGVVGPLMFNRRWRYVYYHFLDRLRDQI 1019

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/1021 (46%), Positives = 627/1021 (61%), Gaps = 100/1021 (9%)

Query: 1    MSGVL-VFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASW 59
            M+G + V    +F  L I T +  +   ++ +V C E ER+ALL+ KQDL DPS RLASW
Sbjct: 3    MAGSMKVVVTSIFLALLIETSTFEYVCAANRNVSCPEVERQALLKLKQDLIDPSGRLASW 62

Query: 60   IGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCD--LSQSKANPRSMLVGKVNPSLLDLK 117
                +CC W+GV+CDN+TG++++L LRNP    +     S+A  +    GK+NPSLLDLK
Sbjct: 63   GTNLNCCNWSGVICDNLTGNVIQLRLRNPLDPYNGFYIPSEAYAKMWFSGKINPSLLDLK 122

Query: 118  HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLS--W 175
            HL YLDLS ++F G+QIP F+ SM  LRYLNLS   F G++PPQLGNL+NL  LDL    
Sbjct: 123  HLRYLDLSGSNFGGIQIPEFLGSMHTLRYLNLSAAGFGGVVPPQLGNLTNLHVLDLHDFS 182

Query: 176  NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
            + +Y ENL WL  L  LK LDLS VNLSKASDW +VTNTLPSLV++ LS CQLH LP  A
Sbjct: 183  SLVYAENLQWLSHLVKLKHLDLSSVNLSKASDWFQVTNTLPSLVEIHLSGCQLHRLPLQA 242

Query: 236  IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295
              NFS+L+ LDL  N F N  +P W+F L  L+ LDL  NNFQG +P GL++L+SL++L 
Sbjct: 243  DVNFSSLSILDLSSNSFSNPLIPGWIFKLNSLLSLDLSHNNFQGQLPHGLRSLSSLRYLN 302

Query: 296  LDSNRFNSSIPNWLYRFNRLE------------------------SLGVSNNSLQGRVIR 331
            L  N F S+IP+WLY    LE                        +L +S+N L G V  
Sbjct: 303  LYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISNGFQNLTSLTTLDLSDNELTGAVPN 362

Query: 332  SMASLCNLRSVMLSCVKLSQEISEIFDIFS--GCVSSGLEILVLRGSSVSGHLTYKLGQF 389
            SM SLC+L+ + LS + LS+++SEI    S  GC+ +GLE L L    + GHLT ++  F
Sbjct: 363  SMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLNGLESLYLDSCEIFGHLTDRILLF 422

Query: 390  KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGM-------------------- 429
            KNL  L LS NSI G IP SLG L++L+ +DLS N +NG                     
Sbjct: 423  KNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWKMEKLWLSHNM 482

Query: 430  ------------------------------NDNWIPPFQLATLGLRHCHLGSRFPSWLHS 459
                                          +  W+PPFQL  + L   HLG +FPSWL S
Sbjct: 483  LEGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMALSSWHLGPKFPSWLRS 542

Query: 460  QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN---LTNAAQLEVLSL 516
            Q+   YLD+S +GI  + PN FW+ ++  + L+LS NQI+G++P+    +  A L  + L
Sbjct: 543  QRDFVYLDISVTGIIDTFPNWFWNLSTIYFSLNLSHNQIYGELPHRIGTSPVADLVYVDL 602

Query: 517  GSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTD 576
              N F G LP +SS +  LD S+N  SG I + +C +  E   L+ L+L  N L GE+ D
Sbjct: 603  SFNHFDGPLPCLSSKVNTLDLSSNLFSGPISNLLCCKMEEPYWLETLHLADNHLSGEIPD 662

Query: 577  CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLD 635
            CWMN+ N++ +DL NN  +G +P S+GSL  LQSLHLRKNNLSG +  SL+NCT+LL +D
Sbjct: 663  CWMNWPNMVSVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLSGVLPSSLQNCTSLLAID 722

Query: 636  VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695
            +GEN FV NIP WIGE+ S  +++ L SN+F   +P  LC L++L I+DLA NNLSG +P
Sbjct: 723  LGENHFVGNIPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLSYLTILDLAHNNLSGTIP 782

Query: 696  RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVR 755
            +C  NL AM   N ++   I Y F  + +        LE  L+++KG   EY   L LV 
Sbjct: 783  KCFMNLSAMAA-NQNSSNPISYAFGHFGTS-------LETLLLMIKGILLEYSSTLQLVT 834

Query: 756  IIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815
             +D S NN +G+IP  +T+L  L+  NLSNN   GRIP++IG +R LESID S NQL GE
Sbjct: 835  SMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGRIPKNIGNLRLLESIDLSRNQLRGE 894

Query: 816  IPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCSEHVSTP 875
            IP SMS+LT+L++LNLS NNLTGKIPSSTQLQSFD SSY GN LCG PL   CS   +T 
Sbjct: 895  IPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDISSYDGNHLCGPPLLEICSTDATTS 954

Query: 876  EDE------NGDEDELDY-WLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDR 928
             D        GD  E+D+ W Y S+A GF+ GFW ++GPLL ++ WR++Y+  L+R+  +
Sbjct: 955  SDHNNNENNEGDGLEVDWLWFYASMAFGFVVGFWVVMGPLLFNKSWRFRYFRILERLEYK 1014

Query: 929  I 929
            I
Sbjct: 1015 I 1015

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1039 (45%), Positives = 614/1039 (59%), Gaps = 120/1039 (11%)

Query: 1    MSGVLVFAFLLFELLAIATV--SVSFSNGS-SYHVGCLESERRALLRFKQDLQDPSNRLA 57
            M   +    LL   LAIAT+  S+  SNG+  +   C ESER+ALL FKQDL DP+N+LA
Sbjct: 1    MERSMRVVLLLIRFLAIATITFSIGLSNGNPGWPPLCKESERQALLMFKQDLNDPANQLA 60

Query: 58   SWIGYE--DCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLD 115
            SW+  E  DCC+W  VVCD++TGHI EL+L   + +        +  S   GK+NPSLL 
Sbjct: 61   SWVAEEGSDCCSWTRVVCDHMTGHIQELHLDGSYFHPYSDPFDLDSDSCFSGKINPSLLS 120

Query: 116  LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
            LKHL+YLDLS N+FQG QIP F  SM +L +LNL+Y++F G+IP +LGNLS+L+YL+LS 
Sbjct: 121  LKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLAYSEFYGIIPHKLGNLSSLRYLNLSS 180

Query: 176  NF---LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP 232
            +    L VENL W+ GLS LK LDLS+VNLSKASDWL+VTN LPSLV+L +S CQLH + 
Sbjct: 181  SNGFNLKVENLQWISGLSLLKHLDLSFVNLSKASDWLQVTNMLPSLVELDMSNCQLHQIT 240

Query: 233  PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPE--------- 283
            PL   NF++L  LDL  N+F NS +P WVF +  LV L L    FQGPIP          
Sbjct: 241  PLPTTNFTSLVVLDLSGNRF-NSLMPMWVFSIKNLVSLRLIYCWFQGPIPSISQNITSLR 299

Query: 284  ---------------------------------------GLQNLTSLKHLLLDSNRFNSS 304
                                                    +QN+T LK L L SN FNS+
Sbjct: 300  EIDLSLNSISLDPIPKWLFNQKDLALSLESNQLTGQLPSSIQNMTGLKVLNLGSNDFNST 359

Query: 305  IPNWLY------------------------RFNRLESLGVSNNSLQGRVIRSMASLCNLR 340
            IP WLY                            L +L + NN L+G++  S+  LC L+
Sbjct: 360  IPEWLYSLNNLESLLLSSNALRGEISSSIGNMTSLVNLHLDNNLLEGKIPNSLGHLCKLK 419

Query: 341  SVMLSCVKLS-QEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSN 399
             + LS    + Q  S IF+  S C  +G++ L LR +++SG +   LG   +L  LD+S 
Sbjct: 420  DLDLSKNHFTVQRPSVIFESLSRCGPNGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISG 479

Query: 400  NSIVGPIPFSLGHLSTLQFIDLSYNEL--------------------NG------MNDNW 433
            N   G     +G L  L  +D+S N L                    NG       + +W
Sbjct: 480  NQFNGTFTEVIGQLKMLTDLDISNNSLEDAVSEVSFSNLTKLKHFIANGNSFTLKTSRDW 539

Query: 434  IPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDL 493
            +PPFQL  L L   HLG  +P WL +Q  L  L LS +GI+ ++P  FW+  S++  L+L
Sbjct: 540  VPPFQLEILQLDSWHLGPEWPMWLRTQTQLTRLSLSCTGISSTVPTWFWNLTSKVRYLNL 599

Query: 494  SFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYR 553
            S NQ++GQI N+  A  + V+ L SN F+GALP++ ++L  LD SN+S SGS+FHF C R
Sbjct: 600  SHNQLYGQIQNIV-AGPMSVVDLSSNHFTGALPIVPTSLFWLDLSNSSFSGSVFHFFCDR 658

Query: 554  AHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL 613
              E ++L FL+L  N L G++ DCWM++Q L  L+L NN  TGN+P+S+G L  L+SLHL
Sbjct: 659  PDEPRQLHFLHLGNNLLSGKVPDCWMSWQYLSFLNLENNNLTGNVPMSMGYLDWLESLHL 718

Query: 614  RKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK 672
            R N+L G + HSL+NCT L  +D+GEN F  +IP WIG+  S + +L LRSNKF   +P 
Sbjct: 719  RNNHLYGELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSLSELQILNLRSNKFEGDIPN 778

Query: 673  GLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAML 732
             +C L  LQI+DLA N LSG +PRC HNL AM    S +  A  Y  L   S   S    
Sbjct: 779  EVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMADF-SESRDASVYVILNGISVPLSVT-- 835

Query: 733  LEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI 792
               A++V KGR  EY  IL  V+ +D S N   G+IP E+T+L AL+S NLSNN FTGRI
Sbjct: 836  -AKAILVTKGREMEYGKILKFVKFMDLSCNFMYGEIPEELTDLLALKSLNLSNNHFTGRI 894

Query: 793  PESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDAS 852
            P  IG M  LES+DFS+NQL GEIPQSM++LT+L+HLNLSNNNLTG+IP STQLQS D S
Sbjct: 895  PSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSNNNLTGRIPKSTQLQSLDQS 954

Query: 853  SYAGNDLCGAPLPRNCSEHVSTP----EDENGDEDEL--DYWLYVSIALGFMGGFWCLIG 906
            S+ GN+LCGAPL +NCSE+   P    E + G    L  D W YVS+ +GF  GFW ++G
Sbjct: 955  SFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYNLLEDEWFYVSLGVGFFTGFWIVLG 1014

Query: 907  PLLASRRWRYKYYNFLDRV 925
             LL +  W       L+R+
Sbjct: 1015 SLLVNMPWSILLSQLLNRI 1033

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284739|gb|AEQ27741.1| receptor-like protein [Malus x domestica]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/989 (46%), Positives = 609/989 (61%), Gaps = 87/989 (8%)

Query: 1   MSGVLVFAFLLFELLAIATVSVSFS--NGS-SYHVGCLESERRALLRFKQDLQDPSNRLA 57
           M   +    LL   LA AT++ SF   NG+  +   C ESERRALL FKQDL+DP+NRLA
Sbjct: 1   MERTMRVVLLLIRFLAFATITFSFGLCNGNPGWPPLCKESERRALLMFKQDLKDPANRLA 60

Query: 58  SWIGYED--CCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLD 115
           SW+  ED  CC+W  VVCD+VTGHI EL+L N F       S     S   GK+NPSLL 
Sbjct: 61  SWVAEEDSDCCSWTRVVCDHVTGHIHELHL-NSF------DSDWEFNSFFGGKINPSLLS 113

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLS- 174
           LKHL+YLDLS N+FQG QIP F  SM +L +LNL+++ + G+IP +LGNL++L+YL+LS 
Sbjct: 114 LKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLAHSWYGGIIPHKLGNLTSLRYLNLSS 173

Query: 175 WNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL 234
            + L VEN  W+ GLS LK LDLS+VNLSKASDWL+VTN LPSLV+L +SRCQL  +PPL
Sbjct: 174 LDDLKVENPQWISGLSLLKHLDLSWVNLSKASDWLQVTNMLPSLVELIMSRCQLDQIPPL 233

Query: 235 AIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL 294
              NF++L  LDL  N F NS +P WVF L  LV L L    FQGPIP   QN+TSL+ +
Sbjct: 234 PTPNFTSLVVLDLSRNSF-NSLMPRWVFSLKNLVSLHLSFCGFQGPIPSISQNITSLREI 292

Query: 295 LLDSNRFN-SSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEI 353
            L  N  +   IP WL+    LE L + +N L G++  S+ ++  L+ + L     +  I
Sbjct: 293 DLSFNSISLDPIPKWLFNQKILE-LSLESNQLTGQLPSSIQNMTGLKVLNLEGNDFNSTI 351

Query: 354 SEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413
            E          + LE L+L  +   G ++  +G  K+L + DLS+NSI GPIP SLG+L
Sbjct: 352 PEWL-----YSLNNLESLLLSYNYFCGEISSSIGNLKSLRHFDLSSNSISGPIPMSLGNL 406

Query: 414 STLQFIDLSYNELNGM-------------------------------------------- 429
           S+L+ +D+S N+LNG                                             
Sbjct: 407 SSLEKLDISGNQLNGTFIEVIGQLKMLMDLDISYNSLEGAMSEVSFSNLTKLKHFIANGN 466

Query: 430 ------NDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWS 483
                 + +W+PPFQL  L L   HLG ++P WL +Q  L  L LS +GI+ +IP  FW+
Sbjct: 467 SFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTWFWN 526

Query: 484 SASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSIS 543
             SQ+  L+LS NQ++GQI N+  A     + L SN F+GALP++ ++L+ LD SN+S S
Sbjct: 527 LTSQVEYLNLSRNQLYGQIQNIV-AVPFSTVDLSSNQFTGALPIVPTSLMWLDLSNSSFS 585

Query: 544 GSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLG 603
           GS+FHF C R  E +KL  L+L  N L G++ DCWM++Q+L  L+L NN  TGN+P+S+G
Sbjct: 586 GSVFHFFCDRPDEPRKLGILHLGNNSLTGKVPDCWMSWQSLSFLNLENNNLTGNVPMSMG 645

Query: 604 SLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILR 662
            L+ +QSL+LR N+L G + HSL+NCT+L  +D+ EN F  +IPTWIG+  S + VLILR
Sbjct: 646 YLLYIQSLYLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIPTWIGKSLSLLNVLILR 705

Query: 663 SNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLY 722
           SNKF   +P  +C L  LQI+DLA N LSG +PRC HNL A+   +          F   
Sbjct: 706 SNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSALANFSE--------SFSPT 757

Query: 723 ASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFN 782
           +      + L E+A++V KG   EY  IL  V+ +D S N   G+IP E+T L ALQS N
Sbjct: 758 SYWGEVASGLTENAILVTKGIEMEYSTILGFVKGMDLSCNFMYGEIPEELTGLLALQSLN 817

Query: 783 LSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS 842
           LSNN FTGRIP  IG M  LES+DFS+NQL GEIP SM+ LT+L+HLNLS NNLTG+IP 
Sbjct: 818 LSNNRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPE 877

Query: 843 STQLQSFDASSYAGNDLCGAPLPRNCSEHVSTP----EDENGDEDEL--DYWLYVSIALG 896
           STQLQS D SS+ GN+LCGAPL +NCSE+   P    E + G    L  D W YVS+ +G
Sbjct: 878 STQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLLEDEWFYVSLGVG 937

Query: 897 FMGGFWCLIGPLLASRRWRYKYYNFLDRV 925
           F  GFW ++G LL +  W       L+R+
Sbjct: 938 FFTGFWMVLGSLLVNMPWSILLSQLLNRI 966

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970618|gb|ACJ03070.1| M18-S3Bp [Malus floribunda]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/983 (47%), Positives = 606/983 (61%), Gaps = 92/983 (9%)

Query: 15  LAIATV--SVSFSNGS-SYHVGCLESERRALLRFKQDLQDPSNRLASWIGYED--CCAWA 69
           +AIAT+  S+  SNG+ ++   C ESERRALL FKQDL DP+NRL+SW+  ED  CC+W 
Sbjct: 1   MAIATITFSIGLSNGNPAWPPLCKESERRALLMFKQDLNDPANRLSSWVAEEDSDCCSWT 60

Query: 70  GVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDF 129
           GVVCD++TGHI EL+L NP TY D        +S   GK+NPSLL LKHL++LDLSYN+F
Sbjct: 61  GVVCDHMTGHIHELHLNNPDTYFDF-------QSSFGGKINPSLLSLKHLNFLDLSYNNF 113

Query: 130 QGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLY-----VENLW 184
            G QIP F  SM +L +LNL+Y+ F G+IP  LGNLS+L+YL+L    LY     VENL 
Sbjct: 114 NGTQIPSFFGSMTSLTHLNLAYSLFDGVIPHTLGNLSSLRYLNLHSYGLYGSNLKVENLQ 173

Query: 185 WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT 244
           W+ GLS LK L LSYVNLSKASDWL+VTN LPSLV+L +S C LH +PPL   NF++L  
Sbjct: 174 WISGLSLLKHLHLSYVNLSKASDWLQVTNMLPSLVELHMSFCHLHQIPPLPTPNFTSLVV 233

Query: 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK------------ 292
           LDL  N F NS +  WVF L  LV + L    FQGPIP   QN+TSLK            
Sbjct: 234 LDLSGNSF-NSLMLRWVFSLKNLVSILLGDCGFQGPIPSISQNITSLKVIDLAFNSISLD 292

Query: 293 -----------------------------------HLLLDSNRFNSSIPNWLYRFNRLES 317
                                               L L SN FNS+I  WLY  N LES
Sbjct: 293 PIPKWLFNQKDLALDLEGNDLTGLPSSIQNMTGLIALYLGSNEFNSTILEWLYSLNNLES 352

Query: 318 LGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSS 377
           L +S+N+L+G +  S+ +L +LR   LS    S  IS    +  G +SS LE L +  + 
Sbjct: 353 LDLSHNALRGEISSSIGNLKSLRHFDLS----SNSISGRIPMSLGNISS-LEQLDISVNQ 407

Query: 378 VSGHLTYKLGQFKNLYYLDLSNNSIVGPI-PFSLGHLSTLQ-FIDLSYNELNGMNDNWIP 435
            +G  T  +GQ K L  LD+S NS+ G +   S  +L  L+ F+    +     + +W+P
Sbjct: 408 FNGTFTEVIGQLKMLTDLDISYNSLEGVVSEISFSNLIKLKNFVARGNSFTLKTSRDWVP 467

Query: 436 PFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSF 495
           PFQL  L L   HLG  +P WL +Q  L  L LS +GI+ +IP  FW+  SQ+  L+LS 
Sbjct: 468 PFQLEILQLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTSQVDYLNLSH 527

Query: 496 NQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAH 555
           NQ++GQI N+   A   V+ LGSN F+GALP+++++L  LD SN+S SGS+FHF C R  
Sbjct: 528 NQLYGQIQNIFVGAFPSVVDLGSNQFTGALPIVATSLFWLDLSNSSFSGSVFHFFCDRPD 587

Query: 556 ELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 615
           E K+L+ L+L  NFL G++ DCWM++Q L  L+L NN  TGN+P+S+G L  L+SLHLR 
Sbjct: 588 EPKQLEILHLGNNFLTGKVPDCWMSWQYLGFLNLENNNLTGNVPMSMGYLQDLESLHLRN 647

Query: 616 NNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGL 674
           N+L G + HSL+NCT+L  +D+ EN F  +IP WIG+  S + VLILRSNKF   +P  +
Sbjct: 648 NHLYGELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLHVLILRSNKFEGDIPNEV 707

Query: 675 CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLE 734
           C L  LQI+DLA N LSG +PRC HNL A+   +      I                + E
Sbjct: 708 CYLKSLQILDLAHNKLSGMIPRCFHNLSALANFSESFSPRI---------FGSVNGEVWE 758

Query: 735 DALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE 794
           +A++V KG   EY  IL   + +D S N   G+IP E+T L ALQS NLSNN FTGRIP 
Sbjct: 759 NAILVTKGTEMEYSKILGFAKGMDLSCNFMYGEIPKELTGLLALQSLNLSNNRFTGRIPS 818

Query: 795 SIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSY 854
            IG M  LES+DFS+NQL GEIP SM++LT+L+HLNLS NNLTG+IP STQLQS D SS+
Sbjct: 819 KIGDMAKLESVDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPKSTQLQSLDQSSF 878

Query: 855 AGNDLCGAPLPRNCSEHVSTP----EDENGDEDEL--DYWLYVSIALGFMGGFWCLIGPL 908
            GN+LCGAPL +NCSE+   P    E + G    L  D W YVS+ +GF  GFW ++G L
Sbjct: 879 LGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYSLLEDEWFYVSLGVGFFTGFWIVLGSL 938

Query: 909 LASRRWRYKYYNFLDRVGDRIVF 931
           L +  W       L ++ +RIVF
Sbjct: 939 LVNMPWSI----LLSQLLNRIVF 957

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1002 (45%), Positives = 609/1002 (60%), Gaps = 91/1002 (9%)

Query: 1   MSGVLVFAFLLFELLAIATV--SVSFSNGS-SYHVGCLESERRALLRFKQDLQDPSNRLA 57
           M   +    LL   LAIAT+  S+   NG+ S+   C ESERRALL FKQDL+DP+N+LA
Sbjct: 1   MERTMRVVILLIRFLAIATITFSIGLCNGNPSWPPLCKESERRALLMFKQDLKDPANQLA 60

Query: 58  SWIGYE--DCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLD 115
           SW+  E  DCC+W  VVCD++TGHI EL+L         S S  +P S   GK+NPSLL 
Sbjct: 61  SWVAEEGSDCCSWTRVVCDHMTGHIHELHLNG-------SDSDLDPDSYFGGKINPSLLS 113

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
           LKHL++LDLSYNDF   +IP F  SM +L +LNL+Y+ F G+IP +LGNLS+L YL+LS 
Sbjct: 114 LKHLNFLDLSYNDFYTTRIPSFFGSMTSLTHLNLAYSWFDGIIPHKLGNLSSLHYLNLST 173

Query: 176 NF---LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP 232
            +   L VENL W+ GLS LK LDLS VNL KASDWL+VTN LPSLV+L +S C LH +P
Sbjct: 174 LYRSNLKVENLQWISGLSLLKHLDLSNVNLGKASDWLQVTNMLPSLVELHMSYCHLHQIP 233

Query: 233 PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK 292
           PL   NF++L  LDL  N F NS +  WVF L  L+ + L    FQGPIP   QN+TSL+
Sbjct: 234 PLPTPNFTSLVVLDLSGNSF-NSLMSRWVFSLKNLISIHLSDCGFQGPIPSISQNITSLR 292

Query: 293 HLLLDSNRFNSS-IPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQ 351
            + L SN  +   IP WL+    LE L +  N L G++  S+ ++  L ++ L   + + 
Sbjct: 293 EIDLSSNYISLDLIPKWLFNQKFLE-LSLEANQLTGQLPSSIQNMTGLIALNLGWNEFNS 351

Query: 352 EISE-IFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL 410
            I E ++ +      + LE L L  +++ G ++  +G  K+L +LDLSNNSI GPIP SL
Sbjct: 352 TIPEWLYSL------NNLESLHLSHNALRGEISSSIGNLKSLRHLDLSNNSISGPIPMSL 405

Query: 411 GHLSTLQFIDLSYNELNGM----------------------------------------- 429
           G+LS+L+ +D+S N+ NG                                          
Sbjct: 406 GNLSSLEKLDISVNQFNGTFTEVIDQLKMLTDLDISYNSLEGVVSEVSFSNLIKLKHFVA 465

Query: 430 ---------NDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNI 480
                    + +W+PPFQL  L L   HLG ++P WL +Q  L  L LS +GI+ +IP  
Sbjct: 466 KGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTW 525

Query: 481 FWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNN 540
           FW+  SQ+  L+LS NQ++GQI N+  A    V+ L SN F+GALP++ ++L  LD S +
Sbjct: 526 FWNLTSQVEYLNLSRNQLYGQIQNIV-AGPSSVVDLSSNQFTGALPIVPTSLFFLDLSRS 584

Query: 541 SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPI 600
           S S S+FHF C R  E K+L  L L  N L G++ DCWM++Q+L  L+L NN  TGN+P+
Sbjct: 585 SFSESVFHFFCDRPDEPKQLSVLNLGNNLLTGKVPDCWMSWQHLRFLNLENNNLTGNVPM 644

Query: 601 SLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVL 659
           S+G L  L SLHLR N+L G + HSL+NCT L  +D+ EN F  +IP WIG+  S + VL
Sbjct: 645 SMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGFSGSIPIWIGKSLSGLNVL 704

Query: 660 ILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQF 719
            LRSNKF   +P  +C L  LQI+DLA N LSG +PRC HNL A+   +          F
Sbjct: 705 NLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNLSALADFSE--------SF 756

Query: 720 LLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ 779
              +    + + L E+A++V KG   EY  IL  V+++D S N   G+IP E+T L ALQ
Sbjct: 757 YPTSYWGTNWSELSENAILVTKGIEMEYSRILGFVKVMDLSCNFMYGEIPEELTGLLALQ 816

Query: 780 SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK 839
           S NLSNN FTGRIP +IG M  LE++DFS+NQL GEIP SM++LT+L+HLNLS NNLTG+
Sbjct: 817 SLNLSNNRFTGRIPSNIGNMAWLETLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGR 876

Query: 840 IPSSTQLQSFDASSYAGNDLCGAPLPRNCSEHVSTP----EDENGDEDEL--DYWLYVSI 893
           IP STQLQS D SS+ GN LCGAPL +NCS +   P    E + G    L  D W YVS+
Sbjct: 877 IPESTQLQSLDQSSFVGNKLCGAPLNKNCSTNGVIPPPTVEQDGGGGYRLLEDEWFYVSL 936

Query: 894 ALGFMGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIR 935
            +GF  GFW ++G LL +  W       L+R+  ++  V + 
Sbjct: 937 GVGFFTGFWIVLGSLLVNMPWSILLSQLLNRIVLKMYHVIVE 978

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1100 (43%), Positives = 631/1100 (57%), Gaps = 208/1100 (18%)

Query: 2    SGVLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIG 61
            + + V   L    L ++   V F N      GC++SER ALL FK  L D SN+LA+W+G
Sbjct: 11   TNISVITILFLWSLLLSIFPVGFCNA-----GCIQSEREALLNFKLHLSDTSNKLANWVG 65

Query: 62   YEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDL-------SQSKAN------PRSMLVGK 108
              DCC W+GV+C N TGH++EL+L  P ++ +        SQ  A+       R+ L GK
Sbjct: 66   DGDCCRWSGVICHNSTGHVLELHLGTP-SFSEYTGPGSFYSQQAASLSVEYYARTALAGK 124

Query: 109  VNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNL 168
            ++PSLL+LK+L YLDLS N+F+G++IP+F+ SM +LRYLNLS   F GMIPPQLGNLSNL
Sbjct: 125  ISPSLLNLKYLRYLDLSNNNFEGIRIPKFLGSMESLRYLNLSNAGFGGMIPPQLGNLSNL 184

Query: 169  QYLDLS----------WNF-LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
            QYLDL           + F ++VENL WL  LS LK LDLSYVNL  + DWL V N+LPS
Sbjct: 185  QYLDLRVGDVHGFRARYTFNMHVENLHWLSSLSSLKFLDLSYVNL-YSFDWLNVINSLPS 243

Query: 218  LVKLRLSRCQL--HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN 275
            L++L LSRCQL     P     NFS+L                           LDL  N
Sbjct: 244  LLQLHLSRCQLGGASFPSTVNLNFSSL-------------------------AILDLSVN 278

Query: 276  NFQGPIPEGLQNLTS-LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV---IR 331
            +FQGPIP  LQNLTS LK L L  N FNSS+PNWLY F  LE L +++N LQG +   I 
Sbjct: 279  DFQGPIPNSLQNLTSSLKELDLGYNSFNSSLPNWLYGFTNLEFLSLNSNRLQGNISSLIG 338

Query: 332  SMASL----------------------CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLE 369
            +M SL                      CNLRS++L  V LSQ+I+++ +I SGC+S  LE
Sbjct: 339  NMTSLITLDLSSNLAISGGIPTSFKHLCNLRSLVLDTVTLSQKINDVLEILSGCISDELE 398

Query: 370  ILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNS---------------------------- 401
               +    +SG+LT  LG FKNL  LDLS NS                            
Sbjct: 399  SFSMYSCQLSGYLTDDLGHFKNLASLDLSYNSISGPIPKSLRHLCNLRSLDLSGNRWSQE 458

Query: 402  -------------------------IVGPIPFSLGHLSTLQFIDLSYNELNG-------- 428
                                     + GPIP SLG +++L  + LS N+LNG        
Sbjct: 459  INDVLEILSDCPTNVLESLSLSDCELSGPIPSSLGEMASLIRLSLSSNKLNGTLPESFGQ 518

Query: 429  --------------------------------------------MNDNWIPPFQLATLGL 444
                                                        +  NW PPFQL  L L
Sbjct: 519  LTRLEIAFFDGNLLEGEVTEVHFANLTKLFIFDGSMMANGPVLRVGSNWTPPFQLHYLSL 578

Query: 445  RHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN 504
            R   +G +FP+WLHS ++L  LDLS SGI+ +IP  FW  +S     +LS NQIHG IPN
Sbjct: 579  RSWKIGPQFPAWLHSLRYLEILDLSNSGISSTIPVWFWDMSSNFAYANLSHNQIHGVIPN 638

Query: 505  L---TNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
            +   +N  ++ +  + SN+F G +P  SSNL  LD S+NS +GSI +F+CY+  E+KK++
Sbjct: 639  VPVVSNDYRITMFDMSSNNFRGPVPYFSSNLSALDLSSNSFTGSIINFLCYKMQEVKKME 698

Query: 562  FLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGT 621
             L L GN L GE+ DCW+++Q+L  ++LSNNKFTGN+P S+G+L  L+S+H   N+LSG 
Sbjct: 699  VLNLGGNLLSGEIPDCWLSWQSLTAINLSNNKFTGNIPKSIGTLSFLESVHFANNDLSGD 758

Query: 622  IH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFL 680
            I  S++NC  L TLD   N+ V  IP+WIG+    M++LILR NK H  +P+ +C +A L
Sbjct: 759  IPLSIQNCRKLFTLDFSGNKLVGKIPSWIGKSIPDMIILILRGNKLHGQIPEEICRMASL 818

Query: 681  QIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVM 740
            QI+DLADNN S  +P C  N   MV +N   G     Q     S    + +L++ A++V+
Sbjct: 819  QILDLADNNFSSMIPSCFSNFSGMVKVNDSFGSLTFDQ-----SNVGPSPILIDSAILVI 873

Query: 741  KGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMR 800
            KGR AEY  IL  V+ ID S NN SG+IP+ +T+L  LQS + S N  TGRIP+ IGAM+
Sbjct: 874  KGRVAEYSTILGFVKAIDLSNNNLSGEIPMNITSLVGLQSLSFSQNSLTGRIPKDIGAMQ 933

Query: 801  SLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLC 860
            SLESIDFS N L GEIP+S+SSLT+L+HLNLSNN LTGKIPS TQL+ FD SS+  NDLC
Sbjct: 934  SLESIDFSQNHLFGEIPESISSLTFLSHLNLSNNKLTGKIPSGTQLRGFDPSSFMDNDLC 993

Query: 861  GAPLPRNCSEH--VSTP-------EDENGDEDELDYWLYVSIALGFMGGFWCLIGPLLAS 911
            G PLP NCS+   +  P       EDENG E +  ++ +VSIA GF+ GFW ++GPL  +
Sbjct: 994  GPPLPLNCSKEGILHAPDDEKEREEDENGFEVDW-FYFFVSIAPGFVVGFWLVVGPLCFN 1052

Query: 912  RRWRYKYYNFLDRVGDRIVF 931
            RRWR+ Y+ FL  + D+I +
Sbjct: 1053 RRWRFAYFRFLYDLWDKICW 1072

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970625|gb|ACJ03073.1| HB09p [Malus floribunda]

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/998 (45%), Positives = 604/998 (60%), Gaps = 89/998 (8%)

Query: 1   MSGVLVFAFLLFELLAIATV--SVSFSNG-SSYHVGCLESERRALLRFKQDLQDPSNRLA 57
           M   +    LL  +LAIAT+  S+   NG   +   C ESER+ALL FKQDL+DP+NRL+
Sbjct: 1   MERSMRVVLLLIRVLAIATITFSIGLCNGIPGWPPLCKESERQALLMFKQDLEDPANRLS 60

Query: 58  SWIGYE--DCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLD 115
           SW+  E  DCC+W GVVCD++TGHI EL+L N  +  D ++S         GK+N SLL 
Sbjct: 61  SWVAEEGSDCCSWTGVVCDHITGHIHELHLNNSNSVVDFNRSFG-------GKINSSLLG 113

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
           LKHL+YLDLS N F   QIP F  SM +L +LNL  + F G+IP QLGNLS+L+YL+LS 
Sbjct: 114 LKHLNYLDLSNNYFSTTQIPSFFGSMTSLTHLNLGDSSFDGVIPHQLGNLSSLRYLNLSS 173

Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
             L VENL W+ GLS LK LDLS+VNLSKASDWL+VTN LP LV+L +S C LH  PPL 
Sbjct: 174 YSLKVENLQWISGLSLLKQLDLSFVNLSKASDWLQVTNMLPCLVELIMSDCVLHQTPPLP 233

Query: 236 IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295
             NF++L  LDL YN F NS  P WVF +  LV L L    FQGPIP   QN+TSL+ + 
Sbjct: 234 TINFTSLVVLDLSYNSF-NSLTPRWVFSIKNLVSLHLTGCGFQGPIPGISQNITSLREID 292

Query: 296 LDSNRFN-SSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEIS 354
           L  N  +   IP WL+    LE L +  N + G++  S+ ++  L+ + L     +  I 
Sbjct: 293 LSFNSISLDPIPKWLFNKKILE-LNLEANQITGQLPSSIQNMTCLKVLNLRENDFNSTIP 351

Query: 355 EIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLS 414
           +     +   S  L    LRG      ++  +G  K+L + DLS NSI GPIP SLG+LS
Sbjct: 352 KWLYSLNNLESLLLSHNALRG-----EISSSIGNLKSLRHFDLSGNSISGPIPMSLGNLS 406

Query: 415 TL------------------------QFIDLSYNELNGM--------------------- 429
           +L                         ++D+SYN   GM                     
Sbjct: 407 SLVELDISGNQFNGTFIEVIGKLKLLAYLDISYNSFEGMVSEVSFSHLTKLKHFIAKGNS 466

Query: 430 -----NDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSS 484
                + NW+PPFQL +L L   HLG  +P WL +Q  L  L LS +GI+ +IP  FW+ 
Sbjct: 467 FTLKTSRNWLPPFQLESLQLDSWHLGPEWPMWLRTQTQLTDLSLSGTGISSTIPTWFWNL 526

Query: 485 ASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISG 544
             Q+  L+LS NQ++G+I N+  AA   V+ LGSN F+GALP++ ++L  LD SN+S SG
Sbjct: 527 TFQLGYLNLSHNQLYGEIQNIV-AAPYSVVDLGSNKFTGALPIVPTSLAWLDLSNSSFSG 585

Query: 545 SIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGS 604
           S+FHF C R  E K+L  L+L  N L G++ DCW ++Q L  L+L NN  TGN+P+S+  
Sbjct: 586 SVFHFFCDRPEEAKQLSILHLGNNLLTGKVPDCWRSWQGLAALNLENNLLTGNVPMSMRY 645

Query: 605 LISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRS 663
           L  L+SLHLR N+L G + HSL+NC++L  +D+G N FV +IP WIG+  SR+ VL LRS
Sbjct: 646 LQQLESLHLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGSIPIWIGKSLSRLNVLNLRS 705

Query: 664 NKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYA 723
           N+F   +P  +C L  LQI+DLA N LSG +PRC HNL AM T  S +  +I ++     
Sbjct: 706 NEFEGDIPSEICYLKNLQILDLARNKLSGTIPRCFHNLSAMATF-SESFSSITFR----- 759

Query: 724 SRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNL 783
                T   +E ++VV KGR  EY  IL  V+ +D S N   G+IP E+T+L ALQS NL
Sbjct: 760 -----TGTSVEASIVVTKGREVEYTEILGFVKGMDLSCNFMYGEIPEELTDLLALQSLNL 814

Query: 784 SNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS 843
           S+N FTGR+P  IG M  LES+DFS+NQL GEIP SM++LT+L+HLNLS NNLTG+IP S
Sbjct: 815 SHNRFTGRVPSKIGNMAMLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPKS 874

Query: 844 TQLQSFDASSYAGNDLCGAPLPRNCSEHVSTP----EDENGDEDEL--DYWLYVSIALGF 897
           TQLQS D SS+ GN+LCGAPL +NC  +   P    E + G    L  D W YV++A+GF
Sbjct: 875 TQLQSLDQSSFVGNELCGAPLNKNCRANGVIPPPTVEQDGGGGYRLLEDEWFYVNLAVGF 934

Query: 898 MGGFWCLIGPLLASRRWRYKYYNFLDRVGDRIVFVNIR 935
             GFW ++G LL +  W        +R+  ++  V ++
Sbjct: 935 FTGFWIVLGSLLVNMPWSILLSQLQNRMVLKMYHVIVK 972

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/1034 (44%), Positives = 608/1034 (58%), Gaps = 128/1034 (12%)

Query: 6    VFAFLLFELLAIATVSVSFS--NGS-SYHVGCLESERRALLRFKQDLQDPSNRLASWIGY 62
            V   L+  L AIAT++ SF   NG+  +   C +SER+ALL FKQDL+DP+NRL+SW+  
Sbjct: 7    VVLLLIRFLAAIATITFSFGLCNGNPDWPPLCKDSERQALLMFKQDLKDPANRLSSWVAE 66

Query: 63   ED--CCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLS 120
            ED  CC+W GVVCD++TGHI EL+L +       S       S   GK+NPSLL LKHL+
Sbjct: 67   EDSDCCSWTGVVCDHITGHIHELHLNS-------SNFDWYINSFFGGKINPSLLSLKHLN 119

Query: 121  YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF--- 177
            YLDLS NDF   QIP F  SM +L +LNL  ++F G+IP  LGNLS+L+YL+LS  +   
Sbjct: 120  YLDLSNNDFSSTQIPSFFGSMTSLTHLNLGTSEFDGIIPHNLGNLSSLRYLNLSSLYGPR 179

Query: 178  LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIA 237
            L VENL W+ GLS LK LDLSYVNLSKASDWL+VTN LPSLV+L +  CQL  + PL   
Sbjct: 180  LKVENLQWIAGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELIMLDCQLDQIAPLPTP 239

Query: 238  NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPE-------------- 283
            NF++L  LDL  N F NS +P WVF L  LV L +    FQGPIP               
Sbjct: 240  NFTSLVVLDLSINFF-NSLMPRWVFSLKNLVSLHISDCGFQGPIPSISENITSLREIDLS 298

Query: 284  ----------------------------------GLQNLTSLKHLLLDSNRFNSSIPNWL 309
                                               +QN+T L  L L+ N+FNS+IP WL
Sbjct: 299  FNYISLDLIPKWLFNQKFLKLSLEQNQLIGQLPSSIQNMTGLTTLNLEGNKFNSTIPEWL 358

Query: 310  YRFNRLESLGVS------------------------NNSLQGRVIRSMASLCNLRSVMLS 345
            Y  N LESL +S                        NN L+G++  S+  LC L+ + LS
Sbjct: 359  YNLNNLESLILSSNAFRGEISSSIGNMTSLVNLHLDNNLLEGKIPNSLGHLCKLKVLDLS 418

Query: 346  CVKLS-QEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG 404
                + +  SE+F+  S C   G++ L LR +++SG +   LG   +L  LD+S N   G
Sbjct: 419  ENHFTVRRPSEMFESLSRCGPHGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISINQFDG 478

Query: 405  PIPFSLGHLSTLQFIDLSYNELNG--------------------------MNDNWIPPFQ 438
                 +G L  L  +D+SYN L G                           + +W+PPFQ
Sbjct: 479  TFTEVIGQLKMLTDLDISYNSLEGAVSEAFFSNLTKLKHFIANGNSFTWKTSRDWLPPFQ 538

Query: 439  LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498
            L +L L   HLG  +P WL +Q  L  L LS +GI+ +IP  FW+  SQ+  L+LS+NQ+
Sbjct: 539  LESLQLDSWHLGPEWPMWLQTQTQLTDLSLSGTGISSAIPTWFWNLTSQVKYLNLSYNQL 598

Query: 499  HGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELK 558
            +G+I N+   AQ  ++ L SN F+G+LP++ ++L  LD SN+S SGS+FHF C R +ELK
Sbjct: 599  YGEIQNIF-VAQYSLVDLSSNRFTGSLPIVPASLWWLDLSNSSFSGSVFHFFCDRTYELK 657

Query: 559  KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
                L L  N L G++ DCWMN+Q L +L+L NN  TGN+P+SLG L  L+SLHLR N+L
Sbjct: 658  TTYVLDLGNNLLSGKIPDCWMNWQELEVLNLENNHLTGNVPMSLGYLQRLRSLHLRNNHL 717

Query: 619  SGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDL 677
             G + HSL+NCT+L  LD+G N FV +IP WIG+  S + +L LRSN+F   +P  +C L
Sbjct: 718  DGELPHSLQNCTSLSILDLGGNGFVGSIPIWIGKSLSELQILNLRSNEFKGDIPYEVCYL 777

Query: 678  AFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDAL 737
              LQI+DLA N LSG   RC HNL AM  L+          F +++S    +   LE+A+
Sbjct: 778  KSLQILDLARNKLSGTTSRCFHNLSAMAILSESFSPTT---FQMWSSAG--SFSFLENAI 832

Query: 738  VVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIG 797
            +V KGR  EY  IL  V+ +D S N  SG+IP  +T++ ALQS NLSNN FTGRIP  IG
Sbjct: 833  LVTKGREMEYSKILGFVKSMDLSCNFLSGEIPEGLTSVLALQSLNLSNNRFTGRIPSKIG 892

Query: 798  AMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN 857
             M  LES+DFS+N+L G IP SM++LT+L++LNLS NNLTG+IP STQLQSF+ SS+ GN
Sbjct: 893  NMVRLESLDFSMNELHGGIPPSMTTLTFLSYLNLSYNNLTGRIPESTQLQSFNQSSFVGN 952

Query: 858  DLCGAPLPRNCSEHVSTP----EDENGDEDEL--DYWLYVSIALGFMGGFWCLIGPLLAS 911
            +LCG PL  NCS +   P    E + G    L  D W YVS+ LGF  GFW ++G LL +
Sbjct: 953  ELCGRPLNNNCSANGVKPPPKVEQDGGGGYYLLEDKWFYVSLGLGFFTGFWIVLGSLLVN 1012

Query: 912  RRWRYKYYNFLDRV 925
              W       L+R+
Sbjct: 1013 MPWSMLLSGLLNRI 1026

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330714|emb|CAC40825.1| HcrVf1 protein [Malus floribunda]

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/1038 (44%), Positives = 597/1038 (57%), Gaps = 148/1038 (14%)

Query: 1    MSGVLVFAFLLFELLAIATV--SVSFSNGS-SYHVGCLESERRALLRFKQDLQDPSNRLA 57
            M   +    LL   LAIAT+  S+  SNG+ S+   C ESER+ALL FKQDL+DP+NRLA
Sbjct: 1    MERTMRVVILLIRFLAIATITFSIGLSNGNPSWPPLCKESERQALLIFKQDLKDPANRLA 60

Query: 58   SWIGYED--CCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLD 115
            SW+  ED  CC+W GVVCD++TGHI EL+L N  ++ D         S   GK+NPSLL 
Sbjct: 61   SWVAEEDSNCCSWTGVVCDHITGHIHELHLNNSDSHWDF-------ESFFGGKINPSLLS 113

Query: 116  LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
            LKHL++LDLSYN+F+G QIP F  SM +L +LNL ++ F G+IP  LGNLS+L+YL LS 
Sbjct: 114  LKHLNFLDLSYNNFEGTQIPSFFGSMTSLTHLNLGFSWFDGVIPHNLGNLSSLRYLYLSS 173

Query: 176  NF---LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP 232
             +   L  ENL W+ GLS LK LDLSYVNLSKASDWL+VTN LPSLV+L +S CQL  +P
Sbjct: 174  FYNSNLKAENLQWISGLSLLKHLDLSYVNLSKASDWLQVTNMLPSLVELDMSGCQLDQIP 233

Query: 233  PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPE--------- 283
            PL   NF++L  LDL  N F NS +P WVF L  LV L LR   FQGPIP          
Sbjct: 234  PLPTPNFTSLVVLDLSENFF-NSLMPRWVFSLKNLVSLHLRFCGFQGPIPSISQNITSLR 292

Query: 284  ---------------------------------------GLQNLTSLKHLLLDSNRFNSS 304
                                                     QN+T LK L L+SN FNS+
Sbjct: 293  EIDLSENSISLDPIPKWLFNQKDLALSLKSNQLTGQLPSSFQNMTGLKVLNLESNYFNST 352

Query: 305  IPNWLY------------------------RFNRLESLGVSNNSLQGRVIRSMASLCNLR 340
            IP WLY                            L +L + NN LQG++  S+  LC L+
Sbjct: 353  IPKWLYGLNNLESLLLSYNALRGEISSSIGNMTSLVNLNLENNQLQGKIPNSLGHLCKLK 412

Query: 341  SVMLSCVKLS-QEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSN 399
             V LS    + +  SEIF+  SGC   G++ L LR +++SG +   LG   +L  LD+S 
Sbjct: 413  VVDLSENHFTVRRPSEIFESLSGCGPDGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISG 472

Query: 400  NSIVGPIPFSLGHLSTLQFIDLSYNELNGM--------------------------NDNW 433
            N   G     +G L  L  +D+SYN   G+                          + +W
Sbjct: 473  NHFNGTFTEVIGQLKMLTDLDISYNWFEGVVSEISFSNLTKLKHFVAKGNSFTLKTSRDW 532

Query: 434  IPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDL 493
            +PPFQL TL L   HLG ++P WL +Q  L  L LS +GI+ +IP  FW+    ++ L+L
Sbjct: 533  VPPFQLETLRLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTFHVWYLNL 592

Query: 494  SFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYR 553
            S NQ++GQI N+   A   V+ LGSN F+GALP++ ++L+ LD SN+S SGS+FHF C R
Sbjct: 593  SHNQLYGQIQNI--VAGRSVVDLGSNQFTGALPIVPTSLVWLDLSNSSFSGSVFHFFCDR 650

Query: 554  AHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL 613
              E K L  L+L  NFL G++ DCWM++  L  ++L NN  TGN+P+S+G L        
Sbjct: 651  PDETKLLYILHLGNNFLTGKVPDCWMSWPQLGFVNLENNNLTGNVPMSMGELP------- 703

Query: 614  RKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKG 673
                     HSL+NCT L  +D+ EN F  +IP WIG+  S + VL LRSNKF   +P  
Sbjct: 704  ---------HSLQNCTMLSFVDLSENGFSGSIPIWIGKSLSWLYVLNLRSNKFEGDIPNE 754

Query: 674  LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLL 733
            +C L  LQI+DLA N LSG +PRC HNL A+   +          F  + +   +     
Sbjct: 755  VCYLQSLQILDLAHNKLSGMIPRCFHNLSALANFSE--------SFFPFIT-GNTDGEFW 805

Query: 734  EDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP 793
            E+A++V KG   EY  IL  V+ +D S N   G+IP E+T L ALQS NLSNN FTGRIP
Sbjct: 806  ENAILVTKGTEMEYSKILGFVKGMDLSCNFMYGEIPKELTGLLALQSLNLSNNRFTGRIP 865

Query: 794  ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASS 853
              IG M  LES+DFS+NQL GEIP SM++LT+L+HLNLS NNLTG+I  STQLQS D SS
Sbjct: 866  SKIGNMAQLESLDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRILESTQLQSLDQSS 925

Query: 854  YAGNDLCGAPLPRNCSEHVSTP----EDENGDEDEL--DYWLYVSIALGFMGGFWCLIGP 907
            + GN+LCGAPL +NCSE+   P    E + G    L  D W YV++ +GF  GFW ++G 
Sbjct: 926  FVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYRLLEDEWFYVTLGVGFFTGFWIVLGS 985

Query: 908  LLASRRWRYKYYNFLDRV 925
            LL +  W       L+R+
Sbjct: 986  LLVNMPWSILLSQLLNRI 1003

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	938
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.909	0.891	0.293	9.6e-73
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.868	0.911	0.305	1.1e-71
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.740	0.856	0.306	2.9e-71
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.793	0.835	0.308	7.7e-71
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.794	0.836	0.305	1.6e-70
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.797	0.840	0.308	3.3e-70
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.808	0.857	0.304	8.9e-70
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.804	0.800	0.311	1.1e-69
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.793	0.844	0.304	2.1e-68
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.759	0.827	0.297	9.2e-68

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 278/947 (29%), Positives = 420/947 (44%)

Query:    34 CLESERRALLRFKQDLQ--DPS------------NRLASWIGYEDCCAWAGVVCDNVTGH 79
             C   +R ALL FK + +   PS             +  SW    DCC W GV C+  +G 
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSDCCNWEGVTCNAKSGE 96

Query:    80 IVELNLRNPFTYCDLSQSKANPRSMLVGKVNPXXXXXXXXXXXXXXXNDFQGVQIPRFIC 139
             ++EL         DLS S  + R       N                NDF+G QI   I 
Sbjct:    97 VIEL---------DLSCSSLHGRF----HSNSSIRNLHFLTTLDLSFNDFKG-QITSSIE 142

Query:   140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY 199
             ++ +L YL+LS   F G I   +GNLS L YL+L  N    +    +  LS L  LDLSY
Sbjct:   143 NLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSY 202

Query:   200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPN 259
                     +      L  L  L L   +     P +I N S LTTLDL  N F    +P+
Sbjct:   203 NRFF--GQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQ-IPS 259

Query:   260 WVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLG 319
             ++  L QL FL L  NNF G IP    NL  L  L +D N+ + + PN L     L  L 
Sbjct:   260 FIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGLSLLS 319

Query:   320 VSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEI-SEIFDIFS----------------- 361
             +SNN   G +  ++ SL NL     S    +    S +F I S                 
Sbjct:   320 LSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLEF 379

Query:   362 GCVSS--GLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-GHLSTLQF 418
             G +SS   L  L +  ++  G +   + +   L+ LD+S+ +  GP+ FS+  HL +L  
Sbjct:   380 GNISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFSIFSHLKSLLD 439

Query:   419 IDLSY-NELNGMNDNWIPPF--QLATLGLRHCHLGSRFPSWLHS--QKHLNYLDLSYSGI 473
             +++S+ N    ++ N+   +  +L  L L   H+ +   S +     + +  L LS  GI
Sbjct:   440 LNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGI 499

Query:   474 TGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSG-ALPLISS- 530
             T   P  F  +  ++  LD+S N+I GQ+P+ L     L  ++L +N+  G   P     
Sbjct:   500 T-EFPE-FVRTQHELGFLDISNNKIKGQVPDWLWRLPILYYVNLSNNTLIGFQRPSKPEP 557

Query:   531 NLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQN-LMILDL 589
             +L+ L  SNN+  G I  FIC     L+ L  L L  N   G +  C  + ++ L +L+L
Sbjct:   558 SLLYLLGSNNNFIGKIPSFIC----GLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNL 613

Query:   590 SNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTW 648
               N  +G                   N L G +  SL   + L  L+V  N   +  P W
Sbjct:   614 RQNHLSGGLPKQIFEILRSLDVGH--NQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFW 671

Query:   649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVTL 707
             +     ++ VL+LRSN FH   P        L+I+D++ N  +G +P        AM +L
Sbjct:   672 LSS-LPKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNRFNGTLPTEYFVKWSAMSSL 728

Query:   708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVM-KGRAAEYKCILNLVRIIDFSKNNFSG 766
               +  ++ + +++        + +  +D++V+M KG A E   IL +   +DFS N F G
Sbjct:   729 GKNEDQSNE-KYM-------GSGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEG 780

Query:   767 KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXX 826
             +IP  +  LK L   +LSNN F+G +P S+G + +LES+D S N+L+GEIPQ +      
Sbjct:   781 EIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFL 840

Query:   827 XXXXXXXXXXTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNCSE-HV-------STPED 877
                        G +P   Q  + + S++  N  L G+ L   C + H         TPE 
Sbjct:   841 AYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHTPASHQQFETPET 900

Query:   878 ENGDEDELDYWLYVSIALGFMGGFWCLIGPLLASRRWRYKYYNFLDR 924
             E  DED +  W+  +I  G    F  + G +L S +  + + N  DR
Sbjct:   901 EEEDEDLIS-WIAAAIGFGPGIAFGLMFGYILVSYKPEW-FMNPFDR 945

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 274/898 (30%), Positives = 400/898 (44%)

Query:    58 SWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPXXXXXX 117
             SW    DCC W GV C+  +G ++ELNL      C     + +  S +            
Sbjct:    12 SWGNNSDCCNWEGVTCNAKSGEVIELNLS-----CSSLHGRFHSNSSI--------RNLH 58

Query:   118 XXXXXXXXXNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF 177
                      NDF+G QI   I ++ +L  L+LSY +F G I   +GNLS L  LDLS+N 
Sbjct:    59 FLTTLDRSHNDFEG-QITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQ 117

Query:   178 LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIA 237
                +    +  LS L  L LS  N         + N L  L  L LS  +     P +I 
Sbjct:   118 FSGQIPSSIGNLSHLTFLGLSG-NRFFGQIPSSIGN-LSHLTFLGLSGNRFFGQFPSSIG 175

Query:   238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLD 297
               S LT L L YN++    +P+ +  L QL+ L L  NNF G IP    NL  L  L + 
Sbjct:   176 GLSNLTNLHLSYNKYSGQ-IPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVS 234

Query:   298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEI-SEI 356
              N+   + PN L     L  + +SNN   G +  ++ SL NL +   S    +    S +
Sbjct:   235 FNKLGGNFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFL 294

Query:   357 FDIFS-----------------GCVSS--GLEILVLRGSSVSGHLTYKLGQFKNLYYLDL 397
             F I S                 G +SS   L+ L +  ++  G +   + +  NL  L +
Sbjct:   295 FIIPSLTYLGLSGNQLKGTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGI 354

Query:   398 SN-NSIVGPIPFSL-GHLSTLQFIDLSYNELNGMNDNWIPPF--QLATLGLRHCHLGSRF 453
             S+ N+   P+ FS+  HL +L  + LSY     ++ N I P+   L +L L    + +  
Sbjct:   355 SHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATN 414

Query:   454 PSWLHSQ---KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAA 509
              S + S    + +  L LS  GIT   P I   +  ++  LD+S N+I GQ+P  L    
Sbjct:   415 KSSVSSDPPSQSIQSLYLSGCGIT-DFPEIL-RTQHELGFLDVSNNKIKGQVPGWLWTLP 472

Query:   510 QLEVLSLGSNSFSG-ALPLISS-NLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRG 567
              L  L+L +N+F G   P     ++  L  SNN+ +G I  FIC    EL+ L  L L  
Sbjct:   473 NLFYLNLSNNTFIGFQRPTKPEPSMAYLLGSNNNFTGKIPSFIC----ELRSLYTLDLSD 528

Query:   568 NFLQGELTDCWMNYQ-NLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTI-HSL 625
             N   G +  C  N + NL  L+L  N  +G                   N L G +  SL
Sbjct:   529 NNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHIFESLRSLDVGH--NQLVGKLPRSL 586

Query:   626 KNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDL 685
             +  + L  L+V  N   +  P W+     ++ VL+LRSN FH  + + L     L+I+D+
Sbjct:   587 RFFSNLEVLNVESNRINDMFPFWLSS-LQKLQVLVLRSNAFHGPINQAL--FPKLRIIDI 643

Query:   686 ADNNLSGEVP-RCIHNLRAMVTLNSHA-GKAIQYQFLLYASRAPSTAMLLEDALVVM-KG 742
             + N+ +G +P         M +L ++  G  + Y    Y           +D++V+M KG
Sbjct:   644 SHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYLGSGY----------YQDSMVLMNKG 693

Query:   743 RAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSL 802
               +E   IL +   +DFS N F G+IP  +  LK L   NLSNN FTG IP SIG + +L
Sbjct:   694 VESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTAL 753

Query:   803 ESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDASSYAGN-DLCG 861
             ES+D S N+L GEIPQ +                TG +P   Q  +   SS+ GN  L G
Sbjct:   754 ESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFG 813

Query:   862 APLPRNCSE-HV-------STPEDENGDEDELDYWLYVSIALGFMGGFWCLIGPLLAS 911
             + L   C + H         TP+ E  DED +  W+  +I  G    F  + G +L S
Sbjct:   814 SSLEEVCRDIHTPASHQQFETPQTEEEDEDLIS-WIAAAIGFGPGIAFGLMFGYILVS 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 225/734 (30%), Positives = 360/734 (49%)

Query:   205 ASDWLRVTNTLPSLVKLRLSRCQLH-HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG 263
             +S  LR    + SLV L +S   +   +P  A  N ++L +LD+  N+F+ S +P+ +F 
Sbjct:    94 SSSILRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCCNRFNGS-IPHELFS 152

Query:   264 LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNN 323
             L  L  LDL RN   G +   ++ L +L+ L+LD N    +IP+ +     L +L +  N
Sbjct:   153 LTNLQRLDLSRNVIGGTLSGDIKELKNLQELILDENLIGGAIPSEIGSLVELLTLTLRQN 212

Query:   324 SLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLT 383
                  +  S++ L  L+++ L    LS +I +  DI    V+  L  L L  + +SG + 
Sbjct:   213 MFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPD--DI-GNLVN--LSTLSLSMNKLSGGIP 267

Query:   384 YKLGQFKNLYYLDLSNNS-IVGPIPFS-LGHLSTLQFIDLS-YNELNGMNDNWI-PPFQL 439
               +   KNL  L L NN+ + G IP + L  L  L+ + L   N+L   N+ ++ P F+L
Sbjct:   268 SSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKL 327

Query:   440 ATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH 499
               L LR C L    P WL +Q  L YLDLS + + G  P   W +  +I  + LS N++ 
Sbjct:   328 THLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPK--WLADLKIRNITLSDNRLT 385

Query:   500 GQIP-NLTNAAQLEVLSLGSNSFSGALP--LISSNLIELDFSNNSISGSIFHFICYRAHE 556
             G +P NL     L  L L  N+FSG +P  +  S ++ L  S N+ SGS+   I     +
Sbjct:   386 GSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNFSGSVPKSIT----K 441

Query:   557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKN 616
             +  L+ L L  N L GE    +     L  LD+S+N+F+G+                 +N
Sbjct:   442 IPFLKLLDLSKNRLSGEFPR-FRPESYLEWLDISSNEFSGDVPAYFGGSTSMLLMS--QN 498

Query:   617 NLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLC 675
             N SG    + +N + L+ LD+ +N+    + + I +  S + VL LR+N     +P+G+ 
Sbjct:   499 NFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGIS 558

Query:   676 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLE- 734
             +L  L+++DL++NNL G +P  + NL  M+     +   I+  F  Y    P+   L+E 
Sbjct:   559 NLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTD-IPNIERLIEI 617

Query:   735 ---D--ALVVMKGRAAEYKCILN--LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNF 787
                D  +LVV    + +     N  L  ++D SKN   G+IP  + NLK+L+  NLSNN 
Sbjct:   618 ESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNE 677

Query:   788 FTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQ 847
             F+G IP+S G +  +ES+D S N L+GEIP+++                 G+IP S QL 
Sbjct:   678 FSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLD 737

Query:   848 SFDASS-YAGND-LCGAPLPRNC-SEHVSTPEDENGDED---ELDYWLYVSIALGFMGGF 901
               +  + YA N  +CG  +   C       P +E  +ED   E   + + + A+G   GF
Sbjct:   738 RLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEETIFSWNAAAIGCSCGF 797

Query:   902 WCLIGPLLASRRWR 915
                +  +  +  W+
Sbjct:   798 LIAVVFMSYNELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 247/801 (30%), Positives = 378/801 (47%)

Query:   143 NLRYLNLSYTQFVGM-IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVN 201
             +LR L L +  F    I  + G L+NL+ L LS +    +  +    LS L  LDLS   
Sbjct:    99 HLRSLLLPHNNFTSSSISSKFGMLNNLEVLSLSSSGFLAQVPFSFSNLSMLSALDLSKNE 158

Query:   202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFST-----LTTLDLLYNQFDNSF 256
             L+ +  ++R      +L KLR+     +H   +   N S      L  L+L YN F +S 
Sbjct:   159 LTGSLSFVR------NLRKLRVLDVSYNHFSGILNPNSSLFELHHLIYLNLRYNNFTSSS 212

Query:   257 VPNWVFG-LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
             +P + FG L +L  LD+  N+F G +P  + NLT L  L L  N F  S+P  +    +L
Sbjct:   213 LP-YEFGNLNKLEVLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLP-LVQNLTKL 270

Query:   316 ESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG 375
               L +  N   G +  S+ ++  L S+ L+   LS  I    ++ +   SS LE L L G
Sbjct:   271 SILHLFGNHFSGTIPSSLFTMPFLSSIYLNKNNLSGSI----EVPNSSSSSRLEHLYL-G 325

Query:   376 SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-GHLSTLQFIDLSYNELNGMN---D 431
              +  G +   + +  NL  LDLS  +   PI  SL   L +L  +DLS + ++  +   D
Sbjct:   326 KNHLGKILEPIAKLVNLKELDLSFLNTSHPIDLSLFSSLKSLLLLDLSGDWISKASLTLD 385

Query:   432 NWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWS--SASQIY 489
             ++IP   L  L L HC + S FP+   +  +L Y+ LS + I+G  P   WS    S ++
Sbjct:   386 SYIPS-TLEVLRLEHCDI-SEFPNVFKTLHNLEYIALSNNRISGKFPEWLWSLPRLSSVF 443

Query:   490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHF 549
             + D       G    L N++ +++LSL +NS  GALP +  ++      +N   G I   
Sbjct:   444 ITDNLLTGFEGSSEVLVNSS-VQILSLDTNSLEGALPHLPLSINYFSAIDNRFGGDIPLS 502

Query:   550 ICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXX 609
             IC R+  L  L   Y   NF  G++  C     NL+ L L  N   G+            
Sbjct:   503 ICNRS-SLDVLDLSY--NNF-SGQIPPC---LSNLLYLKLRKNNLEGSIPDKYYVDTPLR 555

Query:   610 XXXXRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS 668
                   N L+G +  SL NC+AL  L V  N   +  P ++ +   ++ VL+L SN+F+ 
Sbjct:   556 SFDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFYL-KALPKLQVLLLSSNEFYG 614

Query:   669 -LLPKGLCDLAF--LQIVDLADNNLSGEVPRCIH-NLRAMV-TLNSHAGKAIQYQFLLYA 723
              L P     L F  L+I+++A N L+G +P     N +A   T+N   G  + Y  +++ 
Sbjct:   615 PLSPPNQGPLGFPELRILEIAGNKLTGSLPPDFFVNWKASSHTMNEDLGLYMVYSKVIFG 674

Query:   724 SRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNL 783
             +   +    ++   +  KG + E + +L     ID S N   G+IP  +  LKAL + NL
Sbjct:   675 NYHLTYYETID---LRYKGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNL 731

Query:   784 SNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSS 843
             SNN FTG IP S+  ++ +ES+D S NQLSG IP  +                 G+IP  
Sbjct:   732 SNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQG 791

Query:   844 TQLQSFDASSYAGN-DLCGAPLPRNCSEHVSTP-----EDENGDEDELDY-WLYVSIALG 896
             TQ+     SS+ GN  LCG PL  +C    + P     E+E  +EDE +  W   ++A+G
Sbjct:   792 TQITGQPKSSFEGNAGLCGFPLQESCFGTNAPPAQKPKEEEEAEEDEQELNWK--AVAIG 849

Query:   897 FMGGFWCLIGPLLASRRWRYK 917
             +  G   L+G  +A     YK
Sbjct:   850 Y--GVGVLLGLAIAQLIASYK 868

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 248/811 (30%), Positives = 374/811 (46%)

Query:   143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
             +L+ L+LSY      +P   GN   L+ L+L    L+ E    L  LS+L DLDLSY N 
Sbjct:   106 HLQSLDLSYNDLSCTLPDSSGNFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSY-ND 164

Query:   203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
                 + L     L  L  L L+ C+     P ++ N + LT LDL +N F    +P+ + 
Sbjct:   165 DLTGEILDSMGNLKHLRVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWNYFTGE-LPDSMG 223

Query:   263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSN 322
              L  L  L+L R NF G IP  L +L++L  L +  N F S  P+ +   NRL    +  
Sbjct:   224 NLKSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLML 283

Query:   323 NSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDI----FSGCVSSGLEILV------ 372
              +L       ++S  N    ML     S    E FDI    FSG + S L +L       
Sbjct:   284 LNLSSLTNVDLSS--NQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLD 341

Query:   373 LRGSSVSGHLTYKLGQFK---NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGM 429
             L  +  SG L  K+G      NL  L +  N+I GPIP S+  L  L  + LS+ +  G+
Sbjct:   342 LGTNDFSGPL--KIGNISSPSNLQELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGI 399

Query:   430 NDNWIPPFQLATL-GLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQI 488
              D  I   QL +L  L    +     S  H   H+ +L LS   I+   P  F  + + +
Sbjct:   400 VDFSIF-LQLKSLRSLDLSGINLNISSSHHLPSHMMHLILSSCNIS-QFPK-FLENQTSL 456

Query:   489 YVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIF 547
             Y LD+S NQI GQ+P  L     L  +++  N+FSG L ++ + +     S+N  SG I 
Sbjct:   457 YHLDISANQIEGQVPEWLWRLPTLRYVNIAQNAFSGELTMLPNPIYSFIASDNKFSGEIP 516

Query:   548 HFICYRAHELKKLQFLYLRGNFLQGELTDCW-MNYQNLMILDLSNNKFTGNXXXXXXXXX 606
               +C       ++  L L  N   G +  C+ ++ + L IL L NN  +G          
Sbjct:   517 RAVC-------EIGTLVLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSG-VIPEESLHG 568

Query:   607 XXXXXXXRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNK 665
                      N LSG    SL NC+ L  L+V EN   +  P+W+ +    + +L+LRSN+
Sbjct:   569 YLRSLDVGSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWL-KSLPNLQLLVLRSNE 627

Query:   666 FHSLL--PKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYA 723
             FH  +  P      + L+  D+++N  SG +P            +   G ++   F+   
Sbjct:   628 FHGPIFSPGDSLSFSKLRFFDISENRFSGVLPS-----------DYFVGWSVMSSFVDII 676

Query:   724 SRAPSTAMLLED-------ALVVMKGRAAEYKCI-LNLVRIIDFSKNNFSGKIPLEVTNL 775
                P   ++ +D        ++ +KG   E       + + ID S N   G IP  +  L
Sbjct:   677 DNTPGFTVVGDDQESFHKSVVLTIKGLNMELVGSGFEIYKTIDVSGNRLEGDIPESIGIL 736

Query:   776 KALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXX 835
             K L   N+SNN FTG IP S+  + +L+S+D S N+LSG IP  +               
Sbjct:   737 KELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNM 796

Query:   836 XTGKIPSSTQLQSFDASSYAGND-LCGAPLPRNCSEHVSTPEDENGDEDELDYWL-YVSI 893
               G IP  TQ+QS ++SS+A N  LCGAPL + C       E+E+ +++E D  L +V+ 
Sbjct:   797 LEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKKCGGE----EEEDKEKEEKDKGLSWVAA 852

Query:   894 ALGFMGGFWC--LIGPLLAS--RRWRYKYYN 920
             A+G++ G +C   IG +L S  R W  + ++
Sbjct:   853 AIGYVPGLFCGLAIGHILTSYKRDWFMRIFS 883

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 247/801 (30%), Positives = 367/801 (45%)

Query:   144 LRYLNLSYTQFVGM-IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
             LRY++L         +P   GNL  L+ L LS N    +       L+ L  LDLSY  L
Sbjct:   100 LRYVDLQNNNLTSSSLPSGFGNLKRLEGLFLSSNGFLGQVPSSFSNLTMLAQLDLSYNKL 159

Query:   203 SKASDWLRVTNTLPSLVKLRLSRCQLHHL--PPLAIANFSTLTTLDLLYNQFDNSFVPNW 260
             + +   +R    L  L+ L LS         P  ++     L  L+L +N F +S +P+ 
Sbjct:   160 TGSFPLVR---GLRKLIVLDLSYNHFSGTLNPNSSLFELHQLRYLNLAFNNFSSS-LPSK 215

Query:   261 VFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGV 320
                L +L  L L  N F G +P  + NLT L  L LD N+  SS P  +     L  L +
Sbjct:   216 FGNLHRLENLILSSNGFSGQVPSTISNLTRLTKLYLDQNKLTSSFP-LVQNLTNLYELDL 274

Query:   321 SNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG 380
             S N   G +  S+ +L  L  + L    L+  +    ++ +   SS LEI+ L  +   G
Sbjct:   275 SYNKFFGVIPSSLLTLPFLAHLALRENNLAGSV----EVSNSSTSSRLEIMYLGSNHFEG 330

Query:   381 HLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-GHLSTLQFIDLSYNELNGMN---DNWIPP 436
              +   + +  NL +LDLS  +   PI   L   L +L+ +DLS N ++  +   D++IP 
Sbjct:   331 QILEPISKLINLKHLDLSFLNTSYPIDLKLFSSLKSLRSLDLSGNSISSASLSSDSYIP- 389

Query:   437 FQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWS-SASQIYVLDLS- 494
               L  L LRHC + + FP+ L + K L Y+D+S + + G IP   WS    Q   L  + 
Sbjct:   390 LTLEMLTLRHCDI-NEFPNILKTLKELVYIDISNNRMKGKIPEWLWSLPLLQSVTLGNNY 448

Query:   495 FNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRA 554
             F    G    L N++ L +L L SN+F GALP +  ++     ++NS +  I   IC R+
Sbjct:   449 FTGFQGSAEILVNSSVL-LLYLDSNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICNRS 507

Query:   555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXXXR 614
               L  +   Y   NF  G +  C    +NL ++ L NN   G+                 
Sbjct:   508 -SLAAIDLSY--NNFT-GPIPPC---LRNLELVYLRNNNLEGSIPDALCDGASLRTLDVS 560

Query:   615 KNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS-LLPK 672
              N L+G +  S  NC++L  L V  N   +  P W+ +    + VL LRSN+F+  + P 
Sbjct:   561 HNRLTGKLPRSFVNCSSLKFLSVINNRIEDTFPFWL-KALPNLQVLTLRSNRFYGPISPP 619

Query:   673 GLCDLAF--LQIVDLADNNLSGEVP-RCIHNLRAMV-TLNSHAGKAIQYQFLLYASRAPS 728
                 L F  L+I +++DN  +G +P     N +A   T+N   G  + Y+  L+      
Sbjct:   620 HQGPLGFPELRIFEISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYMVYEEKLFDEGGYG 679

Query:   729 TAMLLEDALVVM-KGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNF 787
                   DAL +  KG   E    L     IDFS N   G+IP  +  LKAL + N+SNN 
Sbjct:   680 YT----DALDLQYKGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAVNISNNA 735

Query:   788 FTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQ 847
             FTG IP S+  + +LES+D S NQLSG IP  +                TG+IP  TQ+ 
Sbjct:   736 FTGHIPLSMANLENLESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTGEIPQGTQIT 795

Query:   848 SFDASSYAGN-DLCGAPLPRNCSEHVSTP----------EDENGDEDELDYWLYVSIALG 896
                 SS+ GN  LCG PL  +C    + P          E+E  +E+E +     ++A+G
Sbjct:   796 GQSKSSFEGNAGLCGLPLKESCFGTGAPPMYHQKQEDKEEEEEEEEEEEEVLNGRAVAIG 855

Query:   897 FMGGFWCLIGPLLASRRWRYK 917
             +  G   L+G  +A     YK
Sbjct:   856 YGSGL--LLGLAIAQVIASYK 874

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 245/805 (30%), Positives = 373/805 (46%)

Query:   144 LRYLNLSYTQFV-GMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
             LR+L LSY  F    IP + G L+ L+ L +S      +       LS L  L L +  L
Sbjct:   101 LRHLYLSYNNFTPSSIPSEFGMLNKLEVLFMSTGGFLGQVPSSFSNLSMLSALLLHHNEL 160

Query:   203 SKASDWLRVTNTLPSLVKLRLSRCQLHHL--PPLAIANFSTLTTLDLLYNQFDNSFVPNW 260
             + +  ++R    L  L  L +S         P  ++     L  LDL  N F +S +P +
Sbjct:   161 TGSLSFVR---NLRKLTILDVSHNHFSGTLNPNSSLFELHNLAYLDLGSNNFTSSSLP-Y 216

Query:   261 VFG-LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLG 319
              FG L +L  LD+  N+F G +P  + NLT L  L L  N F  S+P  +    +L  L 
Sbjct:   217 EFGNLNKLELLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLP-LVQNLTKLSILH 275

Query:   320 VSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVS 379
             +S+N   G +  S+ ++  L  + L    LS  I    ++ +  +SS LE L L  +   
Sbjct:   276 LSDNHFSGTIPSSLFTMPFLSYLDLGGNNLSGSI----EVPNSSLSSRLENLNLGENHFE 331

Query:   380 GHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-GHLSTLQFIDLSYNELNGMN---DNWIP 435
             G +   + +  NL  L LS  +   PI   L   L  L  +DLS   ++  +   D++IP
Sbjct:   332 GKIIEPISKLINLKELHLSFLNTSYPINLKLFSSLKYLLLLDLSGGWISQASLSLDSYIP 391

Query:   436 PFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWS--SASQIYVLDL 493
                L  L L+HC++ S FP+ L +  +L ++ LS + I+G IP   WS    S +++ + 
Sbjct:   392 S-TLEALLLKHCNI-SVFPNILKTLPNLEFIALSTNKISGKIPEWLWSLPRLSSVFIEEN 449

Query:   494 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYR 553
              F    G    L N++ + +L+L SN+  GALP +  ++      NN   G I   IC R
Sbjct:   450 LFTGFEGSSEILVNSS-VRILNLLSNNLEGALPHLPLSVNYFSARNNRYGGDIPLSICSR 508

Query:   554 AHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXXX 613
                 + L FL L  N   G +  C  N+   +IL+L  N   G+                
Sbjct:   509 ----RSLVFLDLSYNNFTGPIPPCPSNF---LILNLRKNNLEGSIPDTYYADAPLRSLDV 561

Query:   614 RKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS-LLP 671
               N L+G +  SL NC+AL  L V  N   +  P  + +   ++ VLIL SN F+  L P
Sbjct:   562 GYNRLTGKLPRSLLNCSALQFLSVDHNGIKDTFPFSL-KALPKLQVLILHSNNFYGPLSP 620

Query:   672 KGLCDLAF--LQIVDLADNNLSGEVPR-CIHNLRAM-VTLNSHAGKAIQYQFLLYASRAP 727
                  L F  L+I+++A N  +G +P     N +A  +T+N   G  + Y  ++Y +   
Sbjct:   621 PNQGSLGFPELRILEIAGNKFTGSLPPDFFENWKASSLTMNEDQGLYMVYNKVVYGTYYF 680

Query:   728 STAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNF 787
             ++   LE   +  KG + E   +L+    IDFS N   G+IP  +  LKAL + NLSNN 
Sbjct:   681 TS---LEAIDLQYKGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNA 737

Query:   788 FTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQ 847
             FTG IP S+  ++ +ES+D S NQLSG IP  +                 G+IP  TQ+ 
Sbjct:   738 FTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQIT 797

Query:   848 SFDASSYAGN-DLCGAPLPRNC-------SEHVSTPEDENGDEDELDYWLYVSIALGFMG 899
                 SS+ GN  LCG PL  +C       ++H    E+E  +E+++  W  V I  G   
Sbjct:   798 GQPKSSFEGNAGLCGLPLQESCFGTNAPPAQHPKEEEEEEEEEEQVLNWKGVGIGYGVGV 857

Query:   900 GFWCLIGPLLASRRWRYKYYNFLDR 924
                  I  L+AS +  +  + F  R
Sbjct:   858 LLGLAIAQLIASYKPEWLVFLFQSR 882

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 254/816 (31%), Positives = 384/816 (47%)

Query:   127 NDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL 186
             ND  G +IP  I ++ +L  L+LSY QF+G+IP  + NLS L  L LS N    +    +
Sbjct:   135 NDLDG-EIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQIPSSI 193

Query:   187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLD 246
               LS L  L+LS    S       + N L +L  L L         P +I N + LT L 
Sbjct:   194 GNLSHLTSLELSSNQFSGQIP-SSIGN-LSNLTFLSLPSNDFFGQIPSSIGNLARLTYLY 251

Query:   247 LLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIP 306
             L YN F    +P+    L QL+ L +  N   G +P  L NLT L  LLL  N+F  +IP
Sbjct:   252 LSYNNFVGE-IPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIP 310

Query:   307 NWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSS 366
             N +   + L     SNN+  G +  S+ ++  L  + LS  +L+  +   F   S    S
Sbjct:   311 NNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLH--FGNISS--PS 366

Query:   367 GLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSN-NSIVGPIPFSL-GHLSTLQFIDLSYN 424
              L+ L++  ++  G +   L +F NL   DLS+ N+   P+ FS+  HL +L  + LSY 
Sbjct:   367 NLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFSIFSHLKSLDDLRLSYL 426

Query:   425 ELNGMNDNWIPPF--QLATLGLRHCHLGSRFPSWLHSQ---KHLNYLDLSYSGITGSIPN 479
                 ++ N I P+   L +L +    + +   S + S    + +  L LS  GIT   P 
Sbjct:   427 TTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLSGCGIT-DFPE 485

Query:   480 IFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSF-----SGALPLISS--- 530
             I   +  ++  LD+S N+I GQ+P  L     L  L+L +N+F     S     +SS   
Sbjct:   486 IL-RTQHELGFLDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFISFESSSKKHGLSSVRK 544

Query:   531 -NLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQN-LMILD 588
              ++I L  SNN+ +G I  FIC     L+ L  L L  N   G +  C    ++ L +L+
Sbjct:   545 PSMIHLFASNNNFTGKIPSFIC----GLRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLN 600

Query:   589 LSNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPT 647
             L  N  +G                   N L G +  SL   + L  L+V  N   +  P 
Sbjct:   601 LRQNNLSGGLPKHIFESLRSLDVGH--NLLVGKLPRSLIRFSNLEVLNVESNRINDTFPF 658

Query:   648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVT 706
             W+    S++ VL+LRSN FH   P        L+I+D++ N+ +G +P        AM +
Sbjct:   659 WLSS-LSKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNHFNGTLPTEYFVKWSAMSS 715

Query:   707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVM-KGRAAEYKCILNLVRIIDFSKNNFS 765
             L  +  ++ + +++        + +  +D++V+M KG A E   IL +   +DFS N F 
Sbjct:   716 LGKNEDQSNE-KYM-------GSGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFE 767

Query:   766 GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXX 825
             G+IP  +  LK L   NLSNN F G IP S+G + +LES+D S N+L+GEIPQ +     
Sbjct:   768 GEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSF 827

Query:   826 XXXXXXXXXXXTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNC-------SEHVSTPED 877
                         G +P  TQ +  + S++  N  L G  L   C       S+   T E 
Sbjct:   828 LAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTET 887

Query:   878 ENGDEDELDYWLYVSIALGFMGG--FWCLIGPLLAS 911
             E  DE+E+  W  ++ A+GF+ G  F   IG +L S
Sbjct:   888 EEEDEEEIS-W--IAAAIGFIPGIVFGLTIGYILVS 920

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 243/799 (30%), Positives = 374/799 (46%)

Query:   144 LRYLNLSYTQFVGM-IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
             LR L L +  F    I  + G L+ L+ L LS +    +  +    LS L  LDLS   L
Sbjct:   100 LRSLLLIHNNFTSSSISSKFGMLNKLEVLFLSSSGFLGQVPFSFSNLSMLSALDLSDNEL 159

Query:   203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFST-----LTTLDLLYNQFDNSFV 257
             + +  ++R      +L KLR+     +H   +   N S      LT L L  N F +S +
Sbjct:   160 TGSLSFVR------NLRKLRVLDVSYNHFSGILNPNSSLFELHHLTYLSLGSNSFTSSTL 213

Query:   258 PNWVFG-LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLE 316
             P + FG L +L  LD+  N+F G +P  + NLT L  L L  N F  S+P  +    +L 
Sbjct:   214 P-YEFGNLNKLELLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLP-LVQNLTKLS 271

Query:   317 SLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS 376
              L +  N   G +  S+ ++  L  + L    L+  I    ++ +   SS LE L L  +
Sbjct:   272 ILALFGNHFSGTIPSSLFTMPFLSYLSLKGNNLNGSI----EVPNSSSSSRLESLYLGKN 327

Query:   377 SVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-GHLSTLQFIDLSYNELN--GMN-DN 432
                G +   + +  NL  LDLS  S   PI  SL     +L  +DL+ + ++  G++ D+
Sbjct:   328 HFEGKILKPISKLINLKELDLSFLSTSYPIDLSLFSSFKSLLVLDLTGDWISQAGLSSDS 387

Query:   433 WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWS--SASQIYV 490
             +I    L  L ++ C++ S FP+ L S  +L  +D+S + ++G IP   WS    S +++
Sbjct:   388 YIS-LTLEALYMKQCNI-SDFPNILKSLPNLECIDVSNNRVSGKIPEWLWSLPRLSSVFI 445

Query:   491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFI 550
              D       G    L N++ +++L L SNS  GALP +  ++I      N   G I   I
Sbjct:   446 GDNLLTGFEGSSEILVNSS-VQILVLDSNSLEGALPHLPLSIIYFSARYNRFKGDIPLSI 504

Query:   551 CYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXX 610
             C R+     L  L LR N   G +  C     NL+ L+L  N   G+             
Sbjct:   505 CNRS----SLDVLDLRYNNFTGPIPPC---LSNLLFLNLRKNNLEGSIPDTYFADAPLRS 557

Query:   611 XXXRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS- 668
                  N L+G +  SL NC+AL  L V  N   +  P ++ +   ++ VL+L SNKF+  
Sbjct:   558 LDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIEDTFPFYL-KVLPKLQVLLLSSNKFYGP 616

Query:   669 LLPKGLCDLAF--LQIVDLADNNLSGEVPRCIH-NLRAM-VTLNSHAGKAIQYQFLLYAS 724
             L P     L F  L+I+++A N L+G +P+    N +A  +T+N   G  + Y  ++Y  
Sbjct:   617 LSPPNQGSLGFPELRILEIAGNKLTGSLPQDFFVNWKASSLTMNEDQGLYMVYSKVVYGI 676

Query:   725 RAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLS 784
                S    ++   +  KG + E K +L     ID S N   G+IP  +  LKAL + NLS
Sbjct:   677 YYLSYLATID---LQYKGLSMEQKWVLTSSATIDLSGNRLEGEIPESIGLLKALIALNLS 733

Query:   785 NNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSST 844
             NN FTG IP S+  +  +ES+D S NQLSG IP  +                 G+IP  T
Sbjct:   734 NNAFTGHIPLSLANLVKIESLDLSSNQLSGTIPNGLGTLSFLAYVNVSHNQLNGEIPQGT 793

Query:   845 QLQSFDASSYAGN-DLCGAPLPRNCSEHVSTP-----EDENGDEDELDYWLYVSIALGFM 898
             Q+     SS+ GN  LCG PL + C    + P     E+E+ +++++  W    +A+G+ 
Sbjct:   794 QITGQPKSSFEGNAGLCGLPLQQRCFGTNAPPAHQFKEEEDEEQEQVLNW--EGVAIGY- 850

Query:   899 GGFWCLIGPLLASRRWRYK 917
              G   L+G  +A     YK
Sbjct:   851 -GVGVLLGLAIAQLIASYK 868

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 223/750 (29%), Positives = 345/750 (46%)

Query:   187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL----PPLAIANFSTL 242
             P     K   L  + LS  S +  + ++L +L +L L     ++L    PP +I N S L
Sbjct:   100 PNSGLFKLQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQVPP-SIGNLSRL 158

Query:   243 TTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN 302
             T LDL  N+     +P  +  L QL +L    N F G IP    NLT L  + L +N F 
Sbjct:   159 TILDLWDNKLVGQ-LPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFE 217

Query:   303 SSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSG 362
             S +P  +  F  L+   V  NS  G + +S+ ++ +LR   L        I E  +++S 
Sbjct:   218 SMLPLDMSGFQNLDYFNVGENSFSGTLPKSLFTIPSLRWANLEGNMFKGPI-EFRNMYSP 276

Query:   363 CVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422
               S+ L+ L L  +   G +   L Q+ NL  LDLS N++ G  P  L  + TL+ ++L 
Sbjct:   277 --STRLQYLFLSQNKFDGPIPDTLSQYLNLIELDLSFNNLTGSFPTFLFTIPTLERVNLE 334

Query:   423 YNELNGMND--NWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNI 480
              N L G  +  N      L  L           P  +    +L  L LS++   G+IP  
Sbjct:   335 GNHLKGPVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTIPRS 394

Query:   481 FWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGS-NSFSGALPLISSNLIE-LDFS 538
               S  +++    L  N + G++P+      +  LS  S NSF  +   +    ++ LD S
Sbjct:   395 I-SKLAKLEYFCLEDNNMVGEVPSWLWRLTMVALSNNSFNSFGESSEGLDETQVQWLDLS 453

Query:   539 NNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ-NLMILDLSNNKFTGN 597
             +NS  G   H+IC    +L+ L+ L +  N   G +  C  ++  +L  L L NN  +G 
Sbjct:   454 SNSFQGPFPHWIC----KLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGP 509

Query:   598 XXXXXXXXXXXXXXXXRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRM 656
                              +N L G +  SL +C A+  L+V  N+  +  P+W+G   S +
Sbjct:   510 LPDIFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPS-L 568

Query:   657 VVLILRSNKFHSLLPKGLCDLAF--LQIVDLADNNLSGEVPRC-IHNLRAMVTLNSHAGK 713
              VLILRSN+F+  L +    + F  L+++D++ N+L G +P     + R M  L    G 
Sbjct:   569 HVLILRSNEFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFYFSSWREMSRLTGEDGD 628

Query:   714 AIQYQFLLYASRA-PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEV 772
               +     Y  +   +TA  ++   +V KG   E+K I    ++I+FS N FSG IP  +
Sbjct:   629 -FRLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESI 687

Query:   773 TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXX 832
               LK L+  NLS+N FTG IP+S+  +  LE++D SLNQLSG+IPQ +            
Sbjct:   688 GLLKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFS 747

Query:   833 XXXXTGKIPSSTQLQSFDASSYAGNDLCGAPLPRNCSE--HVSTPE-DENGD----EDEL 885
                  G +P STQ Q  + S++  N      L   C E   V  P+  E+ D    E+ +
Sbjct:   748 YNFLEGPVPKSTQFQGQNCSAFMENPKLNG-LEEICRETDRVPNPKPQESKDLSEPEEHV 806

Query:   886 DYWLYVSIALGFMGGFWC--LIGPLLASRR 913
               W+   IA G   G  C  +IG +  S +
Sbjct:   807 INWIAAGIAYG--PGVVCGLVIGHIFLSHK 834

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	938
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-53
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  219 bits (559), Expect = 3e-59
 Identities = 197/637 (30%), Positives = 288/637 (45%), Gaps = 72/637 (11%)

Query: 3   GVLVFAFLLFELLAIATVSVSFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGY 62
             L+F                F N S  H   LE     LL FK  + DP   L++W   
Sbjct: 10  PYLIFMLFFL-----------FLNFSMLHAEELE----LLLSFKSSINDPLKYLSNWNSS 54

Query: 63  EDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYL 122
            D C W G+ C+N +  +V ++L                   + GK++ ++  L ++  +
Sbjct: 55  ADVCLWQGITCNNSS-RVVSIDL---------------SGKNISGKISSAIFRLPYIQTI 98

Query: 123 DLSYNDFQGVQIPRFI-CSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE 181
           +LS N   G  IP  I  +  +LRYLNLS   F G IP   G++ NL+ LDLS N L  E
Sbjct: 99  NLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE 155

Query: 182 NLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFST 241
               +   S LK LDL   N+        +TN L SL  L L+  QL    P  +    +
Sbjct: 156 IPNDIGSFSSLKVLDLGG-NVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKS 213

Query: 242 LTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRF 301
           L  + L YN      +P  + GL  L  LDL  NN  GPIP  L NL +L++L L  N+ 
Sbjct: 214 LKWIYLGYNNLSGE-IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 302 NSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFS 361
           +  IP  ++   +L SL +S+NSL G +   +  L NL  + L     + +I        
Sbjct: 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL---- 328

Query: 362 GCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL---GHLSTLQF 418
                 L++L L  +  SG +   LG+  NL  LDLS N++ G IP  L   G+L  L  
Sbjct: 329 -TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI- 386

Query: 419 IDLSYNELNGMNDNWIPPF-----QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGI 473
             L  N L G     IP        L  + L+        PS       + +LD+S + +
Sbjct: 387 --LFSNSLEGE----IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Query: 474 TGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPL---ISS 530
            G I +  W     + +L L+ N+  G +P+   + +LE L L  N FSGA+P      S
Sbjct: 441 QGRINSRKW-DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 531 NLIELDFSNNSISGSIFHFICYRAHEL---KKLQFLYLRGNFLQGELTDCWMNYQNLMIL 587
            L++L  S N +SG I         EL   KKL  L L  N L G++   +     L  L
Sbjct: 500 ELMQLKLSENKLSGEI-------PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS 624
           DLS N+ +G +P +LG++ SL  +++  N+L G++ S
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  213 bits (543), Expect = 3e-57
 Identities = 194/670 (28%), Positives = 307/670 (45%), Gaps = 110/670 (16%)

Query: 238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT-SLKHLLL 296
           N S + ++DL             +F L  +  ++L  N   GPIP+ +   + SL++L L
Sbjct: 67  NSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI 356
            +N F  SIP        LE+L +SNN L G +   + S  +L+ + L    L  +I   
Sbjct: 126 SNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-- 181

Query: 357 FDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTL 416
                  ++S LE L L  + + G +  +LGQ K+L ++ L  N++ G IP+ +G L++L
Sbjct: 182 --NSLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 417 QFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476
             +DL YN L G                         PS L + K+L YL L  + ++G 
Sbjct: 239 NHLDLVYNNLTG-----------------------PIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 477 IPN-IFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ-LEVLSLGSNSFSGALPLISSNLIE 534
           IP  IF  S  ++  LDLS N + G+IP L    Q LE+L L SN+F+G +P+  ++L  
Sbjct: 276 IPPSIF--SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-- 331

Query: 535 LDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKF 594
                                   +LQ L L  N   GE+      + NL +LDLS N  
Sbjct: 332 -----------------------PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 595 TGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERF 653
           TG +P  L S  +L  L L  N+L G I  SL  C +L  + + +N F   +P+     F
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS----EF 424

Query: 654 SRMVV---LILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSH 710
           +++ +   L + +N     +     D+  LQ++ LA N   G +P          +  S 
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD---------SFGSK 475

Query: 711 AGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPL 770
             + +      ++   P     L +   +M+               +  S+N  SG+IP 
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSE---LMQ---------------LKLSENKLSGEIPD 517

Query: 771 EVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLN 830
           E+++ K L S +LS+N  +G+IP S   M  L  +D S NQLSGEIP+++ ++  L  +N
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577

Query: 831 LSNNNLTGKIPSSTQLQSFDASSYAGN-DLCG---APLPRNCSEHVSTPEDENGDEDELD 886
           +S+N+L G +PS+    + +AS+ AGN DLCG         C     TP           
Sbjct: 578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPS---------- 627

Query: 887 YWLYVSIALG 896
           +W Y++  LG
Sbjct: 628 WWFYITCTLG 637

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  200 bits (511), Expect = 4e-53
 Identities = 181/597 (30%), Positives = 272/597 (45%), Gaps = 84/597 (14%)

Query: 264 LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS------IPNWL----YRFN 313
           +  L FL L   NF     E L+ L S K  + D  ++ S+      +  W        +
Sbjct: 13  IFMLFFLFL---NFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSS 69

Query: 314 RLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVL 373
           R+ S+ +S  ++ G++  ++  L  ++++ LS  +LS  I +  DIF+   SS L  L L
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD--DIFT--TSSSLRYLNL 125

Query: 374 RGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNW 433
             ++ +G +    G   NL  LDLSNN + G IP  +G  S+L+ +DL  N L G     
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK---- 179

Query: 434 IPPF-----QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQI 488
           IP        L  L L    L  + P  L   K L ++ L Y+ ++G IP       + +
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSL 238

Query: 489 YVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIF 547
             LDL +N + G IP +L N   L+ L L  N  SG +P                  SIF
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-----------------PSIF 281

Query: 548 HFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 607
                    L+KL  L L  N L GE+ +  +  QNL IL L +N FTG +P++L SL  
Sbjct: 282 --------SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 608 LQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKF 666
           LQ L L  N  SG I  +L     L  LD+  N     IP  +      +  LIL SN  
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSL 392

Query: 667 HSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRA 726
              +PK L     L+ V L DN+ SGE+P     L  +  L+                  
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN------------- 439

Query: 727 PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNN 786
                        ++GR    K  +  ++++  ++N F G +P +    K L++ +LS N
Sbjct: 440 -------------LQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRN 485

Query: 787 FFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS 843
            F+G +P  +G++  L  +  S N+LSGEIP  +SS   L  L+LS+N L+G+IP+S
Sbjct: 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 98.3 bits (245), Expect = 5e-21
 Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 20/146 (13%)

Query: 766 GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTY 825
           G IP +++ L+ LQS NLS N   G IP S+G++ SLE +D S N  +G IP+S+  LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 826 LNHLNLSNNNLTGKIPSST-----QLQSFDASSYAGNDLCGAPLPRNCSEHVSTPEDENG 880
           L  LNL+ N+L+G++P++         SF+ +  AG  LCG P  R C  H+S       
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG--LCGIPGLRACGPHLSVGAK--- 546

Query: 881 DEDELDYWLYVSIALGFMGGFWCLIG 906
                     + IA G    F  L+ 
Sbjct: 547 ----------IGIAFGVSVAFLFLVI 562

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.0 bits (218), Expect = 1e-17
 Identities = 98/362 (27%), Positives = 160/362 (44%), Gaps = 39/362 (10%)

Query: 105 LVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGN 164
           L G++   ++ L++L  L L  N+F G +IP  + S+  L+ L L   +F G IP  LG 
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 165 LSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLS 224
            +NL  LDLS N L  E          + +   S  NL K    +  +N+L   +   L 
Sbjct: 355 HNNLTVLDLSTNNLTGE----------IPEGLCSSGNLFKL---ILFSNSLEGEIPKSLG 401

Query: 225 RCQLHHLPPLAIANFS-----TLTTLDLLY--NQFDNSF---VPNWVFGLIQLVFLDLRR 274
            C+      L   +FS       T L L+Y  +  +N+    + +  + +  L  L L R
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N F G +P+   +   L++L L  N+F+ ++P  L   + L  L +S N L G +   ++
Sbjct: 462 NKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
           S   L S+ LS  +LS +I   F          L  L L  + +SG +   LG  ++L  
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPV-----LSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFP 454
           +++S+N + G +P +   L+          +L G +          T GL  C    + P
Sbjct: 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD---------TTSGLPPCKRVRKTP 626

Query: 455 SW 456
           SW
Sbjct: 627 SW 628

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 50/153 (32%), Positives = 67/153 (43%), Gaps = 29/153 (18%)

Query: 35  LESERRALLRFKQDLQDPSNRLASWIGYEDCCA-----WAGVVC--DNVTGH--IVELNL 85
           L  E  AL   K  L  P  R   W G  D C      W+G  C  D+  G   I  L L
Sbjct: 370 LLEEVSALQTLKSSLGLPL-RFG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGL 425

Query: 86  RNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLR 145
            N                 L G +   +  L+HL  ++LS N  +G  IP  + S+ +L 
Sbjct: 426 DN---------------QGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLE 469

Query: 146 YLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFL 178
            L+LSY  F G IP  LG L++L+ L+L+ N L
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 28/66 (42%), Positives = 42/66 (63%)

Query: 557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 616
           L+ LQ + L GN ++G +     +  +L +LDLS N F G++P SLG L SL+ L+L  N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 617 NLSGTI 622
           +LSG +
Sbjct: 501 SLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 570 LQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNC 628
           L+G + +     ++L  ++LS N   GN+P SLGS+ SL+ L L  N+ +G+I  SL   
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 629 TALLTLDVGENEFVENIPTWIGER 652
           T+L  L++  N     +P  +G R
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 3e-07
 Identities = 34/82 (41%), Positives = 46/82 (56%)

Query: 248 LYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPN 307
           L NQ    F+PN +  L  L  ++L  N+ +G IP  L ++TSL+ L L  N FN SIP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 308 WLYRFNRLESLGVSNNSLQGRV 329
            L +   L  L ++ NSL GRV
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 6e-07
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 380 GHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNG 428
           G +   + + ++L  ++LS NSI G IP SLG +++L+ +DLSYN  NG
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 35 LESERRALLRFKQDLQ-DPSNRLASWIGY-EDCCAWAGVVCD 74
          L  +R ALL FK  L  DPS  L+SW     D C+W GV CD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 11/171 (6%)

Query: 483 SSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF---SGALPLISSNLIELDFSN 539
            +   +  LDL+ N++   I  L     L  L L +N+       + L+ SNL ELD S+
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 540 NSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLP 599
           N I  S+   +      L  L+ L L  N L  +L     N  NL  LDLS NK + +LP
Sbjct: 150 NKIE-SLPSPLRN----LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLP 202

Query: 600 ISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIG 650
             +  L +L+ L L  N++   + SL N   L  L++  N+  E++P  IG
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIG 252

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 76/294 (25%), Positives = 119/294 (40%), Gaps = 24/294 (8%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
            L  L+L+  +    I   L  L+NL  LDL  N     N+  +P L  L   +L  ++L
Sbjct: 94  PLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNN-----NITDIPPLIGLLKSNLKELDL 147

Query: 203 S--KASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNW 260
           S  K          LP+L  L LS   L  LP L     S L  LDL  N+  +  +P  
Sbjct: 148 SDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKISD--LPPE 204

Query: 261 VFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGV 320
           +  L  L  LDL  NN    +   L NL +L  L L +N+    +P  +   + LE+L +
Sbjct: 205 IELLSALEELDLS-NNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDL 262

Query: 321 SNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG 380
           SNN      I S++SL +L ++    +  +   + +  I    +        L  + +  
Sbjct: 263 SNN-----QISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLL-----ELLLNLLLT 312

Query: 381 HLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI 434
               +L     L   ++ +N      P +L  L +L  +    N L+  N N  
Sbjct: 313 LKALELKLNSILLNNNILSNGETS-SPEALSILESLNNLWTLDNALDESNLNRY 365

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 34/128 (26%)

Query: 301 FNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIF 360
           F+S+   W      ++ LG+ N  L+G +   ++ L +L+S+ LS               
Sbjct: 411 FDSTKGKWF-----IDGLGLDNQGLRGFIPNDISKLRHLQSINLS--------------- 450

Query: 361 SGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFID 420
                         G+S+ G++   LG   +L  LDLS NS  G IP SLG L++L+ ++
Sbjct: 451 --------------GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 421 LSYNELNG 428
           L+ N L+G
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 778 LQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNL 836
           L+S +LSNN  T     +   + +L+ +D S N L+   P++ S L  L  L+LS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 56/160 (35%)

Query: 447 CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NL 505
           C   S    W      ++ L L   G+ G IPN   S    +  ++LS N I G IP +L
Sbjct: 409 CQFDSTKGKWF-----IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSL 462

Query: 506 TNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYL 565
            +   LEVL L  NSF+G++P              S+                       
Sbjct: 463 GSITSLEVLDLSYNSFNGSIP-------------ESL----------------------- 486

Query: 566 RGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSL 605
                 G+LT       +L IL+L+ N  +G +P +LG  
Sbjct: 487 ------GQLT-------SLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMG-NLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            LL+L +L+ LDL  N+     IP  I  +  NL+ L+LS  + +  +P  L NL NL+ 
Sbjct: 111 ELLELTNLTSLDLDNNNI--TDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKN 167

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           LDLS+N L  +    L  LS L +LDLS   +S     + + + L  L     S  +L  
Sbjct: 168 LDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-- 224

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
               +++N   L+ L+L  N+ ++   P  +  L  L  LDL  N  Q      L +LT+
Sbjct: 225 --LSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNN--QISSISSLGSLTN 278

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLG 319
           L+ L L  N  ++++P        LE L 
Sbjct: 279 LRELDLSGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 83/344 (24%), Positives = 125/344 (36%), Gaps = 61/344 (17%)

Query: 497 QIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHF-ICYRAH 555
           Q        +N   + V  L  N  S  L L+ S+L  L   +      I          
Sbjct: 31  QSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLL 90

Query: 556 ELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 615
            L  L  L L  N L+  +++  +   NL  LDL NN  T   P+      +L+ L L  
Sbjct: 91  NLLPLPSLDLNLNRLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 616 NNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLC 675
           N +      L+N   L  LD+  N+  +                          LPK L 
Sbjct: 150 NKIESLPSPLRNLPNLKNLDLSFNDLSD--------------------------LPKLLS 183

Query: 676 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED 735
           +L+ L  +DL+ N +S ++P  I  L A+  L+      I+   LL +         LE 
Sbjct: 184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE---LLSSLSNLKNLSGLEL 239

Query: 736 ALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPES 795
           +                         NN    +P  + NL  L++ +LSNN        S
Sbjct: 240 S-------------------------NNKLEDLPESIGNLSNLETLDLSNN--QISSISS 272

Query: 796 IGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK 839
           +G++ +L  +D S N LS  +P    +L  L    L N  LT K
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPL--IALLLLLLELLLNLLLTLK 314

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 60/271 (22%), Positives = 88/271 (32%), Gaps = 44/271 (16%)

Query: 413 LSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRF-----------PSWLHSQK 461
           L  LQ + L  N L       +         L+   L                  L    
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81

Query: 462 HLNYLDLSYSGITGSIPNIFWSSASQIY---VLDLSFNQIHGQIPNLTNAA------QLE 512
            L  LDLS + +          S  +      L L+ N +  +   L           LE
Sbjct: 82  GLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 513 VLSLGSNSFSG--------ALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLY 564
            L LG N   G        AL      L EL+ +NN I  +    +         L+ L 
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199

Query: 565 LRGNFLQGE----LTDCWMNYQNLMILDLSNNKFTGN-----LPISLGSLISLQSLHLRK 615
           L  N L  E    L +   + ++L +L+L +N  T           L   ISL +L L  
Sbjct: 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259

Query: 616 NNLSGT-----IHSLKNCTALLTLDVGENEF 641
           N+++          L    +LL LD+  N+F
Sbjct: 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 33/131 (25%)

Query: 294 LLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEI 353
           L LD+      IPN + +   L+S+ +S NS++G +  S+ S+                 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI----------------- 465

Query: 354 SEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLG-- 411
                       + LE+L L  +S +G +   LGQ  +L  L+L+ NS+ G +P +LG  
Sbjct: 466 ------------TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Query: 412 --HLSTLQFID 420
             H ++  F D
Sbjct: 514 LLHRASFNFTD 524

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 756 IIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGA 798
           ++D S N+F+G IP  +  L +L+  NL+ N  +GR+P ++G 
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 28/97 (28%)

Query: 213 NTLPSLVKLR---LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVF 269
           N +  L  L+   LS   +    P ++ + ++L  LDL YN F+                
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN---------------- 479

Query: 270 LDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIP 306
                    G IPE L  LTSL+ L L+ N  +  +P
Sbjct: 480 ---------GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
            L +L +L  LDLS+ND     +P+ + ++ NL  L+LS  +    +PP++  LS L+ L
Sbjct: 158 PLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEEL 214

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           DLS N   +E L  L  L  L  L+LS   L    + +     L +L  L LS  Q+  +
Sbjct: 215 DLSNN-SIIELLSSLSNLKNLSGLELSNNKLEDLPESI---GNLSNLETLDLSNNQISSI 270

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
               + + + L  LDL  N   N+     +  L+  + L+L        +      L + 
Sbjct: 271 SS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328

Query: 292 KH 293
             
Sbjct: 329 IL 330

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 217 SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN 276
           +L  L LS  +L  +P  A      L  LDL  N    S  P    GL  L  LDL  NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNL-TSISPEAFSGLPSLRSLDLSGNN 59

Query: 277 F 277
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 19/60 (31%), Positives = 23/60 (38%)

Query: 266 QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
            L  LDL  N          + L +LK L L  N   S  P        L SL +S N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	938
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.58
PLN03150	623	hypothetical protein; Provisional	99.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.82
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
KOG4341	483	consensus F-box protein containing LRR [General fu	97.3
KOG4341	483	consensus F-box protein containing LRR [General fu	97.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.76
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.1
KOG4308	478	consensus LRR-containing protein [Function unknown	94.47
KOG4308	478	consensus LRR-containing protein [Function unknown	94.32
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.63
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.26
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.84
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.04
smart00370	26	LRR Leucine-rich repeats, outliers.	85.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.75
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.3
smart00370	26	LRR Leucine-rich repeats, outliers.	83.3

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.2e-71  Score=695.24  Aligned_cols=581  Identities=35%  Similarity=0.549  Sum_probs=391.1

Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccC
Q 036642           36 ESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLD  115 (938)
Q Consensus        36 ~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~  115 (938)
                      ++|++||++||+++.+|.+.+.+|+..++||.|.||+|+. .++|+.++|++               +.+.|.+++.+..
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~---------------~~i~~~~~~~~~~   91 (968)
T PLN00113         28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG---------------KNISGKISSAIFR   91 (968)
T ss_pred             HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC---------------CCccccCChHHhC
Confidence            5899999999999988888889997668999999999985 57999999988               3677888888899


Q ss_pred             CCCCCEEeCCCCCCCCCccccccc-CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642          116 LKHLSYLDLSYNDFQGVQIPRFIC-SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD  194 (938)
Q Consensus       116 l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  194 (938)
                      +++|++|+|++|.+++. +|..+. .+++|++|+|++|++++.+|.  +.+++|++|++++|.+                
T Consensus        92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~----------------  152 (968)
T PLN00113         92 LPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML----------------  152 (968)
T ss_pred             CCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc----------------
Confidence            99999999999998873 776544 888899999999888877764  3455555555554433                


Q ss_pred             EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642          195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR  274 (938)
Q Consensus       195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  274 (938)
                                                        ++..+..++++++|++|++++|.+.+.. |..+.++++|++|++++
T Consensus       153 ----------------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~  197 (968)
T PLN00113        153 ----------------------------------SGEIPNDIGSFSSLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLAS  197 (968)
T ss_pred             ----------------------------------cccCChHHhcCCCCCEEECccCcccccC-ChhhhhCcCCCeeeccC
Confidence                                              3333334444445555555555444433 44555555555555555


Q ss_pred             CcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchh
Q 036642          275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEIS  354 (938)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  354 (938)
                      |.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+..|..++++++|+.|++++|.+.+.+ 
T Consensus       198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-  276 (968)
T PLN00113        198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI-  276 (968)
T ss_pred             CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC-
Confidence            5555555555555555555555555555555555555555555555555555555544444444444444333333222 


Q ss_pred             hHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCC
Q 036642          355 EIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI  434 (938)
Q Consensus       355 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  434 (938)
                                                  |..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++      
T Consensus       277 ----------------------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~------  322 (968)
T PLN00113        277 ----------------------------PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG------  322 (968)
T ss_pred             ----------------------------chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC------
Confidence                                        2233444455555555555555555445555555555554444433      


Q ss_pred             CccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCcee
Q 036642          435 PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL  514 (938)
Q Consensus       435 ~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L  514 (938)
                                       ..|..+..+++|+.|++++|.+.+.+|..+                                 
T Consensus       323 -----------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---------------------------------  352 (968)
T PLN00113        323 -----------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNL---------------------------------  352 (968)
T ss_pred             -----------------cCChhHhcCCCCCEEECcCCCCcCcCChHH---------------------------------
Confidence                             223333333333333333333332222221                                 


Q ss_pred             ecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcc
Q 036642          515 SLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKF  594 (938)
Q Consensus       515 ~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  594 (938)
                                                              +.+++|+.|++++|++++.+|..+..+++|+.|++++|++
T Consensus       353 ----------------------------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  392 (968)
T PLN00113        353 ----------------------------------------GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL  392 (968)
T ss_pred             ----------------------------------------hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence                                                    2233444444444444444455555555555555555555


Q ss_pred             cccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCcc
Q 036642          595 TGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKG  673 (938)
Q Consensus       595 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~  673 (938)
                      .+.+|..++.+++|+.|++++|++++.+| .+.++++|+.|++++|++.+.+|.++. .+++|+.|++++|++.+.+|..
T Consensus       393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~  471 (968)
T PLN00113        393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDS  471 (968)
T ss_pred             cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCcc
Confidence            55555555555555555555555555555 555555666666666666665555554 4666666677767666666655


Q ss_pred             ccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccc
Q 036642          674 LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNL  753 (938)
Q Consensus       674 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (938)
                      + ..++|+.|++++|++++.+|..+.++++|                                                 
T Consensus       472 ~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------------------------------------------------  501 (968)
T PLN00113        472 F-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-------------------------------------------------  501 (968)
T ss_pred             c-ccccceEEECcCCccCCccChhhhhhhcc-------------------------------------------------
Confidence            4 34788999999999998888887776655                                                 


Q ss_pred             eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642          754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN  833 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  833 (938)
                       +.|+|++|++.|.+|+.++++++|+.|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+.++++|+++++++
T Consensus       502 -~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  580 (968)
T PLN00113        502 -MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH  580 (968)
T ss_pred             -CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence             6889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCcCCCcCCCCcCCC-CCCCCC
Q 036642          834 NNLTGKIPSSTQLQSFDASSYAGN-DLCGAP  863 (938)
Q Consensus       834 N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~  863 (938)
                      |+++|.+|..+++.++...+|.|| .+||.+
T Consensus       581 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        581 NHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999 899864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-56  Score=562.09  Aligned_cols=513  Identities=33%  Similarity=0.533  Sum_probs=379.5

Q ss_pred             CCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccc-cCCCCCCEEEccCCcccCCCCccccCCCCCCEE
Q 036642          216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV-FGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL  294 (938)
Q Consensus       216 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  294 (938)
                      .+++.|++++|.+++..+..+..+++|++|+|++|++.+.+ |..+ ..+++|++|++++|.+++.+|.  +.+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i-p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI-PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcC-ChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            35666666666666666666777777777777777776655 4433 3677777777777777666664  346677777


Q ss_pred             ECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEcc
Q 036642          295 LLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLR  374 (938)
Q Consensus       295 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~  374 (938)
                      ++++|.+++.+|..++++++|++|++++|.+.+..|..++++++|+.|++++|.+.+.+|.                   
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-------------------  206 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-------------------  206 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-------------------
Confidence            7777777767777777777777777777777766676666666666666666665554444                   


Q ss_pred             CCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCC
Q 036642          375 GSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFP  454 (938)
Q Consensus       375 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p  454 (938)
                                .++.+++|++|++++|++.+.+|..+..+++|++|++++|.+++                       .+|
T Consensus       207 ----------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------------~~p  253 (968)
T PLN00113        207 ----------ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-----------------------PIP  253 (968)
T ss_pred             ----------HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc-----------------------ccC
Confidence                      33344444444444444444444444444444444444444433                       233


Q ss_pred             cccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCc
Q 036642          455 SWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLI  533 (938)
Q Consensus       455 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~  533 (938)
                      ..+.++++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+.+..|       
T Consensus       254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-------  325 (968)
T PLN00113        254 SSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-------  325 (968)
T ss_pred             hhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-------
Confidence            334444444444444444444444433 234455555555555554444 33444445555555555444333       


Q ss_pred             EEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEc
Q 036642          534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL  613 (938)
Q Consensus       534 ~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  613 (938)
                                        ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus       326 ------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        326 ------------------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             ------------------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence                              23445788999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccccc
Q 036642          614 RKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG  692 (938)
Q Consensus       614 ~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  692 (938)
                      ++|++.+.+| .+..+++|+.|++++|++++.+|..+. .+++|+.|++++|++++.+|..+..+++|+.|++++|++.+
T Consensus       388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~  466 (968)
T PLN00113        388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG  466 (968)
T ss_pred             cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence            9999999888 899999999999999999999998887 79999999999999999999999999999999999999998


Q ss_pred             ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhc
Q 036642          693 EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEV  772 (938)
Q Consensus       693 ~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l  772 (938)
                      .+|..+.. .                                                  .|+.||+++|++++.+|..+
T Consensus       467 ~~p~~~~~-~--------------------------------------------------~L~~L~ls~n~l~~~~~~~~  495 (968)
T PLN00113        467 GLPDSFGS-K--------------------------------------------------RLENLDLSRNQFSGAVPRKL  495 (968)
T ss_pred             ecCccccc-c--------------------------------------------------cceEEECcCCccCCccChhh
Confidence            88865421 2                                                  24789999999999999999


Q ss_pred             cCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC-CcCCCcCC
Q 036642          773 TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS-TQLQSFDA  851 (938)
Q Consensus       773 ~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~  851 (938)
                      .++++|+.|+|++|++++.+|+.++++++|++|+|++|+++|.+|..+..+++|+.|++++|+++|.+|.. ..+..+..
T Consensus       496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999965 34455555


Q ss_pred             CCcCCCCCCC
Q 036642          852 SSYAGNDLCG  861 (938)
Q Consensus       852 ~~~~~n~lc~  861 (938)
                      ..+.+|.+.|
T Consensus       576 l~ls~N~l~~  585 (968)
T PLN00113        576 VNISHNHLHG  585 (968)
T ss_pred             EeccCCccee
Confidence            5667775543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-38  Score=321.57  Aligned_cols=481  Identities=23%  Similarity=0.282  Sum_probs=251.7

Q ss_pred             CCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEc
Q 036642          241 TLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGV  320 (938)
Q Consensus       241 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  320 (938)
                      .|+.+.+++|.+..  ....+.++..|.+|++.+|.+. ..|++++.+..++.++.++|++. .+|..++.+.+|.++++
T Consensus        46 ~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            34444444444432  1333444444555555555444 34444555555555555555544 34444555555555555


Q ss_pred             cCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCC
Q 036642          321 SNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNN  400 (938)
Q Consensus       321 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  400 (938)
                      ++|.+. ..++.++.+..++.++..+|++...++.++     .+. ++..+++.+|++....|..+. ++.|++||...|
T Consensus       122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~-----~~~-~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N  193 (565)
T KOG0472|consen  122 SSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMV-----NLS-KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN  193 (565)
T ss_pred             ccccee-ecCchHHHHhhhhhhhccccccccCchHHH-----HHH-HHHHhhccccchhhCCHHHHH-HHHHHhcccchh
Confidence            555444 233344444444444444444444333311     111 344444444444443333333 666666666666


Q ss_pred             eecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchh
Q 036642          401 SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNI  480 (938)
Q Consensus       401 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  480 (938)
                      -++ .+|..++.+.+|..|++..|++..+| +|..+..|+++.+..|.+.........+++++..||+..|+++ +.|+.
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde  270 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE  270 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence            655 55666666677777777777666654 4444444555555555544222222234455555555555554 44443


Q ss_pred             HhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCc
Q 036642          481 FWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKL  560 (938)
Q Consensus       481 ~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L  560 (938)
                      + ..+.+|.+||+|+|.+++.+++++++ .|+.|.+.+|.+...-...             +++  +  ....   ++.|
T Consensus       271 ~-clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~i-------------i~~--g--T~~v---LKyL  328 (565)
T KOG0472|consen  271 I-CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREI-------------ISK--G--TQEV---LKYL  328 (565)
T ss_pred             H-HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHH-------------Hcc--c--HHHH---HHHH
Confidence            3 12344455555555555444444444 4444444444432100000             000  0  0000   0001


Q ss_pred             ce----eeccCcc---C-CCc----cchhhhcCCCCCEEEcCCCcccccCCcccCCCCC---CcEEEccccccccccccc
Q 036642          561 QF----LYLRGNF---L-QGE----LTDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS---LQSLHLRKNNLSGTIHSL  625 (938)
Q Consensus       561 ~~----L~ls~n~---l-~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~~~l  625 (938)
                      +.    =.++.-+   - ++.    .........+.+.|++++-+++ .+|+.+..-..   ....++++|++...+..+
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L  407 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL  407 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence            00    0000000   0 000    1111233456777888887777 56655433333   677888888887655566


Q ss_pred             ccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhh
Q 036642          626 KNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMV  705 (938)
Q Consensus       626 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  705 (938)
                      ..+..+.+.-+..|+..+-+|..+. .+++|..|+|++|-+.. +|..++.+..|+.||++.|+|. .+|+++..+..++
T Consensus       408 ~~lkelvT~l~lsnn~isfv~~~l~-~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE  484 (565)
T KOG0472|consen  408 VELKELVTDLVLSNNKISFVPLELS-QLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLE  484 (565)
T ss_pred             HHHHHHHHHHHhhcCccccchHHHH-hhhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHH
Confidence            6666655443334444454555555 67888888888776654 7777777878888888888877 7777777666553


Q ss_pred             hccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcC
Q 036642          706 TLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSN  785 (938)
Q Consensus       706 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~  785 (938)
                      .+                                                  -.++|++....|..++++.+|..|||.+
T Consensus       485 tl--------------------------------------------------las~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  485 TL--------------------------------------------------LASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             HH--------------------------------------------------HhccccccccChHHhhhhhhcceeccCC
Confidence            22                                                  2345666644444477777777777777


Q ss_pred             ccCcccCCccccccCCCCEEECCCCccc
Q 036642          786 NFFTGRIPESIGAMRSLESIDFSLNQLS  813 (938)
Q Consensus       786 N~l~~~ip~~~~~l~~L~~LdLs~N~l~  813 (938)
                      |.+- .||+.+|++++|++|++++|++.
T Consensus       515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  515 NDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             Cchh-hCChhhccccceeEEEecCCccC
Confidence            7776 67777777777777777777776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-36  Score=314.62  Aligned_cols=371  Identities=22%  Similarity=0.207  Sum_probs=237.7

Q ss_pred             cEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECC
Q 036642          169 QYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLL  248 (938)
Q Consensus       169 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~  248 (938)
                      ++||+++|++..++...|.++++|+.+++..|.++.++.   ......+|+.|+|.+|.|+.+..+.++.++.|+.|||+
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~---f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR---FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc---ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            346666666666666666666666666666666666543   22334568888888888888888888888888888888


Q ss_pred             CCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCch
Q 036642          249 YNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGR  328 (938)
Q Consensus       249 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  328 (938)
                      .|.++... ...+..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.
T Consensus       158 rN~is~i~-~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLISEIP-KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhhccc-CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            88877533 34455556788888888888877777888888888888888888877777777888899999888888766


Q ss_pred             hhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccc
Q 036642          329 VIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPF  408 (938)
Q Consensus       329 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  408 (938)
                      ..-.|.++++|+.|.+..|++......+|    -.+. ++++|+++.|++...-..++-+++.|+.|++++|.|...-++
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~F----y~l~-kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAF----YGLE-KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcce----eeec-ccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence            56678888888888887777765433321    1111 344444444444444444444444444444444444444444


Q ss_pred             cccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCc
Q 036642          409 SLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQI  488 (938)
Q Consensus       409 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  488 (938)
                      .+..+++|++|+|++|+|+.+                       .+..|..+..|++|.|++|.+. .+.+..|..+++|
T Consensus       312 ~WsftqkL~~LdLs~N~i~~l-----------------------~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL  367 (873)
T KOG4194|consen  312 SWSFTQKLKELDLSSNRITRL-----------------------DEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSL  367 (873)
T ss_pred             hhhhcccceeEeccccccccC-----------------------ChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhh
Confidence            444444444444444444442                       2333444445555555555544 3333333334444


Q ss_pred             cEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCc
Q 036642          489 YVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN  568 (938)
Q Consensus       489 ~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n  568 (938)
                      +.|||++|.++..                       +.+                      ....+..+++|+.|++.+|
T Consensus       368 ~~LdLr~N~ls~~-----------------------IED----------------------aa~~f~gl~~LrkL~l~gN  402 (873)
T KOG4194|consen  368 HKLDLRSNELSWC-----------------------IED----------------------AAVAFNGLPSLRKLRLTGN  402 (873)
T ss_pred             hhhcCcCCeEEEE-----------------------Eec----------------------chhhhccchhhhheeecCc
Confidence            4444444443332                       221                      1123455788888888888


Q ss_pred             cCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccc
Q 036642          569 FLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL  618 (938)
Q Consensus       569 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  618 (938)
                      ++......+|.++++|++|||.+|.|..+.|.+|..+ .|+.|.+..-.+
T Consensus       403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            8887777788888999999999999888888888888 888887765443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.3e-38  Score=315.58  Aligned_cols=478  Identities=27%  Similarity=0.347  Sum_probs=298.4

Q ss_pred             CCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCee
Q 036642          263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV  342 (938)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  342 (938)
                      .-..++.+.+++|.++ .+.+.+.++..|.+|++++|+++ ..|..++.+..++.++.+.|+++ ..|+.++.+.+++.+
T Consensus        43 ~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL  119 (565)
T ss_pred             hhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence            4456788888888887 44555777888888888888887 56777888888888888888776 456666666666666


Q ss_pred             ecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEcc
Q 036642          343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS  422 (938)
Q Consensus       343 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  422 (938)
                      +.+.|.+....++                              ++.+..++.++..+|+++ ..|..+.++.+|..+++.
T Consensus       120 ~~s~n~~~el~~~------------------------------i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~  168 (565)
T KOG0472|consen  120 DCSSNELKELPDS------------------------------IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLE  168 (565)
T ss_pred             hccccceeecCch------------------------------HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcc
Confidence            6666665544333                              344455555555555555 344555555555555665


Q ss_pred             CccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccC
Q 036642          423 YNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI  502 (938)
Q Consensus       423 ~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  502 (938)
                      +|++...++.......|++++..+|-++ .+|..++.+.+|..|++..|++. .                         .
T Consensus       169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~-------------------------l  221 (565)
T KOG0472|consen  169 GNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F-------------------------L  221 (565)
T ss_pred             ccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c-------------------------C
Confidence            5555554444333333444443333333 23333444444444444444443 2                         2


Q ss_pred             CCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCC
Q 036642          503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ  582 (938)
Q Consensus       503 ~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~  582 (938)
                      |+|..+..|.+++++.|++.-                      +|   .+...+++++.+||+.+|+++ +.|+.+..+.
T Consensus       222 Pef~gcs~L~Elh~g~N~i~~----------------------lp---ae~~~~L~~l~vLDLRdNklk-e~Pde~clLr  275 (565)
T KOG0472|consen  222 PEFPGCSLLKELHVGENQIEM----------------------LP---AEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR  275 (565)
T ss_pred             CCCCccHHHHHHHhcccHHHh----------------------hH---HHHhcccccceeeeccccccc-cCchHHHHhh
Confidence            244444444444444443331                      11   123346788888888888888 6788888888


Q ss_pred             CCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccccccc------CcCCcE----EECCCCc----cCCCCChh
Q 036642          583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKN------CTALLT----LDVGENE----FVENIPTW  648 (938)
Q Consensus       583 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~------l~~L~~----L~Ls~N~----l~~~~p~~  648 (938)
                      +|+.||+|+|.++ .+|.+++++ +|+.|.+.||++...=..+-+      ++.|+.    =.++.-+    -.+..|.+
T Consensus       276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~  353 (565)
T KOG0472|consen  276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSE  353 (565)
T ss_pred             hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Confidence            9999999999998 678889998 899999999987531111100      001110    0011000    01111222


Q ss_pred             Hh---hhcCcccEEeeCCCcccccCCccccCCC---ccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhc
Q 036642          649 IG---ERFSRMVVLILRSNKFHSLLPKGLCDLA---FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLY  722 (938)
Q Consensus       649 ~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~  722 (938)
                      .+   ....+.+.|++++-+++. +|+....-.   -.+.++++.|++. ++|..+..++.+.+.-...+.         
T Consensus       354 ~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn---------  422 (565)
T KOG0472|consen  354 SFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN---------  422 (565)
T ss_pred             cccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC---------
Confidence            21   134567788888877776 444433222   2778889999887 788887777776543222111         


Q ss_pred             cCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCC
Q 036642          723 ASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSL  802 (938)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L  802 (938)
                                       ..+..+...+.++.+..|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|+.+..+..+
T Consensus       423 -----------------~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l  483 (565)
T KOG0472|consen  423 -----------------KISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL  483 (565)
T ss_pred             -----------------ccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH
Confidence                             12334455667778888999988887 78999999999999999999888 788877777777


Q ss_pred             CEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCCCC
Q 036642          803 ESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDL  859 (938)
Q Consensus       803 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l  859 (938)
                      |.+-.++|++...-|+.+.++..|.+||+.+|.+..-.|.-+.++++......||.+
T Consensus       484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             HHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            777777788877666768888888888888888874434446666665555555533

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-35  Score=311.93  Aligned_cols=298  Identities=25%  Similarity=0.198  Sum_probs=168.9

Q ss_pred             CccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccC
Q 036642          391 NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSY  470 (938)
Q Consensus       391 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~  470 (938)
                      .-+.||+++|++....+..|.++++|+++++.+|.++.+|........++.|+|.+|.+...-.+.+..++.|+.||||.
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            45578899998888888888899999999999998888776555555677777777777766666677777777777777


Q ss_pred             cccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCC---CCCCcEEEccCCcccccc
Q 036642          471 SGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSI  546 (938)
Q Consensus       471 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~  546 (938)
                      |.|+ .+|..-|..-.++++|+|++|.|+..-. .|..+.+|..|.|+.|+++...+..   +++|+.|++..|+|.-.-
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            7776 4554444445567777777777765444 4555555666666666655443332   234444444444443210


Q ss_pred             chhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-cc
Q 036642          547 FHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SL  625 (938)
Q Consensus       547 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l  625 (938)
                          ...|.++++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++.++++|+.|+|+.|.|...-+ +.
T Consensus       238 ----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  238 ----GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             ----hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence                1223444555555555555544444444455555555555555554444444455555555555555544333 44


Q ss_pred             ccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccccccc
Q 036642          626 KNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV  694 (938)
Q Consensus       626 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  694 (938)
                      ..+++|++|||++|+++.--+..+ ..+..|++|+|++|++...-...|..+++|++|||++|.+++.|
T Consensus       314 sftqkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  314 SFTQKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hhcccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            444455555555555443222222 23444555555555444444444444444555555555444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=327.92  Aligned_cols=407  Identities=25%  Similarity=0.297  Sum_probs=217.3

Q ss_pred             CcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECc
Q 036642          218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLD  297 (938)
Q Consensus       218 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  297 (938)
                      ++.|+++.|.+-..|-....+.-+|+.||+++|++..  .|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            6666666666666555555555568888888887765  3677777788888888888776 567777788888888888


Q ss_pred             CCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCc
Q 036642          298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSS  377 (938)
Q Consensus       298 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  377 (938)
                      +|.+. ..|..+..+.+|+.|+++.|++. .+|..+..+..+..+..++|......+.        .  .++.+++..|.
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--------~--~ik~~~l~~n~  167 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ--------T--SIKKLDLRLNV  167 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc--------c--cchhhhhhhhh
Confidence            87775 57888888888888888888775 5666777777777777777722221111        1  35666666666


Q ss_pred             CccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCccc
Q 036642          378 VSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWL  457 (938)
Q Consensus       378 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l  457 (938)
                      +.+.++..+..++.  .|||++|.+. .  ..+..+.+|+.+....|++..+.                           
T Consensus       168 l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~---------------------------  215 (1081)
T KOG0618|consen  168 LGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE---------------------------  215 (1081)
T ss_pred             cccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE---------------------------
Confidence            66666666655555  5777777766 1  24556666777776666665431                           


Q ss_pred             CCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEc
Q 036642          458 HSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDF  537 (938)
Q Consensus       458 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~l  537 (938)
                      ..-++|+.|+.++|.++...+..   ...+|+++++++|++++.+..+..+.+|+.++..+|++..              
T Consensus       216 ~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~--------------  278 (1081)
T KOG0618|consen  216 ISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA--------------  278 (1081)
T ss_pred             ecCcchheeeeccCcceeecccc---ccccceeeecchhhhhcchHHHHhcccceEecccchhHHh--------------
Confidence            11234555555555554222211   1233444444444444332222233333333333332211              


Q ss_pred             cCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCccc-CCCC-CCcEEEccc
Q 036642          538 SNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISL-GSLI-SLQSLHLRK  615 (938)
Q Consensus       538 s~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~-~L~~L~L~~  615 (938)
                                  .+..+...++|+.|.+..|.+. .+|+....+.+|++|+|..|++. ..|+.+ .-+. +|..|+.+.
T Consensus       279 ------------lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~  344 (1081)
T KOG0618|consen  279 ------------LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS  344 (1081)
T ss_pred             ------------hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence                        0111222344455555555544 33334444455555555555554 223221 1111 234444444


Q ss_pred             cccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccccccc
Q 036642          616 NNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV  694 (938)
Q Consensus       616 n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~  694 (938)
                      |++...+. .=...+.|+.|.+.+|.++...-+-+- ++++|++|+|++|++.......+.++..|+.|+||+|+++ .+
T Consensus       345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~L  422 (1081)
T KOG0618|consen  345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TL  422 (1081)
T ss_pred             ccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hh
Confidence            44433222 222333444444555544443322222 3444555555555444433334444444455555555444 44


Q ss_pred             chhhhcchhh
Q 036642          695 PRCIHNLRAM  704 (938)
Q Consensus       695 p~~l~~l~~L  704 (938)
                      |+++.++..|
T Consensus       423 p~tva~~~~L  432 (1081)
T KOG0618|consen  423 PDTVANLGRL  432 (1081)
T ss_pred             hHHHHhhhhh
Confidence            4444444444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.2e-34  Score=321.88  Aligned_cols=498  Identities=25%  Similarity=0.264  Sum_probs=320.8

Q ss_pred             ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642          107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL  186 (938)
Q Consensus       107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  186 (938)
                      ..||..+..-.++..|++++|-+-..+ -+++.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.|...+ ...
T Consensus        11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp-~s~   87 (1081)
T KOG0618|consen   11 ELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP-SSC   87 (1081)
T ss_pred             cccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-hhh
Confidence            456666666666888888888776432 234455556888888888877 67888888888888888888776543 334


Q ss_pred             CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642          187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ  266 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  266 (938)
                      .++.+|+++.|.+|.+...                           |..+..+++|+.|+++.|.+..  .|..+..+..
T Consensus        88 ~~~~~l~~lnL~~n~l~~l---------------------------P~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~  138 (1081)
T KOG0618|consen   88 SNMRNLQYLNLKNNRLQSL---------------------------PASISELKNLQYLDLSFNHFGP--IPLVIEVLTA  138 (1081)
T ss_pred             hhhhcchhheeccchhhcC---------------------------chhHHhhhcccccccchhccCC--CchhHHhhhH
Confidence            4455555555555544443                           2355555666666666666543  3555666666


Q ss_pred             CCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC
Q 036642          267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC  346 (938)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  346 (938)
                      +..+..++|.....    ++.. .++.+++..|.+.+.++..+..++.  .|+|.+|.+.   ...+..+++|+.+....
T Consensus       139 ~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~r  208 (1081)
T KOG0618|consen  139 EEELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCER  208 (1081)
T ss_pred             HHHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhh
Confidence            66666666622111    1111 1666666666666666666666555  6777777665   23455666667666666


Q ss_pred             CcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccC
Q 036642          347 VKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNEL  426 (938)
Q Consensus       347 n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  426 (938)
                      |++....         ..-++++.|+...|.++...+.  ....+|++++++.|++++ +|.++..+.+|+.++..+|.+
T Consensus       209 n~ls~l~---------~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  209 NQLSELE---------ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             cccceEE---------ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhH
Confidence            6665321         1122778888888887743332  234578899999999884 568999999999999999999


Q ss_pred             CCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcC-ccEEecccccccccCC-C
Q 036642          427 NGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQ-IYVLDLSFNQIHGQIP-N  504 (938)
Q Consensus       427 ~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~-~  504 (938)
                      +.++...+...+|+.|.+..|.+. .+|......++|++|+|..|++. .+|+.++..... +..|+.+.|++...+. +
T Consensus       277 ~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~  354 (1081)
T KOG0618|consen  277 VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE  354 (1081)
T ss_pred             HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence            888888888888999998888887 56666788999999999999998 677766655544 6677777766654332 1


Q ss_pred             ccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCC
Q 036642          505 LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL  584 (938)
Q Consensus       505 l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  584 (938)
                      -...                     +.|+.|.+.+|.+++..+.    .+.+.++|+.|+|++|++.......+.++..|
T Consensus       355 e~~~---------------------~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L  409 (1081)
T KOG0618|consen  355 ENNH---------------------AALQELYLANNHLTDSCFP----VLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL  409 (1081)
T ss_pred             chhh---------------------HHHHHHHHhcCcccccchh----hhccccceeeeeecccccccCCHHHHhchHHh
Confidence            1222                     3445555555555544332    23446677777777777765444556677777


Q ss_pred             CEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC
Q 036642          585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN  664 (938)
Q Consensus       585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n  664 (938)
                      ++|+||+|+++ .+|..+..++.|++|...+|++.. .|.+..++.|+.+|+|.|+++...-.... ..++|++|++++|
T Consensus       410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGN  486 (1081)
T ss_pred             HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-chhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCC
Confidence            77777777777 566777777777777777777764 33677777777777777776543222211 2267777777777


Q ss_pred             cccccCCccccCCCccCeeecccc
Q 036642          665 KFHSLLPKGLCDLAFLQIVDLADN  688 (938)
Q Consensus       665 ~l~~~~~~~l~~l~~L~~L~Ls~N  688 (938)
                      .-....-..|..+..+...++.-|
T Consensus       487 ~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  487 TRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cccccchhhhHHhhhhhheecccC
Confidence            543333344444555555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-32  Score=291.03  Aligned_cols=374  Identities=26%  Similarity=0.312  Sum_probs=218.4

Q ss_pred             cCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642          114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK  193 (938)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  193 (938)
                      +-++.+|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++..+            
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v------------   70 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV------------   70 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh------------
Confidence            345678889999999998789999999999999999999988 7899999999999999988876532            


Q ss_pred             EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCC-CcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642          194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL-PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL  272 (938)
Q Consensus       194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  272 (938)
                                     ...+..++.|+.+.+.+|++... .|..+..+..|++|||++|++..  .|..+..-+++-+|+|
T Consensus        71 ---------------hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   71 ---------------HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNL  133 (1255)
T ss_pred             ---------------hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEc
Confidence                           12333444555555555544211 22344455666666666666554  3555555556666666


Q ss_pred             cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccc
Q 036642          273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQE  352 (938)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  352 (938)
                      ++|+|..+....+.+++.|-.|+|++|++. .+|+-+..+..|++|+|++|.+...-...+..+++              
T Consensus       134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts--------------  198 (1255)
T KOG0444|consen  134 SYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS--------------  198 (1255)
T ss_pred             ccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh--------------
Confidence            666655322233445555555666655554 34444555555555555555544333332333333              


Q ss_pred             hhhHHHhhhcccccCccEEEccCCcCc-cccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCC
Q 036642          353 ISEIFDIFSGCVSSGLEILVLRGSSVS-GHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMND  431 (938)
Q Consensus       353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  431 (938)
                                     |+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. .+|..+.++++|+.|+||+|+|+.+..
T Consensus       199 ---------------L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  199 ---------------LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             ---------------hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec
Confidence                           333333332221 234556667777777777777776 567777777777777777777776533


Q ss_pred             CCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccC
Q 036642          432 NWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQL  511 (938)
Q Consensus       432 ~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L  511 (938)
                      .....                        .+|++|++|.|+++ .+|+.+. .++.|+.|.+.+|+++-           
T Consensus       263 ~~~~W------------------------~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~F-----------  305 (1255)
T KOG0444|consen  263 TEGEW------------------------ENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTF-----------  305 (1255)
T ss_pred             cHHHH------------------------hhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCcccc-----------
Confidence            22222                        34444444444444 3333331 23333333333333220           


Q ss_pred             ceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCC
Q 036642          512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN  591 (938)
Q Consensus       512 ~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~  591 (938)
                                                          .-++..++.+..|+++..++|.+. ..|+.++.|..|+.|.|+.
T Consensus       306 ------------------------------------eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~  348 (1255)
T KOG0444|consen  306 ------------------------------------EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH  348 (1255)
T ss_pred             ------------------------------------cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence                                                001123444555666666665555 5666666666666666666


Q ss_pred             CcccccCCcccCCCCCCcEEEccccccccccc
Q 036642          592 NKFTGNLPISLGSLISLQSLHLRKNNLSGTIH  623 (938)
Q Consensus       592 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  623 (938)
                      |++. .+|+.+.-++.|+.|+++.|.-.-.+|
T Consensus       349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            6666 566666666666666666665443443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.2e-31  Score=284.24  Aligned_cols=366  Identities=24%  Similarity=0.370  Sum_probs=219.0

Q ss_pred             CCCCCEEEccCCcccC-CCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCee
Q 036642          264 LIQLVFLDLRRNNFQG-PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV  342 (938)
Q Consensus       264 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  342 (938)
                      ++-.+-.|+++|.++| .+|.....+++++.|.|...++. .+|..++.+.+|++|.+++|++... ...          
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGE----------   73 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGE----------   73 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhh----------
Confidence            3444556666666663 45666666666666666655554 4555566666666666555554321 111          


Q ss_pred             ecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeec-ccccccccCCCCCcEEEc
Q 036642          343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV-GPIPFSLGHLSTLQFIDL  421 (938)
Q Consensus       343 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L  421 (938)
                                                                 +..++.|+.+++..|++. .-+|..+-.+..|+.|||
T Consensus        74 -------------------------------------------Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL  110 (1255)
T KOG0444|consen   74 -------------------------------------------LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL  110 (1255)
T ss_pred             -------------------------------------------hccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence                                                       334445555555555443 234555556666666666


Q ss_pred             cCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEeccccccccc
Q 036642          422 SYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQ  501 (938)
Q Consensus       422 s~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  501 (938)
                      |+|++.++|                        ..+..-+++-.|+||+|+|. .||...+.+++.|-+||||+|++...
T Consensus       111 ShNqL~EvP------------------------~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~L  165 (1255)
T KOG0444|consen  111 SHNQLREVP------------------------TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEML  165 (1255)
T ss_pred             chhhhhhcc------------------------hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhc
Confidence            666666543                        33334445555555555555 56666666677777777777777766


Q ss_pred             CCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCC-Cccchhhhc
Q 036642          502 IPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ-GELTDCWMN  580 (938)
Q Consensus       502 ~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~-~~~~~~~~~  580 (938)
                      +|.+..+..|++|++++|.+.-.                         -...+..+++|++|.+++.+-+ ..+|.++..
T Consensus       166 PPQ~RRL~~LqtL~Ls~NPL~hf-------------------------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~  220 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNPLNHF-------------------------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD  220 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCChhhHH-------------------------HHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence            66666666666666666654311                         0112233567777888876544 357888888


Q ss_pred             CCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEe
Q 036642          581 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI  660 (938)
Q Consensus       581 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  660 (938)
                      +.+|..+|+|.|.+. .+|+.+-.+++|+.|+|++|+++..--......+|++|++|.|+++. +|              
T Consensus       221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP--------------  284 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LP--------------  284 (1255)
T ss_pred             hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-ch--------------
Confidence            889999999999888 88888888889999999888887543344444455555555555432 44              


Q ss_pred             eCCCcccccCCccccCCCccCeeeccccccc-cccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeee
Q 036642          661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLS-GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV  739 (938)
Q Consensus       661 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (938)
                                 +.++.++.|+.|.+.+|+++ .-||..++.+.+|+.                                 
T Consensus       285 -----------~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev---------------------------------  320 (1255)
T KOG0444|consen  285 -----------DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV---------------------------------  320 (1255)
T ss_pred             -----------HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH---------------------------------
Confidence                       44444555555555555443 134555555555422                                 


Q ss_pred             ecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccc
Q 036642          740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS  813 (938)
Q Consensus       740 ~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~  813 (938)
                                       +..++|++. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+--
T Consensus       321 -----------------f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  321 -----------------FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             -----------------HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence                             223445544 56666666666666666666666 56666666666777777666544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=6e-25  Score=222.84  Aligned_cols=433  Identities=22%  Similarity=0.241  Sum_probs=265.3

Q ss_pred             CCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC-CcCccchhhHHH
Q 036642          280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC-VKLSQEISEIFD  358 (938)
Q Consensus       280 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~  358 (938)
                      .+|..+.  +.-.+++|..|.|+...|..|+.+++|+.|||++|.|+.+.|.+|.+++++..|.+.+ |+++......| 
T Consensus        60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-  136 (498)
T KOG4237|consen   60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-  136 (498)
T ss_pred             cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-
Confidence            4454332  3567788888888887778888888888888888888888888888888888777776 67766555533 


Q ss_pred             hhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccc
Q 036642          359 IFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ  438 (938)
Q Consensus       359 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  438 (938)
                         +.+. .++.|.+.-|++.-.....|..++++..|.+.+|.+...--..|..+..++.+.+..|.+...-    ..+.
T Consensus       137 ---~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC----nL~w  208 (498)
T KOG4237|consen  137 ---GGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC----NLPW  208 (498)
T ss_pred             ---hhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc----ccch
Confidence               3333 6777777777777777777888888888888888887544447888888888888888754320    0000


Q ss_pred             cceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCC
Q 036642          439 LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGS  518 (938)
Q Consensus       439 L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~  518 (938)
                      +.. +      ....|..+++.+...-..+.+.++...-+..|...                          ++.+    
T Consensus       209 la~-~------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--------------------------~esl----  251 (498)
T KOG4237|consen  209 LAD-D------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--------------------------LESL----  251 (498)
T ss_pred             hhh-H------HhhchhhcccceecchHHHHHHHhcccchhhhhhh--------------------------HHhH----
Confidence            000 0      00112222222222222222333221111111100                          0000    


Q ss_pred             ccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccC
Q 036642          519 NSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNL  598 (938)
Q Consensus       519 n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  598 (938)
                                    ..=-.+.+...+..|.   .-|+.+++|+.|++++|++++.-+.+|.+...+++|.|..|++...-
T Consensus       252 --------------~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~  314 (498)
T KOG4237|consen  252 --------------PSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS  314 (498)
T ss_pred             --------------HHhhccccCcCCcChH---HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH
Confidence                          0000011111122221   23567888999999999999888888999999999999999988777


Q ss_pred             CcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCC-ChhHhhhcCcccEEeeCCCcccccCCccccC
Q 036642          599 PISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENI-PTWIGERFSRMVVLILRSNKFHSLLPKGLCD  676 (938)
Q Consensus       599 p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  676 (938)
                      ...|.++..|+.|+|.+|+|+...| +|..+.+|.+|.+-.|++.-.- -.|+++.+        +.++-.|..| . +.
T Consensus       315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl--------r~~~~~~~~~-C-q~  384 (498)
T KOG4237|consen  315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL--------RKKSVVGNPR-C-QS  384 (498)
T ss_pred             HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH--------hhCCCCCCCC-C-CC
Confidence            7788889999999999999988878 8888889999999888875431 23444322        2222222111 1 11


Q ss_pred             CCccCeeecccccccc---ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccc
Q 036642          677 LAFLQIVDLADNNLSG---EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNL  753 (938)
Q Consensus       677 l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (938)
                      -..++.+++++..+..   .-|++.+...+                    +..|                 ++..+.-  
T Consensus       385 p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s--------------------~~cP-----------------~~c~c~~--  425 (498)
T KOG4237|consen  385 PGFVRQIPISDVAFGDFRCGGPEELGCLTS--------------------SPCP-----------------PPCTCLD--  425 (498)
T ss_pred             CchhccccchhccccccccCCccccCCCCC--------------------CCCC-----------------CCcchhh--
Confidence            2235555565554431   11221111000                    0000                 0001111  


Q ss_pred             eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642          754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN  833 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  833 (938)
                       +...-|++.+. .+|..+.  ..-.+|++.+|.++ .+|+.  .+.+| .+|+|+|+++..--..|.++++|.+|-+||
T Consensus       426 -tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy  497 (498)
T KOG4237|consen  426 -TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY  497 (498)
T ss_pred             -hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence             12223444444 5555443  34567889999998 78877  67788 889999999887778889999999999988


Q ss_pred             C
Q 036642          834 N  834 (938)
Q Consensus       834 N  834 (938)
                      |
T Consensus       498 n  498 (498)
T KOG4237|consen  498 N  498 (498)
T ss_pred             C
Confidence            7

>PLN03210 Resistant to P

Probab=99.88  E-value=1e-21  Score=246.88  Aligned_cols=337  Identities=21%  Similarity=0.265  Sum_probs=205.4

Q ss_pred             cccCCCCCccEEEccCCe------ecccccccccCCC-CCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcc
Q 036642          384 YKLGQFKNLYYLDLSNNS------IVGPIPFSLGHLS-TLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSW  456 (938)
Q Consensus       384 ~~l~~l~~L~~L~Ls~n~------l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~  456 (938)
                      ..|..+++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+..+|..+ .+.+|+.|++.+|.+. .++..
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            346677778877776543      2234555555553 5777777777777776554 3466777777776665 34455


Q ss_pred             cCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCcEE
Q 036642          457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIEL  535 (938)
Q Consensus       457 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L  535 (938)
                      +..+++|+.|+++++...+.+|.  +..+++|+.|++++|.....+| .+..+++|+.|++++|...+.+|..       
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-------  700 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-------  700 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-------
Confidence            56666667777666654445554  2445666666666655444444 4555555555555555433333321       


Q ss_pred             EccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccc
Q 036642          536 DFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK  615 (938)
Q Consensus       536 ~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  615 (938)
                                         .++++|+.|++++|...+.+|..   .++|++|++++|.+. .+|..+ .+++|+.|++.+
T Consensus       701 -------------------i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~  756 (1153)
T PLN03210        701 -------------------INLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE  756 (1153)
T ss_pred             -------------------CCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence                               12455666666665544444432   345666666666665 455444 456666666655


Q ss_pred             ccccc-------ccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccc
Q 036642          616 NNLSG-------TIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLAD  687 (938)
Q Consensus       616 n~l~~-------~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  687 (938)
                      +....       ..+ ....+++|+.|++++|...+.+|.++. ++++|+.|++++|...+.+|..+ .+++|+.|++++
T Consensus       757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~  834 (1153)
T PLN03210        757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG  834 (1153)
T ss_pred             cchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCC
Confidence            43211       111 222345677777777766666776665 57777777777765555566554 566777777777


Q ss_pred             cccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc
Q 036642          688 NNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK  767 (938)
Q Consensus       688 N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~  767 (938)
                      |.....+|..                                                     ..+++.|+|++|.++ .
T Consensus       835 c~~L~~~p~~-----------------------------------------------------~~nL~~L~Ls~n~i~-~  860 (1153)
T PLN03210        835 CSRLRTFPDI-----------------------------------------------------STNISDLNLSRTGIE-E  860 (1153)
T ss_pred             CCcccccccc-----------------------------------------------------ccccCEeECCCCCCc-c
Confidence            6544333321                                                     123467888888887 6


Q ss_pred             CchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCc
Q 036642          768 IPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQ  811 (938)
Q Consensus       768 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~  811 (938)
                      +|..++.+++|+.|+|++|.--..+|..+..+++|+.|++++|.
T Consensus       861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            88888888888888888854444678888888888888888885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=3e-21  Score=242.67  Aligned_cols=341  Identities=21%  Similarity=0.233  Sum_probs=162.7

Q ss_pred             hHhhhccCCCCeeecCCCcCc------cchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeec
Q 036642          330 IRSMASLCNLRSVMLSCVKLS------QEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV  403 (938)
Q Consensus       330 ~~~l~~l~~L~~L~L~~n~l~------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  403 (938)
                      +..|.++++|+.|.+..+...      ..+|.    .+..++.+|+.|.+.++.+.. +|..+ .+.+|+.|++.+|++.
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~----~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE----GFDYLPPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE  624 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCc----chhhcCcccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc
Confidence            456777778887777654321      22233    223344466777776666543 34334 3566777777777665


Q ss_pred             ccccccccCCCCCcEEEccCcc-CCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHh
Q 036642          404 GPIPFSLGHLSTLQFIDLSYNE-LNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFW  482 (938)
Q Consensus       404 ~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  482 (938)
                       .++..+..+++|+.|+|+++. +..+| .+....+|++|++++|.....+|..+..+++|+.|++++|...+.+|... 
T Consensus       625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        625 -KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             -ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence             355556666777777776654 33332 34445566666666665555556666666666666666654444455432 


Q ss_pred             hcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCC--CCCCcEEEccCCccc---cccchhhhhhhccC
Q 036642          483 SSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLI--SSNLIELDFSNNSIS---GSIFHFICYRAHEL  557 (938)
Q Consensus       483 ~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~--~~~L~~L~ls~n~l~---~~~~~~~~~~l~~l  557 (938)
                       .+++|+.|++++|.....+|.+  ..+|+.|++++|.+.. +|..  +++|++|.+.++...   +.............
T Consensus       702 -~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        702 -NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             -CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhcc
Confidence             3455555555555433333322  2345555555555432 2221  334444444432210   00000000001112


Q ss_pred             CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642          558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG  637 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls  637 (938)
                      ++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.+  .++|+.|+++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls  854 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLS  854 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECC
Confidence            344455555544444444444455555555555443333444433 3444555555544333322211  1344444454


Q ss_pred             CCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccc
Q 036642          638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN  688 (938)
Q Consensus       638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  688 (938)
                      +|.+. .+|.++. .+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus       855 ~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        855 RTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            44443 2444443 3444444444443333334444444444444444444

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=2.2e-24  Score=218.74  Aligned_cols=287  Identities=22%  Similarity=0.178  Sum_probs=188.3

Q ss_pred             cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCC-CcccccCcccc
Q 036642          108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW-NFLYVENLWWL  186 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~-n~i~~~~~~~~  186 (938)
                      ++|..+..  .-+.++|..|+|+.+ -|..|+.+++||.||||+|+|+.+-|.+|.++.+|.+|.+.+ |+|+......|
T Consensus        60 eVP~~LP~--~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   60 EVPANLPP--ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             cCcccCCC--cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            44444432  456788999999954 455788999999999999999989999999999888877766 88998888899


Q ss_pred             CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccC---------
Q 036642          187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFV---------  257 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---------  257 (938)
                      .++..|+.|.+.-|++.-+..  ..+..+++|..|.+.+|.+..+....|..+..++.+.+..|.+-...-         
T Consensus       137 ~gL~slqrLllNan~i~Cir~--~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHINCIRQ--DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             hhHHHHHHHhcChhhhcchhH--HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence            999999999888888877644  678888899999999999888888888888889988888887432110         


Q ss_pred             --cccccCCCCCCEEEccCCcccCCCCccccC-CCCCCEEECcCCcCCCccc-hhhhcCCCCCEEEccCCcCCchhhHhh
Q 036642          258 --PNWVFGLIQLVFLDLRRNNFQGPIPEGLQN-LTSLKHLLLDSNRFNSSIP-NWLYRFNRLESLGVSNNSLQGRVIRSM  333 (938)
Q Consensus       258 --~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l  333 (938)
                        +..++...-..-..+.+.++....+..+.. +..+.+-..+.+...+..| ..|..+++|++|+|++|++++..+.+|
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence              111112222222222222222111111110 0111111111111212222 234555555555555555555555555


Q ss_pred             hccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCC
Q 036642          334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL  413 (938)
Q Consensus       334 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  413 (938)
                      .+...+++|.|..|++                             ..+-...|.++..|+.|+|++|+|+...|.+|..+
T Consensus       295 e~~a~l~eL~L~~N~l-----------------------------~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKL-----------------------------EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             cchhhhhhhhcCcchH-----------------------------HHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence            5555555555555544                             43334457778888899999999998888889999


Q ss_pred             CCCcEEEccCccCCC
Q 036642          414 STLQFIDLSYNELNG  428 (938)
Q Consensus       414 ~~L~~L~Ls~n~l~~  428 (938)
                      ..|.+|+|-.|.+.-
T Consensus       346 ~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFNC  360 (498)
T ss_pred             ceeeeeehccCcccC
Confidence            999999988887653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.6e-21  Score=224.66  Aligned_cols=79  Identities=25%  Similarity=0.353  Sum_probs=50.0

Q ss_pred             eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642          755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN  834 (938)
Q Consensus       755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  834 (938)
                      +.|++++|+++ .+|...   ++|+.|++++|+++ .+|...   .+|+.|++++|+|+ .+|..+.+++.|+.|++++|
T Consensus       385 ~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        385 KELIVSGNRLT-SLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             ceEEecCCccc-CCCCcc---cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence            45666667666 355432   45666777777776 355432   34566777777776 56777777777777777777


Q ss_pred             cccccCCC
Q 036642          835 NLTGKIPS  842 (938)
Q Consensus       835 ~l~g~ip~  842 (938)
                      +|+|.+|.
T Consensus       456 ~Ls~~~~~  463 (788)
T PRK15387        456 PLSERTLQ  463 (788)
T ss_pred             CCCchHHH
Confidence            77766553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.5e-21  Score=224.80  Aligned_cols=266  Identities=26%  Similarity=0.362  Sum_probs=179.2

Q ss_pred             cEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccc
Q 036642          464 NYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSIS  543 (938)
Q Consensus       464 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~  543 (938)
                      ..|+++++.++ .+|..+.   ++|+.|++++|+++.. |..  .++|++|++++|+++. +|..+++|+.|++++|.++
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~  275 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLT  275 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CCC--CCCCcEEEecCCccCc-ccCcccccceeeccCCchh
Confidence            34555555555 4444332   2455555555555542 221  3456666666666663 3444567777777777665


Q ss_pred             cccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc
Q 036642          544 GSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH  623 (938)
Q Consensus       544 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  623 (938)
                      . +|.       ..++|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.+++. |
T Consensus       276 ~-Lp~-------lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L-P  338 (788)
T PRK15387        276 H-LPA-------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL-P  338 (788)
T ss_pred             h-hhh-------chhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccccc-c
Confidence            3 221       12567778888888774 4432   4678888888888884 4432   24577788888888753 3


Q ss_pred             ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchh
Q 036642          624 SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRA  703 (938)
Q Consensus       624 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  703 (938)
                      .+  ..+|+.|++++|++.+ +|.    ..++|+.|++++|++++ +|..   .++|+.|++++|++++ +|...   + 
T Consensus       339 ~l--p~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s-  402 (788)
T PRK15387        339 TL--PSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---S-  402 (788)
T ss_pred             cc--ccccceEecCCCccCC-CCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---c-
Confidence            22  2478888888888875 554    23577888888888875 5543   3568899999998873 55321   1 


Q ss_pred             hhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeC
Q 036642          704 MVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNL  783 (938)
Q Consensus       704 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L  783 (938)
                                                                       .|+.|++++|+++ .+|...   ..|+.|++
T Consensus       403 -------------------------------------------------~L~~LdLS~N~Ls-sIP~l~---~~L~~L~L  429 (788)
T PRK15387        403 -------------------------------------------------ELKELMVSGNRLT-SLPMLP---SGLLSLSV  429 (788)
T ss_pred             -------------------------------------------------CCCEEEccCCcCC-CCCcch---hhhhhhhh
Confidence                                                             1367899999998 477643   46788999


Q ss_pred             cCccCcccCCccccccCCCCEEECCCCcccccCCccccCCC
Q 036642          784 SNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT  824 (938)
Q Consensus       784 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  824 (938)
                      ++|+|+ .+|+.++++++|+.|+|++|++++.+|..+..++
T Consensus       430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             ccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            999998 7899999999999999999999999888875543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=4.8e-19  Score=207.54  Aligned_cols=55  Identities=29%  Similarity=0.405  Sum_probs=28.4

Q ss_pred             eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccc----ccCCCCEEECCCCccc
Q 036642          755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIG----AMRSLESIDFSLNQLS  813 (938)
Q Consensus       755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~----~l~~L~~LdLs~N~l~  813 (938)
                      +.|++++|+++ .+|..+.  ..|+.|++++|+++ .+|+.+.    .++.+..|++.+|+++
T Consensus       370 ~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        370 TTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            45555555555 3454443  24555556666555 3443332    2355566666666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=6.8e-19  Score=206.27  Aligned_cols=245  Identities=24%  Similarity=0.355  Sum_probs=160.7

Q ss_pred             ceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCC
Q 036642          512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN  591 (938)
Q Consensus       512 ~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~  591 (938)
                      ..|+++++.++......+++++.|++++|+++. +|...      .++|++|++++|+++ .+|..+.  .+|+.|++++
T Consensus       181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        181 TELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             eEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            344444444443222223455555555555553 22111      245667777777666 3454443  3577777777


Q ss_pred             CcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCC
Q 036642          592 NKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLP  671 (938)
Q Consensus       592 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  671 (938)
                      |.+. .+|..+.  ++|+.|++++|+++..+..+.  ++|+.|++++|++.+ +|..+.   ++|+.|++++|+++. +|
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp---~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP---SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch---hhHHHHHhcCCcccc-CC
Confidence            7776 5565543  467777777777764322332  467777777777764 554432   467778888888875 44


Q ss_pred             ccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhc
Q 036642          672 KGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCIL  751 (938)
Q Consensus       672 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (938)
                      ..+  .++|+.|++++|.+++ +|..+.                                                    
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~----------------------------------------------------  345 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP----------------------------------------------------  345 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc----------------------------------------------------
Confidence            433  2678888888888874 554331                                                    


Q ss_pred             cceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcccc----CCCCCC
Q 036642          752 NLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS----SLTYLN  827 (938)
Q Consensus       752 ~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~----~l~~L~  827 (938)
                      +.|+.|++++|+++ .+|..+.  +.|+.|+|++|.++ .+|+.+.  .+|+.||+++|+++ .+|..+.    .++.+.
T Consensus       346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~  418 (754)
T PRK15370        346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT  418 (754)
T ss_pred             CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence            12478999999998 6887664  68999999999999 6787765  37999999999998 5666544    457889


Q ss_pred             eEeCcCCcccc
Q 036642          828 HLNLSNNNLTG  838 (938)
Q Consensus       828 ~L~ls~N~l~g  838 (938)
                      .+++.+|+++.
T Consensus       419 ~L~L~~Npls~  429 (754)
T PRK15370        419 RIIVEYNPFSE  429 (754)
T ss_pred             EEEeeCCCccH
Confidence            99999999974

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.4e-18  Score=190.47  Aligned_cols=160  Identities=26%  Similarity=0.234  Sum_probs=78.9

Q ss_pred             CcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC------ccchhhhcCCCCCEEEcCCCcccccCCcccCCC
Q 036642          532 LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG------ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSL  605 (938)
Q Consensus       532 L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  605 (938)
                      |++++++++.+++.....++..+...+.+++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            44455555544433333334444455556666666665541      223344555666666666666654444444433


Q ss_pred             CC---CcEEEcccccccc----ccc-ccccC-cCCcEEECCCCccCCCCChhHh---hhcCcccEEeeCCCccccc----
Q 036642          606 IS---LQSLHLRKNNLSG----TIH-SLKNC-TALLTLDVGENEFVENIPTWIG---ERFSRMVVLILRSNKFHSL----  669 (938)
Q Consensus       606 ~~---L~~L~L~~n~l~~----~~~-~l~~l-~~L~~L~Ls~N~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~----  669 (938)
                      .+   |++|++++|++++    .+. .+..+ ++|++|++++|.+++..+..+.   ..+++|++|++++|.+++.    
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  184 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA  184 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence            33   6666666666552    111 33444 5566666666665532221111   1334555666665555532    


Q ss_pred             CCccccCCCccCeeeccccccc
Q 036642          670 LPKGLCDLAFLQIVDLADNNLS  691 (938)
Q Consensus       670 ~~~~l~~l~~L~~L~Ls~N~l~  691 (938)
                      ++..+..+++|+.|++++|.++
T Consensus       185 l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         185 LAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHhCCCCCEEeccCCccC
Confidence            2223334455666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=8.1e-18  Score=184.33  Aligned_cols=107  Identities=24%  Similarity=0.228  Sum_probs=50.4

Q ss_pred             EECCCCCCCCccCcccccCCCCCCEEEccCCcccC----CCCccccCCCCCCEEECcCCcCCC------ccchhhhcCCC
Q 036642          245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG----PIPEGLQNLTSLKHLLLDSNRFNS------SIPNWLYRFNR  314 (938)
Q Consensus       245 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~  314 (938)
                      |+|..+.+++......+..+.+|++|+++++.++.    .++..+...+++++++++++.+.+      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            33444444332223333444445555555554432    123333444455555555554431      22334455556


Q ss_pred             CCEEEccCCcCCchhhHhhhccCC---CCeeecCCCcCcc
Q 036642          315 LESLGVSNNSLQGRVIRSMASLCN---LRSVMLSCVKLSQ  351 (938)
Q Consensus       315 L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~  351 (938)
                      |+.|++++|.+.+..+..+..+.+   |++|++++|++.+
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~  122 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD  122 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence            666666666655444444444443   6666666555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=9.4e-18  Score=151.23  Aligned_cols=167  Identities=30%  Similarity=0.466  Sum_probs=124.9

Q ss_pred             CccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCC
Q 036642          112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF  191 (938)
Q Consensus       112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~  191 (938)
                      .+.++.+++.|-||+|+++  .+|..+..+.+|+.|++++|++. .+|.+++.+++|++|+++-|++..           
T Consensus        28 gLf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-----------   93 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-----------   93 (264)
T ss_pred             cccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-----------
Confidence            3567778888999999998  47888889999999999999988 788888888888888887665431           


Q ss_pred             CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642          192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD  271 (938)
Q Consensus       192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  271 (938)
                                                              .|..|+.++.|++|||++|++....+|..|+.+..|+.|.
T Consensus        94 ----------------------------------------lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   94 ----------------------------------------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             ----------------------------------------CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence                                                    2345666666666666666666555677777777777778


Q ss_pred             ccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhc
Q 036642          272 LRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMAS  335 (938)
Q Consensus       272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  335 (938)
                      |++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+++|++|.+.+|+++.. |..+++
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vl-ppel~~  194 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVL-PPELAN  194 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeec-Chhhhh
Confidence            8888777 67777888888888888888776 5777788888888888888877643 333443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.8e-17  Score=149.38  Aligned_cols=181  Identities=24%  Similarity=0.471  Sum_probs=126.7

Q ss_pred             CCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeee
Q 036642          605 LISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD  684 (938)
Q Consensus       605 l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  684 (938)
                      +.+++.|.|++|+++..+|.+..+.+|+.|++++|++.. +|..+. .+++|+.|++.-|++. ..|..|+.++.|+.||
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhh-hchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            344445555555555444455555555555555555432 555554 5666666666666664 3678888888888888


Q ss_pred             cccccccc-ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCc
Q 036642          685 LADNNLSG-EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNN  763 (938)
Q Consensus       685 Ls~N~l~~-~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~  763 (938)
                      +++|++.. .+|..|..++.|                                                  +.|+|+.|.
T Consensus       109 ltynnl~e~~lpgnff~m~tl--------------------------------------------------ralyl~dnd  138 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTL--------------------------------------------------RALYLGDND  138 (264)
T ss_pred             ccccccccccCCcchhHHHHH--------------------------------------------------HHHHhcCCC
Confidence            88888863 556666555554                                                  455678888


Q ss_pred             cCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCC---CeEeCcCCcccccC
Q 036642          764 FSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYL---NHLNLSNNNLTGKI  840 (938)
Q Consensus       764 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L---~~L~ls~N~l~g~i  840 (938)
                      +. .+|.+++++++|+.|.+..|.+- ..|..++.++.|++|.+.+|+++ .+|..++++.-.   +++.+.+|++.-+|
T Consensus       139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            87 78999999999999999999998 78999999999999999999998 788888776532   34556677776544


Q ss_pred             C
Q 036642          841 P  841 (938)
Q Consensus       841 p  841 (938)
                      .
T Consensus       216 a  216 (264)
T KOG0617|consen  216 A  216 (264)
T ss_pred             H
Confidence            4

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=5.3e-15  Score=173.62  Aligned_cols=116  Identities=38%  Similarity=0.690  Sum_probs=103.8

Q ss_pred             eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642          754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN  833 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  833 (938)
                      ++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|+.++.+++|+.|||++|+++|.+|..++++++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCC--CcCCCcCCCCcCCC-CCCCCCCCCCCC
Q 036642          834 NNLTGKIPSS--TQLQSFDASSYAGN-DLCGAPLPRNCS  869 (938)
Q Consensus       834 N~l~g~ip~~--~~~~~~~~~~~~~n-~lc~~~~~~~c~  869 (938)
                      |+++|.+|..  ..+.......+.+| .+||.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999964  11223334568899 899987656674

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=7.6e-14  Score=163.90  Aligned_cols=149  Identities=32%  Similarity=0.456  Sum_probs=120.0

Q ss_pred             CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceeeCC--CC--CcEEEEecCCCCCccCCccCCCCCCcc
Q 036642           33 GCLESERRALLRFKQDLQDPSNRLASWIGYEDCC----AWAGVVCDN--VT--GHIVELNLRNPFTYCDLSQSKANPRSM  104 (938)
Q Consensus        33 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~--~~--~~v~~l~L~~~~~~~~~~~~~~~~~~~  104 (938)
                      .+.++|.+||+++|+++.++..  .+|.+ ++||    .|.||.|..  ..  .+|+.|+|++               +.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~---------------n~  429 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN---------------QG  429 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCC---------------CC
Confidence            3567899999999999976532  48976 5554    799999952  22  2589999988               47


Q ss_pred             cCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcc
Q 036642          105 LVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLW  184 (938)
Q Consensus       105 ~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~  184 (938)
                      +.|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|+|++|.+....+.
T Consensus       430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        430 LRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             ccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence            8899999999999999999999999985 999999999999999999999999999999999999999999988765555


Q ss_pred             ccCCC-CCCCEEeCCCC
Q 036642          185 WLPGL-SFLKDLDLSYV  200 (938)
Q Consensus       185 ~~~~l-~~L~~L~Ls~n  200 (938)
                      .+... .++..+++.+|
T Consensus       509 ~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        509 ALGGRLLHRASFNFTDN  525 (623)
T ss_pred             HHhhccccCceEEecCC
Confidence            44432 23344444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=9.2e-13  Score=141.02  Aligned_cols=193  Identities=27%  Similarity=0.363  Sum_probs=113.9

Q ss_pred             CcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCC
Q 036642          559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGE  638 (938)
Q Consensus       559 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~  638 (938)
                      .-...|++.|++. ++|..+..+..|+.+.+..|.+. .+|..++++..|+.|+|+.|+++-.+..+..|+ |+.|-+++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            3444566666665 45555666666666666666666 566666666666666666666654433444443 55555555


Q ss_pred             CccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhh
Q 036642          639 NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQ  718 (938)
Q Consensus       639 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~  718 (938)
                      |+++ .+|..++ ..+.|..|+.+.|.+.. +|..++.+.+|+.|.+..|++. .+|+.+..|+                
T Consensus       153 Nkl~-~lp~~ig-~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp----------------  212 (722)
T KOG0532|consen  153 NKLT-SLPEEIG-LLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP----------------  212 (722)
T ss_pred             Cccc-cCCcccc-cchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc----------------
Confidence            5543 2555555 45555555555555543 4555555666666666666555 3444333221                


Q ss_pred             hhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccc--
Q 036642          719 FLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI--  796 (938)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~--  796 (938)
                                                         |..||+|+|+++ .||-+|.+|+.|++|-|.+|.+. ..|..+  
T Consensus       213 -----------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~  255 (722)
T KOG0532|consen  213 -----------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE  255 (722)
T ss_pred             -----------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence                                               356777888877 67878888888888888888777 555544  


Q ss_pred             -cccCCCCEEECCCCc
Q 036642          797 -GAMRSLESIDFSLNQ  811 (938)
Q Consensus       797 -~~l~~L~~LdLs~N~  811 (938)
                       |...-.++|+..-++
T Consensus       256 kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  256 KGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ccceeeeeeecchhcc
Confidence             333445566666553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=1.1e-12  Score=140.55  Aligned_cols=195  Identities=26%  Similarity=0.412  Sum_probs=138.2

Q ss_pred             CCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEe
Q 036642          581 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI  660 (938)
Q Consensus       581 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  660 (938)
                      +.--...|++.|++. .+|..+..+..|+.+.|..|.+...+..+.++..|+.+||+.|+++. +|..+.  .--|+.|.
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC--~lpLkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH-LPDGLC--DLPLKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc-CChhhh--cCcceeEE
Confidence            444556788999988 78888888889999999999887655588888888888888888764 666665  23477888


Q ss_pred             eCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeee
Q 036642          661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVM  740 (938)
Q Consensus       661 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (938)
                      +++|+++. +|+.++.+..|..||.+.|.+. .+|..++.+.+|                                    
T Consensus       150 ~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl------------------------------------  191 (722)
T KOG0532|consen  150 VSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL------------------------------------  191 (722)
T ss_pred             EecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH------------------------------------
Confidence            88888764 6667777777777777777776 566666666655                                    


Q ss_pred             cCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccc
Q 036642          741 KGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM  820 (938)
Q Consensus       741 ~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l  820 (938)
                                    +.|.+..|++. .+|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|+|.. -|..+
T Consensus       192 --------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI  253 (722)
T KOG0532|consen  192 --------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQI  253 (722)
T ss_pred             --------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence                          33445566666 567777754 3667777777777 677777777777777777777763 34433


Q ss_pred             ---cCCCCCCeEeCcCCc
Q 036642          821 ---SSLTYLNHLNLSNNN  835 (938)
Q Consensus       821 ---~~l~~L~~L~ls~N~  835 (938)
                         +...-.++|+..-++
T Consensus       254 C~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  254 CEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             Hhccceeeeeeecchhcc
Confidence               234445666666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=6.4e-12  Score=127.40  Aligned_cols=241  Identities=25%  Similarity=0.232  Sum_probs=135.8

Q ss_pred             ccCCccCCCCCCEEeCCCCCCCCC---cccccccCCCCCcEEecCCC---cCCCCCCcC-------CCCCCcccEEECCC
Q 036642          109 VNPSLLDLKHLSYLDLSYNDFQGV---QIPRFICSMGNLRYLNLSYT---QFVGMIPPQ-------LGNLSNLQYLDLSW  175 (938)
Q Consensus       109 l~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------~~~L~~L~~L~Ls~  175 (938)
                      +-+.+.....+++++||+|.|...   .+...+.+.++|+..++|+-   +....+|+.       +..+++|++||||+
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            334455667778888888877531   12334556677777777653   222334433       34556788888888


Q ss_pred             CcccccCccc----cCCCCCCCEEeCCCCCCCCCcc-----------hhhhhCCCCCCcEEEcCCCCCCCCCc----ccc
Q 036642          176 NFLYVENLWW----LPGLSFLKDLDLSYVNLSKASD-----------WLRVTNTLPSLVKLRLSRCQLHHLPP----LAI  236 (938)
Q Consensus       176 n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~~~l~~L~~L~L~~n~i~~~~~----~~l  236 (938)
                      |.+....++.    +..+..|++|.|.+|.+.....           .......-++|+++...+|++...+.    ..|
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            8776655543    3456777777777776654311           11223445667777777777665543    344


Q ss_pred             cCCCCCCEEECCCCCCCCcc---CcccccCCCCCCEEEccCCcccCC----CCccccCCCCCCEEECcCCcCCCccchhh
Q 036642          237 ANFSTLTTLDLLYNQFDNSF---VPNWVFGLIQLVFLDLRRNNFQGP----IPEGLQNLTSLKHLLLDSNRFNSSIPNWL  309 (938)
Q Consensus       237 ~~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  309 (938)
                      ...+.|+.+.++.|.|....   ....+..+++|++|||.+|.++..    +...+..+++|++|++++|.+.......+
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            55567777777777665321   123455666777777777666532    22334555666666666666654333332


Q ss_pred             h-----cCCCCCEEEccCCcCCchh----hHhhhccCCCCeeecCCCcC
Q 036642          310 Y-----RFNRLESLGVSNNSLQGRV----IRSMASLCNLRSVMLSCVKL  349 (938)
Q Consensus       310 ~-----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l  349 (938)
                      .     ..++|+++.+.+|.++...    ...+...+.|+.|++++|.+
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            1     3456666666666655322    12233445555555555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=5.9e-11  Score=133.77  Aligned_cols=199  Identities=30%  Similarity=0.483  Sum_probs=108.0

Q ss_pred             eeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCC-CCcEEEcccccccccccccccCcCCcEEECCCCc
Q 036642          562 FLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI-SLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENE  640 (938)
Q Consensus       562 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~  640 (938)
                      .++.+.|.+...+. .+..++.++.|++.+|.++ .+|.....+. +|+.|++++|++......+.+++.|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence            56777776643322 2344567777777777777 4555555553 7777777777776543456667777777777777


Q ss_pred             cCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhh
Q 036642          641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFL  720 (938)
Q Consensus       641 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~  720 (938)
                      +.. +|.... ..+.|+.|++++|++.. +|........|+++++++|+.. .++..+.++..+                
T Consensus       175 l~~-l~~~~~-~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l----------------  234 (394)
T COG4886         175 LSD-LPKLLS-NLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL----------------  234 (394)
T ss_pred             hhh-hhhhhh-hhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc----------------
Confidence            654 443332 35555666666665554 3333333344555555555322 222223222222                


Q ss_pred             hccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccC
Q 036642          721 LYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMR  800 (938)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~  800 (938)
                                                        ..+.+++|++. .+|..++.++.++.|++++|.++ .++. ++.+.
T Consensus       235 ----------------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~  277 (394)
T COG4886         235 ----------------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLT  277 (394)
T ss_pred             ----------------------------------cccccCCceee-eccchhccccccceecccccccc-cccc-ccccC
Confidence                                              23334555554 23555555555666666666655 3333 55555


Q ss_pred             CCCEEECCCCcccccCCcc
Q 036642          801 SLESIDFSLNQLSGEIPQS  819 (938)
Q Consensus       801 ~L~~LdLs~N~l~~~ip~~  819 (938)
                      +++.||+++|.++...|..
T Consensus       278 ~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         278 NLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccCEEeccCccccccchhh
Confidence            6666666666555544443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=7.6e-11  Score=132.89  Aligned_cols=197  Identities=35%  Similarity=0.505  Sum_probs=106.8

Q ss_pred             EEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCc-CCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC
Q 036642          586 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCT-ALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN  664 (938)
Q Consensus       586 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n  664 (938)
                      .++++.|.+... +..+..++.++.|++.+|.++...+.....+ +|+.|++++|++.. +|..+. .++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~-~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLR-NLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhh-ccccccccccCCc
Confidence            455555555322 2223344556666666666665444444443 66666666666543 333333 5666666666666


Q ss_pred             cccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcc
Q 036642          665 KFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRA  744 (938)
Q Consensus       665 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (938)
                      ++.. +|...+..+.|+.|++++|+++ .+|........|                                        
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L----------------------------------------  211 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL----------------------------------------  211 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh----------------------------------------
Confidence            6654 3333335566666666666665 444433222222                                        


Q ss_pred             hhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCC
Q 036642          745 AEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT  824 (938)
Q Consensus       745 ~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  824 (938)
                                ..+++++|++. .++..+.++..+..+.+++|++. .+|..++.+++++.|++++|.++. ++. +..+.
T Consensus       212 ----------~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~  277 (394)
T COG4886         212 ----------EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLT  277 (394)
T ss_pred             ----------hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccC
Confidence                      34445555433 35555666666666666666665 335556666666666666666663 232 56666


Q ss_pred             CCCeEeCcCCcccccCC
Q 036642          825 YLNHLNLSNNNLTGKIP  841 (938)
Q Consensus       825 ~L~~L~ls~N~l~g~ip  841 (938)
                      .++.|++++|.++...|
T Consensus       278 ~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         278 NLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccCEEeccCccccccch
Confidence            66666666666655444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.6e-11  Score=127.80  Aligned_cols=213  Identities=27%  Similarity=0.260  Sum_probs=93.8

Q ss_pred             CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCC--cCCCCCCcccEEECCCCcccccCcccc-CCCCC
Q 036642          115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIP--PQLGNLSNLQYLDLSWNFLYVENLWWL-PGLSF  191 (938)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~L~~L~~L~Ls~n~i~~~~~~~~-~~l~~  191 (938)
                      +++.|+...|.+..+...........|++++.||||.|-+..-.|  .-...|++|+.|+++.|++........ ..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            344455555544444321111233445555555555554432111  122344555555555554432222111 12344


Q ss_pred             CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642          192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD  271 (938)
Q Consensus       192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  271 (938)
                      |+.|.++.|.++ -.++......+|+|+.|+|..|....+.......+..|+.|||++|.+-....-..           
T Consensus       199 lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~-----------  266 (505)
T KOG3207|consen  199 LKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK-----------  266 (505)
T ss_pred             hheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc-----------
Confidence            444444444444 22223333444444444444443222222233333444444444444433211123           


Q ss_pred             ccCCcccCCCCccccCCCCCCEEECcCCcCCCc-cchh-----hhcCCCCCEEEccCCcCCch-hhHhhhccCCCCeeec
Q 036642          272 LRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS-IPNW-----LYRFNRLESLGVSNNSLQGR-VIRSMASLCNLRSVML  344 (938)
Q Consensus       272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L  344 (938)
                                   .+.++.|+.|+++.+.+... .|+.     ...+++|++|++..|++... ....+..+++|+.|.+
T Consensus       267 -------------~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  267 -------------VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             -------------cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence                         34455555555555554431 1211     23556777777777766321 1233455666777777


Q ss_pred             CCCcCccc
Q 036642          345 SCVKLSQE  352 (938)
Q Consensus       345 ~~n~l~~~  352 (938)
                      ..|.+..+
T Consensus       334 ~~n~ln~e  341 (505)
T KOG3207|consen  334 TLNYLNKE  341 (505)
T ss_pred             cccccccc
Confidence            77777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=5.9e-11  Score=113.77  Aligned_cols=108  Identities=26%  Similarity=0.264  Sum_probs=27.0

Q ss_pred             CCCCCCEEeCCCCCCCCCccccccc-CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642          115 DLKHLSYLDLSYNDFQGVQIPRFIC-SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK  193 (938)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  193 (938)
                      +..++++|+|++|.|+.+   +.++ .+.+|+.|++++|.|+..  +.+..+++|++|++++|+|+.+.......+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            344567777777777643   2233 466777777777777643  2466666777777776666654322122345555


Q ss_pred             EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCC
Q 036642          194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL  228 (938)
Q Consensus       194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i  228 (938)
                      +|++++|++....++ ..+..+++|+.|++.+|.+
T Consensus        92 ~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   92 ELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GG
T ss_pred             EEECcCCcCCChHHh-HHHHcCCCcceeeccCCcc
Confidence            555555555544331 2233344444444444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=6.4e-11  Score=120.26  Aligned_cols=255  Identities=22%  Similarity=0.213  Sum_probs=138.9

Q ss_pred             cccCCCCCcEEecCCCcCCCC----CCcCCCCCCcccEEECCCCcccccC---c-------cccCCCCCCCEEeCCCCCC
Q 036642          137 FICSMGNLRYLNLSYTQFVGM----IPPQLGNLSNLQYLDLSWNFLYVEN---L-------WWLPGLSFLKDLDLSYVNL  202 (938)
Q Consensus       137 ~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~L~~L~~L~Ls~n~i~~~~---~-------~~~~~l~~L~~L~Ls~n~l  202 (938)
                      .+..+..+++++||+|.+...    +...+.+.++|+..++++-......   +       .++..+++|+.++||.|-+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            345677888889998887644    3344566678888887754322111   1       1344556677777777755


Q ss_pred             CC--CcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCC
Q 036642          203 SK--ASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGP  280 (938)
Q Consensus       203 ~~--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  280 (938)
                      ..  ++.+...+..+..|++|+|.+|.+.-.....++.  .|..|.          .......-++|+++...+|++...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCcceEEEEeeccccccc
Confidence            42  3444445556666666666666654433222111  000000          011122334555555555554421


Q ss_pred             ----CCccccCCCCCCEEECcCCcCCC----ccchhhhcCCCCCEEEccCCcCCch----hhHhhhccCCCCeeecCCCc
Q 036642          281 ----IPEGLQNLTSLKHLLLDSNRFNS----SIPNWLYRFNRLESLGVSNNSLQGR----VIRSMASLCNLRSVMLSCVK  348 (938)
Q Consensus       281 ----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~  348 (938)
                          +...+...+.|+.+.+..|.+..    .+...+..+++|++|||.+|.++..    +...+..+++|+.+++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                12234445566666666665532    1223455666666666666666532    23445556667777777776


Q ss_pred             CccchhhHHHhhhcccccCccEEEccCCcCccc----cccccCCCCCccEEEccCCeec
Q 036642          349 LSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH----LTYKLGQFKNLYYLDLSNNSIV  403 (938)
Q Consensus       349 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~  403 (938)
                      +.......|...+....++|+.+.+.+|.++..    +.......+.|+.|+|++|.+.
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            665544433333333344777777777776632    2223455788888888888883

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=6.4e-11  Score=123.46  Aligned_cols=165  Identities=22%  Similarity=0.151  Sum_probs=96.9

Q ss_pred             CCCCcccEEECCCCcccccCc-cccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCccc-ccCCC
Q 036642          163 GNLSNLQYLDLSWNFLYVENL-WWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA-IANFS  240 (938)
Q Consensus       163 ~~L~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-l~~l~  240 (938)
                      +++.+|+...|.++.+..... .....+++++.|||+.|-+............+|+|+.|+++.|++....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            344555555555554443332 2345566666666666666666556666777788888888887765543322 22456


Q ss_pred             CCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCcc-chhhhcCCCCCEEE
Q 036642          241 TLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSI-PNWLYRFNRLESLG  319 (938)
Q Consensus       241 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~  319 (938)
                      +|+.|.+++|.++...+..-...+++|+.|+|..|...........-+..|++|+|++|++.... -...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            77777777777764333334456677777777777533232333344566777777777665321 13345666777777


Q ss_pred             ccCCcCCc
Q 036642          320 VSNNSLQG  327 (938)
Q Consensus       320 L~~n~l~~  327 (938)
                      ++.+.+..
T Consensus       278 ls~tgi~s  285 (505)
T KOG3207|consen  278 LSSTGIAS  285 (505)
T ss_pred             ccccCcch
Confidence            77666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=5.4e-10  Score=107.14  Aligned_cols=63  Identities=41%  Similarity=0.434  Sum_probs=11.7

Q ss_pred             cCCCCCcEEecCCCcCCCCCCcCCC-CCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCC
Q 036642          139 CSMGNLRYLNLSYTQFVGMIPPQLG-NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKA  205 (938)
Q Consensus       139 ~~l~~L~~L~Ls~n~l~~~~p~~~~-~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~  205 (938)
                      .+..++++|+|++|.|+.+  +.++ .+.+|++|++++|.|....  .++.++.|++|++++|+++.+
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc
Confidence            3555677888888877743  3454 4667777777777665432  344444444444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=3.1e-10  Score=112.26  Aligned_cols=106  Identities=25%  Similarity=0.310  Sum_probs=48.3

Q ss_pred             CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642          558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG  637 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls  637 (938)
                      +.++.|++|+|.+.. + +.+..+++|+.||+|+|.++ .+-.+-..+-++++|.|++|.+. .+..+..+-+|..||++
T Consensus       307 Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  307 PKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLS  382 (490)
T ss_pred             cceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheecccc
Confidence            444444444444442 1 11444455555555555554 22233334445555555555443 12234444555555555


Q ss_pred             CCccCCCC-ChhHhhhcCcccEEeeCCCcccc
Q 036642          638 ENEFVENI-PTWIGERFSRMVVLILRSNKFHS  668 (938)
Q Consensus       638 ~N~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~  668 (938)
                      +|++...- -..++ ++|.|+.+.|.+|.+.+
T Consensus       383 ~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  383 SNQIEELDEVNHIG-NLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccchhhHHHhcccc-cccHHHHHhhcCCCccc
Confidence            55543210 01223 45555555566665554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=7.6e-10  Score=109.50  Aligned_cols=205  Identities=23%  Similarity=0.218  Sum_probs=108.8

Q ss_pred             ccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccC-ccccC
Q 036642          109 VNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVEN-LWWLP  187 (938)
Q Consensus       109 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~-~~~~~  187 (938)
                      +|-.+.-+++|+.+.+|++.-..  +-.....-|.|+++...+..++.. | .+-....+....-+.-...... ...+.
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d  281 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSAD  281 (490)
T ss_pred             cccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEecc
Confidence            44556677888888888876542  222222346788888776655522 1 1111112211111111110000 11233


Q ss_pred             CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCC
Q 036642          188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL  267 (938)
Q Consensus       188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  267 (938)
                      ..+.|+++|||+|.++.+.   ....-.|+++.|++++|.+..+..  +..+++|+.|||++|.++.  ...|-..+.++
T Consensus       282 TWq~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNI  354 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE--CVGWHLKLGNI  354 (490)
T ss_pred             hHhhhhhccccccchhhhh---hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHh--hhhhHhhhcCE
Confidence            3456777777777776653   344556777777777777776653  6667777777777776653  13344455566


Q ss_pred             CEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCc-cchhhhcCCCCCEEEccCCcCC
Q 036642          268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS-IPNWLYRFNRLESLGVSNNSLQ  326 (938)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~  326 (938)
                      +.|.|+.|.+...  ..++++-+|..|++++|++... --..+++++.|+++.|.+|.+.
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            6666666655421  3345555556666666555421 1123445555555555555544

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.82  E-value=4.6e-09  Score=75.34  Aligned_cols=39  Identities=51%  Similarity=1.031  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceeeC
Q 036642           36 ESERRALLRFKQDLQ-DPSNRLASWIGY--EDCCAWAGVVCD   74 (938)
Q Consensus        36 ~~~~~~ll~~k~~~~-~~~~~l~~W~~~--~~~c~w~gv~c~   74 (938)
                      ++|++||++||+++. +|.+.+.+|+..  ++||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999998 577889999764  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=7.6e-10  Score=124.78  Aligned_cols=197  Identities=29%  Similarity=0.311  Sum_probs=134.8

Q ss_pred             CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642          115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD  194 (938)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  194 (938)
                      .+..++.+++..|.+..  +-..++.+.+|++|++.+|.|... ...+..+++|++|++++|.|+.+  ..+..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence            55667777788887773  334467778888888888888743 33377788888888888887654  34555666888


Q ss_pred             EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc-ccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEcc
Q 036642          195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP-LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLR  273 (938)
Q Consensus       195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  273 (938)
                      |++++|.++.+..    +..++.|+.+++++|.+..+.. . ...+.+++.+++.+|.+..   ...+..+..+..+++.
T Consensus       145 L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~---i~~~~~~~~l~~~~l~  216 (414)
T KOG0531|consen  145 LNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE---IEGLDLLKKLVLLSLL  216 (414)
T ss_pred             heeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc---ccchHHHHHHHHhhcc
Confidence            8888888877643    3447788888888888877765 3 5677788888888887764   4455555666666777


Q ss_pred             CCcccCCCCccccCCCC--CCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCc
Q 036642          274 RNNFQGPIPEGLQNLTS--LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG  327 (938)
Q Consensus       274 ~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  327 (938)
                      .|.++..-+  +..+..  |+.+++++|.+.. .+..+..+..+..+++.+|++..
T Consensus       217 ~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  217 DNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             cccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence            777764322  222233  7788888887763 33455667777777777777653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=8.5e-09  Score=81.14  Aligned_cols=60  Identities=43%  Similarity=0.596  Sum_probs=37.2

Q ss_pred             CCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcc
Q 036642          777 ALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNL  836 (938)
Q Consensus       777 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  836 (938)
                      +|+.|++++|+++...++.|..+++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666644445666666666666666666655556666666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=1.1e-08  Score=122.84  Aligned_cols=251  Identities=22%  Similarity=0.177  Sum_probs=108.5

Q ss_pred             CCcEEecCCCc--CCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcE
Q 036642          143 NLRYLNLSYTQ--FVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVK  220 (938)
Q Consensus       143 ~L~~L~Ls~n~--l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~  220 (938)
                      +|++|-+..|.  +....+..|..++.|++|||++|.-...-|..++.+-+||+|++++..+..   +|..+.++.+|.+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~---LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH---LPSGLGNLKKLIY  622 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc---cchHHHHHHhhhe
Confidence            44444444443  222222234445555555555444333344444444444444444444443   2345555556666


Q ss_pred             EEcCCCCCCCCCcccccCCCCCCEEECCCCCCC-CccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCC----EEE
Q 036642          221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD-NSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK----HLL  295 (938)
Q Consensus       221 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~  295 (938)
                      |++..+.-...++.....+.+|++|.+...... +......+.++.+|+.+.......  .+-..+...+.|.    .+.
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~  700 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS  700 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence            666655544444445555666666666554311 111122334444444444433222  0001111122221    222


Q ss_pred             CcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhc------cCCCCeeecCCCcCccchhhHHHhhhcccccCcc
Q 036642          296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMAS------LCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLE  369 (938)
Q Consensus       296 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~  369 (938)
                      +.++... ..+..+..+.+|+.|.+.++.+..........      ++++..+....+......      ....++++|+
T Consensus       701 ~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l------~~~~f~~~L~  773 (889)
T KOG4658|consen  701 IEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL------TWLLFAPHLT  773 (889)
T ss_pred             hcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc------chhhccCccc
Confidence            2222211 33445556667777777776664332222111      111222222222111111      1112344777


Q ss_pred             EEEccCCcCccccccccCCCCCccEEEccCCeeccc
Q 036642          370 ILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGP  405 (938)
Q Consensus       370 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  405 (938)
                      .|.+..+.....+.+....+..++.+-+..+.+.+.
T Consensus       774 ~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  774 SLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             EEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            777777766655555555555555544555554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=1.7e-08  Score=121.31  Aligned_cols=150  Identities=23%  Similarity=0.327  Sum_probs=103.5

Q ss_pred             CCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCC--CCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCC
Q 036642          190 SFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ--LHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL  267 (938)
Q Consensus       190 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  267 (938)
                      ...+...+-+|.+..+..    -...++|+.|-+..|.  +..+....|..++.|++|||++|.--+. +|..++.+-+|
T Consensus       523 ~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~L  597 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHL  597 (889)
T ss_pred             hheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhh
Confidence            345555555555544322    1234578888888875  6666667788888888888888654444 38888888888


Q ss_pred             CEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCc--CCchhhHhhhccCCCCeeecC
Q 036642          268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNS--LQGRVIRSMASLCNLRSVMLS  345 (938)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~L~  345 (938)
                      ++|++++..+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+....  ........+..+..|+.+...
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            88888888887 788888888888888888877666667777778888888887654  223334445555555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=2.2e-08  Score=78.78  Aligned_cols=60  Identities=30%  Similarity=0.455  Sum_probs=55.2

Q ss_pred             ceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcc
Q 036642          753 LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQL  812 (938)
Q Consensus       753 ~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l  812 (938)
                      .|+.|++++|+++...+..|.++++|+.|++++|.++...|++|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999965557889999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=3.8e-09  Score=119.11  Aligned_cols=85  Identities=24%  Similarity=0.240  Sum_probs=54.3

Q ss_pred             eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc---CCcc-ccCCCCCCeE
Q 036642          754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE---IPQS-MSSLTYLNHL  829 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L  829 (938)
                      ++.+++++|.+. .+|..+..+..+..|++++|++...-  .+.....+..+..+.|++...   .... ......+..+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            466777778777 45566777777888888888776432  244456667777777776532   1121 4455667777


Q ss_pred             eCcCCcccccCC
Q 036642          830 NLSNNNLTGKIP  841 (938)
Q Consensus       830 ~ls~N~l~g~ip  841 (938)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            777777766544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=5.8e-09  Score=103.52  Aligned_cols=183  Identities=25%  Similarity=0.212  Sum_probs=102.6

Q ss_pred             CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCc-ccccCcc-ccCCCCCCCEE
Q 036642          118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF-LYVENLW-WLPGLSFLKDL  195 (938)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L  195 (938)
                      .|++||||...|+...+-..+..|.+|+.|.|.++++.+.+...+++-.+|+.|+++.+. ++..... .+.+++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588899998888755555667788889999999888888877888888888888888764 2211111 24556666666


Q ss_pred             eCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCC
Q 036642          196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN  275 (938)
Q Consensus       196 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  275 (938)
                      +++.|.+....-....-.--++|+.|+++++.-.                      +....+..-...+++|.+|||++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn----------------------l~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN----------------------LQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh----------------------hhhhHHHHHHHhCCceeeeccccc
Confidence            6666655432110111111234444444443210                      111111222334556666666654


Q ss_pred             c-ccCCCCccccCCCCCCEEECcCCcCCCccchhh---hcCCCCCEEEccCCc
Q 036642          276 N-FQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWL---YRFNRLESLGVSNNS  324 (938)
Q Consensus       276 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~  324 (938)
                      . ++...-..+.+++.|++|.++.|..  .+|..+   ...+.|.+|++.++-
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            3 2322233445566666666666643  344433   345667777776653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=2.1e-08  Score=88.16  Aligned_cols=86  Identities=23%  Similarity=0.329  Sum_probs=47.8

Q ss_pred             eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642          755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN  834 (938)
Q Consensus       755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  834 (938)
                      +.++|++|.++ .+|.++..++.|+.||++.|.+. ..|+.+..|.++..||..+|.+. +||..+-.-+.....++.++
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            44556666666 56666666666666666666666 45555555666666666666655 34433322233333444555


Q ss_pred             cccccCCCC
Q 036642          835 NLTGKIPSS  843 (938)
Q Consensus       835 ~l~g~ip~~  843 (938)
                      ++.+..|.+
T Consensus       157 pl~~~~~~k  165 (177)
T KOG4579|consen  157 PLGDETKKK  165 (177)
T ss_pred             cccccCccc
Confidence            666555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.37  E-value=5.8e-09  Score=115.18  Aligned_cols=181  Identities=27%  Similarity=0.219  Sum_probs=108.9

Q ss_pred             cCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCc--C-------CCCCCcCCCCCCcccEEECCCCcccc
Q 036642          110 NPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQ--F-------VGMIPPQLGNLSNLQYLDLSWNFLYV  180 (938)
Q Consensus       110 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~--l-------~~~~p~~~~~L~~L~~L~Ls~n~i~~  180 (938)
                      |-++..++.||+|.|.++++...  -...+--..|++|.-++.-  +       .|.+-.++.. -+|.+.+.+.|.+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W-n~L~~a~fsyN~L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW-NKLATASFSYNRLVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh-hhHhhhhcchhhHHh
Confidence            55788999999999999988632  1111111234444332210  0       0111111111 245556666666543


Q ss_pred             cCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCccc
Q 036642          181 ENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNW  260 (938)
Q Consensus       181 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  260 (938)
                      . ...+.-++.|++|+|++|+++++    ..+..+++|++|||+.|.+..++.-....+. |+.|.+++|.++.   ...
T Consensus       179 m-D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t---L~g  249 (1096)
T KOG1859|consen  179 M-DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT---LRG  249 (1096)
T ss_pred             H-HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh---hhh
Confidence            2 23455566777777777777665    3566677777777777777777665556665 7777777777765   456


Q ss_pred             ccCCCCCCEEEccCCcccCCC-CccccCCCCCCEEECcCCcCC
Q 036642          261 VFGLIQLVFLDLRRNNFQGPI-PEGLQNLTSLKHLLLDSNRFN  302 (938)
Q Consensus       261 ~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~  302 (938)
                      +.++.+|+.||+++|-+.+.- -..+..+..|+.|+|.+|.+.
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            677777788888877665421 122445567777888887764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=1.2e-08  Score=112.91  Aligned_cols=198  Identities=26%  Similarity=0.288  Sum_probs=117.9

Q ss_pred             CCCCCEEEcCCCcccccC-CcccCCCCCCcEEEcccccccccccccccCc-CCcEEECCCCcc----------CCCCChh
Q 036642          581 YQNLMILDLSNNKFTGNL-PISLGSLISLQSLHLRKNNLSGTIHSLKNCT-ALLTLDVGENEF----------VENIPTW  648 (938)
Q Consensus       581 l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~-~L~~L~Ls~N~l----------~~~~p~~  648 (938)
                      +++++.|.+-.-.-.+.. |-.+..+.+|++|.|++|.+.. ..++..+. .|+.|.- +|.+          .|.+...
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc
Confidence            344444444333322222 6667778999999999999864 22222221 2333321 1211          0111111


Q ss_pred             HhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcc
Q 036642          649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS  728 (938)
Q Consensus       649 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  728 (938)
                      .  ....|...+.+.|++.. ...++.-++.|+.|||++|+++..-  .+.                             
T Consensus       161 ~--~Wn~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr-----------------------------  206 (1096)
T KOG1859|consen  161 P--VWNKLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLR-----------------------------  206 (1096)
T ss_pred             h--hhhhHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHH-----------------------------
Confidence            1  12345666666666653 3445555677777777777765210  111                             


Q ss_pred             hhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchh-ccCccCCCEEeCcCccCcccCCccccccCCCCEEEC
Q 036642          729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLE-VTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDF  807 (938)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdL  807 (938)
                                           .++.|+.|||+.|.+. .+|.- ...++ |+.|++++|.++..  ..+.+|.+|+.||+
T Consensus       207 ---------------------~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  207 ---------------------RLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDL  261 (1096)
T ss_pred             ---------------------hcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccch
Confidence                                 1234578899999998 56542 23333 89999999998843  34778899999999


Q ss_pred             CCCcccccC-CccccCCCCCCeEeCcCCccccc
Q 036642          808 SLNQLSGEI-PQSMSSLTYLNHLNLSNNNLTGK  839 (938)
Q Consensus       808 s~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~  839 (938)
                      |+|-|++-- -.-+..|.+|..|+|.+|++.+.
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            999887641 12244567788899999999874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.27  E-value=5.4e-08  Score=85.61  Aligned_cols=86  Identities=29%  Similarity=0.471  Sum_probs=74.6

Q ss_pred             eeEEEeecCccCccCchhccCc-cCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCc
Q 036642          754 VRIIDFSKNNFSGKIPLEVTNL-KALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLS  832 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  832 (938)
                      |+.++||+|.+. ..|+.|... +.++.|||++|+++ .+|+.+..++.|+.|+++.|++. ..|.-+..|.+|-+|+..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            477899999999 577777544 58999999999999 89999999999999999999999 578888889999999999


Q ss_pred             CCcccccCCCC
Q 036642          833 NNNLTGKIPSS  843 (938)
Q Consensus       833 ~N~l~g~ip~~  843 (938)
                      +|... +||..
T Consensus       132 ~na~~-eid~d  141 (177)
T KOG4579|consen  132 ENARA-EIDVD  141 (177)
T ss_pred             CCccc-cCcHH
Confidence            98876 67765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=2.7e-08  Score=98.90  Aligned_cols=181  Identities=24%  Similarity=0.214  Sum_probs=130.1

Q ss_pred             CcccEEECCCCcccccCcc-ccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCC-CCCCCc-ccccCCCCC
Q 036642          166 SNLQYLDLSWNFLYVENLW-WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ-LHHLPP-LAIANFSTL  242 (938)
Q Consensus       166 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~l~~l~~L  242 (938)
                      +.||+|||+...|+..... .+.++.+|+.|.+.++++.+  ++...+.+-.+|+.|+++.+. ++.... -.+.+++.|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            3588888888776644333 46788899999999888876  456778888999999999874 443322 346789999


Q ss_pred             CEEECCCCCCCCccCcccccC-CCCCCEEEccCCcc---cCCCCccccCCCCCCEEECcCCc-CCCccchhhhcCCCCCE
Q 036642          243 TTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRNNF---QGPIPEGLQNLTSLKHLLLDSNR-FNSSIPNWLYRFNRLES  317 (938)
Q Consensus       243 ~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~  317 (938)
                      +.|+++++.+....+...+.. -++|+.|+|+++.-   ...+..-...+++|.+|||++|. ++...-..|.+++.|++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            999999998876443333333 25789999998752   11222334678999999999875 34344456778999999


Q ss_pred             EEccCCcCCchhhHh---hhccCCCCeeecCCCcCc
Q 036642          318 LGVSNNSLQGRVIRS---MASLCNLRSVMLSCVKLS  350 (938)
Q Consensus       318 L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~  350 (938)
                      |.++.|..  .+|..   +...+.|.+|+..++--.
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence            99999963  44544   567789999999877544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=1.1e-06  Score=87.77  Aligned_cols=111  Identities=21%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             cccEEECCCCcccccCcc-cc-CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCE
Q 036642          167 NLQYLDLSWNFLYVENLW-WL-PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT  244 (938)
Q Consensus       167 ~L~~L~Ls~n~i~~~~~~-~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  244 (938)
                      .++.|.+.++.|..+... .| ...+.++.+||.+|.++...++...+.++|.|+.|+++.|++...+...-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            344444444444433222 22 2356777788888888887777778888888899998888887654433245678888


Q ss_pred             EECCCCCCCCccCcccccCCCCCCEEEccCCcc
Q 036642          245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF  277 (938)
Q Consensus       245 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  277 (938)
                      |-|.+..+........+..++.++.|.++.|.+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            888888776655566677788888888887744

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.15  E-value=1.6e-06  Score=85.41  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=20.8

Q ss_pred             CCCcccEEECCCCcccccCcccc----CCCCCCCEEeCCCC
Q 036642          164 NLSNLQYLDLSWNFLYVENLWWL----PGLSFLKDLDLSYV  200 (938)
Q Consensus       164 ~L~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~Ls~n  200 (938)
                      -+..++.+|||+|.|......++    ++-.+|+..+++.-
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~   68 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA   68 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence            35667777777777665544432    33445555555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=5.5e-07  Score=88.55  Aligned_cols=138  Identities=17%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             CCCCCCcEEEcCCCCCCCCCcc----cccCCCCCCEEECCCCCCCCccC----cccccCCCCCCEEEccCCcccCC----
Q 036642          213 NTLPSLVKLRLSRCQLHHLPPL----AIANFSTLTTLDLLYNQFDNSFV----PNWVFGLIQLVFLDLRRNNFQGP----  280 (938)
Q Consensus       213 ~~l~~L~~L~L~~n~i~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----  280 (938)
                      ..-|.|+......|++...+..    .+..-..|+++.+..|.|.-..+    -..++.+.+|+.|||..|.++-.    
T Consensus       154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            3445666666666666544331    22222566677777776652210    11234566777777777776532    


Q ss_pred             CCccccCCCCCCEEECcCCcCCCccchhhh------cCCCCCEEEccCCcCCchhhHh-----h--hccCCCCeeecCCC
Q 036642          281 IPEGLQNLTSLKHLLLDSNRFNSSIPNWLY------RFNRLESLGVSNNSLQGRVIRS-----M--ASLCNLRSVMLSCV  347 (938)
Q Consensus       281 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~------~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~L~~n  347 (938)
                      +...+...+.|++|.+.+|-++......+.      ..++|..|...+|.+.+.+...     +  ..++-|..+.+.+|
T Consensus       234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN  313 (388)
T COG5238         234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN  313 (388)
T ss_pred             HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence            223445566678888887777654433321      3467777777777655433211     1  23444445555555


Q ss_pred             cCc
Q 036642          348 KLS  350 (938)
Q Consensus       348 ~l~  350 (938)
                      .+.
T Consensus       314 r~~  316 (388)
T COG5238         314 RIK  316 (388)
T ss_pred             cch
Confidence            544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=1.3e-06  Score=87.22  Aligned_cols=61  Identities=23%  Similarity=0.227  Sum_probs=26.2

Q ss_pred             CCCCCEEECCCCCCCCcc-CcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCC
Q 036642          239 FSTLTTLDLLYNQFDNSF-VPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN  299 (938)
Q Consensus       239 l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  299 (938)
                      ++.++.+||.+|.++.-. +..-+.+++.|++|+++.|++...+...-....+|+.|-|.+.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT  131 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT  131 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence            345555555555554311 0112234555555555555544332211123344444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.94  E-value=1.6e-05  Score=75.39  Aligned_cols=125  Identities=20%  Similarity=0.163  Sum_probs=74.6

Q ss_pred             CCEEeCCCCCCCCCccccccc-CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeC
Q 036642          119 LSYLDLSYNDFQGVQIPRFIC-SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL  197 (938)
Q Consensus       119 L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  197 (938)
                      =+.+||.+.++..+  .. ++ -+.+...+||++|.+...  ..|..++.|.+|.+++|+|+.+.+..-..+++|+.|.|
T Consensus        21 e~e~~LR~lkip~i--en-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI--EN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             ccccccccccccch--hh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence            35566666655422  11 11 133566778888877633  34677788888888888888777776666777777777


Q ss_pred             CCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc---ccccCCCCCCEEECCC
Q 036642          198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP---LAIANFSTLTTLDLLY  249 (938)
Q Consensus       198 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~L~~  249 (938)
                      .+|++..+.++ ..+..+|+|+.|.+-+|.++....   -.+..+++|++||...
T Consensus        96 tnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   96 TNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77777665442 334455666666666665554332   2334444444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=5.2e-05  Score=82.00  Aligned_cols=77  Identities=10%  Similarity=0.081  Sum_probs=51.4

Q ss_pred             cCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccC
Q 036642          602 LGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQ  681 (938)
Q Consensus       602 ~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  681 (938)
                      +..+.+++.|++++|.++..+   .-..+|++|.++++.-...+|..+   .++|+.|++++|.....+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------ccc
Confidence            335688999999999877543   233468999998876656677644   25788888888833333443      466


Q ss_pred             eeecccccc
Q 036642          682 IVDLADNNL  690 (938)
Q Consensus       682 ~L~Ls~N~l  690 (938)
                      .|+++++..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            677766554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.73  E-value=2.2e-05  Score=56.31  Aligned_cols=35  Identities=34%  Similarity=0.612  Sum_probs=14.1

Q ss_pred             CCEEeCcCccCcccCCccccccCCCCEEECCCCccc
Q 036642          778 LQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS  813 (938)
Q Consensus       778 L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~  813 (938)
                      |++|++++|+|+ .+|+.++++++|+.||+++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23333444444444444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.0001  Score=79.79  Aligned_cols=55  Identities=11%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             CCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCc
Q 036642          412 HLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS  471 (938)
Q Consensus       412 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n  471 (938)
                      .+.+++.|++++|.++.+|   .-+.+|++|.+++|.-...+|..+  .++|+.|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3455666666666655554   122345555555544333334322  134455555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=1.6e-05  Score=93.56  Aligned_cols=112  Identities=20%  Similarity=0.227  Sum_probs=54.3

Q ss_pred             CCcccEEECCCCcccccC-ccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCC-CCcccccCCCCC
Q 036642          165 LSNLQYLDLSWNFLYVEN-LWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH-LPPLAIANFSTL  242 (938)
Q Consensus       165 L~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L  242 (938)
                      ||.|++|.+++-.+...+ .....++++|+.||+|+.+++.+    ..++.+++|+.|.+.+=.+.. ..-..+.++++|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            455555555443332222 12234455555555555555543    344555555555555544443 122344556666


Q ss_pred             CEEECCCCCCCCcc--C---cccccCCCCCCEEEccCCcccCC
Q 036642          243 TTLDLLYNQFDNSF--V---PNWVFGLIQLVFLDLRRNNFQGP  280 (938)
Q Consensus       243 ~~L~L~~n~l~~~~--~---~~~~~~l~~L~~L~L~~n~l~~~  280 (938)
                      ++||+|........  +   .+.-..+++|+.||.|++.+...
T Consensus       223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            66666655433211  0   11122466777777776666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=4.1e-05  Score=54.91  Aligned_cols=36  Identities=36%  Similarity=0.592  Sum_probs=32.2

Q ss_pred             ceeEEEeecCccCccCchhccCccCCCEEeCcCccCc
Q 036642          753 LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT  789 (938)
Q Consensus       753 ~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  789 (938)
                      .|+.|++++|+++ .+|.++++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5789999999999 68889999999999999999998

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.61  E-value=0.00011  Score=69.81  Aligned_cols=67  Identities=22%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             hCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCccc
Q 036642          212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQ  278 (938)
Q Consensus       212 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  278 (938)
                      |..++.|..|.+++|+|+.+.+.--..+++|+.|.|.+|.+....-...+..+++|++|.+-+|..+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence            3345555566666666666655555555666666666666654332334445555555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.48  E-value=4.9e-05  Score=89.53  Aligned_cols=141  Identities=21%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             CcccEEECCCCcccc-cCcccc-CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCC
Q 036642          166 SNLQYLDLSWNFLYV-ENLWWL-PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLT  243 (938)
Q Consensus       166 ~~L~~L~Ls~n~i~~-~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~  243 (938)
                      .+|++||+++..... ..+..+ ..+|.|++|.+++-.+... ++.....++|+|..||+++.+++.+  ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            356666665543211 111112 2355555555555444332 1334444555555555555555554  3455555555


Q ss_pred             EEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCcc------chhhhcCCCCCE
Q 036642          244 TLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSI------PNWLYRFNRLES  317 (938)
Q Consensus       244 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~  317 (938)
                      +|.+.+-.+........+++                        +++|+.||+|........      -+.-..+|+|+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~------------------------L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrf  254 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFN------------------------LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRF  254 (699)
T ss_pred             HHhccCCCCCchhhHHHHhc------------------------ccCCCeeeccccccccchHHHHHHHHhcccCccccE
Confidence            55555444433211233444                        445555555443332111      011123667777


Q ss_pred             EEccCCcCCchhhHhh
Q 036642          318 LGVSNNSLQGRVIRSM  333 (938)
Q Consensus       318 L~L~~n~l~~~~~~~l  333 (938)
                      ||.++..+.....+.+
T Consensus       255 LDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  255 LDCSGTDINEEILEEL  270 (699)
T ss_pred             EecCCcchhHHHHHHH
Confidence            7777777766555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=5.9e-05  Score=75.01  Aligned_cols=115  Identities=26%  Similarity=0.230  Sum_probs=74.4

Q ss_pred             CccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCC--cCCCCCCcCCCCCCcccEEECCCCccccc-C
Q 036642          106 VGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYT--QFVGMIPPQLGNLSNLQYLDLSWNFLYVE-N  182 (938)
Q Consensus       106 ~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~-~  182 (938)
                      .|.+..-.-.+..|+.|++.+..++..   ..+-.+++|++|.+|.|  ++.+.++....++++|++|++++|+|... .
T Consensus        32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst  108 (260)
T KOG2739|consen   32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST  108 (260)
T ss_pred             CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence            344444445556667777766666532   22446788999999999  66766666667779999999999988742 3


Q ss_pred             ccccCCCCCCCEEeCCCCCCCCCcchh-hhhCCCCCCcEEEc
Q 036642          183 LWWLPGLSFLKDLDLSYVNLSKASDWL-RVTNTLPSLVKLRL  223 (938)
Q Consensus       183 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~l~~L~~L~L  223 (938)
                      ...++.+.+|..|++.+|..+...+.- ..|.-+++|+.|+-
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            344566677777777777766653322 23444555555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.30  E-value=6.7e-06  Score=86.27  Aligned_cols=231  Identities=20%  Similarity=0.106  Sum_probs=115.0

Q ss_pred             CCCCEEeCCCCCCCCC-cccccccCCCCCcEEecCCCc-CCCCCCcCC-CCCCcccEEECCCCc-ccccCcc-ccCCCCC
Q 036642          117 KHLSYLDLSYNDFQGV-QIPRFICSMGNLRYLNLSYTQ-FVGMIPPQL-GNLSNLQYLDLSWNF-LYVENLW-WLPGLSF  191 (938)
Q Consensus       117 ~~L~~L~Ls~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~-~~L~~L~~L~Ls~n~-i~~~~~~-~~~~l~~  191 (938)
                      ..||.|.++++.=.+. ++-.+..+++++++|++.++. +++..-.++ ..+++|++|++..|. ++..... .-..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3567777777643322 233445677788888777775 222111122 356777777777642 3333323 2345677


Q ss_pred             CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccc----cCCCCCCEEECCCCC-CCCccCcccccCCCC
Q 036642          192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI----ANFSTLTTLDLLYNQ-FDNSFVPNWVFGLIQ  266 (938)
Q Consensus       192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l----~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~  266 (938)
                      |++++++.+.--.-..+-....++..++.+.+.+|.=.  ....+    ..+..+.++++.++. +++..+...-..+..
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            77777777643222223334455555666655544211  11111    233444555544442 332211122234566


Q ss_pred             CCEEEccCCcccC-CCCccc-cCCCCCCEEECcCCc-CCCccchhhh-cCCCCCEEEccCCcCCc--hhhHhhhccCCCC
Q 036642          267 LVFLDLRRNNFQG-PIPEGL-QNLTSLKHLLLDSNR-FNSSIPNWLY-RFNRLESLGVSNNSLQG--RVIRSMASLCNLR  340 (938)
Q Consensus       267 L~~L~L~~n~l~~-~~p~~l-~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~  340 (938)
                      |++|+.+++...+ ..-..+ .+..+|+.|.++.++ ++..--..++ +.+.|+.+++.++....  .+...-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            7777777665322 111122 345677777777765 2222222222 45667777777664321  1222223566677


Q ss_pred             eeecCCCcC
Q 036642          341 SVMLSCVKL  349 (938)
Q Consensus       341 ~L~L~~n~l  349 (938)
                      .+.++++..
T Consensus       376 ~lslshce~  384 (483)
T KOG4341|consen  376 VLSLSHCEL  384 (483)
T ss_pred             cCChhhhhh
Confidence            777766644

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.19  E-value=4.6e-05  Score=80.14  Aligned_cols=88  Identities=19%  Similarity=0.134  Sum_probs=40.5

Q ss_pred             ccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcC-cccccccc-CCCCCccEEEccCCeecc--cccccc
Q 036642          335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSV-SGHLTYKL-GQFKNLYYLDLSNNSIVG--PIPFSL  410 (938)
Q Consensus       335 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~l-~~l~~L~~L~Ls~n~l~~--~~~~~l  410 (938)
                      .+..|+.++.+++...+..+-   ..++.-..+|+.+.+..++. +......+ .+++.|+.+++..+....  .+...-
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l---~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVL---WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHH---HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence            345566666665544222111   13333334666666666642 11111111 345666666666654431  111222


Q ss_pred             cCCCCCcEEEccCcc
Q 036642          411 GHLSTLQFIDLSYNE  425 (938)
Q Consensus       411 ~~l~~L~~L~Ls~n~  425 (938)
                      .+++.|+.+.++++.
T Consensus       369 ~~C~~lr~lslshce  383 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCE  383 (483)
T ss_pred             cCCchhccCChhhhh
Confidence            345666666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.98  E-value=0.0017  Score=60.02  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=12.5

Q ss_pred             hCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECC
Q 036642          212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLL  248 (938)
Q Consensus       212 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~  248 (938)
                      +..+++++.+.+.+ .+..+....|..+++|+.+++.
T Consensus        54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             eecccccccccccc-cccccccccccccccccccccC
Confidence            33333444444432 3333333344444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.86  E-value=0.00048  Score=68.72  Aligned_cols=93  Identities=23%  Similarity=0.191  Sum_probs=55.3

Q ss_pred             cccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCC--cccccCccccCCCCCCCEEeCCCCCCCCCcchhhhh
Q 036642          135 PRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWN--FLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVT  212 (938)
Q Consensus       135 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  212 (938)
                      ......+..|+.|++.+..++..  ..+-.|++|+.|+++.|  ++..........+++|+++++++|++..+.. ...+
T Consensus        36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl  112 (260)
T KOG2739|consen   36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPL  112 (260)
T ss_pred             ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchh
Confidence            33344556777777777776633  34666778888888887  4544444444555777777777776665322 2334


Q ss_pred             CCCCCCcEEEcCCCCCCC
Q 036642          213 NTLPSLVKLRLSRCQLHH  230 (938)
Q Consensus       213 ~~l~~L~~L~L~~n~i~~  230 (938)
                      ..+.+|..|++.+|..+.
T Consensus       113 ~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhcchhhhhcccCCccc
Confidence            445555556665555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.002  Score=59.52  Aligned_cols=61  Identities=15%  Similarity=0.135  Sum_probs=26.2

Q ss_pred             hhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642          211 VTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR  274 (938)
Q Consensus       211 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  274 (938)
                      .|..+++|+.+.+.++ +..+....|.++++|+.+.+.+ .+.... ...+..+++|+.+++..
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~-~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG-DNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTTTT-TTECEEEETT
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccccc-cccccc-cccccccccccccccCc
Confidence            3444555555555543 5555555666666666666644 221111 22334455555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.00044  Score=68.94  Aligned_cols=100  Identities=27%  Similarity=0.196  Sum_probs=69.0

Q ss_pred             CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEE
Q 036642          557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTL  634 (938)
Q Consensus       557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L  634 (938)
                      +.+.+.|++.+|.++.+  .....++.|++|.||-|+|+..-|  +..|++|+.|+|+.|.|...-.  -+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45667777788777742  124567888888888888885543  6678888888888888875433  67888888888


Q ss_pred             ECCCCccCCCCChhH----hhhcCcccEEe
Q 036642          635 DVGENEFVENIPTWI----GERFSRMVVLI  660 (938)
Q Consensus       635 ~Ls~N~l~~~~p~~~----~~~l~~L~~L~  660 (938)
                      .|..|+-.|.-+...    ..-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888888777655432    22455555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.00039  Score=69.32  Aligned_cols=79  Identities=28%  Similarity=0.244  Sum_probs=37.7

Q ss_pred             CCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCC-CccccCCCCCCEEECcCCcCCCccch-----hhhc
Q 036642          238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPI-PEGLQNLTSLKHLLLDSNRFNSSIPN-----WLYR  311 (938)
Q Consensus       238 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~  311 (938)
                      +++.|++|.|+-|+|+.   ...+..|++|++|.|..|.|.... -.-+.++++|+.|.|..|.-.|.-+.     .+.-
T Consensus        39 kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             hcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            33444444444444433   333444444555555544443210 12234566666666666655544333     2445


Q ss_pred             CCCCCEEE
Q 036642          312 FNRLESLG  319 (938)
Q Consensus       312 l~~L~~L~  319 (938)
                      +++|+.||
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            66676664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.76  E-value=0.0019  Score=75.09  Aligned_cols=113  Identities=26%  Similarity=0.197  Sum_probs=58.3

Q ss_pred             CCCCCEEeCCCC-CCCCCcccccccCCCCCcEEecCCC-cCCCCCC----cCCCCCCcccEEECCCCc-ccccCccccCC
Q 036642          116 LKHLSYLDLSYN-DFQGVQIPRFICSMGNLRYLNLSYT-QFVGMIP----PQLGNLSNLQYLDLSWNF-LYVENLWWLPG  188 (938)
Q Consensus       116 l~~L~~L~Ls~n-~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~~~~L~~L~~L~Ls~n~-i~~~~~~~~~~  188 (938)
                      .+.|+.|.+.++ .+....+-.....+++|+.|+++++ ......+    .....+.+|+.|+++++. ++......+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            566666666665 2332112234456677777777652 1111111    223445666777776665 44444444433


Q ss_pred             -CCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCC
Q 036642          189 -LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL  228 (938)
Q Consensus       189 -l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i  228 (938)
                       +++|++|.+.++.-.....+......++.|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             5666666655554212223344455566666666666544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0046  Score=36.78  Aligned_cols=19  Identities=53%  Similarity=0.719  Sum_probs=9.7

Q ss_pred             CCEEECCCCcccccCCcccc
Q 036642          802 LESIDFSLNQLSGEIPQSMS  821 (938)
Q Consensus       802 L~~LdLs~N~l~~~ip~~l~  821 (938)
                      |++|||++|+++ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.31  E-value=0.0022  Score=74.59  Aligned_cols=13  Identities=31%  Similarity=0.299  Sum_probs=6.3

Q ss_pred             CCCCCEEECcCCc
Q 036642          288 LTSLKHLLLDSNR  300 (938)
Q Consensus       288 l~~L~~L~L~~n~  300 (938)
                      +++|++|+++++.
T Consensus       294 ~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  294 CPSLRELDLSGCH  306 (482)
T ss_pred             cCcccEEeeecCc
Confidence            4445555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.10  E-value=0.0071  Score=35.98  Aligned_cols=19  Identities=32%  Similarity=0.607  Sum_probs=9.0

Q ss_pred             eeEEEeecCccCccCchhcc
Q 036642          754 VRIIDFSKNNFSGKIPLEVT  773 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l~  773 (938)
                      |+.|||++|+++ .||++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344555555554 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.47  E-value=0.00061  Score=76.97  Aligned_cols=184  Identities=23%  Similarity=0.223  Sum_probs=90.4

Q ss_pred             ccEEecccccccccCC-----CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccC-CCcc
Q 036642          488 IYVLDLSFNQIHGQIP-----NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHEL-KKLQ  561 (938)
Q Consensus       488 L~~L~Ls~n~l~~~~~-----~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l-~~L~  561 (938)
                      +..+.+.+|.+.....     .+.....|+.|++++|.+.                     +.....++..+... ..++
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~---------------------~~g~~~l~~~l~~~~~~l~  147 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG---------------------DEGARLLCEGLRLPQCLLQ  147 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc---------------------cHhHHHHHhhcccchHHHH
Confidence            6667777776654322     2344455555555555554                     22222233333332 3344


Q ss_pred             eeeccCccCCCc----cchhhhcCCCCCEEEcCCCcccc----cCCcc----cCCCCCCcEEEccccccccc----cc-c
Q 036642          562 FLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFTG----NLPIS----LGSLISLQSLHLRKNNLSGT----IH-S  624 (938)
Q Consensus       562 ~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~----~~~l~~L~~L~L~~n~l~~~----~~-~  624 (938)
                      +|++..|.+++.    +...+.....++.++++.|.+..    .++..    +....++++|++.+|.++..    +. .
T Consensus       148 ~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~  227 (478)
T KOG4308|consen  148 TLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV  227 (478)
T ss_pred             HHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence            444444444432    22333334455555555554420    11112    22355666777777665531    11 3


Q ss_pred             cccCcC-CcEEECCCCccCCCCChhHhh---hc-CcccEEeeCCCcccccCC----ccccCCCccCeeecccccccc
Q 036642          625 LKNCTA-LLTLDVGENEFVENIPTWIGE---RF-SRMVVLILRSNKFHSLLP----KGLCDLAFLQIVDLADNNLSG  692 (938)
Q Consensus       625 l~~l~~-L~~L~Ls~N~l~~~~p~~~~~---~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~N~l~~  692 (938)
                      +...++ +.++++..|.+.+..-..+..   .+ ..++.++++.|+++..-.    ..+..++.++.+.+++|.+..
T Consensus       228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            444444 566777777654331111111   12 345677777777765433    334456677777777777753

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.32  E-value=0.00094  Score=75.45  Aligned_cols=61  Identities=34%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             cceeeccCccCCCc----cchhhhcC-CCCCEEEcCCCcccccC----CcccCCCCCCcEEEcccccccc
Q 036642          560 LQFLYLRGNFLQGE----LTDCWMNY-QNLMILDLSNNKFTGNL----PISLGSLISLQSLHLRKNNLSG  620 (938)
Q Consensus       560 L~~L~ls~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~  620 (938)
                      +..+++..|++.+.    ..+.+..+ ..+++++++.|.++..-    +..+..++.++.+.++.|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            44455555554422    22233333 45566666666665322    2334456677777777777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.63  E-value=0.012  Score=57.49  Aligned_cols=82  Identities=18%  Similarity=0.204  Sum_probs=69.7

Q ss_pred             ceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCc
Q 036642          753 LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLS  832 (938)
Q Consensus       753 ~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  832 (938)
                      ..+.||++.|++. ..-..+.-++.|..|+++.|++. ..|+.++++..+..+++..|..+ ..|-++..++.++++++-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            4478999999887 45667777888888999999998 78888999999999999888888 678999999999999999


Q ss_pred             CCccc
Q 036642          833 NNNLT  837 (938)
Q Consensus       833 ~N~l~  837 (938)
                      .|+|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            88865

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.26  E-value=0.2  Score=27.52  Aligned_cols=11  Identities=45%  Similarity=0.724  Sum_probs=3.4

Q ss_pred             CCEEECCCCcc
Q 036642          802 LESIDFSLNQL  812 (938)
Q Consensus       802 L~~LdLs~N~l  812 (938)
                      |+.|||++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.84  E-value=0.088  Score=50.77  Aligned_cols=81  Identities=25%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             ccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCC-CCCCCCcccccCCCCCCEEE
Q 036642          168 LQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC-QLHHLPPLAIANFSTLTTLD  246 (938)
Q Consensus       168 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~L~~L~  246 (938)
                      ++.+|-++..|..+....+.+++.++.|.+.+|.--+...+-..-+-.++|+.|++++| +|+...-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            44444444444444444444444444444444422211111111123355666666655 34444444444555555544


Q ss_pred             CC
Q 036642          247 LL  248 (938)
Q Consensus       247 L~  248 (938)
                      +.
T Consensus       183 l~  184 (221)
T KOG3864|consen  183 LY  184 (221)
T ss_pred             hc
Confidence            43

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.04  E-value=0.18  Score=48.74  Aligned_cols=83  Identities=22%  Similarity=0.222  Sum_probs=47.6

Q ss_pred             CCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCC-cCccccccccCCCCC
Q 036642          313 NRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS-SVSGHLTYKLGQFKN  391 (938)
Q Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~  391 (938)
                      ..++.+|.++..|.....+.+..++.++.|.+.+|+--+..--.   .++...++|+.|++++| +|+...-..+..+++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH---HhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            45677888888887777777888888888888777554332110   22333345666666554 233333333444444


Q ss_pred             ccEEEcc
Q 036642          392 LYYLDLS  398 (938)
Q Consensus       392 L~~L~Ls  398 (938)
                      |+.|.++
T Consensus       178 Lr~L~l~  184 (221)
T KOG3864|consen  178 LRRLHLY  184 (221)
T ss_pred             hHHHHhc
Confidence            5444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.43  E-value=0.74  Score=28.50  Aligned_cols=21  Identities=52%  Similarity=0.708  Sum_probs=12.3

Q ss_pred             CCCcEEEcCCCCCCCCCcccc
Q 036642          216 PSLVKLRLSRCQLHHLPPLAI  236 (938)
Q Consensus       216 ~~L~~L~L~~n~i~~~~~~~l  236 (938)
                      ++|+.|+|++|+++.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666666655444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.43  E-value=0.74  Score=28.50  Aligned_cols=21  Identities=52%  Similarity=0.708  Sum_probs=12.3

Q ss_pred             CCCcEEEcCCCCCCCCCcccc
Q 036642          216 PSLVKLRLSRCQLHHLPPLAI  236 (938)
Q Consensus       216 ~~L~~L~L~~n~i~~~~~~~l  236 (938)
                      ++|+.|+|++|+++.+++..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666666655444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.75  E-value=0.022  Score=55.73  Aligned_cols=94  Identities=21%  Similarity=0.224  Sum_probs=59.5

Q ss_pred             CCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchh
Q 036642          229 HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNW  308 (938)
Q Consensus       229 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  308 (938)
                      +.++...+......+.||++.|++..  ....+.-++.|..|+++.|.+. ..|..+.....++.+++..|..+ ..|.+
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s  106 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS  106 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence            34444455666677777777776643  2334455566777777777665 56666666666677777666664 46666


Q ss_pred             hhcCCCCCEEEccCCcCC
Q 036642          309 LYRFNRLESLGVSNNSLQ  326 (938)
Q Consensus       309 l~~l~~L~~L~L~~n~l~  326 (938)
                      ++..++++++++.++.+.
T Consensus       107 ~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccccCCcchhhhccCcch
Confidence            777777777776666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.30  E-value=0.88  Score=28.16  Aligned_cols=14  Identities=50%  Similarity=0.619  Sum_probs=7.0

Q ss_pred             CCCCEEECCCCccc
Q 036642          800 RSLESIDFSLNQLS  813 (938)
Q Consensus       800 ~~L~~LdLs~N~l~  813 (938)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.30  E-value=0.88  Score=28.16  Aligned_cols=14  Identities=50%  Similarity=0.619  Sum_probs=7.0

Q ss_pred             CCCCEEECCCCccc
Q 036642          800 RSLESIDFSLNQLS  813 (938)
Q Consensus       800 ~~L~~LdLs~N~l~  813 (938)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	938
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-41
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-24
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-41
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-24
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		9e-08
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		2e-07
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		3e-07
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-07
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		6e-07
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		6e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		6e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		4e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		6e-05
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		2e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		2e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		2e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		3e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		4e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		4e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		5e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 191/664 (28%), Positives = 278/664 (41%), Gaps = 80/664 (12%)
Query: 266 QLVFLDLRRNNFQGPIPE--GLQNLTSLKHLLLDSNR--FNSSIPNWLYRFNRLESLGVS 321
            L  LDL RN+  GP+     L + + LK L + SN   F   +   L + N LE L +S
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 156
Query: 322 NNSLQGRVIRS--MASLCN-LRSVMLSCVKLSQEIS-------EIFDIFSGCVSSG---- 367
            NS+ G  +    ++  C  L+ + +S  K+S ++        E  D+ S   S+G    
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 368 -----LEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422
                L+ L + G+ +SG  +  +     L  L++S+N  VGPIP     L +LQ++ L+
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 274
Query: 423 YNELNGMNDNWIPPF------QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476
            N+  G     IP F       L  L L   H     P +  S   L  L LS +  +G 
Sbjct: 275 ENKFTG----EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 477 IPNIFWSSASQIYVLDLSFNQIHGQIP-NLTN-AAQLEVLSLGSNSFSGA-LPLISSN-- 531
           +P         + VLDLSFN+  G++P +LTN +A L  L L SN+FSG  LP +  N  
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 532 --LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589
             L EL   NN  +G I   +        +L  L+L  N+L G +     +   L  L L
Sbjct: 391 NTLQELYLQNNGFTGKIPPTL----SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 590 SNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTIHS-LKNCTALLTLDVGENEFVENIPTW 648
             N   G                   N+L+G I S L NCT L  + +  N     IP W
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
           IG R   + +L L +N F   +P  L D   L  +DL  N  +G +P  +      +  N
Sbjct: 507 IG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 709 SHAGKAIQY-------------------------QFLLYASRAPSTAMLLEDALVVMKGR 743
             AGK   Y                         Q    ++R P           V  G 
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI-----TSRVYGGH 620
Query: 744 AAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLE 803
            +        +  +D S N  SG IP E+ ++  L   NL +N  +G IP+ +G +R L 
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 680
Query: 804 SIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDASSYAGN-DLCGA 862
            +D S N+L G IPQ+M                +G IP   Q ++F  + +  N  LCG 
Sbjct: 681 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 740
Query: 863 PLPR 866
           PLPR
Sbjct: 741 PLPR 744

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 193/474 (40%), Gaps = 89/474 (18%)
Query: 381 HLTYKLGQFK---NLYYLDLSNNSIVGPIPF--SLGHLSTLQFIDLSYNELNGMNDNWIP 435
           H+   +  FK   +L  LDLS NS+ GP+    SLG  S L+F+++S N L+        
Sbjct: 85  HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 136
Query: 436 PFQLATLGLRHCHLGSRFPSWLHSQKHLN---YLDLSYSGITGS--IPNIFWSSASQIYV 490
                            FP  +     LN    LDLS + I+G+  +  +      ++  
Sbjct: 137 -----------------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 179
Query: 491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS--SNLIELDFSNNSISGSIFH 548
           L +S N+I G + +++    LE L + SN+FS  +P +   S L  LD S N +SG    
Sbjct: 180 LAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 238
Query: 549 FICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXX 608
            I        +L+ L +  N   G +    +  ++L  L L+ NKFTG            
Sbjct: 239 AI----STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI---------- 282
Query: 609 XXXXXRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS 668
                  + LSG       C  L  LD+  N F   +P + G       + +  +N    
Sbjct: 283 ------PDFLSGA------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 669 LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS 728
           L    L  +  L+++DL+ N  SGE+P  + NL A +     +        L    + P 
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFF 788
                                  N ++ +    N F+GKIP  ++N   L S +LS N+ 
Sbjct: 391 -----------------------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 789 TGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPS 842
           +G IP S+G++  L  +   LN L GEIPQ +                TG+IPS
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  166 bits (420), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 191/664 (28%), Positives = 278/664 (41%), Gaps = 80/664 (12%)
Query: 266 QLVFLDLRRNNFQGPIPE--GLQNLTSLKHLLLDSNR--FNSSIPNWLYRFNRLESLGVS 321
            L  LDL RN+  GP+     L + + LK L + SN   F   +   L + N LE L +S
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 159
Query: 322 NNSLQGRVIRS--MASLCN-LRSVMLSCVKLSQEIS-------EIFDIFSGCVSSG---- 367
            NS+ G  +    ++  C  L+ + +S  K+S ++        E  D+ S   S+G    
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 368 -----LEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422
                L+ L + G+ +SG  +  +     L  L++S+N  VGPIP     L +LQ++ L+
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 423 YNELNGMNDNWIPPF------QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476
            N+  G     IP F       L  L L   H     P +  S   L  L LS +  +G 
Sbjct: 278 ENKFTG----EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 477 IPNIFWSSASQIYVLDLSFNQIHGQIP-NLTN-AAQLEVLSLGSNSFSGA-LPLISSN-- 531
           +P         + VLDLSFN+  G++P +LTN +A L  L L SN+FSG  LP +  N  
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 532 --LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589
             L EL   NN  +G I   +        +L  L+L  N+L G +     +   L  L L
Sbjct: 394 NTLQELYLQNNGFTGKIPPTL----SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 590 SNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTIHS-LKNCTALLTLDVGENEFVENIPTW 648
             N   G                   N+L+G I S L NCT L  + +  N     IP W
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
           IG R   + +L L +N F   +P  L D   L  +DL  N  +G +P  +      +  N
Sbjct: 510 IG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 709 SHAGKAIQY-------------------------QFLLYASRAPSTAMLLEDALVVMKGR 743
             AGK   Y                         Q    ++R P           V  G 
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI-----TSRVYGGH 623
Query: 744 AAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLE 803
            +        +  +D S N  SG IP E+ ++  L   NL +N  +G IP+ +G +R L 
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683
Query: 804 SIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPSSTQLQSFDASSYAGN-DLCGA 862
            +D S N+L G IPQ+M                +G IP   Q ++F  + +  N  LCG 
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743
Query: 863 PLPR 866
           PLPR
Sbjct: 744 PLPR 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 193/474 (40%), Gaps = 89/474 (18%)
Query: 381 HLTYKLGQFK---NLYYLDLSNNSIVGPIPF--SLGHLSTLQFIDLSYNELNGMNDNWIP 435
           H+   +  FK   +L  LDLS NS+ GP+    SLG  S L+F+++S N L+        
Sbjct: 88  HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 139
Query: 436 PFQLATLGLRHCHLGSRFPSWLHSQKHLN---YLDLSYSGITGS--IPNIFWSSASQIYV 490
                            FP  +     LN    LDLS + I+G+  +  +      ++  
Sbjct: 140 -----------------FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS--SNLIELDFSNNSISGSIFH 548
           L +S N+I G + +++    LE L + SN+FS  +P +   S L  LD S N +SG    
Sbjct: 183 LAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241
Query: 549 FICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXX 608
            I        +L+ L +  N   G +    +  ++L  L L+ NKFTG            
Sbjct: 242 AI----STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEI---------- 285
Query: 609 XXXXXRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS 668
                  + LSG       C  L  LD+  N F   +P + G       + +  +N    
Sbjct: 286 ------PDFLSGA------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 669 LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS 728
           L    L  +  L+++DL+ N  SGE+P  + NL A +     +        L    + P 
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFF 788
                                  N ++ +    N F+GKIP  ++N   L S +LS N+ 
Sbjct: 394 -----------------------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 789 TGRIPESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXXXXXXXXXXXXTGKIPS 842
           +G IP S+G++  L  +   LN L GEIPQ +                TG+IPS
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 30/253 (11%)
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           NN  GPIP  +  LT L +L +     + +IP++L +   L +L  S N+L G +  S++
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
           SL NL  +     ++S  I + +  FS   +S    + +  + ++G +        NL +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTS----MTISRNRLTGKIPPTFANL-NLAF 201
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFP 454
           +DLS N + G      G     Q I L+ N L          F L  +GL          
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL---------AFDLGKVGL---------- 242
Query: 455 SWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 514
                 K+LN LDL  + I G++P    +    ++ L++SFN + G+IP   N  + +V 
Sbjct: 243 -----SKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
Query: 515 SLGSNSFSGALPL 527
           +  +N      PL
Sbjct: 297 AYANNKCLCGSPL 309

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 123/294 (41%), Gaps = 76/294 (25%)
Query: 405 PIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLN 464
           PIP SL +L  L F+      + G+N N + P   A   L   H                
Sbjct: 67  PIPSSLANLPYLNFL-----YIGGIN-NLVGPIPPAIAKLTQLH---------------- 104
Query: 465 YLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGA 524
           YL ++++ ++G+IP+ F S    +  LD S+N + G +P                     
Sbjct: 105 YLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLP--------------------- 142
Query: 525 LPLISS--NLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ 582
            P ISS  NL+ + F  N ISG+I     Y +   K    + +  N L G++   + N  
Sbjct: 143 -PSISSLPNLVGITFDGNRISGAIPD--SYGSFS-KLFTSMTISRNRLTGKIPPTFANL- 197
Query: 583 NLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTIHSLKNCTALLTLDVGENEFV 642
           NL  +DLS N   G+                 KN  +  IH  KN    L  D+G+    
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGS---------DKN--TQKIHLAKNS---LAFDLGKVGLS 243
Query: 643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPR 696
           +N           +  L LR+N+ +  LP+GL  L FL  ++++ NNL GE+P+
Sbjct: 244 KN-----------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 26/220 (11%)
Query: 670 LPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPST 729
           +P  +  L  L  + +   N+SG +P  +  ++ +VTL+  +  A+        S  P+ 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD-FSYNALSGTLPPSISSLPNL 151
Query: 730 AMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT 789
             +  D   +       Y     L   +  S+N  +GKIP    NL  L   +LS N   
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 790 GRIP-----------------------ESIGAMRSLESIDFSLNQLSGEIPQSMXXXXXX 826
           G                            +G  ++L  +D   N++ G +PQ +      
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 827 XXXXXXXXXXTGKIPSSTQLQSFDASSYAGND-LCGAPLP 865
                      G+IP    LQ FD S+YA N  LCG+PLP
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMX 821
           NN  G IP  +  L  L    +++   +G IP+ +  +++L ++DFS N LSG +P S+ 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 822 XXXXXXXXXXXXXXXTGKIPSS 843
                          +G IP S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS 168

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 137/317 (43%), Gaps = 37/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L  LV + ++  Q+  + PLA  N + LT L L  NQ  +   P  +  L  L  L+L  
Sbjct: 84  LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N         L  LTSL+ L   SN+     P  L     LE L +S+N +    I  +A
Sbjct: 139 NTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 192
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
            L NL S++ +        ++I DI    + + L+ L L G+ +    T  L    NL  
Sbjct: 193 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 243
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
           LDL+NN I    P S   L+ L  + L  N+++      I P      L  L L    L 
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 296
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
              P  + + K+L YL L ++ I+   P    SS +++  L  S N++   + +L N   
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKV-SDVSSLANLTN 350
Query: 511 LEVLSLGSNSFSGALPL 527
           +  LS G N  S   PL
Sbjct: 351 INWLSAGHNQISDLTPL 367

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 150/600 (25%), Positives = 227/600 (37%), Gaps = 106/600 (17%)
Query: 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
           D S++ L++  D L    T+     L L+  QL  LP      +S LT+LD+ +N   + 
Sbjct: 20  DCSHLKLTQVPDDLPTNITV-----LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SK 73
Query: 256 FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
             P     L  L  L+L+ N       +     T+L  L L SN       N   +   L
Sbjct: 74  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 133
Query: 316 ESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG 375
            +L +S+N L    + +   L NL+ ++LS  K+    SE  DIF+      LE+   + 
Sbjct: 134 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 193
Query: 376 SSVSGHLTYKLGQFKNLYY--------------LDLSNNSIVGPIPFSLGHLST------ 415
              S    + +G+   L+               L+L+N SI   +  S   LST      
Sbjct: 194 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN-LSLSNSQLSTTSNTTF 252
Query: 416 -------LQFIDLSYNELNGMNDN---WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNY 465
                  L  +DLSYN LN + ++   W+P  QL    L + ++   F   LH   ++ Y
Sbjct: 253 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLFNVRY 310
Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSF-------------NQIHGQIPNL-TNAAQL 511
           L+L  S    SI     S AS   + D SF             N I G   N+ T    L
Sbjct: 311 LNLKRSFTKQSI-----SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 365
Query: 512 EVLSLGSNSFSGALPLISSNLIE--------LDFSNNSISGSIFHFICYRAHELKKLQFL 563
           + LSL SNSF+    L +   +         L+ + N IS        +  H    L+ L
Sbjct: 366 KYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH----LEVL 420
Query: 564 YLRGNFLQGELT-DCWMNYQNLMILDLSNNKFTGNXXXXXXXXXXXXXXXXRKNNLSGTI 622
            L  N +  ELT   W   +N+  + LS NK+                   R+  L    
Sbjct: 421 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 480
Query: 623 HS------LKNCT---------------------ALLTLDVGENEFVE-------NIPTW 648
            S      L+N T                      L  LD+  N             P +
Sbjct: 481 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 540
Query: 649 IGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
             +  S + +L L SN F  +  +   DL  L+I+DL  NNL+       +N  ++ +LN
Sbjct: 541 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 600

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 182/452 (40%), Gaps = 72/452 (15%)
Query: 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
           D S++ L++  D L    T+     L L+  QL  LP      +S LT+LD+ +N   + 
Sbjct: 10  DCSHLKLTQVPDDLPTNITV-----LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SK 63
Query: 256 FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
             P     L  L  L+L+ N       +     T+L  L L SN       N   +   L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 316 ESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG 375
            +L +S+N L    + +   L NL+ ++LS  K+    SE  DIF+      LE+   + 
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 376 SSVSGHLTYKLGQFKNLYY--------------LDLSNNSIVGPIPFSLGHLST------ 415
              S    + +G+   L+               L+L+N SI   +  S   LST      
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN-LSLSNSQLSTTSNTTF 242
Query: 416 -------LQFIDLSYNELNGMNDN---WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNY 465
                  L  +DLSYN LN + ++   W+P  QL    L + ++   F   LH   ++ Y
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSF-------------NQIHGQIPNL-TNAAQL 511
           L+L  S    SI     S AS   + D SF             N I G   N+ T    L
Sbjct: 301 LNLKRSFTKQSI-----SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355
Query: 512 EVLSLGSNSFSGALPLISSNLIE--------LDFSNNSISGSIFHFICYRAHELKKLQFL 563
           + LSL SNSF+    L +   +         L+ + N IS        +  H    L+ L
Sbjct: 356 KYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH----LEVL 410
Query: 564 YLRGNFLQGELT-DCWMNYQNLMILDLSNNKF 594
            L  N +  ELT   W   +N+  + LS NK+
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 182/452 (40%), Gaps = 72/452 (15%)
Query: 196 DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
           D S++ L++  D L    T+     L L+  QL  LP      +S LT+LD+ +N   + 
Sbjct: 15  DCSHLKLTQVPDDLPTNITV-----LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SK 68
Query: 256 FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
             P     L  L  L+L+ N       +     T+L  L L SN       N   +   L
Sbjct: 69  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 128
Query: 316 ESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG 375
            +L +S+N L    + +   L NL+ ++LS  K+    SE  DIF+      LE+   + 
Sbjct: 129 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 188
Query: 376 SSVSGHLTYKLGQFKNLYY--------------LDLSNNSIVGPIPFSLGHLST------ 415
              S    + +G+   L+               L+L+N SI   +  S   LST      
Sbjct: 189 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN-LSLSNSQLSTTSNTTF 247
Query: 416 -------LQFIDLSYNELNGMNDN---WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNY 465
                  L  +DLSYN LN + ++   W+P  QL    L + ++   F   LH   ++ Y
Sbjct: 248 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLFNVRY 305
Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSF-------------NQIHGQIPNL-TNAAQL 511
           L+L  S    SI     S AS   + D SF             N I G   N+ T    L
Sbjct: 306 LNLKRSFTKQSI-----SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 360
Query: 512 EVLSLGSNSFSGALPLISSNLIE--------LDFSNNSISGSIFHFICYRAHELKKLQFL 563
           + LSL SNSF+    L +   +         L+ + N IS        +  H    L+ L
Sbjct: 361 KYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH----LEVL 415
Query: 564 YLRGNFLQGELT-DCWMNYQNLMILDLSNNKF 594
            L  N +  ELT   W   +N+  + LS NK+
Sbjct: 416 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 447

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 135/317 (42%), Gaps = 37/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L  LV + ++  Q+  + PLA  N + LT L L  NQ  +    + +  L  L  L+L  
Sbjct: 84  LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N         L  LTSL+ L   SN+     P  L     LE L +S+N +    I  +A
Sbjct: 139 NTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 192
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
            L NL S++ +        ++I DI    + + L+ L L G+ +    T  L    NL  
Sbjct: 193 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 243
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
           LDL+NN I    P S   L+ L  + L  N+++      I P      L  L L    L 
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 296
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
              P  + + K+L YL L ++ I+   P    SS +++  L   +N     + +L N   
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL-FFYNNKVSDVSSLANLTN 350
Query: 511 LEVLSLGSNSFSGALPL 527
           +  LS G N  S   PL
Sbjct: 351 INWLSAGHNQISDLTPL 367

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 14/194 (7%)
Query: 127 NDFQGVQIPRFICSMGNLRYLNLSYT--QFVGMIPPQLGNLSNLQYLDLSWNFLYVENLW 184
           N F  V +P       +L +L+LS     F G         ++L+YLDLS+N +   +  
Sbjct: 339 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 185 WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT 244
           +L GL  L+ LD  + NL + S++  V  +L +L+ L +S               S+L  
Sbjct: 392 FL-GLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS 304
           L +  N F  +F+P+    L  L FLDL +   +   P    +L+SL+ L + SN+   S
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KS 508
Query: 305 IPNWLYRFNRLESL 318
           +P+ +  F+RL SL
Sbjct: 509 VPDGI--FDRLTSL 520

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 14/214 (6%)
Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN--NFQ 278
           L L  C+    P L + +   LT      N+  N+F       L  L FLDL RN  +F+
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362
Query: 279 GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN 338
           G   +     TSLK+L L  N   +   N+L    +LE L   +++L  + +   +   +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL--KQMSEFSVFLS 419
Query: 339 LRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDL 397
           LR+++   +  +        IF+G   S LE+L + G+S   + L     + +NL +LDL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMND 431
           S   +    P +   LS+LQ ++++ N+L  + D
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 135/317 (42%), Gaps = 37/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L  LV + ++  Q+  + PLA  N + LT L L  NQ  +    + +  L  L  L+L  
Sbjct: 84  LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N         L  LTSL+ L   SN+     P  L     LE L +S+N +    I  +A
Sbjct: 139 NTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 192
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
            L NL S++ +        ++I DI    + + L+ L L G+ +    T  L    NL  
Sbjct: 193 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 243
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
           LDL+NN I    P S   L+ L  + L  N+++      I P      L  L L    L 
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 296
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
              P  + + K+L YL L ++ I+   P    SS +++  L   +N     + +L N   
Sbjct: 297 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL-FFYNNKVSDVSSLANLTN 350
Query: 511 LEVLSLGSNSFSGALPL 527
           +  LS G N  S   PL
Sbjct: 351 INWLSAGHNQISDLTPL 367

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 128 DFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP 187
           D + VQ  ++   + N+RYL L   +   +    L  L+NL YL L+ N L         
Sbjct: 52  DIKSVQGIQY---LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD 106
Query: 188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDL 247
            L+ LK+L L    L    D   V + L +L  L L+  QL  LP       + LT LDL
Sbjct: 107 KLTNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 248 LYNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSI 305
            YNQ  +  +P  VF  L QL  L L +N  +  +P+G+   LTSL+++ L  N ++ + 
Sbjct: 165 SYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC 221
Query: 306 PNWLY 310
           P   Y
Sbjct: 222 PGIRY 226

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 137/319 (42%), Gaps = 42/319 (13%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L  LV + ++  Q+  + PLA  N + LT L L  NQ  +    + +  L  L  L+L  
Sbjct: 84  LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNW--LYRFNRLESLGVSNNSLQGRVIRS 332
           N         L  LTSL+ L      F + + +   L     LE L +S+N +    I  
Sbjct: 139 NTISDI--SALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189
Query: 333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNL 392
           +A L NL S++ +        ++I DI    + + L+ L L G+ +    T  L    NL
Sbjct: 190 LAKLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 240
Query: 393 YYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCH 448
             LDL+NN I    P S   L+ L  + L  N+++      I P      L  L L    
Sbjct: 241 TDLDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQ 293
Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
           L    P  + + K+L YL L ++ I+   P    SS +++  L  S N++   + +L N 
Sbjct: 294 LEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKV-SDVSSLANL 347
Query: 509 AQLEVLSLGSNSFSGALPL 527
             +  LS G N  S   PL
Sbjct: 348 TNINWLSAGHNQISDLTPL 366

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 13/187 (6%)
Query: 142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF--LKDLDLSY 199
            + + L+L   +   +       L+ L+ L L+ N L       LP   F  LK+L+  +
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-----LPAGIFKELKNLETLW 91
Query: 200 VNLSKASDW-LRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVP 258
           V  +K     + V + L +L +LRL R QL  LPP    + + LT L L YN+  +  +P
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LP 149
Query: 259 NWVFG-LIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLE 316
             VF  L  L  L L  N  +  +PEG    LT LK L LD+N+             +L+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 317 SLGVSNN 323
            L +  N
Sbjct: 209 MLQLQEN 215

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 136/317 (42%), Gaps = 38/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L  LV + ++  Q+  + PLA  N + LT L L  NQ  +    + +  L  L  L+L  
Sbjct: 88  LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 142
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N         L  LTSL+ L    N+     P  L     LE L +S+N +    I  +A
Sbjct: 143 NTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 195
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
            L NL S++ +        ++I DI    + + L+ L L G+ +    T  L    NL  
Sbjct: 196 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 246
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
           LDL+NN I    P S   L+ L  + L  N+++      I P      L  L L    L 
Sbjct: 247 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 299
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
              P  + + K+L YL L ++ I+   P    SS +++  L  + N++   + +L N   
Sbjct: 300 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVS-DVSSLANLTN 353
Query: 511 LEVLSLGSNSFSGALPL 527
           +  LS G N  S   PL
Sbjct: 354 INWLSAGHNQISDLTPL 370

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 127 NDFQGVQIPRFICSMGNLRYLNLSYT--QFVGMIPPQLGNLSNLQYLDLSWNFLYVENLW 184
           N F  V +P       +L +L+LS     F G         ++L+YLDLS+N +   +  
Sbjct: 339 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 185 WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT 244
           +L GL  L+ LD  + NL + S++  V  +L +L+ L +S               S+L  
Sbjct: 392 FL-GLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS 304
           L +  N F  +F+P+    L  L FLDL +   +   P    +L+SL+ L +  N F  S
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FS 508
Query: 305 IPNWLYR-FNRLESLGVSNNSL 325
           +  + Y+  N L+ L  S N +
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHI 530

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 14/207 (6%)
Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN--NFQ 278
           L L  C+    P L + +   LT      N+  N+F       L  L FLDL RN  +F+
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362
Query: 279 GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN 338
           G   +     TSLK+L L  N   +   N+L    +LE L   +++L  + +   +   +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL--KQMSEFSVFLS 419
Query: 339 LRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDL 397
           LR+++   +  +        IF+G   S LE+L + G+S   + L     + +NL +LDL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYN 424
           S   +    P +   LS+LQ +++S+N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHN 504

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 135/319 (42%), Gaps = 42/319 (13%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L  LV + ++  Q+  + PLA  N + LT L L  NQ  +    + +  L  L  L+L  
Sbjct: 84  LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 138
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNW--LYRFNRLESLGVSNNSLQGRVIRS 332
           N         L  LTSL+ L      F + + +   L     LE L +S+N +    I  
Sbjct: 139 NTISDI--SALSGLTSLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189
Query: 333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNL 392
           +A L NL S++ +        ++I DI    + + L+ L L G+ +    T  L    NL
Sbjct: 190 LAKLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNL 240
Query: 393 YYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCH 448
             LDL+NN I    P S   L+ L  + L  N+++      I P      L  L L    
Sbjct: 241 TDLDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQ 293
Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
           L    P  + + K+L YL L ++ I+   P    SS +++  L   +N     + +L N 
Sbjct: 294 LEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL-FFYNNKVSDVSSLANL 347
Query: 509 AQLEVLSLGSNSFSGALPL 527
             +  LS G N  S   PL
Sbjct: 348 TNINWLSAGHNQISDLTPL 366

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 166 SNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
           ++L+YLDLS+N +   +  +L GL  L+ LD  + NL + S++  V  +L +L+ L +S 
Sbjct: 78  TSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISH 135
Query: 226 CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGL 285
                         S+L  L +  N F  +F+P+    L  L FLDL +   +   P   
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 286 QNLTSLKHLLLDSNRFNSSIPNWLYR-FNRLESLGVSNNSL 325
            +L+SL+ L +  N F  S+  + Y+  N L+ L  S N +
Sbjct: 196 NSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHI 235

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 134/317 (42%), Gaps = 38/317 (11%)
Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L  LV + ++  Q+  + PLA  N + LT L L  NQ  +    + +  L  L  L+L  
Sbjct: 89  LTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSS 143
Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N         L  LTSL+ L    N+     P  L     LE L +S+N +    I  +A
Sbjct: 144 NTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 196
Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
            L NL S++ +        ++I DI    + + L+ L L G+ +    T  L    NL  
Sbjct: 197 KLTNLESLIATN-------NQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTD 247
Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLG 450
           LDL+NN I    P S   L+ L  + L  N+++      I P      L  L L    L 
Sbjct: 248 LDLANNQISNLAPLS--GLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLE 300
Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
              P  + + K+L YL L ++ I+   P    SS +++  L   +N     + +L N   
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRL-FFYNNKVSDVSSLANLTN 354
Query: 511 LEVLSLGSNSFSGALPL 527
           +  LS G N  S   PL
Sbjct: 355 INWLSAGHNQISDLTPL 371

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 13/202 (6%)
Query: 127 NDFQGVQIPRFICSMGNLRYLNLSYT--QFVGMIPPQLGNLSNLQYLDLSWNFLYVENLW 184
           N F  V +P       +L +L+LS     F G          +L+YLDLS+N +   +  
Sbjct: 363 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415
Query: 185 WLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTT 244
           +L GL  L+ LD  + NL + S++  V  +L +L+ L +S               S+L  
Sbjct: 416 FL-GLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473
Query: 245 LDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSS 304
           L +  N F  +F+P+    L  L FLDL +   +   P    +L+SL+ L +  N F  S
Sbjct: 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FS 532
Query: 305 IPNWLYR-FNRLESLGVSNNSL 325
           +  + Y+  N L+ L  S N +
Sbjct: 533 LDTFPYKCLNSLQVLDYSLNHI 554

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 14/207 (6%)
Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN--NFQ 278
           L L  C+    P L + +   LT      N+  N+F       L  L FLDL RN  +F+
Sbjct: 333 LELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 386
Query: 279 GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN 338
           G   +      SLK+L L  N   +   N+L    +LE L   +++L  + +   +   +
Sbjct: 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL--KQMSEFSVFLS 443
Query: 339 LRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDL 397
           LR+++   +  +        IF+G   S LE+L + G+S   + L     + +NL +LDL
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYN 424
           S   +    P +   LS+LQ +++S+N
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHN 528

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 130 QGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGL 189
           QG+Q       + N+RYL L   +   +    L  L+NL YL L+ N L          L
Sbjct: 57  QGIQY------LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 190 SFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLY 249
           + LK+L L    L    D   V + L +L  L L   QL  LP       + LT LDL  
Sbjct: 109 TNLKELVLVENQLQSLPDG--VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 250 NQFDNSFVPNWVFG-LIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPN 307
           NQ  +  +P  VF  L QL  L L  N  +  +P+G+   LTSL H+ L +N ++ +  +
Sbjct: 167 NQLQS--LPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSD 223
Query: 308 WLY 310
            LY
Sbjct: 224 ILY 226

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN+L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
            NL +++L 
Sbjct: 172 ENLDTLLLQ 180

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN+L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 337 CNLRSVML 344
            NL +++L
Sbjct: 172 ENLDTLLL 179

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN+L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
            NL +++L 
Sbjct: 172 ENLDTLLLQ 180

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
            NL +++L 
Sbjct: 172 ENLDTLLLQ 180

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
            NL +++L 
Sbjct: 172 ENLDTLLLQ 180

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
            NL +++L 
Sbjct: 172 ENLDTLLLQ 180

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 211 VTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVF 269
           V ++L +L +L L   QL  LP     + + LT LDL  NQ   + +P+ VF  L+ L  
Sbjct: 59  VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKE 116
Query: 270 LDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESL 318
           L +  N     +P G++ LT L HL LD N+   SIP+    F+RL SL
Sbjct: 117 LFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHG--AFDRLSSL 161

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN+L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 337 CNLRSVML 344
            NL +++L
Sbjct: 172 ENLDTLLL 179

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
            NL +++L 
Sbjct: 172 ENLDTLLLQ 180

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 26  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 79
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 80  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 115
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN+L       +  L
Sbjct: 116 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 172
Query: 337 CNLRSVML 344
            NL +++L
Sbjct: 173 ENLDTLLL 180

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 78/189 (41%), Gaps = 34/189 (17%)
Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +PP L   + +  L LS N LY  +L  L   + L  L+L    L+K    L+V  TLP 
Sbjct: 25  LPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK----LQVDGTLPV 78
Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS  QL  LP L       LT LD+ +N+  +                       
Sbjct: 79  LGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTS----------------------- 114
Query: 278 QGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
              +P G L+ L  L+ L L  N   +  P  L    +LE L ++NN L       +  L
Sbjct: 115 ---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGL 171
Query: 337 CNLRSVMLS 345
            NL +++L 
Sbjct: 172 ENLDTLLLQ 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	938
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-75
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  583 bits (1506), Expect = 0.0
 Identities = 224/879 (25%), Positives = 344/879 (39%), Gaps = 149/879 (16%)

Query: 23  SFSNGSSYHVGCLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVE 82
           SF    S     L  E   L+ FK  L D  N L  W   ++ C + GV C +    +  
Sbjct: 1   SFQASPS---QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRD--DKVTS 54

Query: 83  LNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMG 142
           ++L +             P ++    V+ SLL L  L  L LS +   G  +  F     
Sbjct: 55  IDLSS------------KPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSA 100

Query: 143 NLRYLNLSYTQFVGMIPP--QLGNLSNLQYLDLSWNFL-YVENLWWLPGLSFLKDLDLSY 199
           +L  L+LS     G +     LG+ S L++L++S N L +   +     L+ L+ LDLS 
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 200 VNLSKA-SDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVP 258
            ++S A      +++    L  L +S  ++     +                        
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV------------------------ 196

Query: 259 NWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESL 318
                 + L FLD+  NNF   IP  L + ++L+HL +  N+ +      +     L+ L
Sbjct: 197 ---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 319 GVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSV 378
            +S+N   G +      L +L+ + L+  K + EI +                       
Sbjct: 253 NISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFL--------------------- 289

Query: 379 SGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ 438
                   G    L  LDLS N   G +P   G  S L+ + LS N  +G     +P   
Sbjct: 290 -------SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE----LPM-- 336

Query: 439 LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498
                             L   + L  LDLS++  +G +P    + ++ +  LDLS N  
Sbjct: 337 ----------------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 499 HGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELK 558
            G I            +L  N  +         L EL   NN  +G I   +        
Sbjct: 381 SGPILP----------NLCQNPKN--------TLQELYLQNNGFTGKIPPTLS----NCS 418

Query: 559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
           +L  L+L  N+L G +     +   L  L L  N   G +P  L  + +L++L L  N+L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 619 SGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDL 677
           +G I   L NCT L  + +  N     IP WIG R   + +L L +N F   +P  L D 
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDC 537

Query: 678 AFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAP---------- 727
             L  +DL  N  +G +P  +      +  N  AGK   Y       +            
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 728 ----------STAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKA 777
                     ST         V  G  +        +  +D S N  SG IP E+ ++  
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

Query: 778 LQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837
           L   NL +N  +G IP+ +G +R L  +D S N+L G IPQ+MS+LT L  ++LSNNNL+
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

Query: 838 GKIPSSTQLQSFDASSYAGND-LCGAPLPRNCSEHVSTP 875
           G IP   Q ++F  + +  N  LCG PLPR    +    
Sbjct: 718 GPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGY 756

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  298 bits (765), Expect = 2e-89
 Identities = 151/741 (20%), Positives = 247/741 (33%), Gaps = 122/741 (16%)

Query: 119 LSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFL 178
               D S+      Q+P  + +  N+  LNL++ Q   +        S L  LD+ +N +
Sbjct: 6   HEVADCSHLKLT--QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 179 YVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIAN 238
                     L  LK L+L +  LS+ SD  +      +L +L L    +  +       
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 239 FSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQ--NLTSLKHLLL 296
              L TLDL +N   +S        L  L  L L  N  Q    E L     +SLK L L
Sbjct: 120 QKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA---SLCNLRSVMLSCVKLSQEI 353
            SN+     P   +   RL  L ++N  L   +   +    +  ++R++ LS  +LS   
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 354 SEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413
           +     F G   + L +L L  ++++            L Y  L  N+I      SL  L
Sbjct: 239 N---TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 414 STLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGI 473
             +++++L  +                   +    L           K L +L++  + I
Sbjct: 296 FNVRYLNLKRS--------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 474 TGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLI 533
            G   N+F +    +  L LS +                + +L + +F     L  S L 
Sbjct: 342 PGIKSNMF-TGLINLKYLSLSNSFT-------------SLRTLTNETFVS---LAHSPLH 384

Query: 534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELT-DCWMNYQNLMILDLSNN 592
            L+ + N IS             L  L+ L L  N +  ELT   W   +N+  + LS N
Sbjct: 385 ILNLTKNKISKIESDAF----SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 593 KFTGNLPISLGSLISLQSLHLRKNNLSGTIHS---LKNCTALLTLDVGENEFVENIPTWI 649
           K+      S   + SLQ L LR+  L     S    +    L  LD              
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD-------------- 486

Query: 650 GERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNS 709
                      L +N   ++    L  L  L+I+DL  NNL+               L  
Sbjct: 487 -----------LSNNNIANINDDMLEGLEKLEILDLQHNNLA--------------RLWK 521

Query: 710 HAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP 769
           HA       FL                              L+ + I++   N F     
Sbjct: 522 HANPGGPIYFLK----------------------------GLSHLHILNLESNGFDEIPV 553

Query: 770 LEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS-SLTYLNH 828
               +L  L+  +L  N              SL+S++   N ++    +    +   L  
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 829 LNLSNNNLTGKIPSSTQLQSF 849
           L++  N       S     ++
Sbjct: 614 LDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  283 bits (726), Expect = 7e-84
 Identities = 134/718 (18%), Positives = 231/718 (32%), Gaps = 137/718 (19%)

Query: 167 NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC 226
           + +  D S        L  +P                         +   ++  L L+  
Sbjct: 5   SHEVADCSHL-----KLTQVP------------------------DDLPTNITVLNLTHN 35

Query: 227 QLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQ 286
           QL  LP      +S LT+LD+ +N   +   P     L  L  L+L+ N       +   
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94

Query: 287 NLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC 346
             T+L  L L SN       N   +   L +L +S+N L    + +   L NL+ ++LS 
Sbjct: 95  FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 347 VKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPI 406
            K+    SE  DIF+                             +L  L+LS+N I    
Sbjct: 155 NKIQALKSEELDIFAN---------------------------SSLKKLELSSNQIKEFS 187

Query: 407 PFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLGSRFPSWLHS--Q 460
           P     +  L  + L+  +L       +        +  L L +  L +   +       
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSN 519
            +L  LDLSY+ +     + F +   Q+    L +N I     + L     +  L+L  +
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 520 SFSGALPLIS------------SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRG 567
               ++ L S              L  L+  +N I G   +        L  L++L L  
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG----LINLKYLSLSN 362

Query: 568 NFLQG----ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH 623
           +F         T   + +  L IL+L+ NK +     +   L  L+ L L  N +   + 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 624 --SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSL--LPKGLCDLAF 679
               +    +  + +  N++++            +  L+LR     ++   P     L  
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

Query: 680 LQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV 739
           L I+DL++NN++      +  L  +  L+                               
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILD------------------------------- 510

Query: 740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM 799
                      L    +    K+   G     +  L  L   NL +N F     E    +
Sbjct: 511 -----------LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 800 RSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS-----TQLQSFDAS 852
             L+ ID  LN L+       ++   L  LNL  N +T             L   D  
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  282 bits (723), Expect = 2e-83
 Identities = 125/607 (20%), Positives = 194/607 (31%), Gaps = 56/607 (9%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
               L  L  L+L +N+   +   +      NL  L+L       +         NL  L
Sbjct: 68  LCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           DLS N L    L     L  L++L LS   +              SL KL LS  Q+   
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPN--WVFGLIQLVFLDLRRNNFQGPIPEGLQNL- 288
            P        L  L L   Q   S             +  L L  +            L 
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 289 -TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV 347
            T+L  L L  N  N    +      +LE   +  N++Q     S+  L N+R + L   
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK-- 304

Query: 348 KLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIP 407
                                    +  +S+     +     K L +L++ +N I G   
Sbjct: 305 ------------------RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 408 FSLGHLSTLQFIDLSYNELNGMNDNW-----IPPFQLATLGLRHCHLGSRFPSWLHSQKH 462
                L  L+++ LS +  +           +    L  L L    +            H
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSF 521
           L  LDL  + I   +    W     I+ + LS+N+      N       L+ L L   + 
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 522 SGALPLIS-----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ----- 571
                  S      NL  LD SNN+I+      +      L+KL+ L L+ N L      
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE----GLEKLEILDLQHNNLARLWKH 522

Query: 572 ---GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKN 627
              G          +L IL+L +N F          L  L+ + L  NNL+        N
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 628 CTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD--LAFLQIVDL 685
             +L +L++ +N          G  F  +  L +R N F        C+    F+  ++ 
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD-----CTCESIAWFVNWINE 637

Query: 686 ADNNLSG 692
              N+  
Sbjct: 638 THTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  244 bits (624), Expect = 1e-69
 Identities = 116/652 (17%), Positives = 204/652 (31%), Gaps = 102/652 (15%)

Query: 241 TLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNR 300
           +    D  + +     VP+ +     +  L+L  N  +          + L  L +  N 
Sbjct: 5   SHEVADCSHLKLTQ--VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 301 FNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIF 360
            +   P    +   L+ L + +N L     ++ A   NL  + L    +        + F
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ---KIKNNPF 117

Query: 361 SGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG--PIPFSLGHLSTLQF 418
               +  L  L L  + +S        Q +NL  L LSNN I         +   S+L+ 
Sbjct: 118 VKQKN--LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 419 IDLSYNELNGMNDNWIPPF-QLATLGLRHCHLGSRFPSWL---HSQKHLNYLDLSYSGIT 474
           ++LS N++   +        +L  L L +  LG      L    +   +  L LS S ++
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 475 GSIPNIFWS-SASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGALPL----- 527
            +    F     + + +LDLS+N ++    +      QLE   L  N+            
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 528 -------ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMN 580
                  +  +  +   S  S+              LK L+ L +  N + G  ++ +  
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSF----QWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 581 YQNLMILDLSNNKFTGNLPISLG----SLISLQSLHLRKNNLSGTI-HSLKNCTALLTLD 635
             NL  L LSN+  +     +      +   L  L+L KN +S     +      L  LD
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 636 VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG--E 693
           +G NE  + +          +  + L  NK+  L       +  LQ + L    L     
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 694 VPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNL 753
            P     LR +  L                                              
Sbjct: 472 SPSPFQPLRNLTIL---------------------------------------------- 485

Query: 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNN--------FFTGRIPESIGAMRSLESI 805
               D S NN +      +  L+ L+  +L +N           G     +  +  L  +
Sbjct: 486 ----DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 806 DFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS----TQLQSFDASS 853
           +   N       +    L  L  ++L  NNL     S       L+S +   
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  236 bits (605), Expect = 4e-67
 Identities = 123/542 (22%), Positives = 193/542 (35%), Gaps = 39/542 (7%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPP--QLGNLSNLQ 169
             +  K+L  LDLS+N             + NL+ L LS  +   +      +   S+L+
Sbjct: 116 PFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 170 YLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK-ASDWLRVTNTLPSLVKLRLSRCQL 228
            L+LS N +   +      +  L  L L+ V L    ++ L +     S+  L LS  QL
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 229 HHLPPLAIAN--FSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQ 286
                       ++ LT LDL YN   N    +    L QL +  L  NN Q      L 
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 287 NLTSLKHLLLDSN---------RFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLC 337
            L ++++L L  +                        LE L + +N + G        L 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 338 NLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL 397
           NL+ + LS    S   +   + F     S L IL L  + +S   +       +L  LDL
Sbjct: 354 NLKYLSLSNSFTSL-RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 398 SNNSIVGPIPFS-LGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHCHLGS--RF 453
             N I   +       L  +  I LSYN+   +  N       L  L LR   L +    
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 454 PSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH---------GQIPN 504
           PS     ++L  LDLS + I     ++      ++ +LDL  N +          G I  
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDML-EGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 505 LTNAAQLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
           L   + L +L+L SN F      +      L  +D   N+++           +    L+
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF----NNQVSLK 587

Query: 562 FLYLRGNFLQG-ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG 620
            L L+ N +   E       ++NL  LD+  N F          +  +   H     LS 
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

Query: 621 TI 622
             
Sbjct: 648 HY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  203 bits (519), Expect = 2e-55
 Identities = 95/524 (18%), Positives = 175/524 (33%), Gaps = 59/524 (11%)

Query: 337 CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLD 396
            +      S +KL+Q   ++         + + +L L  + +         ++  L  LD
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP--------TNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 397 LSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI-PPFQLATLGLRHCHLGSRFPS 455
           +  N+I    P     L  L+ ++L +NEL+ ++D        L  L L    +     +
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 456 WLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN---LTNAAQLE 512
               QK+L  LDLS++G++ +           +  L LS N+I         +   + L+
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 513 VLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNF 569
            L L SN      P        L  L  +N  +  S+   +C        ++ L L  + 
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA-NTSIRNLSLSNSQ 233

Query: 570 LQG--ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLK 626
           L      T   + + NL +LDLS N        S   L  L+   L  NN+     HSL 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 627 NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA 686
               +  L++  +                     +       +       L  L+ +++ 
Sbjct: 294 GLFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 687 DNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAE 746
           DN++ G        L  +  L+      +   F    +    T + L             
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLS------LSNSFTSLRTLTNETFVSL------------- 378

Query: 747 YKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP-ESIGAMRSLESI 805
                + + I++ +KN  S       + L  L+  +L  N     +  +    + ++  I
Sbjct: 379 ---AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 806 DFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSF 849
             S N+       S + +  L  L L    L     S +  Q  
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (372), Expect = 1e-36
 Identities = 74/420 (17%), Positives = 127/420 (30%), Gaps = 67/420 (15%)

Query: 463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 522
               D S+  +T    ++  +    I VL+L+ NQ+                     +F+
Sbjct: 6   HEVADCSHLKLTQVPDDLPTN----ITVLNLTHNQLRRLPAA---------------NFT 46

Query: 523 GALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ 582
                  S L  LD   N+IS            +L  L+ L L+ N L       +    
Sbjct: 47  RY-----SQLTSLDVGFNTISKLEPELC----QKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEF 641
           NL  L L +N              +L +L L  N LS T   +      L  L +  N+ 
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 642 VENIPTWIGERFSRM-VVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHN 700
                  +    +     L L SN+     P     +  L  + L +  L   +   +  
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS 760
             A  ++ +           L  S +   +       + +           NL  ++D S
Sbjct: 218 ELANTSIRN-----------LSLSNS-QLSTTSNTTFLGL--------KWTNL-TMLDLS 256

Query: 761 KNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFS---------LNQ 811
            NN +         L  L+ F L  N        S+  + ++  ++           L  
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

Query: 812 LSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS----TQLQSFDASSYAGNDLCGAPLPRN 867
           L      S   L  L HLN+ +N++ G   +       L+    S    +      L   
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS---NSFTSLRTLTNE 373

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (281), Expect = 2e-25
 Identities = 59/332 (17%), Positives = 101/332 (30%), Gaps = 66/332 (19%)

Query: 529 SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILD 588
           + +    D S+  ++  +   +         +  L L  N L+      +  Y  L  LD
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDL------PTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 589 LSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPT 647
           +  N  +   P     L  L+ L+L+ N LS     +   CT L  L +  N   +    
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707
              +    ++ L L  N   S        L  LQ + L++N +       +         
Sbjct: 116 PFVK-QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA----- 169

Query: 708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK 767
                                                       + ++ ++ S N     
Sbjct: 170 -------------------------------------------NSSLKKLELSSNQIKEF 186

Query: 768 IPLEVTNLKALQSFNLSNNFFTGRIPESIG---AMRSLESIDFSLNQLSGEIPQSMSSL- 823
            P     +  L    L+N      + E +    A  S+ ++  S +QLS     +   L 
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 824 -TYLNHLNLSNNNLTGKIPSS----TQLQSFD 850
            T L  L+LS NNL      S     QL+ F 
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  257 bits (658), Expect = 5e-75
 Identities = 122/567 (21%), Positives = 185/567 (32%), Gaps = 56/567 (9%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF 177
               LDLS+N  + +       S   L+ L+LS  +   +      +LS+L  L L+ N 
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 178 LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIA 237
           +    L    GLS L+ L                                L  L    I 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVE--------------------------TNLASLENFPIG 121

Query: 238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK----H 293
           +  TL  L++ +N   +  +P +   L  L  LDL  N  Q      L+ L  +      
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 294 LLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIR-SMASLCNLRSVMLSCVKLSQE 352
           L L  N  N   P        L  L + NN     V++  +  L  L    L   +   E
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 353 I---SEIFDIFSGCVSSGLEILVLRGSSVS-GHLTYKLGQFKNLYYLDLSNNSIVGPIPF 408
                       G  +  +E   L         +        N+    L + +I     F
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 409 SLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATL-GLRHCHLGSRFPSWLHSQKHLNYLD 467
           S  +    Q ++L   +         P  +L +L  L                  L +LD
Sbjct: 301 S--YNFGWQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 468 LSYSGITGS-IPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALP 526
           LS +G++     +      + +  LDLSFN +     N     QLE L    ++      
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 527 LIS----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGEL-TDCWMNY 581
                   NLI LD S+     +           L  L+ L + GN  Q     D +   
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNG----LSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 582 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENE 640
           +NL  LDLS  +     P +  SL SLQ L++  NN         K   +L  LD   N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFH 667
            + +    +    S +  L L  N F 
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  243 bits (621), Expect = 6e-70
 Identities = 130/756 (17%), Positives = 229/756 (30%), Gaps = 171/756 (22%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
           P +  + +++Y      +F   +IP  +    + + L+LS+     +      +   LQ 
Sbjct: 2   PCVEVVPNITY-QCMELNFY--KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           LDLS        +  +   ++                      +L  L  L L+   +  
Sbjct: 57  LDLSRC-----EIQTIEDGAY---------------------QSLSHLSTLILTGNPIQS 90

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG-PIPEGLQNLT 289
           L   A +  S+L  L  +      S     +  L  L  L++  N  Q   +PE   NLT
Sbjct: 91  LALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKL 349
           +L+HL L SN+  S     L   +++  L +S +                    LS   +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD--------------------LSLNPM 189

Query: 350 SQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIP-F 408
           +      F                                  L+ L L NN     +   
Sbjct: 190 NFIQPGAFKEI------------------------------RLHKLTLRNNFDSLNVMKT 219

Query: 409 SLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATL-GLRHCHLGSRFPSWLHSQKHLNYLD 467
            +  L+ L+   L   E     +  +  F  + L GL +  +          +  L YLD
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGN--LEKFDKSALEGLCNLTI---------EEFRLAYLD 268

Query: 468 LSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPL 527
                I      +     + +    L    I  ++ + +     + L L +  F     L
Sbjct: 269 YYLDDIIDLFNCL-----TNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPTL 322

Query: 528 ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ--GELTDCWMNYQNLM 585
              +L  L F++N      F  +     +L  L+FL L  N L   G  +       +L 
Sbjct: 323 KLKSLKRLTFTSNKGGN-AFSEV-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 586 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENEFVE 643
            LDLS N     +  +   L  L+ L  + +NL          +   L+ LD+       
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 644 NIPTWIGERFSRMVVLILRSNKFH-SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR 702
                     S + VL +  N F  + LP    +L  L  +DL+   L    P   ++L 
Sbjct: 436 AFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 703 AMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKN 762
           ++  LN                                                   S N
Sbjct: 495 SLQVLN--------------------------------------------------MSHN 504

Query: 763 NFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM-RSLESIDFSLNQLSGEIPQS-- 819
           NF          L +LQ  + S N       + +     SL  ++ + N  +        
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 564

Query: 820 MSSLTYLNHLNLSNNNLTGKIPSS---TQLQSFDAS 852
           +  +     L +    +    PS      + S + +
Sbjct: 565 LQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  213 bits (544), Expect = 2e-59
 Identities = 103/553 (18%), Positives = 188/553 (33%), Gaps = 64/553 (11%)

Query: 105 LVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGM-IPPQLG 163
           +      +   L  L  L     +   +     I  +  L+ LN+++       +P    
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 164 NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRL 223
           NL+NL++LDLS N +       L  L  +  L+LS                      L L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS----------------------LDL 184

Query: 224 SRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG---- 279
           S   ++ + P A      L  L L  N    + +   + GL  L    L    F+     
Sbjct: 185 SLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 280 --PIPEGLQNLTSLKHLLLDSNRFNSS---IPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
                  L+ L +L          +     I +       + S  + + +++   ++  +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFS 301

Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYY 394
                + + L   K  Q  +               +  L  +S  G   +      +L +
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKL----------KSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 395 LDLSNNSI--VGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSR 452
           LDLS N +   G    S    ++L+++DLS+N +  M+ N++   QL  L  +H +L   
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 453 FP-SWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP--NLTNAA 509
              S   S ++L YLD+S++    +   IF +  S + VL ++ N           T   
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 510 QLEVLSLGSNSFSGALPLISSN---LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLR 566
            L  L L         P   ++   L  L+ S+N+               L  LQ L   
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY----KCLNSLQVLDYS 526

Query: 567 GNFLQGELTDCWMN-YQNLMILDLSNNKFTGNLPIS--LGSLISLQSLHLRKNNLSGTI- 622
            N +         +   +L  L+L+ N F         L  +   + L +    +     
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

Query: 623 HSLKNCTALLTLD 635
              +    +L+L+
Sbjct: 587 SDKQG-MPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (465), Expect = 6e-49
 Identities = 96/516 (18%), Positives = 167/516 (32%), Gaps = 66/516 (12%)

Query: 365 SSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN 424
               + L L  + +    +Y    F  L  LDLS   I      +   LS L  + L+ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 425 ELNGMNDNWI-PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWS 483
            +  +          L  L     +L S     +   K L  L+++++ I       ++S
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 484 SASQIYVLDLSFNQIHGQIPN-LTNAAQLEV----LSLGSNSFSGALPLI--SSNLIELD 536
           + + +  LDLS N+I       L    Q+ +    L L  N  +   P       L +L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 537 FSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE--LTDCWMNY-QNLMILDLSNNK 593
             NN  S ++          L  L+   L     + E  L     +  + L  L +   +
Sbjct: 207 LRNNFDSLNVMKTCI---QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 594 ------FTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPT 647
                 +  ++      L ++ S  L    +   +           L++   +F    PT
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKF-GQFPT 321

Query: 648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS--GEVPRCIHNLRAMV 705
                   +  L   SNK  +       DL  L+ +DL+ N LS  G   +      ++ 
Sbjct: 322 LK---LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 706 TLN-SHAG-KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNN 763
            L+ S  G   +   FL                              L  +  +DF  +N
Sbjct: 377 YLDLSFNGVITMSSNFL-----------------------------GLEQLEHLDFQHSN 407

Query: 764 FSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEI-PQSMS 821
                   V  +L+ L   ++S+             + SLE +  + N       P   +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 822 SLTYLNHLNLSNNNLTGKIPSS----TQLQSFDASS 853
            L  L  L+LS   L    P++    + LQ  + S 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.8 bits (200), Expect = 8e-16
 Identities = 41/286 (14%), Positives = 78/286 (27%), Gaps = 88/286 (30%)

Query: 577 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLD 635
           C     N+         F   +P +L    S ++L L  N L     +S  +   L  LD
Sbjct: 3   CVEVVPNI-TYQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 636 VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695
                                    L   +  ++       L+ L  + L  N +     
Sbjct: 59  -------------------------LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 696 RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVR 755
                L ++  L                                                
Sbjct: 94  GAFSGLSSLQKL------------------------------------------------ 105

Query: 756 IIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG-RIPESIGAMRSLESIDFSLNQLSG 814
                + N +      + +LK L+  N+++N     ++PE    + +LE +D S N++  
Sbjct: 106 --VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 815 EIPQSMSSLTYL----NHLNLSNNNLTGKIPSS---TQLQSFDASS 853
                +  L  +      L+LS N +    P +    +L      +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 6e-14
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 7/120 (5%)

Query: 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS 813
            + +D S N           +   LQ  +LS          +  ++  L ++  + N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 814 GEIPQSMSSLTYLNHLNLSNNNLTGKIPSS----TQLQSFDASSYAGNDLCGAPLPRNCS 869
                + S L+ L  L     NL             L+  + +    N +    LP   S
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFKLPEYFS 146

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  251 bits (644), Expect = 8e-73
 Identities = 89/721 (12%), Positives = 186/721 (25%), Gaps = 179/721 (24%)

Query: 140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY 199
           S G +  L+L      G +P  +G L+ L+ L L  +   V    + P            
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP------------ 126

Query: 200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPN 259
                          + + +     +    H     +         DL+ +         
Sbjct: 127 -------------KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD--------- 164

Query: 260 WVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLG 319
                       +  +  Q  I +  +       +   SN   + +   + R  +L    
Sbjct: 165 -----------CINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFY 212

Query: 320 VSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVS 379
           + N+      I       N                                     +   
Sbjct: 213 MGNSPFVAENICEAWENENSEY----------------------------------AQQY 238

Query: 380 GHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQL 439
                K    K+L  +++ N   +  +P  L  L  +Q I+++ N              L
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 440 ATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGI-TGSIPNIFWSSASQIYVLDLSFNQI 498
           A   +                + +  + + Y+ + T  +         ++ +L+  +NQ+
Sbjct: 299 ADAPV---------------GEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQL 342

Query: 499 HGQIPNLTNAAQLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISG-SIFHFICYRA 554
            G++P   +  +L  L+L  N  +         +  +  L F++N +             
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS-- 400

Query: 555 HELKKLQFLYLRGNFLQG-------ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 607
             +  +  +    N +          L        N+  ++LSNN+ +        +   
Sbjct: 401 --VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 608 LQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFH 667
           L S++L  N L+                      +++           +  + LR NK  
Sbjct: 459 LSSINLMGNMLTEI----------------PKNSLKDENENFK-NTYLLTSIDLRFNKLT 501

Query: 668 SLLPK-GLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRA 726
            L        L +L  +DL+ N+ S   P    N   +                      
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG------------------ 542

Query: 727 PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNN 786
                                     +    D   N    + P  +T   +L    + +N
Sbjct: 543 --------------------------IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 787 FFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQL 846
                + E I    ++  +D   N         +          L  +     I     L
Sbjct: 577 DIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCDAL 632

Query: 847 Q 847
            
Sbjct: 633 D 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  234 bits (599), Expect = 1e-66
 Identities = 85/667 (12%), Positives = 190/667 (28%), Gaps = 124/667 (18%)

Query: 53  SNRLASWIGYEDCCAWA---GVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKV 109
           +   A+W   ++   W    GV  ++  G +  L+L                     G+V
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG---------------FGASGRV 97

Query: 110 NPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQ 169
             ++  L  L  L L  +  +  +       +             +      +       
Sbjct: 98  PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157

Query: 170 YLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
           + DL  +      +   P    +K                  +       ++      + 
Sbjct: 158 FSDLIKD-----CINSDPQQKSIKKS----------------SRITLKDTQIGQLSNNIT 196

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
            +   A+   + L    +  + F                  +               NL 
Sbjct: 197 FVSK-AVMRLTKLRQFYMGNSPFVAE------NICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKL 349
            L  + + +    + +P +L     ++ + V+ N                          
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS---------------------G 288

Query: 350 SQEISEIFDIFSGCVSSGLEILVLRGSS-VSGHLTYKLGQFKNLYYLDLSNNSIVGPIPF 408
            Q   +   +    V   ++I+ +  ++  +  +   L + K L  L+   N + G +P 
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347

Query: 409 SLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDL 468
           + G    L  ++L+YN++       IP                   ++    + +  L  
Sbjct: 348 AFGSEIKLASLNLAYNQITE-----IP------------------ANFCGFTEQVENLSF 384

Query: 469 SYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--------LTNAAQLEVLSLGSNS 520
           +++ +          S S +  +D S+N+I                    +  ++L +N 
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 521 FSGALPLI---SSNLIELDFSNNSISG---SIFHFICYRAHELKKLQFLYLRGNFLQG-- 572
            S     +    S L  ++   N ++    +              L  + LR N L    
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 573 -ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR------KNNLSGTI-HS 624
            +     +    L+ +DLS N F+   P    +  +L+   +R       N         
Sbjct: 505 DDFRATTL--PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 625 LKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD 684
           +  C +L  L +G N+    +   I      + VL ++ N   S+    +C      +  
Sbjct: 562 ITLCPSLTQLQIGSNDI-RKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 685 LADNNLS 691
           L  +   
Sbjct: 618 LFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  213 bits (544), Expect = 4e-59
 Identities = 85/620 (13%), Positives = 170/620 (27%), Gaps = 116/620 (18%)

Query: 266 QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
           ++  L L      G +P+ +  LT L+ L L S+    +   +                 
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG---------------- 125

Query: 326 QGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYK 385
                     +    S                D       S L    +        +   
Sbjct: 126 -------PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 386 LGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLR 445
                    +   +N+I   +  ++  L+ L+   +  +                     
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE----NICEAWENENSE 233

Query: 446 HCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNL 505
           +            + K L  +++        +P                       +  L
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT---------------------FLKAL 272

Query: 506 TNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYL 565
                ++++++  N       L        D                     +K+Q +Y+
Sbjct: 273 PE---MQLINVACNRGISGEQLKDDWQALADAPV-----------------GEKIQIIYI 312

Query: 566 RGNFLQ-GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS 624
             N L+   +       + L +L+   N+  G LP + GS I L SL+L  N ++    +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN 371

Query: 625 L-KNCTALLTLDVGENEFVENIPTWIG-ERFSRMVVLILRSNKFHSL-------LPKGLC 675
                  +  L    N+  + IP     +  S M  +    N+  S+       L     
Sbjct: 372 FCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 676 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED 735
               +  ++L++N +S            + ++N            L  +       L E 
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSIN------------LMGNM------LTEI 472

Query: 736 ALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP--LEVTNLKALQSFNLSNNFFTGRIP 793
               +K     +K    L   ID   N  +  +      T L  L   +LS N F+   P
Sbjct: 473 PKNSLKDENENFKNTYLL-TSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FP 529

Query: 794 ESIGAMRSLESI------DFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS--TQ 845
                  +L+        D   N+   E P+ ++    L  L + +N++   +       
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPN 588

Query: 846 LQSFDASSYAGNDLCGAPLP 865
           +   D      N      L 
Sbjct: 589 ISVLDIK---DNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  204 bits (521), Expect = 5e-56
 Identities = 77/520 (14%), Positives = 154/520 (29%), Gaps = 101/520 (19%)

Query: 386 LGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP--FQLATLG 443
           L     +  L L      G +P ++G L+ L+ + L  +        + P       +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 444 LRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYV----LDLSFNQIH 499
            +         +++      ++ DL    I           +S+I +    +    N I 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 500 GQIPNLTNAAQLEVLSLGSNSFSGALPLIS----------------------SNLIELDF 537
                +    +L    +G++ F       +                       +L +++ 
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 538 SNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELTDCWM------NYQNLMILDL 589
            N      +  F+      L ++Q + +  N      +L D W         + + I+ +
Sbjct: 257 YNCPNLTKLPTFLK----ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 590 SNNKF-TGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTW 648
             N   T  +  SL  +  L  L    N L G + +  +   L +L++  N+    IP  
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIPAN 371

Query: 649 IGERFSRMVVLILRSNKFHSLLPK-GLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707
                 ++  L    NK   +        ++ +  +D + N +     +    L      
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK 767
             +                                           V  I+ S N  S  
Sbjct: 432 GIN-------------------------------------------VSSINLSNNQISKF 448

Query: 768 IPLEVTNLKALQSFNLSNNFFTG-------RIPESIGAMRSLESIDFSLNQLSGEIPQS- 819
                +    L S NL  N  T           E+      L SID   N+L+  +    
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDF 507

Query: 820 -MSSLTYLNHLNLSNNNLTGKIPSS----TQLQSFDASSY 854
             ++L YL  ++LS N+ +   P+     + L+ F   + 
Sbjct: 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  148 bits (375), Expect = 3e-37
 Identities = 50/383 (13%), Positives = 117/383 (30%), Gaps = 61/383 (15%)

Query: 475 GSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGALPLIS---- 529
           G+ P +  +S  ++  L L      G++P+ +    +LEVL+LGS+       L      
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 530 ---SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMI 586
               +  +          +   +      +   L    +  +  Q  +            
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPRE--DFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIP 646
           +   +N  T  +  ++  L  L+  ++  +           C A    +    +  +   
Sbjct: 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN----ICEAWENENSEYAQQYKTED 242

Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 706
                    +  + + +    + LP  L  L  +Q++++A N       +   + +A+  
Sbjct: 243 LKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALAD 300

Query: 707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNF-S 765
                                                      +   ++II    NN  +
Sbjct: 301 AP-----------------------------------------VGEKIQIIYIGYNNLKT 319

Query: 766 GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTY 825
             +   +  +K L       N   G    + G+   L S++ + NQ++            
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 826 LNHLNLSNNNLTGKIPSSTQLQS 848
           + +L+ ++N L   IP+    +S
Sbjct: 379 VENLSFAHNKLKY-IPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 5/99 (5%)

Query: 780 SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK 839
           +FN   + +  +   S+ +   +  +       SG +P ++  LT L  L L ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 840 IPSS-----TQLQSFDASSYAGNDLCGAPLPRNCSEHVS 873
                    +   S +             +  +  E  S
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  232 bits (594), Expect = 3e-66
 Identities = 94/585 (16%), Positives = 176/585 (30%), Gaps = 54/585 (9%)

Query: 122 LDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE 181
            +         +IP  + +  +   L  S+     +       L NL +LDL+       
Sbjct: 17  YNCENLGLN--EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC----- 67

Query: 182 NLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFST 241
            ++W+   +F                      +   L  L L+   L  +   A++    
Sbjct: 68  QIYWIHEDTF---------------------QSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 242 LTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRF 301
           L  L  +     +S     +     L  L L  N+              LK L   +N  
Sbjct: 107 LKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 302 NSSIPNWLYRFNRLE--SLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDI 359
           +      +    +    SL ++ N + G +          +S+       +Q +  IF  
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFG---GTQNLLVIFKG 221

Query: 360 FSGCVSSGLEILVLRGSSVSG--HLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQ 417
                   L +               ++     ++  ++L  +        +    S LQ
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 418 FIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSI 477
            +DL+   L+ +    +    L  L L      +       +   L +L +  +     +
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 478 PNIFWSSASQIYVLDLSFNQIHGQIPN---LTNAAQLEVLSLGSNSFSGALPLI---SSN 531
                 +   +  LDLS + I         L N + L+ L+L  N               
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 532 LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN 591
           L  LD +   +              L  L+ L L  + L       +     L  L+L  
Sbjct: 402 LELLDLAFTRLKVKDAQSPF---QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 592 NKFTGNLPISLGS---LISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPT 647
           N F         S   L  L+ L L   +LS    H+  +   +  +D+  N    +   
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG 692
            +     + + L L SN    +LP  L  L+  + ++L  N L  
Sbjct: 519 ALSH--LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  227 bits (580), Expect = 2e-64
 Identities = 99/531 (18%), Positives = 184/531 (34%), Gaps = 29/531 (5%)

Query: 110 NPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQ 169
           N +   L +L++LDL+      +       S   L  L L+    + M    L     L+
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 170 YLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
           +L      +   +   L     L+ L L   ++S     L        L  L      +H
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK--LPKGFPTEKLKVLDFQNNAIH 166

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQN-- 287
           +L    +++    T L L  N  D + +    F       L+         I +GL+N  
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 288 LTSLKHLLLDSNRFNSSIPNWLYRF--NRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
           + SL     +        P          +ES+ +  +        +      L+ + L+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGP 405
                  +SE+     G  +  L+ LVL  +            F +L +L +  N+    
Sbjct: 287 ATH----LSELPSGLVGLST--LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 406 I-PFSLGHLSTLQFIDLSYNELNGM---NDNWIPPFQLATLGLRHCHLGSRFPSWLHSQK 461
           +    L +L  L+ +DLS++++      N        L +L L +    S          
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNS 520
            L  LDL+++ +        + +   + VL+LS + +             L+ L+L  N 
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 521 FSGALPLIS------SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGEL 574
           F       +        L  L  S   +S    H        LK +  + L  N L    
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF----TSLKMMNHVDLSHNRLTSSS 516

Query: 575 TDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSL 625
            +   + + +  L+L++N  +  LP  L  L   ++++LR+N L  T  ++
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  220 bits (562), Expect = 7e-62
 Identities = 107/631 (16%), Positives = 188/631 (29%), Gaps = 99/631 (15%)

Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQG 279
                  L+ +P       ++   L+  +N      + N  F  LI L FLDL R     
Sbjct: 17  YNCENLGLNEIPG---TLPNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNL 339
              +  Q+   L  L+L +N         L     L+ L      +       + +   L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 340 RSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSN 399
            S+ L    +S                                       + L  LD  N
Sbjct: 132 ESLYLGSNHISSIKLPKG-----------------------------FPTEKLKVLDFQN 162

Query: 400 NSIVGPIPFSLGHLSTLQFI--DLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWL 457
           N+I       +  L     +  +L+ N++ G+           +L              L
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 458 HSQK--HLNYLDLSYSGITGSIPNIFWS-SASQIYVLDLSFNQIHGQIPN-LTNAAQLEV 513
            +     L              P +F       +  ++L  +       N     + L+ 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 514 LSLGSNSFSGALPLIS--SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ 571
           L L +   S     +   S L +L  S N                   L  L ++GN  +
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA----SNFPSLTHLSIKGNTKR 338

Query: 572 GELTDCWM-NYQNLMILDLSNNKFT--GNLPISLGSLISLQSLHLRKNNLSG-TIHSLKN 627
            EL    + N +NL  LDLS++         + L +L  LQSL+L  N        + K 
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 628 CTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLAD 687
           C  L  LD+              +    + VL L  +       +    L  LQ ++L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 688 NNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEY 747
           N+      +  ++L+ +  L                                        
Sbjct: 459 NHFPKGNIQKTNSLQTLGRL---------------------------------------- 478

Query: 748 KCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDF 807
                   I+  S  + S       T+LK +   +LS+N  T    E++  ++ +  ++ 
Sbjct: 479 -------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNL 530

Query: 808 SLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG 838
           + N +S  +P  +  L+    +NL  N L  
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  184 bits (469), Expect = 2e-49
 Identities = 93/589 (15%), Positives = 164/589 (27%), Gaps = 116/589 (19%)

Query: 267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
              L+   N            L +L  L L   +      +     +RL++L ++ N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 327 GRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKL 386
                +++    L+ +      +S                                    
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPL----------------------------- 125

Query: 387 GQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF---QLATLG 443
              K L  L L +N I             L+ +D   N ++ ++   +         +L 
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 444 LRHCHLGSRFPSWLHSQKHLNYLDLSYSGITG-SIPNIFWSSASQIYVLDLSFNQIHGQI 502
           L    +                L+   +         +  S+   +++            
Sbjct: 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE--- 241

Query: 503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQF 562
                        +    F G   L   ++  ++   +       +      H    LQ 
Sbjct: 242 ------------DISPAVFEG---LCEMSVESINLQKHYFFNISSNTF----HCFSGLQE 282

Query: 563 LYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI 622
           L L    L  EL    +    L  L LS NKF     IS  +  SL  L ++ N     +
Sbjct: 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 623 --HSLKNCTALLTLDVGEN--EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA 678
               L+N   L  LD+  +  E  +     +    S +  L L  N+  SL  +   +  
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 679 FLQIVDLADNNLSG-EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDAL 737
            L+++DLA   L   +      NL  +  L                              
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVL------------------------------ 430

Query: 738 VVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIG 797
                               + S +            L ALQ  NL  N F     +   
Sbjct: 431 --------------------NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 798 A---MRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS 843
           +   +  LE +  S   LS     + +SL  +NH++LS+N LT     +
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  164 bits (417), Expect = 1e-42
 Identities = 82/427 (19%), Positives = 142/427 (33%), Gaps = 67/427 (15%)

Query: 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFI-CSMGNLRYLNLSYTQFVGMIPPQLGNL 165
             + P   D      L+        V        ++ +L            + P     L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 166 S--NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRL 223
              +++ ++L  ++ +  +       S L++LDL+  +LS+    L     L +L KL L
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV---GLSTLKKLVL 308

Query: 224 SRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQ--GPI 281
           S  +  +L  ++ +NF +LT L +  N          +  L  L  LDL  ++ +     
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 282 PEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
              L+NL+ L+ L L  N   S          +LE L ++   L+     + +   NL  
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV--KDAQSPFQNL-- 424

Query: 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNS 401
                                                             L  L+LS++ 
Sbjct: 425 ------------------------------------------------HLLKVLNLSHSL 436

Query: 402 IVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ----LATLGLRHCHLGSRFPSWL 457
           +          L  LQ ++L  N     N       Q    L  L L  C L S      
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 458 HSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSL 516
            S K +N++DLS++ +T S              L+L+ N I   +P+ L   +Q   ++L
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI--YLNLASNHISIILPSLLPILSQQRTINL 554

Query: 517 GSNSFSG 523
             N    
Sbjct: 555 RQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (398), Expect = 2e-40
 Identities = 92/488 (18%), Positives = 159/488 (32%), Gaps = 84/488 (17%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHC 447
             +   L+ S N +      +   L  L F+DL+  ++  ++++      +L TL L   
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 448 HLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LT 506
            L     + L   K L +L    +GI+         +   +  L L  N I         
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHISSIKLPKGF 150

Query: 507 NAAQLEVLSLGSNSFSGALP-----LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
              +L+VL   +N+           L  +  + L+ + N I+G     I   A +    Q
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-----IEPGAFDSAVFQ 205

Query: 562 FLYLRGNFLQGELTDCWMN--YQNLMILDLSNNKFTGNLPISLGSL--ISLQSLHLRKNN 617
            L   G      +     N   Q+L +    +       P     L  +S++S++L+K+ 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 618 LSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD 676
                 ++    + L  LD                         L +     L P GL  
Sbjct: 266 FFNISSNTFHCFSGLQELD-------------------------LTATHLSEL-PSGLVG 299

Query: 677 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTL----NSHAGKAIQYQFLLYASRAPSTAML 732
           L+ L+ + L+ N           N  ++  L    N+   +                   
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL------------- 346

Query: 733 LEDALVVMKGRAAEYKCILNLVRIIDFSKNN--FSGKIPLEVTNLKALQSFNLSNNFFTG 790
                             L  +R +D S ++   S    L++ NL  LQS NLS N    
Sbjct: 347 ----------------ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 791 RIPESIGAMRSLESIDFSLNQLSGEIPQS-MSSLTYLNHLNLSNNNLTGKIPSS----TQ 845
              E+      LE +D +  +L  +  QS   +L  L  LNLS++ L             
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 846 LQSFDASS 853
           LQ  +   
Sbjct: 451 LQHLNLQG 458

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  127 bits (321), Expect = 1e-30
 Identities = 59/337 (17%), Positives = 112/337 (33%), Gaps = 10/337 (2%)

Query: 512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ 571
           +  +  +   +     + ++   L+FS N +              L  L FL L    + 
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFS----RLINLTFLDLTRCQIY 70

Query: 572 GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTA 630
               D + +   L  L L+ N        +L    +L+ L   +  +S      L N   
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIV--DLADN 688
           L +L +G N    +I    G    ++ VL  ++N  H L  + +  L     +  +L  N
Sbjct: 131 LESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 689 NLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAML-LEDALVVMKGRAAEY 747
           +++G  P    +              +     L  S   S  +   ED        A   
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 748 KCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDF 807
                 V  I+  K+ F             LQ  +L+    +  +P  +  + +L+ +  
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 808 SLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSST 844
           S N+       S S+   L HL++  N    ++ +  
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  228 bits (584), Expect = 7e-65
 Identities = 115/578 (19%), Positives = 197/578 (34%), Gaps = 36/578 (6%)

Query: 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLS 166
           G +NP +  + +++            ++P  I S  + + ++LS+     +      N S
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS--KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56

Query: 167 NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK-ASDWLRVTNTLPSLVKLRLSR 225
            LQ+LDLS   +         GL  L +L L+   +   +         L SL  L    
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS---GLTSLENLVAVE 113

Query: 226 CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGL 285
            +L  L    I    TL  L++ +N   +  +P +   L  LV +DL  N  Q      L
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 286 QNLTSLKHLL----LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIR-SMASLCNLR 340
           Q L     +     +  N     I +  ++  +L  L +  N     +++  + +L  L 
Sbjct: 174 QFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 341 SVMLSCVKLSQEISE---IFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL 397
              L   +   E +       I  G     ++   L  ++       K     N+  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWL 457
           +  SI       +      Q + +   +L       +P   L +L L        F    
Sbjct: 293 AGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLP--FLKSLTLTMNKGSISFKKVA 348

Query: 458 HSQKHLNYLDLSYSGITGSIPNIFWS-SASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSL 516
                L+YLDLS + ++ S    +     + +  LDLSFN       N     +L+ L  
Sbjct: 349 LPS--LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406

Query: 517 GSNSFSGALPLIS----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG 572
             ++        +      L+ LD S  +               L  L  L + GN  + 
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----LTSLNTLKMAGNSFKD 462

Query: 573 EL-TDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS-LKNCTA 630
              ++ + N  NL  LDLS  +          +L  LQ L++  NNL     S      +
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS 668
           L TLD   N   E     +      +    L +N    
Sbjct: 523 LSTLDCSFNRI-ETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (385), Expect = 1e-38
 Identities = 88/491 (17%), Positives = 147/491 (29%), Gaps = 65/491 (13%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ-LATLGLRHC 447
             +   +DLS N +     +S  + S LQ++DLS  E+  + D        L+ L L   
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 448 HLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--L 505
            + S  P        L  L    + +              +  L+++ N IH        
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 506 TNAAQLEVLSLGSNSFSG-------ALPLISSNLIELDFSNNSISGSIFHFICYRAHELK 558
           +N   L  + L  N            L       + LD S N I      FI  +A +  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-----FIQDQAFQGI 204

Query: 559 KLQFLYLRGNFLQGELT-DCWMNYQNLMILDLSNNKFTGNLPIS------LGSLISLQSL 611
           KL  L LRGNF    +   C  N   L +  L   +F     +       +  L  +   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 612 HLRKNNLSGT---IHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS 668
             R    +     I        +  + +               +  +   L +   +   
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQLKQ 321

Query: 669 LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS 728
                  DL FL+ + L  N  S  +      L ++  L+                    
Sbjct: 322 FPTL---DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLD-------------------- 356

Query: 729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFF 788
               L    +   G  +      N +R +D S N     +      L+ LQ  +  ++  
Sbjct: 357 ----LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411

Query: 789 TGRIPES-IGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS---- 843
                 S   ++  L  +D S      +       LT LN L ++ N+      S+    
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 844 -TQLQSFDASS 853
            T L   D S 
Sbjct: 472 TTNLTFLDLSK 482

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (302), Expect = 3e-28
 Identities = 84/426 (19%), Positives = 134/426 (31%), Gaps = 64/426 (15%)

Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAA 509
           S+ P  + S      +DLS++ +       F S+ S++  LDLS  +I            
Sbjct: 24  SKVPDDIPS--STKNIDLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLH 80

Query: 510 QLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLR 566
            L  L L  N      P      ++L  L      ++      I     +L  L+ L + 
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG----QLITLKKLNVA 136

Query: 567 GNFLQG-ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSL----ISLQSLHLRKNNLSGT 621
            NF+   +L   + N  NL+ +DLS N         L  L        SL +  N +   
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 622 IHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSL---------LPK 672
                    L  L +  N    NI     +  + + V  L   +F            + +
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 673 GLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAML 732
           GLCD+   +   L   N   +     H L  +  ++                        
Sbjct: 257 GLCDVTIDEF-RLTYTNDFSDDIVKFHCLANVSAMS------------------------ 291

Query: 733 LEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI 792
               L  +  +  E        + +   +            +L  L+S  L+ N  +  I
Sbjct: 292 ----LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--I 342

Query: 793 PESIGAMRSLESIDFSLNQLSGEIPQSMSSL--TYLNHLNLSNNNLT---GKIPSSTQLQ 847
                A+ SL  +D S N LS     S S L    L HL+LS N             +LQ
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402

Query: 848 SFDASS 853
             D   
Sbjct: 403 HLDFQH 408

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (282), Expect = 8e-26
 Identities = 68/392 (17%), Positives = 122/392 (31%), Gaps = 48/392 (12%)

Query: 466 LDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSG 523
                  ++  +P +I  S       +DLSFN +        +N ++L+ L L       
Sbjct: 16  YQCMDQKLS-KVPDDIPSS----TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 524 ALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMN 580
                     +L  L  + N I              L  L+ L      L    +     
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSF----SGLTSLENLVAVETKLASLESFPIGQ 126

Query: 581 YQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNLSG----TIHSLKNCTA-LLTL 634
              L  L++++N      LP    +L +L  + L  N +       +  L+      L+L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLC-DLAFLQIVDLADNNLSGE 693
           D+  N   + I     +    +  L LR N   S + K    +LA L +  L       E
Sbjct: 187 DMSLNPI-DFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 694 VPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNL 753
               I     M  L        +  +    S                      + C+ N+
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-----------------FHCLANV 287

Query: 754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS 813
              +  +  +       +V      QS ++               +  L+S+  ++N+ S
Sbjct: 288 -SAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGS 341

Query: 814 GEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQ 845
             I     +L  L++L+LS N L+     S  
Sbjct: 342 --ISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.1 bits (237), Expect = 3e-20
 Identities = 50/378 (13%), Positives = 94/378 (24%), Gaps = 70/378 (18%)

Query: 500 GQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKK 559
           G +                   S     I S+   +D S N +     +          +
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSF----SNFSE 57

Query: 560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
           LQ+L L    ++      W    +L  L L+ N      P S   L SL++L   +  L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 620 GTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA 678
                 +     L  L+V  N              + +V + L  N   ++    L  L 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 679 FLQIV----DLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLE 734
               V    D++ N +     +    ++                                
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIK-------------------------------- 205

Query: 735 DALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIP 793
                              +  +    N  S  I      NL  L    L    F     
Sbjct: 206 -------------------LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 794 ESIGAMRSLES--------IDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQ 845
             I     +E            +      +       L  ++ ++L+  ++   +    +
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPK 305

Query: 846 LQSFDASSYAGNDLCGAP 863
              + + S     L   P
Sbjct: 306 HFKWQSLSIIRCQLKQFP 323

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  219 bits (561), Expect = 9e-65
 Identities = 85/350 (24%), Positives = 134/350 (38%), Gaps = 64/350 (18%)

Query: 526 PLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELT--DCWMNYQN 583
             +SS L   D  N +  G +    C    +  ++  L L G  L           N   
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 584 LMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEF 641
           L  L +   N   G +P ++  L  L  L++   N+SG I   L     L+TLD   N  
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFL-QIVDLADNNLSGEVPRCIHN 700
              +P  I      +V +    N+    +P      + L   + ++ N L+G++P    N
Sbjct: 138 SGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS 760
           L                                                  NL  + D S
Sbjct: 197 L--------------------------------------------------NLAFV-DLS 205

Query: 761 KNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM 820
           +N   G   +   + K  Q  +L+ N     +   +G  ++L  +D   N++ G +PQ +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 821 SSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGND-LCGAPLPRNCS 869
           + L +L+ LN+S NNL G+IP    LQ FD S+YA N  LCG+PLP  C+
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (446), Expect = 5e-49
 Identities = 88/401 (21%), Positives = 141/401 (35%), Gaps = 127/401 (31%)

Query: 34  CLESERRALLRFKQDLQDPSNRLASWIGYEDCC--AWAGVVCDNVT--GHIVELNLRNPF 89
           C   +++ALL+ K+DL +P+  L+SW+   DCC   W GV+CD  T    +  L+L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 90  TYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLS-YNDFQGVQIPRFICSMGNLRYLN 148
              +L +    P          SL +L +L++L +   N+  G  IP  I  +  L YL 
Sbjct: 60  --LNLPKPYPIP---------SSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLY 107

Query: 149 LSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDW 208
           +++T   G IP  L  +  L  LD S+N L                              
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNAL------------------------------ 137

Query: 209 LRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLV 268
              + TLP                  +I++   L  +    N+  +  +P+      +L 
Sbjct: 138 ---SGTLPP-----------------SISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLF 176

Query: 269 -FLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327
             + + RN   G IP    NL +L  + L  N                + + ++ NSL  
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 328 RVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLG 387
                                   ++ +                              +G
Sbjct: 236 ------------------------DLGK------------------------------VG 241

Query: 388 QFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNG 428
             KNL  LDL NN I G +P  L  L  L  +++S+N L G
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (419), Expect = 2e-45
 Identities = 80/364 (21%), Positives = 132/364 (36%), Gaps = 81/364 (22%)

Query: 281 IPEGLQNLTSLKHLLLDS----NRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
           I + L N T+L   L  +      +   + +   +  R+ +L +S  +L        +SL
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSL 72

Query: 337 CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS-SVSGHLTYKLGQFKNLYYL 395
            NL                            L  L + G  ++ G +   + +   L+YL
Sbjct: 73  ANL--------------------------PYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 396 DLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPS 455
            +++ ++ G IP  L  + TL  +D SYN L+G                         P 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-----------------------TLPP 143

Query: 456 WLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLS 515
            + S  +L  +    + I+G+IP+ + S +     + +S N++ G+IP           +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP----------T 193

Query: 516 LGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELT 575
             +            NL  +D S N + G             K  Q ++L  N L  +L 
Sbjct: 194 FAN-----------LNLAFVDLSRNMLEGDASVLFG----SDKNTQKIHLAKNSLAFDLG 238

Query: 576 DCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLD 635
                 +NL  LDL NN+  G LP  L  L  L SL++  NNL G I    N        
Sbjct: 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

Query: 636 VGEN 639
              N
Sbjct: 298 YANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (394), Expect = 5e-42
 Identities = 76/289 (26%), Positives = 123/289 (42%), Gaps = 41/289 (14%)

Query: 386 LGQFKNLYYLDLSNNSIVG--PIPFSLGHLSTLQFIDLS-YNELNGMNDNWIPPFQLATL 442
             Q   +  LDLS  ++    PIP SL +L  L F+ +   N L G     IPP  +A L
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPP-AIAKL 100

Query: 443 GLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI 502
                               L+YL ++++ ++G+IP+ F S    +  LD S+N + G +
Sbjct: 101 ------------------TQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTL 141

Query: 503 P-NLTNAAQLEVLSLGSNSFSGALPL----ISSNLIELDFSNNSISGSIFHFICYRAHEL 557
           P ++++   L  ++   N  SGA+P      S     +  S N ++G I           
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---- 197

Query: 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 617
             L F+ L  N L+G+ +  + + +N   + L+ N    +L   +G   +L  L LR N 
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 618 LSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNK 665
           + GT+   L     L +L+V  N     IP   G    R  V    +NK
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  152 bits (387), Expect = 4e-41
 Identities = 66/317 (20%), Positives = 111/317 (35%), Gaps = 60/317 (18%)

Query: 215 LPSLVKLRLSRCQLH---HLPPLAIANFSTLTTLDLL-YNQFDNSFVPNWVFGLIQLVFL 270
              +  L LS   L     +P  ++AN   L  L +   N       P  +  L QL +L
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYL 106

Query: 271 DLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVI 330
            +   N  G IP+ L  + +L  L    N  + ++P  +     L  +    N + G + 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 331 RSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFK 390
            S  S   L                               + +  + ++G +        
Sbjct: 167 DSYGSFSKL----------------------------FTSMTISRNRLTGKIPPTFANL- 197

Query: 391 NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLG 450
           NL ++DLS N + G      G     Q I L+ N L       +    L+          
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD----LGKVGLS---------- 243

Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 510
                     K+LN LDL  + I G++P    +    ++ L++SFN + G+IP   N  +
Sbjct: 244 ----------KNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQGGNLQR 292

Query: 511 LEVLSLGSNSFSGALPL 527
            +V +  +N      PL
Sbjct: 293 FDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  142 bits (361), Expect = 1e-37
 Identities = 63/267 (23%), Positives = 110/267 (41%), Gaps = 23/267 (8%)

Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI---PNLTN 507
           +   SWL +       D       G + +   +   ++  LDLS   +        +L N
Sbjct: 22  TTLSSWLPT------TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLAN 74

Query: 508 AAQLEVLSL-GSNSFSGALPL-IS--SNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563
              L  L + G N+  G +P  I+  + L  L  ++ ++SG+I  F+     ++K L  L
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS----QIKTLVTL 130

Query: 564 YLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL-QSLHLRKNNLSGTI 622
               N L G L     +  NL+ +    N+ +G +P S GS   L  S+ + +N L+G I
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 623 -HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQ 681
             +  N   L  +D+  N    +     G        + L  N     L K +     L 
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247

Query: 682 IVDLADNNLSGEVPRCIHNLRAMVTLN 708
            +DL +N + G +P+ +  L+ + +LN
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLN 274

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             +   K+L+ LDL  N   G  +P+ +  +  L  LN+S+    G I PQ GNL     
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDV 295

Query: 171 LDLSWN 176
              + N
Sbjct: 296 SAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 767 KIPLEVTNLKALQSFN----LSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE--IPQSM 820
           +I  ++ N   L S+       N  + G + ++      + ++D S   L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 821 SSLTYLNHLNLSN-NNLTGKIPSS----TQLQSFDASSYAGNDLCG 861
           ++L YLN L +   NNL G IP +    TQL     +     ++ G
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---HTNVSG 115

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  227 bits (581), Expect = 1e-62
 Identities = 82/598 (13%), Positives = 180/598 (30%), Gaps = 76/598 (12%)

Query: 128 DFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP 187
           D  G Q    + + G +  L+L+     G +P  +G L+ L+ L    +     +     
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-----SETVSG 363

Query: 188 GLSFLKDLDLSYVNLSKASDWLRVTNT----LPSLVKLRLSRCQLHHLP---PLAIANFS 240
            L   ++L        K    +            L    L +  ++  P   P+   +  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 241 TLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNR 300
           +L    +       +F+   +  L +L  +    + F              +    D  +
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAK 478

Query: 301 FNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIF 360
              +          L  + + N     ++   +  L  L+S+ ++C +         D  
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW- 537

Query: 361 SGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG-PIPFSLGHLSTLQFI 419
                                L         +    +  N++   P   SL  +  L  +
Sbjct: 538 -------------------TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 420 DLSYNELNGMNDNWIPPF----QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITG 475
           D  +N++       +  F    +L  L L +  +      +      +  L  S++ +  
Sbjct: 579 DCVHNKVRH-----LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 476 SIPNIFWSSASQIYVLDLSFNQIHGQIPNLT------NAAQLEVLSLGSNSFSGALPLI- 528
                   S   +  +D S+N+I  +  N++             ++L  N        + 
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 529 --SSNLIELDFSNNSISG---SIFHFICYRAHELKKLQFLYLRGNFLQG---ELTDCWMN 580
              S +  +  SNN ++    +              L  + LR N L     +       
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT--T 751

Query: 581 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK------NNLSGTI-HSLKNCTALLT 633
              L  +D+S N F+   P    +   L++  +R       N +       +  C +L+ 
Sbjct: 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 634 LDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
           L +G N+    +   +     ++ +L +  N   S+    +C      +  L  +   
Sbjct: 811 LQIGSNDI-RKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  187 bits (476), Expect = 3e-49
 Identities = 90/623 (14%), Positives = 177/623 (28%), Gaps = 116/623 (18%)

Query: 266 QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
           ++  L L     +G +P+ +  LT LK L   ++    S   +       +      + +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 326 QGRVIR-SMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTY 384
           +    +  +     L    L    ++    E+  I      S                  
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRIS------------------ 424

Query: 385 KLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGL 444
                K+    +L+N   +  I  ++  L+ LQ I  + +                    
Sbjct: 425 ----LKDTQIGNLTNR--ITFISKAIQRLTKLQIIYFANSPFTYD----NIAVDWEDANS 474

Query: 445 RHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN 504
            +            + K L  ++L        +P+  +                     +
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY---------------------D 513

Query: 505 LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLY 564
           L     L+ L++  N              +L      ++               K+Q  Y
Sbjct: 514 LPE---LQSLNIACNRGIS--------AAQLKADWTRLADDEDT--------GPKIQIFY 554

Query: 565 LRGNFLQGELTDCWM-NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH 623
           +  N L+       +     L +LD  +NK   +L  + G+ + L  L L  N +     
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE 612

Query: 624 SL-KNCTALLTLDVGENEFVENIPTWIG-ERFSRMVVLILRSNKFHSLLPKGLCDLAF-- 679
                   +  L    N+  + IP     +    M  +    NK  S      C +    
Sbjct: 613 DFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 680 ---LQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDA 736
                 V L+ N +             + T+            L       S  ++    
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTII-----------L-------SNNLMTSIP 713

Query: 737 LVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP--LEVTNLKALQSFNLSNNFFTGRIPE 794
              +K +   YK    L   ID   N  +  +      T L  L + ++S N F+   P 
Sbjct: 714 ENSLKPKDGNYKNTYLL-TTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

Query: 795 SIGAMRSLESI------DFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS--TQL 846
                  L++       D   N++  + P  +++   L  L + +N++  K+      QL
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQL 829

Query: 847 QSFDASSYAGNDLCGAPLPRNCS 869
              D +    N      +   C 
Sbjct: 830 YILDIA---DNPNISIDVTSVCP 849

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  186 bits (474), Expect = 7e-49
 Identities = 75/523 (14%), Positives = 150/523 (28%), Gaps = 109/523 (20%)

Query: 385 KLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG- 443
            L     +  L L+     G +P ++G L+ L+ +    +        +        +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 444 -LRHCHLGSRFPSWLHSQKHLNYLDLSYSGIT-----GSIPNIFWSSASQIYVLDLSFNQ 497
             +H         +L   + LN  DL    I        I      S     + +L+ N+
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NR 436

Query: 498 IHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS----------------------SNLIEL 535
           I      +    +L+++   ++ F+     +                        +L ++
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 536 DFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG---------ELTDCWMNYQNLMI 586
           +  N      +  F+     +L +LQ L +  N              L D       + I
Sbjct: 497 ELYNCPNMTQLPDFLY----DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 587 LDLSNNKFTGNLPIS--LGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVEN 644
             +  N      P S  L  ++ L  L    N +   + +      L  L +  N+  E 
Sbjct: 553 FYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EE 609

Query: 645 IPTWIGERFSRMVVLILRSNKFHSLLPK-GLCDLAFLQIVDLADNNLSGEVPRCIHNLRA 703
           IP        ++  L    NK   +        +  +  VD + N +  E      ++  
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 704 MVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNN 763
              +N                                                +  S N 
Sbjct: 670 YKGIN---------------------------------------------ASTVTLSYNE 684

Query: 764 FSGKIPLEVTNLKALQSFNLSNNFFT-------GRIPESIGAMRSLESIDFSLNQLSGEI 816
                         + +  LSNN  T            +      L +ID   N+L+  +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743

Query: 817 PQSM--SSLTYLNHLNLSNNNLTGKIPSS----TQLQSFDASS 853
                 ++L YL+++++S N  +   P+     +QL++F    
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  129 bits (325), Expect = 1e-30
 Identities = 58/384 (15%), Positives = 119/384 (30%), Gaps = 63/384 (16%)

Query: 475 GSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGALPLISSNLI 533
           G  P +   +  ++  L L+     G++P+ +    +L+VLS G++S + +  L     +
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELT------DCWMNYQNLMIL 587
             D S         H+        ++L    L  + +           D  ++ ++  I 
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPT 647
           +L+N      +  ++  L  LQ ++   +  +               +    +  EN   
Sbjct: 432 NLTNR--ITFISKAIQRLTKLQIIYFANSPFTY----DNIAVDWEDANSDYAKQYENEEL 485

Query: 648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707
                   +  + L +    + LP  L DL  LQ +++A N       +   +   +   
Sbjct: 486 SWS-NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLADD 543

Query: 708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK 767
                                                         ++I     NN    
Sbjct: 544 EDT----------------------------------------GPKIQIFYMGYNNLEE- 562

Query: 768 IPLEVT--NLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM-SSLT 824
            P   +   +  L   +  +N       E+ G    L  +    NQ+  EIP+   +   
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619

Query: 825 YLNHLNLSNNNLTGKIPSSTQLQS 848
            +  L  S+N L   IP+    +S
Sbjct: 620 QVEGLGFSHNKLKY-IPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (281), Expect = 2e-25
 Identities = 46/355 (12%), Positives = 100/355 (28%), Gaps = 55/355 (15%)

Query: 512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ 571
           E L   +  +       + + +  +F+                    ++  L L G   +
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKEL--DMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 572 GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCT 629
           G + D       L +L    +  T +  +     ++      RK+ +        L    
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 630 ALLTLDVGENEFVEN-----IPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD 684
            L   D+ ++    N     I            +  L +N+   +  K +  L  LQI+ 
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRITFI-SKAIQRLTKLQIIY 454

Query: 685 LADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRA 744
            A++  +      +    A                              E +   +K   
Sbjct: 455 FANSPFTY-DNIAVDWEDANSDYAKQYE-------------------NEELSWSNLK--- 491

Query: 745 AEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG---------RIPES 795
                  +L   ++        ++P  + +L  LQS N++ N             R+ + 
Sbjct: 492 -------DL-TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 796 IGAMRSLESIDFSLNQLSGEIPQS--MSSLTYLNHLNLSNNNLTGKIPSSTQLQS 848
                 ++      N L  E P S  +  +  L  L+  +N +   + +      
Sbjct: 544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 11/100 (11%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS 821
           + +  +  +++ N   +   +L+     GR+P++IG +  L+ + F  +  +        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 822 SLTYLNHLNLSNNNLTGKIPSST--QLQSFDASSYAGNDL 859
                +      + +            Q  + S    + +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 1/102 (0%)

Query: 746 EYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESI 805
           +YK +  +   +D     +     +  T      +FN   + +  +    +     +  +
Sbjct: 270 DYKALKAIWEALDGKNWRYYS-GTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328

Query: 806 DFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQ 847
             +     G +P ++  LT L  L+   ++ T         +
Sbjct: 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  194 bits (494), Expect = 1e-51
 Identities = 115/570 (20%), Positives = 203/570 (35%), Gaps = 48/570 (8%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDL 173
            L     L LS+N  + V    F   +  L+ L L        I  +   NL NL+ LDL
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSF-PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
             + +Y  +     GL  L +L L +  LS A         L +L +L LS+ Q+  L  
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 234 -LAIANFSTLTTLDLLYNQF----DNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQN- 287
             +    ++L ++D   NQ     ++   P        L F  L  N+    +       
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEP---LQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 288 LTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV 347
           +   ++++L+    + +          ++  G  +N++      S+    ++        
Sbjct: 198 MNPFRNMVLEILDVSGN-------GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 348 KLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIP 407
            +  +  +  + F+G   S +  L L    V    +      K+L  L+L+ N I     
Sbjct: 251 NIK-DPDQ--NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307

Query: 408 FSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHCHLGSRFPSWLHSQKHLNYL 466
            +   L  LQ ++LSYN L  +  +      ++A + L+  H+           + L  L
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 467 DLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALP 526
           DL  + +T             I  + LS N++   +P +       ++ L  N       
Sbjct: 368 DLRDNALT------TIHFIPSIPDIFLSGNKLV-TLPKINL--TANLIHLSENRLENLDI 418

Query: 527 LIS----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC----- 577
           L       +L  L  + N  S            E   L+ L+L  N LQ           
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTP---SENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG 637
           +    +L +L L++N      P     L +L+ L L  N L+  +        L  LD+ 
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDIS 534

Query: 638 ENEFVENIPTWIGERFSRMVVLILRSNKFH 667
            N     +     + F  + VL +  NKF 
Sbjct: 535 RN----QLLAPNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  174 bits (443), Expect = 4e-45
 Identities = 122/751 (16%), Positives = 236/751 (31%), Gaps = 118/751 (15%)

Query: 195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN 254
               + NL++      V   L +  +L LS   +  +   +      L  L+L       
Sbjct: 9   AFYRFCNLTQ------VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 255 SFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSI--PNWLYRF 312
           +        L  L  LDL  +      P+  Q L  L  L L     + ++    +    
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 313 NRLESLGVSNNSLQG-RVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEIL 371
             L  L +S N ++   +  S   L +L+S+  S  ++        +             
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL----------- 171

Query: 372 VLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGH-LSTLQFIDLSYNELNGMN 430
                           Q K L +  L+ NS+   +    G  ++  + + L   +++G  
Sbjct: 172 ----------------QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 431 DNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSA-SQIY 489
                       G     +       L    H+      +  I     N F   A S + 
Sbjct: 216 WTVDIT------GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 490 VLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGALPLISS---NLIELDFSNNSISGS 545
            LDLS   +             L+VL+L  N  +           NL  L+ S N +   
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-- 327

Query: 546 IFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSL 605
                    + L K+ ++ L+ N +       +   + L  LDL +N  T     ++  +
Sbjct: 328 --ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFI 380

Query: 606 ISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNK 665
            S+  + L  N L  T+  +        + + EN        +   R   + +LIL  N+
Sbjct: 381 PSIPDIFLSGNKLV-TLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437

Query: 666 FHSLLPKGLC-DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYAS 724
           F S        +   L+ + L +N L       +                          
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW------------------------ 473

Query: 725 RAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLS 784
                                 ++ + +L +++  + N  +   P   ++L AL+  +L+
Sbjct: 474 --------------------DVFEGLSHL-QVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 785 NNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSST 844
           +N  T  +  +     +LE +D S NQL    P    SL+    L++++N    +   ST
Sbjct: 513 SNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLSV---LDITHNKFICECELST 567

Query: 845 -----QLQSFDASSYAGNDLCGAPLPRNCSEHVSTPEDENGDEDELDY--WLYVSIALGF 897
                   +   +    +  C  P   +     S   +   +E+ L    +    +    
Sbjct: 568 FINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVT 627

Query: 898 MGGFWCLIGPLLASRRWRYKYYNFLDRVGDR 928
           +  F   I  +   R + +  Y    R+  +
Sbjct: 628 LTLFLMTILTVTKFRGFCFICYKTAQRLVFK 658

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  156 bits (397), Expect = 2e-39
 Identities = 79/460 (17%), Positives = 148/460 (32%), Gaps = 56/460 (12%)

Query: 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFI-CSMGNLRYLNLSYTQFVGMIPPQLGNLS 166
            ++PS   L  L  +D S N    V            L + +L+       +    G   
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 167 N------LQYLDLSWNFLYVE------------NLWWLPGLSFLKDLDLSYVNLSKASDW 208
           N      L+ LD+S N   V+              + L     +      + N+      
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 209 LRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLV 268
                   S+  L LS   +  L          L  L+L YN+  N       +GL  L 
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQ 317

Query: 269 FLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGR 328
            L+L  N            L  + ++ L  N              +L++L + +N+    
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA---- 373

Query: 329 VIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG-HLTYKLG 387
            + ++  + ++  + LS  KL                    ++ L  + +    + Y L 
Sbjct: 374 -LTTIHFIPSIPDIFLSGNKLVTLPKINLT---------ANLIHLSENRLENLDILYFLL 423

Query: 388 QFKNLYYLDLSNNSIVG-PIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRH 446
           +  +L  L L+ N         +     +L+ + L  N L    +  +       L    
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL---- 479

Query: 447 CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLT 506
                          HL  L L+++ +  S+P   +S  + +  L L+ N++   + +  
Sbjct: 480 --------------SHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT-VLSHND 523

Query: 507 NAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSI 546
             A LE+L +  N      P +  +L  LD ++N      
Sbjct: 524 LPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICEC 563

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (283), Expect = 1e-25
 Identities = 81/422 (19%), Positives = 140/422 (33%), Gaps = 65/422 (15%)

Query: 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDL 173
           L    + +LDLS+     +   R   ++ +L+ LNL+Y +   +       L NLQ L+L
Sbjct: 263 LARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
           S+N L         GL  +  +DL   +++   D  +    L  L  L L    L  +  
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLRDNALTTIH- 378

Query: 234 LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG-PIPEGLQNLTSLK 292
                  ++  + L  N+       N          + L  N  +   I   L  +  L+
Sbjct: 379 ----FIPSIPDIFLSGNKLVTLPKINL-----TANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 293 HLLLDSNRFNSSIPNWL-YRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQ 351
            L+L+ NRF+S   +        LE L +  N LQ      +                  
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW---------------- 473

Query: 352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLG 411
                 D+F G                            +L  L L++N +    P    
Sbjct: 474 ------DVFEG--------------------------LSHLQVLYLNHNYLNSLPPGVFS 501

Query: 412 HLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
           HL+ L+ + L+ N L  ++ N +P   L  L +    L +  P    S   L+     + 
Sbjct: 502 HLTALRGLSLNSNRLTVLSHNDLPA-NLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560

Query: 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSN 531
                   I W + + + +       I+   P+  +   L  LS         L  +  +
Sbjct: 561 CECELSTFINWLNHTNVTIAGP-PADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFS 619

Query: 532 LI 533
           L 
Sbjct: 620 LF 621

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (265), Expect = 2e-23
 Identities = 81/412 (19%), Positives = 134/412 (32%), Gaps = 50/412 (12%)

Query: 464 NYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSF 521
                 +  +T  +P +     +    L LSFN I   +         QL++L LGS   
Sbjct: 7   RIAFYRFCNLT-QVPQVL----NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT 60

Query: 522 SGALPLIS----SNLIELDFSNNSISG---SIFHFICYRAHELKKLQFLYLRGNFLQGEL 574
              +   +     NL  LD  ++ I       F         L  L  L L    L   +
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-------LFHLFELRLYFCGLSDAV 113

Query: 575 --TDCWMNYQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNLS----GTIHSLKN 627
                + N + L  LDLS N+     L  S G L SL+S+    N +       +  L+ 
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173

Query: 628 CTALLTLDVGENEFVENIPTWIGE-----RFSRMVVLILRSNKFHSLLPKGLCD-LAFLQ 681
            T L    +  N     +    G+     R   + +L +  N +   +     + ++  Q
Sbjct: 174 KT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 682 IVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMK 741
              L   +         HN++     N+ AG A      L  S       L       +K
Sbjct: 233 AFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLK 290

Query: 742 GRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRS 801
                       +++++ + N  +         L  LQ  NLS N        +   +  
Sbjct: 291 D-----------LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 802 LESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASS 853
           +  ID   N ++    Q+   L  L  L+L +N LT  I     +     S 
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLSG 390

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 3e-13
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 12/173 (6%)

Query: 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQL----- 162
            +   LL + HL  L L+ N F      +      +L  L L           +L     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 163 GNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR 222
             LS+LQ L L+ N+L          L+ L+ L L+   L+     L   +   +L  L 
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT----VLSHNDLPANLEILD 532

Query: 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN 275
           +SR QL    P     F +L+ LD+ +N+F      +     +    + +   
Sbjct: 533 ISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  184 bits (470), Expect = 7e-50
 Identities = 105/533 (19%), Positives = 184/533 (34%), Gaps = 61/533 (11%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
           S      L  LDLS  + Q ++      S+ +L  L L+      +       LS+LQ L
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
                 L     + +  L  LK+L++++  +         +N L +L  L LS  ++  +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSI 164

Query: 232 PPLAIANFSTLT----TLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG-LQ 286
               +     +     +LDL  N    +F+    F  I+L  L LR N     + +  +Q
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 287 NLTSLKHLLLDSNRFNSSIPNWLYR-----FNRLESLGVSNNSLQG------RVIRSMAS 335
            L  L+   L    F +     L +        L +L +    L         +I     
Sbjct: 223 GLAGLEVHRLVLGEFRNE--GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 336 LCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYL 395
           L N+ S  L  V + +       +     + G + L L              + K+L  L
Sbjct: 281 LTNVSSFSLVSVTIER-------VKDFSYNFGWQHLELVNCKFGQF---PTLKLKSLKRL 330

Query: 396 DLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGM---NDNWIPPFQLATLGLRHCHLGSR 452
             ++N            L +L+F+DLS N L+     + +      L  L L    +   
Sbjct: 331 TFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-IT 387

Query: 453 FPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 512
             S     + L +LD  +S +        + S   +  LD+S                  
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------------- 434

Query: 513 VLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG 572
                +  F+G      S+L  L  + NS   +    I     EL+ L FL L    L+ 
Sbjct: 435 --VAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQ 484

Query: 573 ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSL 625
                + +  +L +L++++N+           L SLQ + L  N    +   +
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  177 bits (452), Expect = 2e-47
 Identities = 103/585 (17%), Positives = 190/585 (32%), Gaps = 82/585 (14%)

Query: 123 DLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVEN 182
                +F   +IP  +    + + L+LS+     +      +   LQ LDLS        
Sbjct: 13  QCMELNFY--KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----E 63

Query: 183 LWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTL 242
           +  +   ++                       L  L  L L+   +  L   A +  S+L
Sbjct: 64  IQTIEDGAYQS---------------------LSHLSTLILTGNPIQSLALGAFSGLSSL 102

Query: 243 TTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQ-GPIPEGLQNLTSLKHLLLDSNR 300
             L  +      + + N+    L  L  L++  N  Q   +PE   NLT+L+HL L SN+
Sbjct: 103 QKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 301 FNSSIPNWLYRFNRLE----SLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI 356
             S     L   +++     SL +S N +   +         L  + L     S  + + 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK- 218

Query: 357 FDIFSGCVSSGLEILVLRGSSVSGHLTYK-LGQFKNLYYLDLSNNSIVGPIPFSLGHLST 415
                G     +  LVL      G+L        + L  L +    +     +    +  
Sbjct: 219 -TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 416 LQ-FIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGIT 474
                ++S   L  +    +  F                 S+    +HL  ++  +    
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDF-----------------SYNFGWQHLELVNCKFGQFP 320

Query: 475 GSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS-----GALPLIS 529
                        +  L  + N+      +  +   LE L L  N  S           +
Sbjct: 321 TL-------KLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG-ELTDCWMNYQNLMILD 588
           ++L  LD S N +       +      L++L+ L  + + L+       +++ +NL+ LD
Sbjct: 373 TSLKYLDLSFNGVI-----TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 589 LSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI--HSLKNCTALLTLDVGENEFVENIP 646
           +S+             L SL+ L +  N+               L  LD+ + +  E + 
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLS 486

Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
                  S + VL + SN+  S+       L  LQ + L  N   
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (357), Expect = 3e-35
 Identities = 99/626 (15%), Positives = 179/626 (28%), Gaps = 142/626 (22%)

Query: 239 FSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLD 297
             +   LDL +N      + ++ F    +L  LDL R   Q       Q+L+ L  L+L 
Sbjct: 27  PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIF 357
            N   S         + L+ L                              L+   +   
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVET------------------------NLASLENFPI 120

Query: 358 DIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI-VGPIPFSLGHLSTL 416
                                           K L  L++++N I    +P    +L+ L
Sbjct: 121 G-----------------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 417 QFIDLSYNELNGMNDNWIPPFQ-----LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
           + +DLS N++  +    +           +L L    +          +  L+ L L  +
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNN 210

Query: 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSN 531
             + ++        + + V  L   +   +  NL             ++  G   L +  
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-GNLE--------KFDKSALEG---LCNLT 258

Query: 532 LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN 591
           + E   +           I    + L  +    L    ++      +        L+L N
Sbjct: 259 IEEFRLAYLDYYLDD---IIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVN 313

Query: 592 NKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVE-NIPTWIG 650
            KF          L SL+ L    N       S  +  +L  LD+  N        +   
Sbjct: 314 CKFGQ---FPTLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 651 ERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCI-HNLRAMVTLNS 709
              + +  L L  N   ++       L  L+ +D   +NL       +  +LR ++ L  
Sbjct: 370 FGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-- 426

Query: 710 HAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP 769
                                                           D S  +      
Sbjct: 427 ------------------------------------------------DISHTHTRVAFN 438

Query: 770 LEVTNLKALQSFNLSNNFFTGRI-PESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNH 828
                L +L+   ++ N F     P+    +R+L  +D S  QL    P + +SL+ L  
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 829 LNLSNNNLT----GKIPSSTQLQSFD 850
           LN+++N L     G     T LQ   
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  113 bits (285), Expect = 3e-26
 Identities = 81/415 (19%), Positives = 148/415 (35%), Gaps = 34/415 (8%)

Query: 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRY----LNLSYTQFVGMIPPQLG 163
           K+     +L +L +LDLS N  Q +     +  +  +      L+LS       I P   
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAF 197

Query: 164 NLSNLQYLDLSWNFLYVENLW-WLPGLSFLKDLDLSYVNLSKASDWLRVT-NTLPSLVKL 221
               L  L L  NF  +  +   + GL+ L+   L         +  +   + L  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 222 RLSRCQLHHLP------PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN 275
            +   +L +L              + +++  L+    +     ++ FG   L  ++ +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 276 NFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA- 334
            F          L SLK L   SN+  ++          LE L +S N L  +   S + 
Sbjct: 318 QFPT------LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 335 -SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG-HLTYKLGQFKNL 392
               +L+ + LS       +  +   F G     LE L  + S++            +NL
Sbjct: 370 FGTTSLKYLDLS----FNGVITMSSNFLGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 393 YYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF--QLATLGLRHCHLG 450
            YLD+S+             LS+L+ + ++ N         I      L  L L  C L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNL 505
              P+  +S   L  L+++ + +  S+P+  +   + +  + L  N      P +
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.6 bits (238), Expect = 2e-20
 Identities = 82/410 (20%), Positives = 134/410 (32%), Gaps = 46/410 (11%)

Query: 467 DLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGAL 525
                       N+ +S       LDLSFN +         +  +L+VL L        +
Sbjct: 13  QCMELNFYKIPDNLPFS----TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 526 PLIS----SNLIELDFSNNSISG---SIFHFICYRAHELKKLQFLYLRGNFLQGELTDCW 578
              +    S+L  L  + N I       F         L  LQ L      L        
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSG-------LSSLQKLVAVETNLASLENFPI 120

Query: 579 MNYQNLMILDLSNNKFT-GNLPISLGSLISLQSLHLRKNNLS----GTIHSLKNCTAL-L 632
            + + L  L++++N      LP    +L +L+ L L  N +       +  L     L L
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 633 TLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD-LAFLQIVDLA----- 686
           +LD+  N  +  I     +    +  L LR+N     + K     LA L++  L      
Sbjct: 181 SLDLSLN-PMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 687 -DNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAA 745
            + NL       +  L  +          + Y              +   +LV +     
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFR-LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 746 EYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESI 805
           +        + ++     F     L++ +LK L     ++N       E    + SLE +
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFSEV--DLPSLEFL 352

Query: 806 DFSLNQLS--GEIPQSMSSLTYLNHLNLSNNNLT---GKIPSSTQLQSFD 850
           D S N LS  G   QS    T L +L+LS N +           QL+  D
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 52/274 (18%), Positives = 87/274 (31%), Gaps = 62/274 (22%)

Query: 577 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALLTLD 635
           C     N+         F   +P +L    S ++L L  N L     +S  +   L  LD
Sbjct: 3   CVEVVPNI-TYQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 636 VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695
           +   E  + I     +  S +  LIL  N   SL       L+ LQ +   + NL+    
Sbjct: 59  LSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 696 RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVR 755
             I +L+ +  L                                                
Sbjct: 118 FPIGHLKTLKEL------------------------------------------------ 129

Query: 756 IIDFSKNNF-SGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLE----SIDFSLN 810
             + + N   S K+P   +NL  L+  +LS+N         +  +  +     S+D SLN
Sbjct: 130 --NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 811 QLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSST 844
            ++  I         L+ L L NN  +  +  + 
Sbjct: 188 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  176 bits (449), Expect = 3e-47
 Identities = 105/589 (17%), Positives = 183/589 (31%), Gaps = 109/589 (18%)

Query: 122 LDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE 181
            D     F    IP  + +   ++ L+LS+ +   +    L   +NLQ L L  +     
Sbjct: 10  CDGRSRSFT--SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS----- 60

Query: 182 NLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFST 241
            +  + G +F                       L SL  L LS   L  L        S+
Sbjct: 61  RINTIEGDAFYS---------------------LGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 242 LTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNR 300
           L  L+L+ N +    V +    L  L  L +        I       LTSL  L + +  
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 301 FNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIF 360
             +     L     +  L +  +     +      L ++R + L    L++       + 
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 361 SGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFID 420
                                   K   F+     D S N ++  +   +  LS ++F D
Sbjct: 220 EV------------------SSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDD 260

Query: 421 LSYNELNGMNDNWIPPFQ---------LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
            + N L   N +               +  L +   +L     +     + +  + +  S
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN----LTNAAQLEVLSLGSNSFSGALPL 527
            +   +P  F      +  LDLS N +  +             L+ L L  N    ++  
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQK 378

Query: 528 IS------SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNY 581
                    NL  LD S N+      H +       +K++FL L    ++  +  C    
Sbjct: 379 TGEILLTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP-- 430

Query: 582 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEF 641
           Q L +LD+SNN    +  + L  L   Q L++ +N L  T+        LL +       
Sbjct: 431 QTLEVLDVSNNNLD-SFSLFLPRL---QELYISRNKLK-TLPDASLFPVLLVMK------ 479

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690
                              +  N+  S+       L  LQ + L  N  
Sbjct: 480 -------------------ISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  174 bits (443), Expect = 2e-46
 Identities = 98/517 (18%), Positives = 178/517 (34%), Gaps = 50/517 (9%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF 177
            +  LDLS+N    +     + +  NL+ L L  ++   +      +L +L++LDLS N 
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 178 LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC-QLHHLPPLAI 236
           L   +  W   LS LK L+L               N L +L  LR+        +  +  
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDF 144

Query: 237 ANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLL 296
           A  ++L  L++       ++    +  +  +  L L  +     +      L+S+++L L
Sbjct: 145 AGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVK-------- 348
                     + L        +             S   L  L   +L   +        
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

Query: 349 -----LSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV 403
                 +   S++        +  +  L +    +   L+      + +  + + N+ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 404 GPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHL 463
                   HL +L+F+DLS N              +    L++      +PS       L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSEN-------------LMVEEYLKNSACKGAWPS-------L 363

Query: 464 NYLDLSYSGIT--GSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF 521
             L LS + +        I   +   +  LD+S N  H    +     ++  L+L S   
Sbjct: 364 QTLVLSQNHLRSMQKTGEIL-LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 522 SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNY 581
                 I   L  LD SNN++  S   F       L +LQ LY+  N L+  L D    +
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNLD-SFSLF-------LPRLQELYISRNKLK-TLPDAS-LF 472

Query: 582 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
             L+++ +S N+           L SLQ + L  N  
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (352), Expect = 1e-34
 Identities = 85/498 (17%), Positives = 184/498 (36%), Gaps = 59/498 (11%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRR 274
            +             +P       + + +LDL +N+   +++ +        L  L L+ 
Sbjct: 5   DASGVCDGRSRSFTSIPS---GLTAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKS 59

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSM- 333
           +       +   +L SL+HL L  N  +S   +W    + L+ L +  N  Q   + S+ 
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLY 393
            +L NL+++ +  V+   EI      F+G  S  L  L ++  S+  + +  L   ++++
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRR--IDFAGLTS--LNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 394 YLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRF 453
           +L L  +     +      LS++++++L    L     + +P  ++++            
Sbjct: 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM---------- 225

Query: 454 PSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEV 513
                + +     D S++ +   +  I   S  ++   D + N +             + 
Sbjct: 226 --KKLAFRGSVLTDESFNELLKLLRYILELS--EVEFDDCTLNGL------------GDF 269

Query: 514 LSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE 573
               S+  S    + +  +  L      +   +          L+K++ + +  + +   
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS----LLEKVKRITVENSKVFLV 325

Query: 574 LTDCWMNYQNLMILDLSNNKFTGNL---PISLGSLISLQSLHLRKNNLS---GTIHSLKN 627
                 + ++L  LDLS N             G+  SLQ+L L +N+L     T   L  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 628 CTALLTLDVGENEFVENIPTWIGERFS---RMVVLILRSNKFHSLLPKGLCDLAFLQIVD 684
              L +LD+  N F       + +      +M  L L S     +     C    L+++D
Sbjct: 386 LKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIRVVKT---CIPQTLEVLD 437

Query: 685 LADNNLSGEVPRCIHNLR 702
           +++NNL       +  L+
Sbjct: 438 VSNNNLD-SFSLFLPRLQ 454

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  118 bits (298), Expect = 6e-28
 Identities = 76/486 (15%), Positives = 150/486 (30%), Gaps = 62/486 (12%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHC 447
              +  LDLS N I       L   + LQ + L  + +N +  +       L  L L   
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 448 HLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLT- 506
           HL S   SW      L YL+L  +          + + + +  L +   +   +I  +  
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 507 -NAAQLEVLSLGSNSFS----GALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
                L  L + + S       +L  I  ++  L    +  +  +          ++ L+
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSESA-FLLEIFADILSSVRYLE 202

Query: 562 FLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFT----GNLPISLGSLISLQSLHLRKNN 617
                    Q            +  L    +  T      L   L  ++ L  +      
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 618 LSGTIHSLKN------------CTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNK 665
           L+G      +               +  L + +        + +     ++  + + ++K
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSK 321

Query: 666 FHSLLPKGLCDLAFLQIVDLADNNLSGEV---PRCIHNLRAMVTLNSHAGKAIQYQFLLY 722
              +       L  L+ +DL++N +  E      C     ++ TL               
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV-------------- 367

Query: 723 ASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFN 782
                    L ++ L  M+        + NL   +D S+N F   +P      + ++  N
Sbjct: 368 ---------LSQNHLRSMQKTGEILLTLKNL-TSLDISRNTFH-PMPDSCQWPEKMRFLN 416

Query: 783 LSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS 842
           LS+      +       ++LE +D S N L       +  L     L +S N L   +P 
Sbjct: 417 LSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLK-TLPD 468

Query: 843 STQLQS 848
           ++    
Sbjct: 469 ASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (267), Expect = 4e-24
 Identities = 67/457 (14%), Positives = 147/457 (32%), Gaps = 57/457 (12%)

Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHCHLGSRF 453
            D  + S    IP  L   + ++ +DLS+N++  +    +     L  L L+   + +  
Sbjct: 10  CDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 454 PSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQL 511
               +S   L +LDLS + ++ S+ + ++   S +  L+L  N            N   L
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 512 EVLSLGSNSFSGALPLIS----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRG 567
           + L +G+      +  I     ++L EL+    S+     ++       ++ +  L L  
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR----NYQSQSLKSIRDIHHLTLHL 181

Query: 568 NFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN-NLSGTIHSLK 626
           +     L        ++  L+L +          L        +          T  S  
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 627 NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA 686
               LL        ++  +     +  +   +     ++   +   G  +   ++ + + 
Sbjct: 242 ELLKLL-------RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 687 DNNLSGEVPRCIHNLRAMVTLN-SHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAA 745
              L  ++      L  +  +   ++      +  L                        
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENS------KVFLVPCSFSQH---------------- 332

Query: 746 EYKCILNLVRIIDFSKNNFSGKI---PLEVTNLKALQSFNLSNNFFT--GRIPESIGAMR 800
                L  +  +D S+N    +            +LQ+  LS N      +  E +  ++
Sbjct: 333 -----LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 801 SLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837
           +L S+D S N     +P S      +  LNLS+  + 
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.1 bits (159), Expect = 6e-11
 Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 57/256 (22%)

Query: 586 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALLTLDVGENEFVEN 644
           + D  +  FT ++P  L    +++SL L  N ++      L+ C  L  L +  +     
Sbjct: 9   VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NT 64

Query: 645 IPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG-EVPRCIHNLRA 703
           I          +  L L  N   SL       L+ L+ ++L  N      V     NL  
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 704 MVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNN 763
           + TL                                                        
Sbjct: 125 LQTL--------------------------------------------------RIGNVE 134

Query: 764 FSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSS 822
              +I       L +L    +          +S+ ++R +  +   L++ +  +      
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194

Query: 823 LTYLNHLNLSNNNLTG 838
           L+ + +L L + NL  
Sbjct: 195 LSSVRYLELRDTNLAR 210

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  160 bits (406), Expect = 4e-42
 Identities = 93/461 (20%), Positives = 178/461 (38%), Gaps = 56/461 (12%)

Query: 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTL 245
              L+      L   N++           L  +  L+  R  +  +    +   + LT +
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQI 73

Query: 246 DLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSI 305
           +   NQ  +  +   +  L +LV + +  N      P  L NLT+L  L L +N+     
Sbjct: 74  NFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 306 PNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVS 365
           P  L     L  L +S+N++    I +++ L +L+ +         +++++  + +   +
Sbjct: 129 P--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN-----QVTDLKPL-ANLTT 178

Query: 366 SGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNE 425
             LE L +  + VS      L +  NL  L  +NN I    P  LG L+ L  + L+ N+
Sbjct: 179 --LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232

Query: 426 LNGMNDNWIPPF----QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIF 481
           L       I        L  L L +  + +   + L     L  L L  + I+   P   
Sbjct: 233 LKD-----IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--- 282

Query: 482 WSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNN 540
            +  + +  L+L+ NQ+   I  ++N   L  L+L  N+ S   P+ S + L  L F NN
Sbjct: 283 LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341

Query: 541 SISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELTDCWMNYQNLMILDLSNNKFTGNL 598
            +S      +      L  + +L    N +     L +       +  L L++  +T N 
Sbjct: 342 KVSD--VSSLA----NLTNINWLSAGHNQISDLTPLANL----TRITQLGLNDQAWT-NA 390

Query: 599 PISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
           P++  + +S+ +             ++ +  +    D+  N
Sbjct: 391 PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  153 bits (389), Expect = 6e-40
 Identities = 100/514 (19%), Positives = 186/514 (36%), Gaps = 95/514 (18%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            S  DL  ++ L        G++    +  + NL  +N S  Q   + P  L NL+ L  
Sbjct: 40  VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           + ++ N +   ++  L  L+ L  L L    ++           L +L +L LS   +  
Sbjct: 95  ILMNNNQI--ADITPLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISD 148

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           +  L  +  ++L  L       D   + N    L  L  LD+  N         L  LT+
Sbjct: 149 ISAL--SGLTSLQQLSFGNQVTDLKPLAN----LTTLERLDISSNKVSD--ISVLAKLTN 200

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLS 350
           L+ L+  +N+ +   P  L     L+ L ++ N L+   I ++ASL NL  + L+    +
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA----N 252

Query: 351 QEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL 410
            +IS +                             L     L  L L  N I    P  L
Sbjct: 253 NQISNLAP---------------------------LSGLTKLTELKLGANQISNISP--L 283

Query: 411 GHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSY 470
             L+ L  ++L+ N+L       I P                      + K+L YL L +
Sbjct: 284 AGLTALTNLELNENQLED-----ISPIS--------------------NLKNLTYLTLYF 318

Query: 471 SGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS- 529
           + I+   P    SS +++  L    N++   + +L N   +  LS G N  S   PL + 
Sbjct: 319 NNISDISP---VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHNQISDLTPLANL 374

Query: 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM-NYQNLMILD 588
           + + +L  ++ + + +  ++          +       N     +    + +  +    D
Sbjct: 375 TRITQLGLNDQAWTNAPVNY-------KANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

Query: 589 LSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI 622
           ++ N  +    +S  +     ++       SGT+
Sbjct: 428 ITWNLPSYTNEVSY-TFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (346), Expect = 2e-34
 Identities = 105/560 (18%), Positives = 173/560 (30%), Gaps = 144/560 (25%)

Query: 283 EGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
                L      +L       ++       +++ +L      ++   I  +  L NL  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQI 73

Query: 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI 402
             S  +L+ +I+                               L     L  + ++NN I
Sbjct: 74  NFSNNQLT-DITP------------------------------LKNLTKLVDILMNNNQI 102

Query: 403 VGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKH 462
               P  L +L+ L  + L  N++       I P +                    +  +
Sbjct: 103 ADITP--LANLTNLTGLTLFNNQITD-----IDPLK--------------------NLTN 135

Query: 463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 522
           LN L+LS + I+  I  +  S  + +  L          +  L N   LE L + SN  S
Sbjct: 136 LNRLELSSNTIS-DISAL--SGLTSLQQLSFGNQVTD--LKPLANLTTLERLDISSNKVS 190

Query: 523 GALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELTDCWM 579
               L   +NL  L  +NN IS             L  L  L L GN L+    L     
Sbjct: 191 DISVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIGTLASL-- 242

Query: 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
              NL  LDL+NN+ +      L  L  L  L L  N +S  I  L   TAL  L++ EN
Sbjct: 243 --TNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNEN 297

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH 699
           +  +  P         +  L L  N    + P  +  L  LQ +   +N +S      + 
Sbjct: 298 QLEDISPI---SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 700 NLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759
           NL  +  L                                                    
Sbjct: 351 NLTNINWL--------------------------------------------------SA 360

Query: 760 SKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS 819
             N  S   PL   NL  +    L++  +T   P +  A  S+ +   ++       P +
Sbjct: 361 GHNQISDLTPLA--NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAPAT 416

Query: 820 MSSLTYLNHLNLSNNNLTGK 839
           +S        +++ N  +  
Sbjct: 417 ISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (330), Expect = 2e-32
 Identities = 84/421 (19%), Positives = 166/421 (39%), Gaps = 48/421 (11%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             L +L  L  + ++ N    +     + ++ NL  L L   Q   + P  L NL+NL  
Sbjct: 84  TPLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 138

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L+LS N +   ++  L GL+ L+ L      ++           L +L +L +S  ++  
Sbjct: 139 LELSSNTI--SDISALSGLTSLQQLSFGN-QVTDLKP----LANLTTLERLDISSNKVSD 191

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           +  L  A  + L +L    NQ  +  +   +  L  L  L L  N  +      L +LT+
Sbjct: 192 ISVL--AKLTNLESLIATNNQISD--ITP-LGILTNLDELSLNGNQLKD--IGTLASLTN 244

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLS 350
           L  L L +N+ ++  P  L    +L  L +  N +    I  +A L  L ++ L+  +L 
Sbjct: 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLE 300

Query: 351 QEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL 410
            +IS I ++        L  L L  +++S      +     L  L   NN +       L
Sbjct: 301 -DISPISNL------KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--L 349

Query: 411 GHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLGSRFPSWLHSQKHLNYL 466
            +L+ + ++   +N+++      + P     ++  LGL      +   ++     +++  
Sbjct: 350 ANLTNINWLSAGHNQISD-----LTPLANLTRITQLGLNDQAWTNAPVNYK---ANVSIP 401

Query: 467 DLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLT-NAAQLEVLSLGSNSFSGAL 525
           +   +     I     S        D+++N        ++   +Q   +  G+ +FSG +
Sbjct: 402 NTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTV 460

Query: 526 P 526
            
Sbjct: 461 T 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  112 bits (283), Expect = 2e-26
 Identities = 82/396 (20%), Positives = 137/396 (34%), Gaps = 82/396 (20%)

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
                  L  + +T ++     +   Q+  L      I   I  +     L  ++  +N 
Sbjct: 24  AEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQ 79

Query: 521 FSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM 579
            +   PL + + L+++  +NN I+  I          L  L  L L  N +         
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIA-DITPL-----ANLTNLTGLTLFNNQITDIDPLK-- 131

Query: 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
           N  NL  L+LS+N  +     +L  L SLQ L    N ++  +  L N T L  LD+  N
Sbjct: 132 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTD-LKPLANLTTLERLDISSN 187

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH 699
           + V +I      + + +  LI  +N+   + P  L  L  L  + L  N L       I 
Sbjct: 188 K-VSDISVL--AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-----IG 237

Query: 700 NLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759
            L ++  L                                                 +D 
Sbjct: 238 TLASLTNL-----------------------------------------------TDLDL 250

Query: 760 SKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS 819
           + N  S   PL    L  L    L  N  +      +  + +L +++ + NQL    P  
Sbjct: 251 ANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP-- 304

Query: 820 MSSLTYLNHLNLSNNNLTGKIPSS--TQLQSFDASS 853
           +S+L  L +L L  NN++   P S  T+LQ     +
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.6 bits (223), Expect = 9e-19
 Identities = 70/366 (19%), Positives = 112/366 (30%), Gaps = 105/366 (28%)

Query: 493 LSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFIC 551
                I  QI   T  A+     LG  + +  +       +  L      I       + 
Sbjct: 9   TQDTPI-NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK--SIDGVE 65

Query: 552 YRAHELKKLQFLYLRGNFLQG--ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 609
           Y    L  L  +    N L     L +       L+ + ++NN+        L +L +L 
Sbjct: 66  Y----LNNLTQINFSNNQLTDITPLKNL----TKLVDILMNNNQIAD--ITPLANLTNLT 115

Query: 610 SLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSL 669
            L L  N ++  I  LKN T L  L+                         L SN    +
Sbjct: 116 GLTLFNNQITD-IDPLKNLTNLNRLE-------------------------LSSNTISDI 149

Query: 670 LPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPST 729
               L  L  LQ +    N ++   P  + NL  +  L                      
Sbjct: 150 --SALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERL---------------------- 182

Query: 730 AMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT 789
                                       D S N  S    L    L  L+S   +NN  +
Sbjct: 183 ----------------------------DISSNKVSDISVLA--KLTNLESLIATNNQIS 212

Query: 790 GRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIP--SSTQLQ 847
              P  +G + +L+ +  + NQL      +++SLT L  L+L+NN ++   P    T+L 
Sbjct: 213 DITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 268

Query: 848 SFDASS 853
                +
Sbjct: 269 ELKLGA 274

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 4e-09
 Identities = 47/273 (17%), Positives = 96/273 (35%), Gaps = 75/273 (27%)

Query: 589 LSNNKFTGNLPIS----LGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEF--V 642
           L +   T + PI+      +L       L K N++ T+ S  +   + TL         +
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI 61

Query: 643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR 702
           + +     E  + +  +   +N+   + P  L +L  L  + + +N ++      I  L 
Sbjct: 62  DGV-----EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-----ITPLA 109

Query: 703 AMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKN 762
            +  L                                                 +    N
Sbjct: 110 NLTNL-----------------------------------------------TGLTLFNN 122

Query: 763 NFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSS 822
             +   PL+  NL  L    LS+N  +     ++  + SL+ + F  NQ++   P  +++
Sbjct: 123 QITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LAN 175

Query: 823 LTYLNHLNLSNNNLTG--KIPSSTQLQSFDASS 853
           LT L  L++S+N ++    +   T L+S  A++
Sbjct: 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATN 208

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (358), Expect = 7e-37
 Identities = 77/405 (19%), Positives = 153/405 (37%), Gaps = 68/405 (16%)

Query: 242 LTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRF 301
             TL  L    +  F       L + +   L++ +    +    + L S+  L++   + 
Sbjct: 2   AATLATLPAPINQIF---PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 302 NSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFS 361
            +SI   +     LE L ++ N +    I  +++L  L ++ +   K++           
Sbjct: 57  -ASIQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT-----DISALQ 107

Query: 362 GCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDL 421
              +  L  L L   ++S      L     +Y L+L  N  +  +   L +++ L ++ +
Sbjct: 108 NLTN--LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTV 162

Query: 422 SYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIF 481
           + +++       + P           +L             L  L L+Y+ I   I  + 
Sbjct: 163 TESKVKD-----VTPIA---------NL-----------TDLYSLSLNYNQIE-DISPL- 195

Query: 482 WSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNN 540
            +S + ++      NQI   I  + N  +L  L +G+N  +   PL + S L  L+   N
Sbjct: 196 -ASLTSLHYFTAYVNQITD-ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253

Query: 541 SISGSIFHFICYRAHELKKLQFLYLRGNFLQ-----GELTDCWMNYQNLMILDLSNNKFT 595
            IS  I         +L KL+ L +  N +        L+        L  L L+NN+  
Sbjct: 254 QIS-DINAV-----KDLTKLKMLNVGSNQISDISVLNNLS-------QLNSLFLNNNQLG 300

Query: 596 GNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENE 640
                 +G L +L +L L +N+++  I  L + + + + D     
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (352), Expect = 4e-36
 Identities = 74/391 (18%), Positives = 145/391 (37%), Gaps = 66/391 (16%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
              DL       L       V        + ++  L ++  +   +    +  L+NL+YL
Sbjct: 17  PDADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKVASI--QGIEYLTNLEYL 71

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           +L+ N +   ++  L  L  L +L +    ++  S        L +L +L L+   +  +
Sbjct: 72  NLNGNQI--TDISPLSNLVKLTNLYIGTNKITDISAL----QNLTNLRELYLNEDNISDI 125

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
            PL  AN + + +L+L  N   N    + +  +  L +L +  +  +   P  + NLT L
Sbjct: 126 SPL--ANLTKMYSLNLGANH--NLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDL 179

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQ 351
             L L+ N+     P  L     L       N +    I  +A++  L S+ +     + 
Sbjct: 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIG----NN 231

Query: 352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLG 411
           +I+++                             L     L +L++  N I         
Sbjct: 232 KITDLSP---------------------------LANLSQLTWLEIGTNQISDINAV--K 262

Query: 412 HLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLGSRFPSWLHSQKHLNYLD 467
            L+ L+ +++  N+++      I       QL +L L +  LG+     +    +L  L 
Sbjct: 263 DLTKLKMLNVGSNQISD-----ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 468 LSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498
           LS + IT  I  +  +S S++   D +   I
Sbjct: 318 LSQNHIT-DIRPL--ASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  135 bits (343), Expect = 6e-35
 Identities = 73/361 (20%), Positives = 151/361 (41%), Gaps = 39/361 (10%)

Query: 355 EIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLS 414
            I  IF     +     VL+ +SV+  +T    + +++  L ++   +       + +L+
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLT 66

Query: 415 TLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSY 470
            L++++L+ N++       I P     +L  L +    +     S L +  +L  L L+ 
Sbjct: 67  NLEYLNLNGNQITD-----ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNE 119

Query: 471 SGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS- 529
             I+  I  +  ++ +++Y L+L  N     +  L+N   L  L++  +      P+ + 
Sbjct: 120 DNIS-DISPL--ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL 176

Query: 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELTDCWMNYQNLMIL 587
           ++L  L  + N I   I          L  L +     N +     + +       L  L
Sbjct: 177 TDLYSLSLNYNQIE-DISPL-----ASLTSLHYFTAYVNQITDITPVANM----TRLNSL 226

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPT 647
            + NNK T      L +L  L  L +  N +S  I+++K+ T L  L+VG N+ + +I  
Sbjct: 227 KIGNNKITD--LSPLANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQ-ISDISV 282

Query: 648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707
                 S++  L L +N+  +   + +  L  L  + L+ N+++   P  + +L  M + 
Sbjct: 283 L--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338

Query: 708 N 708
           +
Sbjct: 339 D 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  135 bits (343), Expect = 7e-35
 Identities = 69/406 (16%), Positives = 140/406 (34%), Gaps = 81/406 (19%)

Query: 140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY 199
            +       L       ++      L ++  L ++   +   ++  +  L+ L+ L+L+ 
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNG 75

Query: 200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPN 259
             ++     +   + L  L  L +   ++  +  L   N + L  L L  +    S +  
Sbjct: 76  NQITD----ISPLSNLVKLTNLYIGTNKITDISAL--QNLTNLRELYLNEDNI--SDISP 127

Query: 260 WVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLG 319
            +  L ++  L+L  N+        L N+T L +L +  ++     P  +     L SL 
Sbjct: 128 -LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 320 VSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVS 379
           ++ N +    I  +ASL +L        +++                             
Sbjct: 184 LNYNQI--EDISPLASLTSLHYFTAYVNQITDITP------------------------- 216

Query: 380 GHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQL 439
                 +     L  L + NN I    P  L +LS L ++++  N+++      I   + 
Sbjct: 217 ------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-----INAVK- 262

Query: 440 ATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH 499
                                  L  L++  + I+  I  +  ++ SQ+  L L+ NQ+ 
Sbjct: 263 -------------------DLTKLKMLNVGSNQIS-DISVL--NNLSQLNSLFLNNNQLG 300

Query: 500 GQIPN-LTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSIS 543
            +    +     L  L L  N  +   PL S S +   DF+N  I 
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (338), Expect = 3e-34
 Identities = 74/456 (16%), Positives = 147/456 (32%), Gaps = 129/456 (28%)

Query: 385 KLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGL 444
                       L   S+   +      L ++  + ++  ++       I   +  T   
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS-----IQGIEYLT--- 66

Query: 445 RHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN 504
                            +L YL+L+ + IT  I  +  S+  ++  L +  N+I   I  
Sbjct: 67  -----------------NLEYLNLNGNQIT-DISPL--SNLVKLTNLYIGTNKIT-DISA 105

Query: 505 LTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563
           L N   L  L L  ++ S   PL + + +  L+   N     +          +  L +L
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPL-----SNMTGLNYL 160

Query: 564 YLRGNFLQG--ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGT 621
            +  + ++    + +      +L  L L+ N+        L SL SL       N ++  
Sbjct: 161 TVTESKVKDVTPIANL----TDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD- 213

Query: 622 IHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQ 681
           I  + N T L +L                          + +NK   L    L +L+ L 
Sbjct: 214 ITPVANMTRLNSLK-------------------------IGNNKITDL--SPLANLSQLT 246

Query: 682 IVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMK 741
            +++  N +S      I+ ++ +  L                                  
Sbjct: 247 WLEIGTNQISD-----INAVKDLTKL---------------------------------- 267

Query: 742 GRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRS 801
                        ++++   N  S    L   NL  L S  L+NN       E IG + +
Sbjct: 268 -------------KMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 802 LESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837
           L ++  S N ++   P  ++SL+ ++  + +N  + 
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (324), Expect = 2e-32
 Identities = 76/346 (21%), Positives = 136/346 (39%), Gaps = 45/346 (13%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            +  +L+ ++ L ++      +Q    I  + NL YLNL+  Q   + P  L NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L +  N +   ++  L  L+ L++L L+  N+S  S        L  +  L L       
Sbjct: 93  LYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLS 146

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
                ++N + L  L +  ++  +  V   +  L  L  L L  N  +   P  L +LTS
Sbjct: 147 DLS-PLSNMTGLNYLTVTESKVKD--VTP-IANLTDLYSLSLNYNQIEDISP--LASLTS 200

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLS 350
           L +     N+     P  +    RL SL + NN +    +  +A+L  L  + +     +
Sbjct: 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIG----T 252

Query: 351 QEISEIFDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIP 407
            +IS+I +         L++L +     S +S      L     L  L L+NN +     
Sbjct: 253 NQISDI-NAVKDLTK--LKMLNVGSNQISDISV-----LNNLSQLNSLFLNNNQLGNEDM 304

Query: 408 FSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGLRHCHL 449
             +G L+ L  + LS N +       I P     ++ +    +  +
Sbjct: 305 EVIGGLTNLTTLFLSQNHITD-----IRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (298), Expect = 5e-29
 Identities = 74/422 (17%), Positives = 137/422 (32%), Gaps = 88/422 (20%)

Query: 439 LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498
            ATL      +   FP             L  + +T  +          I  L ++  ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 499 HGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHEL 557
              I  +     LE L+L  N  +   PL +   L  L    N I+      +      L
Sbjct: 57  A-SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT--DISALQ----NL 109

Query: 558 KKLQFLYLRGNFLQG--ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 615
             L+ LYL  + +     L     N   +  L+L  N    +L   L ++  L  L + +
Sbjct: 110 TNLRELYLNEDNISDISPLA----NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTE 164

Query: 616 NNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLC 675
           + +   +  + N T L +L                          L  N+   +    L 
Sbjct: 165 SKVKD-VTPIANLTDLYSLS-------------------------LNYNQIEDI--SPLA 196

Query: 676 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED 735
            L  L       N ++   P  + N+  + +L       I    +               
Sbjct: 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLK------IGNNKI--------------- 233

Query: 736 ALVVMKGRAAEYKCILNLV--RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP 793
                     +   + NL     ++   N  S    ++  +L  L+  N+ +N  +    
Sbjct: 234 ---------TDLSPLANLSQLTWLEIGTNQISDINAVK--DLTKLKMLNVGSNQISD--I 280

Query: 794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS--TQLQSFDA 851
             +  +  L S+  + NQL  E  + +  LT L  L LS N++T   P +  +++ S D 
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADF 340

Query: 852 SS 853
           ++
Sbjct: 341 AN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            ++ DL  L  L++  N    + +   + ++  L  L L+  Q        +G L+NL  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK 204
           L LS N  ++ ++  L  LS +   D +   + K
Sbjct: 316 LFLSQN--HITDIRPLASLSKMDSADFANQVIKK 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  139 bits (353), Expect = 2e-35
 Identities = 87/522 (16%), Positives = 178/522 (34%), Gaps = 82/522 (15%)

Query: 109 VNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNL 168
           +NP  +    L       ++    ++P    ++ +      +++++    PP  G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 169 QYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL 228
               L                    +L+L+ + LS       +    P L  L  S   L
Sbjct: 61  AVSRLRDCLD-----------RQAHELELNNLGLS------SLPELPPHLESLVASCNSL 103

Query: 229 HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNL 288
             LP L   +  +L   +        S +P        L +L +  N  +  +PE LQN 
Sbjct: 104 TELPEL-PQSLKSLLVDNNNLKAL--SDLPP------LLEYLGVSNNQLEK-LPE-LQNS 152

Query: 289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVK 348
           + LK + +D+N     +P+       LE +   NN L+   +  + +L  L ++      
Sbjct: 153 SFLKIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS 206

Query: 349 LSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPF 408
           L +                LE +V   + +   L  +L     L  +   NN +   +P 
Sbjct: 207 LKKLPDLP---------LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD 254

Query: 409 SLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDL 468
               L  L   ++  N L  + +    P  L  L +      S          +L YL+ 
Sbjct: 255 LPPSLEAL---NVRDNYLTDLPEL---PQSLTFLDVSENIF-SGLSELP---PNLYYLNA 304

Query: 469 SYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLI 528
           S + I  S+ +        +  L++S N++  ++P L    +LE L    N  +  +P +
Sbjct: 305 SSNEIR-SLCD----LPPSLEELNVSNNKLI-ELPALP--PRLERLIASFNHLA-EVPEL 355

Query: 529 SSNLIELDFSNNSISG-----------SIFHFICYRAHELKKLQFLYLRGNFLQGELTDC 577
             NL +L    N +              +   +       + L+ L++  N     L + 
Sbjct: 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN----PLREF 411

Query: 578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
               +++  L +++ +       +  +   L+      ++  
Sbjct: 412 PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 2e-30
 Identities = 90/519 (17%), Positives = 160/519 (30%), Gaps = 89/519 (17%)

Query: 188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIAN--------- 238
             +FL++      NL++          + S  +   +  +     P              
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEA---ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 239 ----FSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL 294
                     L+L       S +P        L  L    N+    +PE  Q+L SL   
Sbjct: 66  RDCLDRQAHELELNNLGL--SSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVD 119

Query: 295 LLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEIS 354
             +    +   P        LE LGVSNN L+   +  + +   L+ + +    L +   
Sbjct: 120 NNNLKALSDLPPL-------LEYLGVSNNQLE--KLPELQNSSFLKIIDVDNNSLKKLPD 170

Query: 355 EIFDIFSGCVSSGLEILVLRGSSVSGHLTY--KLGQFKNLYYLDLSNNSIVGPIPFSLGH 412
                        LE +    +     L    +L     L  +   NNS+   +P     
Sbjct: 171 LP---------PSLEFIAAGNN----QLEELPELQNLPFLTAIYADNNSLKK-LPDLPLS 216

Query: 413 LSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSG 472
           L ++       N L  + +    P  L T+   +  L    P    S + LN  D   + 
Sbjct: 217 LESI---VAGNNILEELPELQNLP-FLTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTD 271

Query: 473 ITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNL 532
           +     ++     + + V +  F+ +    PNL        L+  SN    +L  +  +L
Sbjct: 272 LPELPQSL-----TFLDVSENIFSGLSELPPNLYY------LNASSNEIR-SLCDLPPSL 319

Query: 533 IELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNN 592
            EL+ SNN +   +            +L+ L    N L  E+ +     QNL  L +  N
Sbjct: 320 EELNVSNNKLI-ELPALPP-------RLERLIASFNHLA-EVPEL---PQNLKQLHVEYN 367

Query: 593 KFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGER 652
                 P    S+  L+ ++     +     +LK       L V  N   E  P      
Sbjct: 368 PLR-EFPDIPESVEDLR-MNSHLAEVPELPQNLK------QLHVETNPLRE-FPDIPES- 417

Query: 653 FSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
              +  L + S +              L+      ++  
Sbjct: 418 ---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (313), Expect = 3e-30
 Identities = 92/551 (16%), Positives = 172/551 (31%), Gaps = 106/551 (19%)

Query: 287 NLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC 346
           + T L+  L  S+   + +P              + +  +            +    L  
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR- 66

Query: 347 VKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPI 406
                           C+      L L        L+       +L  L  S NS+   +
Sbjct: 67  ---------------DCLDRQAHELELNNLG----LSSLPELPPHLESLVASCNSLT-EL 106

Query: 407 PFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYL 466
           P     L +L   + +   L+      +PP  L  LG+ +  L  + P  L +   L  +
Sbjct: 107 PELPQSLKSLLVDNNNLKALSD-----LPP-LLEYLGVSNNQL-EKLPE-LQNSSFLKII 158

Query: 467 DLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALP 526
           D+  + +   +P+        +  +    NQ+  ++P L N   L  +   +NS    LP
Sbjct: 159 DVDNNSLK-KLPD----LPPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLP 211

Query: 527 LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMI 586
            +  +L  +   NN +       +      L  L  +Y   N L+  L D      +L  
Sbjct: 212 DLPLSLESIVAGNNILE--ELPELQ----NLPFLTTIYADNNLLK-TLPDLP---PSLEA 261

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIP 646
           L++ +N  T +LP    SL  L       + LS    +L        L+   NE      
Sbjct: 262 LNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLY------YLNASSNEIRS--- 311

Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 706
             + +    +  L + +NK    LP        L+ +  + N+L+ EVP    NL+    
Sbjct: 312 --LCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EVPELPQNLKQ--- 361

Query: 707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSG 766
                         L+    P                            + D   N+   
Sbjct: 362 --------------LHVEYNPLREFPDI------------------PESVEDLRMNSHLA 389

Query: 767 KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYL 826
           ++P    NLK L   ++  N      P+      S+E +  +  ++      +  +   L
Sbjct: 390 EVPELPQNLKQL---HVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKL 442

Query: 827 NHLNLSNNNLT 837
                 +++  
Sbjct: 443 EDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  111 bits (279), Expect = 6e-26
 Identities = 80/473 (16%), Positives = 148/473 (31%), Gaps = 75/473 (15%)

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
            + P  ++N + L       +    + +P     +          + ++   P G     
Sbjct: 2   FINPRNVSN-TFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR 58

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKL 349
            +    L                     L ++N  L    +       +L S++ SC  L
Sbjct: 59  EMAVSRLRDCLDRQ-----------AHELELNNLGLS--SLPE--LPPHLESLVASCNSL 103

Query: 350 SQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS 409
           +    E+ ++     S  L +      ++S            L YL +SNN +   +P  
Sbjct: 104 T----ELPELPQSLKS--LLVDNNNLKALSDLP-------PLLEYLGVSNNQLEK-LP-E 148

Query: 410 LGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLS 469
           L + S L+ ID+  N L  + D    P  L  +   +  L    P  L +   L  +   
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL-EELPE-LQNLPFLTAIYAD 203

Query: 470 YSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS 529
            + +              +  +    N +  ++P L N   L  +   +N     LP + 
Sbjct: 204 NNSLKKLPDLP-----LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK-TLPDLP 256

Query: 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589
            +L  L+  +N ++  +          L  L       + L            NL  L+ 
Sbjct: 257 PSLEALNVRDNYLT-DLPELPQ----SLTFLDVSENIFSGLSELPP-------NLYYLNA 304

Query: 590 SNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWI 649
           S+N+   +L        SL+ L++  N L            L  L    N   E +P   
Sbjct: 305 SSNEIR-SLC---DLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAE-VPELP 356

Query: 650 GERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR 702
                 +  L +  N      P     +  L++     N+   EVP    NL+
Sbjct: 357 Q----NLKQLHVEYNPLREF-PDIPESVEDLRM-----NSHLAEVPELPQNLK 399

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (277), Expect = 1e-25
 Identities = 76/459 (16%), Positives = 151/459 (32%), Gaps = 95/459 (20%)

Query: 388 QFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHC 447
               L      ++++   +P    ++ +      +++E         PP       +   
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERN----APPGNGEQREMAVS 63

Query: 448 HLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ---IHGQIPN 504
            L           +  + L+L+  G++ S+P +       +  L  S N    +     +
Sbjct: 64  RLRDCLD------RQAHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELPQS 112

Query: 505 LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLY 564
           L +   L V +    +    L  +   L  L  SNN +   +             L+ + 
Sbjct: 113 LKS---LLVDNNNLKA----LSDLPPLLEYLGVSNNQLE-KLPEL-----QNSSFLKIID 159

Query: 565 LRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS 624
           +  N L+ +L D      +L  +   NN+    LP  L +L  L +++   N+L      
Sbjct: 160 VDNNSLK-KLPD---LPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDL 213

Query: 625 LKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD 684
             +   L ++  G N   E +P    +    +  +   +N   + LP        L+ ++
Sbjct: 214 PLS---LESIVAGNNIL-EELPEL--QNLPFLTTIYADNNLLKT-LPDLPPS---LEALN 263

Query: 685 LADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRA 744
           + DN L+ ++P    +L  +                   S                    
Sbjct: 264 VRDNYLT-DLPELPQSLTFLDVSE------------NIFSGLSE---------------- 294

Query: 745 AEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLES 804
                  NL   ++ S N     +     +L+ L   N+SNN     +P        LE 
Sbjct: 295 ----LPPNL-YYLNASSNEIR-SLCDLPPSLEEL---NVSNNKLI-ELPALPP---RLER 341

Query: 805 IDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS 843
           +  S N L+ E+P+   +L     L++  N L  + P  
Sbjct: 342 LIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDI 375

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.7 bits (218), Expect = 3e-18
 Identities = 63/388 (16%), Positives = 121/388 (31%), Gaps = 94/388 (24%)

Query: 459 SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGS 518
           S   L       S +T  +P     +         ++++     P               
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEA-ENVKSKTEYYNAWSEWERNAPP-------GNGEQRE 59

Query: 519 NSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCW 578
            + S     +     EL+ +N  +S S+             L+ L    N L  EL +  
Sbjct: 60  MAVSRLRDCLDRQAHELELNNLGLS-SLPE-------LPPHLESLVASCNSLT-ELPELP 110

Query: 579 MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGE 638
            + ++L++ + +    +   P        L+ L +  N L   +  L+N + L  +DV  
Sbjct: 111 QSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPELQNSSFLKIIDVDN 162

Query: 639 NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCI 698
           N   + +P         +  +   +N+   L    L +L FL  +   +N+L  ++P   
Sbjct: 163 NSL-KKLPDLPP----SLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLP 214

Query: 699 HNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIID 758
            +L                                                       I 
Sbjct: 215 LSL-----------------------------------------------------ESIV 221

Query: 759 FSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQ 818
              N        E+ NL  L +    NN     +P+      SLE+++   N L+ ++P+
Sbjct: 222 AGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPE 274

Query: 819 SMSSLTYLNHLNLSNNNLTGKIPSSTQL 846
              SLT+L+      + L+   P+   L
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 5e-13
 Identities = 59/363 (16%), Positives = 99/363 (27%), Gaps = 112/363 (30%)

Query: 491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFI 550
                + +        N           + +    P  +    E+  S            
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC------- 68

Query: 551 CYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 610
                  ++   L L    L   L +      +L  L  S N  T  LP    SL SL  
Sbjct: 69  -----LDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLV 118

Query: 611 LHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLL 670
            +     LS     L+                                L + +N+   L 
Sbjct: 119 DNNNLKALSDLPPLLE-------------------------------YLGVSNNQLEKLP 147

Query: 671 PKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTA 730
              L + +FL+I+D+ +N+L  ++P    +L                             
Sbjct: 148 E--LQNSSFLKIIDVDNNSLK-KLPDLPPSL----------------------------- 175

Query: 731 MLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG 790
                                     I    N    ++P E+ NL  L +    NN    
Sbjct: 176 ------------------------EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK- 208

Query: 791 RIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFD 850
           ++P+      SLESI    N L  E+P  + +L +L  +   NN L         L++ +
Sbjct: 209 KLPDLPL---SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALN 263

Query: 851 ASS 853
              
Sbjct: 264 VRD 266

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 7e-11
 Identities = 50/268 (18%), Positives = 89/268 (33%), Gaps = 58/268 (21%)

Query: 598 LPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGE------ 651
           +     S   LQ      +NL+      +N  +        +E+  N P   GE      
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 652 ------RFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 705
                    +   L L +    SL          L+ +  + N+L+ E+P    +L++++
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 706 TLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFS 765
             N                                         +  L+  +  S N   
Sbjct: 118 VDN------------NNLKALSD---------------------LPPLLEYLGVSNNQLE 144

Query: 766 GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTY 825
            K+P E+ N   L+  ++ NN    ++P+      SLE I    NQL  E+P  + +L +
Sbjct: 145 -KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPF 196

Query: 826 LNHLNLSNNNLTGKIPSSTQLQSFDASS 853
           L  +   NN+L         L+S  A +
Sbjct: 197 LTAIYADNNSLKKLPDLPLSLESIVAGN 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 19/111 (17%)

Query: 767 KIPLEVTNLKALQSFNLSNNFFTGRIPESIGA-------------MRSLESIDFSLNQLS 813
           ++P+E  N+K+   +  + + +    P   G               R    ++ +   LS
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 814 GEIPQSMSSLTYLNHLNLSNNNLTGKIPSS-TQLQSFDASSYAGNDLCGAP 863
             +P+    L     L  S N+LT ++P     L+S    +     L   P
Sbjct: 85  -SLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (343), Expect = 6e-34
 Identities = 62/460 (13%), Positives = 126/460 (27%), Gaps = 45/460 (9%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
                 ++  LDLS N    +     +     L  LNLS           L +LS L+ L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTL 85

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           DL+ N++       L     ++ L  +  N+S+ S      +       + L+  ++  L
Sbjct: 86  DLNNNYVQE-----LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITML 135

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
             L     S +  LDL  N+ D             L  L+L+ N     +   +     L
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKL 193

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQ 351
           K L L SN+  + +         +  + + NN L   + +++    NL    L       
Sbjct: 194 KTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLG 411
                F       S    +  +   +V         +                       
Sbjct: 252 GTLRDF------FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC---EDLPAP 302

Query: 412 HLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
               L  +    + L     +     +                           +D    
Sbjct: 303 FADRLIALKRKEHALLSGQGSETERLECERENQ----------------ARQREIDALKE 346

Query: 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA-AQLEVLSLGSNSFSGALPLISS 530
               ++ +           L+     +  Q+ N   A A+L+     +      L   + 
Sbjct: 347 QYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATE 404

Query: 531 NLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFL 570
               L      +      ++  ++ +   ++   +  +  
Sbjct: 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (319), Expect = 7e-31
 Identities = 63/460 (13%), Positives = 145/460 (31%), Gaps = 18/460 (3%)

Query: 438 QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ 497
           +     +    L     S   S  ++  LDLS + ++        +  +++ +L+LS N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV 69

Query: 498 IHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHEL 557
           ++ +  +L + + L  L L +N     L     ++  L  +NN+IS              
Sbjct: 70  LY-ETLDLESLSTLRTLDLNNNYVQELLVG--PSIETLHAANNNISRV-------SCSRG 119

Query: 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKN 616
           +  + +YL  N +             +  LDL  N+    N      S  +L+ L+L+ N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 617 NLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD 676
            +   +        L TLD+  N+    +        + +  + LR+NK   +  K L  
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQ-SAAGVTWISLRNNKLVLI-EKALRF 235

Query: 677 LAFLQIVDLADNNLS-GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED 735
              L+  DL  N    G +       + + T+     K +  Q     +           
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 736 ALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPES 795
              +    A     +      +   + + + ++  E  N    +  +     +   I + 
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 796 IGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYA 855
               ++  +++     L  ++     +   L+              ++ +          
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

Query: 856 GNDLCGAPLPRNCSEHVSTPEDENGDEDELDYWLYVSIAL 895
                   + +  S   +   D +  + +       +  L
Sbjct: 416 VKRYEEMYVEQQ-SVQNNAIRDWDMYQHKETQLAEENARL 454

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (312), Expect = 5e-30
 Identities = 59/511 (11%), Positives = 131/511 (25%), Gaps = 92/511 (18%)

Query: 134 IPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK 193
           I     +    +   ++ +     +     +  N++ LDLS N L   +   L   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD 253
            L+LS   L +  D      +L +L  L L+   +  L         ++ TL    N   
Sbjct: 62  LLNLSSNVLYETLDL----ESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNI- 111

Query: 254 NSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNS-SIPNWLYRF 312
            S V            + L  N             + +++L L  N  ++ +        
Sbjct: 112 -SRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 313 NRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILV 372
           + LE L +  N +    ++       L+++ LS  KL+                      
Sbjct: 169 DTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA---------------------- 204

Query: 373 LRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDN 432
                    +  +      + ++ L NN +V  I  +L     L+  DL  N  +     
Sbjct: 205 --------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL- 254

Query: 433 WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLD 492
                                  +    + +  +          +        +   +  
Sbjct: 255 ---------------------RDFFSKNQRVQTVAKQ---TVKKLTGQNEEECTVPTLGH 290

Query: 493 LSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICY 552
                                  L +      + L       L    +         +  
Sbjct: 291 YGAYCC---------------EDLPAPFADRLIALKRKEHALLSGQGSETER-----LEC 330

Query: 553 RAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 612
                 + + +       +  +    +  Q  + L+         +     +   L    
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 613 LRKNNLSGTIHSLKNCTALLTLDVGENEFVE 643
            +        H+ +  + L  L      + E
Sbjct: 391 QQAVGQIELQHATEEQSPLQLLRAIVKRYEE 421

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (298), Expect = 3e-28
 Identities = 70/434 (16%), Positives = 137/434 (31%), Gaps = 53/434 (12%)

Query: 264 LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNN 323
             +     +  ++ +  +    Q+  ++K L L  N  +      L  F +LE L +S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 324 SLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLT 383
            L       + SL  LR++ L+    +  + E+    S      +E L    +++S    
Sbjct: 69  VLYE--TLDLESLSTLRTLDLN----NNYVQELLVGPS------IETLHAANNNIS---R 113

Query: 384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG 443
               + +    + L+NN I        G  S +Q++DL  NE++ +N             
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------- 160

Query: 444 LRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP 503
                    F     S   L +L+L Y+ I      + ++    +  LDLS N++    P
Sbjct: 161 ---------FAELAASSDTLEHLNLQYNFIYDVKGQVVFAK---LKTLDLSSNKLAFMGP 208

Query: 504 NLTNAAQLEVLSLGSNSFSGALPLIS--SNLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
              +AA +  +SL +N        +    NL   D   N            R    K  +
Sbjct: 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQR 263

Query: 562 FLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGT 621
              +    ++              +                  LI+L+       +  G+
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 622 I-----HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD 676
                    +N      +D  + ++   +   +  R    + L  +       +  G   
Sbjct: 324 ETERLECERENQARQREIDALKEQY-RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 677 LAFLQIVDLADNNL 690
            A L          
Sbjct: 383 HAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (286), Expect = 1e-26
 Identities = 46/323 (14%), Positives = 104/323 (32%), Gaps = 19/323 (5%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             L  L  L  LDL+ N  Q       +    ++  L+ +       +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI-SRVSC--SRGQGKKN 124

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           + L+ N + +         S ++ LDL    +    ++  +  +  +L  L L    ++ 
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYD 183

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           +       F+ L TLDL  N+   +F+         + ++ LR N     I + L+   +
Sbjct: 184 VKGQ--VVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238

Query: 291 LKHLLLDSNRFNS-SIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKL 349
           L+H  L  N F+  ++ ++  +  R++++  +  +++    ++                 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 350 SQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS 409
               +   D           +L  +GS     L  +         +D         I   
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQV 355

Query: 410 LGHLSTLQFIDLSYNELNGMNDN 432
                    ++     L+    N
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSN 378

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (283), Expect = 2e-26
 Identities = 78/547 (14%), Positives = 168/547 (30%), Gaps = 83/547 (15%)

Query: 281 IPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR 340
           I E  QN    K   +  +    ++ +       ++ L +S N L       +A    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 341 SVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNN 400
            + LS    S  + E  D+                                L  LDL+NN
Sbjct: 62  LLNLS----SNVLYETLDL---------------------------ESLSTLRTLDLNNN 90

Query: 401 SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQ 460
            +       L    +++ +  + N ++ ++ +         + L +  +          +
Sbjct: 91  YVQ-----ELLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCR 143

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
             + YLDL  + I         +S+  +  L+L +N I+  +      A+L+ L L SN 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK 202

Query: 521 FSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMN 580
            +          +  +F +                    + ++ LR N L   +      
Sbjct: 203 LAF---------MGPEFQS-----------------AAGVTWISLRNNKLV-LIEKALRF 235

Query: 581 YQNLMILDLSNNKF-TGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
            QNL   DL  N F  G L         +Q++  +      T  + + CT       G  
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAY 294

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSL-------LPKGLCDLAFLQIVDLADNNLSG 692
              +    +      R++ L  + +   S        L     + A  + +D        
Sbjct: 295 CCEDLPAPF----ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 693 EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILN 752
            + +     +A +TL        +       + A     L +    +    A E     +
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE---EQS 407

Query: 753 LVRIIDFSKNNFSGK-IPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQ 811
            ++++      +    +  +     A++ +++  +  T    E+    +     D +L  
Sbjct: 408 PLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467

Query: 812 LSGEIPQ 818
            +  + +
Sbjct: 468 ANATLQE 474

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.3 bits (224), Expect = 6e-19
 Identities = 43/281 (15%), Positives = 85/281 (30%), Gaps = 39/281 (13%)

Query: 557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 616
             + +   +  + L+  L     +  N+  LDLS N  +      L     L+ L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 617 NLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD 676
            L      L++ + L TLD+  N   E +          +  L   +N    +       
Sbjct: 69  VLY-ETLDLESLSTLRTLDLNNNYVQE-LLV-----GPSIETLHAANNNISRVSCSRGQG 121

Query: 677 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDA 736
              +    LA+N ++            +  L+                        L+  
Sbjct: 122 KKNI---YLANNKITMLRDLDEGCRSRVQYLD------------------------LKLN 154

Query: 737 LVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI 796
            +     A        L   ++   N     +  +      L++ +LS+N     +    
Sbjct: 155 EIDTVNFAELAASSDTL-EHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEF 210

Query: 797 GAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837
            +   +  I    N+L   I +++     L H +L  N   
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 4e-13
 Identities = 53/297 (17%), Positives = 96/297 (32%), Gaps = 48/297 (16%)

Query: 574 LTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALL 632
           + +   N     I  ++++     L     S  +++ L L  N LS  +   L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 633 TLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG 692
            L++  N   E +        S +  L L +N    LL         ++ +  A+NN+S 
Sbjct: 62  LLNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISR 113

Query: 693 EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILN 752
                    +                  +Y +    T +           R  +  C   
Sbjct: 114 VSCSRGQGKKN-----------------IYLANNKITML-----------RDLDEGCRSR 145

Query: 753 LVRIIDFSKNNFSG-KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQ 811
           + + +D   N            +   L+  NL  NF    +   +     L+++D S N+
Sbjct: 146 V-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNK 202

Query: 812 LSGEIPQSMSSLTYLNHLNLSNNNLT---GKIPSSTQLQSFDASSYAGNDLCGAPLP 865
           L+  +     S   +  ++L NN L      +  S  L+ FD     GN      L 
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR---GNGFHCGTLR 255

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 20/220 (9%), Positives = 56/220 (25%), Gaps = 7/220 (3%)

Query: 109 VNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNL 168
           +  +L   ++L + DL  N F    +  F      ++ +         +        +  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ--TVKKLTGQNEEECTVP 286

Query: 169 QYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNT--LPSLVKLRLSRC 226
                           +   L  LK  + + ++   +                ++   + 
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 227 QLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQ 286
           Q   +            TL+      D     +        +   L++   Q  +    +
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDE--QVSNGRRAHAELDGTLQQAVGQIELQHATE 404

Query: 287 NLTSLKHLLLDSNRFN-SSIPNWLYRFNRLESLGVSNNSL 325
             + L+ L     R+    +     + N +    +  +  
Sbjct: 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 24/227 (10%), Positives = 56/227 (24%), Gaps = 19/227 (8%)

Query: 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSN 167
            + P       ++++ L  N      I + +    NL + +L    F            N
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKN 261

Query: 168 LQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ 227
            +   ++   +           +                           L+ L+     
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA-----PFADRLIALKRKEHA 316

Query: 228 LHHLP-------PLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQG 279
           L                N +    +D L  Q+    V + V       + L+ ++     
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRT--VIDQVTLRKQAKITLEQKKKALDE 374

Query: 280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
            +  G +    L   L  +      + +     + L+ L       +
Sbjct: 375 QVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYE 420

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  133 bits (337), Expect = 5e-33
 Identities = 103/538 (19%), Positives = 182/538 (33%), Gaps = 80/538 (14%)

Query: 122 LDLSYNDFQGV--QIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLY 179
           +D S N    V   + +          LN+S      +    + +LS L+ L +S N   
Sbjct: 5   VDRSKNGLIHVPKDLSQ------KTTILNISQNYISELWTSDILSLSKLRILIISHN--- 55

Query: 180 VENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANF 239
              + +L    F                          L  L LS  +L  +        
Sbjct: 56  --RIQYLDISVFKF---------------------NQELEYLDLSHNKLVKIS---CHPT 89

Query: 240 STLTTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDS 298
             L  LDL +N FD +      FG + QL FL L   + +      + +L   K LL+  
Sbjct: 90  VNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 299 NRFNSSIPN------WLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR-SVMLSCVKLSQ 351
             +                 + +       + +    ++++A+L       +L   K S 
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLG 411
            +S +  + +    S L +  +  +  S     +L     ++Y  +SN  + G + F   
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 412 HLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
             S      LS +++   +    P   +                      ++N  + + S
Sbjct: 269 DYSGTSLKALSIHQVV-SDVFGFPQSYI-----------------YEIFSNMNIKNFTVS 310

Query: 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLIS- 529
           G    +  +  S  S    LD S N +   +  N  +  +LE L L  N     L  I+ 
Sbjct: 311 GTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAE 368

Query: 530 -----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584
                 +L +LD S NS+S       C      K L  L +  N L   +  C      +
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSW---TKSLLSLNMSSNILTDTIFRCLP--PRI 423

Query: 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEF 641
            +LDL +NK   ++P  +  L +LQ L++  N L           T+L  + +  N +
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (276), Expect = 2e-25
 Identities = 96/505 (19%), Positives = 182/505 (36%), Gaps = 63/505 (12%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRR 274
                L +S+  +  L    I + S L  L + +N+    ++   VF    +L +LDL  
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSH 78

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNS-SIPNWLYRFNRLESLGVSNNSLQGRVIRSM 333
           N     I        +LKHL L  N F++  I       ++L+ LG+S   L+   +  +
Sbjct: 79  NKLVK-IS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLY 393
           A L   + +++      ++     +      +  L I+          L   +    NL 
Sbjct: 136 AHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 394 YLDLSNNSIVGPIPFSLGHLSTLQF-IDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSR 452
             ++          + L  L+ LQ    LS   LN +   W    ++  L          
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL---------- 243

Query: 453 FPSWLHSQKHLNYLDLSYSG-ITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNL-TNAAQ 510
              W  +  + +  ++   G +     +   +S   + +  +  +        +    + 
Sbjct: 244 --VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 511 LEVLSLGSN---SFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRG 567
           + + +   +         P   S  + LDFSNN ++ ++F         L +L+ L L+ 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC----GHLTELETLILQM 357

Query: 568 NFLQ--GELTDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLSGTIHS 624
           N L+   ++ +     ++L  LD+S N  + +          SL SL++  N L+ TI  
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-- 415

Query: 625 LKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD 684
            +     +                         VL L SNK  S+ PK +  L  LQ ++
Sbjct: 416 FRCLPPRIK------------------------VLDLHSNKIKSI-PKQVVKLEALQELN 450

Query: 685 LADNNLSGEVPRCI-HNLRAMVTLN 708
           +A N L   VP  I   L ++  + 
Sbjct: 451 VASNQLK-SVPDGIFDRLTSLQKIW 474

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (269), Expect = 2e-24
 Identities = 88/464 (18%), Positives = 157/464 (33%), Gaps = 62/464 (13%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGM-IPPQLGNLSNLQYLDL 173
             + L YLDLS+N    +          NL++L+LS+  F  + I  + GN+S L++L L
Sbjct: 67  FNQELEYLDLSHNKLVKISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
           S   L   ++  +  L+  K L +      +  D       L       L      +   
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKED----PEGLQDFNTESLHIVFPTNKEF 178

Query: 234 LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKH 293
             I + S  T  +L  +        N     + ++                     +L +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL---------TLNN 229

Query: 294 LLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL--CNLRSVMLSCVKLSQ 351
           +    N F   +    +    +    +SN  LQG++          +L+++ +  V    
Sbjct: 230 IETTWNSFIRILQLVWH--TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLG 411
                  I+    +  + I     S           +     +LD SNN +   +  + G
Sbjct: 288 FGFPQSYIYEIFSN--MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 412 HLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
           HL+ L+ + L  N             QL  L        S+        K L  LD+S +
Sbjct: 346 HLTELETLILQMN-------------QLKEL--------SKIAEMTTQMKSLQQLDISQN 384

Query: 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS----GALPL 527
            ++        S    +  L++S N +           +++VL L SN         + L
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKL 443

Query: 528 ISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGN 568
               L EL+ ++N   S+   IF         L  LQ ++L  N
Sbjct: 444 --EALQELNVASNQLKSVPDGIF-------DRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.5 bits (235), Expect = 3e-20
 Identities = 81/472 (17%), Positives = 163/472 (34%), Gaps = 59/472 (12%)

Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP------FQLATLG 443
           +    L++S N I       +  LS L+ + +S+N +       +         +L  L 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-----LDISVFKFNQELEYLD 75

Query: 444 LRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH-GQI 502
           L H  L            +L +LDLS++          + + SQ+  L LS   +    +
Sbjct: 76  LSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 503 PNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRA-HELKKL 560
             + +    +VL +   ++          +           +   FHFI   +   +  L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 561 QFLYLRGNFLQGELTD------CWMNYQNLMILDLSNNKFTGNLPISLGSLI---SLQSL 611
           +   ++      + +              L  L L+N + T N  I +  L+   ++   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 612 HLRKNNLSGTIHSLKNCTALLTLDVGENEFVEN-----IPTWIGERFSRMVVLILRSNKF 666
            +    L G +       +  +L       V +       ++I E FS M +     +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 667 HSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRA 726
             +       ++    +D ++N L+  V     +L  + TL                   
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI------------------ 354

Query: 727 PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEV-TNLKALQSFNLSN 785
                L  + L  +   A     + +L + +D S+N+ S        +  K+L S N+S+
Sbjct: 355 -----LQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 786 NFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837
           N  T  I   +     ++ +D   N++   IP+ +  L  L  LN+++N L 
Sbjct: 409 NILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 73/428 (17%), Positives = 141/428 (32%), Gaps = 58/428 (13%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQ-YLDLS 174
             +L +LDLS+N F  + I +   +M  L++L LS T         + +L+  +  L L 
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 175 WNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL 234
             +   E+   L   +      +   N            T+ +L    +      +    
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 235 AIANFSTLTTLDLLYN--QFDNSFVPNWVFGLIQLV------FLDLRRNNFQGPIPEGL- 285
            ++  + L T   L N    +     N    ++QLV      +  +     QG +     
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 286 ----QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
                +L +L    + S+ F          F+ +     + +  +   +   + +     
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNS 401
           +  S   L+  + E                         HLT        L  L L  N 
Sbjct: 329 LDFSNNLLTDTVFENCG----------------------HLT-------ELETLILQMNQ 359

Query: 402 I--VGPIPFSLGHLSTLQFIDLSYNELN--GMNDNWIPPFQLATLGLRHCHLGSRFPSWL 457
           +  +  I      + +LQ +D+S N ++      +      L +L +    L       L
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 458 HSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI----HGQIPNLTNAAQLEV 513
             +  +  LDL  + I  SIP         +  L+++ NQ+     G    LT+   L+ 
Sbjct: 420 PPR--IKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTS---LQK 472

Query: 514 LSLGSNSF 521
           + L +N +
Sbjct: 473 IWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 14/194 (7%)

Query: 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDL 173
               +++  + + +  + V +      +    +L+ S       +    G+L+ L+ L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 174 SWNFLYVENLWWLPG----LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
             N L  + L  +      +  L+ LD+S  ++S         +   SL+ L +S   L 
Sbjct: 356 QMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-GDCSWTKSLLSLNMSSNILT 412

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG-LQNL 288
                 +     +  LDL  N+     +P  V  L  L  L++  N  +  +P+G    L
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKI--KSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRL 467

Query: 289 TSLKHLLLDSNRFN 302
           TSL+ + L +N ++
Sbjct: 468 TSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 59/391 (15%), Positives = 114/391 (29%), Gaps = 49/391 (12%)

Query: 464 NYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSF 521
             +D S +G+   +P ++         +L++S N I     + + + ++L +L +  N  
Sbjct: 3   FLVDRSKNGLI-HVPKDLSQK----TTILNISQNYISELWTSDILSLSKLRILIISHNRI 57

Query: 522 SGALPLIS----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC 577
              L +        L  LD S+N +     H           L+ L L  N     L  C
Sbjct: 58  Q-YLDISVFKFNQELEYLDLSHNKLVKISCH-------PTVNLKHLDLSFNAFD-ALPIC 108

Query: 578 WM--NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTAL-L 632
               N   L  L LS      +  + +  L   + L +             L++     L
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168

Query: 633 TLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLL------PKGLCDLAFLQIVDLA 686
            +    N+    I     +  + + +  ++     +           L     L  + L 
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 687 DNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAE 746
           +   +      I  L    T+   +   ++ Q  L       +                 
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS----------------- 271

Query: 747 YKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESID 806
               L  + I     + F             +   N + +            +     +D
Sbjct: 272 -GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 807 FSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837
           FS N L+  + ++   LT L  L L  N L 
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (304), Expect = 5e-29
 Identities = 62/297 (20%), Positives = 114/297 (38%), Gaps = 19/297 (6%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
                 HL  L+L+ N    V+ P    ++ NLR L L   +   +       LSNL  L
Sbjct: 51  EFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           D+S N + +   +    L  LK L++   +L   S   R  + L SL +L L +C L  +
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSI 167

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           P  A+++   L  L L +     + + ++ F  L +L  L++    +   +        +
Sbjct: 168 PTEALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLS 350
           L  L +      +     +     L  L +S N +       +  L  L+ + L      
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV----G 281

Query: 351 QEISEI-FDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKNLYYLDLSNNSIV 403
            +++ +    F G     L +L + G   +++   +        NL  L L +N + 
Sbjct: 282 GQLAVVEPYAFRGLNY--LRVLNVSGNQLTTLEESV---FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (303), Expect = 7e-29
 Identities = 70/344 (20%), Positives = 128/344 (37%), Gaps = 38/344 (11%)

Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +P  +   +  + LDL  N      +  L    F                      + P 
Sbjct: 26  VPEGI--PTETRLLDLGKN-----RIKTLNQDEF---------------------ASFPH 57

Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNN 276
           L +L L+   +  + P A  N   L TL L  N+     +P  VF GL  L  LD+  N 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENK 115

Query: 277 FQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
               +    Q+L +LK L +  N             N LE L +   +L      +++ L
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175

Query: 337 CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLD 396
             L  + L  + ++  I +    F       L++L +        +T       NL  L 
Sbjct: 176 HGLIVLRLRHLNIN-AIRD--YSFKRL--YRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 397 LSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHCHLGSRFPS 455
           +++ ++      ++ HL  L+F++LSYN ++ +  + +    +L  + L    L    P 
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290

Query: 456 WLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH 499
                 +L  L++S + +T ++    + S   +  L L  N + 
Sbjct: 291 AFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 72/315 (22%), Positives = 116/315 (36%), Gaps = 19/315 (6%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLSWN 176
               LDL  N  + +    F  S  +L  L L+    V  + P    NL NL+ L L  N
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN 90

Query: 177 FLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI 236
            L +  L    GLS L  LD+S   +    D   +   L +L  L +    L ++   A 
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLD--YMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 237 ANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295
           +  ++L  L L       + +P      L  L+ L LR  N         + L  LK L 
Sbjct: 149 SGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA--SLCNLRSVMLSCVKLSQEI 353
           +    +  ++         L SL +++ +L    +  +A   L  LR + LS       I
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLS----YNPI 260

Query: 354 SEIF-DIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGH 412
           S I   +    +   L+ + L G  ++    Y       L  L++S N +          
Sbjct: 261 STIEGSMLHELLR--LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

Query: 413 LSTLQFIDLSYNELN 427
           +  L+ + L  N L 
Sbjct: 319 VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (290), Expect = 3e-27
 Identities = 57/333 (17%), Positives = 120/333 (36%), Gaps = 50/333 (15%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
                 LDL  N I             L+ ++L+ N ++      + P     L      
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-----AVEPGAFNNL------ 79

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LT 506
                        +L  L L  + +   IP   ++  S +  LD+S N+I   + +    
Sbjct: 80  ------------FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ 125

Query: 507 NAAQLEVLSLGSNSFS----GAL-PLISSNLIELDFSNNSIS----GSIFHFICYRAHEL 557
           +   L+ L +G N        A   L  ++L +L     +++     ++ H        L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGL--NSLEQLTLEKCNLTSIPTEALSH--------L 175

Query: 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 617
             L  L LR   +       +     L +L++S+  +   +  +    ++L SL +   N
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 618 LSGTIHS--LKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLC 675
           L+  +    +++   L  L++  N     I   +     R+  + L   +   + P    
Sbjct: 236 LT-AVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 676 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
            L +L++++++ N L+       H++  + TL 
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (251), Expect = 3e-22
 Identities = 85/359 (23%), Positives = 141/359 (39%), Gaps = 50/359 (13%)

Query: 270 LDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV 329
           +   R  F   +PEG+   T  + L L  NR  +   +    F  LE L ++ N +    
Sbjct: 16  VLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 330 IRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQF 389
             +  +L NLR++ L   +L   I     +F+G                           
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPL--GVFTG--------------------------L 103

Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP-FQLATLGLRHCH 448
            NL  LD+S N IV  + +    L  L+ +++  N+L  ++         L  L L  C+
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTN 507
           L S     L     L  L L +  I  +I +  +    ++ VL++S       + PN   
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 508 AAQLEVLSLGSNSFSGALPLIS----SNLIELDFSNNSIS---GSIFHFICYRAHELKKL 560
              L  LS+   + + A+P ++      L  L+ S N IS   GS+ H       EL +L
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH-------ELLRL 274

Query: 561 QFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
           Q + L G  L       +     L +L++S N+ T        S+ +L++L L  N L+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 64/379 (16%), Positives = 114/379 (30%), Gaps = 83/379 (21%)

Query: 462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF 521
               LDL  + I  ++    ++S   +  L+L+ N +                ++   +F
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS---------------AVEPGAF 76

Query: 522 SGALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCW 578
           +        NL  L   +N    I   +F         L  L  L +  N +   L   +
Sbjct: 77  NN-----LFNLRTLGLRSNRLKLIPLGVFT-------GLSNLTKLDISENKIVILLDYMF 124

Query: 579 MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALLTLDVG 637
            +  NL  L++ +N        +   L SL+ L L K NL+     +L +   L+ L + 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRC 697
                  I  +  +R  R+ VL +    +   +         L  + +   NL+      
Sbjct: 185 HLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRII 757
           + +L  +  LN                                          L+   I 
Sbjct: 244 VRHLVYLRFLN------------------------------------------LSYNPIS 261

Query: 758 DFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP 817
               +            L  LQ   L         P +   +  L  ++ S NQL+    
Sbjct: 262 TIEGSMLHE--------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313

Query: 818 QSMSSLTYLNHLNLSNNNL 836
               S+  L  L L +N L
Sbjct: 314 SVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 74/379 (19%), Positives = 126/379 (33%), Gaps = 92/379 (24%)

Query: 466 LDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGA 524
           +         ++P  I         +LDL  N+I                +L  + F+  
Sbjct: 16  VLCHRKRFV-AVPEGIPTE----TRLLDLGKNRIK---------------TLNQDEFASF 55

Query: 525 LPLISSNLIELDFSNNSISGSIFHFICYRA-HELKKLQFLYLRGNFLQGELTDCWMNYQN 583
                 +L EL+ + N +S      +   A + L  L+ L LR N L+      +    N
Sbjct: 56  -----PHLEELELNENIVS-----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105

Query: 584 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI--HSLKNCTALLTLDVGENEF 641
           L  LD+S NK    L      L +L+SL +  N+L   I   +     +L  L + +   
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL 164

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNL 701
             +IPT        ++VL LR    +++       L  L++++++       +       
Sbjct: 165 -TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 702 RAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSK 761
                                                            LNL   +  + 
Sbjct: 224 -------------------------------------------------LNL-TSLSITH 233

Query: 762 NNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESI-GAMRSLESIDFSLNQLSGEIPQS 819
            N +  +P     +L  L+  NLS N  +  I  S+   +  L+ I     QL+  +   
Sbjct: 234 CNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPY 290

Query: 820 M-SSLTYLNHLNLSNNNLT 837
               L YL  LN+S N LT
Sbjct: 291 AFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 2e-13
 Identities = 46/264 (17%), Positives = 76/264 (28%), Gaps = 55/264 (20%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENE 640
              +LDL  N+          S   L+ L L +N +S  +      N   L TL +  N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHN 700
               IP  +    S +  L +  NK   LL     DL  L+ +++ DN+L     R    
Sbjct: 92  LKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS 760
           L ++  L                                           L    +    
Sbjct: 151 LNSLEQLT------------------------------------------LEKCNLTSIP 168

Query: 761 KNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM 820
               S         L  L    L +         S   +  L+ ++ S       +  + 
Sbjct: 169 TEALSH--------LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 821 SSLTYLNHLNLSNNNLTGKIPSST 844
                L  L++++ NLT  +P   
Sbjct: 221 LYGLNLTSLSITHCNLT-AVPYLA 243

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (299), Expect = 8e-29
 Identities = 80/375 (21%), Positives = 137/375 (36%), Gaps = 40/375 (10%)

Query: 135 PRFICSMGNLRYLNLSYTQFVGMIPPQLG------NLSNLQYLDLSWNFLYVENLWWLPG 188
           P + C   NL+Y  + Y   + M    +        L+N + +    + +       L  
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 189 LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLL 248
              ++ L+L+ + + +            ++ KL +    + +LPP    N   LT L L 
Sbjct: 68  FRQVELLNLNDLQIEEIDT--YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 249 YNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPN 307
            N    S +P  +F    +L  L +  NN +    +  Q  TSL++L L SNR  + +  
Sbjct: 126 RNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD- 181

Query: 308 WLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSG 367
            L     L    VS N L      ++A    +  +  S   ++           G V+  
Sbjct: 182 -LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV--------VRGPVNVE 227

Query: 368 LEILVLRG---SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN 424
           L IL L+    +  +      L  +  L  +DLS N +   +      +  L+ + +S N
Sbjct: 228 LTILKLQHNNLTDTAW-----LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 425 ELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSS 484
            L  +N    P   L  L L H HL             L  L L ++ I  ++     S+
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLKL---ST 337

Query: 485 ASQIYVLDLSFNQIH 499
              +  L LS N   
Sbjct: 338 HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (297), Expect = 1e-28
 Identities = 53/318 (16%), Positives = 106/318 (33%), Gaps = 26/318 (8%)

Query: 110 NPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQ 169
               + L +   +    +  + +     + S   +  LNL+  Q   +          +Q
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 170 YLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
            L + +N +          +  L  L L   +LS       + +  P L  L +S   L 
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLE 154

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
            +        ++L  L L  N+   + V   +     L   ++  N         L    
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRL--THVDLSLIP--SLFHANVSYNLLS-----TLAIPI 205

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKL 349
           +++ L    N   + +   +     L  L + +N+L       + +   L  V LS    
Sbjct: 206 AVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLS---- 256

Query: 350 SQEISEI-FDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPF 408
             E+ +I +  F       LE L +  + +   L         L  LDLS+N ++  +  
Sbjct: 257 YNELEKIMYHPFVKM--QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VER 312

Query: 409 SLGHLSTLQFIDLSYNEL 426
           +      L+ + L +N +
Sbjct: 313 NQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 7e-26
 Identities = 74/408 (18%), Positives = 143/408 (35%), Gaps = 78/408 (19%)

Query: 214 TLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDL 272
           TL +   +      +  LP   + +F  +  L+L   Q     +  + F     +  L +
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYM 100

Query: 273 RRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIR 331
             N  +  +P    QN+  L  L+L+ N  +S      +   +L +L +SNN+L+     
Sbjct: 101 GFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE----- 154

Query: 332 SMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKN 391
                                I +  D F    S  L+ L L  + ++      L    +
Sbjct: 155 --------------------RIED--DTFQATTS--LQNLQLSSNRLT---HVDLSLIPS 187

Query: 392 LYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGS 451
           L++ ++S N +      +L     ++ +D S+N +N +        +L  L L+H +L  
Sbjct: 188 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNNLTD 240

Query: 452 RFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQL 511
              +WL +   L  +DLSY+ +   I    +    ++  L +S N++            L
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 297

Query: 512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ 571
           +VL L  N                      +  +             +L+ LYL  N + 
Sbjct: 298 KVLDLSHNHLL------------------HVERNQPQ--------FDRLENLYLDHNSIV 331

Query: 572 GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
                    +  L  L LS+N +  N   +L    ++    +   +  
Sbjct: 332 TLKLS---THHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 2e-24
 Identities = 69/346 (19%), Positives = 136/346 (39%), Gaps = 20/346 (5%)

Query: 347 VKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPI 406
           V +  +  +++  F     +  +I+  + S++       L  F+ +  L+L++  I    
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 407 PFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHCHLGSRFPSWLHSQKHLNY 465
            ++  +  T+Q + + +N +  +  +       L  L L    L S      H+   L  
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGAL 525
           L +S + +   I +  + + + +  L LS N++   +  L+    L   ++  N  S   
Sbjct: 146 LSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLLSTLA 202

Query: 526 PLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLM 585
             I   + ELD S+NSI+  +      R     +L  L L+ N L    T   +NY  L+
Sbjct: 203 IPI--AVEELDASHNSIN-VV------RGPVNVELTILKLQHNNLTD--TAWLLNYPGLV 251

Query: 586 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENI 645
            +DLS N+    +      +  L+ L++  N L       +    L  LD+  N    ++
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHV 310

Query: 646 PTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
                + F R+  L L  N   +L          L+ + L+ N+  
Sbjct: 311 ERNQPQ-FDRLENLYLDHNSIVTLKLST---HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.3 bits (222), Expect = 6e-19
 Identities = 70/417 (16%), Positives = 127/417 (30%), Gaps = 109/417 (26%)

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
            +   +    S +   +P     S  Q+ +L+L+  QI                 + + +
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---------------EIDTYA 88

Query: 521 FSGALPLISSNLIELDFSNNSIS---GSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC 577
           F+ A       + +L    N+I      +F         +  L  L L  N L       
Sbjct: 89  FAYA-----HTIQKLYMGFNAIRYLPPHVFQ-------NVPLLTVLVLERNDLSSLPRGI 136

Query: 578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALLTLDV 636
           + N   L  L +SNN        +  +  SLQ+L L  N L+   +  + +   L   +V
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANV 193

Query: 637 GENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPR 696
             N     +   I      +  L    N  + +      +L  L    L  NN       
Sbjct: 194 SYNLL-STLAIPI-----AVEELDASHNSINVVRGPVNVELTIL---KLQHNN------- 237

Query: 697 CIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRI 756
            + +   ++                                                +  
Sbjct: 238 -LTDTAWLLNYPG--------------------------------------------LVE 252

Query: 757 IDFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815
           +D S N    KI       ++ L+   +SNN     +      + +L+ +D S N L   
Sbjct: 253 VDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 816 IPQSMSSLTYLNHLNLSNNNLTGKIPSST--QLQSFDASSYAGNDL---CGAPLPRN 867
           + ++      L +L L +N++   +  ST   L++   S    ND        L RN
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLS---HNDWDCNSLRALFRN 362

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 41/311 (13%), Positives = 99/311 (31%), Gaps = 43/311 (13%)

Query: 528 ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMIL 587
           +  + +  D   +  +  ++         L   + +  + + ++        +++ + +L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALLTLDVGENEFVENIP 646
           +L++ +       +     ++Q L++  N +     H  +N   L  L +  N+   ++P
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP 133

Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 706
             I     ++  L + +N    +          LQ + L+ N L+      I +L     
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH-AN 192

Query: 707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSG 766
           ++ +    +     +                                   +D S N+ + 
Sbjct: 193 VSYNLLSTLAIPIAV---------------------------------EELDASHNSINV 219

Query: 767 KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYL 826
              +       L    L +N  T      +     L  +D S N+L   +      +  L
Sbjct: 220 ---VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 827 NHLNLSNNNLT 837
             L +SNN L 
Sbjct: 275 ERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 32/165 (19%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             LL+   L  +DLSYN+ + +    F   M  L  L +S  + V  +      +  L+ 
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           LDLS N     +L  +                               L  L L    +  
Sbjct: 300 LDLSHN-----HLLHVERNQP----------------------QFDRLENLYLDHNSIVT 332

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN 275
           L     +   TL  L L +N +D + +      + +    D  ++
Sbjct: 333 LKL---STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 751 LNLVRIIDFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSL 809
           LN  +I+ F  +    K+P  +  + + ++  NL++         +     +++ +    
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 810 NQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSST 844
           N +    P    ++  L  L L  N+L+  +P   
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 136

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 109 VNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNL 168
           +N     +  L  LDLS+N      + R       L  L L +   V +   +L     L
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTL 341

Query: 169 QYLDLSWNFL-YVENLWWLPGLSFLKDLDL 197
           + L LS N             ++     D 
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  120 bits (303), Expect = 1e-28
 Identities = 90/476 (18%), Positives = 159/476 (33%), Gaps = 46/476 (9%)

Query: 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQ 251
            K L LS  ++S+        + L  L  LRLS  ++  L          L  LD+ +N+
Sbjct: 54  TKALSLSQNSISELRM--PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 252 FDN-SFVPNWVFGLIQLVFLDLRRNNFQG-PIPEGLQNLTSLKHLLLDSNRFNSSIPNWL 309
             N S  P     +  L  LDL  N+F   P+ +   NLT L  L L + +F   +    
Sbjct: 112 LQNISCCP-----MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLDLLP 165

Query: 310 YRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI--FDIFSGCVSSG 367
                L  + +   S   +      SL    + +L  V     +  +      +      
Sbjct: 166 VAHLHLSCILLDLVSYHIKGG-ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 368 LEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELN 427
           L  + L   +    +T+     +    L+++   I      S+          + Y  + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 428 GMNDNWIPPFQ-----------LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476
            +        +           L    +++        +       +N   LS S     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-F 343

Query: 477 IPNIFWSSASQIYVLDLSFNQI----HGQIPNLTNAAQLEVLSLGSNSFSGALPLISS-- 530
           I  +   S S    L+ + N            L     L+ L L  N        ++   
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR---LQTLILQRNGLK-NFFKVALMT 399

Query: 531 ----NLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMI 586
               +L  LD S NS++   +   C      + +  L L  N L G +  C      + +
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTC---AWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNL-SGTIHSLKNCTALLTLDVGENEF 641
           LDL NN+   ++P  +  L +LQ L++  N L S         T+L  + + +N +
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 41/218 (18%), Positives = 73/218 (33%), Gaps = 16/218 (7%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
           S   LK L    +    F   +   +      +    LS +    +      + S+  +L
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALY-SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           + + N            L  L+ L L    L        V     ++  L      L+ L
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK---VALMTKNMSSLETLDVSLNSL 415

Query: 232 PPLAIANF----STLTTLDLLYNQFDNSFVPNWVFGLI--QLVFLDLRRNNFQGPIPEGL 285
              A         ++  L+L  N    S     VF  +  ++  LDL  N     IP+ +
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGS-----VFRCLPPKVKVLDLHNNRIMS-IPKDV 469

Query: 286 QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNN 323
            +L +L+ L + SN+  S       R   L+ + + +N
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 73/463 (15%), Positives = 148/463 (31%), Gaps = 85/463 (18%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
           +  L +LDLS+NDF  + + +   ++  L +L LS  +F      +  +L  + +L LS 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF------RQLDLLPVAHLHLSC 173

Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
             L + +      +   +   L   N +         +     V + ++      L  + 
Sbjct: 174 ILLDLVSYH----IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 236 IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295
           + + +    +  L        + N     I+  +    +                +++L 
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF-------QFFWPRPVEYLN 282

Query: 296 LDSNRFNSSIP--NWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEI 353
           + +      I    + Y    L+SL + +   Q                           
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQ---------------------VFLFSK 321

Query: 354 SEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413
             ++ +F     + + I +L  S              +  +L+ + N     +      L
Sbjct: 322 EALYSVF-----AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376

Query: 414 STLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGI 473
             LQ + L  N              L            +      +   L  LD+S + +
Sbjct: 377 KRLQTLILQRN-------------GLKNF--------FKVALMTKNMSSLETLDVSLNSL 415

Query: 474 TGSIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTNAAQLEVLSLGSNSFS----GALPLI 528
                +   + A  I VL+LS N + G +   L    +++VL L +N           L 
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHL- 472

Query: 529 SSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGN 568
              L EL+ ++N   S+   +F         L  LQ+++L  N
Sbjct: 473 -QALQELNVASNQLKSVPDGVF-------DRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 6e-15
 Identities = 76/468 (16%), Positives = 163/468 (34%), Gaps = 61/468 (13%)

Query: 394 YLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP--F----QLATLGLRHC 447
            L LS NSI       +  LS L+ + LS+N +       +    F     L  L + H 
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-----LDFHVFLFNQDLEYLDVSHN 110

Query: 448 HLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTN 507
            L +     +     L +LDLS++          + + +++  L LS  +          
Sbjct: 111 RLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 508 AAQLEVLSLGSNSFS------GALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
              L  + L   S+        +L + ++ ++ L F  NS+  S+   +   A    +L 
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF-SVQVNMSVNALGHLQLS 226

Query: 562 FLYLRGNFLQGELTDCWMNYQNLMI--LDLSNNKFTGNLPISLGSLI---SLQSLHLRKN 616
            + L     Q  +T      +   +  + L + + T    + L        ++ L++   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 617 NLSGTI------HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLL 670
            ++  I      +S     +L+   V    F       +   F+ M + +L  +    + 
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 671 PKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTA 730
                  +    ++   N  +  V +    L     L +   +    +           A
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL---KRLQTLILQRNGLKNF------FKVA 396

Query: 731 MLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNF-SGKIPLEVTNLKALQSFNLSNNFFT 789
           ++ ++               ++ +  +D S N+  S          +++   NLS+N  T
Sbjct: 397 LMTKN---------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 790 GRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837
           G +   +     ++ +D   N++   IP+ ++ L  L  LN+++N L 
Sbjct: 442 GSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 61/331 (18%), Positives = 116/331 (35%), Gaps = 17/331 (5%)

Query: 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSN 167
           +++   +   HLS + L    +           + N   L+L +            +++ 
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 168 LQYLDLSWNFLYVEN-------LWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVK 220
           L +L LS   L  EN       L  L     L ++ L ++  +            P  V+
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 221 -LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN---SFVPNWVF-GLIQLVFLDLRRN 275
            L +    +          +S      L+     N    F    ++    ++    L  +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 276 NFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMAS 335
           +          + +S   L    N F  S+        RL++L +  N L+    +    
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALM 398

Query: 336 LCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYL 395
             N+ S+    V L+   S  +D       S + +L L  + ++G +   L     +  L
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAES-ILVLNLSSNMLTGSVFRCLPP--KVKVL 455

Query: 396 DLSNNSIVGPIPFSLGHLSTLQFIDLSYNEL 426
           DL NN I+  IP  + HL  LQ ++++ N+L
Sbjct: 456 DLHNNRIMS-IPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 66/381 (17%), Positives = 112/381 (29%), Gaps = 67/381 (17%)

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNN---SISGSI 546
            L LS N I                 L     S       S L  L  S+N   S+   +
Sbjct: 56  ALSLSQNSIS---------------ELRMPDISFL-----SELRVLRLSHNRIRSLDFHV 95

Query: 547 FHFICYRAHELKKLQFLYLRGNFLQ----GELTDCWMNYQNLMILDLSNNKFTGNLPIS- 601
           F F        + L++L +  N LQ      +        +L  LDLS N F   LP+  
Sbjct: 96  FLF-------NQDLEYLDVSHNRLQNISCCPMA-------SLRHLDLSFNDFD-VLPVCK 140

Query: 602 -LGSLISLQSLHLRKNNLS----GTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRM 656
             G+L  L  L L            +  L    + + LD+            +    + +
Sbjct: 141 EFGNLTKLTFLGLSAAKFRQLDLLPVAHLH--LSCILLDLVSYHIKGGETESLQIPNTTV 198

Query: 657 VVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQ 716
           + L+   N   S+       +  L  + L++  L+ E  + +    + +T          
Sbjct: 199 LHLVFHPNSLFSVQV--NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN--- 253

Query: 717 YQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLK 776
               +      +T             R  EY  I NL      ++     +     T LK
Sbjct: 254 ----VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL----TITERIDREEFTYSETALK 305

Query: 777 ALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNL 836
           +L   ++ N  F             +     S++           S +    LN + N  
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 837 T----GKIPSSTQLQSFDASS 853
           T        +  +LQ+     
Sbjct: 366 TDSVFQGCSTLKRLQTLILQR 386

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 66/395 (16%), Positives = 131/395 (33%), Gaps = 50/395 (12%)

Query: 462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-----NLTNAAQLEVLSL 516
               L LS + I+  +     S  S++ VL LS N+I   +         +   LE L +
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD---LEYLDV 107

Query: 517 GSNSFSGALPLIS-SNLIELDFSNNSIS----GSIFHFICYRAHELKKLQFLYLRGNFLQ 571
             N     +     ++L  LD S N          F         L KL FL L     +
Sbjct: 108 SHNRLQ-NISCCPMASLRHLDLSFNDFDVLPVCKEFG-------NLTKLTFLGLSAAKFR 159

Query: 572 -GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSL-ISLQSLHLRKNNLSGTIHSLKNCT 629
             +L      + + ++LDL +    G    SL     ++  L    N+L     ++    
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 630 ALLTLDVGENEFVEN----IPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDL 685
            L  L +   +  +     + T++ E      +L +      +     +    F     +
Sbjct: 220 -LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 686 ADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAA 745
              N+              +T+       I  +   Y+  A  + M+      V      
Sbjct: 279 EYLNIYN------------LTITER----IDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 746 EYKCILNLVRIIDFSKNNFSGKIPLEVTN-LKALQSFNLSNNFFTGRIPESIGAMRSLES 804
               +   + I   S ++ +  I +       +    N + N FT  + +    ++ L++
Sbjct: 323 ALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 805 IDFSLNQLS--GEIPQSMSSLTYLNHLNLSNNNLT 837
           +    N L    ++     +++ L  L++S N+L 
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFI-CSMGNLRYLNLSYTQFVGMIPPQL-GNLSNLQYLDL 173
           LK L  L L  N  +       +  +M +L  L++S          +      ++  L+L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
           S N L       LP    +K LDL    +      +     L +L +L ++  QL  +P 
Sbjct: 436 SSNMLTGSVFRCLPPK--VKVLDLHNNRIMSIPKDV---THLQALQELNVASNQLKSVPD 490

Query: 234 LAIANFSTLTTLDLLYNQFD 253
                 ++L  + L  N +D
Sbjct: 491 GVFDRLTSLQYIWLHDNPWD 510

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (302), Expect = 2e-28
 Identities = 80/386 (20%), Positives = 138/386 (35%), Gaps = 42/386 (10%)

Query: 124 LSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQL------GNLSNLQYLDLSWNF 177
             YN     + P + C   NL+Y  + Y   + M    +        L+N + +    + 
Sbjct: 5   QRYNVKP--RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62

Query: 178 LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIA 237
           +       L     ++ L+L+ + + +            ++ KL +    + +LPP    
Sbjct: 63  MRKLPAALLDSFRQVELLNLNDLQIEEIDT--YAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 238 NFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLL 296
           N   LT L L  N    S +P  +F    +L  L +  NN +    +  Q  TSL++L L
Sbjct: 121 NVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI 356
            SNR  + +   L     L    VS N L      ++A    +  +  S   ++     +
Sbjct: 179 SSNRL-THVDLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPV 230

Query: 357 FDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413
                      L IL L+    +  +      L  +  L  +DLS N +   +      +
Sbjct: 231 N--------VELTILKLQHNNLTDTAW-----LLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 414 STLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGI 473
             L+ + +S N L  +N    P   L  L L H HL             L  L L ++ I
Sbjct: 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSI 336

Query: 474 TGSIPNIFWSSASQIYVLDLSFNQIH 499
             ++     S+   +  L LS N   
Sbjct: 337 V-TLKL---STHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (294), Expect = 2e-27
 Identities = 57/338 (16%), Positives = 112/338 (33%), Gaps = 28/338 (8%)

Query: 110 NPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQ 169
               + L +   +    +  + +     + S   +  LNL+  Q   +          +Q
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 170 YLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
            L + +N +          +  L  L L   +LS       + +  P L  L +S   L 
Sbjct: 103 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLE 160

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
            +        ++L  L L  N+   + V   +     L   ++  N         L    
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRL--THVDLSLIP--SLFHANVSYNLLS-----TLAIPI 211

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKL 349
           +++ L    N   + +   +     L  L + +N+L       + +   L  V LS    
Sbjct: 212 AVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLS---- 262

Query: 350 SQEISEI-FDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPF 408
             E+ +I +  F       LE L +  + +   L         L  LDLS+N ++  +  
Sbjct: 263 YNELEKIMYHPFVKM--QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VER 318

Query: 409 SLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRH 446
           +      L+ + L +N +  +  +      L  L L H
Sbjct: 319 NQPQFDRLENLYLDHNSIVTLKLSTHH--TLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (268), Expect = 4e-24
 Identities = 88/498 (17%), Positives = 177/498 (35%), Gaps = 39/498 (7%)

Query: 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI 402
           +   V +  +  +++  F     +  +I+  + S++       L  F+ +  L+L++  I
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 403 VGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHCHLGSRFPSWLHSQK 461
                ++  +  T+Q + + +N +  +  +       L  L L    L S      H+  
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147

Query: 462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF 521
            L  L +S + +   I +  + + + +  L LS N++   +  L+    L   ++  N  
Sbjct: 148 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFHANVSYNLL 204

Query: 522 SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNY 581
           S  L  I   + ELD S+NSI+  +      R     +L  L L+ N L    T   +NY
Sbjct: 205 S-TLA-IPIAVEELDASHNSIN-VV------RGPVNVELTILKLQHNNLTD--TAWLLNY 253

Query: 582 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEF 641
             L+ +DLS N+    +      +  L+ L++  N L       +    L  LD+  N  
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNL 701
             ++     + F R+  L L  N   +L          L+ + L+ N+       C    
Sbjct: 314 -LHVERNQPQ-FDRLENLYLDHNSIVTLKLST---HHTLKNLTLSHNDWD-----CNSLR 363

Query: 702 RAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSK 761
                +   A        +  A +       LE  L   +        +L  + +    +
Sbjct: 364 ALFRNVARPA--------VDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVE 415

Query: 762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLE----SIDFSLNQLSGEIP 817
                +     +    + S    +++ T +    +     LE     +   + QL+ E  
Sbjct: 416 K--VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQI 473

Query: 818 QSMSSLTYLNHLNLSNNN 835
           Q    L  L+    +N  
Sbjct: 474 QQEQLLQGLHAEIDTNLR 491

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 8e-18
 Identities = 73/432 (16%), Positives = 133/432 (30%), Gaps = 107/432 (24%)

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
            +   +    S +   +P     S  Q+ +L+L+  QI                 + + +
Sbjct: 51  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE---------------EIDTYA 94

Query: 521 FSGALPLISSNLIELDFSNNSIS---GSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC 577
           F+ A       + +L    N+I      +F         +  L  L L  N L       
Sbjct: 95  FAYA-----HTIQKLYMGFNAIRYLPPHVFQ-------NVPLLTVLVLERNDLSSLPRGI 142

Query: 578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG 637
           + N   L  L +SNN        +  +  SLQ+L L  N L+              +D+ 
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------------HVDLS 189

Query: 638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRC 697
                             +    +  N   +L          ++ +D + N+++      
Sbjct: 190 --------------LIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV 230

Query: 698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRII 757
              L     L             L  +    TA LL                    +  +
Sbjct: 231 NVELT---ILK------------LQHNNLTDTAWLLN----------------YPGLVEV 259

Query: 758 DFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEI 816
           D S N    KI       ++ L+   +SNN     +      + +L+ +D S N L   +
Sbjct: 260 DLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 817 PQSMSSLTYLNHLNLSNNNLTGKIPSST--QLQSFDASSYAGNDL---CGAPLPRNCSEH 871
            ++      L +L L +N++   +  ST   L++   S    ND        L RN +  
Sbjct: 317 ERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLS---HNDWDCNSLRALFRNVARP 372

Query: 872 VSTPEDENGDED 883
                D++   D
Sbjct: 373 AVDDADQHCKID 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.3 bits (190), Expect = 1e-14
 Identities = 46/311 (14%), Positives = 102/311 (32%), Gaps = 42/311 (13%)

Query: 529 SSNLIELDFSNNSISGSIFH-FICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMIL 587
           S+   +  F +  I       +  +    L   + +  + + ++        +++ + +L
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALLTLDVGENEFVENIP 646
           +L++ +       +     ++Q L++  N +     H  +N   L  L +  N+   ++P
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP 139

Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 706
             I     ++  L + +N    +          LQ + L+ N L+  V   +  + ++  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 196

Query: 707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSG 766
            N      + Y  L   S       +                        +D S N+ + 
Sbjct: 197 AN------VSYNLL---STLAIPIAV----------------------EELDASHNSINV 225

Query: 767 KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYL 826
              +       L    L +N  T      +     L  +D S N+L   +      +  L
Sbjct: 226 ---VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 827 NHLNLSNNNLT 837
             L +SNN L 
Sbjct: 281 ERLYISNNRLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 7e-11
 Identities = 40/246 (16%), Positives = 78/246 (31%), Gaps = 32/246 (13%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             LL+   L  +DLSYN+ + +    F+  M  L  L +S  + V  +      +  L+ 
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           LDLS N     +L  +                               L  L L    +  
Sbjct: 306 LDLSHN-----HLLHVERNQP----------------------QFDRLENLYLDHNSIVT 338

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           L     +   TL  L L +N +D + +      + +    D  ++       E       
Sbjct: 339 LKL---STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKE 395

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLS 350
                LD      ++ + + +  R +    + +++      S          +    +L 
Sbjct: 396 SDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLE 455

Query: 351 QEISEI 356
            E++E+
Sbjct: 456 AEVNEL 461

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 8/150 (5%)

Query: 109 VNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNL 168
           +N     +  L  LDLS+N      + R       L  L L +   V +   +L     L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTL 347

Query: 169 QYLDLSWNFL-YVENLWWLPGLSFLK--DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
           + L LS N             ++     D D       +    L    +    +   L  
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQY 407

Query: 226 CQLHHLPPLAIANFSTLTTLDLLYNQFDNS 255
             L  +           +  D + +    S
Sbjct: 408 IALTSVVEKVQRAQGRCSATDTINSVQSLS 437

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  118 bits (297), Expect = 3e-28
 Identities = 88/440 (20%), Positives = 136/440 (30%), Gaps = 79/440 (17%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
           ++ Y++LS      +       L +LQ+L +      +     +   +F           
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV----IRNNTFRG--------- 77

Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
                       L SL+ L+L   Q   L   A    + L  L L     D + +    F
Sbjct: 78  ------------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

Query: 263 -GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGV 320
             L  L  L LR NN +   P     N+     L L  N+  S     L  F       +
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 321 SNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG 380
             +S+                  L  +       E         S  +  L L G+    
Sbjct: 186 RLSSIT-----------------LQDMNEYWLGWEKCGNPFKNTS--ITTLDLSGNGFKE 226

Query: 381 HLT---YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF 437
            +    +       +  L LSN+  +G             F D       G+  +     
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMG------SSFGHTNFKDPDNFTFKGLEAS----- 275

Query: 438 QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ 497
            + T  L    + +   S       L  L L+ + I   I +  +   + +  L+LS N 
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF 334

Query: 498 IHGQIPN--LTNAAQLEVLSLGSNSFSGALPLIS----SNLIELDFSNN---SISGSIFH 548
           + G I +    N  +LEVL L  N    AL   S     NL EL    N   S+   IF 
Sbjct: 335 L-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 549 FICYRAHELKKLQFLYLRGN 568
                   L  LQ ++L  N
Sbjct: 393 R-------LTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (285), Expect = 1e-26
 Identities = 76/428 (17%), Positives = 144/428 (33%), Gaps = 75/428 (17%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRR 274
             +  + LS   +  L   + +    L  L +           N  F GL  L+ L L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLDY 88

Query: 275 NNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSI--PNWLYRFNRLESLGVSNNSLQGRVIR 331
           N F   +  G    L +L+ L L     + ++   N+      LE L + +N+++   I+
Sbjct: 89  NQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK--KIQ 145

Query: 332 SMASLCNLRSVMLSCVKLSQ-EISEI-FDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQF 389
             +   N+R      + L+  ++  I  +           +L L                
Sbjct: 146 PASFFLNMRR--FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS--------------- 188

Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELN----GMNDNWIPPFQLATLGLR 445
            ++   D++   +      +    +++  +DLS N           + I   ++ +L L 
Sbjct: 189 -SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 446 HCHLGSRFPS------------WLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDL 493
           + +                          +   DLS S I  ++    +S  + +  L L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL 306

Query: 494 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNN---SISGSIFHFI 550
           + N+I+                +  N+F G      ++L++L+ S N   SI   +F   
Sbjct: 307 AQNEIN---------------KIDDNAFWGL-----THLLKLNLSQNFLGSIDSRMF--- 343

Query: 551 CYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 610
                 L KL+ L L  N ++      ++   NL  L L  N+           L SLQ 
Sbjct: 344 ----ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399

Query: 611 LHLRKNNL 618
           + L  N  
Sbjct: 400 IWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  106 bits (267), Expect = 2e-24
 Identities = 83/475 (17%), Positives = 145/475 (30%), Gaps = 93/475 (19%)

Query: 224 SRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIP 282
               LH +P L     + +  +DL  N    + +    F  L  L FL + +      I 
Sbjct: 18  INRGLHQVPEL----PAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIR 71

Query: 283 EGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA--SLCNL 339
               + L+SL  L LD N+F             LE L ++  +L G V+       L +L
Sbjct: 72  NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131

Query: 340 RSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSN 399
             ++L    + +       I        +                     +  + LDL+ 
Sbjct: 132 EMLVLRDNNIKK-------IQPASFFLNM---------------------RRFHVLDLTF 163

Query: 400 NSI--VGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWL 457
           N +  +               + LS   L  MN+ W               LG       
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW---------------LGWEKCGNP 208

Query: 458 HSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLG 517
                +  LDLS +G   S+   F+ + +   +  L  +  +    +             
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---HTNFKDPD 265

Query: 518 SNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC 577
           + +F G   L +S +   D S + I  ++   +         L+ L L  N +     + 
Sbjct: 266 NFTFKG---LEASGVKTCDLSKSKIF-ALLKSVF---SHFTDLEQLTLAQNEINKIDDNA 318

Query: 578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLD 635
           +    +L+ L+LS N           +L  L+ L L  N++   +   S      L  L 
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELA 377

Query: 636 VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690
                                    L +N+  S+       L  LQ + L  N  
Sbjct: 378 -------------------------LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 71/400 (17%), Positives = 122/400 (30%), Gaps = 60/400 (15%)

Query: 467 DLSYSGITGSIPNIFWSSASQIYVLDLSFNQI----HGQIPNLTNAAQLEVLSLGSNSFS 522
                G+   +P +       +  +DLS N I          L +   L+ L +   +  
Sbjct: 16  ICINRGLH-QVPELPAH----VNYVDLSLNSIAELNETSFSRLQD---LQFLKVEQQTPG 67

Query: 523 GALPLIS----SNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQGEL- 574
             +   +    S+LI L    N    +    F+        L  L+ L L    L G + 
Sbjct: 68  LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN-------GLANLEVLTLTQCNLDGAVL 120

Query: 575 -TDCWMNYQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLS----GTIHSLKNC 628
             + +    +L +L L +N      P S   ++     L L  N +       + + +  
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG- 179

Query: 629 TALLTLDVGENEFVENIPTWIGE-------RFSRMVVLILRSNKFHSLLPKGLCD-LAFL 680
                L +      +    W+G        + + +  L L  N F   + K   D +A  
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 681 QIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVM 740
           +I  L  +N         H         +  G           S++     LL+      
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSVFSH- 297

Query: 741 KGRAAEYKCILNLVRIIDFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESI-GA 798
                        +  +  ++N  + KI       L  L   NLS NF    I   +   
Sbjct: 298 ----------FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFEN 345

Query: 799 MRSLESIDFSLNQLSGEIPQSM-SSLTYLNHLNLSNNNLT 837
           +  LE +D S N +   +       L  L  L L  N L 
Sbjct: 346 LDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.2 bits (198), Expect = 9e-16
 Identities = 44/261 (16%), Positives = 84/261 (32%), Gaps = 52/261 (19%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQ--------FVGMIPPQLGNLS 166
            L  L  L L  N+ + +Q   F  +M     L+L++ +         +         L 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 167 --------------------------NLQYLDLSWNFLY---VENLWWLPGLSFLKDL-- 195
                                     ++  LDLS N       +  +     + ++ L  
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 196 --------DLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDL 247
                      + N     ++         +    LS+ ++  L     ++F+ L  L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 248 LYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSI 305
             N+   + + +  F GL  L+ L+L +N     I   + +NL  L+ L L  N   +  
Sbjct: 307 AQNEI--NKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALG 363

Query: 306 PNWLYRFNRLESLGVSNNSLQ 326
                    L+ L +  N L+
Sbjct: 364 DQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.9 bits (192), Expect = 4e-15
 Identities = 52/231 (22%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 96  QSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFV 155
             +      L  +   +      ++ LDLS N F+     RF  ++   +  +L  +   
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 156 GMIPPQLGN--------------LSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVN 201
            M                      S ++  DLS + ++          + L+ L L+   
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV 261
           ++K  D       L  L+KL LS+  L  +      N   L  LDL YN      + +  
Sbjct: 311 INKIDD--NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI--RALGDQS 366

Query: 262 F-GLIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLY 310
           F GL  L  L L  N  +  +P+G    LTSL+ + L +N ++ S P   Y
Sbjct: 367 FLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 6e-15
 Identities = 62/336 (18%), Positives = 100/336 (29%), Gaps = 59/336 (17%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFI-CSMGNLRYLNLSYTQFVGMIP-PQLGNLSNLQYLDL 173
           L +L  L L+  +  G  +       + +L  L L       + P     N+     LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 174 SWNFLYV--ENLWWLPGLSFLKDLDLSYVNLSKAS----DWLRVTN--TLPSLVKLRLSR 225
           ++N +    E             L LS + L   +     W +  N     S+  L LS 
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 226 CQLHHLPPLAIANFSTLTTLDLL-------------YNQFDNSFVPNWVFGLI---QLVF 269
                       +    T +  L             +  F +    N+ F  +    +  
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD--PDNFTFKGLEASGVKT 279

Query: 270 LDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGR 328
            DL ++     + + +  + T L+ L L  N  N    N  +    L  L +S N L   
Sbjct: 280 CDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338

Query: 329 VIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQ 388
             R   +L  L  + LS   +     + F                        L      
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFL----------------------GLP----- 371

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN 424
             NL  L L  N +          L++LQ I L  N
Sbjct: 372 --NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.9 bits (179), Expect = 2e-13
 Identities = 69/409 (16%), Positives = 135/409 (33%), Gaps = 81/409 (19%)

Query: 434 IPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDL 493
           +P   +  + L    +     +     + L +L +        I N  +   S + +L L
Sbjct: 28  LPA-HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 494 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYR 553
            +NQ                  L + +F+G      +NL  L  +  ++ G++     ++
Sbjct: 87  DYNQFL---------------QLETGAFNGL-----ANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 554 AHELKKLQFLYLRGNFLQG-ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 612
              L  L+ L LR N ++  +    ++N +   +LDL+ NK      I    L++ Q  H
Sbjct: 127 --PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS---ICEEDLLNFQGKH 181

Query: 613 LRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK 672
                L        +   L  ++     + +    +   + + +  L L  N F   + K
Sbjct: 182 FTLLRL--------SSITLQDMNEYWLGWEKCGNPF---KNTSITTLDLSGNGFKESMAK 230

Query: 673 GLCD-LAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAM 731
              D +A  +I  L  +N         H         +  G                   
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE----------------- 273

Query: 732 LLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTG 790
                               + V+  D SK+     +   V ++   L+   L+ N    
Sbjct: 274 -------------------ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN- 312

Query: 791 RIPESI-GAMRSLESIDFSLNQLSGEIPQSM-SSLTYLNHLNLSNNNLT 837
           +I ++    +  L  ++ S N L   I   M  +L  L  L+LS N++ 
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 44/284 (15%), Positives = 87/284 (30%), Gaps = 53/284 (18%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENE 640
           ++  +DLS N        S   L  LQ L + +      I +   +  ++L+ L +  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSL-LPKGL-CDLAFLQIVDLADNNLSGEVPRCI 698
           F   + T      + + VL L         L       L  L+++ L DNN+    P   
Sbjct: 91  F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 699 -HNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRII 757
             N+R    L+                                          L   ++ 
Sbjct: 150 FLNMRRFHVLD------------------------------------------LTFNKVK 167

Query: 758 DFSKNNFSG--KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815
              + +          +  L ++   +++  +       +     S+ ++D S N     
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 816 IPQSMSSL---TYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAG 856
           + +        T +  L LSN+   G     T  +  D  ++ G
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (289), Expect = 3e-28
 Identities = 56/311 (18%), Positives = 98/311 (31%), Gaps = 28/311 (9%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
                 ++  LDLS N    +     +     L  LNLS           L +LS L+ L
Sbjct: 29  LRQSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTL 85

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           DL+ N++       L     ++ L  +  N+S+ S      +       + L+  ++  L
Sbjct: 86  DLNNNYVQE-----LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITML 135

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
             L     S +  LDL  N+ D             L  L+L+ N     +   +     L
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKL 193

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQ 351
           K L L SN+  + +         +  + + NN L   + +++    NL    L       
Sbjct: 194 KTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251

Query: 352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLG 411
                F       S    +  +   +V   LT +  +   +  L          +P    
Sbjct: 252 GTLRDF------FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 412 ----HLSTLQF 418
                L     
Sbjct: 305 DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (266), Expect = 4e-25
 Identities = 49/295 (16%), Positives = 95/295 (32%), Gaps = 47/295 (15%)

Query: 134 IPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK 193
           I     +    +   ++ +     +     +  N++ LDLS N L   +   L   + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD 253
            L+LS   L +  D      +L +L  L L+   +  L         ++ TL    N   
Sbjct: 62  LLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNI- 111

Query: 254 NSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNS-SIPNWLYRF 312
            S V            + L  N             + +++L L  N  ++ +        
Sbjct: 112 -SRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 313 NRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILV 372
           + LE L +  N +    ++       L+++ LS  KL+                      
Sbjct: 169 DTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA---------------------- 204

Query: 373 LRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELN 427
                    +  +      + ++ L NN +V  I  +L     L+  DL  N  +
Sbjct: 205 --------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (258), Expect = 4e-24
 Identities = 68/379 (17%), Positives = 128/379 (33%), Gaps = 73/379 (19%)

Query: 264 LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNN 323
             +     +  ++ +  +    Q+  ++K L L  N  +      L  F +LE L +S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 324 SLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLT 383
            L       + SL  LR++ L+    +  + E+       V   +E L    +++S    
Sbjct: 69  VLYE--TLDLESLSTLRTLDLN----NNYVQELL------VGPSIETLHAANNNIS---R 113

Query: 384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG 443
               + +    + L+NN I        G  S +Q++DL  NE++ +N             
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------- 160

Query: 444 LRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP 503
                    F     S   L +L+L Y+ I      + ++    +  LDLS N++    P
Sbjct: 161 ---------FAELAASSDTLEHLNLQYNFIYDVKGQVVFAK---LKTLDLSSNKLAFMGP 208

Query: 504 NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563
              +AA +  +SL +N                      I  ++           + L+  
Sbjct: 209 EFQSAAGVTWISLRNNKLV------------------LIEKALRF--------SQNLEHF 242

Query: 564 YLRGNFLQ-GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI 622
            LRGN    G L D +   Q +  +     K          ++ +L              
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY----GAY--CC 296

Query: 623 HSLKNCTALLTLDVGENEF 641
             L    A   + +G +  
Sbjct: 297 EDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 1e-23
 Identities = 47/303 (15%), Positives = 100/303 (33%), Gaps = 40/303 (13%)

Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHL 449
                  ++++S+   +         ++ +DLS N L+      I    LA         
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-----ISAADLAPF------- 57

Query: 450 GSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAA 509
                        L  L+LS + +     ++   S S +  LDL+ N +  ++    +  
Sbjct: 58  -----------TKLELLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYVQ-ELLVGPS-- 100

Query: 510 QLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNF 569
            +E L   +N+ S            +  +NN I+               ++Q+L L+ N 
Sbjct: 101 -IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC----RSRVQYLDLKLNE 155

Query: 570 LQG-ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNC 628
           +      +   +   L  L+L  N    ++         L++L L  N L+      ++ 
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 629 TALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN 688
             +  + +  N+    I   +      +    LR N FH    +        ++  +A  
Sbjct: 214 AGVTWISLRNNKL-VLIEKALRF-SQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQ 270

Query: 689 NLS 691
            + 
Sbjct: 271 TVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 42/281 (14%), Positives = 86/281 (30%), Gaps = 39/281 (13%)

Query: 557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 616
             + +   +  + L+  L     +  N+  LDLS N  +      L     L+ L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 617 NLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD 676
            L      L++ + L TLD+  N   + +          +  L   +N     +      
Sbjct: 69  VLY-ETLDLESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR-VSCSR-- 118

Query: 677 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDA 736
               + + LA+N ++            +  L+                        L+  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD------------------------LKLN 154

Query: 737 LVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI 796
            +     A        L   ++   N     +  +      L++ +LS+N     +    
Sbjct: 155 EIDTVNFAELAASSDTL-EHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEF 210

Query: 797 GAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT 837
            +   +  I    N+L   I +++     L H +L  N   
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 26/220 (11%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             L  L  L  LDL+ N  Q       +    ++  L+ +       +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI-SRVSC--SRGQGKKN 124

Query: 171 LDLSWNFLYVENLWWLPGLSF-----LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
           + L+ N      +  L  L       ++ LDL    +   +    +  +  +L  L L  
Sbjct: 125 IYLANN-----KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQY 178

Query: 226 CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGL 285
             ++ +       F+ L TLDL  N+   +F+         + ++ LR N     I + L
Sbjct: 179 NFIYDVKGQ--VVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL-IEKAL 233

Query: 286 QNLTSLKHLLLDSNRFNS-SIPNWLYRFNRLESLGVSNNS 324
           +   +L+H  L  N F+  ++ ++  +  R++++      
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 751 LNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLN 810
            N  +I   + ++    +     +   ++  +LS N  +      +     LE ++ S N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 811 QLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASS 853
            L  E    + SL+ L  L+L+NN +  ++     +++  A++
Sbjct: 69  VLY-ETL-DLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAAN 108

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 774 NLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN 833
           N    +   ++++     +     +  +++ +D S N LS      ++  T L  LNLS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 834 NNLTGKIPSSTQLQS 848
           N L  +      L +
Sbjct: 68  NVLY-ETLDLESLST 81

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (281), Expect = 6e-27
 Identities = 52/374 (13%), Positives = 98/374 (26%), Gaps = 84/374 (22%)

Query: 457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSL 516
            H       L    S       ++  S   + Y  D +      +  N  N    ++ + 
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVL-SQWQRHYNADRNRWHSAWRQANSNN---PQIETR 63

Query: 517 GSNSFSGALPLI----SSNLIELDFSNNSIS---GSIFHFICYRAHELKKLQFLYLRGNF 569
              +      L+        + L+  +  +       F         L  LQ + +    
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF--------RLSHLQHMTIDAAG 115

Query: 570 LQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI------- 622
           L  EL D    +  L  L L+ N     LP S+ SL  L+ L +R       +       
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 623 ---HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAF 679
                 +    L +L +        +P  I      +  L +R++   +L    +  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRS-LPASIA-NLQNLKSLKIRNSPLSAL-GPAIHHLPK 230

Query: 680 LQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV 739
           L+ +DL         P        +  L                                
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRL-------------------------------- 258

Query: 740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM 799
                                  +    +PL++  L  L+  +L       R+P  I  +
Sbjct: 259 ------------------ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 800 RSLESIDFSLNQLS 813
            +   I    +  +
Sbjct: 301 PANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 9e-27
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 22/249 (8%)

Query: 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDL 173
                   L+L        Q P     + +L+++ +     +  +P  +   + L+ L L
Sbjct: 78  ATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTL 134

Query: 174 SWNFLYVENLWWLP----GLSFLKDLDLSYVNLSKA-------SDWLRVTNTLPSLVKLR 222
           + N L       LP     L+ L++L +               +D       L +L  LR
Sbjct: 135 ARNPLRA-----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIP 282
           L    +  LP  +IAN   L +L +  +    S +   +  L +L  LDLR        P
Sbjct: 190 LEWTGIRSLPA-SIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 283 EGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
                   LK L+L       ++P  ++R  +LE L +       R+   +A L     +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 343 MLSCVKLSQ 351
           ++     +Q
Sbjct: 307 LVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (277), Expect = 2e-26
 Identities = 67/337 (19%), Positives = 118/337 (35%), Gaps = 32/337 (9%)

Query: 365 SSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN 424
           SSG E L  +GS+        L Q++  Y  D +         +   + +  Q    +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGR 66

Query: 425 ELNGMNDNW--IPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFW 482
            L    D            L LR   L  +FP       HL ++ +  +G+   +P+   
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM- 123

Query: 483 SSASQIYVLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNS 541
              + +  L L+ N +   +P  + +  +L  LS+ +      LP           ++  
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE--------PLASTD 174

Query: 542 ISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPIS 601
            SG            L  LQ L L    ++  L     N QNL  L + N+  +  L  +
Sbjct: 175 ASGEHQG--------LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPA 224

Query: 602 LGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI 660
           +  L  L+ L LR                 L  L + +   +  +P  I  R +++  L 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLD 283

Query: 661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRC 697
           LR     S LP  +  L    I+ +   +L  ++ + 
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 6e-26
 Identities = 57/327 (17%), Positives = 104/327 (31%), Gaps = 28/327 (8%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
                 L    +      +  +   +   +    +          +  N +N Q    + 
Sbjct: 11  SSGRENLYFQGST----ALRPYHDVLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTG 65

Query: 176 NFL-YVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL 234
             L    +L           L+L  V L +  D       L  L  + +    L  LP  
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAF---RLSHLQHMTIDAAGLMELPD- 121

Query: 235 AIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN---------FQGPIPEGL 285
            +  F+ L TL L  N      +P  +  L +L  L +R                     
Sbjct: 122 TMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 286 QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
           Q L +L+ L L+      S+P  +     L+SL + N+ L   +  ++  L  L  + L 
Sbjct: 180 QGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237

Query: 346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGP 405
                +    IF    G  +  L+ L+L+  S    L   + +   L  LDL     +  
Sbjct: 238 GCTALRNYPPIF----GGRAP-LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 406 IPFSLGHLSTLQFIDLSYNELNGMNDN 432
           +P  +  L     I +  +    ++ +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (262), Expect = 2e-24
 Identities = 52/333 (15%), Positives = 106/333 (31%), Gaps = 51/333 (15%)

Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHL 449
                L    ++ + P    L         D +                           
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----------------------- 48

Query: 450 GSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNA 508
                    +  +      +   +  +   +  ++      L+L    +  Q P+     
Sbjct: 49  ----AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL 103

Query: 509 AQLEVLSLGSNSFSGALPL-IS--SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYL 565
           + L+ +++ +      LP  +   + L  L  + N +  ++   I      L +L+ L +
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA----SLNRLRELSI 157

Query: 566 RGN---------FLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 616
           R               + +       NL  L L       +LP S+ +L +L+SL +R +
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

Query: 617 NLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRS-NKFHSLLPKGLC 675
            LS    ++ +   L  LD+     + N P   G   + +  LIL+  +   +L P  + 
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTL-PLDIH 274

Query: 676 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
            L  L+ +DL        +P  I  L A   + 
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (255), Expect = 1e-23
 Identities = 57/292 (19%), Positives = 99/292 (33%), Gaps = 41/292 (14%)

Query: 162 LGNLSNLQYLDLS--------------WNFLYV------ENLWWLPGLSFLKDLDLSYVN 201
             + S  + L                 W   Y        + W     +  +    +   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67

Query: 202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV 261
           L   +D L    T P  V L L    L   P       S L  + +         +P+ +
Sbjct: 68  LKATADLLEDA-TQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLME--LPDTM 123

Query: 262 FGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFN-------- 313
                L  L L RN  +  +P  + +L  L+ L + +    + +P  L   +        
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 314 -RLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILV 372
             L+SL +    ++  +  S+A+L NL+S+ +    LS     I  +        LE L 
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK------LEELD 235

Query: 373 LRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN 424
           LRG +   +     G    L  L L + S +  +P  +  L+ L+ +DL   
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 4e-23
 Identities = 57/397 (14%), Positives = 116/397 (29%), Gaps = 78/397 (19%)

Query: 282 PEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
                + +  ++L    +       + L ++ R  +   +            A+  N + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQI 60

Query: 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNS 401
              +   L      + D        G   L LR   +      +  +  +L ++ +    
Sbjct: 61  ETRTGRALKATADLLED----ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 402 IVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQK 461
           ++  +P ++   + L+ + L+ N L                           P+ + S  
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPL------------------------RALPASIASLN 150

Query: 462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF 521
            L  L +        +P              L+     G+   L N   L+ L L     
Sbjct: 151 RLRELSIRACPELTELPE------------PLASTDASGEHQGLVN---LQSLRLEWTGI 195

Query: 522 SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNY 581
             +LP              SI+             L+ L+ L +R + L   L     + 
Sbjct: 196 R-SLP-------------ASIA------------NLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 582 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENE 640
             L  LDL       N P   G    L+ L L+  +   T+   +   T L  LD+    
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDL 677
            +  +P+ I  +     ++++  +    L        
Sbjct: 289 NLSRLPSLIA-QLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 2e-22
 Identities = 47/357 (13%), Positives = 93/357 (26%), Gaps = 84/357 (23%)

Query: 503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQF 562
            +  +++  E L    ++       + S       ++ +   S +             Q 
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ-----ANSNNPQI 60

Query: 563 LYLRGNFLQ---GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
               G  L+     L D        + L+L +       P     L  LQ + +    L 
Sbjct: 61  ETRTGRALKATADLLEDATQ--PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 620 GTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAF 679
               +++    L TL +  N                              LP  +  L  
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRA--------------------------LPASIASLNR 151

Query: 680 LQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV 739
           L+ + +       E+P  + +  A                                    
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQG------------------------------ 181

Query: 740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM 799
                      L  ++ +          +P  + NL+ L+S  + N+  +  +  +I  +
Sbjct: 182 -----------LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228

Query: 800 RSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS----TQLQSFDAS 852
             LE +D          P        L  L L + +    +P      TQL+  D  
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 22/215 (10%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            ++     L  L L+ N  +   +P  I S+  LR L++     +  +P  L +      
Sbjct: 121 DTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
                            GL  L+ L L +  +      +     L +L  L++    L  
Sbjct: 179 HQ---------------GLVNLQSLRLEWTGIRSLPASIA---NLQNLKSLKIRNSPLSA 220

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           L P AI +   L  LDL       ++ P    G   L  L L+  +    +P  +  LT 
Sbjct: 221 LGP-AIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
           L+ L L      S +P+ + +      + V  +  
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 6e-19
 Identities = 57/407 (14%), Positives = 104/407 (25%), Gaps = 105/407 (25%)

Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
                 L         L P        L+     YN   N +   W         ++ R 
Sbjct: 11  SSGRENLYFQGST--ALRPY----HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 275 NNFQGPIPEGLQNLTS--LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRS 332
                   + L++ T      L L S       P+  +R + L+ + +    L       
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM------ 117

Query: 333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNL 392
                          +L   +                                  QF  L
Sbjct: 118 ---------------ELPDTM---------------------------------QQFAGL 129

Query: 393 YYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSR 452
             L L+ N +   +P S+  L+ L+ + +         +    P  LA+           
Sbjct: 130 ETLTLARNPLRA-LPASIASLNRLRELSIRAC-----PELTELPEPLASTDA-------- 175

Query: 453 FPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 512
                    +L  L L ++GI  S+P    ++   +  L +  + +    P + +  +LE
Sbjct: 176 -SGEHQGLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 513 VLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG 572
            L L   +     P                                 L+ L L+      
Sbjct: 233 ELDLRGCTALRNYP-------------PIFG------------GRAPLKRLILKDCSNLL 267

Query: 573 ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
            L         L  LDL        LP  +  L +   + +  +  +
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 34/288 (11%), Positives = 79/288 (27%), Gaps = 73/288 (25%)

Query: 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
           +      L    +         L       +    + + +    +  N      ++    
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN----PQIETRTG 65

Query: 640 EFVENIPTWIGE-RFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCI 698
             ++     + +      V L LRS       P     L+ LQ + +    L  E+P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 699 HNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIID 758
                + TL                                                   
Sbjct: 124 QQFAGLETL--------------------------------------------------T 133

Query: 759 FSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIG---------AMRSLESIDFSL 809
            ++N     +P  + +L  L+  ++        +PE +           + +L+S+    
Sbjct: 134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 810 NQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS----TQLQSFDASS 853
             +   +P S+++L  L  L + N+ L+  +  +     +L+  D   
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 17/160 (10%)

Query: 101 PRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPP 160
           P  +     +     L +L  L L +   +   +P  I ++ NL+ L +  +     + P
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGP 223

Query: 161 QLGNLSNLQYLDLSWNFLYVENLWWLP----GLSFLKDLDLSYVN-LSKASDWLRVTNTL 215
            + +L  L+ LDL         L   P    G + LK L L   + L      +   + L
Sbjct: 224 AIHHLPKLEELDLRGC----TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI---HRL 276

Query: 216 PSLVKLRLSRC-QLHHLPPLAIANFSTLTTLDLLYNQFDN 254
             L KL L  C  L  LP L IA       + +  +    
Sbjct: 277 TQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQ 315

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (274), Expect = 3e-26
 Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 13/215 (6%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQ--FVGMIPPQLGNLSNLQYLDLSW 175
             + L+L  N  Q +        +  L  L+LS     F G         ++L+YLDLS+
Sbjct: 29  SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 176 NFLYVENLWWLP----GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           N      +  +     GL  L+ LD  + NL + S++    + L +L+ L +S       
Sbjct: 88  N-----GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVA 141

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
                   S+L  L +  N F  +F+P+    L  L FLDL +   +   P    +L+SL
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
           + L +  N F S         N L+ L  S N + 
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 7e-22
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 8/196 (4%)

Query: 110 NPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQL-GNLSNL 168
           + S      L YLDLS+N      +      +  L +L+  ++    M    +  +L NL
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 169 QYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL 228
            YLD+S     V       GLS L+ L ++  +  +      +   L +L  L LS+CQL
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQL 187

Query: 229 HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQN 287
             L P A  + S+L  L++ +N F    +  + +  L  L  LD   N+      + LQ+
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 288 L-TSLKHLLLDSNRFN 302
             +SL  L L  N F 
Sbjct: 246 FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 57/265 (21%), Positives = 89/265 (33%), Gaps = 22/265 (8%)

Query: 212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFL 270
           T    S  +L L   +L  LP       + LT L L  N        +    G   L +L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 271 DLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIP-NWLYRFNRLESLGVSNNSLQGRV 329
           DL  N     +      L  L+HL    +        +       L  L +S+   +   
Sbjct: 84  DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 330 IRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGHLTYKL 386
                 L +L  + ++     +      DIF+   +  L  L L       +S      L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRN--LTFLDLSQCQLEQLSPTAFNSL 198

Query: 387 GQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF--QLATLGL 444
               +L  L++S+N+      F    L++LQ +D S N +       +  F   LA L L
Sbjct: 199 ---SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

Query: 445 RH------CHLGSRFPSWLHSQKHL 463
                   C   S F  W+  Q+ L
Sbjct: 256 TQNDFACTCEHQS-FLQWIKDQRQL 279

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 47/249 (18%), Positives = 84/249 (33%), Gaps = 14/249 (5%)

Query: 158 IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
           +P  +   S+   L+L  N L          L+ L  L LS   LS      +      S
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF 277
           L  L LS   +  +          L  LD  ++        +    L  L++LD+   + 
Sbjct: 80  LKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 278 QGPIPEGLQNLTSLKHLLLDSNRFNSSI-PNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
           +         L+SL+ L +  N F  +  P+       L  L +S   L+     +  SL
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 337 CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKNLY 393
            +L+ + +S       +      +    S  L++L        +             +L 
Sbjct: 199 SSLQVLNMSHNNFFS-LDT--FPYKCLNS--LQVLDYSLNHIMTSKKQELQHF--PSSLA 251

Query: 394 YLDLSNNSI 402
           +L+L+ N  
Sbjct: 252 FLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 9e-17
 Identities = 50/249 (20%), Positives = 90/249 (36%), Gaps = 33/249 (13%)

Query: 464 NYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 522
             +  +  G+T S+P  I     S    L+L  N++                SL    F 
Sbjct: 10  TEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQ---------------SLPHGVFD 49

Query: 523 GALPLISSNLIELDFSNNSISGSIFHFICYRA-HELKKLQFLYLRGNFLQGELTDCWMNY 581
             L      L +L  S+N +S   F   C ++      L++L L  N +   ++  ++  
Sbjct: 50  K-LT----QLTKLSLSSNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 100

Query: 582 QNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLSG-TIHSLKNCTALLTLDVGEN 639
           + L  LD  ++        S+  SL +L  L +   +            ++L  L +  N
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH 699
            F EN    I      +  L L   +   L P     L+ LQ+++++ NN          
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 700 NLRAMVTLN 708
            L ++  L+
Sbjct: 221 CLNSLQVLD 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.5 bits (194), Expect = 6e-16
 Identities = 56/244 (22%), Positives = 95/244 (38%), Gaps = 22/244 (9%)

Query: 364 VSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI--VGPIPFSLGHLSTLQFIDL 421
           + S    L L  + +         +   L  L LS+N +   G    S    ++L+++DL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 422 SYNELNGMNDNWIPPFQLATLGLRHCHLGSRFP-SWLHSQKHLNYLDLSYSGITGSIPNI 480
           S+N +  M+ N++   QL  L  +H +L      S   S ++L YLD+S++    +   I
Sbjct: 86  SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 481 FWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSGALPLIS----SNLIE 534
           F +  S + VL ++ N           T    L  L L        L   +    S+L  
Sbjct: 146 F-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQV 203

Query: 535 LDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMN-YQNLMILDLS 590
           L+ S+N   S+    +         L  LQ L    N +         +   +L  L+L+
Sbjct: 204 LNMSHNNFFSLDTFPYK-------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 591 NNKF 594
            N F
Sbjct: 257 QNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 49/262 (18%), Positives = 88/262 (33%), Gaps = 41/262 (15%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
             +   L+L +N +          L+ L  + LS N L+                     
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG---CCSQSDFGT------ 77

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN---L 505
                         L YLDLS++G+  ++ + F     Q+  LD   + +  Q+      
Sbjct: 78  ------------TSLKYLDLSFNGVI-TMSSNFLGL-EQLEHLDFQHSNLK-QMSEFSVF 122

Query: 506 TNAAQLEVLSLGSNSFSGALPLIS----SNLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
            +   L  L +                 S+L  L  + NS   +    I      L+ L 
Sbjct: 123 LSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---LRNLT 178

Query: 562 FLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS-- 619
           FL L    L+      + +  +L +L++S+N F          L SLQ L    N++   
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

Query: 620 --GTIHSLKNCTALLTLDVGEN 639
               +      ++L  L++ +N
Sbjct: 239 KKQELQHF--PSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 58/313 (18%), Positives = 103/313 (32%), Gaps = 78/313 (24%)

Query: 269 FLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGR 328
            +          +P G+   +S   L L+SN+  S       +  +L  L +S+N L  +
Sbjct: 11  EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 329 VIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQ 388
              S +                           G                          
Sbjct: 68  GCCSQS-------------------------DFG-------------------------- 76

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGL 444
             +L YLDLS N ++  +  +   L  L+ +D  ++ L  M++     F     L  L +
Sbjct: 77  TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDI 133

Query: 445 RHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN 504
            H H    F    +    L  L ++ +    +     ++    +  LDLS  Q+  Q+  
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

Query: 505 --LTNAAQLEVLSLGSNSFSGALPLIS----SNLIELDFSNN---SISGSIFHFICYRAH 555
               + + L+VL++  N+F  +L        ++L  LD+S N   +             H
Sbjct: 193 TAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL------QH 245

Query: 556 ELKKLQFLYLRGN 568
               L FL L  N
Sbjct: 246 FPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 55/321 (17%), Positives = 98/321 (30%), Gaps = 98/321 (30%)

Query: 528 ISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFL--QGELTDCWMNYQ 582
           I S+   L+  +N   S+   +F        +L +L  L L  N L  +G  +       
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFD-------KLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS---LKNCTALLTLDVGEN 639
           +L  LDLS N     +  +   L  L+ L  + +NL   +       +   L+ LD    
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD---- 132

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNN-LSGEVPRCI 698
                                +               L+ L+++ +A N+     +P   
Sbjct: 133 ---------------------ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 699 HNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIID 758
             LR +  L                                                  D
Sbjct: 172 TELRNLTFL--------------------------------------------------D 181

Query: 759 FSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP 817
            S+     ++      +L +LQ  N+S+N F          + SL+ +D+SLN +     
Sbjct: 182 LSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSK 239

Query: 818 QSM--SSLTYLNHLNLSNNNL 836
           +       + L  LNL+ N+ 
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 38/257 (14%)

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENEF-VE 643
           +  ++   T ++P  +    S   L L  N L  ++        T L  L +  N    +
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 644 NIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCI-HNLR 702
              +      + +  L L  N   ++       L  L+ +D   +NL       +  +LR
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 703 AMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKN 762
            ++ L+      I +             +        +           +L  ++  + N
Sbjct: 127 NLIYLD------ISHTHT---------RVAFNGIFNGLS----------SL-EVLKMAGN 160

Query: 763 NFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESI-GAMRSLESIDFSLNQLSGEIPQSM 820
           +F      ++ T L+ L   +LS      ++  +   ++ SL+ ++ S N          
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 821 SSLTYLNHLNLSNNNLT 837
             L  L  L+ S N++ 
Sbjct: 220 KCLNSLQVLDYSLNHIM 236

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (272), Expect = 8e-26
 Identities = 63/316 (19%), Positives = 118/316 (37%), Gaps = 27/316 (8%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF 177
           HL  +  S    +  ++P+ +    +   L+L   +   +      NL NL  L L  N 
Sbjct: 32  HLRVVQCSDLGLE--KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 178 LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIA 237
           +   +      L  L+ L LS   L +  +         +L +LR+   ++  +      
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPE-----KMPKTLQELRVHENEITKVRKSVFN 142

Query: 238 NFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLL 296
             + +  ++L  N   +S + N  F G+ +L ++ +   N    IP+GL    SL  L L
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHL 199

Query: 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI 356
           D N+        L   N L  LG+S NS+      S+A+  +LR + L+  KL  ++   
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGG 258

Query: 357 FDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKN---LYYLDLSNNSI-VGPIPFS 409
                      ++++ L     S++  +     G          + L +N +    I  S
Sbjct: 259 LADH-----KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 410 L-GHLSTLQFIDLSYN 424
               +     + L   
Sbjct: 314 TFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 6e-25
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 25/246 (10%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQY 170
           +   L  L  L LS N  + +           L+ L +   +    +       L+ +  
Sbjct: 95  AFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENEIT-KVRKSVFNGLNQMIV 149

Query: 171 LDLSWNFLYVENL--WWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL 228
           ++L  N L    +      G+  L  + ++  N++            PSL +L L   ++
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKI 204

Query: 229 HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQN 287
             +   ++   + L  L L +N    S V N        L  L L  N     +P GL +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKLVK-VPGGLAD 261

Query: 288 LTSLKHLLLDSNRFNS------SIPNWLYRFNRLESLGVSNNSLQGRVIRSMA--SLCNL 339
              ++ + L +N  ++        P +  +      + + +N +Q   I+      +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 340 RSVMLS 345
            +V L 
Sbjct: 322 AAVQLG 327

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (250), Expect = 6e-23
 Identities = 47/217 (21%), Positives = 83/217 (38%), Gaps = 13/217 (5%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
              +LK+L  L L  N    +  P     +  L  L LS  Q    +P ++     LQ L
Sbjct: 71  DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQEL 126

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
            +  N +         GL+ +  ++L    L  +         +  L  +R++   +  +
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEG-LQNLT 289
           P        +LT L L  N+   + V      GL  L  L L  N+    +  G L N  
Sbjct: 187 PQGL---PPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTP 240

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
            L+ L L++N+    +P  L     ++ + + NN++ 
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 63/382 (16%), Positives = 116/382 (30%), Gaps = 107/382 (28%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRR 274
           P    L L   ++  +      N   L TL L+ N+   S +    F  L++L  L L +
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSK 109

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N  +  +PE +    +L+ L +  N       +     N++  + +  N L+   I + A
Sbjct: 110 NQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 335 --SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNL 392
              +  L  + ++   ++             +  GL                      +L
Sbjct: 167 FQGMKKLSYIRIADTNITT------------IPQGL--------------------PPSL 194

Query: 393 YYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSR 452
             L L  N I      SL  L+ L  + LS+N ++      +    LA            
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----VDNGSLANT---------- 239

Query: 453 FPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 512
                    HL  L L+ + +   +P         I V+ L  N I              
Sbjct: 240 --------PHLRELHLNNNKLV-KVPGGLADH-KYIQVVYLHNNNIS------------- 276

Query: 513 VLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ 571
             ++GSN F         ++   +   +N +          +  E++   F  +      
Sbjct: 277 --AIGSNDFCPPGYNTKKASYSGVSLFSNPV----------QYWEIQPSTFRCVY----- 319

Query: 572 GELTDCWMNYQNLMILDLSNNK 593
                          + L N K
Sbjct: 320 -----------VRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 6e-20
 Identities = 61/311 (19%), Positives = 103/311 (33%), Gaps = 61/311 (19%)

Query: 386 LGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLR 445
               KNL+ L L NN I    P +   L  L+ + LS N+L       +P          
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-----LPEKMP------ 120

Query: 446 HCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH-GQIPN 504
                          K L  L +  + IT  +    ++  +Q+ V++L  N +    I N
Sbjct: 121 ---------------KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 505 --LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKK 559
                  +L  + +   + +     +  +L EL    N    +  +           L  
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-------KGLNN 217

Query: 560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
           L  L L  N +         N  +L  L L+NNK    +P  L     +Q ++L  NN+S
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

Query: 620 GTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNK--FHSLLPKGLCDL 677
                           +G N+F    P     + +    + L SN   +  + P     +
Sbjct: 277 ---------------AIGSNDF---CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 678 AFLQIVDLADN 688
                V L + 
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.7 bits (218), Expect = 9e-19
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 14/197 (7%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFI-CSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
               L  +  ++L  N  +   I       M  L Y+ ++ T     IP  L    +L  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTE 196

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L L  N +   +   L GL+ L  L LS+ ++S   +        P L +L L+  +L  
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANTPHLRELHLNNNKLVK 254

Query: 231 LPPLAIANFSTLTTLDLLYNQF----DNSFVPNWVF-GLIQLVFLDLRRNNFQ-GPIPEG 284
           +P   +A+   +  + L  N       N F P            + L  N  Q   I   
Sbjct: 255 VPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 285 L-QNLTSLKHLLLDSNR 300
             + +     + L + +
Sbjct: 314 TFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 22/239 (9%)

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGS 518
                LDL  + IT  I +  + +   ++ L L  N+I  +I         +LE L L  
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 519 NSFSGALPLISSNLIELDFSNNSIS---GSIFHFICYRAHELKKLQFLYLRGNFLQGEL- 574
           N        +   L EL    N I+    S+F+        L ++  + L  N L+    
Sbjct: 110 NQLKELPEKMPKTLQELRVHENEITKVRKSVFN-------GLNQMIVVELGTNPLKSSGI 162

Query: 575 -TDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALL 632
               +   + L  + +++   T    I  G   SL  LHL  N ++     SLK    L 
Sbjct: 163 ENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 633 TLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
            L +  N  +  +          +  L L +NK   + P GL D  ++Q+V L +NN+S
Sbjct: 220 KLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 67/386 (17%), Positives = 107/386 (27%), Gaps = 101/386 (26%)

Query: 462 HLNYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
           HL  +  S  G+   +P ++         +LDL  N+I                 +    
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPD----TALLDLQNNKIT---------------EIKDGD 71

Query: 521 FSGALPLISSNLIELDFSNNSISGSIFHFICYRA-HELKKLQFLYLRGNFLQGELTDCWM 579
           F         NL  L   NN IS      I   A   L KL+ LYL  N L+        
Sbjct: 72  FKNL-----KNLHTLILINNKIS-----KISPGAFAPLVKLERLYLSKNQLKELPEKM-- 119

Query: 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI---HSLKNCTALLTLDV 636
             + L  L +  N+ T         L  +  + L  N L  +     + +    L  + +
Sbjct: 120 -PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 637 GENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPR 696
            +      IP  +      +  L L  NK   +    L  L  L  + L+ N++S     
Sbjct: 179 ADTNI-TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 697 CIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRI 756
            + N   +  L                                                 
Sbjct: 235 SLANTPHLREL------------------------------------------------- 245

Query: 757 IDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG------RIPESIGAMRSLESIDFSLN 810
              + N    K+P  + + K +Q   L NN  +         P       S   +    N
Sbjct: 246 -HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 811 QLS-GEIPQSM-SSLTYLNHLNLSNN 834
            +   EI  S    +     + L N 
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 48/268 (17%), Positives = 90/268 (33%), Gaps = 44/268 (16%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENE 640
           +  +LDL NNK T        +L +L +L L  N +S  I   +      L  L + +N+
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV--PRCI 698
             E +P    +    +  L +  N+   +       L  + +V+L  N L          
Sbjct: 112 LKE-LPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 699 HNLRAMVTLNSHAGKAIQYQFLLY-ASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRII 757
             ++ +  +       I    +       P                        +L   +
Sbjct: 168 QGMKKLSYIR------IADTNITTIPQGLPP-----------------------SL-TEL 197

Query: 758 DFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEI 816
               N  + K+       L  L    LS N  +     S+     L  +  + N+L  ++
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 817 PQSMSSLTYLNHLNLSNNNLTGKIPSST 844
           P  ++   Y+  + L NNN++  I S+ 
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS-AIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 51/261 (19%), Positives = 96/261 (36%), Gaps = 36/261 (13%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLKNCTALLTLDVGENEF 641
           +L ++  S+      +P  L        L L+ N ++       KN   L TL +  N+ 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK- 87

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNL 701
           +  I         ++  L L  N+   L P+ +     LQ + + +N ++       + L
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGL 144

Query: 702 RAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSK 761
             M+ +       +    L        ++ +   A   MK           L   I  + 
Sbjct: 145 NQMIVVE------LGTNPL-------KSSGIENGAFQGMK----------KL-SYIRIAD 180

Query: 762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS 821
            N +  IP  +    +L   +L  N  T     S+  + +L  +  S N +S     S++
Sbjct: 181 TNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 822 SLTYLNHLNLSNNNLTGKIPS 842
           +  +L  L+L+NN L  K+P 
Sbjct: 238 NTPHLRELHLNNNKLV-KVPG 257

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (260), Expect = 3e-24
 Identities = 41/246 (16%), Positives = 83/246 (33%), Gaps = 26/246 (10%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
           +   L+ L  L +S N    +          +L  L +   +   +       L N+  +
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 172 DLSWNFLYVENL--WWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
           ++  N L           GL  L  L +S   L+         +   +L +L L   ++ 
Sbjct: 153 EMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK-----DLPETLNELHLDHNKIQ 206

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNL 288
            +    +  +S L  L L +NQ     + N     L  L  L L  N     +P GL +L
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDL 263

Query: 289 TSLKHLLLDSNRFNSSIPN-------WLYRFNRLESLGVSNNSLQGRVIRSMA--SLCNL 339
             L+ + L +N   + +         +  +      + + NN +    ++      + + 
Sbjct: 264 KLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 340 RSVMLS 345
            ++   
Sbjct: 323 LAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 61/318 (19%), Positives = 118/318 (37%), Gaps = 32/318 (10%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF 177
           HL  +  S    +   +P+ I    +   L+L       +       L +L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK--AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 178 L-YVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI 236
           +  +        L  L+ L +S  +L +        N   SLV+LR+   ++  +P    
Sbjct: 90  ISKIHEKA-FSPLRKLQKLYISKNHLVEIPP-----NLPSSLVELRIHDNRIRKVPKGVF 143

Query: 237 ANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLL 296
           +    +  +++  N  +NS      F  ++L +L +      G IP+ L    +L  L L
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHL 200

Query: 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI 356
           D N+  +     L R+++L  LG+ +N ++     S++ L  LR + L     + ++S +
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD----NNKLSRV 256

Query: 357 FDIFSGCVSSGLEILVLRG---SSVSGHL---TYKLGQFKNLYYLDLSNNSI----VGPI 406
                      L+++ L     + V  +         +      + L NN +    V P 
Sbjct: 257 PAGLPDL--KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 407 PFSLGHLSTLQFIDLSYN 424
            F    ++    I     
Sbjct: 315 TFR--CVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 60/381 (15%), Positives = 102/381 (26%), Gaps = 106/381 (27%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRR 274
           P    L L    +  L          L  L L+ N+   S +    F  L +L  L + +
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISK 111

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N+    IP  L   +SL  L +  NR              +  + +  N L+       A
Sbjct: 112 NHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 335 -SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLY 393
                L  + +S  KL+             +   L                     + L 
Sbjct: 169 FDGLKLNYLRISEAKLTG------------IPKDL--------------------PETLN 196

Query: 394 YLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRF 453
            L L +N I       L   S L  + L +N++       I    L+ L           
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-----MIENGSLSFL----------- 240

Query: 454 PSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEV 513
                    L  L L  + ++  +P         + V+ L  N I               
Sbjct: 241 -------PTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNIT-------------- 277

Query: 514 LSLGSNSFSG-ALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG 572
             +G N F      +  +    +   NN +             E++   F  +       
Sbjct: 278 -KVGVNDFCPVGFGVKRAYYNGISLFNNPVP----------YWEVQPATFRCVT------ 320

Query: 573 ELTDCWMNYQNLMILDLSNNK 593
                     + + +   N K
Sbjct: 321 ----------DRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 41/221 (18%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
               L++++ +++  N  +             L YL +S  +    IP  L     L  L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNEL 198

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
            L  N      +  +     L+                        L +L L   Q+  +
Sbjct: 199 HLDHN-----KIQAIELEDLLR---------------------YSKLYRLGLGHNQIRMI 232

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG------- 284
              +++   TL  L L  N+   S VP  +  L  L  + L  NN    +          
Sbjct: 233 ENGSLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGF 289

Query: 285 LQNLTSLKHLLLDSNRF-NSSIPNWLYR-FNRLESLGVSNN 323
                    + L +N      +    +R      ++   N 
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 9e-17
 Identities = 55/314 (17%), Positives = 100/314 (31%), Gaps = 50/314 (15%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
             +   LDL NN I          L  L  + L  N+++      I     + L      
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-----IHEKAFSPL------ 101

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LT 506
                       + L  L +S + +    PN+     S +  L +  N+I  ++P    +
Sbjct: 102 ------------RKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIR-KVPKGVFS 144

Query: 507 NAAQLEVLSLGSNSF-SGALP---LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQF 562
               +  + +G N   +            L  L  S   ++G             + L  
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-------IPKDLPETLNE 197

Query: 563 LYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI 622
           L+L  N +Q    +  + Y  L  L L +N+       SL  L +L+ LHL  N LS   
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP 257

Query: 623 HSLKNCTALLTLDVGENEFVENIP------TWIGERFSRMVVLILRSN--KFHSLLPKGL 674
             L +   L  + +  N     +          G + +    + L +N   +  + P   
Sbjct: 258 AGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 675 CDLAFLQIVDLADN 688
             +     +   + 
Sbjct: 317 RCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 70/393 (17%), Positives = 113/393 (28%), Gaps = 116/393 (29%)

Query: 462 HLNYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
           HL  +  S  G+  ++P  I         +LDL  N I                 L  + 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPD----TTLLDLQNNDIS---------------ELRKDD 73

Query: 521 FSGALPLISSNLIELDFSNNSISGSIFHFICYRA-HELKKLQFLYLRGNFL---QGELTD 576
           F G       +L  L   NN IS      I  +A   L+KLQ LY+  N L      L  
Sbjct: 74  FKGL-----QHLYALVLVNNKIS-----KIHEKAFSPLRKLQKLYISKNHLVEIPPNL-- 121

Query: 577 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS------GTIHSLKNCTA 630
                 +L+ L + +N+           L ++  + +  N L       G    LK    
Sbjct: 122 ----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK---- 173

Query: 631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690
           L  L + E +    IP    +    +  L L  NK  ++  + L   + L  + L  N +
Sbjct: 174 LNYLRISEAKLTG-IPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 691 SGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCI 750
                  +  L  +  L                                           
Sbjct: 230 RMIENGSLSFLPTLREL------------------------------------------- 246

Query: 751 LNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI-------GAMRSLE 803
                      N  S ++P  + +LK LQ   L  N  T ++  +               
Sbjct: 247 -------HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 804 SIDFSLNQLS-GEIPQSM-SSLTYLNHLNLSNN 834
            I    N +   E+  +    +T    +   N 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 32/175 (18%), Positives = 52/175 (29%), Gaps = 16/175 (9%)

Query: 109 VNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSN 167
             P   D   L+YL +S     G+           L  L+L + +    I  + L   S 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQ-AIELEDLLRYSK 218

Query: 168 LQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ 227
           L  L L  N + +     L  L  L++L L    LS+    L     L  L  + L    
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP---DLKLLQVVYLHTNN 275

Query: 228 LHHLPPLAIA------NFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRN 275
           +  +              +    + L  N      V    F  +   + +     
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 50/266 (18%), Positives = 85/266 (31%), Gaps = 41/266 (15%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENE 640
           +  +LDL NN  +         L  L +L L  N +S  IH         L  L + +N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHN 700
            VE IP       S +V L +  N+   +       L  +  +++              N
Sbjct: 114 LVE-IPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG------------GN 157

Query: 701 LRAMVTLNSHAGKAIQYQFL-LYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759
                     A   ++  +L +  ++       L + L                   +  
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL-----------------NELHL 200

Query: 760 SKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQ 818
             N     I LE       L    L +N        S+  + +L  +    N+LS  +P 
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 819 SMSSLTYLNHLNLSNNNLTGKIPSST 844
            +  L  L  + L  NN+T K+  + 
Sbjct: 259 GLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 12/144 (8%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLS 174
            + L+ L L +N  Q +++   +     L  L L + Q + MI    L  L  L+ L L 
Sbjct: 192 PETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLD 249

Query: 175 WNFL-YVENLWWLPGLSFLKDLDLSYVNLSK----ASDWLRVTNTLPSLVKLRLS--RCQ 227
            N L  V     LP L  L+ + L   N++K        +           + L      
Sbjct: 250 NNKLSRVPA--GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 228 LHHLPPLAIANFSTLTTLDLLYNQ 251
              + P      +    +     +
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 773 TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM-------SSLTY 825
           + L  L+  +L NN  + R+P  +  ++ L+ +    N ++ ++  +            Y
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 826 LNHLNLSNNNLT 837
            N ++L NN + 
Sbjct: 296 YNGISLFNNPVP 307

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (265), Expect = 3e-24
 Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 11/231 (4%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLSWN 176
           +   L+L  N  Q +++  F   + +L  L LS    +  I       L+NL  L+L  N
Sbjct: 65  NTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122

Query: 177 FLYVENLWWLPGLSFLKDLDLSYVNLSK-ASDWLRVTNTLPSLVKLRLSRC-QLHHLPPL 234
            L          LS LK+L L    +    S        +PSL +L L    +L ++   
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSYISEG 179

Query: 235 AIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL 294
           A    S L  L+L         +PN    LI+L  LDL  N+     P   Q L  L+ L
Sbjct: 180 AFEGLSNLRYLNLAMCNL--REIPNLT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236

Query: 295 LLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
            +  ++      N       L  + +++N+L          L +L  + L 
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.0 bits (239), Expect = 6e-21
 Identities = 58/218 (26%), Positives = 86/218 (39%), Gaps = 11/218 (5%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQY 170
           S   L+HL  L LS N  + ++I  F   + NL  L L   + +  IP      LS L+ 
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDNR-LTTIPNGAFVYLSKLKE 140

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVN-LSKASDWLRVTNTLPSLVKLRLSRCQLH 229
           L L  N +     +    +  L+ LDL  +  LS  S+       L +L  L L+ C L 
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLR 198

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNL 288
            +P L       L  LDL  N    S +    F GL+ L  L + ++  Q        NL
Sbjct: 199 EIPNLT--PLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
            SL  + L  N       +     + LE + + +N   
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 57/261 (21%), Positives = 98/261 (37%), Gaps = 37/261 (14%)

Query: 166 SNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
           +N + L+L  N + +  +     L  L+ L LS  ++          N L +L  L L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--GAFNGLANLNTLELFD 121

Query: 226 CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEG 284
            +L  +P  A    S L  L L  N      +P++ F  +  L  LDL        I EG
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 285 -LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVM 343
             + L++L++L L        IPN L    +L+ L +S N L      S   L +L+ + 
Sbjct: 180 AFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 344 LSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV 403
           +   ++   I    + F                             ++L  ++L++N++ 
Sbjct: 238 MIQSQIQ-VIER--NAFDN--------------------------LQSLVEINLAHNNLT 268

Query: 404 GPIPFSLGHLSTLQFIDLSYN 424
                    L  L+ I L +N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 55/262 (20%), Positives = 97/262 (37%), Gaps = 35/262 (13%)

Query: 462 HLNYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGS 518
             + +      +   +P  I     +   +L+L  NQI   I      +   LE+L L  
Sbjct: 44  QFSKVICVRKNLR-EVPDGIS----TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSR 97

Query: 519 N--------SFSGALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRG 567
           N        +F+G      +NL  L+  +N   +I    F         L KL+ L+LR 
Sbjct: 98  NHIRTIEIGAFNGL-----ANLNTLELFDNRLTTIPNGAFV-------YLSKLKELWLRN 145

Query: 568 NFLQGELTDCWMNYQNLMILDLSNNKFTGNLPI-SLGSLISLQSLHLRKNNLSGTIHSLK 626
           N ++   +  +    +L  LDL   K    +   +   L +L+ L+L   NL   I +L 
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLT 204

Query: 627 NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA 686
               L  LD+  N     I     +    +  L +  ++   +      +L  L  ++LA
Sbjct: 205 PLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 687 DNNLSGEVPRCIHNLRAMVTLN 708
            NNL+         L  +  ++
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 9e-17
 Identities = 56/239 (23%), Positives = 90/239 (37%), Gaps = 19/239 (7%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP-FQLATLGLRHC 447
             N   L+L  N I      S  HL  L+ + LS N +  +          L TL L   
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 448 HLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLS-FNQIHGQIPN-- 504
            L +           L  L L  + I  SIP+  ++    +  LDL    ++   I    
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGA 180

Query: 505 LTNAAQLEVLSLGSNSFSGALPLIS--SNLIELDFSNNSIS---GSIFHFICYRAHELKK 559
               + L  L+L   +    +P ++    L ELD S N +S      F         L  
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSF-------QGLMH 232

Query: 560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
           LQ L++  + +Q    + + N Q+L+ ++L++N  T         L  L+ +HL  N  
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 60/287 (20%), Positives = 102/287 (35%), Gaps = 61/287 (21%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRR 274
            +   L L   Q+  +   +  +   L  L L  N      +    F GL  L  L+L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFD 121

Query: 275 NNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSM 333
           N     IP G    L+ LK L L +N    SIP++   FNR+                  
Sbjct: 122 NRLTT-IPNGAFVYLSKLKELWLRNNPI-ESIPSYA--FNRIP----------------- 160

Query: 334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLY 393
               +LR + L  +K    ISE    F G  +                          L 
Sbjct: 161 ----SLRRLDLGELKRLSYISE--GAFEGLSN--------------------------LR 188

Query: 394 YLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHCHLGSR 452
           YL+L+  ++   IP +L  L  L  +DLS N L+ +          L  L +    +   
Sbjct: 189 YLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 453 FPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH 499
             +   + + L  ++L+++ +T  +P+  ++    +  + L  N  +
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 53/260 (20%), Positives = 90/260 (34%), Gaps = 36/260 (13%)

Query: 436 PFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSF 495
                 L L    +     +     +HL  L LS + I  +I    ++  + +  L+L  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 496 NQIHGQIPN--LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYR 553
           N++   IPN      ++L+ L L +N                     SI    F+     
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE------------------SIPSYAFNR---- 158

Query: 554 AHELKKLQFLYL-RGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 612
              +  L+ L L     L       +    NL  L+L+       +P +L  LI L  L 
Sbjct: 159 ---IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213

Query: 613 LRKNNLSGTI--HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLL 670
           L  N+LS  I   S +    L  L + +++ ++ I     +    +V + L  N    L 
Sbjct: 214 LSGNHLS-AIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 671 PKGLCDLAFLQIVDLADNNL 690
                 L  L+ + L  N  
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 51/258 (19%), Positives = 88/258 (34%), Gaps = 57/258 (22%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENE 640
           N  +L+L  N+       S   L  L+ L L +N++  TI   +      L TL++ +N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPR-CIH 699
            +  IP       S++  L LR+N   S+       +  L+ +DL +      +      
Sbjct: 124 -LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 700 NLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759
            L  +  LN                                                   
Sbjct: 183 GLSNLRYLN--------------------------------------------------L 192

Query: 760 SKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS 819
           +  N   +IP  +T L  L   +LS N  +   P S   +  L+ +    +Q+      +
Sbjct: 193 AMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 820 MSSLTYLNHLNLSNNNLT 837
             +L  L  +NL++NNLT
Sbjct: 251 FDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 9e-12
 Identities = 58/315 (18%), Positives = 98/315 (31%), Gaps = 91/315 (28%)

Query: 528 ISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584
           IS+N   L+   N    I  + F         L+ L+ L L  N ++      +    NL
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFK-------HLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENEFV 642
             L+L +N+ T     +   L  L+ L LR N +  +I S       +L  LD+GE    
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL--- 170

Query: 643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR 702
                                 +   +       L+ L+ ++LA  NL       I NL 
Sbjct: 171 ---------------------KRLSYISEGAFEGLSNLRYLNLAMCNLRE-----IPNLT 204

Query: 703 AMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKN 762
            ++ L                                                 +D S N
Sbjct: 205 PLIKL-----------------------------------------------DELDLSGN 217

Query: 763 NFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS 821
           + S  I       L  LQ   +  +        +   ++SL  I+ + N L+       +
Sbjct: 218 HLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 822 SLTYLNHLNLSNNNL 836
            L +L  ++L +N  
Sbjct: 277 PLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 34/195 (17%)

Query: 645 IPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAM 704
           +P  I    +   +L L  N+   +       L  L+I+ L+ N++        + L  +
Sbjct: 58  VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 705 VTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNF 764
            TL       +    L           +   A V +            L + +    N  
Sbjct: 115 NTLE------LFDNRL---------TTIPNGAFVYLS----------KL-KELWLRNNPI 148

Query: 765 SGKIPLEV-TNLKALQSFNLSNNFFTGRIPESI-GAMRSLESIDFSLNQLSGEIPQSMSS 822
              IP      + +L+  +L        I E     + +L  ++ ++  L  EIP +++ 
Sbjct: 149 E-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP 205

Query: 823 LTYLNHLNLSNNNLT 837
           L  L+ L+LS N+L+
Sbjct: 206 LIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQ 169
           P+L  L  L  LDLS N    ++   F   + +L+ L +  +Q   +I      NL +L 
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258

Query: 170 YLDLSWNFLYVENLWWLP-----GLSFLKDLDLS 198
            ++L+ N     NL  LP      L  L+ + L 
Sbjct: 259 EINLAHN-----NLTLLPHDLFTPLHHLERIHLH 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (261), Expect = 1e-23
 Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 11/231 (4%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLSWN 176
           +  YL+L  N+ Q +Q   F   + +L  L L     +  I       L++L  L+L  N
Sbjct: 76  NTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133

Query: 177 FLYVENLWWLPGLSFLKDLDLSYVNLSK-ASDWLRVTNTLPSLVKLRLSRC-QLHHLPPL 234
           +L V        LS L++L L    +    S        +PSL++L L    +L ++   
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEYISEG 190

Query: 235 AIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL 294
           A      L  L+L         +PN    L+ L  L++  N+F    P     L+SLK L
Sbjct: 191 AFEGLFNLKYLNLGMCNI--KDMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247

Query: 295 LLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
            + +++ +    N       L  L +++N+L          L  L  + L 
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 48/215 (22%), Positives = 73/215 (33%), Gaps = 13/215 (6%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLS 174
           L HL  L L  N  + ++       + +L  L L     + +IP      LS L+ L L 
Sbjct: 98  LHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLR 155

Query: 175 WNFLYVENLWWLPGLSFLKDLDLSYVN-LSK-ASDWLRVTNTLPSLVKLRLSRCQLHHLP 232
            N +     +    +  L  LDL  +  L   +         L +L  L L  C +  +P
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCNIKDMP 212

Query: 233 PLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
            L       L  L++  N F    +    F GL  L  L +  +            L SL
Sbjct: 213 NLT--PLVGLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
             L L  N  +S   +       L  L + +N   
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 61/261 (23%), Positives = 95/261 (36%), Gaps = 37/261 (14%)

Query: 166 SNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
           SN +YL+L  N + +        L  L+ L L   ++ +        N L SL  L L  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV--GAFNGLASLNTLELFD 132

Query: 226 CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEG 284
             L  +P  A    S L  L L  N      +P++ F  +  L+ LDL        I EG
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 285 -LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVM 343
             + L +LK+L L        +PN L     LE L +S N        S   L +L+ + 
Sbjct: 191 AFEGLFNLKYLNLGMCNI-KDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 344 LSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV 403
           +   ++S  I    + F G                            +L  L+L++N++ 
Sbjct: 249 VMNSQVS-LIER--NAFDG--------------------------LASLVELNLAHNNLS 279

Query: 404 GPIPFSLGHLSTLQFIDLSYN 424
                    L  L  + L +N
Sbjct: 280 SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.4 bits (222), Expect = 7e-19
 Identities = 50/211 (23%), Positives = 75/211 (35%), Gaps = 16/211 (7%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLS 174
            L  L+ L+L  N    +        +  LR L L       +       + +L  LDL 
Sbjct: 121 GLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 175 -WNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
               L   +     GL  LK L+L   N+    +       L  L +L +S      + P
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP----LVGLEELEMSGNHFPEIRP 235

Query: 234 LAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEG-LQNLTSL 291
            +    S+L  L ++ +Q   S +    F GL  LV L+L  NN    +P      L  L
Sbjct: 236 GSFHGLSSLKKLWVMNSQV--SLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYL 292

Query: 292 KHLLLDSNRFN-----SSIPNWLYRFNRLES 317
             L L  N +N       +  WL  +    S
Sbjct: 293 VELHLHHNPWNCDCDILWLAWWLREYIPTNS 323

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 62/262 (23%), Positives = 103/262 (39%), Gaps = 35/262 (13%)

Query: 462 HLNYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGS 518
             + +  +  G++  +P  I     S    L+L  N I   I      +   LEVL LG 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP----SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 519 N--------SFSGALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRG 567
           N        +F+G      ++L  L+  +N    I    F         L KL+ L+LR 
Sbjct: 109 NSIRQIEVGAFNGL-----ASLNTLELFDNWLTVIPSGAFE-------YLSKLRELWLRN 156

Query: 568 NFLQGELTDCWMNYQNLMILDLSNNKFTGNLPI-SLGSLISLQSLHLRKNNLSGTIHSLK 626
           N ++   +  +    +LM LDL   K    +   +   L +L+ L+L   N+   + +L 
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLT 215

Query: 627 NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA 686
               L  L++  N F   I        S +  L + +++   +       LA L  ++LA
Sbjct: 216 PLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 687 DNNLSGEVPRCIHNLRAMVTLN 708
            NNLS         LR +V L+
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 2e-17
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 11/170 (6%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQY 170
           +   L  L  L L  N  + +    F   + +L  L+L   + +  I       L NL+Y
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK-ASDWLRVTNTLPSLVKLRLSRCQLH 229
           L+L    +  +++  L  L  L++L++S  +  +           L SL KL +   Q+ 
Sbjct: 201 LNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFH---GLSSLKKLWVMNSQVS 255

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQ 278
            +   A    ++L  L+L +N    S +P+ +F  L  LV L L  N + 
Sbjct: 256 LIERNAFDGLASLVELNLAHNNL--SSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 58/264 (21%), Positives = 94/264 (35%), Gaps = 29/264 (10%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRR 274
               K+  +R  L  +P       S    L+L+ N      +    F  L  L  L L R
Sbjct: 54  NQFSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQM--IQADTFRHLHHLEVLQLGR 108

Query: 275 NNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSM 333
           N+ +  I  G    L SL  L L  N             ++L  L + NN ++     + 
Sbjct: 109 NSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTY--KLGQFKN 391
             + +L  + L  +K  + ISE    F G  +  L+ L L       ++     L     
Sbjct: 168 NRVPSLMRLDLGELKKLEYISE--GAFEGLFN--LKYLNLGMC----NIKDMPNLTPLVG 219

Query: 392 LYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF------QLATLGLR 445
           L  L++S N      P S   LS+L+ + +  +++     + I          L  L L 
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-----SLIERNAFDGLASLVELNLA 274

Query: 446 HCHLGSRFPSWLHSQKHLNYLDLS 469
           H +L S         ++L  L L 
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 57/244 (23%), Positives = 84/244 (34%), Gaps = 32/244 (13%)

Query: 462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSN 519
           +  YL+L  + I     + F      + VL L  N I  QI        A L  L L  N
Sbjct: 76  NTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 520 --------SFSGALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYL-RG 567
                   +F        S L EL   NN   SI    F+        +  L  L L   
Sbjct: 134 WLTVIPSGAFEYL-----SKLRELWLRNNPIESIPSYAFNR-------VPSLMRLDLGEL 181

Query: 568 NFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-TIHSLK 626
             L+      +    NL  L+L       ++P +L  L+ L+ L +  N+       S  
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 627 NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA 686
             ++L  L V  ++ V  I     +  + +V L L  N   SL       L +L  + L 
Sbjct: 240 GLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

Query: 687 DNNL 690
            N  
Sbjct: 299 HNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 57/258 (22%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENE 640
           N   L+L  N        +   L  L+ L L +N++   I   +     +L TL++ +N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCI-H 699
            +  IP+   E  S++  L LR+N   S+       +  L  +DL +      +      
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 700 NLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759
            L  +  L                                                  + 
Sbjct: 194 GLFNLKYL--------------------------------------------------NL 203

Query: 760 SKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS 819
              N    +P  +T L  L+   +S N F    P S   + SL+ +    +Q+S     +
Sbjct: 204 GMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 820 MSSLTYLNHLNLSNNNLT 837
              L  L  LNL++NNL+
Sbjct: 262 FDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 60/334 (17%), Positives = 101/334 (30%), Gaps = 93/334 (27%)

Query: 510 QLEVLSLGSNSFSGALPL-ISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYL 565
           Q   +       S  +P  I SN   L+   N    I    F         L  L+ L L
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFR-------HLHHLEVLQL 106

Query: 566 RGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS- 624
             N ++      +    +L  L+L +N  T     +   L  L+ L LR N +  +I S 
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165

Query: 625 -LKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIV 683
                 +L+ LD+GE                          K   +       L  L+ +
Sbjct: 166 AFNRVPSLMRLDLGEL------------------------KKLEYISEGAFEGLFNLKYL 201

Query: 684 DLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGR 743
           +L   N+       + NL  +V L                                    
Sbjct: 202 NLGMCNIKD-----MPNLTPLVGL------------------------------------ 220

Query: 744 AAEYKCILNLVRIIDFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSL 802
                        ++ S N+F  +I       L +L+   + N+  +     +   + SL
Sbjct: 221 -----------EELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 803 ESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNL 836
             ++ + N LS       + L YL  L+L +N  
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQ 169
           P+L  L  L  L++S N F  ++ P     + +L+ L +  +Q V +I       L++L 
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLV 269

Query: 170 YLDLSWNFLYVENLWWLP-----GLSFLKDLDLS 198
            L+L+ N     NL  LP      L +L +L L 
Sbjct: 270 ELNLAHN-----NLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 32/202 (15%), Positives = 67/202 (33%), Gaps = 35/202 (17%)

Query: 645 IPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAM 704
           +P  I    S    L L  N    +       L  L+++ L  N++        + L ++
Sbjct: 69  VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 705 VTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNF 764
            TL       +   +L          ++   A   +            L R +    N  
Sbjct: 126 NTLE------LFDNWL---------TVIPSGAFEYLS----------KL-RELWLRNNPI 159

Query: 765 SGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGA-MRSLESIDFSLNQLSGEIPQSMSS 822
              IP      + +L   +L        I E     + +L+ ++  +  +  ++P +++ 
Sbjct: 160 E-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTP 216

Query: 823 LTYLNHLNLSNNNLTGKIPSST 844
           L  L  L +S N+   +I   +
Sbjct: 217 LVGLEELEMSGNHFP-EIRPGS 237

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (263), Expect = 2e-23
 Identities = 62/319 (19%), Positives = 110/319 (34%), Gaps = 44/319 (13%)

Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHL 449
                L++  + +   +P  L   + +  + +  N L  +      P +L TL +    L
Sbjct: 40  NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL 93

Query: 450 GSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAA 509
            +  P        L+      + +      +          L +  NQ+   +P L    
Sbjct: 94  -TSLPVLPPGLLELSIFSNPLTHLPALPSGL--------CKLWIFGNQLT-SLPVL--PP 141

Query: 510 QLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNF 569
            L+ LS+  N  + +LP + S L +L   NN ++ S+             LQ L +  N 
Sbjct: 142 GLQELSVSDNQLA-SLPALPSELCKLWAYNNQLT-SLPM-------LPSGLQELSVSDNQ 192

Query: 570 LQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCT 629
           L   L         L  L   NN+ T +LP     L   + L +  N L+          
Sbjct: 193 LA-SLPT---LPSELYKLWAYNNRLT-SLPALPSGL---KELIVSGNRLTSLPVLPSE-- 242

Query: 630 ALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNN 689
            L  L V  N     +P         ++ L +  N+   L P+ L  L+    V+L  N 
Sbjct: 243 -LKELMVSGNRLTS-LPMLPS----GLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNP 295

Query: 690 LSGEVPRCIHNLRAMVTLN 708
           LS    + +  + +    +
Sbjct: 296 LSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (262), Expect = 2e-23
 Identities = 63/311 (20%), Positives = 93/311 (29%), Gaps = 74/311 (23%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
             H++ L +  N      +         LR L +S  Q    +P     L  L       
Sbjct: 60  PAHITTLVIPDN-----NLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
             L           S L  L +    L+       +    P L +L +S  QL  LP L 
Sbjct: 114 THLPAL-------PSGLCKLWIFGNQLT------SLPVLPPGLQELSVSDNQLASLPAL- 159

Query: 236 IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295
               S L  L    NQ   + +P        L  L +  N     +P     L  L    
Sbjct: 160 ---PSELCKLWAYNNQL--TSLPM---LPSGLQELSVSDNQLAS-LPTLPSELYKLW--- 207

Query: 296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISE 355
             +NR   S+P      + L+ L VS N L             L+ +M+S  +L+     
Sbjct: 208 AYNNRLT-SLPALP---SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPML 259

Query: 356 IFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLST 415
                                               L  L +  N +   +P SL HLS+
Sbjct: 260 P---------------------------------SGLLSLSVYRNQLTR-LPESLIHLSS 285

Query: 416 LQFIDLSYNEL 426
              ++L  N L
Sbjct: 286 ETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 8e-21
 Identities = 60/371 (16%), Positives = 122/371 (32%), Gaps = 70/371 (18%)

Query: 477 IPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELD 536
           +  +     +   VL++  + +   +P+    A +  L +  N+ + +LP +   L  L+
Sbjct: 31  VQKMRACLNNGNAVLNVGESGLT-TLPD-CLPAHITTLVIPDNNLT-SLPALPPELRTLE 87

Query: 537 FSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTG 596
            S N ++ S+          L +L         L    +        L  L +  N+ T 
Sbjct: 88  VSGNQLT-SLPVLPP----GLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT- 134

Query: 597 NLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRM 656
           +LP+    L  L     +  +L      L        L    N+   ++P         +
Sbjct: 135 SLPVLPPGLQELSVSDNQLASLPALPSELCK------LWAYNNQL-TSLPMLPS----GL 183

Query: 657 VVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQ 716
             L +  N+  S LP    +L  L      +N L+  +P     L+ ++   +       
Sbjct: 184 QELSVSDNQLAS-LPTLPSELYKL---WAYNNRLT-SLPALPSGLKELIVSGNR------ 232

Query: 717 YQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLK 776
                  +  P     L+                L +         N    +P+  + L 
Sbjct: 233 ------LTSLPVLPSELK---------------ELMV-------SGNRLTSLPMLPSGLL 264

Query: 777 ALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNL 836
           +L   ++  N  T R+PES+  + S  +++   N LS    Q++  +T     +      
Sbjct: 265 SL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320

Query: 837 TGKIPSSTQLQ 847
                S+ +  
Sbjct: 321 DMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 9e-21
 Identities = 62/405 (15%), Positives = 111/405 (27%), Gaps = 107/405 (26%)

Query: 217 SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN 276
               L +    L  LP       + +TTL +  N   +  +P       +L  L++  N 
Sbjct: 41  GNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQ 92

Query: 277 FQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL 336
               +P     L  L           +           L  L +  N L           
Sbjct: 93  LTS-LPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT---------- 134

Query: 337 CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLD 396
                       L                 GL+ L +  +     L         L  L 
Sbjct: 135 -----------SLPVLP------------PGLQELSVSDN----QLASLPALPSELCKLW 167

Query: 397 LSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSW 456
             NN +   +P     L  L    +S N+L                        +  P+ 
Sbjct: 168 AYNNQLTS-LPMLPSGLQEL---SVSDNQL------------------------ASLPTL 199

Query: 457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSL 516
                 L   +   + +              +  L +S N++   +P L +  +L+ L +
Sbjct: 200 PSELYKLWAYNNRLTSLPALPSG--------LKELIVSGNRL-TSLPVLPS--ELKELMV 248

Query: 517 GSNSFSGALPLISSNLIELDFSNNSISG---SIFHFICYRAHELKKLQFLYLRGNFLQGE 573
             N  + +LP++ S L+ L    N ++    S+ H        L     + L GN L  E
Sbjct: 249 SGNRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIH--------LSSETTVNLEGNPLS-E 298

Query: 574 LTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
            T      + +      +            +    ++LHL   + 
Sbjct: 299 RT--LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.0 bits (236), Expect = 3e-20
 Identities = 58/266 (21%), Positives = 93/266 (34%), Gaps = 47/266 (17%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNW------------IPP 436
              L  L++S N +   +P     L  L         L  +                +P 
Sbjct: 80  PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 138

Query: 437 F--QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLS 494
               L  L +    L S  P+       L  L    + +T S+P +     S +  L +S
Sbjct: 139 LPPGLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLT-SLPMLP----SGLQELSVS 189

Query: 495 FNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRA 554
            NQ+   +P L   ++L  L   +N  + +LP + S L EL  S N ++ S+        
Sbjct: 190 DNQLA-SLPTL--PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLT-SLPV------ 238

Query: 555 HELKKLQFLYLRGNFLQ---GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSL 611
               +L+ L + GN L       +        L+ L +  N+ T  LP SL  L S  ++
Sbjct: 239 -LPSELKELMVSGNRLTSLPMLPS-------GLLSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 612 HLRKNNLSGTIHSLKNCTALLTLDVG 637
           +L  N LS                 G
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 56/248 (22%), Positives = 79/248 (31%), Gaps = 42/248 (16%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
                L  LS             +P        L  L +   Q    +P        LQ 
Sbjct: 98  VLPPGLLELSIFSNPLT-----HLPALP---SGLCKLWIFGNQL-TSLPVLPP---GLQE 145

Query: 171 LDLSWNFLYVENLWWLP-GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
           L +S N      L  LP   S L  L      L+       +      L +L +S  QL 
Sbjct: 146 LSVSDN-----QLASLPALPSELCKLWAYNNQLT------SLPMLPSGLQELSVSDNQLA 194

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
            LP L     S L  L    N+   + +P        L  L +  N     +P     L 
Sbjct: 195 SLPTL----PSELYKLWAYNNRL--TSLPAL---PSGLKELIVSGNRLTS-LPVLPSELK 244

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKL 349
            L    +  NR  +S+P      + L SL V  N L  R+  S+  L +  +V L    L
Sbjct: 245 ELM---VSGNRL-TSLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 350 SQEISEIF 357
           S+   +  
Sbjct: 297 SERTLQAL 304

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.1 bits (213), Expect = 2e-17
 Identities = 63/441 (14%), Positives = 130/441 (29%), Gaps = 123/441 (27%)

Query: 413 LSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSG 472
            +    +++  + L  + D  +P   + TL +   +L +  P+       L  L++S + 
Sbjct: 39  NNGNAVLNVGESGLTTLPDC-LPA-HITTLVIPDNNL-TSLPALP---PELRTLEVSGNQ 92

Query: 473 ITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNL 532
           +T S+P +      ++ +       +      L        L +  N  + +LP++   L
Sbjct: 93  LT-SLPVLP-PGLLELSIFSNPLTHLPALPSGLCK------LWIFGNQLT-SLPVLPPGL 143

Query: 533 IELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNN 592
            EL  S+N ++               +L  L+   N L   L         L  L +S+N
Sbjct: 144 QELSVSDNQLAS--------LPALPSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 593 KFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGER 652
           +   +LP     L  L + + R  +L      LK       L V  N    ++P    E 
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLK------ELIVSGNRL-TSLPVLPSE- 242

Query: 653 FSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAG 712
                                      L+ + ++ N L+  +P     L           
Sbjct: 243 ---------------------------LKELMVSGNRLT-SLPMLPSGL----------- 263

Query: 713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEV 772
                                                       +   +N  + ++P  +
Sbjct: 264 ------------------------------------------LSLSVYRNQLT-RLPESL 280

Query: 773 TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS--GEIPQSMSSLTYLNHLN 830
            +L +  + NL  N  + R  ++   +R + S       +        S    T   HL 
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQA---LREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

Query: 831 LSNNNLTGKIPSSTQLQSFDA 851
            ++  +  +         +  
Sbjct: 338 AADWLVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.1 bits (213), Expect = 2e-17
 Identities = 64/380 (16%), Positives = 103/380 (27%), Gaps = 103/380 (27%)

Query: 165 LSNLQYLDLSWNFLYVENLWWLPG--LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR 222
            +    L++  + L       LP    + +  L +   NL+       +    P L  L 
Sbjct: 39  NNGNAVLNVGESGLTT-----LPDCLPAHITTLVIPDNNLTS------LPALPPELRTLE 87

Query: 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIP 282
           +S  QL  LP L       L+                       L  L +  N     +P
Sbjct: 88  VSGNQLTSLPVL-PPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTS-LP 137

Query: 283 EGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
                L  L    +  N+  +S+P      + L  L   NN L                 
Sbjct: 138 VLPPGLQELS---VSDNQL-ASLPALP---SELCKLWAYNNQLT---------------- 174

Query: 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI 402
                 L                SGL+ L                         +S+N +
Sbjct: 175 -----SLPMLP------------SGLQEL------------------------SVSDNQL 193

Query: 403 VGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKH 462
              +P     L  L       N L  +      P  L  L +    L S  P        
Sbjct: 194 AS-LPTLPSELYKL---WAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVLP---SE 242

Query: 463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 522
           L  L +S + +T S+P       S +  L +  NQ+     +L + +    ++L  N  S
Sbjct: 243 LKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297

Query: 523 GALPLISSNLIELDFSNNSI 542
                    +      +  I
Sbjct: 298 ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 4e-17
 Identities = 55/325 (16%), Positives = 98/325 (30%), Gaps = 95/325 (29%)

Query: 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589
           +    L+   + ++ ++   +         +  L +  N L   L         L  L++
Sbjct: 40  NGNAVLNVGESGLT-TLPDCL------PAHITTLVIPDNNLT-SLPA---LPPELRTLEV 88

Query: 590 SNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWI 649
           S N+ T +LP+    L+ L        +L      L        L +  N+   ++P   
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC------KLWIFGNQL-TSLPVLP 140

Query: 650 GERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNS 709
                 +  L +  N+  S LP    +L  L      +N L+  +P     L+       
Sbjct: 141 PG----LQELSVSDNQLAS-LPALPSELCKL---WAYNNQLT-SLPMLPSGLQ------- 184

Query: 710 HAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP 769
                                                    L++      S N  +  +P
Sbjct: 185 ----------------------------------------ELSV------SDNQLA-SLP 197

Query: 770 LEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHL 829
              + L  L      NN  T  +P        L+ +  S N+L+  +P   S L     L
Sbjct: 198 TLPSELYKL---WAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLPVLPSELK---EL 246

Query: 830 NLSNNNLTGKIPSS-TQLQSFDASS 853
            +S N LT  +P   + L S     
Sbjct: 247 MVSGNRLT-SLPMLPSGLLSLSVYR 270

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.0 bits (192), Expect = 7e-15
 Identities = 42/226 (18%), Positives = 70/226 (30%), Gaps = 27/226 (11%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
              L  L    N      +P        L+ L++S  Q    +P     L  L   +   
Sbjct: 160 PSELCKLWAYNNQLT--SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRL 213

Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
             L           S LK+L +S   L+       +      L +L +S  +L  LP L 
Sbjct: 214 TSL-------PALPSGLKELIVSGNRLT------SLPVLPSELKELMVSGNRLTSLPML- 259

Query: 236 IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295
               S L +L +  NQ   + +P  +  L     ++L  N       + L+ +TS     
Sbjct: 260 ---PSGLLSLSVYRNQL--TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

Query: 296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
               RF+ +  +       L     + + L        A       
Sbjct: 315 GPIIRFDMAGASAPRETRALHLA--AADWLVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 49/281 (17%), Positives = 93/281 (33%), Gaps = 63/281 (22%)

Query: 573 ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALL 632
           ++  C  N     +L++  +  T  LP  L +   + +L +  NNL+             
Sbjct: 33  KMRACLNN--GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTSLPALPPELR--- 84

Query: 633 TLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG 692
           TL+V  N+   ++P         + +           LP GLC L       +  N L+ 
Sbjct: 85  TLEVSGNQL-TSLPVLPP-GLLELSIFSNPLTHL-PALPSGLCKL------WIFGNQLT- 134

Query: 693 EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILN 752
            +P     L+                  L  S     ++                     
Sbjct: 135 SLPVLPPGLQE-----------------LSVSDNQLASLPAL---------------PSE 162

Query: 753 LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQL 812
           L ++     N  +  +P+  + L+ L   ++S+N     +P     +  L + +   N+L
Sbjct: 163 LCKL-WAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLPTLPSELYKLWAYN---NRL 213

Query: 813 SGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASS 853
           +  +P   S L     L +S N LT      ++L+    S 
Sbjct: 214 T-SLPALPSGLK---ELIVSGNRLTSLPVLPSELKELMVSG 250

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 3e-22
 Identities = 66/433 (15%), Positives = 139/433 (32%), Gaps = 74/433 (17%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN 275
            +      +  ++     ++    +TLT+LD   +   +  +   +  L  L  L    N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTG-IEKLTGLTKLICTSN 74

Query: 276 NFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMAS 335
           N    +   L   T+L +L  DSN+  +++   +    +L  L    N L    +     
Sbjct: 75  NITT-LD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPL 128

Query: 336 LCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYL 395
                                           L  L    ++++      +     L  L
Sbjct: 129 --------------------------------LTYLNCARNTLT---EIDVSHNTQLTEL 153

Query: 396 DLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPS 455
           D   N  +  +  +    + L  +D S+N++  ++ +      L  L     ++ ++   
Sbjct: 154 DCHLNKKITKLDVT--PQTQLTTLDCSFNKITELDVSQNK--LLNRLNCDTNNI-TKLD- 207

Query: 456 WLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLS 515
            L+    L +LD S + +T     I  +  +Q+   D S N +     +++  ++L  L 
Sbjct: 208 -LNQNIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVNPL--TELDVSTLSKLTTLH 260

Query: 516 LGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG-E 573
                    + L   + LI            +            +L  L  +   +   +
Sbjct: 261 CIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELD------VTHNTQLYLLDCQAAGITELD 313

Query: 574 LTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLT 633
           L+        L+ L L+N + T  L +S      L+SL     ++     S+    AL  
Sbjct: 314 LSQN----PKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQ-DFSSVGKIPALNN 365

Query: 634 LDVGENEFVENIP 646
               E + +    
Sbjct: 366 NFEAEGQTITMPK 378

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.1 bits (237), Expect = 1e-20
 Identities = 73/435 (16%), Positives = 134/435 (30%), Gaps = 54/435 (12%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
           S   L  L+ LD   +    +     I  +  L  L  +      +    L   +NL YL
Sbjct: 37  SEEQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYL 90

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
               N L   +   +  L+ L  L+     L+K        +  P L  L  +R  L  +
Sbjct: 91  ACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDV-----SQNPLLTYLNCARNTLTEI 142

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
               +++ + LT LD   N          V    QL  LD   N     +   +     L
Sbjct: 143 D---VSHNTQLTELDCHLN---KKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLL 193

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQ 351
             L  D+N   + +   L +  +L  L  S+N L       +  L  L     S   L++
Sbjct: 194 NRLNCDTNNI-TKLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTE 247

Query: 352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLG 411
                         S L  L    + +       L     L Y        +  +  +  
Sbjct: 248 LDVSTL--------SKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELDVT-- 294

Query: 412 HLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS 471
           H + L  +D     +  ++ +  P  +L  L L +  L +     +     L  L    +
Sbjct: 295 HNTQLYLLDCQAAGITELDLSQNP--KLVYLYLNNTEL-TELD--VSHNTKLKSLSCVNA 349

Query: 472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGA---LPLI 528
            I     ++       +     +  Q    +P  T       +++  +        + + 
Sbjct: 350 HIQ-DFSSV--GKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

Query: 529 SSNLIELDFSNNSIS 543
             +    D + N+I+
Sbjct: 406 PGDGGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 62/461 (13%), Positives = 132/461 (28%), Gaps = 94/461 (20%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
           F +         +    I      L+TL  +D   + +       +   +  T       
Sbjct: 20  FASEVAAAFEMQAT-DTISEE--QLATLTSLDCHNSSITD-----MTGIEKLT------- 64

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
                         L  L  + + IT     +  S  + +  L    N++     ++T  
Sbjct: 65  -------------GLTKLICTSNNIT----TLDLSQNTNLTYLACDSNKLTN--LDVTPL 105

Query: 509 AQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN 568
            +L  L+  +N  +      +  L  L+ + N+++               +L  L    N
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDV-------SHNTQLTELDCHLN 158

Query: 569 FLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNC 628
               +L         L  LD S NK T    + +     L  L+   NN+  T   L   
Sbjct: 159 KKITKLDVT--PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNI--TKLDLNQN 211

Query: 629 TALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN 688
             L  LD   N+    I        +++       N    L    +  L+ L  +     
Sbjct: 212 IQLTFLDCSSNKL-TEIDV---TPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQT 264

Query: 689 NLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYK 748
           +L  E+   + +   ++   +   + I+   + +                          
Sbjct: 265 DLL-EID--LTHNTQLIYFQAEGCRKIKELDVTH-------------------------- 295

Query: 749 CILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFS 808
                + ++D      +    L+++    L    L+N   T  +   +     L+S+   
Sbjct: 296 --NTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347

Query: 809 LNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSF 849
              +  +   S+  +  LN+   +          +    S 
Sbjct: 348 NAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 5e-20
 Identities = 70/440 (15%), Positives = 134/440 (30%), Gaps = 70/440 (15%)

Query: 421 LSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNI 480
           L   +    ND W P    A+       + +           L  LD   S IT  +  I
Sbjct: 3   LKAGQTQSFND-WFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI 60

Query: 481 FWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSN 539
                + +  L  + N I     +L+    L  L+  SN  +  L +   + L  L+   
Sbjct: 61  --EKLTGLTKLICTSNNI--TTLDLSQNTNLTYLACDSNKLT-NLDVTPLTKLTYLNCDT 115

Query: 540 NSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLP 599
           N ++            +   L +L    N L  E+     +   L  LD   NK    L 
Sbjct: 116 NKLTKLDV-------SQNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD 165

Query: 600 ISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVL 659
           ++      L +L    N ++     +     L  L+   N  +  +      +  ++  L
Sbjct: 166 VT--PQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNN-ITKLDL---NQNIQLTFL 217

Query: 660 ILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQF 719
              SNK   +    +  L  L   D + N L+               L+      +    
Sbjct: 218 DCSSNKLTEI---DVTPLTQLTYFDCSVNPLT--------------ELDVSTLSKLTT-- 258

Query: 720 LLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ 779
            L+  +     +                  + +  ++I F          L+VT+   L 
Sbjct: 259 -LHCIQTDLLEI-----------------DLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300

Query: 780 SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK 839
             +      T      +     L  +  +  +L+ E+   +S  T L  L+  N ++   
Sbjct: 301 LLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-D 353

Query: 840 IPSSTQLQSFDASSYAGNDL 859
             S  ++ + + +  A    
Sbjct: 354 FSSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.3 bits (175), Expect = 5e-13
 Identities = 46/265 (17%), Positives = 84/265 (31%), Gaps = 29/265 (10%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             +     L+ LD S+N    + + +       L  LN         +   L     L +
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDVSQNK----LLNRLNCDTNNIT-KLD--LNQNIQLTF 216

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           LD S N L   ++     L+ L   D S   L++         TL  L  L   +  L  
Sbjct: 217 LDCSSNKLTEIDVT---PLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTDLLE 268

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           +    + + + L                  V    QL  LD +       +   L     
Sbjct: 269 ID---LTHNTQLIYFQAEGC---RKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPK 319

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLS 350
           L +L L++    + +   +    +L+SL   N  +Q     S+  +  L +   +  +  
Sbjct: 320 LVYLYLNNTEL-TELD--VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTI 374

Query: 351 QEISEIFDIFSGCVSSGLEILVLRG 375
               E     S  ++   ++L   G
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFG 399

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.2 bits (240), Expect = 6e-22
 Identities = 55/206 (26%), Positives = 77/206 (37%), Gaps = 8/206 (3%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY-VN 201
             + + L   +   +         NL  L L  N L   +     GL+ L+ LDLS    
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV 261
           L          + L  L  L L RC L  L P      + L  L L  N      +P+  
Sbjct: 93  LRSVDP--ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--QALPDDT 148

Query: 262 F-GLIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLG 319
           F  L  L  L L  N     +PE   + L SL  LLL  NR     P+      RL +L 
Sbjct: 149 FRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 320 VSNNSLQGRVIRSMASLCNLRSVMLS 345
           +  N+L      ++A L  L+ + L+
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 55/217 (25%), Positives = 75/217 (34%), Gaps = 21/217 (9%)

Query: 119 LSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLSWNF 177
              + L  N    V    F  +  NL  L L        I       L+ L+ LDLS N 
Sbjct: 34  SQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN- 90

Query: 178 LYVENLWWLP-----GLSFLKDLDLSYVNLSK-ASDWLRVTNTLPSLVKLRLSRCQLHHL 231
                L  +      GL  L  L L    L +      R    L +L  L L    L  L
Sbjct: 91  ---AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQAL 144

Query: 232 PPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEG-LQNLT 289
           P     +   LT L L  N+   S VP   F GL  L  L L +N     +     ++L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLG 201

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
            L  L L +N  ++     L     L+ L +++N   
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 51/218 (23%), Positives = 79/218 (36%), Gaps = 15/218 (6%)

Query: 212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFL 270
                +  ++ L   ++ H+P  +      LT L L  N    + +    F GL  L  L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQL 85

Query: 271 DLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV 329
           DL  N     +       L  L  L LD        P        L+ L + +N+LQ   
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 330 IRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGHLTYKL 386
             +   L NL  + L   ++   + E    F G  S  L+ L+L     + V  H    L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRI-SSVPE--RAFRGLHS--LDRLLLHQNRVAHVHPHAFRDL 200

Query: 387 GQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN 424
                L  L L  N++      +L  L  LQ++ L+ N
Sbjct: 201 ---GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 45/196 (22%), Positives = 70/196 (35%), Gaps = 8/196 (4%)

Query: 166 SNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
           +  Q + L  N +             L  L L    L++          L  L +L LS 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--AAFTGLALLEQLDLSD 89

Query: 226 -CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPE 283
             QL  + P        L TL L         +   +F GL  L +L L+ N  Q  +P+
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQA-LPD 146

Query: 284 G-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
              ++L +L HL L  NR +S         + L+ L +  N +      +   L  L ++
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 343 MLSCVKLSQEISEIFD 358
            L    LS   +E   
Sbjct: 207 YLFANNLSALPTEALA 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 47/166 (28%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDL 173
            L  L  LDLS N       P     +G L  L+L        + P     L+ LQYL L
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL 136

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
             N L          L  L  L L    +S   +  R    L SL +L L + ++ H+ P
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 234 LAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQ 278
            A  +   L TL L  N    S +P      L  L +L L  N + 
Sbjct: 195 HAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 48/239 (20%), Positives = 71/239 (29%), Gaps = 41/239 (17%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
                 + L  N I      S      L  + L  N              LA +      
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-------------VLARID----- 72

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LT 506
                 +       L  LDLS +    S+    +    +++ L L    +  ++      
Sbjct: 73  -----AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR 126

Query: 507 NAAQLEVLSLGSNSFSGALPLIS----SNLIELDFSNN---SISGSIFHFICYRAHELKK 559
             A L+ L L  N+   ALP  +     NL  L    N   S+    F         L  
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF-------RGLHS 178

Query: 560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
           L  L L  N +       + +   LM L L  N  +     +L  L +LQ L L  N  
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 46/234 (19%), Positives = 74/234 (31%), Gaps = 39/234 (16%)

Query: 464 NYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 522
                   G+  ++P  I     +    + L  N+I                 + + SF 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP----AASQRIFLHGNRIS---------------HVPAASFR 53

Query: 523 GALPLISSNLIELDFSNNSISGSIFHFICYRA-HELKKLQFLYLRGNFLQGEL-TDCWMN 580
                   NL  L   +N ++      I   A   L  L+ L L  N     +    +  
Sbjct: 54  AC-----RNLTILWLHSNVLA-----RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 581 YQNLMILDLSNNKFTGNLPI-SLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVG 637
              L  L L        L       L +LQ L+L+ N L   +     ++   L  L + 
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
            N    ++P         +  L+L  N+   + P    DL  L  + L  NNLS
Sbjct: 162 GNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 52/239 (21%), Positives = 86/239 (35%), Gaps = 46/239 (19%)

Query: 463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNS 520
              + L  + I+  +P   + +   + +L L  N +  +I     T  A LE L L  N+
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91

Query: 521 FSGALPLIS----SNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQGE 573
              ++   +      L  L         +   +F         L  LQ+LYL+ N LQ  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-------GLAALQYLYLQDNALQAL 144

Query: 574 LTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTAL 631
             D + +  NL  L L  N+ +     +   L SL  L L +N ++  +H    ++   L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRL 203

Query: 632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690
           +TL                          L +N   +L  + L  L  LQ + L DN  
Sbjct: 204 MTLY-------------------------LFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 47/256 (18%), Positives = 77/256 (30%), Gaps = 53/256 (20%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENE 640
               + L  N+ +     S  +  +L  L L  N L+  I +        L  LD+ +N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHN 700
            + ++         R+  L L       L P     LA LQ + L DN L         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS 760
           L  +  L                                           L+  RI    
Sbjct: 152 LGNLTHLF------------------------------------------LHGNRISSVP 169

Query: 761 KNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM 820
           +  F G        L +L    L  N      P +   +  L ++    N LS    +++
Sbjct: 170 ERAFRG--------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 821 SSLTYLNHLNLSNNNL 836
           + L  L +L L++N  
Sbjct: 222 APLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
           +  DL +L++L L  N    V   R    + +L  L L   +   + P    +L  L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVP-ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 172 DLSWNFLYVENLWWLP-----GLSFLKDLDLS 198
            L  N     NL  LP      L  L+ L L+
Sbjct: 207 YLFAN-----NLSALPTEALAPLRALQYLRLN 233

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.1 bits (244), Expect = 3e-21
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 45/232 (19%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNL---------- 165
           +   S L L+  +     +P  +     +  L ++    +  +P    +L          
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLDACDNRL 112

Query: 166 -------SNLQYLDLSWNFLYVENLWWLP-GLSFLKDLDLSYVNLSKASDWLRVTNTLPS 217
                  ++L++LD+  N      L  LP   + L+ ++     L+       +     S
Sbjct: 113 STLPELPASLKHLDVDNN-----QLTMLPELPALLEYINADNNQLT------MLPELPTS 161

Query: 218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL----VFLDLR 273
           L  L +   QL  LP L      +L  LD+  N      +P             +F   R
Sbjct: 162 LEVLSVRNNQLTFLPEL----PESLEALDVSTNLL--ESLPAVPVRNHHSEETEIFFRCR 215

Query: 274 RNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
            N     IPE + +L     ++L+ N  +S I   L +              
Sbjct: 216 ENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.7 bits (235), Expect = 3e-20
 Identities = 51/274 (18%), Positives = 101/274 (36%), Gaps = 29/274 (10%)

Query: 376 SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIP 435
           S           +++       + N  V  +   L  ++    + L+   L+ + DN +P
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDN-LP 79

Query: 436 PFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSF 495
           P Q+  L +    L S  P        L YLD   + ++ ++P +     + +  LD+  
Sbjct: 80  P-QITVLEITQNALIS-LPELP---ASLEYLDACDNRLS-TLPELP----ASLKHLDVDN 129

Query: 496 NQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAH 555
           NQ+   +P L   A LE ++  +N  +  LP + ++L  L   NN ++            
Sbjct: 130 NQLT-MLPELP--ALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFL--------PE 177

Query: 556 ELKKLQFLYLRGNFLQG---ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 612
             + L+ L +  N L+           + +  +      N+ T ++P ++ SL    ++ 
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 613 LRKNNLSGTIHSLKNCTALLTLDVGENEFVENIP 646
           L  N LS  I    +         G   +     
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 72/447 (16%), Positives = 129/447 (28%), Gaps = 64/447 (14%)

Query: 407 PFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYL 466
            FSL   S    I  +Y +     D W    + A  G       S     L      + L
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWE---KQALPGENRNEAVSLLKECL--INQFSEL 64

Query: 467 DLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALP 526
            L+   ++ S+P+       QI VL+++ N +   +P L   A LE L    N  S  LP
Sbjct: 65  QLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLPELP--ASLEYLDACDNRLS-TLP 116

Query: 527 LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMI 586
            + ++L  LD  NN ++                L+++    N L   L +      +L +
Sbjct: 117 ELPASLKHLDVDNNQLT--------MLPELPALLEYINADNNQLT-MLPELP---TSLEV 164

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIP 646
           L + NN+ T  LP    SL   ++L +  N L                ++          
Sbjct: 165 LSVRNNQLTF-LPELPESL---EALDVSTNLLESLPAVPVRNHHSEETEI---------- 210

Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT 706
                          R N+   + P+ +  L     + L DN LS    R   + +    
Sbjct: 211 -----------FFRCRENRITHI-PENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQP 257

Query: 707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVM--KGRAAEYKCILNLVRIIDFSKNNF 764
                            +     A  +            +  +    +      FS    
Sbjct: 258 DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD 317

Query: 765 SGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT 824
                +   N    +           ++   +  + +   +      ++ +  +S     
Sbjct: 318 RLSDTVSARNTSGFRE----------QVAAWLEKLSASAELRQQSFAVAADATESCEDRV 367

Query: 825 YLNHLNLSNNNLTGKIPSSTQLQSFDA 851
            L   NL    L  +           A
Sbjct: 368 ALTWNNLRKTLLVHQASEGLFDNDTGA 394

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 26/197 (13%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
              L YLD   N      +P       +L++L++   Q   M+P     L   +Y++   
Sbjct: 99  PASLEYLDACDNRLS--TLPE---LPASLKHLDVDNNQLT-MLPELPALL---EYINADN 149

Query: 176 NFLYVENLWWLP-GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL 234
           N L +     LP   + L+ L +    L+   +         SL  L +S   L  LP +
Sbjct: 150 NQLTM-----LPELPTSLEVLSVRNNQLTFLPELP------ESLEALDVSTNLLESLPAV 198

Query: 235 AIANFS---TLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
            + N     T        N+   + +P  +  L     + L  N     I E L   T+ 
Sbjct: 199 PVRNHHSEETEIFFRCRENRI--THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

Query: 292 KHLLLDSNRFNSSIPNW 308
                    F+ S    
Sbjct: 257 PDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.8 bits (186), Expect = 3e-14
 Identities = 57/320 (17%), Positives = 106/320 (33%), Gaps = 62/320 (19%)

Query: 525 LPLISSNLIEL--DFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ 582
           + L  +N   L  +   N+IS   +        + +K        N     L +C +N  
Sbjct: 3   IMLPINNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN-- 59

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSL-KNCTALLTLDVGENEF 641
               L L+    + +LP +L     +  L + +N L     SL +   +L  LD  +N  
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI----SLPELPASLEYLDACDNRL 112

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNL 701
              +P    E  + +  L + +N+   L P+    L ++   +  +N L+  +P    +L
Sbjct: 113 -STLP----ELPASLKHLDVDNNQLTML-PELPALLEYI---NADNNQLT-MLPELPTSL 162

Query: 702 RAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSK 761
                             +L       T   L +    ++         L++        
Sbjct: 163 E-----------------VLSVRNNQLTF--LPELPESLE--------ALDV-------S 188

Query: 762 NNFSGKIPLEVTNLKALQS----FNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP 817
            N    +P         +     F    N  T  IPE+I ++    +I    N LS  I 
Sbjct: 189 TNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 818 QSMSSLTYLNHLNLSNNNLT 837
           +S+S  T     +      +
Sbjct: 248 ESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 3e-13
 Identities = 51/340 (15%), Positives = 95/340 (27%), Gaps = 70/340 (20%)

Query: 122 LDLSYNDFQGV--QIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLY 179
            +  YN   G                    +  + V ++   L  ++    L L+     
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRL--- 69

Query: 180 VENLWWLPG--LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIA 237
             NL  LP      +  L+++   L        +     SL  L     +L  LP L   
Sbjct: 70  --NLSSLPDNLPPQITVLEITQNALIS------LPELPASLEYLDACDNRLSTLPEL--- 118

Query: 238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLD 297
             ++L  LD+  NQ   + +P        L +++   N     +PE   +L  L    + 
Sbjct: 119 -PASLKHLDVDNNQL--TMLPE---LPALLEYINADNNQLTM-LPELPTSLEVLS---VR 168

Query: 298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIF 357
           +N+    +P        LE+L VS N L+  +        +                   
Sbjct: 169 NNQLTF-LPELP---ESLEALDVSTNLLE-SLPAVPVRNHHSEET--------------- 208

Query: 358 DIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQ 417
                           R + ++ H+   +        + L +N +   I  SL   +   
Sbjct: 209 ----------EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT--- 254

Query: 418 FIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWL 457
                  + +                  H  L     +W 
Sbjct: 255 ------AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.7 bits (230), Expect = 2e-20
 Identities = 56/294 (19%), Positives = 96/294 (32%), Gaps = 34/294 (11%)

Query: 263 GLIQLVFLDLRRNNFQGPIP-EGLQNLTSLKHLLLDSNRFNSSIPNWLYRF---NRLESL 318
           G   L +L  R +          +    SLK L + + R  S I     R    + L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 319 GVSNNSLQGRVIRSMASLC--NLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS 376
            + N  + G     +      +L  + L  V  +   + + ++    +  GL++L +  +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ-WLKPGLKVLSIAQA 159

Query: 377 SVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS----LGHLSTLQFIDLSYNELNGMNDN 432
                   ++  F  L  LDLS+N  +G              TLQ + L    +      
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME----- 214

Query: 433 WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLD 492
                                 +   ++  L  LDLS++ +  +         SQ+  L+
Sbjct: 215 ---------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 493 LSFNQIHGQIPNLTNAAQLEVLSLGSNSFSG-ALPLISSNLIELDFSNNSISGS 545
           LSF  +      L   A+L VL L  N       P     +  L    N    S
Sbjct: 260 LSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 40/208 (19%), Positives = 65/208 (31%), Gaps = 17/208 (8%)

Query: 105 LVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFI-----CSMGNLRYLNLSYTQFVGMIP 159
           + G   P LL+        L+  +        ++          L+ L+++    +    
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 160 PQLGNLSNLQYLDLSWNFL----YVENLWWLPGLSFLKDLDLSYVNLSKASDWL-RVTNT 214
            Q+     L  LDLS N       + +         L+ L L    +   S     +   
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 215 LPSLVKLRLSRCQLHHLPP-LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLR 273
              L  L LS   L       +    S L +L+L +       VP  +    +L  LDL 
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGLPA--KLSVLDLS 282

Query: 274 RNNFQGPIPEGLQNLTSLKHLLLDSNRF 301
            N      P     L  + +L L  N F
Sbjct: 283 YNRLDR-NPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.2 bits (208), Expect = 1e-17
 Identities = 41/254 (16%), Positives = 73/254 (28%), Gaps = 20/254 (7%)

Query: 456 WLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI----HGQIPNLTNAAQL 511
                + L YL                  +  +  L +   +I          +   + L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 512 EVLSLGSNSFSGALP-----LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLR 566
           + L+L +   +G  P         +L  L+  N S +         +      L+ L + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 567 GNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPIS----LGSLISLQSLHLRKNNLS--- 619
                    +    +  L  LDLS+N   G   +          +LQ L LR   +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 620 -GTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA 678
                       L  LD+  N   +       +  S++  L L       +        A
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPA 274

Query: 679 FLQIVDLADNNLSG 692
            L ++DL+ N L  
Sbjct: 275 KLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 52/251 (20%), Positives = 85/251 (33%), Gaps = 30/251 (11%)

Query: 391 NLYYLDLSNNSIVGPIPFSLGHL---STLQFIDLSYNELNGMNDNWIPPF---QLATLGL 444
           +L  L +    I   I F    +   S LQ + L   E+ G     +       L  L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 445 RHCHLGSRFPSWLHSQ----KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHG 500
           R+    +R       Q      L  L ++ +    +           +  LDLS N   G
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELG 187

Query: 501 QIPNLTNAA-----QLEVLSLGSNSFSGALPLISS------NLIELDFSNNSISGSIFHF 549
           +   ++         L+VL+L +        + S+       L  LD S+NS+  +    
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 550 ICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ 609
            C       +L  L L    L+ ++         L +LDLS N+     P     L  + 
Sbjct: 248 SCDW---PSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPSPDE-LPQVG 299

Query: 610 SLHLRKNNLSG 620
           +L L+ N    
Sbjct: 300 NLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 4e-14
 Identities = 49/278 (17%), Positives = 80/278 (28%), Gaps = 50/278 (17%)

Query: 164 NLSNLQYLDLSWNFLYVENLWWLP---GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVK 220
              +L+ L +    +    L+      G+S L++L L  + ++  +    +  T P L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 221 LRLSRCQL----HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN 276
           L L           L  L       L  L +       +F    V     L  LDL  N 
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNP 184

Query: 277 FQGPIPEG----LQNLTSLKHLLLDSNRFNS---SIPNWLYRFNRLESLGVSNNSLQGRV 329
             G              +L+ L L +    +             +L+ L +S+NSL+   
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 330 IRSMASLC-NLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQ 388
                     L S+ LS       + ++                              G 
Sbjct: 245 GAPSCDWPSQLNSLNLS----FTGLKQVPK----------------------------GL 272

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNEL 426
              L  LDLS N +    P     L  +  + L  N  
Sbjct: 273 PAKLSVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 48/305 (15%), Positives = 84/305 (27%), Gaps = 58/305 (19%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ---LGNLSNLQYLDLS 174
            L  +D   +  Q   I + +    +L+ L +   +    I      +  +S LQ L L 
Sbjct: 48  LLKRVDTEADLGQFTDIIKSL----SLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 175 WNFLYVENLWWLPGLSF--LKDLDLSYVNLSKASDWLRV--TNTLPSLVKLRLSRCQLHH 230
              +       L   +   L  L+L  V+ +    WL        P L  L +++    +
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 231 LPPLAIANFSTLTTLDLLYNQF------DNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG 284
                +  F  L+TLDL  N         ++  P     L  L   +       G     
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 285 LQNLTSLKHLLLDSNRFNSSIPNWLYRF-NRLESLGVSNNSLQGRVIRSMASLCNLRSVM 343
                 L+ L L  N    +       + ++L SL +S   L                  
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL------------------ 265

Query: 344 LSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKNLYYLDLSNN 400
                               + + L +L L                 +   +  L L  N
Sbjct: 266 --------------KQVPKGLPAKLSVLDLSYNRLDRNP-----SPDELPQVGNLSLKGN 306

Query: 401 SIVGP 405
             +  
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 54/321 (16%), Positives = 89/321 (27%), Gaps = 55/321 (17%)

Query: 525 LPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584
           L     +L  L    ++ +         ++  LK+L     R            +    L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 585 MILDLSNNKFTGNLPISLGSLI--SLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFV 642
             L L N + TG  P  L       L  L+LR  + +     L      L          
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG------- 150

Query: 643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP----RCI 698
                        + VL +      +   + +     L  +DL+DN   GE       C 
Sbjct: 151 -------------LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 699 HNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIID 758
                +  L                        L    +    G  +        ++ +D
Sbjct: 198 LKFPTLQVLA-----------------------LRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 759 FSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP 817
            S N+               L S NLS      ++P+ +     L  +D S N+L    P
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNP 290

Query: 818 QSMSSLTYLNHLNLSNNNLTG 838
            S   L  + +L+L  N    
Sbjct: 291 -SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 747 YKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI-------PESIGAM 799
            + +   ++++  ++ +       +V    AL + +LS+N   G         P     +
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 800 RSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQL 846
           + L   +  +   SG      ++   L  L+LS+N+L     + +  
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 30/147 (20%), Positives = 44/147 (29%), Gaps = 16/147 (10%)

Query: 89  FTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQ--IPRFICSMGNLRY 146
            +  DLS +       L+  + P       L  L L     +           +   L+ 
Sbjct: 175 LSTLDLSDNPELGERGLISALCPL--KFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232

Query: 147 LNLSYTQFVGMIPPQL-GNLSNLQYLDLSWNFLYVENLWWLPGLSF--LKDLDLSYVNLS 203
           L+LS+               S L  L+LS+       L  +P      L  LDLSY  L 
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-----GLKQVPKGLPAKLSVLDLSYNRLD 287

Query: 204 KASDWLRVTNTLPSLVKLRLSRCQLHH 230
           +          LP +  L L       
Sbjct: 288 RNPSPDE----LPQVGNLSLKGNPFLD 310

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 4e-20
 Identities = 53/261 (20%), Positives = 95/261 (36%), Gaps = 31/261 (11%)

Query: 386 LGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ----LAT 441
              F      +L   S+   +      L+++  I  + +++       +   Q    +  
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-----VQGIQYLPNVTK 69

Query: 442 LGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQ 501
           L L    L    P  L + K+L +L L  + I   + ++      ++  L L  N I   
Sbjct: 70  LFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSL--KDLKKLKSLSLEHNGIS-D 123

Query: 502 IPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKL 560
           I  L +  QLE L LG+N  +    L   + L  L   +N IS  I          L KL
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPL-----AGLTKL 177

Query: 561 QFLYLRGNFLQGELTDCWM--NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
           Q LYL  N     ++D       +NL +L+L + +          +L+   ++     +L
Sbjct: 178 QNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 619 SGTIHSLKNCTALLTLDVGEN 639
             T   + +       +V  +
Sbjct: 234 V-TPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.6 bits (206), Expect = 1e-16
 Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 22/231 (9%)

Query: 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLD 172
                     +L                + ++  +  + +    +    +  L N+  L 
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 71

Query: 173 LSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP 232
           L+ N L   ++  L  L  L  L L    +      L     L  L  L L    +  + 
Sbjct: 72  LNGNKL--TDIKPLTNLKNLGWLFLDENKIKD----LSSLKDLKKLKSLSLEHNGISDIN 125

Query: 233 PLAIANFSTLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
            L   +   L +L L  N+  + + +      L +L  L L  N         L  LT L
Sbjct: 126 GL--VHLPQLESLYLGNNKITDITVLSR----LTKLDTLSLEDNQISD--IVPLAGLTKL 177

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
           ++L L  N   S +   L     L+ L + +     + I   ++L    +V
Sbjct: 178 QNLYLSKNHI-SDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.6 bits (206), Expect = 1e-16
 Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 20/217 (9%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            +  +L  +  +  + +D + VQ    I  + N+  L L+  +   + P  L NL NL +
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L L  N   +++L  L  L  LK L L +  +S     +     LP L  L L   ++  
Sbjct: 92  LFLDEN--KIKDLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKITD 145

Query: 231 LPPLAIANFSTLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
           +  L  +  + L TL L  NQ  +   +      L +L  L L +N+        L  L 
Sbjct: 146 ITVL--SRLTKLDTLSLEDNQISDIVPLAG----LTKLQNLYLSKNHIS--DLRALAGLK 197

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
           +L  L L S    +   N         ++  ++ SL 
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 3e-16
 Identities = 53/269 (19%), Positives = 92/269 (34%), Gaps = 54/269 (20%)

Query: 162 LGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKL 221
               +     +L      V +      L+ +  +  +  ++      ++    LP++ KL
Sbjct: 17  DDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKS----VQGIQYLPNVTKL 70

Query: 222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPI 281
            L+  +L  + PL   N   L  L L  N+            +  L              
Sbjct: 71  FLNGNKLTDIKPLT--NLKNLGWLFLDENK------------IKDL-------------- 102

Query: 282 PEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
              L++L  LK L L+ N   S I   L    +LESL + NN +    I  ++ L  L +
Sbjct: 103 -SSLKDLKKLKSLSLEHNGI-SDING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDT 157

Query: 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKNLYYLDLS 398
           + L       +IS+I    +G     L+ L L     S +       L   KNL  L+L 
Sbjct: 158 LSLE----DNQISDI-VPLAGLTK--LQNLYLSKNHISDLRA-----LAGLKNLDVLELF 205

Query: 399 NNSIVGPIPFSLGHLSTLQFIDLSYNELN 427
           +   +        +L     +  +   L 
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.5 bits (198), Expect = 9e-16
 Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 24/211 (11%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRF--ICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDL 173
           L +++ L L+ N     ++     + ++ NL +L L   + +  +   L +L  L+ L L
Sbjct: 64  LPNVTKLFLNGN-----KLTDIKPLTNLKNLGWLFLDENK-IKDLSS-LKDLKKLKSLSL 116

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
             N   + ++  L  L  L+ L L    ++     + V + L  L  L L   Q+  + P
Sbjct: 117 EHN--GISDINGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQISDIVP 170

Query: 234 LAIANFSTLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK 292
           L  A  + L  L L  N   +   +      L  L  L+L              NL    
Sbjct: 171 L--AGLTKLQNLYLSKNHISDLRALAG----LKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 293 HLLLDSNRFNSSIPNWLYRFNRLESLGVSNN 323
            +        +  P  +      E   V  +
Sbjct: 225 TVKNTDGSLVT--PEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 56/359 (15%), Positives = 112/359 (31%), Gaps = 68/359 (18%)

Query: 263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSN 322
              + +  +L++ +    +      L S+  ++ +++    S+   +     +  L ++ 
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNG 74

Query: 323 NSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHL 382
           N L    I+ + +L NL  + L       +I ++         S L+ L           
Sbjct: 75  NKL--TDIKPLTNLKNLGWLFLD----ENKIKDL---------SSLKDL----------- 108

Query: 383 TYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATL 442
                  K L  L L +N I       L HL  L+ + L  N++  +             
Sbjct: 109 -------KKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV----------- 148

Query: 443 GLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI 502
                         L     L+ L L  + I+  I  +  +  +++  L LS N I   +
Sbjct: 149 --------------LSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSKNHIS-DL 190

Query: 503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQF 562
             L     L+VL L S           SNL+  +   N+    +   I     + +K   
Sbjct: 191 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 250

Query: 563 LYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGT 621
            +    F        +            + + T  L         +    ++    +GT
Sbjct: 251 KWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGT 309

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 1e-12
 Identities = 60/363 (16%), Positives = 107/363 (29%), Gaps = 107/363 (29%)

Query: 491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHF 549
                  I  QI      A+    +L   S + A+     +++ ++  +N+ I       
Sbjct: 4   TITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK------ 56

Query: 550 ICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPIS-LGSLISL 608
                  ++ +Q+L                   N+  L L+ NK T    I  L +L +L
Sbjct: 57  ------SVQGIQYL------------------PNVTKLFLNGNKLTD---IKPLTNLKNL 89

Query: 609 QSLHLRKNNLSGTIHSLKNCTALLTLDVGENEF--VENIPTWIGERFSRMVVLILRSNKF 666
             L L +N +   + SLK+   L +L +  N    +  +         ++  L L +NK 
Sbjct: 90  GWLFLDENKIK-DLSSLKDLKKLKSLSLEHNGISDINGL-----VHLPQLESLYLGNNKI 143

Query: 667 HSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRA 726
             +    L  L  L  + L DN +S      I  L  +  L +                 
Sbjct: 144 TDI--TVLSRLTKLDTLSLEDNQISD-----IVPLAGLTKLQN----------------- 179

Query: 727 PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNN 786
                                         +  SKN+ S    L    LK L    L + 
Sbjct: 180 ------------------------------LYLSKNHISDLRALA--GLKNLDVLELFSQ 207

Query: 787 FFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQL 846
               +       +    ++  +   L      S       +  +    N+   +P  T  
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS-------DDGDYEKPNVKWHLPEFTNE 260

Query: 847 QSF 849
            SF
Sbjct: 261 VSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 37/247 (14%), Positives = 79/247 (31%), Gaps = 66/247 (26%)

Query: 608 LQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFH 667
           +         +   I         +  ++ +   V +  T      + +  +I  ++   
Sbjct: 1   MGETITVSTPIK-QIFPDDAFAETIKDNLKKKS-VTDAVTQ--NELNSIDQIIANNSDIK 56

Query: 668 SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAP 727
           S+  +G+  L  +  + L  N L+      I  L  +  L                    
Sbjct: 57  SV--QGIQYLPNVTKLFLNGNKLT-----DIKPLTNLKNL-------------------- 89

Query: 728 STAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNF 787
                                        +   +N       L+  +LK L+S +L +N 
Sbjct: 90  ---------------------------GWLFLDENKIKDLSSLK--DLKKLKSLSLEHNG 120

Query: 788 FTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT--GKIPSSTQ 845
            +  I   +  +  LES+    N+++      +S LT L+ L+L +N ++    +   T+
Sbjct: 121 IS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 176

Query: 846 LQSFDAS 852
           LQ+   S
Sbjct: 177 LQNLYLS 183

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 8/106 (7%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             L  L  L  L L  N    +     +  +  L+ L LS    +  +   L  L NL  
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDV 201

Query: 171 LDLSWNFLYVENLWWLPGLSF---LKDLDLSYVNLSKASDWLRVTN 213
           L+L       + +     L     +K+ D S V     SD      
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 87.9 bits (218), Expect = 4e-19
 Identities = 50/209 (23%), Positives = 76/209 (36%), Gaps = 19/209 (9%)

Query: 119 LSYLDLSYNDFQGV--QIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWN 176
              ++    +   +   +P+      +   L+LS           L   + L  L+L   
Sbjct: 12  HLEVNCDKRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 177 FLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI 236
            L    L     L  L  LDLS+  L        +  TLP+L  L +S  +L  LP  A+
Sbjct: 66  EL--TKLQVDGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 237 ANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHL 294
                L  L L  N+     +P  +     +L  L L  NN    +P GL   L +L  L
Sbjct: 121 RGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTL 177

Query: 295 LLDSNRFNSSIPNWLYRFNRLESLGVSNN 323
           LL  N    +IP   +  + L    +  N
Sbjct: 178 LLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 43/185 (23%), Positives = 65/185 (35%), Gaps = 34/185 (18%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
              L+ L+L     +  ++     ++  L  L+LS+ Q    +P     L  L  LD+S+
Sbjct: 54  YTRLTQLNLDRA--ELTKLQVDG-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
           N      L  LP  +                        L  L +L L   +L  LPP  
Sbjct: 110 N-----RLTSLPLGAL---------------------RGLGELQELYLKGNELKTLPPGL 143

Query: 236 IANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL 294
           +     L  L L  N    + +P  +  GL  L  L L+ N+    IP+G      L   
Sbjct: 144 LTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 295 LLDSN 299
            L  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 30/193 (15%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF----QLATLGL 444
            K+   L LS N +      +L   + L  ++L   EL       +        L TL L
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-----LQVDGTLPVLGTLDL 84

Query: 445 RHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN 504
            H  L S  P    +   L  LD+S++ +T S+P        ++  L L  N++   +P 
Sbjct: 85  SHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPP 141

Query: 505 --LTNAAQLEVLSLGSNSFSGALPLIS----SNLIELDFSNN---SISGSIFHFICYRAH 555
             LT   +LE LSL +N+ +  LP        NL  L    N   +I    F        
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFF-------- 192

Query: 556 ELKKLQFLYLRGN 568
               L F +L GN
Sbjct: 193 GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 25/195 (12%)

Query: 506 TNAAQLEVLSLGSNSFSGALPL-ISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQ 561
           +  A    ++    + + ALP  +  +   L  S N   + S +             +L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLM-------PYTRLT 58

Query: 562 FLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS-- 619
            L L    L             L  LDLS+N+   +LP+   +L +L  L +  N L+  
Sbjct: 59  QLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 620 --GTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD- 676
             G +  L     L  L +  NE  + +P  +     ++  L L +N    L P GL + 
Sbjct: 116 PLGALRGL---GELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNG 170

Query: 677 LAFLQIVDLADNNLS 691
           L  L  + L +N+L 
Sbjct: 171 LENLDTLLLQENSLY 185

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.0 bits (221), Expect = 4e-19
 Identities = 61/323 (18%), Positives = 105/323 (32%), Gaps = 37/323 (11%)

Query: 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLS 166
              N + L          S        IP  +     ++ L+LS  +   +    L    
Sbjct: 21  ESSNQASLSCDRNGICKGSSGSLN--SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCV 76

Query: 167 NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC 226
           NLQ L L+ N +       +   SF                     ++L SL  L LS  
Sbjct: 77  NLQALVLTSNGINT-----IEEDSF---------------------SSLGSLEHLDLSYN 110

Query: 227 QLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG-L 285
            L +L        S+LT L+LL N +      +    L +L  L +   +    I     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 286 QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
             LT L+ L +D++   S  P  L     +  L +        +   +    ++  + L 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG-HLTYKLGQFK---NLYYLDLSNNS 401
              L        ++ +G  +S ++    R   ++   L   +        L  L+ S N 
Sbjct: 231 DTDLDT--FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288

Query: 402 IVGPIPFSLGHLSTLQFIDLSYN 424
           +          L++LQ I L  N
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 55/281 (19%), Positives = 99/281 (35%), Gaps = 28/281 (9%)

Query: 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQ 251
           +K LDLS   ++  S+         +L  L L+   ++ +   + ++  +L  LDL YN 
Sbjct: 54  VKSLDLSNNRITYISN--SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 252 FDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIP-NW 308
              S + +  F  L  L FL+L  N ++      L  +LT L+ L + +    + I    
Sbjct: 112 L--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 309 LYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGL 368
                 LE L +  + LQ    +S+ S+ N+  ++L   +    +    D     V+S +
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD-----VTSSV 224

Query: 369 EILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNG 428
           E L LR                +        + +      SL    T + + ++   L  
Sbjct: 225 ECLELR----------------DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 429 MNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLS 469
           +         L  L      L S           L  + L 
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 58/275 (21%), Positives = 100/275 (36%), Gaps = 32/275 (11%)

Query: 436 PFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSF 495
              + +L L +  +     S L    +L  L L+ +GI     + F SS   +  LDLS+
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSY 109

Query: 496 NQIHGQIPN--LTNAAQLEVLSLGSNSFS----GALPLISSNLIELDFSNN----SISGS 545
           N +   + +      + L  L+L  N +      +L    + L  L   N      I   
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 546 IFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSL 605
            F         L  L+ L +  + LQ        + QN+  L L   +    L I +   
Sbjct: 169 DFAG-------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 606 ISLQSLHLRKNNL---------SGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRM 656
            S++ L LR  +L         +G  +SL        + + +    + +      + S +
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGL 279

Query: 657 VVLILRSNKFHSLLPKGLCD-LAFLQIVDLADNNL 690
           + L    N+  S +P G+ D L  LQ + L  N  
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 57/317 (17%), Positives = 99/317 (31%), Gaps = 59/317 (18%)

Query: 528 ISSNLIELDFSNNSIS---GSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584
           ++  +  LD SNN I+    S              LQ L L  N +     D + +  +L
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQ-------RCVNLQALVLTSNGINTIEEDSFSSLGSL 102

Query: 585 MILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLS--GTIHSLKNCTALLTLDVGENEF 641
             LDLS N  + NL  S    L SL  L+L  N     G      + T L  L VG  + 
Sbjct: 103 EHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNL 701
              I        + +  L + ++   S  PK L  +  +  + L        +   +   
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 702 RAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSK 761
            ++  L                                           L    +  F  
Sbjct: 222 SSVECLE------------------------------------------LRDTDLDTFHF 239

Query: 762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM- 820
           +  S      +      ++  +++     ++ + +  +  L  ++FS NQL   +P  + 
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIF 297

Query: 821 SSLTYLNHLNLSNNNLT 837
             LT L  + L  N   
Sbjct: 298 DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 55/243 (22%), Positives = 82/243 (33%), Gaps = 60/243 (24%)

Query: 467 DLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSN---- 519
             S   +  SIP  +       +  LDLS N+I   I N  L     L+ L L SN    
Sbjct: 37  KGSSGSLN-SIPSGLT----EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT 90

Query: 520 ----SFSGALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQG 572
               SFS        +L  LD S N   ++S S F         L  L FL L GN  + 
Sbjct: 91  IEEDSFSSL-----GSLEHLDLSYNYLSNLSSSWFK-------PLSSLTFLNLLGNPYKT 138

Query: 573 -ELTDCWMNYQNLMILDLSNNKFTGNLPI-SLGSLISLQSLHLRKNNLSG-TIHSLKNCT 629
              T  + +   L IL + N      +       L  L+ L +  ++L      SLK+  
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 630 ALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNN 689
            +  L                          L   +   LL   +   + ++ ++L D +
Sbjct: 199 NVSHLI-------------------------LHMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 690 LSG 692
           L  
Sbjct: 234 LDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 43/270 (15%), Positives = 87/270 (32%), Gaps = 48/270 (17%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENE 640
            +  LDLSNN+ T      L   ++LQ+L L  N ++ TI      +  +L  LD+  N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGL-CDLAFLQIVDLADNNLSGEVP-RCI 698
            + N+ +   +  S +  L L  N + +L    L   L  LQI+ + + +   ++  +  
Sbjct: 112 -LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 699 HNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIID 758
             L  +  L                                           ++   +  
Sbjct: 171 AGLTFLEELE------------------------------------------IDASDLQS 188

Query: 759 FSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQ 818
           +   +      +    L   Q   L   F           +R  +   F  ++LS     
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 819 SMSSLTYLNHLNLSNNNLTGKIPSSTQLQS 848
           S+       ++ +++ +L   +    Q+  
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMKLLNQISG 278

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.9 bits (216), Expect = 7e-19
 Identities = 51/214 (23%), Positives = 78/214 (36%), Gaps = 21/214 (9%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP-----GLSFLKDLDL 197
           + + L+LS+     +      +   LQ LDLS        +  +       LS L  L L
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLIL 83

Query: 198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFV 257
           +   +   +      + L SL KL      L  L    I +  TL  L++ +N    SF 
Sbjct: 84  TGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFK 140

Query: 258 PNWVF-GLIQLVFLDLRRNNFQGPIPEG-LQNLTSLK----HLLLDSNRFNSSIPNWLYR 311
               F  L  L  LDL  N  Q  I    L+ L  +      L L  N   + I    ++
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFK 198

Query: 312 FNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
             RL+ L +  N L+         L +L+ + L 
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 22/209 (10%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQL-GNLSNLQYLDLS 174
              L  LDLS  + Q ++   +  S+ +L  L L+    +  +       LS+LQ L   
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAV 108

Query: 175 WNFLYVENLWWLP-----GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
                  NL  L       L  LK+L++++  +          + L +L  L LS  ++ 
Sbjct: 109 ET-----NLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQ 162

Query: 230 HLPPLAIANFSTLT----TLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG- 284
            +    +     +     +LDL  N    +F+    F  I+L  L L  N  +  +P+G 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLKELALDTNQLKS-VPDGI 219

Query: 285 LQNLTSLKHLLLDSNRFNSSIPNWLYRFN 313
              LTSL+ + L +N ++ S P   Y   
Sbjct: 220 FDRLTSLQKIWLHTNPWDCSCPRIDYLSR 248

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.2 bits (170), Expect = 6e-13
 Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 16/216 (7%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRR 274
            S   L LS   L HL   +  +F  L  LDL   +     + +  +  L  L  L L  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTG 85

Query: 275 NNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLY-RFNRLESLGVSNNSLQGRVIRS 332
           N  Q  +  G    L+SL+ L+       +S+ N+       L+ L V++N +Q   +  
Sbjct: 86  NPIQS-LALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 333 M-ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTY-KLGQFK 390
             ++L NL  + LS  K+ Q I              + +L L        + + + G FK
Sbjct: 144 YFSNLTNLEHLDLSSNKI-QSIYC--TDLRVLHQ--MPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 391 --NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN 424
              L  L L  N +          L++LQ I L  N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 51/232 (21%), Positives = 75/232 (32%), Gaps = 46/232 (19%)

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNN---SISGSI 546
            LDLSFN +                 LGS SF    P     L  LD S     +I    
Sbjct: 32  NLDLSFNPLR---------------HLGSYSFFS-FP----ELQVLDLSRCEIQTIEDGA 71

Query: 547 FHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 606
           +         L  L  L L GN +Q      +    +L  L              +G L 
Sbjct: 72  YQ-------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 607 SLQSLHLRKNNLSGTIHSLK------NCTALLTLDVGENEFVENIPTWIGERFSRMVV-- 658
           +L+ L++  N     I S K      N T L  LD+  N+  ++I         +M +  
Sbjct: 125 TLKELNVAHNL----IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLN 179

Query: 659 --LILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN 708
             L L  N  + +   G      L+ + L  N L          L ++  + 
Sbjct: 180 LSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 47/237 (19%)

Query: 465 YLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-----NLTNAAQLEVLSLGSN 519
            LDLS++ +   + +  + S  ++ VLDLS  +I   I      +L++   L  L L  N
Sbjct: 32  NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH---LSTLILTGN 86

Query: 520 ---SFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG-ELT 575
              S +       S+L +L     +++ S+ +F       LK L+ L +  N +Q  +L 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFP---IGHLKTLKELNVAHNLIQSFKLP 142

Query: 576 DCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ----SLHLRKNNLSGTIHSLKNCTAL 631
           + + N  NL  LDLS+NK        L  L  +     SL L  N ++           L
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN 688
             L                          L +N+  S+       L  LQ + L  N
Sbjct: 203 KELA-------------------------LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 33/144 (22%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQY--- 170
            LK L  L++++N  Q  ++P +  ++ NL +L+LS  +    I    L  L  +     
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

Query: 171 -LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
            LDLS N      + ++   +F +                        L +L L   QL 
Sbjct: 181 SLDLSLN-----PMNFIQPGAFKE----------------------IRLKELALDTNQLK 213

Query: 230 HLPPLAIANFSTLTTLDLLYNQFD 253
            +P       ++L  + L  N +D
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 48/257 (18%), Positives = 78/257 (30%), Gaps = 56/257 (21%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS----GTIHSLKNCTALLTLDVGE 638
           +   LDLS N        S  S   LQ L L +  +     G   SL +   L TL +  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH---LSTLILTG 85

Query: 639 NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL-SGEVPRC 697
           N  ++++        S +  L+       SL    +  L  L+ +++A N + S ++P  
Sbjct: 86  NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRII 757
             NL  +  L+                                          L+  +I 
Sbjct: 145 FSNLTNLEHLD------------------------------------------LSSNKIQ 162

Query: 758 DFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP 817
                +      + + NL      +LS N     I         L+ +    NQL     
Sbjct: 163 SIYCTDLRVLHQMPLLNLS----LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPD 217

Query: 818 QSMSSLTYLNHLNLSNN 834
                LT L  + L  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 55/292 (18%), Positives = 95/292 (32%), Gaps = 83/292 (28%)

Query: 281 IPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR 340
           IP+ L    S K+L L  N          + F  L+ L +S   +Q     +  SL +L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 341 SVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNN 400
           +++L+   +       F                        L+       +L  L     
Sbjct: 80  TLILTGNPIQSLALGAFS----------------------GLS-------SLQKLVAVET 110

Query: 401 SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQ 460
           ++     F +GHL TL+ +++++N              + +          + P +  + 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHN-------------LIQSF---------KLPEYFSNL 148

Query: 461 KHLNYLDLSYSGITGSIP-NIFWSSAS---QIYVLDLSFNQIHGQIPNLTNAAQLEVLSL 516
            +L +LDLS + I  SI                 LDLS N ++                +
Sbjct: 149 TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN---------------FI 192

Query: 517 GSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN 568
              +F          L EL    N +  S+   I  R   L  LQ ++L  N
Sbjct: 193 QPGAFKE------IRLKELALDTNQLK-SVPDGIFDR---LTSLQKIWLHTN 234

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 73/439 (16%), Positives = 133/439 (30%), Gaps = 64/439 (14%)

Query: 267 LVFLDLRRNNFQGP-IPEGLQNLTSLKHLLLDSNRFN----SSIPNWLYRFNRLESLGVS 321
           +  LD++          E L  L   + + LD           I + L     L  L + 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 322 NNSLQGRVIRSMASL-----CNLRSVMLSCVKLSQE-ISEIFDIFSGCVSSGLEILVLRG 375
           +N L    +  +        C ++ + L    L+      +           L+ L L  
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL--PTLQELHLSD 122

Query: 376 SSVSGHLTYKLGQF-----KNLYYLDLSNNSI----VGPIPFSLGHLSTLQFIDLSYNEL 426
           + +       L +        L  L L   S+      P+   L      + + +S N++
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 427 NGMNDNWI------PPFQLATLGLRHCHLGSR----FPSWLHSQKHLNYLDLSYSGITGS 476
           N      +       P QL  L L  C + S         + S+  L  L L  + +   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 477 ----IPNIFWSSASQIYVLDLSFNQIHGQ-----IPNLTNAAQLEVLSLGSN-------- 519
               +       +S++  L +    I  +        L     L+ LSL  N        
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 520 SFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LT 575
                L      L  L   + S + +          + + L  L +  N L+      L 
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 576 DC-WMNYQNLMILDLSNNKFTGNLPISLGSLI----SLQSLHLRKNNLSGT-----IHSL 625
                    L +L L++   + +   SL + +    SL+ L L  N L        + S+
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422

Query: 626 K-NCTALLTLDVGENEFVE 643
           +     L  L + +  + E
Sbjct: 423 RQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.2 bits (214), Expect = 8e-18
 Identities = 79/482 (16%), Positives = 142/482 (29%), Gaps = 99/482 (20%)

Query: 117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQF----VGMIPPQLGNLSNLQYLD 172
             +  LD+   +    +    +  +   + + L            I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 173 LSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL---- 228
           L  N L         G   +  +             L+  +    + KL L  C L    
Sbjct: 63  LRSNEL---------GDVGVHCV----------LQGLQTPSC--KIQKLSLQNCCLTGAG 101

Query: 229 -HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQN 287
              L    +    TL  L L  N   ++ +     GL                    L  
Sbjct: 102 CGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGL--------------------LDP 140

Query: 288 LTSLKHLLLDSNRFNS----SIPNWLYRFNRLESLGVSNNSLQGRVIRSMA-----SLCN 338
              L+ L L+    ++     + + L      + L VSNN +    +R +      S C 
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 339 LRSVMLSCVKLSQE-ISEIFDIFSGCVSSGLEILVLRG-----SSVSGHLTYKLGQFKNL 392
           L ++ L    ++ +   ++  I +   S  L  L L         ++      L     L
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKAS--LRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 393 YYLDLSNNSI----VGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI------PPFQLATL 442
             L +    I     G +   L    +L+ + L+ NEL       +      P  QL +L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318

Query: 443 GLRHCHLGSR----FPSWLHSQKHLNYLDLSYSGITGS----IPNIFWSSASQIYVLDLS 494
            ++ C   +     F S L   + L  L +S + +  +    +        S + VL L+
Sbjct: 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378

Query: 495 FNQIHGQ-----IPNLTNAAQLEVLSLGSNS--------FSGALPLISSNLIELDFSNNS 541
              +           L     L  L L +N            ++      L +L   +  
Sbjct: 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438

Query: 542 IS 543
            S
Sbjct: 439 WS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.5 bits (194), Expect = 3e-15
 Identities = 59/375 (15%), Positives = 122/375 (32%), Gaps = 64/375 (17%)

Query: 364 VSSGLEILVLRGSSVS-GHLTYKLGQFKNLYYLDLSNNSI----VGPIPFSLGHLSTLQF 418
           +S  ++ L ++   +S       L   +    + L +  +       I  +L     L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 419 IDLSYNELNGMNDNWI------PPFQLATLGLRHCHLGSR----FPSWLHSQKHLNYLDL 468
           ++L  NEL  +  + +      P  ++  L L++C L         S L +   L  L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 469 SYSGITGS----IPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGA 524
           S + +  +    +         ++  L L +  +                +      +  
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---------------AASCEPLASV 165

Query: 525 LPLISSNLIELDFSNNSISGSIFHFIC-YRAHELKKLQFLYLRGNFLQGE----LTDCWM 579
           L     +  EL  SNN I+ +    +C        +L+ L L    +  +    L     
Sbjct: 166 LR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 580 NYQNLMILDLSNNKFTGN-----LPISLGSLISLQSLHLRKNNLSGT-----IHSLKNCT 629
           +  +L  L L +NK          P  L     L++L + +  ++          L+   
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 630 ALLTLDVGENEF----VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA------- 678
           +L  L +  NE        +   + E   ++  L ++S  F +         +       
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA---ACCSHFSSVLAQNR 341

Query: 679 FLQIVDLADNNLSGE 693
           FL  + +++N L   
Sbjct: 342 FLLELQISNNRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 72/355 (20%), Positives = 122/355 (34%), Gaps = 65/355 (18%)

Query: 113 LLDLKHLSYLDLSYNDFQ--GVQIPRFICSM-----GNLRYLNLSYTQF----VGMIPPQ 161
           L     L+ L+L  N+    GV     +          ++ L+L          G++   
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHC---VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108

Query: 162 LGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKL 221
           L  L  LQ L LS N L         G + L+ L           + L        L KL
Sbjct: 109 LRTLPTLQELHLSDNLL---------GDAGLQLL----------CEGLLDPQC--RLEKL 147

Query: 222 RLSRCQLHHLPPLAIA----NFSTLTTLDLLYNQFDNSFVPNWVFGL----IQLVFLDLR 273
           +L  C L       +A           L +  N  + + V     GL     QL  L L 
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 274 RNNFQ----GPIPEGLQNLTSLKHLLLDSNRFNSS-----IPNWLYRFNRLESLGVSNNS 324
                      +   + +  SL+ L L SN+          P  L+  +RL +L +    
Sbjct: 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267

Query: 325 LQGRVIRSMASL----CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG 380
           +  +    +  +     +L+ + L+  +L  E + +           LE L ++  S + 
Sbjct: 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 381 ----HLTYKLGQFKNLYYLDLSNNSI----VGPIPFSLGH-LSTLQFIDLSYNEL 426
               H +  L Q + L  L +SNN +    V  +   LG   S L+ + L+  ++
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 60/394 (15%), Positives = 116/394 (29%), Gaps = 63/394 (15%)

Query: 490 VLDLSFNQI-HGQIPNLTNA-AQLEVLSLGSNSFS--GALPLIS-----SNLIELDFSNN 540
            LD+   ++   +   L     Q +V+ L     +      + S       L EL+  +N
Sbjct: 7   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 66

Query: 541 SISGSIFHFICYR-AHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFT 595
            +     H +         K+Q L L+   L G     L+        L  L LS+N   
Sbjct: 67  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126

Query: 596 GNLPISLGSLI-----SLQSLHLRKNNLSGT-----IHSLKNCTALLTLDVGENEF---- 641
                 L   +      L+ L L   +LS          L+       L V  N+     
Sbjct: 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186

Query: 642 VENIPTWIGERFSRMVVLILRSNKFH----SLLPKGLCDLAFLQIVDLADNNLSGEVPRC 697
           V  +   + +   ++  L L S          L   +   A L+ + L  N L       
Sbjct: 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV---- 242

Query: 698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRII 757
              +  +     H    ++  ++            L   L   +            ++ +
Sbjct: 243 --GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-----------LKEL 289

Query: 758 DFSKNNFSGK-----IPLEVTNLKALQSFNLSNNFFTGR----IPESIGAMRSLESIDFS 808
             + N    +         +     L+S  + +  FT          +   R L  +  S
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 809 LNQLSGEIPQSMS-----SLTYLNHLNLSNNNLT 837
            N+L     + +        + L  L L++ +++
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 1e-11
 Identities = 74/455 (16%), Positives = 138/455 (30%), Gaps = 75/455 (16%)

Query: 439 LATLGLRHCHLG-SRFPSWLHSQKHLNYLDLSYSGIT----GSIPNIFWSSASQIYVLDL 493
           + +L ++   L  +R+   L   +    + L   G+T      I +        +  L+L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNL 63

Query: 494 SFNQIHGQ-IPNLTNA-----AQLEVLSLGSNSFS--GALPLIS-----SNLIELDFSNN 540
             N++    +  +         +++ LSL +   +  G   L S       L EL  S+N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 541 SISGSIFHFIC-YRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKF- 594
            +  +    +C        +L+ L L    L       L        +   L +SNN   
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 595 -TGNLPISLG---SLISLQSLHLRKNNLSGT-----IHSLKNCTALLTLDVGENEF---- 641
             G   +  G   S   L++L L    ++          + +  +L  L +G N+     
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 642 VENIPTWIGERFSRMVVLILRSNKFH----SLLPKGLCDLAFLQIVDLADNNLSGEVPRC 697
           +  +   +    SR+  L +            L + L     L+ + LA N L  E    
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE---- 299

Query: 698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRII 757
               R +       G  ++  ++   S   +        L   +           L   +
Sbjct: 300 --GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR----------FL-LEL 346

Query: 758 DFSKNNFSGK------IPLEVTNLKALQSFNLSNNFFTGRIPESIGAM----RSLESIDF 807
             S N             L       L+   L++   +     S+ A      SL  +D 
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPG-SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 808 SLNQLSGEIPQSMSSL-----TYLNHLNLSNNNLT 837
           S N L       +          L  L L +   +
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 39/345 (11%), Positives = 100/345 (28%), Gaps = 83/345 (24%)

Query: 528 ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQN 583
           +S ++  LD     +S + +  +      L++ Q + L    L       ++        
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELL---PLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 584 LMILDLSNNKFTGNLPISLGSLI-----SLQSLHLRKNNLSGT-----IHSLKNCTALLT 633
           L  L+L +N+        +   +      +Q L L+   L+G        +L+    L  
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 634 LDVGENEF----VENIPTWIGERFSRMVVLILRSNKFHS----LLPKGLCDLAFLQIVDL 685
           L + +N      ++ +   + +   R+  L L      +     L   L      + + +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 686 ADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAA 745
           ++N+++                                        +L   L     +  
Sbjct: 178 SNNDINEAG-----------------------------------VRVLCQGLKDSPCQ-- 200

Query: 746 EYKCILNLVRIIDFSKNNFSGK----IPLEVTNLKALQSFNLSNNFFTGRIPESIGAM-- 799
                   +  +       +      +   V +  +L+   L +N         +     
Sbjct: 201 --------LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252

Query: 800 ---RSLESIDFSLNQLSGE----IPQSMSSLTYLNHLNLSNNNLT 837
                L ++      ++ +    + + + +   L  L+L+ N L 
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 53/298 (17%), Positives = 91/298 (30%), Gaps = 54/298 (18%)

Query: 113 LLDLKHLSYLDLSYNDF--QGVQI--PRFICSMGNLRYLNLSYTQF----VGMIPPQLGN 164
           L        L +S ND    GV++       S   L  L L            +   + +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 165 LSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLS 224
            ++L+ L L  N L                 D+    L        + +    L  L + 
Sbjct: 226 KASLRELALGSNKL----------------GDVGMAELCPG-----LLHPSSRLRTLWIW 264

Query: 225 RCQL-----HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLI----QLVFLDLRRN 275
            C +       L    +    +L  L L  N+  +         L+    QL  L ++  
Sbjct: 265 ECGITAKGCGDL-CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 276 NFQG----PIPEGLQNLTSLKHLLLDSNRFNSS----IPNWLYRFN-RLESLGVSNNSLQ 326
           +F           L     L  L + +NR   +    +   L +    L  L +++  + 
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 327 GRVIRSMASL----CNLRSVMLSCVKLSQE-ISEIFDIFSGCVSSGLEILVLRGSSVS 379
                S+A+      +LR + LS   L    I ++ +         LE LVL     S
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR-QPGCLLEQLVLYDIYWS 440

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 55/233 (23%), Positives = 89/233 (38%), Gaps = 22/233 (9%)

Query: 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLD 172
              L +   +    ++            +  +  L+   T  V  I   +  L+NL  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLE 69

Query: 173 LSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP 232
           L  N   + +L  L  L+ + +L+LS   L      +     L S+  L L+  Q+  + 
Sbjct: 70  LKDN--QITDLAPLKNLTKITELELSGNPLKN----VSAIAGLQSIKTLDLTSTQITDVT 123

Query: 233 PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK 292
           PL  A  S L  L L  NQ  N  +   + GL  L +L +            L NL+ L 
Sbjct: 124 PL--AGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSD--LTPLANLSKLT 176

Query: 293 HLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
            L  D N+  S I   L     L  + + NN +    +  +A+  NL  V L+
Sbjct: 177 TLKADDNKI-SDISP-LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 22/217 (10%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            +  DL  ++ L         ++    +  + NL  L L   Q   + P  L NL+ +  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L+LS N L  +N+  + GL  +K LDL+   ++  +        L +L  L L   Q+ +
Sbjct: 90  LELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITN 143

Query: 231 LPPLAIANFSTLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
           + PL  A  + L  L +   Q  + + + N    L +L  L    N         L +L 
Sbjct: 144 ISPL--AGLTNLQYLSIGNAQVSDLTPLAN----LSKLTTLKADDNKISD--ISPLASLP 195

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
           +L  + L +N+ +   P  L   + L  + ++N ++ 
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 52/256 (20%), Positives = 92/256 (35%), Gaps = 28/256 (10%)

Query: 368 LEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELN 427
              +    S+V+  +T        +  L      +       + +L+ L  ++L  N++ 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76

Query: 428 GMNDNWIPPF----QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWS 483
                 + P     ++  L L    L +     +   + +  LDL+ + IT  +  +  +
Sbjct: 77  D-----LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQIT-DVTPL--A 126

Query: 484 SASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSI 542
             S + VL L  NQI   I  L     L+ LS+G+   S   PL + S L  L   +N I
Sbjct: 127 GLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 543 SGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISL 602
           S  I          L  L  ++L+ N +         N  NL I+ L+N   T       
Sbjct: 186 S-DISPL-----ASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYN 237

Query: 603 GSLISLQSLHLRKNNL 618
            +L+    +       
Sbjct: 238 NNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 71/340 (20%), Positives = 120/340 (35%), Gaps = 69/340 (20%)

Query: 162 LGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKL 221
              L+N   +    +   V +      L  +  L      ++     +     L +L+ L
Sbjct: 15  DPALANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTT----IEGVQYLNNLIGL 68

Query: 222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPI 281
            L   Q+  L PL   N + +T L+L  N   N        GL  +  LDL         
Sbjct: 69  ELKDNQITDLAPLK--NLTKITELELSGNPLKNVSAIA---GLQSIKTLDLTSTQITDVT 123

Query: 282 PEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
           P  L  L++L+ L LD N+  ++I   L     L+ L + N  +    +  +A+L  L +
Sbjct: 124 P--LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTT 177

Query: 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKNLYYLDLS 398
           +     K+S +IS +  +        L  + L+    S VS      L    NL+ + L+
Sbjct: 178 LKADDNKIS-DISPLASL------PNLIEVHLKNNQISDVSP-----LANTSNLFIVTLT 225

Query: 399 NNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLH 458
           N +I     F   +L          N + G +   I P  ++  G               
Sbjct: 226 NQTITNQPVFYNNNLVVP-------NVVKGPSGAPIAPATISDNG--------------- 263

Query: 459 SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498
                          T + PN+ W+  S I  +  +FNQ 
Sbjct: 264 ---------------TYASPNLTWNLTSFINNVSYTFNQS 288

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 57/358 (15%), Positives = 110/358 (30%), Gaps = 83/358 (23%)

Query: 496 NQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRA 554
             I+  I      A    ++ G ++ +  +       +  L      ++ +I        
Sbjct: 7   TAIN-VIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGV----- 59

Query: 555 HELKKLQFLYLRGNFLQGELTD--CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLH 612
             L  L  L L+ N    ++TD     N   +  L+LS N    N+  ++  L S+++L 
Sbjct: 60  QYLNNLIGLELKDN----QITDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD 113

Query: 613 LRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK 672
           L    ++  +  L   + L  L +  N+ + NI        + +  L + + +   L   
Sbjct: 114 LTSTQIT-DVTPLAGLSNLQVLYLDLNQ-ITNISPL--AGLTNLQYLSIGNAQVSDL--T 167

Query: 673 GLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAML 732
            L +L+ L  +   DN +S      I  L ++  L                         
Sbjct: 168 PLANLSKLTTLKADDNKISD-----ISPLASLPNL------------------------- 197

Query: 733 LEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI 792
                                   +    N  S   PL   N   L    L+N   T + 
Sbjct: 198 ----------------------IEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQP 233

Query: 793 PESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFD 850
                      +     N + G     ++  T  ++   ++ NLT  + S     S+ 
Sbjct: 234 VFY-------NNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYT 284

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 36/276 (13%), Positives = 80/276 (28%), Gaps = 90/276 (32%)

Query: 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
              N + +    +  T    ++   L  + +L      ++ TI  ++    L+ L+    
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLE---- 69

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH 699
                                L+ N+   L P  L +L  +  ++L+ N L       + 
Sbjct: 70  ---------------------LKDNQITDLAP--LKNLTKITELELSGNPLKN-----VS 101

Query: 700 NLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759
            +  + ++                                               + +D 
Sbjct: 102 AIAGLQSI-----------------------------------------------KTLDL 114

Query: 760 SKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS 819
           +    +   PL    L  LQ   L  N  T      +  + +L+ +     Q+S   P  
Sbjct: 115 TSTQITDVTPLA--GLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP-- 168

Query: 820 MSSLTYLNHLNLSNNNLTG--KIPSSTQLQSFDASS 853
           +++L+ L  L   +N ++    + S   L      +
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKN 204

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 52/258 (20%), Positives = 95/258 (36%), Gaps = 23/258 (8%)

Query: 385 KLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGL 444
               F      +L   S+   +  +   L+++  I  + +++  +      P  +  L L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLP-NVTKLFL 75

Query: 445 RHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN 504
               L    P  L + K+L +L L  + +   + ++      ++  L L  N I   I  
Sbjct: 76  NGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSSL--KDLKKLKSLSLEHNGIS-DING 129

Query: 505 LTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563
           L +  QLE L LG+N  +    L   + L  L   +N IS  I          L KLQ L
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPL-----AGLTKLQNL 183

Query: 564 YLRGNFLQ--GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGT 621
           YL  N +     L       +NL +L+L + +          +L+   ++     +L  T
Sbjct: 184 YLSKNHISDLRALAGL----KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-T 238

Query: 622 IHSLKNCTALLTLDVGEN 639
              + +       +V  +
Sbjct: 239 PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 8e-15
 Identities = 52/286 (18%), Positives = 94/286 (32%), Gaps = 46/286 (16%)

Query: 408 FSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLD 467
           FS    +     +L    +                               +    ++ + 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT-------------------------QNELNSIDQII 52

Query: 468 LSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPL 527
            + S I  S+  I       +  L L+ N++   I  L N   L  L L  N       L
Sbjct: 53  ANNSDIK-SVQGI--QYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSSL 108

Query: 528 IS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMI 586
                L  L   +N IS  I          L +L+ LYL  N +             L  
Sbjct: 109 KDLKKLKSLSLEHNGIS-DINGL-----VHLPQLESLYLGNNKITD--ITVLSRLTKLDT 160

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIP 646
           L L +N+ + ++   L  L  LQ+L+L KN++S  + +L     L  L++   E +    
Sbjct: 161 LSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPI 217

Query: 647 TWIGERFSRMVVL-ILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
                  S +VV   +++     + P+ + D    +  ++  +   
Sbjct: 218 ----NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 48/256 (18%), Positives = 88/256 (34%), Gaps = 43/256 (16%)

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
                 +L    +T ++     +  + I  +  + + I   +  +     +  L L  N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 79

Query: 521 FSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM 579
            +   PL +  NL  L    N +   +         +LKKL+ L L  N +  ++    +
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVK-DLSSL-----KDLKKLKSLSLEHNGIS-DINGL-V 131

Query: 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
           +   L  L L NNK T ++   L  L  L +L L  N +S  I  L   T L  L + +N
Sbjct: 132 HLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH 699
             + ++                          + L  L  L +++L       +      
Sbjct: 189 H-ISDL--------------------------RALAGLKNLDVLELFSQECLNKPINHQS 221

Query: 700 NLRAMVTLNSHAGKAI 715
           NL    T+ +  G  +
Sbjct: 222 NLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 21/204 (10%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLY-VENLWWLPGLSFLKDLDLSYVN 201
                NL        +      L+++  +  + + +  V+ + +LP    +  L L+   
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN---VTKLFLNGNK 79

Query: 202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV 261
           L+     ++    L +L  L L   ++  L  L   +   L +L L +N   +  +   +
Sbjct: 80  LTD----IKPLANLKNLGWLFLDENKVKDLSSL--KDLKKLKSLSLEHNGISD--ING-L 130

Query: 262 FGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVS 321
             L QL  L L  N         L  LT L  L L+ N+  S I   L    +L++L +S
Sbjct: 131 VHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLS 186

Query: 322 NNSLQGRVIRSMASLCNLRSVMLS 345
            N +    +R++A L NL  + L 
Sbjct: 187 KNHI--SDLRALAGLKNLDVLELF 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 22/231 (9%)

Query: 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLD 172
                     +L                + ++  +  + +    +    +  L N+  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 173 LSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP 232
           L+ N   + ++  L  L  L  L L    +      L     L  L  L L    +  + 
Sbjct: 75  LNGN--KLTDIKPLANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSLEHNGISDIN 128

Query: 233 PLAIANFSTLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL 291
            L   +   L +L L  N+  + + +      L +L  L L  N         L  LT L
Sbjct: 129 GL--VHLPQLESLYLGNNKITDITVLSR----LTKLDTLSLEDNQISD--IVPLAGLTKL 180

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
           ++L L  N   S +   L     L+ L + +     + I   ++L    +V
Sbjct: 181 QNLYLSKNHI-SDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 22/216 (10%)

Query: 113 LLDLKHLSYLDLSYNDFQGVQIPRF--ICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
           +  L +++ L L+ N     ++     + ++ NL +L L   +   +    L +L  L+ 
Sbjct: 64  IQYLPNVTKLFLNGN-----KLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKS 116

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L L  N   + ++  L  L  L+ L L    ++     + V + L  L  L L   Q+  
Sbjct: 117 LSLEHN--GISDINGLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQISD 170

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           + PL  A  + L  L L  N   +  +   + GL  L  L+L              NL  
Sbjct: 171 IVPL--AGLTKLQNLYLSKNHISD--LRA-LAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
              +        +  P  +      E   V  +  +
Sbjct: 226 PNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 18/215 (8%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            +  +L  +  +  + +D + VQ    I  + N+  L L+  +   + P  L NL NL +
Sbjct: 40  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L L  N   V++L  L  L  LK L L +  +S     +     LP L  L L   ++  
Sbjct: 95  LFLDEN--KVKDLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKITD 148

Query: 231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
           +  L  +  + L TL L  NQ  +  +   + GL +L  L L +N+        L  L +
Sbjct: 149 ITVL--SRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISD--LRALAGLKN 201

Query: 291 LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
           L  L L S    +   N         ++  ++ SL
Sbjct: 202 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 34/246 (13%)

Query: 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTL 245
               +     +L   +++ A       N L S+ ++  +   +  +  +       +T L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 73

Query: 246 DLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIP--EGLQNLTSLKHLLLDSNRFNS 303
            L  N+  +      +  L  L +L L  N     +     L++L  LK L L+ N   S
Sbjct: 74  FLNGNKLTDIKP---LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGI-S 125

Query: 304 SIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGC 363
            I   L    +LESL + NN +    I  ++ L  L ++ L       +IS+I    +G 
Sbjct: 126 DING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE----DNQISDI-VPLAGL 177

Query: 364 VSSGLEILVLRG---SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFID 420
               L+ L L     S +       L   KNL  L+L +   +        +L     + 
Sbjct: 178 TK--LQNLYLSKNHISDLRA-----LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 421 LSYNEL 426
            +   L
Sbjct: 231 NTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 26/269 (9%)

Query: 162 LGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKL 221
               +     +L      V +      L+ +  +  +  ++            LP++ KL
Sbjct: 20  DDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKSVQGI----QYLPNVTKL 73

Query: 222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPI 281
            L+  +L  + PL  AN   L  L L  N+         +  L +L  L L  N      
Sbjct: 74  FLNGNKLTDIKPL--ANLKNLGWLFLDENKV-KDLSS--LKDLKKLKSLSLEHNGIS--D 126

Query: 282 PEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
             GL +L  L+ L L +N+  + I   L R  +L++L + +N +    I  +A L  L++
Sbjct: 127 INGLVHLPQLESLYLGNNKI-TDITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQN 182

Query: 342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNS 401
           + LS   +S ++  +  + +      L++L L                     +  ++ S
Sbjct: 183 LYLSKNHIS-DLRALAGLKN------LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 402 IVGPIPFSLGHLSTLQFIDLSYNELNGMN 430
           +V P   S       +  ++ ++     N
Sbjct: 236 LVTPEIIS--DDGDYEKPNVKWHLPEFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 49/314 (15%), Positives = 96/314 (30%), Gaps = 80/314 (25%)

Query: 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTD--CWMNYQNLMIL 587
           +  I+ +    S++ ++        +EL  +  +    +    ++          N+  L
Sbjct: 24  AETIKDNLKKKSVTDAVT------QNELNSIDQIIANNS----DIKSVQGIQYLPNVTKL 73

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEF--VENI 645
            L+ NK T   P++  +L +L  L L +N +   + SLK+   L +L +  N    +  +
Sbjct: 74  FLNGNKLTDIKPLA--NLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 646 PTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 705
                    ++  L L +NK   +    L  L  L  + L DN +S      I  L  + 
Sbjct: 131 -----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-----IVPLAGLT 178

Query: 706 TLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFS 765
            L                                               + +  SKN+ S
Sbjct: 179 KL-----------------------------------------------QNLYLSKNHIS 191

Query: 766 GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTY 825
               L    LK L    L +     +       +    ++  +   L    P+ +S    
Sbjct: 192 DLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGD 247

Query: 826 LNHLNLSNNNLTGK 839
               N+  +     
Sbjct: 248 YEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 72/255 (28%)

Query: 589 LSNNKFTGNLPIS----LGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEF--V 642
           L +   T   PI       +       +L+K +++    +     ++  +    ++   V
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSV 61

Query: 643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR 702
           + I     +    +  L L  NK   +  K L +L  L  + L +N +       + +L+
Sbjct: 62  QGI-----QYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVK-----DLSSLK 109

Query: 703 AMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKN 762
            +  L                                               + +    N
Sbjct: 110 DLKKL-----------------------------------------------KSLSLEHN 122

Query: 763 NFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSS 822
             S    L   +L  L+S  L NN  T      +  +  L+++    NQ+S +I   ++ 
Sbjct: 123 GISDINGLV--HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAG 176

Query: 823 LTYLNHLNLSNNNLT 837
           LT L +L LS N+++
Sbjct: 177 LTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             L  L  L  L L  N    +     +  +  L+ L LS    +  +   L  L NL  
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDV 204

Query: 171 LDLSWNFLYVENLWWLPGLSF---LKDLDLSYVNLSKASD 207
           L+L       + +     L     +K+ D S V     SD
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 244

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 20/183 (10%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP-----GLSFLKDLDL 197
           + + L+L   +   +       L+ L+ L L+ N L       LP      L  L+ L +
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-----LPAGIFKELKNLETLWV 92

Query: 198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFV 257
           +   L        V + L +L +LRL R QL  LPP    + + LT L L YN+  +  +
Sbjct: 93  TDNKLQALPI--GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--L 148

Query: 258 PNWVF-GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
           P  VF  L  L  L L  N  +  +PEG    LT LK L LD+N+    +P     F+ L
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQL-KRVPEGA--FDSL 204

Query: 316 ESL 318
           E L
Sbjct: 205 EKL 207

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 55/198 (27%), Positives = 78/198 (39%), Gaps = 20/198 (10%)

Query: 121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQL-GNLSNLQYLDLSWNFLY 179
            LDL  N    +    F   +  LR L L+  +    +P  +   L NL+ L ++ N L 
Sbjct: 41  KLDLQSNKLSSLPSKAFH-RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

Query: 180 VENLWWLP-----GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL 234
                 LP      L  L +L L    L       RV ++L  L  L L   +L  LP  
Sbjct: 99  A-----LPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQSLPKG 151

Query: 235 AIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLK 292
                ++L  L L  NQ     VP   F  L +L  L L  N  +  +PEG   +L  LK
Sbjct: 152 VFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLK 208

Query: 293 HLLLDSNRFNSSIPNWLY 310
            L L  N ++ +    +Y
Sbjct: 209 MLQLQENPWDCTCNGIIY 226

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 49/233 (21%), Positives = 83/233 (35%), Gaps = 62/233 (26%)

Query: 391 NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLG 450
           +   LDL +N +      +   L+ L+ + L+ N             +L TL        
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-------------KLQTL-------- 76

Query: 451 SRFPSWL-HSQKHLNYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIP----- 503
              P+ +    K+L  L ++ + +  ++P  +F      +  L L  NQ+   +P     
Sbjct: 77  ---PAGIFKELKNLETLWVTDNKLQ-ALPIGVF-DQLVNLAELRLDRNQLK-SLPPRVFD 130

Query: 504 NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563
           +LT    L  LSLG N                     S+   +F        +L  L+ L
Sbjct: 131 SLTK---LTYLSLGYNELQ------------------SLPKGVFD-------KLTSLKEL 162

Query: 564 YLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 616
            L  N L+      +     L  L L NN+       +  SL  L+ L L++N
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQL-GNLSNLQYLDLS 174
           LK+L  L ++ N  Q +        + NL  L L   Q    +PP++  +L+ L YL L 
Sbjct: 84  LKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLG 141

Query: 175 WNFLYVENLWWLP-----GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
           +N      L  LP      L+ LK+L L    L +  +     + L  L  L+L   QL 
Sbjct: 142 YN-----ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLK 194

Query: 230 HLPPLAIANFSTLTTLDLLYNQFD 253
            +P  A  +   L  L L  N +D
Sbjct: 195 RVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 16/191 (8%)

Query: 239 FSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLL 296
            +    LDL  N+   S +P+  F  L +L  L L  N  Q  +P G+ + L +L+ L +
Sbjct: 36  PADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWV 92

Query: 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI 356
             N+  +       +   L  L +  N L+    R   SL  L  + L   +L Q + + 
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPK- 150

Query: 357 FDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413
             +F    S  L+ L L       V      KL +   L  L L NN +      +   L
Sbjct: 151 -GVFDKLTS--LKELRLYNNQLKRVPEGAFDKLTE---LKTLKLDNNQLKRVPEGAFDSL 204

Query: 414 STLQFIDLSYN 424
             L+ + L  N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 22/189 (11%)

Query: 528 ISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584
           I ++  +LD  +N   S+    FH        L KL+ LYL  N LQ      +   +NL
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFH-------RLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 585 MILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLS----GTIHSLKNCTALLTLDVGEN 639
             L +++NK    LPI +   L++L  L L +N L         SL   T L  L +G N
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL---TKLTYLSLGYN 143

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD-LAFLQIVDLADNNLSGEVPRCI 698
           E  +++P  + ++ + +  L L +N+    +P+G  D L  L+ + L +N L        
Sbjct: 144 EL-QSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 699 HNLRAMVTL 707
            +L  +  L
Sbjct: 202 DSLEKLKML 210

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.1 bits (195), Expect = 7e-16
 Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 13/210 (6%)

Query: 122 LDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLSWN-FLY 179
                +     +IP  +    N   L    T+   +I         +L+ +++S N  L 
Sbjct: 14  FLCQESKVT--EIPSDLPR--NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 180 VENLWWLPGLSFLKDLDLSYVN-LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIAN 238
           V        L  L ++ +   N L   +        LP+L  L +S   + HLP +   +
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 239 FSTLTTLDLLYNQFDNSFVPNWVFGL-IQLVFLDLRRNNFQGPIPEGLQNLTSLKHL-LL 296
                 LD+  N   ++   N   GL  + V L L +N  Q  I     N T L  L L 
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLS 185

Query: 297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
           D+N       +  +  +    L +S   + 
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 44/221 (19%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLS 174
              L  +++S ND   V       ++  L  + +     +  I P+   NL NLQYL +S
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 175 WNFLYVENLWWLPGLSFLKDLDLSYVNLS----------KASDWLRVTNTLPSLVKLRLS 224
                   +  LP +  +  L    +++            +   L         V L L+
Sbjct: 113 NT-----GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-----FESVILWLN 162

Query: 225 RCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPE 283
           +  +  +   A              N  +   +PN VF G    V LD+ R         
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 284 GLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNS 324
           GL+NL  L+     S      +P  L +   L    ++  S
Sbjct: 221 GLENLKKLRAR---STYNLKKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.9 bits (179), Expect = 8e-14
 Identities = 48/258 (18%), Positives = 91/258 (35%), Gaps = 45/258 (17%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP------FQLATL 442
            +N   L      +      +      L+ I++S N++  +    I         +L  +
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV----IEADVFSNLPKLHEI 84

Query: 443 GLRHC-HLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFN-QIHG 500
            +    +L    P    +  +L YL +S +GI   +P++    + Q  +LD+  N  IH 
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH- 142

Query: 501 QIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNN---SISGSIFHFICYRAHEL 557
                         ++  NSF G    +S   + L  + N    I  S F+         
Sbjct: 143 --------------TIERNSFVG----LSFESVILWLNKNGIQEIHNSAFN-------GT 177

Query: 558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 617
           +  +      N L+    D +      +ILD+S  +        L +L  L++      N
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YN 235

Query: 618 LSGTIHSLKNCTALLTLD 635
           L   + +L+   AL+   
Sbjct: 236 LK-KLPTLEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 44/275 (16%), Positives = 94/275 (34%), Gaps = 39/275 (14%)

Query: 212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFL 270
           ++   + ++LR    +L  +   A + F  L  +++  N      +   VF  L +L  +
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEI 84

Query: 271 DLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFN-RLESLGVSNN----S 324
            + + N    I     QNL +L++LL+ +      +P+     + +   L + +N    +
Sbjct: 85  RIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 325 LQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGH 381
           ++      ++       + L+   + QEI      F+G      E+ +        +   
Sbjct: 144 IERNSFVGLSF--ESVILWLNKNGI-QEIHN--SAFNGT--QLDELNLSDNNNLEELPND 196

Query: 382 LTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF---- 437
           + +          LD+S   I     + L +L  L+       +        +P      
Sbjct: 197 VFHGA---SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKK-------LPTLEKLV 246

Query: 438 QLATLGL---RHCHLGSRFPSWLHSQKHLNYLDLS 469
            L    L    HC     F +W      L+ +   
Sbjct: 247 ALMEASLTYPSHC---CAFANWRRQISELHPICNK 278

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 45/239 (18%), Positives = 81/239 (33%), Gaps = 28/239 (11%)

Query: 466 LDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFS 522
                S +T  IP ++          L     ++   I     +    LE + +  N   
Sbjct: 14  FLCQESKVT-EIPSDLP----RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL 67

Query: 523 GALPLIS----SNLIELDFSNN----SISGSIFHFICYRAHELKKLQFLYLRGNFLQGEL 574
             +          L E+          I+   F         L  LQ+L +    ++   
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-------NLPNLQYLLISNTGIKHLP 120

Query: 575 TDCWMNYQNLMILDLSNNKFTGNLPISL--GSLISLQSLHLRKNNLSGTIHSLKNCTALL 632
               ++    ++LD+ +N     +  +   G       L L KN +    +S  N T L 
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 633 TLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
            L++ +N  +E +P  +    S  V+L +   + HSL   GL +L  L+       NL 
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 35/256 (13%), Positives = 80/256 (31%), Gaps = 34/256 (13%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGENE 640
           N + L     K       +      L+ + + +N++   I +    N   L  + + +  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHN 700
            +  I     +    +  L++ +     L            ++D+ DN     + R    
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER---- 146

Query: 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS 760
                  NS  G + +   L           L ++ +  +   A        L  +    
Sbjct: 147 -------NSFVGLSFESVILW----------LNKNGIQEIHNSAFNG---TQLDELNLSD 186

Query: 761 KNNFSGKIPLEV-TNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDF-SLNQLSGEIPQ 818
            NN   ++P +V          ++S       +P     + +L+ +   S   L  ++P 
Sbjct: 187 NNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLK-KLP- 240

Query: 819 SMSSLTYLNHLNLSNN 834
           ++  L  L   +L+  
Sbjct: 241 TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 28/142 (19%), Positives = 37/142 (26%), Gaps = 11/142 (7%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPR--FICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQ 169
             +       LD+  N      I R  F+        L L+      +           +
Sbjct: 123 HKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181

Query: 170 YLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR-LSRCQL 228
                 N L         G S    LD+S   +            L +L KLR  S   L
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----YGLENLKKLRARSTYNL 236

Query: 229 HHLPPLAIANFSTLTTLDLLYN 250
             LP L       L    L Y 
Sbjct: 237 KKLPTL--EKLVALMEASLTYP 256

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.1 bits (195), Expect = 9e-16
 Identities = 44/168 (26%), Positives = 60/168 (35%), Gaps = 14/168 (8%)

Query: 166 SNLQYLDLSWNFL-YVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLS 224
           S    LDLS N L  +   W    L+ L  L LS+ +L+  S        +P+L  L LS
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EAFVPVPNLRYLDLS 96

Query: 225 RCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPE 283
              LH L     ++   L  L L  N      V    F  + QL  L L +N      P 
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQNQISR-FPV 153

Query: 284 G----LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327
                   L  L  L L SN+    +P       +L +   +   L  
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKL-KKLPL--TDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.8 bits (189), Expect = 5e-15
 Identities = 46/192 (23%), Positives = 70/192 (36%), Gaps = 36/192 (18%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLSWN 176
           + + LDLS+N+   ++       + NL  L LS+   +  I  +    + NL+YLDLS N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98

Query: 177 FLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI 236
            L+      L    F                       L +L  L L    +  +   A 
Sbjct: 99  HLHT-----LDEFLFSD---------------------LQALEVLLLYNNHIVVVDRNAF 132

Query: 237 ANFSTLTTLDLLYNQFDNSFVPNWVF----GLIQLVFLDLRRNNFQGPIPEGLQNLTSLK 292
            + + L  L L  NQ   S  P  +      L +L+ LDL  N  +      LQ L +  
Sbjct: 133 EDMAQLQKLYLSQNQI--SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 293 H--LLLDSNRFN 302
              L L +N   
Sbjct: 191 KNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 13/158 (8%)

Query: 195 LDLSYVNLSK-ASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD 253
           LDLS+ NLS+  ++W      L +L  L LS   L+ +   A      L  LDL  N   
Sbjct: 44  LDLSHNNLSRLRAEW--TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL- 100

Query: 254 NSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPN---- 307
              +  ++F  L  L  L L  N+    +     +++  L+ L L  N+  S  P     
Sbjct: 101 -HTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQI-SRFPVELIK 157

Query: 308 WLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS 345
              +  +L  L +S+N L+   +  +  L       L 
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 36/174 (20%)

Query: 464 NYLDLSYSGITGSIP-NIFWSSASQIYVLDLSFNQIHGQIPN--LTNAAQLEVLSLGSN- 519
           N L  S   +  ++P ++     S   +LDLS N +         T    L  L L  N 
Sbjct: 21  NILSCSKQQLP-NVPQSLP----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 520 -------SFSGALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNF 569
                  +F         NL  LD S+N   ++   +F        +L+ L+ L L  N 
Sbjct: 76  LNFISSEAFVPV-----PNLRYLDLSSNHLHTLDEFLFS-------DLQALEVLLLYNNH 123

Query: 570 LQGELTDCWMNYQNLMILDLSNNKFTGNLP----ISLGSLISLQSLHLRKNNLS 619
           +     + + +   L  L LS N+ +   P         L  L  L L  N L 
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 49/208 (23%), Positives = 74/208 (35%), Gaps = 37/208 (17%)

Query: 417 QFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSW-LHSQKHLNYLDLSYSGITG 475
             +  S  +L  +  + +P    A L L H +L      W      +L+ L LS++ +  
Sbjct: 21  NILSCSKQQLPNVPQS-LPS-YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN- 77

Query: 476 SIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIEL 535
            I +  +     +  LDLS N +H               +L    FS  L      L  L
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLH---------------TLDEFLFSD-LQ----ALEVL 117

Query: 536 DFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQ---GELTDCWMNYQNLMILDL 589
              NN    +  + F         + +LQ LYL  N +     EL         LM+LDL
Sbjct: 118 LLYNNHIVVVDRNAFED-------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170

Query: 590 SNNKFTGNLPISLGSLISLQSLHLRKNN 617
           S+NK        L  L +     L  +N
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 26/134 (19%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPP-QLGNLSNLQYLDL 173
            + +L YLDLS N    +    F   +  L  L L     + ++      +++ LQ L L
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFS-DLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYL 143

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
           S N      +   P                      +  N LP L+ L LS  +L  LP 
Sbjct: 144 SQN-----QISRFPVELI------------------KDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 234 LAIANFSTLTTLDL 247
             +          L
Sbjct: 181 TDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 583 NLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLSGTIHS--LKNCTALLTLDVGEN 639
              +LDLS+N  +      +   L +L SL L  N+L+  I S        L  LD+  N
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
             +  +  ++      + VL+L +N    +      D+A LQ + L+ N +S
Sbjct: 99  H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 42/196 (21%), Positives = 61/196 (31%), Gaps = 40/196 (20%)

Query: 281 IPEGLQNLTSLKHLLLDSNRFNSSIPNW-LYRFNRLESLGVSNNSLQGRVIRSMA--SLC 337
           +P+ L   +    L L  N  +     W   R   L SL +S+N L    I S A   + 
Sbjct: 33  VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVP 88

Query: 338 NLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL 397
           NLR + LS   L      +F                        L         L  L L
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFS----------------------DLQ-------ALEVLLL 119

Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYNEL----NGMNDNWIPPFQLATLGLRHCHLGSRF 453
            NN IV     +   ++ LQ + LS N++      +  +     +L  L L    L    
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 454 PSWLHSQKHLNYLDLS 469
            + L          L 
Sbjct: 180 LTDLQKLPAWVKNGLY 195

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 21/196 (10%)

Query: 143 NLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDLSWNFLYVENLWWLP-----GLSFLKDLD 196
           + + L L  T     IP     NL N+  + +S +      L  L       LS +  ++
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID----VTLQQLESHSFYNLSKVTHIE 86

Query: 197 LSYVN-LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL-AIANFSTLTTLDLLYNQFDN 254
           +     L+           LP L  L +    L   P L  + +      L++  N +  
Sbjct: 87  IRNTRNLTYIDP--DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY-M 143

Query: 255 SFVPNWVF-GLI-QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYR- 311
           + +P   F GL  + + L L  N F   +     N T L  + L+ N++ + I    +  
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 312 -FNRLESLGVSNNSLQ 326
            ++    L VS  S+ 
Sbjct: 203 VYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 35/214 (16%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFI-CSMGNLRYLNLSYTQFVGMIPPQ-LGNLSNLQYLDL 173
           L ++S + +S +     Q+      ++  + ++ +  T+ +  I P  L  L  L++L +
Sbjct: 54  LPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 174 SWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR-CQLHHLP 232
               L +      P L+ +                     +      L ++    +  +P
Sbjct: 113 FNTGLKM-----FPDLTKV--------------------YSTDIFFILEITDNPYMTSIP 147

Query: 233 PLAIANFSTLT-TLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG-LQNLTS 290
             A       T TL L  N F  + V  + F   +L  + L +N +   I +     + S
Sbjct: 148 VNAFQGLCNETLTLKLYNNGF--TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 291 -LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNN 323
               L +      +++P+       L+ L   N 
Sbjct: 206 GPSLLDVSQTSV-TALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 24/224 (10%)

Query: 210 RVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLV 268
           R+ +  PS   L+L    L  +P  A +N   ++ + +  +      + +  F  L ++ 
Sbjct: 25  RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVT 83

Query: 269 FLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPN--WLYRFNRLESLGVSNN-- 323
            +++R       I    L+ L  LK L + +       P+   +Y  +    L +++N  
Sbjct: 84  HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPY 142

Query: 324 --SLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG----SS 377
             S+     + + +     ++ L        +      F+G   + L+ + L      + 
Sbjct: 143 MTSIPVNAFQGLCNE--TLTLKLYNNGF-TSVQG--YAFNG---TKLDAVYLNKNKYLTV 194

Query: 378 VSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDL 421
           +       +        LD+S  S+       L HL  L   + 
Sbjct: 195 IDKDAFGGVYS--GPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 28/184 (15%), Positives = 63/184 (34%), Gaps = 22/184 (11%)

Query: 524 ALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQGEL-TDCWM 579
            +P +  +   L        +I    F         L  +  +Y+  +    +L +  + 
Sbjct: 25  RIPSLPPSTQTLKLIETHLRTIPSHAF-------SNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 580 NYQNLMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLS--GTIHSLKNCTALLTLDV 636
           N   +  +++ N +    +    L  L  L+ L +    L     +  + +      L++
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 637 GENEFVENIPTWIGERFSRM----VVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG 692
            +N ++ +IP      F  +    + L L +N F S +     +   L  V L  N    
Sbjct: 138 TDNPYMTSIPVNA---FQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLT 193

Query: 693 EVPR 696
            + +
Sbjct: 194 VIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 41/236 (17%)

Query: 391 NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF------QLATLGL 444
           +   L L    +      +  +L  +  I +S +         +         ++  + +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ----LESHSFYNLSKVTHIEI 87

Query: 445 RH-CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPN-IFWSSASQIYVLDLSFNQIHGQI 502
           R+  +L    P  L     L +L +  +G+    P+     S    ++L+++ N     I
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQF 562
           P               N+F G    + +  + L   NN  +      +   A    KL  
Sbjct: 147 P--------------VNAFQG----LCNETLTLKLYNNGFT-----SVQGYAFNGTKLDA 183

Query: 563 LYLRGN-FLQGELTDCWMN-YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 616
           +YL  N +L     D +   Y    +LD+S    T    +    L  L+ L  R  
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA---LPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 34/163 (20%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQ-LGNLSN-LQYLD 172
           +L  L +L +     +       + S      L ++   ++  IP      L N    L 
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 173 LSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ-LHHL 231
           L  N         + G +F                          L  + L++ + L  +
Sbjct: 163 LYNN-----GFTSVQGYAF----------------------NGTKLDAVYLNKNKYLTVI 195

Query: 232 PPLAIAN-FSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDL 272
              A    +S  + LD+       + +P+     L +L+  + 
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSV--TALPSKGLEHLKELIARNT 236

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 14/188 (7%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
            K      L  +    +        M +L Y+ L+      +    +    N++ L ++ 
Sbjct: 22  FKAYLNGLLGQSSTANITE----AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
              +  N   + GLS L+ L +   +++  SD +   + L SL  L +S           
Sbjct: 76  I--HATNYNPISGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 236 IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295
           I     + ++DL YN      +P  +  L +L  L+++ +        G+++   L  L 
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLY 187

Query: 296 LDSNRFNS 303
             S     
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 163 GNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR 222
             +++L Y+ L+     V +L  +     +KDL ++ ++ +  +      + L +L +LR
Sbjct: 41  AQMNSLTYITLANI--NVTDLTGIEYAHNIKDLTINNIHATNYN----PISGLSNLERLR 94

Query: 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIP 282
           +    +       ++  ++LT LD+ ++  D+S +   +  L ++  +DL  N     I 
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDI- 152

Query: 283 EGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327
             L+ L  LK L +  +  +      +  F +L  L   + ++ G
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 7/152 (4%)

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFH 548
            L+    Q             L  ++L + + +    +    N+ +L  +N   + +   
Sbjct: 25  YLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYNP 83

Query: 549 FICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 608
                   L  L+ L + G  +  +         +L +LD+S++    ++   + +L  +
Sbjct: 84  I-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 609 QSLHLRKNNLSGTIHSLKNCTALLTLDVGENE 640
            S+ L  N     I  LK    L +L++  + 
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 32/191 (16%), Positives = 57/191 (29%), Gaps = 43/191 (22%)

Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           + SL  + L+   +  L  +       +  L +      N    N + GL  L  L +  
Sbjct: 43  MNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNY---NPISGLSNLERLRIMG 97

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
            +        L  LTSL  L +  +  + SI   +    ++ S+ +S N      I  + 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA----ITDIM 153

Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGHLTYKLGQFKN 391
            L  L                            L+ L ++        G     +  F  
Sbjct: 154 PLKTLPE--------------------------LKSLNIQFDGVHDYRG-----IEDFPK 182

Query: 392 LYYLDLSNNSI 402
           L  L   + +I
Sbjct: 183 LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG 814
           + +  +  + +   P+    L  L+   +     T     ++  + SL  +D S +    
Sbjct: 69  KDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 815 EIPQSMSSLTYLNHLNLSNNNLTGKIP---SSTQLQSFDASS 853
            I   +++L  +N ++LS N     I    +  +L+S +   
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG 814
             +     + +      ++ L +L   ++S++     I   I  +  + SID S N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 815 EIPQSMSSLTYLNHLNLSNNNLTGKIPSS--TQLQSFDASS 853
           +I   + +L  L  LN+  + +          +L    A S
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 39/212 (18%)

Query: 287 NLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC 346
              +  + LL  +   +     +   N L  + ++N ++    +  +    N++ + ++ 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINV--TDLTGIEYAHNIKDLTINN 75

Query: 347 VKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPI 406
           +  +   + I  +      S LE L + G  V+      L    +L  LD+S+++    I
Sbjct: 76  IHAT-NYNPISGL------SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 407 PFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYL 466
              +  L  +  IDLSYN    + D  I P  L TL                    L  L
Sbjct: 129 LTKINTLPKVNSIDLSYN--GAITD--IMP--LKTL------------------PELKSL 164

Query: 467 DLSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498
           ++ + G+      I      ++  L      I
Sbjct: 165 NIQFDGVH-DYRGI--EDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
           P+L  L  L+ LD+S++      +   I ++  +  ++LSY   +  I P L  L  L+ 
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMP-LKTLPELKS 163

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLS 203
           L++ ++   V +   +     L  L      + 
Sbjct: 164 LNIQFD--GVHDYRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
            ++  +   L  +       I+   + SL  + L   N++  +  ++    +  L +   
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNI 76

Query: 640 EF--VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRC 697
                  I        S +  L +      S     L  L  L ++D++ +     +   
Sbjct: 77  HATNYNPI-----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 698 IHNLRAMVTLN 708
           I+ L  + +++
Sbjct: 132 INTLPKVNSID 142

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 40/239 (16%)

Query: 408 FSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLD 467
           F    L+     +L    +  +                                 +   +
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS-------------------------QKELSGVQNFN 47

Query: 468 LSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPL 527
              S I  S+  +     + +  L LS NQI   +  L +  +LE LS+  N       +
Sbjct: 48  GDNSNIQ-SLAGM--QFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNLNGI 103

Query: 528 ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMIL 587
            S+ L  L   NN +              LK L+ L +R N L+  +         L +L
Sbjct: 104 PSACLSRLFLDNNELR-DTDSL-----IHLKNLEILSIRNNKLK-SIVML-GFLSKLEVL 155

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLS-GTIHSLKNCTALLTLDVGENEFVENI 645
           DL  N+ T    ++   L  +  + L         +          T+   +  ++   
Sbjct: 156 DLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 19/213 (8%)

Query: 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLD 172
              L +    +L       +        +  ++  N   +    +    +   +NL+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELH 69

Query: 173 LSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP 232
           LS N   + +L  L  L+ L++L ++   L   +           L +L L   +L    
Sbjct: 70  LSHN--QISDLSPLKDLTKLEELSVNRNRLKNLNG-----IPSACLSRLFLDNNELRDTD 122

Query: 233 PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK 292
            L   +   L  L +  N+  +  +   +  L +L  LDL  N        GL  L  + 
Sbjct: 123 SL--IHLKNLEILSIRNNKLKS--IVM-LGFLSKLEVLDLHGNEITN--TGGLTRLKKVN 175

Query: 293 HLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL 325
            + L   +  +    +        ++   +   
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 40/242 (16%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            S  +L  +   +   ++ Q +     +    NL+ L+LS+ Q   + P  L +L+ L+ 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L ++ N   ++NL  +P    L  L L    L            L +L  L +   +L  
Sbjct: 90  LSVNRN--RLKNLNGIPSAC-LSRLFLDNNELRD----TDSLIHLKNLEILSIRNNKLKS 142

Query: 231 LPPLAIANFSTLTTLDLLYNQF-DNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
           +  L     S L  LDL  N+  +   +      L ++ ++DL          +    L 
Sbjct: 143 IVML--GFLSKLEVLDLHGNEITNTGGLTR----LKKVNWIDLTGQKCVNEPVKYQPELY 196

Query: 290 SLKHLLLDSNR---------------------FNSSIPNWLYRFNRLESLGVSNNSLQGR 328
               +     R                              Y+F+   ++G +     G 
Sbjct: 197 ITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGT 256

Query: 329 VI 330
           V 
Sbjct: 257 VT 258

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 18/184 (9%)

Query: 162 LGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKL 221
              L+N    +L      V +L     LS +++ +    N+   +          +L +L
Sbjct: 15  DPGLANAVKQNLGKQS--VTDLVSQKELSGVQNFNGDNSNIQSLAGM----QFFTNLKEL 68

Query: 222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPI 281
            LS  Q+  L PL   + + L  L +  N+  N  +         L  L L  N  +   
Sbjct: 69  HLSHNQISDLSPL--KDLTKLEELSVNRNRLKN--LNG--IPSACLSRLFLDNNELRD-- 120

Query: 282 PEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
            + L +L +L+ L + +N+   SI   L   ++LE L +  N +       +  L  +  
Sbjct: 121 TDSLIHLKNLEILSIRNNKL-KSIVM-LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNW 176

Query: 342 VMLS 345
           + L+
Sbjct: 177 IDLT 180

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 39/254 (15%), Positives = 71/254 (27%), Gaps = 67/254 (26%)

Query: 283 EGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
                L +     L        +       + +++    N+++  + +  M    NL+ +
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68

Query: 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI 402
            LS      +IS++         S L+                      L  L ++ N +
Sbjct: 69  HLS----HNQISDL---------SPLK------------------DLTKLEELSVNRNRL 97

Query: 403 VGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKH 462
                     LS L    L  NEL                              L   K+
Sbjct: 98  KNLNGIPSACLSRL---FLDNNELRDT-------------------------DSLIHLKN 129

Query: 463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 522
           L  L +  + +  SI  +     S++ VLDL  N+I      LT   ++  + L      
Sbjct: 130 LEILSIRNNKLK-SIVML--GFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCV 185

Query: 523 GALPLISSNLIELD 536
                    L   +
Sbjct: 186 NEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 557 LKKLQFLYLRGNFLQGELTD--CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 614
           L       L        +TD         +   +  N+    +L   +    +L+ LHL 
Sbjct: 18  LANAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLS 71

Query: 615 KNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGL 674
            N +S  +  LK+ T L  L V  N     +    G   + +  L L +N+        L
Sbjct: 72  HNQIS-DLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDT--DSL 124

Query: 675 CDLAFLQIVDLADNNLS 691
             L  L+I+ + +N L 
Sbjct: 125 IHLKNLEILSIRNNKLK 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQF 252
            +L L+    +           LP L K+  S  ++  +   A    S +  + L  N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKK-LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93

Query: 253 DNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLY 310
           +N  V + +F GL  L  L LR N     +       L+S++ L L  N+  +++     
Sbjct: 94  EN--VQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQI-TTVAPGA- 148

Query: 311 RFNRLESL 318
            F+ L SL
Sbjct: 149 -FDTLHSL 155

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 8/140 (5%)

Query: 166 SNLQYLDLSWNFLYV-ENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLS 224
                L L+ N   V E       L  L+ ++ S   ++   +          + ++ L+
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--GAFEGASGVNEILLT 89

Query: 225 RCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPE 283
             +L ++         +L TL L  N+   + V N  F GL  +  L L  N     +  
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

Query: 284 G-LQNLTSLKHLLLDSNRFN 302
           G    L SL  L L +N FN
Sbjct: 147 GAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 122 LDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE 181
           L L+ N+F  ++       +  LR +N S  +   +        S +  + L+ N     
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN----- 91

Query: 182 NLWWLP-----GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI 236
            L  +      GL  LK L L    ++   +       L S+  L L   Q+  + P A 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGN--DSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 237 ANFSTLTTLDLLYNQFD 253
               +L+TL+LL N F+
Sbjct: 150 DTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 30/154 (19%)

Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGAL 525
           L L+ +  T       +    Q+  ++ S N+I                 +   +F GA 
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT---------------DIEEGAFEGA- 80

Query: 526 PLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ 582
               S + E+  ++N   ++   +F         L+ L+ L LR N +     D ++   
Sbjct: 81  ----SGVNEILLTSNRLENVQHKMF-------KGLESLKTLMLRSNRITCVGNDSFIGLS 129

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 616
           ++ +L L +N+ T   P +  +L SL +L+L  N
Sbjct: 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 587 LDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLS----GTIHSLKNCTALLTLDVGENEF 641
           L L+NN+FT      +   L  L+ ++   N ++    G          +  + +  N  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG---VNEILLTSNR- 92

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNL 701
           +EN+   + +    +  L+LRSN+   +       L+ ++++ L DN ++   P     L
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 702 RAMVTLN 708
            ++ TLN
Sbjct: 153 HSLSTLN 159

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 50/301 (16%), Positives = 89/301 (29%), Gaps = 58/301 (19%)

Query: 386 LGQFKNLYYLDLSNNSI----VGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLAT 441
           L +  ++  + LS N+I       +  ++     L+  + S      + D      +L  
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 442 LGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS-IPNI--FWSSASQIYVLDLSFNQI 498
             L  C               L+ + LS +    +    +  F S  + +  L L  N +
Sbjct: 88  QALLKC-------------PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

Query: 499 --------------HGQIPNLTNAAQLEVLSLGSNSFS--GALPL-----ISSNLIELDF 537
                                 NA  L  +  G N                   L  +  
Sbjct: 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 538 SNNSISGS-IFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNN 592
             N I    I H +       ++L+ L L+ N         L     ++ NL  L L++ 
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 593 KFT--GNLPIS----LGSLISLQSLHLRKNNLSGT-----IHSLK-NCTALLTLDVGENE 640
             +  G   +         I LQ+L L+ N +           +      LL L++  N 
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 641 F 641
           F
Sbjct: 315 F 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 50/326 (15%), Positives = 97/326 (29%), Gaps = 58/326 (17%)

Query: 119 LSYLDLSYNDF--QGVQ-IPRFICSMGNLRYLNLSYTQF--VGM--IPPQLGNLSNLQYL 171
           +    L  +    +  + +   +    +++ + LS           +   + +  +L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL 231
           + S  F           L  L                L+     P L  +RLS       
Sbjct: 66  EFSDIFTGRVKDEIPEALRLL----------------LQALLKCPKLHTVRLSDNAFGPT 109

Query: 232 PPLAIANF----STLTTLDLLYNQF------------DNSFVPNWVFGLIQLVFLDLRRN 275
               + +F    + L  L L  N                  V         L  +   RN
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 276 NFQGP----IPEGLQNLTSLKHLLLDSNRFNSS-----IPNWLYRFNRLESLGVSNNSLQ 326
             +        +  Q+   L  + +  N          +   L     L+ L + +N+  
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 327 GRVIRSMA----SLCNLRSVMLSCVKLSQE-ISEIFDIFSGCVSSGLEILVLRGSSVSGH 381
                ++A    S  NLR + L+   LS    + + D FS   + GL+ L L+ + +   
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

Query: 382 LTYKLGQ-----FKNLYYLDLSNNSI 402
               L         +L +L+L+ N  
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 6e-10
 Identities = 39/336 (11%), Positives = 88/336 (26%), Gaps = 79/336 (23%)

Query: 217 SLVKLRLSRCQL--HHLPPLA--IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL 272
           S+    L    +       +   +    ++  + L  N                L     
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTE-------AARWLS---- 53

Query: 273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFN----------SSIPNWLYRFNRLESLGVSN 322
                     E + +   L+                      +   L +  +L ++ +S+
Sbjct: 54  ----------ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103

Query: 323 NSLQGRVIRSMASL----CNLRSVMLS--------CVKLSQEISEIFDIFSGCVSSGLEI 370
           N+        +         L  + L           K+++ + E+        +  L  
Sbjct: 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163

Query: 371 LVLR----GSSVSGHLTYKLGQFKNLYYLDLSNNSI-----VGPIPFSLGHLSTLQFIDL 421
           ++       +             + L+ + +  N I        +   L +   L+ +DL
Sbjct: 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 422 SYNEL---------NGMNDNWIPPFQLATLGLRHCHLGSRFPSWL------HSQKHLNYL 466
             N             +         L  LGL  C L +R  + +           L  L
Sbjct: 224 QDNTFTHLGSSALAIALKSW----PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 467 DLSYSGITG----SIPNIFWSSASQIYVLDLSFNQI 498
            L Y+ I      ++  +       +  L+L+ N+ 
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 42/234 (17%)

Query: 439 LATLGLRHCHLGSR----FPSWLHSQKHLNYLDLSYSGITG----SIPNIFWSSASQIYV 490
           +    L+   + +       + L     +  + LS + I       +     +S   + +
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEI 64

Query: 491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFI 550
            + S     G++ +                   AL L    L  +  S+N+   +    +
Sbjct: 65  AEFSDIFT-GRVKDEIPE--------ALRLLLQAL-LKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 551 CYRAHELKKLQFLYLRGNFLQGE--------LTDCWMNY-----QNLMILDLSNNKFTGN 597
                +   L+ LYL  N L  +        L +  +N        L  +    N+    
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 598 ----LPISLGSLISLQSLHLRKNNLS--GTIH----SLKNCTALLTLDVGENEF 641
                  +  S   L ++ + +N +   G  H     L  C  L  LD+ +N F
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 46/279 (16%), Positives = 77/279 (27%), Gaps = 44/279 (15%)

Query: 60  IGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHL 119
           IG E     +  +       +      + FT     +     R +L      +LL    L
Sbjct: 44  IGTEAARWLSENIASKKD--LEIAEFSDIFTGRVKDEIPEALRLLL-----QALLKCPKL 96

Query: 120 SYLDLSYNDF--QGVQ-IPRFICSMGNLRYLNLSYTQF-------------VGMIPPQLG 163
             + LS N F     + +  F+     L +L L                     +  +  
Sbjct: 97  HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK 156

Query: 164 NLSNLQYLDLSWNFLYVENLWW----LPGLSFLKDLDLSYVNLSKASDWLRVTNTL---P 216
           N   L+ +    N L   ++            L  + +    +        +   L    
Sbjct: 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216

Query: 217 SLVKLRLSRCQLHHLPPLAIA----NFSTLTTLDLLYNQFDNSFVPNWVFGL-----IQL 267
            L  L L      HL   A+A    ++  L  L L             V        I L
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 268 VFLDLRRNNFQGP----IPEGLQ-NLTSLKHLLLDSNRF 301
             L L+ N  +      +   +   +  L  L L+ NRF
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 48/377 (12%), Positives = 103/377 (27%), Gaps = 116/377 (30%)

Query: 511 LEVLSLGSNSFS--GALPLIS-----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563
           +E  SL  ++ +      + +      ++ E+  S N+I      ++       K L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 564 YLRGNFLQ----------GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI----SLQ 609
                F              L    +    L  + LS+N F       L   +     L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 610 SLHLRKNNLS--------------GTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSR 655
            L+L  N L                     KN   L ++  G N         +     +
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--------LENGSMK 177

Query: 656 MVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAI 715
                 +S++              L  V +  N +  E                      
Sbjct: 178 EWAKTFQSHRL-------------LHTVKMVQNGIRPE---------------------- 202

Query: 716 QYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK----IPLE 771
                           LL + L   +           L +++D   N F+      + + 
Sbjct: 203 ------------GIEHLLLEGLAYCQ----------EL-KVLDLQDNTFTHLGSSALAIA 239

Query: 772 VTNLKALQSFNLSNNFFTGRIPESIGAM------RSLESIDFSLNQLSGE----IPQSM- 820
           + +   L+   L++   + R   ++           L+++    N++  +    +   + 
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 821 SSLTYLNHLNLSNNNLT 837
             +  L  L L+ N  +
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 23/160 (14%)

Query: 117 KHLSYLDLSYNDFQ--GVQ-IPRFICSMGNLRYLNLSYTQF-----VGMIPPQLGNLSNL 168
             L  +    N  +   ++   +   S   L  + +            ++   L     L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 169 QYLDLSWNFLYVENLWW----LPGLSFLKDLDLSYVNLSKA-----SDWLRVTNTLPSLV 219
           + LDL  N             L     L++L L+   LS        D          L 
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK-LENIGLQ 277

Query: 220 KLRLSRCQLHHLPPLAIA-----NFSTLTTLDLLYNQFDN 254
            LRL   ++       +          L  L+L  N+F  
Sbjct: 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 44/325 (13%), Positives = 97/325 (29%), Gaps = 88/325 (27%)

Query: 532 LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMIL 587
           +       ++I+      +     E   ++ + L GN +  E    L++   + ++L I 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPT 647
           + S+  FTG   +      +L+ L          + +L  C  L T+ + +N        
Sbjct: 66  EFSDI-FTGR--VKDEIPEALRLL----------LQALLKCPKLHTVRLSDNA------- 105

Query: 648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707
             G      ++  L  +               L+ + L +N L  +              
Sbjct: 106 -FGPTAQEPLIDFLSKHTP-------------LEHLYLHNNGLGPQ-------------- 137

Query: 708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK 767
              AG  I                    A  + +    +       +R I   +N     
Sbjct: 138 ---AGAKI--------------------ARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 768 ----IPLEVTNLKALQSFNLSNNFFTGR-----IPESIGAMRSLESIDFSLNQLSGE--- 815
                     + + L +  +  N          + E +   + L+ +D   N  +     
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234

Query: 816 -IPQSMSSLTYLNHLNLSNNNLTGK 839
            +  ++ S   L  L L++  L+ +
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 34/267 (12%), Positives = 73/267 (27%), Gaps = 78/267 (29%)

Query: 607 SLQSLHLRKNNLSGT-----IHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLIL 661
           S++   L+ + ++          L    ++  + +  N         IG   +R +   +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN--------TIGTEAARWLSENI 56

Query: 662 RSNKFHSLLPKGLCDLAFLQIVDLADN---NLSGEVPRCIHNLRAMVTLNSH------AG 712
            S K              L+I + +D     +  E+P  +  L   +           + 
Sbjct: 57  ASKK-------------DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103

Query: 713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFS------- 765
            A            P+    L D L                +  +    N          
Sbjct: 104 NAFG----------PTAQEPLIDFLSKHTP-----------LEHLYLHNNGLGPQAGAKI 142

Query: 766 ------GKIPLEVTNLKALQSFNLSNNFFTGR----IPESIGAMRSLESIDFSLNQLSGE 815
                   +  +  N   L+S     N           ++  + R L ++    N +  E
Sbjct: 143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202

Query: 816 -----IPQSMSSLTYLNHLNLSNNNLT 837
                + + ++    L  L+L +N  T
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFT 229

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 48/171 (28%), Positives = 65/171 (38%), Gaps = 17/171 (9%)

Query: 147 LNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP-----GLSFLKDLDLSYVN 201
           L+L  T    +       L+ L +L+L +N L       L       L+ L  L L+   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-----LSAGVFDDLTELGTLGLANNQ 94

Query: 202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV 261
           L+       V + L  L KL L   QL  LP       + L  L L  NQ     +P   
Sbjct: 95  LASLPL--GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL--QSIPAGA 150

Query: 262 F-GLIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLY 310
           F  L  L  L L  N  Q  +P G    L  L+ + L  N+F+ S    LY
Sbjct: 151 FDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCSRCEILY 200

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 50/152 (32%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 169 QYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQL 228
           + LDL    L   +     GL+ L  L+L Y  L   S    V + L  L  L L+  QL
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--GVFDDLTELGTLGLANNQL 95

Query: 229 HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGL-Q 286
             LP     + + L  L L  NQ     +P+ VF  L +L  L L  N  Q  IP G   
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFD 152

Query: 287 NLTSLKHLLLDSNRFNSSIPNWLYRFNRLESL 318
            LT+L+ L L +N+   S+P+    F+RL  L
Sbjct: 153 KLTNLQTLSLSTNQL-QSVPHGA--FDRLGKL 181

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 35/168 (20%)

Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI----HGQIPNLTNAAQLEVLSLGSN-- 519
           LDL  +G+       F    +++  L+L +NQ+     G   +LT    L  L L +N  
Sbjct: 40  LDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTE---LGTLGLANNQL 95

Query: 520 -SFSGALPLISSNLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQG--- 572
            S    +    + L +L    N   S+   +F         L KL+ L L  N LQ    
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD-------RLTKLKELRLNTNQLQSIPA 148

Query: 573 ----ELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 616
               +LT       NL  L LS N+       +   L  LQ++ L  N
Sbjct: 149 GAFDKLT-------NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)

Query: 561 QFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNL- 618
           + L L+   L       +     L  L+L  N+    L   +   L  L +L L  N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 619 ---SGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLC 675
               G    L   T L  L +G N+ ++++P+ + +R +++  L L +N+  S +P G  
Sbjct: 97  SLPLGVFDHL---TQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAF 151

Query: 676 D-LAFLQIVDLADNNLSGEVPR 696
           D L  LQ + L+ N L   VP 
Sbjct: 152 DKLTNLQTLSLSTNQLQS-VPH 172

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 15/185 (8%)

Query: 145 RYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK 204
              NL               L+++  +  + + +  +++  +  L  ++ L L    L  
Sbjct: 22  IKANLKKKSVTDA--VTQNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHD 77

Query: 205 ASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-G 263
               +     L +L  L L+  QL  LP       + L  L L+ NQ     +P+ VF  
Sbjct: 78  ----ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDK 131

Query: 264 LIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLY-RFNRLESLGVS 321
           L  L +L+L  N  Q  +P+G+   LT+L  L L  N+   S+P  ++ +  +L+ L + 
Sbjct: 132 LTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLY 189

Query: 322 NNSLQ 326
            N L+
Sbjct: 190 QNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 63/210 (30%), Positives = 93/210 (44%), Gaps = 28/210 (13%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLG---NLSN 167
            +  +L  +  +  + +D + VQ    I  + N+RYL L   +        +     L+N
Sbjct: 35  VTQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLH-----DISALKELTN 86

Query: 168 LQYLDLSWNFLYVENLWWLP-----GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR 222
           L YL L+ N      L  LP      L+ LK+L L    L    D   V + L +L  L 
Sbjct: 87  LTYLILTGN-----QLQSLPNGVFDKLTNLKELVLVENQLQSLPD--GVFDKLTNLTYLN 139

Query: 223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQGPI 281
           L+  QL  LP       + LT LDL YNQ     +P  VF  L QL  L L +N  +  +
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQL--QSLPEGVFDKLTQLKDLRLYQNQLKS-V 196

Query: 282 PEG-LQNLTSLKHLLLDSNRFNSSIPNWLY 310
           P+G    LTSL+++ L  N ++ + P   Y
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 226

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 33/167 (19%)

Query: 465 YLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGA 524
             +L    +T         ++    + + S  +    I  L N   +  L+LG N     
Sbjct: 23  KANLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQYLPN---VRYLALGGNKLH-D 77

Query: 525 LPLISS--NLIELDFSNN---SISGSIFHFICYRAHELKKLQFLYLRGNFLQ-------G 572
           +  +    NL  L  + N   S+   +F        +L  L+ L L  N LQ        
Sbjct: 78  ISALKELTNLTYLILTGNQLQSLPNGVFD-------KLTNLKELVLVENQLQSLPDGVFD 130

Query: 573 ELTDCWMNYQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNL 618
           +LT       NL  L+L++N+   +LP  +   L +L  L L  N L
Sbjct: 131 KLT-------NLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 30/158 (18%), Positives = 47/158 (29%), Gaps = 29/158 (18%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
            +  + L       + P        L+ +DLS N +       L   +F           
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-----LAPDAFQG--------- 78

Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
                       L SL  L L   ++  LP        +L  L L  N+   + +    F
Sbjct: 79  ------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI--NCLRVDAF 124

Query: 263 -GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN 299
             L  L  L L  N  Q         L +++ + L  N
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 13/137 (9%)

Query: 122 LDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE 181
           + L  N  + +    F      LR ++LS  Q   + P     L +L  L L  N     
Sbjct: 37  IRLEQNTIKVIPPGAFS-PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN----- 90

Query: 182 NLWWLP-----GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI 236
            +  LP     GL  L+ L L+   ++           L +L  L L   +L  +     
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRV--DAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 237 ANFSTLTTLDLLYNQFD 253
           +    + T+ L  N F 
Sbjct: 149 SPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 22/138 (15%)

Query: 490 VLDLSFNQIHGQIPN--LTNAAQLEVLSLGSNSFSGALP------LISSNLIELDFSNN- 540
            + L  N I   IP    +   +L  + L +N  S  L       L   +L  L    N 
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGL--RSLNSLVLYGNK 91

Query: 541 --SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNL 598
              +  S+F         L  LQ L L  N +     D + +  NL +L L +NK     
Sbjct: 92  ITELPKSLFE-------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 599 PISLGSLISLQSLHLRKN 616
             +   L ++Q++HL +N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS----GTIHSLKNCTALLTLDVGENEFV 642
           + L  N      P +      L+ + L  N +S         L++   L +L +  N+ +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS---LNSLVLYGNK-I 92

Query: 643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR 702
             +P  + E    + +L+L +NK + L      DL  L ++ L DN L          LR
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 703 AMVTL 707
           A+ T+
Sbjct: 153 AIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP--F----QLATLGLRHCH 448
           + L  N+I    P +      L+ IDLS N+++      + P  F     L +L L    
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-----LAPDAFQGLRSLNSLVLYGNK 91

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN--LT 506
           +     S       L  L L+ + I   +    +     + +L L  N++   I     +
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFS 149

Query: 507 NAAQLEVLSLGSNSF 521
               ++ + L  N F
Sbjct: 150 PLRAIQTMHLAQNPF 164

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 51/290 (17%), Positives = 102/290 (35%), Gaps = 49/290 (16%)

Query: 390 KNLYYLDLSNNSI----VGPIPFSLGHL-STLQFIDLSYNELNGMNDNWI------PPFQ 438
            N+  L+LS N +       +  +L  +  T+  +DL +N+ +  + +         P  
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 439 LATLGLRHCHLGSRFPSWL-----HSQKHLNYLDLSYSGIT----GSIPNIFWSSASQIY 489
           + +L LR   LG +    L         ++N L+L  + +       +     S  + + 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHF 549
            LDLS N +  +                    +     I ++++ L+   N + G     
Sbjct: 200 SLDLSANLLGLK---------------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244

Query: 550 ICYRAHELKKLQFLYLRGNFLQG-------ELTDCWMNYQNLMILDLSNNKFTGNLPISL 602
           +      LK LQ +YL  + ++         L   + N Q ++++D +  +   +  I +
Sbjct: 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304

Query: 603 GSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGER 652
            +LI   S      +L        N   +       N    NIP  + E 
Sbjct: 305 SNLIRELSGKADVPSLL-------NQCLIFAQKHQTNIEDLNIPDELRES 347

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 57/356 (16%), Positives = 110/356 (30%), Gaps = 69/356 (19%)

Query: 162 LGNLSNLQYLDLSWNFLYVENLWWL-PGL----SFLKDLDLSYVNLSKA-----SDWLRV 211
                 +  LDLS N LY  +   L        + +  L+LS  +L           L  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 212 TNTLPSLVKLRLSRCQLHHLPPLAIANF-----STLTTLDLLYNQFDNSFVPNWVFGLI- 265
                ++  L LS   L +     +         T+T LDL +N F +     +      
Sbjct: 78  IPA--NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 266 ---QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSN 322
               +  L+LR N+      +    L     +L                   + SL +  
Sbjct: 136 LPASITSLNLRGNDLG---IKSSDELIQ---ILAAIPA-------------NVNSLNLRG 176

Query: 323 NSLQGRVIRSMASL-----CNLRSVMLSCVKLSQE-ISEIFDIFSGCVSSGLEILVLRGS 376
           N+L  +    +A        ++ S+ LS   L  +  +E+  IFS    + +  L L  +
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI-PNHVVSLNLCLN 235

Query: 377 SVSG----HLTYKLGQFKNLYYLDLSNNSI-------VGPIPFSLGHLSTLQFIDLSYNE 425
            + G    +L       K+L  + L  + +          +  +  ++  +  +D +  E
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 426 LNGMNDNWI------PPFQLATLGLRHCHL-----GSRFPSWLHSQKHLNYLDLSY 470
           ++  +   I         +     L +  L            L+    L     + 
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 50/365 (13%), Positives = 106/365 (29%), Gaps = 84/365 (23%)

Query: 235 AIANFSTLTTLDLLYNQFDNSFVPNWVFGLI----QLVFLDLRRNNFQGPIPEGLQNL-- 288
             +    +T+LDL  N   +      +         +  L+L  N+      +    L  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQ 73

Query: 289 ------TSLKHLLLDSNRFN----SSIPNWLYRFN-RLESLGVSNNSLQGRVIRSMASL- 336
                  ++  L L  N  +      +   L      +  L +  N    +         
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 337 ----CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNL 392
                ++ S+ L    L  +                + L+   +++  ++          
Sbjct: 134 SNLPASITSLNLRGNDLGIK--------------SSDELIQILAAIPANVN--------- 170

Query: 393 YYLDLSNNSI----VGPIPFSLGHL-STLQFIDLSYNELNGMNDNWI------PPFQLAT 441
             L+L  N++       +   L  + +++  +DLS N L   +   +       P  + +
Sbjct: 171 -SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 442 LGLRHCHLGS----RFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSAS------QIYVL 491
           L L    L             S KHL  + L Y  +         +  +      +I ++
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 492 DLSFNQIHGQ-IPNLTNAAQ-----LEVLSLGSNSFSGALPL--------ISSNLIELDF 537
           D +  +IH      ++N  +      +V SL +     A           I   L E   
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQ 349

Query: 538 SNNSI 542
           +   +
Sbjct: 350 TCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 46/282 (16%), Positives = 85/282 (30%), Gaps = 45/282 (15%)

Query: 457 LHSQKHLNYLDLSYSGITGS----IPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNA--- 508
                 +  LDLS + +       +   F ++ + +  L+LS N +  +    L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 509 --AQLEVLSLGSNSF--------SGALPLISSNLIELDFSNNSIS-GSIFHFICYRAHEL 557
             A +  L+L  N             L  I   +  LD   N  S  S   F    ++  
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 558 KKLQFLYLRGNFLQGE----LTDCWMNYQ-NLMILDLSNNKFTGNLPISLGSLI-----S 607
             +  L LRGN L  +    L         N+  L+L  N         L   +     S
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 608 LQSLHLRKNNLSGT-----IHSLKNC-TALLTLDVGENEFVENIPTWIGE---RFSRMVV 658
           + SL L  N L         +   +    +++L++  N         +         +  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 659 LILRSNKFHSLLPKGLCDLA-------FLQIVDLADNNLSGE 693
           + L  +   ++  +    L         + +VD     +   
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 45/336 (13%), Positives = 96/336 (28%), Gaps = 53/336 (15%)

Query: 117 KHLSYLDLSYNDFQGVQIPRFICSM-----GNLRYLNLSYTQF----VGMIPPQL-GNLS 166
             ++ LDLS N+         +         ++  LNLS           +   L    +
Sbjct: 22  HGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 167 NLQYLDLSWNFLYVENLWWL-PGLSF----LKDLDLSYVNLSKA-----SDWLRVTNTLP 216
           N+  L+LS NFL  ++   L   L+     +  LDL + + S                  
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA-- 138

Query: 217 SLVKLRLSRCQLHHLPPLAIANF-----STLTTLDLLYNQFDNSFVPNWVFGLI----QL 267
           S+  L L    L       +        + + +L+L  N   +         L      +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 268 VFLDLRRNNFQ----GPIPEGL-QNLTSLKHLLLDSNRFNSS----IPNWLYRFNRLESL 318
             LDL  N         +          +  L L  N  +      +         L+++
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 319 GVSNNSLQG-------RVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEIL 371
            +  + ++         +  +  ++  +  V  +  ++    S         +S   ++ 
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 372 VLRGSSVSGHLTYK-----LGQFKNLYYLDLSNNSI 402
            L    +     ++     L     L     +   +
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQF 252
            +L L+   L + S    +   LP LVKL L R QL  + P A    S +  L L  N+ 
Sbjct: 32  TELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 253 DNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFN 302
               + N +F GL QL  L+L  N     +  G  ++L SL  L L SN FN
Sbjct: 91  --KEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 220 KLRLSRCQLHHLPPLAI-ANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNF 277
           +L L+  +L  +    +      L  L+L  NQ   + +    F G   +  L L  N  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKI 90

Query: 278 QGPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESL 318
           +  I   +   L  LK L L  N+  S +      F  L SL
Sbjct: 91  KE-ISNKMFLGLHQLKTLNLYDNQI-SCVMPGS--FEHLNSL 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 28/134 (20%)

Query: 121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQL-GNLSNLQYLDLSWNFLY 179
            L L+ N+   +        + +L  L L   Q  G I P      S++Q L L  N   
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGEN--- 88

Query: 180 VENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANF 239
              +  +    FL                      L  L  L L   Q+  + P +  + 
Sbjct: 89  --KIKEISNKMFLG---------------------LHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 240 STLTTLDLLYNQFD 253
           ++LT+L+L  N F+
Sbjct: 126 NSLTSLNLASNPFN 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 84/650 (12%), Positives = 179/650 (27%), Gaps = 250/650 (38%)

Query: 190 SFLKDLDLSYVN------LSKAS------------------------------------- 206
           +F+ + D   V       LSK                                       
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 207 ----DWL----RVTNTLPSLVKLRLSRC--QLHH----LPPLAIANFSTLTTL-DLLYNQ 251
                +L    +     PS++         +L++         ++       L   L   
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 252 FDNSFVPNWVFG--------LIQLVFLDLR-RNNFQGPI----------PEG-LQNLTSL 291
                V   + G        +   V L  + +      I          PE  L+ L  L
Sbjct: 148 RPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 292 KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS-VMLSCVKLS 350
            + +          PNW  R +   ++ +  +S+Q  + R + S       ++L  V+ +
Sbjct: 206 LYQI---------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-N 255

Query: 351 QEISEIFDIFSGCVSSGLEILVL-RGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS 409
            +    F++   C     +IL+  R   V+  L+          ++ L ++S    +  +
Sbjct: 256 AKAWNAFNL--SC-----KILLTTRFKQVTDFLS-----AATTTHISLDHHS----MTLT 299

Query: 410 LGHLSTL--QFIDLSYNELNGMNDNWIP-------PFQLATLGLRHCHLGSRFPSWLHSQ 460
              + +L  +++D    +L        P       P +L+ +        + + +W H  
Sbjct: 300 PDEVKSLLLKYLDCRPQDL--------PREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 461 --KHLNYLDLSYSGITGS-----------------IP----NIFWSSASQIYVLDLSFNQ 497
             K    ++ S + +  +                 IP    ++ W    +  V+ +    
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---- 407

Query: 498 IHGQIPNLTNAAQLEVLSL---GSNSFSGALPLI-------SSNLIEL------------ 535
                       +L   SL        + ++P I         N   L            
Sbjct: 408 ----------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 536 -----DFSNNSISGSIFHFICY------RAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584
                D     +    +  I +          +   + ++L   FL+ ++          
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---------- 507

Query: 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVEN 644
                   +       + GS+++                       L  L   +    +N
Sbjct: 508 --------RHDSTAWNASGSILNT----------------------LQQLKFYKPYICDN 537

Query: 645 IPTWIGERFSRMVVLILRSNKF-----HSLLPKGLCDLAFLQIVDLADNN 689
            P      + R+V  IL    F      +L+     DL  L+I  +A++ 
Sbjct: 538 DPK-----YERLVNAIL---DFLPKIEENLICSKYTDL--LRIALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 77/559 (13%), Positives = 156/559 (27%), Gaps = 173/559 (30%)

Query: 455 SWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 514
            +L S         S       +  ++     ++Y  +  F + +          +  +L
Sbjct: 92  KFLMSPIKTEQRQPS------MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 515 SLGSNSF--------SG----ALPLISSNLIELDFSNNSISGSIF--HFICYRAHE--LK 558
            L             SG    AL +  S  ++           IF  +     + E  L+
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-----IFWLNLKNCNSPETVLE 200

Query: 559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
            LQ L  +                 +     S +  + N+ + + S+         +  L
Sbjct: 201 MLQKLLYQ-----------------IDPNWTSRSDHSSNIKLRIHSI---------QAEL 234

Query: 619 SGTIHSLKNCTALLTLDVGENEFVENIPTWIGERF---SRMVVLILRSNKFHSLLPKGLC 675
              + S      LL L    N  V+N        F    +  +L+    K          
Sbjct: 235 RRLLKSKPYENCLLVLL---N--VQN--AKAWNAFNLSCK--ILLTTRFK---------- 275

Query: 676 DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFL-LYASRAPSTAM--- 731
                Q+ D      +  +    H+     TL     K++  ++L       P   +   
Sbjct: 276 -----QVTDFLSAATTTHIS-LDHHSM---TLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 732 -----LLEDALVVMKGRAAEYKCILN--LVRIIDFSKNNFSGKIPLEVTNL-KALQSFNL 783
                ++ +++         +K +    L  II+ S N      P E   +   L  F  
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPP 383

Query: 784 SNNFFTGRIPESI-----GAMRSLESIDFSLNQLSGEIPQSM------SSLTYLNHLNLS 832
           S +     IP  +       +   + +   +N+L      S+       S   +  + L 
Sbjct: 384 SAH-----IPTILLSLIWFDVIKSDVMVV-VNKLHK---YSLVEKQPKESTISIPSIYLE 434

Query: 833 NNNLTGKIPSSTQLQSFDASSYAGNDLCGAPLPRN-CSEHVSTPED-------------- 877
              L  K+ +   L       Y         +P+   S+ +  P                
Sbjct: 435 ---LKVKLENEYALHRSIVDHYN--------IPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 878 -ENGDEDELDYWLYVSIALGFM-------GGFWCLIGPLLA--SRRWRYKYY-------- 919
            E+ +   L   +++     F+          W   G +L    +   YK Y        
Sbjct: 484 IEHPERMTLFRMVFLD--FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 920 --------NFLDRVGDRIV 930
                   +FL ++ + ++
Sbjct: 542 ERLVNAILDFLPKIEENLI 560

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.5 bits (149), Expect = 1e-09
 Identities = 67/518 (12%), Positives = 143/518 (27%), Gaps = 67/518 (12%)

Query: 79  HIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFI 138
            +  + L+    + D +         +   +         L  + L         +    
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA 126

Query: 139 CSMGNLRYLNLSYTQFVGM--IPPQLGNLSNLQYLDLSWNFLYVENLWWL----PGLSFL 192
            S  N + L LS  +      +        NL+ LDL  + +   +  WL       + L
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 193 KDLDLS-YVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQ 251
             L++S   +    S   R+    P+L  L+L+R          +     L  L      
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG-- 244

Query: 252 FDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYR 311
                            +    R +    +   L     L+ L    +   + +P     
Sbjct: 245 -----------------YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 312 FNRLESLGVSNNSLQGRVIRSMASLC-NLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEI 370
            +RL +L +S  ++Q   +  +   C  L+ + +    +      +  + S C    L  
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDA--GLEVLASTC--KDLRE 342

Query: 371 LVLRGSSVSGH----------LTYKLGQFKNLYYLDLSNNSIVGPIPFSLG-HLSTLQFI 419
           L +  S               L         L  +      +      ++  +   +   
Sbjct: 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402

Query: 420 DLSYNELNGMNDNWIPP------------FQLATLGLRHCHLGSRFPSWLHSQKHLNYLD 467
            L   E    +   + P              L  L L        F       K +  L 
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462

Query: 468 LSYSGITGSIPNIFWSSASQIYVLDLSFNQI--HGQIPNLTNAAQLEVLSL--------G 517
           ++++G +    +   S    +  L++          + N +    +  L +         
Sbjct: 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522

Query: 518 SNSFSGALPLISSNLIELDFSNNS--ISGSIFHFICYR 553
                  +P ++  +I+   + +S   S  +     YR
Sbjct: 523 CKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYR 560

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.4 bits (141), Expect = 8e-09
 Identities = 82/565 (14%), Positives = 168/565 (29%), Gaps = 83/565 (14%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFV---GMIPPQLGNL--- 165
           S  +++      +   +   V     I     +R + L          ++P   G     
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYP 95

Query: 166 ---------SNLQYLDLSWNFLYVENLWWL-PGLSFLKDLDLSYVNLSKASDWLRVTNTL 215
                    + L+ + L    +  + L  +       K L LS            +  T 
Sbjct: 96  WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFS----TLTTLDL--LYNQFDNSFVPNWVFGLIQLVF 269
            +L +L L    +  +    +++F     +L +L++  L ++   S +   V     L  
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 270 LDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV 329
           L L R      +   LQ    L+ L                    +     S  S+    
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYT------------AEVRPDVYSGLSVALSG 263

Query: 330 IRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQ 388
            + +  L      + + +           ++S C  S L  L L  ++V  + L   L Q
Sbjct: 264 CKELRCLSGFWDAVPAYLPA---------VYSVC--SRLTTLNLSYATVQSYDLVKLLCQ 312

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
              L  L + +      +         L+ + +  +E   M  N      L   GL    
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN----VALTEQGLVSV- 367

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
                         L  +      +T +       +   +    L           +   
Sbjct: 368 --------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC---------IIEPK 410

Query: 509 AQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN 568
           A   +     +   GA+     +L  L  S   ++  +F +I       KK++ L +   
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYI---GTYAKKMEMLSVAFA 466

Query: 569 FLQGELTDCWMNY-----QNLMILDLSNNKFTGN-LPISLGSLISLQSLHLRKNNLS-GT 621
                 +D  M++      +L  L++ +  F    L  +   L +++SL +   ++S G 
Sbjct: 467 ----GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522

Query: 622 IHSLKNCTALLTLDVGENEFVENIP 646
              L      L ++V +     +  
Sbjct: 523 CKLLGQKMPKLNVEVIDERGAPDSR 547

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQF 252
            +L L     +      +  +    L  + LS  ++  L   + +N + L TL L YN+ 
Sbjct: 34  TELYLDGNQFTLVP---KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 253 DNSFVPNWVF-GLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDSN 299
               +P   F GL  L  L L  N+    +PEG   +L++L HL + +N
Sbjct: 91  --RCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQ 278
           +L L   Q   +P   ++N+  LT +DL  N+   S + N  F  + QL+ L L  N  +
Sbjct: 35  ELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLR 91

Query: 279 GPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESL 318
             IP      L SL+ L L  N   S +P     FN L +L
Sbjct: 92  C-IPPRTFDGLKSLRLLSLHGNDI-SVVPEGA--FNDLSAL 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 6/89 (6%)

Query: 240 STLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGL-QNLTSLKHLLLDS 298
             +T L L  NQF  + VP  +     L  +DL  N     +      N+T L  L+L  
Sbjct: 31  RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSY 87

Query: 299 NRFNSSIPNWLY-RFNRLESLGVSNNSLQ 326
           NR    IP   +     L  L +  N + 
Sbjct: 88  NRL-RCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 145 RYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF-----LKDLDLSY 199
             L L   QF  ++P +L N  +L  +DLS N +       L   SF     L  L LSY
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-----LSNQSFSNMTQLLTLILSY 87

Query: 200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD 253
             L       R  + L SL  L L    +  +P  A  + S L+ L +  N   
Sbjct: 88  NRLRCIPP--RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 52/345 (15%), Positives = 103/345 (29%), Gaps = 50/345 (14%)

Query: 398 SNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSW- 456
            N +++  +   + +L  L+       +L  +    +PP +   L     H   +   + 
Sbjct: 10  HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSE--LLDHLFFHYEFQNQRFS 67

Query: 457 LHSQKHLNYLDLSYSGITGS----IPNIFWSSASQIYVLDLSFNQIHGQ-----IPNLTN 507
                 L  L+L+   +T      +  +  S    +  ++L+  Q+        +P    
Sbjct: 68  AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127

Query: 508 AAQLEVLSLGSNSF--------SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKK 559
                 L L  NS            L      +  L  SNN ++ +    +         
Sbjct: 128 ---ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 560 LQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFTGN----LPISLGSLISLQSL 611
           +  L L    L  E    L       + L  L+++ N         L  +     SL+ L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 612 HLRKNN--------LSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRS 663
           HL  N         L     + +    ++                + E +S ++  + R+
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA--------VSEYWSVILSEVQRN 296

Query: 664 NKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCI-HNLRAMVTL 707
               S     +     L + DL D+  +   P      LR    +
Sbjct: 297 LN--SWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEV 339

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 50/330 (15%), Positives = 92/330 (27%), Gaps = 70/330 (21%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
           L  L  L+L+      V+    + ++  L                       L  ++L+ 
Sbjct: 71  LSSLRQLNLAGVRMTPVKC-TVVAAV--LGS-----------------GRHALDEVNLAS 110

Query: 176 NFLYVENLWWL-PGLSFLKDLDLSYVNLSKA-----SDWLRVTNTLPSLVKLRLSRCQL- 228
             L    L  L P     + L L   +L         D L        +  LRLS   L 
Sbjct: 111 CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQC--QITTLRLSNNPLT 168

Query: 229 ----HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG 284
                 L    +A  +++T L LL+    +        GL  L                 
Sbjct: 169 AAGVAVLME-GLAGNTSVTHLSLLHTGLGDE-------GLELLA--------------AQ 206

Query: 285 LQNLTSLKHLLLDSNRFNSS----IPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR 340
           L     L+ L +  N    +    +         LE L +  N L     + +  L    
Sbjct: 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266

Query: 341 SVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNN 400
                 V    E + + + +S  +S           +++     ++ +   L   DL ++
Sbjct: 267 EGGARVVVSLTEGTAVSEYWSVILSEVQR-------NLNSWDRARVQRHLELLLRDLEDS 319

Query: 401 SIVGPIPFSLGHL----STLQFIDLSYNEL 426
                 P+    L      ++ +       
Sbjct: 320 RGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 36/233 (15%), Positives = 66/233 (28%), Gaps = 51/233 (21%)

Query: 116 LKHLSYLDLSYNDF--QGVQIPRFICSM-----GNLRYLNLSYTQF----VGMIPPQLGN 164
                 L L  N    +  +    +  +       +  L LS        V ++   L  
Sbjct: 125 FLRARKLGLQLNSLGPEACKD---LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181

Query: 165 LSNLQYLDLSWNFLYVENLWWL-PGL---SFLKDLDLSYVNLSKA-----SDWLRVTNTL 215
            +++ +L L    L  E L  L   L     L++L+++Y           +   R     
Sbjct: 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH--- 238

Query: 216 PSLVKLRLSRCQLHHLPPLAIA-------NFSTLTTLDLLYNQFD--------------N 254
           PSL  L L   +L       +          + +                         N
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298

Query: 255 SFVPNWVFGLIQLVFLDLRRNNFQ--GP--IPEGLQNLTSLKHLLLDSNRFNS 303
           S+    V   ++L+  DL  +      P    + L+    ++ LL       S
Sbjct: 299 SWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 43/263 (16%), Positives = 87/263 (33%), Gaps = 16/263 (6%)

Query: 432 NWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVL 491
           + +    L    L        F              L          +       Q++  
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE--QLFRC 354

Query: 492 DLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFIC 551
           +LS  +       L +  +L+ L   +      + L+   L  L +   ++     +F  
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ----YFST 410

Query: 552 YRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSL 611
            +A +  +  +L    +    E +   M Y ++ +L L++   T  +   L  L+ +  L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHL 468

Query: 612 HLRKNNLSGTIHSLKNCTALLTLDVGEN--EFVENIPTWIGERFSRMVVLILRSNKFHSL 669
            L  N L     +L     L  L   +N  E V+ +         R+  L+L +N+    
Sbjct: 469 DLSHNRLRALPPALAALRCLEVLQASDNALENVDGV-----ANLPRLQELLLCNNRLQQS 523

Query: 670 -LPKGLCDLAFLQIVDLADNNLS 691
              + L     L +++L  N+L 
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 4e-09
 Identities = 47/345 (13%), Positives = 98/345 (28%), Gaps = 30/345 (8%)

Query: 30  YHVGCLESERRALLRFKQDLQDPSNRLASWIGY--------EDCCAWAGVVCDNVTGHIV 81
           YH   L       +     +      L+                         +V     
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 82  ELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSM 141
           +   R    +     + +    +                   L  +  +     R   + 
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE--CWCRDSATD 348

Query: 142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVN 201
             L    LS  +   ++  +L +   LQ L+    +  +  +  +  L  L     +   
Sbjct: 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 202 LSK--ASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPN 259
            S   A D +R          L   R +      +    ++ +  L L +     + + +
Sbjct: 408 FSTLKAVDPMR-------AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCH 458

Query: 260 WVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLG 319
            +  L+ +  LDL  N  +  +P  L  L  L+ L    N    ++   +    RL+ L 
Sbjct: 459 -LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL-ENVDG-VANLPRLQELL 514

Query: 320 VSNNSLQG-RVIRSMASLCNLRSVMLS---CVKLSQEISEIFDIF 360
           + NN LQ    I+ + S   L  + L      +       + ++ 
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 7e-09
 Identities = 46/292 (15%), Positives = 84/292 (28%), Gaps = 37/292 (12%)

Query: 559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL 618
            L    L     Q      W    +     L  ++          +   L    L     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKS 361

Query: 619 SGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA 678
           +     L++C  L  L+                     ++L++R+        + L   +
Sbjct: 362 TVLQSELESCKELQELEPENK------------WCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 679 FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALV 738
            L+ VD                +RA    +  +   ++   L           L    L 
Sbjct: 410 TLKAVD---------------PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 739 VMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGA 798
           V+          L LV  +D S N     +P  +  L+ L+    S+N     +   +  
Sbjct: 455 VLCHLEQ-----LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VAN 506

Query: 799 MRSLESIDFSLNQLSG-EIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSF 849
           +  L+ +    N+L      Q + S   L  LNL  N+L  +     +L   
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 30/150 (20%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 100 NPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIP 159
           + RS  + + +   ++   +  L L++ D   +     +  +  + +L+LS+ +    +P
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLRA-LP 479

Query: 160 PQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV 219
           P L  L  L+ L  S N L  EN+  +  L  L++L L    L +++    + +  P LV
Sbjct: 480 PALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLV 536

Query: 220 KLRLSRCQLHHLPPL---AIANFSTLTTLD 246
            L L    L     +         +++++ 
Sbjct: 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 51/358 (14%), Positives = 104/358 (29%), Gaps = 59/358 (16%)

Query: 164 NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRL 223
           ++    ++      L V     L   S +  L L       + +W           + R 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWR------TPDGRNRP 296

Query: 224 SRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPE 283
           S   L  LP  ++ +     T  +++   D+      +    +                 
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-------------CR 343

Query: 284 GLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVM 343
                  L    L   +    + + L     L+ L   N      +I  M +L  L    
Sbjct: 344 DSATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPL---- 398

Query: 344 LSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIV 403
                  +E  + F             L    S      +    ++ ++  L L++  + 
Sbjct: 399 ----LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 404 GPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHL 463
                 L  L  +  +DLS+N L                           P  L + + L
Sbjct: 455 VLC--HLEQLLLVTHLDLSHNRL------------------------RALPPALAALRCL 488

Query: 464 NYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI--HGQIPNLTNAAQLEVLSLGSN 519
             L  S + +  ++  +  ++  ++  L L  N++     I  L +  +L +L+L  N
Sbjct: 489 EVLQASDNALE-NVDGV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 1e-05
 Identities = 40/338 (11%), Positives = 101/338 (29%), Gaps = 18/338 (5%)

Query: 513 VLSLGSNSFSGALPLISSNLI--ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFL 570
           +  L     SG    +  N++  EL+   N+          +  H     ++L  R    
Sbjct: 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH-----RWLLGRAEPH 242

Query: 571 QGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTA 630
                      +  + +  S     G+   +L  ++    L +      G          
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690
            L      ++  ++    I          +L  ++      +       L   +L+    
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKS 361

Query: 691 SGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCI 750
           +  +   + + + +  L            ++   RA    +  ++ L             
Sbjct: 362 T-VLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLK---AVD 415

Query: 751 LNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLN 810
                 +D  ++ F  +  +       ++  +L++   T  +   +  +  +  +D S N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHN 473

Query: 811 QLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQS 848
           +L   +P ++++L  L  L  S+N L   +     L  
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPR 509

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-GLIQLVFLDLRRNNFQ 278
            L L   Q+  L P    +   L  L L  NQ     +P  VF  L QL  LDL  N   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 279 GPIPEGL-QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLC 337
             +P  +   L  LK L +  N+  + +P  + R   L  L +  N L+     +   L 
Sbjct: 102 V-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 338 NLRSVML 344
           +L    L
Sbjct: 160 SLTHAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 41/167 (24%), Positives = 59/167 (35%), Gaps = 30/167 (17%)

Query: 145 RYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK 204
           + L L   Q   + P    +L NL+ L L  N L       LP                 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-----LPV---------------- 81

Query: 205 ASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGL 264
                 V ++L  L  L L   QL  LP         L  L +  N+   + +P  +  L
Sbjct: 82  -----GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL--TELPRGIERL 134

Query: 265 IQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLY 310
             L  L L +N  +  IP G    L+SL H  L  N ++    + +Y
Sbjct: 135 THLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDCECRDIMY 180

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 14/138 (10%)

Query: 121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYV 180
            L L  N    ++   F  S+ NL+ L L   Q   +      +L+ L  LDL  N L V
Sbjct: 44  ILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 181 ENLWWLPG-----LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
                LP      L  LK+L +    L++     R    L  L  L L + QL  +P  A
Sbjct: 103 -----LPSAVFDRLVHLKELFMCCNKLTELP---RGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 236 IANFSTLTTLDLLYNQFD 253
               S+LT   L  N +D
Sbjct: 155 FDRLSSLTHAYLFGNPWD 172

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.8 bits (142), Expect = 6e-09
 Identities = 81/545 (14%), Positives = 148/545 (27%), Gaps = 87/545 (15%)

Query: 112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYL 171
               +   +   ++          R      NLR L L       M      N       
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102

Query: 172 DLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRC-QLHH 230
            ++              L  LK +    + +S              L  L+L +C     
Sbjct: 103 WVTEI---------SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT 153

Query: 231 LPPLAIA-NFSTLTTLDLLYNQFDNSFVPNWVFGLIQ----LVFLDLRRNNFQGPIPEGL 285
              L+I  +   + TL +  + F       W+  L Q    L  L+     F    P+ L
Sbjct: 154 DGLLSIVTHCRKIKTLLMEESSFSEK-DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 286 ----QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS 341
               +N  SL  + +  +     +  +      LE     + +    +     +L   R 
Sbjct: 213 ETIARNCRSLVSVKV-GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271

Query: 342 V-MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSS-VSGHLTYKLGQFKNLYYLDLSN 399
           +  L    +     E+  +F     + +  L L  +   +      + +  NL  L+  N
Sbjct: 272 LCRLGLSYMGPN--EMPILFPFA--AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327

Query: 400 NSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHS 459
                 +     +   L+ + +         ++         L      L          
Sbjct: 328 VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL----IALAQGCQE---- 379

Query: 460 QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSN 519
              L Y+ +  S IT                 + S   I   + NL +     ++ L   
Sbjct: 380 ---LEYMAVYVSDIT-----------------NESLESIGTYLKNLCD---FRLVLLDRE 416

Query: 520 SFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM 579
                LPL +                    +       KKL+         QG LTD  +
Sbjct: 417 ERITDLPLDNG-------------------VRSLLIGCKKLRRFAFYLR--QGGLTDLGL 455

Query: 580 NY-----QNLMILDLSNNKFTGN-LPISLGSLISLQSLHLRKNNLS--GTIHSLKNCTAL 631
           +Y      N+  + L     +   L        +LQ L +R    S      ++    +L
Sbjct: 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515

Query: 632 LTLDV 636
             L V
Sbjct: 516 RYLWV 520

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 69/556 (12%), Positives = 147/556 (26%), Gaps = 126/556 (22%)

Query: 311 RFNRLESLGVSNNSLQGRVIRSMASLC----NLRSVMLSCVKLSQEISEIFDIFSGCVSS 366
           R+ +++S    + ++      +   L     NLRS+ L     +   + I + + G V+ 
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102

Query: 367 GLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI--VGPIPFSLGHLSTLQFIDLSYN 424
            +  +                  + L  +      +  +     +      L+ + L   
Sbjct: 103 WVTEIS--------------NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148

Query: 425 ELNGMNDNWIPPF-----QLATLGLRHCHLGSRFPSWLH----SQKHLNYLDLSYSG--- 472
             +G   + +        ++ TL +       +   WLH        L  L+   +    
Sbjct: 149 --SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK 206

Query: 473 ITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNL 532
           I+         +   +  + +   +I   +     AA LE    GS +    +P    NL
Sbjct: 207 ISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266

Query: 533 IELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNN 592
           +                      +L +L   Y+  N +             +  LDL   
Sbjct: 267 VFP-------------------RKLCRLGLSYMGPNEMPILFPFA----AQIRKLDLLYA 303

Query: 593 KFTGNLPISL-GSLISLQSLHLRKN-NLSGTIHSLKNCTALLTLDVGENEFVENIPTWIG 650
                   +L     +L+ L  R      G     + C  L  L +              
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI-------------- 349

Query: 651 ERFSRMVVLILRSNKFHSLLPKGLCDLA----FLQIVDLADNNLSGEVPRCI-HNLRAMV 705
               R        ++   +  +GL  LA     L+ + +  ++++ E    I   L+ + 
Sbjct: 350 ---ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406

Query: 706 TLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFS 765
                                                       ++ L R    +     
Sbjct: 407 DFR-----------------------------------------LVLLDREERITDLPLD 425

Query: 766 GKIPLEVTNLKALQSFNLSNN--FFTGRIPESIGAM-RSLESIDFSLNQLSGE-IPQSMS 821
             +   +   K L+ F         T      IG    ++  +       S E + +   
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485

Query: 822 SLTYLNHLNLSNNNLT 837
               L  L +     +
Sbjct: 486 GCPNLQKLEMRGCCFS 501

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 31/158 (19%), Positives = 48/158 (30%), Gaps = 35/158 (22%)

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS--GALPLISSNLIELDFSNNSISGSIF 547
           ++ L+   I  Q    TNA +   L L          L         +DFS+N I     
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---- 55

Query: 548 HFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 607
                   +L     L                  + L  L ++NN+          +L  
Sbjct: 56  --------KLDGFPLL------------------RRLKTLLVNNNRICRIGEGLDQALPD 89

Query: 608 LQSLHLRKNNLS--GTIHSLKNCTALLTLDVGENEFVE 643
           L  L L  N+L   G +  L +  +L  L +  N    
Sbjct: 90  LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 22/147 (14%)

Query: 283 EGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
               N    + L L   +    I N     ++ +++  S+N +  R +     L  L+++
Sbjct: 13  AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTL 69

Query: 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVS--GHLTYKLGQFKNLYYLDLSNN 400
           +++  +    I  I +     +   L  L+L  +S+   G L   L   K+L YL +  N
Sbjct: 70  LVNNNR----ICRIGEGLDQALPD-LTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123

Query: 401 SIVGPI-------PFSLGHLSTLQFID 420
               P+        + +  +  ++ +D
Sbjct: 124 ----PVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
           L     +D S N+ + +        +  L+ L ++  +   +       L +L  L L+ 
Sbjct: 41  LDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 176 NFLY-VENLWWLPGLSFLKDLDLSYVNLSKASD-WLRVTNTLPSLVKL 221
           N L  + +L  L  L  L  L +    ++      L V   +P +  L
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 160 PQLGNLSNLQYLDLSWNFL-YVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSL 218
            Q  N    + LDL    +  +ENL     L     +D S   + K   +      L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLDGF----PLLRRL 66

Query: 219 VKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN 275
             L ++  ++  +          LT L L  N        + +  L  L +L + RN
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 29/137 (21%)

Query: 385 KLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGL 444
           +         LDL    I   I      L     ID S NE+  ++              
Sbjct: 14  QYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDG------------- 59

Query: 445 RHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH--GQI 502
                           + L  L ++ + I   I      +   +  L L+ N +   G +
Sbjct: 60  ------------FPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDL 106

Query: 503 PNLTNAAQLEVLSLGSN 519
             L +   L  L +  N
Sbjct: 107 DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 601 SLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEF--VENIPTWIGERFSRMVV 658
              + +  + L LR   +    +          +D  +NE   ++  P        R+  
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP-----LLRRLKT 68

Query: 659 LILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707
           L++ +N+   +       L  L  + L +N+L       +  L ++ +L
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLV--ELGDLDPLASLKSL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIP--EGLQNLTSLKHLL 295
           N      LDL   +     + N    L Q   +D   N     I   +G   L  LK LL
Sbjct: 17  NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE----IRKLDGFPLLRRLKTLL 70

Query: 296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG-RVIRSMASLCNLRSVMLS 345
           +++NR              L  L ++NNSL     +  +ASL +L  + + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 47/168 (27%), Positives = 64/168 (38%), Gaps = 31/168 (18%)

Query: 145 RYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK 204
            YL+L       +       L++L  L L  N      L  LP                 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-----KLQSLPN---------------- 69

Query: 205 ASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG- 263
                 V N L SL  L LS  QL  LP       + L  L L  NQ     +P+ VF  
Sbjct: 70  -----GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL--QSLPDGVFDK 122

Query: 264 LIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLY 310
           L QL  L L +N  +  +P+G    LTSL+++ L  N ++ + P   Y
Sbjct: 123 LTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 32/171 (18%)

Query: 491 LDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFI 550
           L      I      L+     + L+L            S+N IE       IS       
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLAL------------STNNIE------KISS------ 65

Query: 551 CYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 610
                 ++ L+ L L  N ++ ++ +       L  L +S N+   +L   +  L++L+ 
Sbjct: 66  ---LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRV 119

Query: 611 LHLRKNNLS--GTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVL 659
           L++  N ++  G I  L     L  L +  N    +          R+ V+
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 13/118 (11%)

Query: 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLD 172
           L  +++L  L L  N  +  +I         L  L +SY Q   +    +  L NL+ L 
Sbjct: 66  LSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLY 121

Query: 173 LSWNFLY-VENLWWLPGLSFLKDLDLS--------YVNLSKASDWLRVTNTLPSLVKL 221
           +S N +     +  L  L  L+DL L+          N + +   + V   LP+L KL
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 158 IPPQLGNLSNLQYLDLSWNFLY-VENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLP 216
           +   L  L   ++L LS N +  + +   L G+  L+ L L    + K  +   V +   
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISS---LSGMENLRILSLGRNLIKKIENLDAVAD--- 93

Query: 217 SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN 276
           +L +L +S  Q+  L  +       L  L +  N+  N    + +  L +L  L L  N 
Sbjct: 94  TLEELWISYNQIASLSGI--EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151

Query: 277 FQGPIPEG----------LQNLTSLKHL 294
                 E           ++ L +LK L
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 17/149 (11%)

Query: 108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSN 167
           K++ +L  LK   +L LS N+ + +     +  M NLR L+L        I         
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKK-IENLDAVADT 94

Query: 168 LQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ 227
           L+ L +S+N +   +L  +  L  L+ L +S   ++   + +     L  L  L L+   
Sbjct: 95  LEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNP 151

Query: 228 LHHLPPLA----------IANFSTLTTLD 246
           L++               +     L  LD
Sbjct: 152 LYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN--EFVEN 644
           L          +  +L +L + + L L  NN+   I SL     L  L +G N  + +EN
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIKKIEN 87

Query: 645 IPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS 691
           +          +  L +  N+  SL   G+  L  L+++ +++N ++
Sbjct: 88  L----DAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 37/139 (26%)

Query: 386 LGQFKNLYYLDLSNNSIV---GPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATL 442
           L   K   +L LS N+I          L  +  L+ + L  N +                
Sbjct: 44  LSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLI---------------- 82

Query: 443 GLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH--G 500
                    +  +       L  L +SY+ I  S+  I       + VL +S N+I   G
Sbjct: 83  --------KKIENLDAVADTLEELWISYNQIA-SLSGI--EKLVNLRVLYMSNNKITNWG 131

Query: 501 QIPNLTNAAQLEVLSLGSN 519
           +I  L    +LE L L  N
Sbjct: 132 EIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 12/113 (10%)

Query: 580 NYQNLMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGE 638
             +    L LS N       IS L  + +L+ L L +N +    +       L  L +  
Sbjct: 46  TLKACKHLALSTNNIEK---ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102

Query: 639 N--EFVENIPTWIGERFSRMVVLILRSNKFHSLLP-KGLCDLAFLQIVDLADN 688
           N    +  I     E+   + VL + +NK  +      L  L  L+ + LA N
Sbjct: 103 NQIASLSGI-----EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 42/164 (25%)

Query: 265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNS 324
            + V L       +  +   L  L + KHL L +N                         
Sbjct: 25  AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNI----------------------- 60

Query: 325 LQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRG---SSVSGH 381
                I S++ + NLR + L        I +I ++ +   +  LE L +     +S+SG 
Sbjct: 61  ---EKISSLSGMENLRILSLG----RNLIKKIENLDAVADT--LEELWISYNQIASLSG- 110

Query: 382 LTYKLGQFKNLYYLDLSNNSIVGPIPFS-LGHLSTLQFIDLSYN 424
               + +  NL  L +SNN I        L  L  L+ + L+ N
Sbjct: 111 ----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTL 245
           LPG   L +L +      +  +   +   L  L  L + +  L  + P A      L+ L
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 246 DLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQ 278
           +L +N      +       + L  L L  N   
Sbjct: 86  NLSFNAL--ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 228 LHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQN 287
           LHHLP         LT L +   Q         + GL +L  L + ++  +   P+    
Sbjct: 24  LHHLPGA-----ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 288 LTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ 326
              L  L L  N    S+     +   L+ L +S N L 
Sbjct: 79  TPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 257 VPNWVFGLIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRL 315
             + + G   L  L +        +    L+ L  L++L +  +      P+  +   RL
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 316 ESLGVSNNSLQ 326
             L +S N+L+
Sbjct: 83  SRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 768 IPLEVTNLKALQSFNLSNNFFTGRIP-ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYL 826
               +   + L    + N      +    +  +  L ++    + L    P +      L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 827 NHLNLSNNNLT 837
           + LNLS N L 
Sbjct: 83  SRLNLSFNALE 93

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLS 166
           GK+     +  +L +L L       V     +  +  L+ L LS  +  G +      L 
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAEKLP 95

Query: 167 NLQYLDLSWNFLY-VENLWWLPGLSFLKDLDLSYVNLSKASD-WLRVTNTLPSLVKL 221
           NL +L+LS N L  +  L  L  L  LK LDL    ++  +D    V   LP L  L
Sbjct: 96  NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 556 ELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 615
           E   L+FL L    L   +++       L  L+LS N+  G L +    L +L  L+L  
Sbjct: 47  EFVNLEFLSLINVGLI-SVSNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 616 NNLS--GTIHSLKNCTALLTLDVGENEFVE 643
           N L    T+  LK    L +LD+   E   
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 3/113 (2%)

Query: 234 LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKH 293
           L     + +  L L   + ++  +       + L FL L            L  L  LK 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKK 75

Query: 294 LLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG-RVIRSMASLCNLRSVMLS 345
           L L  NR    +     +   L  L +S N L+    +  +  L  L+S+ L 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFH 548
           VLD   +              LE LSL +        L     L +L+ S N I G +  
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDM 89

Query: 549 FICYRAHELKKLQFLYLRGNFLQ--GELTDCWMNYQNLMILDLSNNKFT 595
                A +L  L  L L GN L+    L +     + L  LDL N + T
Sbjct: 90  L----AEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG 814
            ++D  K+N  GKI         L+  +L N      +  ++  +  L+ ++ S N++ G
Sbjct: 29  LVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG 85

Query: 815 EIPQSMSSLTYLNHLNLSNNNLT 837
            +      L  L HLNLS N L 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK 108

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 5/111 (4%)

Query: 113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLD 172
             + + L +L         +     +  +  L+ L LS  +  G +        NL +L+
Sbjct: 38  TDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 173 LSWNFLY-VENLWWLPGLSFLKDLDLSYVNLSKASD-WLRVTNTLPSLVKL 221
           LS N +  +  +  L  L  LK LDL    ++  +D    V   LP L  L
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL 589
           S++ EL   N+  +      +     E ++L+FL      L   + +       L  L+L
Sbjct: 17  SDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLT-SIANLPKL-NKLKKLEL 71

Query: 590 SNNKFTGNLPISLGSLISLQSLHLRKNNLS--GTIHSLKNCTALLTLDVGENEFVE 643
           S+N+ +G L +      +L  L+L  N +    TI  LK    L +LD+   E   
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLD 297
             S +  L L  ++ +   +        +L FL              L  L  LK L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQG-RVIRSMASLCNLRSVMLS 345
            NR +  +     +   L  L +S N ++    I  +  L NL+S+ L 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 284 GLQNLTSLKHLLLDSNRFNS-SIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV 342
             +  + +K L+LD++R N   +      F  LE L   N  L    I ++  L  L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKL 69

Query: 343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVS--GHLTYKLGQFKNLYYLDLSNN 400
            LS  +    +S   ++ +    + L  L L G+ +     +   L + +NL  LDL N 
Sbjct: 70  ELSDNR----VSGGLEVLAEKCPN-LTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123

Query: 401 SIVGPI---PFSLGHLSTLQFID 420
            +             L  L ++D
Sbjct: 124 EVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG 814
            ++D S++N  GK+       + L+  +  N   T  I  ++  +  L+ ++ S N++SG
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

Query: 815 EIPQSMSSLTYLNHLNLSNNNLT 837
            +         L HLNLS N + 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS--GALPLISSNLIELDFSNNSISGSIF 547
           VLD S +             +LE LS  +   +    LP + + L +L+ S+N +SG + 
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL-NKLKKLELSDNRVSGGLE 81

Query: 548 HFICYRAHELKKLQFLYLRGNFLQG-ELTDCWMNYQNLMILDLSNN 592
                 A +   L  L L GN ++     +     +NL  LDL N 
Sbjct: 82  VL----AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQ 278
            L L   Q+  L P      + LT LDL  NQ   + +P  VF  L QL  L L  N  +
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVLPAGVFDKLTQLTQLSLNDNQLK 91

Query: 279 GPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLY 310
             IP G   NL SL H+ L +N ++ +  + LY
Sbjct: 92  S-IPRGAFDNLKSLTHIWLLNNPWDCACSDILY 123

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFG-LIQLVFLDLRRNNFQ 278
           +L L+  Q+  L P    +   L  L    N+   + +P  VF  L QL  LDL  N+ +
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL--TAIPTGVFDKLTQLTQLDLNDNHLK 94

Query: 279 GPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLY 310
             IP G   NL SL H+ L +N ++    + +Y
Sbjct: 95  S-IPRGAFDNLKSLTHIYLYNNPWDCECRDIMY 126

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 48/244 (19%), Positives = 83/244 (34%), Gaps = 19/244 (7%)

Query: 65  CCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSM-----LVGKVNPSLLDLKHL 119
           C  W  +  D      ++L  +N               +       + +          +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW-NFL 178
            ++DLS +  +   +   +     L+ L+L   +    I   L   SNL  L+LS  +  
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 179 YVENLWWLP-GLSFLKDLDLSY-VNLSKASDWLRVTNTLPSLVKLRLSRCQL----HHLP 232
               L  L    S L +L+LS+  + ++    + V +   ++ +L LS  +       L 
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 233 PLAIANFSTLTTLDLLYNQF--DNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTS 290
            L       L  LDL  +    ++ F     F L  L  L L R       PE L  L  
Sbjct: 216 TLV-RRCPNLVHLDLSDSVMLKNDCF--QEFFQLNYLQHLSLSRCYDII--PETLLELGE 270

Query: 291 LKHL 294
           +  L
Sbjct: 271 IPTL 274

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 770 LEVTNLKALQSFNLSNNFFTGRIPESIGA---MRSLESIDFSLNQLSGE----IPQSMSS 822
                   L+   + +      + E       +  LE++D S   L+ E    +   +  
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 823 LTYLNHLNLSNNNLT 837
           + +L  +N+  N L+
Sbjct: 306 IKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 27/198 (13%), Positives = 61/198 (30%), Gaps = 24/198 (12%)

Query: 400 NSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATL-----GLRHCHLGSRFP 454
           + I   I  +    +  + +     +      +WI    L+ +      L +  +     
Sbjct: 125 SDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184

Query: 455 SWLHSQKH--LNYLDLSYSGITGS-IPNIFWSSASQIYVLDLSFNQIH----GQIPNLTN 507
             +  +    L  L++   G+  S + +I  S    +  L L          G +     
Sbjct: 185 LSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244

Query: 508 AAQ------LEVLSLGSNSFSGALP------LISSNLIELDFSNNSISGSIFHFICYRAH 555
                    L+ L +        +        I   L  +D S   ++      +     
Sbjct: 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 556 ELKKLQFLYLRGNFLQGE 573
           ++K L+F+ ++ N+L  E
Sbjct: 305 KIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 3e-05
 Identities = 20/195 (10%), Positives = 62/195 (31%), Gaps = 18/195 (9%)

Query: 164 NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDL-DLSYVNLSKASDWLRVTNTLPSLVKLR 222
           +   L + D+ +    +  +  +     L  +  L+ + +   ++        P+L  L 
Sbjct: 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE 199

Query: 223 LSRCQL--HHLPPLAIANFSTLTTLDLLY---NQFDNSFVPNWVFGLI-----QLVFLDL 272
           +    L    +  +  ++   L  L L     +   +  +  +           L +L +
Sbjct: 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259

Query: 273 RRNNFQGPIPEGL---QNLTSLKHLLLDSNRFNSS----IPNWLYRFNRLESLGVSNNSL 325
                Q  + E       L  L+ + + +          + + + +   L+ + +  N L
Sbjct: 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

Query: 326 QGRVIRSMASLCNLR 340
              + + +     ++
Sbjct: 320 SDEMKKELQKSLPMK 334

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 39/259 (15%), Positives = 88/259 (33%), Gaps = 38/259 (14%)

Query: 66  CAWAGVVCDNVTGHIVELNLRNP----FTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSY 121
             + G  C ++   IVE   +        + D+   +     +    ++P L  +  L+ 
Sbjct: 117 WGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNN 176

Query: 122 LDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLG--NLSNLQYLDLSWNFLY 179
           L +       + I +      NL+ L +        +   +   +L NL+ L L   ++ 
Sbjct: 177 LKIKGT--NNLSIGKKPRP--NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL---YVG 229

Query: 180 VENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANF 239
           VE+  +   ++  + L       SK        +  P+L  L +   +  ++        
Sbjct: 230 VEDYGFDGDMNVFRPL------FSK--------DRFPNLKWLGIVDAEEQNVVVEMFLES 275

Query: 240 ---STLTTLDLLYNQFDNSFVPNWVFGLI---QLVFLDLRRNNFQGPIPEGLQNLTSLKH 293
                L T+D+      +      +  +     L F++++ N       E  + L   K 
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS---DEMKKELQ--KS 330

Query: 294 LLLDSNRFNSSIPNWLYRF 312
           L +  +  +S   +  Y +
Sbjct: 331 LPMKIDVSDSQEYDDDYSY 349

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 37/168 (22%), Positives = 52/168 (30%), Gaps = 55/168 (32%)

Query: 145 RYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK 204
             L L   +   +       L+ L  L LS N                            
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQN---------------------------- 62

Query: 205 ASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF-G 263
                                 Q+  LP       + LT L L  N+     +PN VF  
Sbjct: 63  ----------------------QIQSLPDGVFDKLTKLTILYLHENKL--QSLPNGVFDK 98

Query: 264 LIQLVFLDLRRNNFQGPIPEG-LQNLTSLKHLLLDSNRFNSSIPNWLY 310
           L QL  L L  N  +  +P+G    LTSL+ + L +N ++ S P   Y
Sbjct: 99  LTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	938
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.65

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.2e-92  Score=860.10  Aligned_cols=705  Identities=30%  Similarity=0.440  Sum_probs=503.2

Q ss_pred             CcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCcc---cc
Q 036642           34 CLESERRALLRFKQDLQDPSNRLASWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGK---VN  110 (938)
Q Consensus        34 ~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~---l~  110 (938)
                      +.++|++||++||+++.||. .+++|..+++||.|+||+|+  .|||++++|++.               .+.|.   +|
T Consensus         9 ~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~---------------~l~g~~~~l~   70 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK---------------PLNVGFSAVS   70 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS---------------CCCEEHHHHH
T ss_pred             CCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCC---------------CcCCccCccC
Confidence            46889999999999999988 89999765899999999998  699999999983               77888   89


Q ss_pred             CCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCc--CCCCCCcccEEECCCCcccccCcccc-C
Q 036642          111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPP--QLGNLSNLQYLDLSWNFLYVENLWWL-P  187 (938)
Q Consensus       111 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~L~~L~~L~Ls~n~i~~~~~~~~-~  187 (938)
                      +++.++++|+.++++.+.+.  .+|..++++++|++|+|++|.+++.+|.  .++++++|++|++++|.+....+..+ .
T Consensus        71 ~~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           71 SSLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             HHTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred             hhHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence            99999999999999999876  4678899999999999999999998998  99999999999999999876555544 6


Q ss_pred             CCCCCCEEeCCCCCCCCCcch-hhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642          188 GLSFLKDLDLSYVNLSKASDW-LRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ  266 (938)
Q Consensus       188 ~l~~L~~L~Ls~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  266 (938)
                      ++++|++|++++|++++.... ...+.++++|++|++++|.+++..+.  ..+++|++|++++|.+.+.. |. ++++++
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~-~~-l~~l~~  224 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGI-PF-LGDCSA  224 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCC-CB-CTTCCS
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCC-cc-cccCCC
Confidence            777888888887777654321 11256666677777776666654432  55666666666666665533 33 555566


Q ss_pred             CCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhcc-CCCCeeecC
Q 036642          267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASL-CNLRSVMLS  345 (938)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~  345 (938)
                      |++|++++|.+++.+|..+..+++|++|++++|.+++.+|..  .+++|++|++++|.+++.+|..+... +        
T Consensus       225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~--------  294 (768)
T 3rgz_A          225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD--------  294 (768)
T ss_dssp             CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT--------
T ss_pred             CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC--------
Confidence            666666666655555555555555666666555555544443  45555555555555555544444332 4        


Q ss_pred             CCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeeccccccc-ccCCCCCcEEEccCc
Q 036642          346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS-LGHLSTLQFIDLSYN  424 (938)
Q Consensus       346 ~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n  424 (938)
                                           +|++|++++|.+++.+|..++.+++|++|++++|++++.+|.. +..+++|++|++++|
T Consensus       295 ---------------------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          295 ---------------------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             ---------------------TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             ---------------------cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence                                 4555555555555555555566666666666666666555543 556666666666666


Q ss_pred             cCCC-CCCCCCCcc-ccceeecccccCCCCCCcccCC--CCCCcEEEccCcccccccchhHhhcCcCccEEecccccccc
Q 036642          425 ELNG-MNDNWIPPF-QLATLGLRHCHLGSRFPSWLHS--QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHG  500 (938)
Q Consensus       425 ~l~~-~~~~~~~~~-~L~~L~L~~~~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  500 (938)
                      ++++ ++..+.... +|++|++++|.+.+.+|..+..  +++|++|++++|.+++.+|..+ ..+++|+.|++++|++++
T Consensus       354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEES
T ss_pred             ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccC
Confidence            5553 111111111 2222233333222233333333  4455555555555555544443 334455555555555554


Q ss_pred             cCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh
Q 036642          501 QIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM  579 (938)
Q Consensus       501 ~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~  579 (938)
                      .+| .+..+++|                     ++|++++|.+++.+|    ..+..+++|++|++++|++++.+|..+.
T Consensus       433 ~~p~~l~~l~~L---------------------~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          433 TIPSSLGSLSKL---------------------RDLKLWLNMLEGEIP----QELMYVKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             CCCGGGGGCTTC---------------------CEEECCSSCCCSCCC----GGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cccHHHhcCCCC---------------------CEEECCCCcccCcCC----HHHcCCCCceEEEecCCcccCcCCHHHh
Confidence            444 34444444                     444444444444443    2344577788888888888888888888


Q ss_pred             cCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccE
Q 036642          580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVV  658 (938)
Q Consensus       580 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~  658 (938)
                      ++++|++|++++|++++.+|.+++.+++|++|+|++|+++|.+| .+.++++|+.|++++|+++|.+|.+++ ....+..
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~  566 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIA  566 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBC
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhh
Confidence            88888888888888888888888888888888888888887777 788888888888888888888888776 3444433


Q ss_pred             EeeCC---------C-------------cccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhh
Q 036642          659 LILRS---------N-------------KFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQ  716 (938)
Q Consensus       659 L~L~~---------n-------------~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~  716 (938)
                      +.+..         +             .+.+..+..+..++.++.++++.|.+.|.+|..+..++.|            
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L------------  634 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM------------  634 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC------------
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc------------
Confidence            33222         1             2345556666667777777788888888887777665554            


Q ss_pred             hhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccc
Q 036642          717 YQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI  796 (938)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~  796 (938)
                                                            +.|||++|+++|.+|.++++++.|+.|+|++|+++|.||+.|
T Consensus       635 --------------------------------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  676 (768)
T 3rgz_A          635 --------------------------------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV  676 (768)
T ss_dssp             --------------------------------------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             --------------------------------------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence                                                  789999999999999999999999999999999999999999


Q ss_pred             cccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCC-CCCCCCCCCCCCCC
Q 036642          797 GAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNCSEH  871 (938)
Q Consensus       797 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c~~~  871 (938)
                      +++++|++||||+|+++|.+|..++++++|++||+++|+++|.||.++||++|+..+|.|| ++||.|+. .|...
T Consensus       677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999 99999987 89633

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-71  Score=680.87  Aligned_cols=617  Identities=31%  Similarity=0.395  Sum_probs=498.3

Q ss_pred             ccCCccCCCCCCEEeCCCCCCCCCcccc--cccCCCCCcEEecCCCcCCCCCCcCC-CCCCcccEEECCCCcccccCccc
Q 036642          109 VNPSLLDLKHLSYLDLSYNDFQGVQIPR--FICSMGNLRYLNLSYTQFVGMIPPQL-GNLSNLQYLDLSWNFLYVENLWW  185 (938)
Q Consensus       109 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~L~~L~~L~Ls~n~i~~~~~~~  185 (938)
                      +|+.++++++|++|||++|.+++. +|.  .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+....+..
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG  170 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence            458899999999999999999974 787  89999999999999999999988877 89999999999999998877766


Q ss_pred             ---cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCccccc
Q 036642          186 ---LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF  262 (938)
Q Consensus       186 ---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  262 (938)
                         +.++++|++|++++|.+++..+    +..+++|++|++++|.+++..+. ++++++|++|++++|.+++.. +..+.
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~  244 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAIS  244 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTT
T ss_pred             hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHh
Confidence               8999999999999999987543    37899999999999999998877 999999999999999999876 88999


Q ss_pred             CCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcC-CCCCEEEccCCcCCchhhHhhhccCCCCe
Q 036642          263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRF-NRLESLGVSNNSLQGRVIRSMASLCNLRS  341 (938)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  341 (938)
                      .+++|++|++++|.+++.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..++.+++|+.
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  322 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES  322 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred             cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence            9999999999999999888875  89999999999999999999998875 99999999999999999999999999999


Q ss_pred             eecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCC-CccEEEccCCeecccccccccC--CCCCcE
Q 036642          342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFK-NLYYLDLSNNSIVGPIPFSLGH--LSTLQF  418 (938)
Q Consensus       342 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~  418 (938)
                      |++++|.+.+.+|..   .++.++ +|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..  +++|++
T Consensus       323 L~L~~n~l~~~ip~~---~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~  398 (768)
T 3rgz_A          323 LALSSNNFSGELPMD---TLLKMR-GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE  398 (768)
T ss_dssp             EECCSSEEEEECCHH---HHTTCT-TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred             EECCCCcccCcCCHH---HHhcCC-CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence            999999998777652   244444 677777777777777777666665 7777777777777666666555  566666


Q ss_pred             EEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccc
Q 036642          419 IDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI  498 (938)
Q Consensus       419 L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  498 (938)
                      |++++|.+++                       .+|..+..+++|++|++++|.+++.+|..+ ..+++|+.|++++|.+
T Consensus       399 L~L~~n~l~~-----------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l  454 (768)
T 3rgz_A          399 LYLQNNGFTG-----------------------KIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNML  454 (768)
T ss_dssp             EECCSSEEEE-----------------------ECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCC
T ss_pred             EECCCCcccc-----------------------ccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcc
Confidence            6666666554                       577788888888889998888888888765 5578889999998888


Q ss_pred             cccCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchh
Q 036642          499 HGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC  577 (938)
Q Consensus       499 ~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~  577 (938)
                      ++.+| .+..+++|++|++++|++++.+|..                         +..+++|++|++++|++++.+|..
T Consensus       455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-------------------------l~~l~~L~~L~L~~N~l~~~~p~~  509 (768)
T 3rgz_A          455 EGEIPQELMYVKTLETLILDFNDLTGEIPSG-------------------------LSNCTNLNWISLSNNRLTGEIPKW  509 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-------------------------GGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cCcCCHHHcCCCCceEEEecCCcccCcCCHH-------------------------HhcCCCCCEEEccCCccCCcCChH
Confidence            88777 6777777777777777777666642                         233455555555555555555555


Q ss_pred             hhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCC-----------------
Q 036642          578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGEN-----------------  639 (938)
Q Consensus       578 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N-----------------  639 (938)
                      ++.+++|++|++++|++++.+|..++.+++|+.|++++|+++|.+| .+..+..+..+++..+                 
T Consensus       510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence            5555555555555555555555555555555555555555555555 4444433333322221                 


Q ss_pred             -----ccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccch
Q 036642          640 -----EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKA  714 (938)
Q Consensus       640 -----~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~  714 (938)
                           .+.+..+..+. .++.++.+++..|.+.|.+|..+..+++|+.||+++|+++|.+|..+++++.|          
T Consensus       590 ~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L----------  658 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL----------  658 (768)
T ss_dssp             SEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC----------
T ss_pred             cccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC----------
Confidence                 23455566665 67888889999999999999999999999999999999999999999988876          


Q ss_pred             hhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCc
Q 036642          715 IQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE  794 (938)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  794 (938)
                                                              +.|||++|+++|.||..++++++|+.||||+|+++|.||+
T Consensus       659 ----------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~  698 (768)
T 3rgz_A          659 ----------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ  698 (768)
T ss_dssp             ----------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred             ----------------------------------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence                                                    7899999999999999999999999999999999999999


Q ss_pred             cccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCc-cccc
Q 036642          795 SIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNN-LTGK  839 (938)
Q Consensus       795 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~  839 (938)
                      .++++++|++||+|+|+++|.||.. ..+..+....+.+|+ |+|.
T Consensus       699 ~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          699 AMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             GGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             HHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            9999999999999999999999976 344555666677885 6764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-59  Score=568.73  Aligned_cols=590  Identities=21%  Similarity=0.209  Sum_probs=359.7

Q ss_pred             CCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEE
Q 036642          142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKL  221 (938)
Q Consensus       142 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L  221 (938)
                      +++++|++++|.+++..+..|+++++|++|++++|.+....+..|.++++|++|++++|.++.++.  ..+.++++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--KTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--TTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--hhhccCCCCCEE
Confidence            344444444444444444444444444444444444444433344444444444444444443321  234455555555


Q ss_pred             EcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCcccc--CCCCCCEEECcCC
Q 036642          222 RLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQ--NLTSLKHLLLDSN  299 (938)
Q Consensus       222 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n  299 (938)
                      ++++|+++++++..|+++++|++|++++|.+.+.. +..+.++++|++|++++|.+++..+..+.  .+++|++|++++|
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            55555555555555666666666666666655543 45555566666666666666554444432  3456666666666


Q ss_pred             cCCCccchhhhcCCCCCEEEccCCcCCchhhHhhh---ccCCCCeeecCCCcCccchhhHHHhhhcccc-cCccEEEccC
Q 036642          300 RFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA---SLCNLRSVMLSCVKLSQEISEIFDIFSGCVS-SGLEILVLRG  375 (938)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~~L~~L~l~~  375 (938)
                      .+++..|..+..+++|+.|+++++.+.+.....+.   ..++|+.|++++|.+.+..+..    +..+. ++|+.|++++
T Consensus       182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~----~~~l~~~~L~~L~Ls~  257 (680)
T 1ziw_A          182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT----FLGLKWTNLTMLDLSY  257 (680)
T ss_dssp             CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT----TGGGGGSCCCEEECTT
T ss_pred             cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH----hhccCcCCCCEEECCC
Confidence            66666666666666666666666655433322221   2244555555555554444432    11111 1355555555


Q ss_pred             CcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCc
Q 036642          376 SSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPS  455 (938)
Q Consensus       376 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~  455 (938)
                      |.+.+..+..++.+++|++|++++|++.+..|..+..+++|++|++++|...+...              .    ..+|.
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--------------~----~~lp~  319 (680)
T 1ziw_A          258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS--------------L----ASLPK  319 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------------------------CCE
T ss_pred             CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc--------------c----ccccc
Confidence            55555444455555555555555555555444455555555555554433221000              0    00111


Q ss_pred             ccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCcE
Q 036642          456 WLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIE  534 (938)
Q Consensus       456 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~  534 (938)
                                           ++...+..+++|++|++++|.+++..+ .+..+++|++|++++|.+...          
T Consensus       320 ---------------------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~----------  368 (680)
T 1ziw_A          320 ---------------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR----------  368 (680)
T ss_dssp             ---------------------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC----------
T ss_pred             ---------------------cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh----------
Confidence                                 011112233444444444444444333 244444444444444433211          


Q ss_pred             EEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCC-cccCCCCCCcEEEc
Q 036642          535 LDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHL  613 (938)
Q Consensus       535 L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L  613 (938)
                                 ........-...++|+.|++++|++++..|..+..+++|+.|++++|.+++.+| ..+..+++|++|++
T Consensus       369 -----------~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          369 -----------TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             -----------EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             -----------hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence                       000000000113578888888888888888888888888999999888887666 67888888999999


Q ss_pred             cccccccccc-ccccCcCCcEEECCCCccC--CCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccc
Q 036642          614 RKNNLSGTIH-SLKNCTALLTLDVGENEFV--ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL  690 (938)
Q Consensus       614 ~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  690 (938)
                      ++|++++..+ .+..+++|+.|++++|.+.  +.+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  516 (680)
T 1ziw_A          438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL  516 (680)
T ss_dssp             CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence            9998887777 8888889999999988876  56777776 789999999999999988888899999999999999998


Q ss_pred             ccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCch
Q 036642          691 SGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPL  770 (938)
Q Consensus       691 ~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~  770 (938)
                      ++..+..+..-                                          .......++.|+.|+|++|+++ .+|.
T Consensus       517 ~~~~~~~~~~~------------------------------------------~~~~~~~l~~L~~L~L~~N~l~-~i~~  553 (680)
T 1ziw_A          517 ARLWKHANPGG------------------------------------------PIYFLKGLSHLHILNLESNGFD-EIPV  553 (680)
T ss_dssp             GGGGSTTSTTS------------------------------------------CCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cccchhhccCC------------------------------------------cchhhcCCCCCCEEECCCCCCC-CCCH
Confidence            85433221100                                          0001122345689999999999 5665


Q ss_pred             -hccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcccc-CCCCCCeEeCcCCcccccCCC
Q 036642          771 -EVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS-SLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       771 -~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~  842 (938)
                       .++++++|+.|+|++|++++..|..|.++++|+.|||++|++++..|..+. .+++|+++++++|++.|.|+.
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence             589999999999999999987777889999999999999999998888887 789999999999999999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.7e-58  Score=553.50  Aligned_cols=578  Identities=22%  Similarity=0.242  Sum_probs=420.3

Q ss_pred             ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642          107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL  186 (938)
Q Consensus       107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  186 (938)
                      .++|..+.  +++++|+|++|.++++ .+..++++++|++|++++|.+++..|..|+++++|++|++++|.+.......|
T Consensus        17 ~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~   93 (680)
T 1ziw_A           17 TQVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF   93 (680)
T ss_dssp             SSCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence            35676665  6899999999999975 56679999999999999999999999999999999999999999998888889


Q ss_pred             CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccc--cCC
Q 036642          187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWV--FGL  264 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l  264 (938)
                      .++++|++|++++|.++.++.  ..+.++++|++|++++|.+++.++..+.++++|++|++++|.+++.. +..+  ..+
T Consensus        94 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~  170 (680)
T 1ziw_A           94 AFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFAN  170 (680)
T ss_dssp             TTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTT
T ss_pred             ccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhcccc
Confidence            999999999999999987753  56889999999999999999999999999999999999999998754 5544  356


Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhh---cCCCCCEEEccCCcCCchhhHhhhccCC--C
Q 036642          265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLY---RFNRLESLGVSNNSLQGRVIRSMASLCN--L  339 (938)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L  339 (938)
                      ++|++|++++|.+++..|..+..+++|+.|+++++.+.+.....+.   ..++|++|++++|.+.+..+..+..++.  |
T Consensus       171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L  250 (680)
T 1ziw_A          171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL  250 (680)
T ss_dssp             CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred             ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence            8999999999999999999999999999999999987643332221   3589999999999999999999988865  9


Q ss_pred             CeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccc-----cc----cc
Q 036642          340 RSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPI-----PF----SL  410 (938)
Q Consensus       340 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~----~l  410 (938)
                      +.|++++|.+.+..+.    .++.++ +|++|++++|.+.+..|..+..+++|++|++++|...+.+     |.    .+
T Consensus       251 ~~L~Ls~n~l~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~  325 (680)
T 1ziw_A          251 TMLDLSYNNLNVVGND----SFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF  325 (680)
T ss_dssp             CEEECTTSCCCEECTT----TTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred             CEEECCCCCcCccCcc----cccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence            9999999999988776    455566 9999999999999999999999999999999987655422     22    45


Q ss_pred             cCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccc-cchhHhhc--CcC
Q 036642          411 GHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS-IPNIFWSS--ASQ  487 (938)
Q Consensus       411 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~--l~~  487 (938)
                      ..+++|++|++++|.+++                       ..+..+..+++|++|++++|.+... ++...+..  .++
T Consensus       326 ~~l~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~  382 (680)
T 1ziw_A          326 QWLKCLEHLNMEDNDIPG-----------------------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP  382 (680)
T ss_dssp             TTCTTCCEEECCSCCBCC-----------------------CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred             ccCCCCCEEECCCCccCC-----------------------CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence            566666666666666555                       3455566777777777777764321 22211111  124


Q ss_pred             ccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeecc
Q 036642          488 IYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLR  566 (938)
Q Consensus       488 L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls  566 (938)
                      |+.|++++|++++..+ .+..+++|++|++++|.+.+.+|.                        ..+..+++|++|+++
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~~l~~L~~L~Ls  438 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG------------------------QEWRGLENIFEIYLS  438 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS------------------------GGGTTCTTCCEEECC
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc------------------------ccccCcccccEEecC
Confidence            4444444444444333 233333333333333332221110                        122334444444444


Q ss_pred             CccCCCccchhhhcCCCCCEEEcCCCccc--ccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCC
Q 036642          567 GNFLQGELTDCWMNYQNLMILDLSNNKFT--GNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVE  643 (938)
Q Consensus       567 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~  643 (938)
                      +|++++..+..+..+++|+.|++++|.+.  +.+|..+..+++|+.|++++|++++.++ .+.+                
T Consensus       439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------------  502 (680)
T 1ziw_A          439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG----------------  502 (680)
T ss_dssp             SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT----------------
T ss_pred             CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc----------------
Confidence            44444444444444444555554444443  3344444444444444444444444333 3444                


Q ss_pred             CCChhHhhhcCcccEEeeCCCccccc--------CCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchh
Q 036642          644 NIPTWIGERFSRMVVLILRSNKFHSL--------LPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAI  715 (938)
Q Consensus       644 ~~p~~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~  715 (938)
                               +++|++|++++|++++.        .+..+..+++|+.|++++|+++...+..|.++++|           
T Consensus       503 ---------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-----------  562 (680)
T 1ziw_A          503 ---------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL-----------  562 (680)
T ss_dssp             ---------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred             ---------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc-----------
Confidence                     45555555555554432        22347788999999999999984333456666655           


Q ss_pred             hhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcc
Q 036642          716 QYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPES  795 (938)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  795 (938)
                                                             +.|||++|++++..|..+.++++|+.|+|++|++++..|..
T Consensus       563 ---------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          563 ---------------------------------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred             ---------------------------------------ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence                                                   78899999999666666789999999999999999988888


Q ss_pred             cc-ccCCCCEEECCCCcccccCC
Q 036642          796 IG-AMRSLESIDFSLNQLSGEIP  817 (938)
Q Consensus       796 ~~-~l~~L~~LdLs~N~l~~~ip  817 (938)
                      ++ .+++|+.|++++|++.+..+
T Consensus       604 ~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          604 FGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             HHHHHTTCSEEECTTCCCCBCCC
T ss_pred             hcccccccCEEEccCCCcccCCc
Confidence            88 89999999999999998755

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.2e-55  Score=520.27  Aligned_cols=532  Identities=21%  Similarity=0.214  Sum_probs=315.3

Q ss_pred             ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642          107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL  186 (938)
Q Consensus       107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  186 (938)
                      .++|..+..  ++++|||++|.++++ .|..++++++|++|+|++|++.+..|..|+++++|++|++++|++....+..|
T Consensus        25 ~~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           25 NEIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL  101 (606)
T ss_dssp             SSCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred             ccCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence            356655544  677777777777754 46667777777777777777777677777777777777777777666555555


Q ss_pred             CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642          187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ  266 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  266 (938)
                      .++++|++|++++|.++.                          +.+..++++++|++|++++|.+.+...+. +..+++
T Consensus       102 ~~l~~L~~L~L~~n~i~~--------------------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~  154 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISS--------------------------IDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEK  154 (606)
T ss_dssp             SSCTTCCEEECTTSCCSC--------------------------GGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTT
T ss_pred             cccccccEeeccccCccc--------------------------CCcchhccCCcccEEECCCCcccccCccc-ccCCcc
Confidence            555555555555555444                          43444555555555555555555432122 223555


Q ss_pred             CCEEEccCCcccCCCCccccCCCCCC--EEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeec
Q 036642          267 LVFLDLRRNNFQGPIPEGLQNLTSLK--HLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML  344 (938)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  344 (938)
                      |++|++++|.+++..|..++.+++|+  +|++++|.+++..|..+. ..+|++|++++|.   ..+..+..+.+++...+
T Consensus       155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l  230 (606)
T 3t6q_A          155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSL  230 (606)
T ss_dssp             CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEE
T ss_pred             cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhhe
Confidence            66666666665555555566666666  566666666654444433 3456666666664   23444444444333322


Q ss_pred             CCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCC--CccEEEccCCeecccccccccCCCCCcEEEcc
Q 036642          345 SCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFK--NLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS  422 (938)
Q Consensus       345 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  422 (938)
                      ....+.+                +....+.        +..+..+.  +|++|++++|.+++..+..|..+++|++|+++
T Consensus       231 ~~~~~~~----------------~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  286 (606)
T 3t6q_A          231 WLGTFED----------------MDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT  286 (606)
T ss_dssp             ECCCCTT----------------SCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred             echhhcc----------------ccccccC--------hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence            2211110                0000000        11111111  56666666666666555556666666666666


Q ss_pred             CccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccC
Q 036642          423 YNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI  502 (938)
Q Consensus       423 ~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  502 (938)
                      +|.++.+                        |..+..+++|++|++++|.+++..|..                      
T Consensus       287 ~n~l~~l------------------------p~~l~~l~~L~~L~l~~n~l~~~~~~~----------------------  320 (606)
T 3t6q_A          287 ATHLSEL------------------------PSGLVGLSTLKKLVLSANKFENLCQIS----------------------  320 (606)
T ss_dssp             TSCCSCC------------------------CSSCCSCTTCCEEECTTCCCSBGGGGC----------------------
T ss_pred             CCccCCC------------------------ChhhcccccCCEEECccCCcCcCchhh----------------------
Confidence            6665542                        333444455555555555444322221                      


Q ss_pred             CCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccch-hhhcC
Q 036642          503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTD-CWMNY  581 (938)
Q Consensus       503 ~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~-~~~~l  581 (938)
                        +..                                                 +++|++|++++|.+.+.+|. .+..+
T Consensus       321 --~~~-------------------------------------------------l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          321 --ASN-------------------------------------------------FPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             --GGG-------------------------------------------------CTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             --hhc-------------------------------------------------cCcCCEEECCCCCcccccchhhhhcc
Confidence              122                                                 22233333333333322221 23344


Q ss_pred             CCCCEEEcCCCcccccC--CcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccE
Q 036642          582 QNLMILDLSNNKFTGNL--PISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVV  658 (938)
Q Consensus       582 ~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~  658 (938)
                      ++|++|++++|.+++..  |..+..+++|++|++++|++.+..+ .+..+++|++|++++|++.+..|...+..+++|++
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  429 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV  429 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence            44444444444444332  3444445555555555555544444 44555555555555555554444432235666666


Q ss_pred             EeeCCCcccccCCccccCCCccCeeeccccccccccc---hhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccc
Q 036642          659 LILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP---RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED  735 (938)
Q Consensus       659 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (938)
                      |++++|++++..|..+..+++|+.|++++|++++..+   ..+..+++                                
T Consensus       430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~--------------------------------  477 (606)
T 3t6q_A          430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR--------------------------------  477 (606)
T ss_dssp             EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT--------------------------------
T ss_pred             EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC--------------------------------
Confidence            6666666666667777777888888888887775322   33444433                                


Q ss_pred             eeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642          736 ALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE  815 (938)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  815 (938)
                                        |+.|++++|++++.+|..++.+++|+.|+|++|++++.+|+.++++++| .||+++|++++.
T Consensus       478 ------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~  538 (606)
T 3t6q_A          478 ------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII  538 (606)
T ss_dssp             ------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred             ------------------ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence                              3788999999998888999999999999999999999999999999999 999999999998


Q ss_pred             CCccccCCCCCCeEeCcCCcccccCCCCC
Q 036642          816 IPQSMSSLTYLNHLNLSNNNLTGKIPSST  844 (938)
Q Consensus       816 ip~~l~~l~~L~~L~ls~N~l~g~ip~~~  844 (938)
                      .|..+..+++|+++++++|++.|.++..+
T Consensus       539 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  567 (606)
T 3t6q_A          539 LPSLLPILSQQRTINLRQNPLDCTCSNIY  567 (606)
T ss_dssp             CGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred             CHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence            88889999999999999999999888543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2e-54  Score=533.81  Aligned_cols=245  Identities=21%  Similarity=0.248  Sum_probs=163.6

Q ss_pred             CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642          558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG  637 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls  637 (938)
                      ++|++|++++|++++..+..|.++++|+.|++++|.+++ ++    .+++|+.|++++|+++..+..   ..+++.|+++
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls  409 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVTLPKI---NLTANLIHLS  409 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCCCCCC---CTTCCEEECC
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCccccccc---ccccceeecc
Confidence            344444444444444444445555555555555555542 11    245566666666665532211   3456666666


Q ss_pred             CCccCCCCChhHhhhcCcccEEeeCCCcccccCCc-cccCCCccCeeecccccccccc-----chhhhcchhhhhccccc
Q 036642          638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK-GLCDLAFLQIVDLADNNLSGEV-----PRCIHNLRAMVTLNSHA  711 (938)
Q Consensus       638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~l~~~~  711 (938)
                      +|++.+.-.......+++|++|++++|++++..+. .+..+++|+.|++++|.+++..     |..|..+          
T Consensus       410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l----------  479 (844)
T 3j0a_A          410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL----------  479 (844)
T ss_dssp             SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB----------
T ss_pred             cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc----------
Confidence            66665532222222577777888888877765433 3455788888899888887332     2333333          


Q ss_pred             cchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCccc
Q 036642          712 GKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGR  791 (938)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~  791 (938)
                                                              +.|+.|||++|++++.+|..+..+++|+.|+|++|++++.
T Consensus       480 ----------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  519 (844)
T 3j0a_A          480 ----------------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL  519 (844)
T ss_dssp             ----------------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred             ----------------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence                                                    3347889999999988888899999999999999999987


Q ss_pred             CCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCC-CCCCCCCCCCCC
Q 036642          792 IPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNCS  869 (938)
Q Consensus       792 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c~  869 (938)
                      .|..+.  ++|+.|||++|++++.+|..+.   +|+++++++|++.|.|+..+..+++    ..++ .+||.+....|.
T Consensus       520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~~~~----~~~~~~~~~~~~~~~C~  589 (844)
T 3j0a_A          520 SHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWL----NHTNVTIAGPPADIYCV  589 (844)
T ss_dssp             CCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHHHHH----HHTTTTTCCCGGGCCCS
T ss_pred             Chhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccHHHHHHH----HhcCcccccccccCccC
Confidence            777776  8999999999999999998765   6889999999999999864433322    2334 566666555674

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-53  Score=509.60  Aligned_cols=533  Identities=18%  Similarity=0.150  Sum_probs=365.5

Q ss_pred             ccceeeCCC---------CCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccc
Q 036642           68 WAGVVCDNV---------TGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFI  138 (938)
Q Consensus        68 w~gv~c~~~---------~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l  138 (938)
                      +..|.|...         ...++.+++++.               .+.+..|..|.++++|++|+|++|.++++ .|..+
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n---------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~   77 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFN---------------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTF   77 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTC---------------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTT
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCC---------------ccCcCChhHhccCccceEEECCCCcccee-Chhhc
Confidence            445777542         236788898883               66666678999999999999999999975 68889


Q ss_pred             cCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCC
Q 036642          139 CSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSL  218 (938)
Q Consensus       139 ~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L  218 (938)
                      +++++|++|+|++|++++..|..|+++++|++|++++|.+....+..+.++++|++|++++|.++.++.  ..+..+++|
T Consensus        78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L  155 (606)
T 3t6q_A           78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL--PKGFPTEKL  155 (606)
T ss_dssp             TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC--CTTCCCTTC
T ss_pred             cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc--ccccCCccc
Confidence            999999999999999999999999999999999999999998877778888888888887777766421  112224555


Q ss_pred             cEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCC--EEEccCCcccCCCCccccCCCCCCEEEC
Q 036642          219 VKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLV--FLDLRRNNFQGPIPEGLQNLTSLKHLLL  296 (938)
Q Consensus       219 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (938)
                      ++|++++|.++++.+.                         .+..+++|+  .|++++|.+++..|..+. ..+|++|++
T Consensus       156 ~~L~L~~n~l~~~~~~-------------------------~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l  209 (606)
T 3t6q_A          156 KVLDFQNNAIHYLSKE-------------------------DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNF  209 (606)
T ss_dssp             CEEECCSSCCCEECHH-------------------------HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEEC
T ss_pred             CEEEcccCcccccChh-------------------------hhhhhcccceeEEecCCCccCccChhHhh-hcccccccc
Confidence            5555555555444444                         444555555  555555555544444333 346666776


Q ss_pred             cCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCC
Q 036642          297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGS  376 (938)
Q Consensus       297 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  376 (938)
                      ++|.   .++..+..+.+++...+.-..+.           .+....+....+.+.           ...+++.+++++|
T Consensus       210 ~~~~---~~~~~~~~l~~~~l~~l~~~~~~-----------~~~~~~i~~~~~~~l-----------~~~~L~~L~l~~n  264 (606)
T 3t6q_A          210 GGTQ---NLLVIFKGLKNSTIQSLWLGTFE-----------DMDDEDISPAVFEGL-----------CEMSVESINLQKH  264 (606)
T ss_dssp             TTCS---CHHHHHHHTTTCEEEEEECCCCT-----------TSCCCCCCGGGGGGG-----------GGSEEEEEECTTC
T ss_pred             CCch---hHHHHhhhccccchhheechhhc-----------cccccccChhHhchh-----------hcCceeEEEeecC
Confidence            6665   34555555555544444332221           111111221111111           1116888889999


Q ss_pred             cCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcc
Q 036642          377 SVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSW  456 (938)
Q Consensus       377 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~  456 (938)
                      .+++..+..++.+++|++|++++|+++ .+|..+..+++|++|++++|.+++.                       .|..
T Consensus       265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~-----------------------~~~~  320 (606)
T 3t6q_A          265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL-----------------------CQIS  320 (606)
T ss_dssp             CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG-----------------------GGGC
T ss_pred             ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC-----------------------chhh
Confidence            888888888999999999999999998 6788899999999999999988763                       4556


Q ss_pred             cCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEE
Q 036642          457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELD  536 (938)
Q Consensus       457 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~  536 (938)
                      +..+++|++|++++|.+.+.+|...+..+++|++|++++|.                                       
T Consensus       321 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~---------------------------------------  361 (606)
T 3t6q_A          321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD---------------------------------------  361 (606)
T ss_dssp             GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC---------------------------------------
T ss_pred             hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc---------------------------------------
Confidence            77778888888888877655554433333333333333333                                       


Q ss_pred             ccCCccccccchhhhhhhccCCCcceeeccCccCCCcc--chhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcc
Q 036642          537 FSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGEL--TDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR  614 (938)
Q Consensus       537 ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  614 (938)
                                                       +++..  +..+..+++|++|++++|++.+..|..+..+++|+.|+++
T Consensus       362 ---------------------------------l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          362 ---------------------------------IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             ---------------------------------CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred             ---------------------------------cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence                                             22221  2334444444455555554444444445555555555555


Q ss_pred             ccccccccc--ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCccccc---CCccccCCCccCeeeccccc
Q 036642          615 KNNLSGTIH--SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSL---LPKGLCDLAFLQIVDLADNN  689 (938)
Q Consensus       615 ~n~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~Ls~N~  689 (938)
                      +|++++..+  .+.++++|++|++++|.+.+..|..+. .+++|++|++++|++++.   .+..+..+++|+.|++++|+
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            555544433  245555555555555555554554444 466666666666666552   33567788889999999999


Q ss_pred             cccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCc
Q 036642          690 LSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP  769 (938)
Q Consensus       690 l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip  769 (938)
                      +++..|..+..+++|                                                  +.|||++|++++.+|
T Consensus       488 l~~~~~~~~~~l~~L--------------------------------------------------~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMM--------------------------------------------------NHVDLSHNRLTSSSI  517 (606)
T ss_dssp             CCEECTTTTTTCTTC--------------------------------------------------CEEECCSSCCCGGGG
T ss_pred             cCccChhhhccccCC--------------------------------------------------CEEECCCCccCcCCh
Confidence            888888887776665                                                  688999999999999


Q ss_pred             hhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCC
Q 036642          770 LEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP  817 (938)
Q Consensus       770 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip  817 (938)
                      ..+.+++.| .|+|++|++++.+|+.++.+++|+.||+++|++.+..+
T Consensus       518 ~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          518 EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999 99999999999999999999999999999999998665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.4e-53  Score=509.72  Aligned_cols=545  Identities=20%  Similarity=0.175  Sum_probs=343.2

Q ss_pred             EEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCC
Q 036642          121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV  200 (938)
Q Consensus       121 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  200 (938)
                      +++.+++.++  .+|..+.  +++++|++++|.+++..+..|+++++|++|++++|.+....+..|.++++|++|++++|
T Consensus        15 ~~~c~~~~l~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           15 TYQCMDQKLS--KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             EEECTTSCCS--SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ceEccCCCcc--cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            3444444444  2343332  44555555555555444445555555555555555555544445555555555555555


Q ss_pred             CCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCC
Q 036642          201 NLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGP  280 (938)
Q Consensus       201 ~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  280 (938)
                      .++...  +..+.++++|++|++++|.++++++..++++++|++|++++|.+.+..+|..++++++|++|++++|.+++.
T Consensus        91 ~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           91 PIQSFS--PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCCCC--TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             cccccC--hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            554432  245566666777777777777777667788888888888888877644477888888888888888888877


Q ss_pred             CCccccCCCCCC----EEECcCCcCCCccchhhhcCCCCCEEEccCCcCC-chhhHhhhccCCCCeeecCCCcCccchhh
Q 036642          281 IPEGLQNLTSLK----HLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ-GRVIRSMASLCNLRSVMLSCVKLSQEISE  355 (938)
Q Consensus       281 ~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  355 (938)
                      .|..++.+++|+    +|++++|.+++..+..+.. .+|++|++++|.+. +..+..+.+++.|+.+++..+.+.+..  
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--  245 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--  245 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--
T ss_pred             ChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCC--
Confidence            777676665544    7888888887655554444 48888888888887 456677888888887777654433210  


Q ss_pred             HHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEc-cCCeecccccccccCCCCCcEEEccCccCCCCCCCCC
Q 036642          356 IFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL-SNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI  434 (938)
Q Consensus       356 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  434 (938)
                                 .++.       +....+..+..+ .++.+++ ..+.+.+.+|. +..+++|++|++++|.+..++    
T Consensus       246 -----------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~----  301 (606)
T 3vq2_A          246 -----------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE----  301 (606)
T ss_dssp             -----------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC----
T ss_pred             -----------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchhhh----
Confidence                       0000       001111112222 3555666 55666666665 667777777777777665432    


Q ss_pred             CccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCcee
Q 036642          435 PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL  514 (938)
Q Consensus       435 ~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L  514 (938)
                                           .+..+++|++|++++|.+ +.+|..   .+++|+.|++++|...+              
T Consensus       302 ---------------------~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~--------------  342 (606)
T 3vq2_A          302 ---------------------DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSI--------------  342 (606)
T ss_dssp             ---------------------CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCE--------------
T ss_pred             ---------------------hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCcc--------------
Confidence                                 233444444444444444 233311   23333333333331111              


Q ss_pred             ecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCc--cchhhhcCCCCCEEEcCCC
Q 036642          515 SLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE--LTDCWMNYQNLMILDLSNN  592 (938)
Q Consensus       515 ~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n  592 (938)
                               ..                           .+..+++|++|++++|++++.  +|..+..+++|++|++++|
T Consensus       343 ---------~~---------------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          343 ---------SF---------------------------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             ---------EC---------------------------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred             ---------ch---------------------------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence                     00                           112345555555555555543  2455555555555555555


Q ss_pred             cccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCc
Q 036642          593 KFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK  672 (938)
Q Consensus       593 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  672 (938)
                      .+++ +|..+..+++|+.|++++|++                       .+..|...+..+++|++|++++|++++..|.
T Consensus       387 ~l~~-~~~~~~~l~~L~~L~l~~n~l-----------------------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          387 GAII-MSANFMGLEELQHLDFQHSTL-----------------------KRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             SEEE-ECCCCTTCTTCCEEECTTSEE-----------------------ESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             cccc-chhhccCCCCCCeeECCCCcc-----------------------CCccChhhhhccccCCEEECcCCCCCccchh
Confidence            5553 334455555555555555544                       4444422222566667777777777777777


Q ss_pred             cccCCCccCeeeccccccccc-cchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhc
Q 036642          673 GLCDLAFLQIVDLADNNLSGE-VPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCIL  751 (938)
Q Consensus       673 ~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (938)
                      .+..+++|+.|++++|++++. +|..++.+++|                                               
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-----------------------------------------------  475 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-----------------------------------------------  475 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----------------------------------------------
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCC-----------------------------------------------
Confidence            777888888888888888873 67777766655                                               


Q ss_pred             cceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCC-CCCeEe
Q 036642          752 NLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT-YLNHLN  830 (938)
Q Consensus       752 ~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~  830 (938)
                         +.|++++|++++.+|..++++++|+.|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|++|+
T Consensus       476 ---~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          476 ---TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             ---CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred             ---CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence               67889999999888889999999999999999999999999999999999999999999 6888899987 599999


Q ss_pred             CcCCcccccCCCCCcCCC
Q 036642          831 LSNNNLTGKIPSSTQLQS  848 (938)
Q Consensus       831 ls~N~l~g~ip~~~~~~~  848 (938)
                      +++|++.|.+|..+..++
T Consensus       552 l~~N~~~c~c~~~~~~~~  569 (606)
T 3vq2_A          552 LTNNSVACICEHQKFLQW  569 (606)
T ss_dssp             CCSCCCCCSSTTHHHHTT
T ss_pred             ccCCCcccCCccHHHHHH
Confidence            999999999886543333

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.3e-51  Score=489.07  Aligned_cols=529  Identities=20%  Similarity=0.168  Sum_probs=409.3

Q ss_pred             ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642          107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL  186 (938)
Q Consensus       107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  186 (938)
                      ..+|..+.  +++++|+|++|.+++. .+..+.++++|++|++++|.+++..|..|+++++|++|++++|.+....+..|
T Consensus        24 ~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  100 (606)
T 3vq2_A           24 SKVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF  100 (606)
T ss_dssp             SSCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred             ccCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence            45666555  6899999999999964 56689999999999999999998889999999999999999999999989999


Q ss_pred             CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCC-cccccCCCCCCEEECCCCCCCCccCcccccCCC
Q 036642          187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP-PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLI  265 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  265 (938)
                      .++++|++|++++|.++..+.  ..++++++|++|++++|.+++.. |..++++++|++|++++|.+++.. +..++.++
T Consensus       101 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~  177 (606)
T 3vq2_A          101 SGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-VNDLQFLR  177 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC-TTTTHHHH
T ss_pred             CCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC-hhhhhhhh
Confidence            999999999999999988754  35889999999999999999754 789999999999999999998754 66666665


Q ss_pred             CC----CEEEccCCcccCCCCccccCCCCCCEEECcCCcCC-CccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCC
Q 036642          266 QL----VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN-SSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR  340 (938)
Q Consensus       266 ~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  340 (938)
                      +|    ++|++++|.+++..+..+.. .+|++|++++|.++ +..|..+.+++.|+.+++..+.+.+.        ..+.
T Consensus       178 ~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--------~~l~  248 (606)
T 3vq2_A          178 ENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--------RNLE  248 (606)
T ss_dssp             HCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS--------CCCS
T ss_pred             ccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccC--------Cccc
Confidence            55    48999999999665555544 49999999999987 46788899999999999876654321        1111


Q ss_pred             eeecCCCcCccchhhHHHhhhcccccCccEEEc-cCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEE
Q 036642          341 SVMLSCVKLSQEISEIFDIFSGCVSSGLEILVL-RGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFI  419 (938)
Q Consensus       341 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  419 (938)
                      .+       ....+.    .+..  -.++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|
T Consensus       249 ~~-------~~~~~~----~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L  312 (606)
T 3vq2_A          249 IF-------EPSIME----GLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSL  312 (606)
T ss_dssp             CC-------CGGGGT----TGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEE
T ss_pred             cc-------ChHHhh----hhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEE
Confidence            11       000110    1111  15667777 66777777777 8899999999999999974 55 88889999999


Q ss_pred             EccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEeccccccc
Q 036642          420 DLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH  499 (938)
Q Consensus       420 ~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  499 (938)
                      ++++|.+..+                        |. + .+++|++|++++|...+.++   +..+++|++|++++|.++
T Consensus       313 ~l~~n~l~~l------------------------p~-~-~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          313 SIIRCQLKQF------------------------PT-L-DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             EEESCCCSSC------------------------CC-C-CCSSCCEEEEESCSSCEECC---CCCCTTCCEEECCSSCEE
T ss_pred             EcccccCccc------------------------cc-C-CCCccceeeccCCcCccchh---hccCCCCCEEECcCCccC
Confidence            9999988543                        42 3 66777777777775543332   123444444444444443


Q ss_pred             ccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh
Q 036642          500 GQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM  579 (938)
Q Consensus       500 ~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~  579 (938)
                      +..                                              .....+..+++|++|++++|.+++ +|..+.
T Consensus       364 ~~~----------------------------------------------~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~  396 (606)
T 3vq2_A          364 FSG----------------------------------------------CCSYSDLGTNSLRHLDLSFNGAII-MSANFM  396 (606)
T ss_dssp             EEE----------------------------------------------ECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred             CCc----------------------------------------------chhhhhccCCcccEeECCCCcccc-chhhcc
Confidence            210                                              001334568899999999999985 668899


Q ss_pred             cCCCCCEEEcCCCcccccCC-cccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCccc
Q 036642          580 NYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMV  657 (938)
Q Consensus       580 ~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~  657 (938)
                      .+++|+.|++++|++.+..| ..+..+++|++|++++|.+++.++ .+.++++|++|++++|++.+.             
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------  463 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN-------------  463 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-------------
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc-------------
Confidence            99999999999999998877 678888888888888888877665 555555555555555554331             


Q ss_pred             EEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhccccee
Q 036642          658 VLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDAL  737 (938)
Q Consensus       658 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (938)
                                 .+|..+..+++|+.|++++|++++..|..+..+++|                                 
T Consensus       464 -----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------  499 (606)
T 3vq2_A          464 -----------TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL---------------------------------  499 (606)
T ss_dssp             -----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------
T ss_pred             -----------chHHhhccCCCCCEEECCCCcCCccChhhhcccccC---------------------------------
Confidence                       256667777888888888888887777777766655                                 


Q ss_pred             eeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccC-CCCEEECCCCcccccC
Q 036642          738 VVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMR-SLESIDFSLNQLSGEI  816 (938)
Q Consensus       738 ~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~-~L~~LdLs~N~l~~~i  816 (938)
                                       +.|++++|++++.+|..++++++|+.|+|++|+++ .+|..+..++ +|+.|++++|++.+..
T Consensus       500 -----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          500 -----------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             -----------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             -----------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence                             67888888888888999999999999999999999 7888899986 6999999999999865


Q ss_pred             C
Q 036642          817 P  817 (938)
Q Consensus       817 p  817 (938)
                      +
T Consensus       562 ~  562 (606)
T 3vq2_A          562 E  562 (606)
T ss_dssp             T
T ss_pred             c
Confidence            5

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.1e-52  Score=500.89  Aligned_cols=513  Identities=18%  Similarity=0.207  Sum_probs=346.8

Q ss_pred             CcHHHHHHHHHhhhcCCCCCC--------CCCCCCCCCCCccc---cceeeCCCCCcEEEEecCCCCCccCCccCCCCCC
Q 036642           34 CLESERRALLRFKQDLQDPSN--------RLASWIGYEDCCAW---AGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPR  102 (938)
Q Consensus        34 ~~~~~~~~ll~~k~~~~~~~~--------~l~~W~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~  102 (938)
                      ....|++||.++|+++.++..        ..++|+.+++||.|   .||+|+. .|||++|+|++               
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~---------------   90 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEG---------------   90 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTT---------------
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecC---------------
Confidence            346799999999999865422        24589866899999   9999986 49999999998               


Q ss_pred             cccCccccCCccCCCCCCEEeCCCCCCC------C-----CcccccccCCCCCcEEecCCCcCCCCCCcCCCC-CCcccE
Q 036642          103 SMLVGKVNPSLLDLKHLSYLDLSYNDFQ------G-----VQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGN-LSNLQY  170 (938)
Q Consensus       103 ~~~~g~l~~~l~~l~~L~~L~Ls~n~l~------~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-L~~L~~  170 (938)
                      ..+.|.+|++++++++|++|||++|.+.      +     ..+|...  +.+|+ ++++++.+.+.+|..+.. +.++..
T Consensus        91 ~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~  167 (636)
T 4eco_A           91 FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCIN  167 (636)
T ss_dssp             SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred             cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhh
Confidence            4889999999999999999999999762      1     0234333  45667 788888888777766653 223333


Q ss_pred             EECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCC
Q 036642          171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYN  250 (938)
Q Consensus       171 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  250 (938)
                      +++....+...                                ....++.+.+.                      ...|
T Consensus       168 ~~l~~~~~~~~--------------------------------~~~~l~~l~l~----------------------~~~n  193 (636)
T 4eco_A          168 SDPQQKSIKKS--------------------------------SRITLKDTQIG----------------------QLSN  193 (636)
T ss_dssp             HCTTSCCCCCC--------------------------------CCCCCCTTTTT----------------------CCSC
T ss_pred             cCccccccccc--------------------------------cccchhhhhhc----------------------cccC
Confidence            33322211100                                00011111111                      0123


Q ss_pred             CCCCccCcccccCCCCCCEEEccCCcccCC-----------------CCcccc--CCCCCCEEECcCCcCCCccchhhhc
Q 036642          251 QFDNSFVPNWVFGLIQLVFLDLRRNNFQGP-----------------IPEGLQ--NLTSLKHLLLDSNRFNSSIPNWLYR  311 (938)
Q Consensus       251 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~  311 (938)
                      ++++ + |..++++++|++|+|++|.+++.                 +|+.++  ++++|++|++++|.+.+.+|..+++
T Consensus       194 ~l~~-i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          194 NITF-V-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             EEEE-E-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCcc-C-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            3333 2 44444444444444444444443                 666666  6777777777777766667766777


Q ss_pred             CCCCCEEEccCCc-CCc-hhhHhhhcc------CCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccc
Q 036642          312 FNRLESLGVSNNS-LQG-RVIRSMASL------CNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLT  383 (938)
Q Consensus       312 l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  383 (938)
                      +++|++|++++|+ +++ .+|..++.+      ++|+.|++++|.++ .+|..  ..++.++ +|++|++++|.+.|.+|
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~--~~l~~l~-~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE--TSLQKMK-KLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH--HHHTTCT-TCCEEECCSCCCEEECC
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch--hhhccCC-CCCEEeCcCCcCccchh
Confidence            7777777777776 666 666666665      67777777777776 34430  0223344 67777777777777777


Q ss_pred             cccCCCCCccEEEccCCeecccccccccCCCC-CcEEEccCccCCCCCCCCCCcc--ccceeecccccCCCCCCcccC--
Q 036642          384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLST-LQFIDLSYNELNGMNDNWIPPF--QLATLGLRHCHLGSRFPSWLH--  458 (938)
Q Consensus       384 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~--~L~~L~L~~~~l~~~~p~~l~--  458 (938)
                       .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++.+|..+....  +|+.|++++|.+.+..|..+.  
T Consensus       348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence             7888889999999999988 77888888888 9999999999887776555433  677777877777777777776  


Q ss_pred             -----CCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCc
Q 036642          459 -----SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLI  533 (938)
Q Consensus       459 -----~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~  533 (938)
                           .+++|++|++++|.++ .+|..++..+++|+.|++++|+++...+......                        
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~------------------------  480 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE------------------------  480 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET------------------------
T ss_pred             ccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc------------------------
Confidence                 6667777777777777 5666665666666666666666652221111000                        


Q ss_pred             EEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh--cCCCCCEEEcCCCcccccCCcccCCCCCCcEE
Q 036642          534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM--NYQNLMILDLSNNKFTGNLPISLGSLISLQSL  611 (938)
Q Consensus       534 ~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  611 (938)
                                       ...+.++++|++|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|
T Consensus       481 -----------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L  541 (636)
T 4eco_A          481 -----------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF  541 (636)
T ss_dssp             -----------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred             -----------------cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence                             001123457888888888888 5777775  78888888888888886 78888888888888


Q ss_pred             EcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccc
Q 036642          612 HLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS  691 (938)
Q Consensus       612 ~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  691 (938)
                      +|++|+                 ++++|++.+.+|.++. .+++|++|++++|++ +.+|..+.  ++|+.|++++|++.
T Consensus       542 ~Ls~N~-----------------~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          542 GIRNQR-----------------DAQGNRTLREWPEGIT-LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             ECCSCB-----------------CTTCCBCCCCCCTTGG-GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             ECCCCc-----------------ccccCcccccChHHHh-cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            887765                 4567777777777776 577888888888887 55676655  68888888888776


Q ss_pred             c
Q 036642          692 G  692 (938)
Q Consensus       692 ~  692 (938)
                      .
T Consensus       601 ~  601 (636)
T 4eco_A          601 S  601 (636)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-50  Score=498.57  Aligned_cols=529  Identities=22%  Similarity=0.223  Sum_probs=322.1

Q ss_pred             ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCC-CcCCCCCCcccEEECCCCcccccCccc
Q 036642          107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMI-PPQLGNLSNLQYLDLSWNFLYVENLWW  185 (938)
Q Consensus       107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~L~~L~~L~Ls~n~i~~~~~~~  185 (938)
                      ..+|.   -.++|++|||++|.++++ .|..+.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+....+..
T Consensus        17 ~~vP~---lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           17 TQVPQ---VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             SCCCS---SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCC---CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            34555   346889999999998864 6778889999999999998665555 778899999999999999888888888


Q ss_pred             cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc-ccccCCCCCCEEECCCCCCCCccCcccccCC
Q 036642          186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP-LAIANFSTLTTLDLLYNQFDNSFVPNWVFGL  264 (938)
Q Consensus       186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  264 (938)
                      |.++++|++|++++|.+++.......+..+++|++|++++|.+++..+ ..|+++++|++|++++|.+++.. +..+..+
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~-~~~l~~l  171 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPL  171 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC-SGGGHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC-HHHcccc
Confidence            888888888888888877532112236677777777777777776654 45677777777777777766544 5555555


Q ss_pred             --CCCCEEEccCCcccCCCCccccCCCC------CCEEECcCCcCCCccchhhhcC---CCCCEEEccCCcCCchhhHhh
Q 036642          265 --IQLVFLDLRRNNFQGPIPEGLQNLTS------LKHLLLDSNRFNSSIPNWLYRF---NRLESLGVSNNSLQGRVIRSM  333 (938)
Q Consensus       265 --~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~~~~l  333 (938)
                        ++|+.|++++|.+.+..|..+..+++      |++|++++|.+++..+..+...   .+++.+.++.+.+..      
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~------  245 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA------  245 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC------
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc------
Confidence              66777777777766666655555444      6666666666655555544432   345555554332211      


Q ss_pred             hccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCC
Q 036642          334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL  413 (938)
Q Consensus       334 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  413 (938)
                               .+..+.+.+.....   +.+...++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+
T Consensus       246 ---------~~~~~~l~~~~~~~---f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  313 (844)
T 3j0a_A          246 ---------GFGFHNIKDPDQNT---FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL  313 (844)
T ss_dssp             ---------SSSCSSSTTGGGTT---TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred             ---------cccccccCCCChhh---hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence                     01112222211111   001111245555555555555555555555555555555555555444455555


Q ss_pred             CCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEec
Q 036642          414 STLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDL  493 (938)
Q Consensus       414 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  493 (938)
                      ++|++|++++|.+++                       ..|..+..+++|+.|++++|.+.+..+.              
T Consensus       314 ~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~--------------  356 (844)
T 3j0a_A          314 DNLQVLNLSYNLLGE-----------------------LYSSNFYGLPKVAYIDLQKNHIAIIQDQ--------------  356 (844)
T ss_dssp             SSCCEEEEESCCCSC-----------------------CCSCSCSSCTTCCEEECCSCCCCCCCSS--------------
T ss_pred             CCCCEEECCCCCCCc-----------------------cCHHHhcCCCCCCEEECCCCCCCccChh--------------
Confidence            555555555554443                       2334444444455555444444322111              


Q ss_pred             ccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCc
Q 036642          494 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE  573 (938)
Q Consensus       494 s~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~  573 (938)
                                .+..+++|++|++++|.+++.                              ..+++|+.|++++|+++ .
T Consensus       357 ----------~~~~l~~L~~L~Ls~N~l~~i------------------------------~~~~~L~~L~l~~N~l~-~  395 (844)
T 3j0a_A          357 ----------TFKFLEKLQTLDLRDNALTTI------------------------------HFIPSIPDIFLSGNKLV-T  395 (844)
T ss_dssp             ----------CSCSCCCCCEEEEETCCSCCC------------------------------SSCCSCSEEEEESCCCC-C
T ss_pred             ----------hhcCCCCCCEEECCCCCCCcc------------------------------cCCCCcchhccCCCCcc-c
Confidence                      223333333333333333211                              01344555555555555 2


Q ss_pred             cchhhhcCCCCCEEEcCCCcccccCC-cccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhh
Q 036642          574 LTDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGER  652 (938)
Q Consensus       574 ~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~  652 (938)
                      +|..   ..+++.|++++|++++... ..+..+++|+.|+|++|++++..+                       ......
T Consensus       396 l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~~~~  449 (844)
T 3j0a_A          396 LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG-----------------------DQTPSE  449 (844)
T ss_dssp             CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS-----------------------SSSSCS
T ss_pred             cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc-----------------------cccccc
Confidence            2322   3456666666666654211 123355556666666655554332                       211113


Q ss_pred             cCcccEEeeCCCccc-----ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCc
Q 036642          653 FSRMVVLILRSNKFH-----SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAP  727 (938)
Q Consensus       653 l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  727 (938)
                      +++|+.|++++|.++     +..+..|..+++|+.|+|++|++++..|..|..+++|                       
T Consensus       450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----------------------  506 (844)
T 3j0a_A          450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-----------------------  506 (844)
T ss_dssp             CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-----------------------
T ss_pred             CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-----------------------
Confidence            455555555555554     3345677888999999999999998888877777665                       


Q ss_pred             chhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEEC
Q 036642          728 STAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDF  807 (938)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdL  807 (938)
                                                 +.|||++|++++..|..+.  ++|+.|+|++|++++.+|+.|.   +|+.|++
T Consensus       507 ---------------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l  554 (844)
T 3j0a_A          507 ---------------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDI  554 (844)
T ss_dssp             ---------------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEE
T ss_pred             ---------------------------heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEe
Confidence                                       7889999999976666555  8999999999999999998764   7899999


Q ss_pred             CCCcccccCC
Q 036642          808 SLNQLSGEIP  817 (938)
Q Consensus       808 s~N~l~~~ip  817 (938)
                      ++|++.+..+
T Consensus       555 ~~Np~~C~c~  564 (844)
T 3j0a_A          555 THNKFICECE  564 (844)
T ss_dssp             EEECCCCSSS
T ss_pred             cCCCcccccc
Confidence            9999998654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.3e-50  Score=485.73  Aligned_cols=521  Identities=18%  Similarity=0.200  Sum_probs=274.3

Q ss_pred             CCCcHHHHHHHHHhhhcCCCCCCCCCCCCCCC-----CC--ccc------------cceeeCCCCCcEEEEecCCCCCcc
Q 036642           32 VGCLESERRALLRFKQDLQDPSNRLASWIGYE-----DC--CAW------------AGVVCDNVTGHIVELNLRNPFTYC   92 (938)
Q Consensus        32 ~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~L~~~~~~~   92 (938)
                      .++..+|++||++||+++.+|     +|+.+.     +|  |.|            .||+|+. .+||+.|+|++     
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~-----  332 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG-----  332 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred             cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence            345678999999999999876     675422     45  999            9999986 79999999998     


Q ss_pred             CCccCCCCCCcccCccccCCccCCCCCCEEeC-CCCCCCCCcccccccCC-CCCc-----EE---------ec-CCCcC-
Q 036642           93 DLSQSKANPRSMLVGKVNPSLLDLKHLSYLDL-SYNDFQGVQIPRFICSM-GNLR-----YL---------NL-SYTQF-  154 (938)
Q Consensus        93 ~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~L-s~n~l~~~~~p~~l~~l-~~L~-----~L---------~L-s~n~l-  154 (938)
                                ..+.|.+|+++++|++|++||| ++|.+.+. .|...... ..+.     .+         +. ....+ 
T Consensus       333 ----------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          333 ----------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             ----------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             ----------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence                      4899999999999999999999 88877653 22110000 0000     00         00 00000 


Q ss_pred             ----------CCCCCcCCCCCCcccEEECCC--CcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEE
Q 036642          155 ----------VGMIPPQLGNLSNLQYLDLSW--NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR  222 (938)
Q Consensus       155 ----------~~~~p~~~~~L~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  222 (938)
                                ....+........++.+.+..  |.+.. -+..+.++++|++|+|++|.+++..                
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~----------------  464 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDN----------------  464 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGG----------------
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCc----------------
Confidence                      000111111222233333332  44444 2333444444444444444443310                


Q ss_pred             cCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCccccc--CCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCc
Q 036642          223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF--GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNR  300 (938)
Q Consensus       223 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  300 (938)
                              ++. .+.        ..+.|...+.+ |..++  ++++|++|+|++|.+.+.+|..++++++|++|++++|+
T Consensus       465 --------i~~-~~~--------~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          465 --------IAV-DWE--------DANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             --------BSS-SCS--------CTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             --------ccc-ccc--------ccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence                    000 000        00001111112 44433  44555555555555555555555555555555555554


Q ss_pred             -CCC-ccchhhhcCC-------CCCEEEccCCcCCchhhH--hhhccCCCCeeecCCCcCccchhhHHHhhhcccccCcc
Q 036642          301 -FNS-SIPNWLYRFN-------RLESLGVSNNSLQGRVIR--SMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLE  369 (938)
Q Consensus       301 -l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~  369 (938)
                       +++ .+|..++.++       +|++|++++|.++ .+|.  .++++++|+.|++++|.+                    
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l--------------------  585 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV--------------------  585 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC--------------------
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc--------------------
Confidence             444 4444444333       5555555555554 3333  444444444444444433                    


Q ss_pred             EEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCC-CcEEEccCccCCCCCCCCCCcc--ccceeeccc
Q 036642          370 ILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLST-LQFIDLSYNELNGMNDNWIPPF--QLATLGLRH  446 (938)
Q Consensus       370 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~--~L~~L~L~~  446 (938)
                               + .+| .++.+++|+.|++++|+++ .+|..+..+++ |++|++++|.++.+|..+....  +|+.|++++
T Consensus       586 ---------~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~  653 (876)
T 4ecn_A          586 ---------R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY  653 (876)
T ss_dssp             ---------C-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCS
T ss_pred             ---------c-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcC
Confidence                     3 333 4555666666666666666 55555666666 6666666666665544333322  255555555


Q ss_pred             ccCCCCCCcc---cC--CCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccC
Q 036642          447 CHLGSRFPSW---LH--SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSF  521 (938)
Q Consensus       447 ~~l~~~~p~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l  521 (938)
                      |.+.+.+|..   +.  .+++|+.|++++|.++ .+|..++..+++|+.|++++|+++...+.+....            
T Consensus       654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~------------  720 (876)
T 4ecn_A          654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPK------------  720 (876)
T ss_dssp             SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT------------
T ss_pred             CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccc------------
Confidence            5554444322   12  2346777777777777 6666666666677777777776663222211100            


Q ss_pred             ccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh--cCCCCCEEEcCCCcccccCC
Q 036642          522 SGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM--NYQNLMILDLSNNKFTGNLP  599 (938)
Q Consensus       522 ~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p  599 (938)
                                                   ...+.++++|++|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|
T Consensus       721 -----------------------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp  769 (876)
T 4ecn_A          721 -----------------------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FP  769 (876)
T ss_dssp             -----------------------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred             -----------------------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cc
Confidence                                         000123446666777777666 5566665  67777777777777775 56


Q ss_pred             cccCCCCCCcEEEccc------cccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCc
Q 036642          600 ISLGSLISLQSLHLRK------NNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK  672 (938)
Q Consensus       600 ~~~~~l~~L~~L~L~~------n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  672 (938)
                      ..+..+++|+.|+|++      |++.+.+| .+.++++|+.|+|++|++ +.+|..+.   ++|+.|+|++|++....+.
T Consensus       770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~  845 (876)
T 4ecn_A          770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVT  845 (876)
T ss_dssp             CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECG
T ss_pred             hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChH
Confidence            6677777777777765      44444444 455555555555555555 44444432   3455555555555444444


Q ss_pred             cccCCCccCeeecccccc
Q 036642          673 GLCDLAFLQIVDLADNNL  690 (938)
Q Consensus       673 ~l~~l~~L~~L~Ls~N~l  690 (938)
                      .++....+..+.+.+|+.
T Consensus       846 ~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          846 SVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             GGHHHHHTTCCEEECCTT
T ss_pred             HccccccchheeecCCCc
Confidence            444333444444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9e-48  Score=456.25  Aligned_cols=501  Identities=21%  Similarity=0.203  Sum_probs=281.8

Q ss_pred             CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeC
Q 036642          118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL  197 (938)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  197 (938)
                      ++++|||++|.++++ .+..+.++++|++|++++|++++..|..|+++++|++|++++|++....+..            
T Consensus        29 ~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------   95 (570)
T 2z63_A           29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA------------   95 (570)
T ss_dssp             SCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT------------
T ss_pred             cccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh------------
Confidence            455555555555542 2334555555555555555555544555555555555555555554444333            


Q ss_pred             CCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcc
Q 036642          198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNF  277 (938)
Q Consensus       198 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  277 (938)
                                    +.++++|++|++++|+++++++..++++++|++|++++|.+.+..+|..+.++++|++|++++|.+
T Consensus        96 --------------~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A           96 --------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             --------------TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             --------------hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence                          445555555555555555555555666777777777777666533366677777777777777777


Q ss_pred             cCCCCccccCCCCC----CEEECcCCcCCCccchhhhcCCCCCEEEccCCcCC-chhhHhhhccCCCCeeecCCCcCccc
Q 036642          278 QGPIPEGLQNLTSL----KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQ-GRVIRSMASLCNLRSVMLSCVKLSQE  352 (938)
Q Consensus       278 ~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~  352 (938)
                      ++..+..++.+++|    ++|++++|.+++..|..+... +|++|++++|... ...+..+..++.++...+....+...
T Consensus       162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  240 (570)
T 2z63_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  240 (570)
T ss_dssp             CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred             ceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence            76666666666666    677777777776666665544 6777777777443 23455566666665554432221110


Q ss_pred             hhhHHHhhhcccccCccEEEccCCcCccccccccCCCC--CccEEEccCC-eecccccccccCCCCCcEEEccCccCCCC
Q 036642          353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFK--NLYYLDLSNN-SIVGPIPFSLGHLSTLQFIDLSYNELNGM  429 (938)
Q Consensus       353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  429 (938)
                      .             .++  .+.        ...+..++  .++.++++++ .+.+..|..+..+++|++|++++|.++++
T Consensus       241 ~-------------~l~--~~~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l  297 (570)
T 2z63_A          241 G-------------NLE--KFD--------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV  297 (570)
T ss_dssp             S-------------SCE--ECC--------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSC
T ss_pred             h-------------hhh--hcc--------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhh
Confidence            0             111  001        11111111  2455566655 55556666666666666666666665543


Q ss_pred             CCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccc
Q 036642          430 NDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAA  509 (938)
Q Consensus       430 ~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~  509 (938)
                                              |.++..+ +|++|++++|.+. .+|.   ..+                        
T Consensus       298 ------------------------~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l------------------------  324 (570)
T 2z63_A          298 ------------------------KDFSYNF-GWQHLELVNCKFG-QFPT---LKL------------------------  324 (570)
T ss_dssp             ------------------------CBCCSCC-CCSEEEEESCBCS-SCCB---CBC------------------------
T ss_pred             ------------------------hhhhccC-CccEEeeccCccc-ccCc---ccc------------------------
Confidence                                    2223333 4444444444333 1111   011                        


Q ss_pred             cCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEc
Q 036642          510 QLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDL  589 (938)
Q Consensus       510 ~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L  589 (938)
                                                                      ++|++|++++|.+.+..+.  ..+++|++|++
T Consensus       325 ------------------------------------------------~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l  354 (570)
T 2z63_A          325 ------------------------------------------------KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDL  354 (570)
T ss_dssp             ------------------------------------------------SSCCEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred             ------------------------------------------------cccCEEeCcCCcccccccc--ccCCCCCEEeC
Confidence                                                            2222222222222222211  22333333333


Q ss_pred             CCCcccccC--CcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCccc
Q 036642          590 SNNKFTGNL--PISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFH  667 (938)
Q Consensus       590 s~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~  667 (938)
                      ++|++++..  |..+..+++|++|++++|.+++.++.+..+++|++|++++|.+.+..|.                    
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------  414 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--------------------  414 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS--------------------
T ss_pred             cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch--------------------
Confidence            333333221  3333444444444444444444333344444444444444444433332                    


Q ss_pred             ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhh
Q 036642          668 SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEY  747 (938)
Q Consensus       668 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (938)
                          ..+..+++|+.|++++|.+.+..|..+..+++|                                           
T Consensus       415 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------------  447 (570)
T 2z63_A          415 ----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-------------------------------------------  447 (570)
T ss_dssp             ----CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-------------------------------------------
T ss_pred             ----hhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-------------------------------------------
Confidence                123334444444555554444444444444333                                           


Q ss_pred             hhhccceeEEEeecCccC-ccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCC
Q 036642          748 KCILNLVRIIDFSKNNFS-GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYL  826 (938)
Q Consensus       748 ~~~~~~l~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  826 (938)
                             +.|++++|+++ +.+|..++.+++|+.|+|++|++++..|..|+.+++|++|++++|++++..|..+.++++|
T Consensus       448 -------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  520 (570)
T 2z63_A          448 -------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL  520 (570)
T ss_dssp             -------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             -------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence                   45556666665 4677778888999999999999998889999999999999999999999888889999999


Q ss_pred             CeEeCcCCcccccCCCCCcC
Q 036642          827 NHLNLSNNNLTGKIPSSTQL  846 (938)
Q Consensus       827 ~~L~ls~N~l~g~ip~~~~~  846 (938)
                      ++|++++|+++|.+|....+
T Consensus       521 ~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          521 QKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CEEECCSSCBCCCTTTTHHH
T ss_pred             cEEEecCCcccCCCcchHHH
Confidence            99999999999999976554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-46  Score=445.99  Aligned_cols=509  Identities=20%  Similarity=0.179  Sum_probs=344.2

Q ss_pred             CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642          192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD  271 (938)
Q Consensus       192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  271 (938)
                      .+.++.++.+++.++.   .+  .+++++|++++|+++++++..|.++++|++|++++|++++.. +..+.++++|++|+
T Consensus         9 ~~~~~c~~~~l~~ip~---~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~   82 (570)
T 2z63_A            9 NITYQCMELNFYKIPD---NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLI   82 (570)
T ss_dssp             TTEEECCSSCCSSCCS---SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC-TTTTTTCTTCCEEE
T ss_pred             CcEEEeCCCCccccCC---Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC-cccccCchhCCEEe
Confidence            3456666666666543   11  246888888888888887777888888888888888777643 56677778888888


Q ss_pred             ccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCc-hhhHhhhccCCCCeeecCCCcCc
Q 036642          272 LRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG-RVIRSMASLCNLRSVMLSCVKLS  350 (938)
Q Consensus       272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~  350 (938)
                      +++|.+++..|..+..+++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|+.|++++|.+.
T Consensus        83 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             CcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            88887777666777777888888888887776555567777777777777777765 34666777777777777777666


Q ss_pred             cchhhHHHhhhcccccCc----cEEEccCCcCccccccccCCCCCccEEEccCCeecc-cccccccCCCCCcEEEccCcc
Q 036642          351 QEISEIFDIFSGCVSSGL----EILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG-PIPFSLGHLSTLQFIDLSYNE  425 (938)
Q Consensus       351 ~~~~~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~  425 (938)
                      +..+..+    +.+. +|    +.+++++|.+.+..+..+... +|++|++++|.... .++..+..++.++...+....
T Consensus       163 ~~~~~~~----~~l~-~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          163 SIYCTDL----RVLH-QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             EECGGGG----HHHH-TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred             eecHHHc----cchh-ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence            5544421    1111 22    444444444444444443333 34444444442211 122233333333333332211


Q ss_pred             CCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCc
Q 036642          426 LNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNL  505 (938)
Q Consensus       426 l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l  505 (938)
                      +...                               ..++           .++...+..+++                  
T Consensus       237 ~~~~-------------------------------~~l~-----------~~~~~~~~~l~~------------------  256 (570)
T 2z63_A          237 FRNE-------------------------------GNLE-----------KFDKSALEGLCN------------------  256 (570)
T ss_dssp             CCCC-------------------------------SSCE-----------ECCTTTTGGGGG------------------
T ss_pred             ccCc-------------------------------hhhh-----------hcchhhhccccc------------------
Confidence            1110                               0000           000000000110                  


Q ss_pred             cccccCceeecCCc-cCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCC
Q 036642          506 TNAAQLEVLSLGSN-SFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL  584 (938)
Q Consensus       506 ~~~~~L~~L~L~~n-~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  584 (938)
                        + .++.++++++ .+.+..|                         ..+..+++|++|++++|.++ .+|..+..+ +|
T Consensus       257 --l-~l~~l~l~~~~~~~~~~~-------------------------~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L  306 (570)
T 2z63_A          257 --L-TIEEFRLAYLDYYLDDII-------------------------DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GW  306 (570)
T ss_dssp             --S-EEEEEEEEETTEEESCST-------------------------TTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CC
T ss_pred             --c-chhhhhhhcchhhhhhch-------------------------hhhcCcCcccEEEecCccch-hhhhhhccC-Cc
Confidence              0 1233333333 2222221                         22344677777777777777 466667777 88


Q ss_pred             CEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCC--ChhHhhhcCcccEEeeC
Q 036642          585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENI--PTWIGERFSRMVVLILR  662 (938)
Q Consensus       585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~~l~~L~~L~L~  662 (938)
                      ++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. ..+++|++|++++|++.+..  |..+. .+++|++|+++
T Consensus       307 ~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~  381 (570)
T 2z63_A          307 QHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLS  381 (570)
T ss_dssp             SEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECC
T ss_pred             cEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECC
Confidence            88888888887 5554  4678888888888887765554 67888888888888877643  56665 78999999999


Q ss_pred             CCcccccCCccccCCCccCeeeccccccccccc-hhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeec
Q 036642          663 SNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMK  741 (938)
Q Consensus       663 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  741 (938)
                      +|++.+..+. +..+++|+.|++++|.+.+..| ..+.++++|                                     
T Consensus       382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------------------------------------  423 (570)
T 2z63_A          382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-------------------------------------  423 (570)
T ss_dssp             SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-------------------------------------
T ss_pred             CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC-------------------------------------
Confidence            9999886555 9999999999999999997766 345555544                                     


Q ss_pred             CcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCc-ccCCccccccCCCCEEECCCCcccccCCccc
Q 036642          742 GRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT-GRIPESIGAMRSLESIDFSLNQLSGEIPQSM  820 (938)
Q Consensus       742 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l  820 (938)
                                   +.|++++|++++.+|..+.++++|+.|++++|.++ +.+|..++.+++|++||+++|++++..|..+
T Consensus       424 -------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~  490 (570)
T 2z63_A          424 -------------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF  490 (570)
T ss_dssp             -------------CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             -------------CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence                         78999999999999999999999999999999998 6899999999999999999999999999999


Q ss_pred             cCCCCCCeEeCcCCcccccCCCC-CcCCCcCCCCcCCCC
Q 036642          821 SSLTYLNHLNLSNNNLTGKIPSS-TQLQSFDASSYAGND  858 (938)
Q Consensus       821 ~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~  858 (938)
                      .++++|++|++++|++++..|.. ..+..+....+.+|.
T Consensus       491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            99999999999999999876643 445555555566663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.5e-45  Score=440.24  Aligned_cols=533  Identities=22%  Similarity=0.212  Sum_probs=329.6

Q ss_pred             cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccC
Q 036642          108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP  187 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~  187 (938)
                      ++|+.+.  +.+++|||++|.|+++ .|..|.++++|++|+|++|+|++..|.+|++|++|++|+|++|++....+.+  
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~--  119 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--  119 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG--
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH--
Confidence            4565553  3678888888888753 3456777788888888888777666677777777777777777666554444  


Q ss_pred             CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCC
Q 036642          188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL  267 (938)
Q Consensus       188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  267 (938)
                                              |.++++|++|++++|+++++++..|+++++|++|++++|.+++...|..++.+++|
T Consensus       120 ------------------------f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  175 (635)
T 4g8a_A          120 ------------------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  175 (635)
T ss_dssp             ------------------------GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             ------------------------hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence                                    44555555555555666666666677777777777777777665446677777777


Q ss_pred             CEEEccCCcccCCCCccccCCCC----CCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchh-hHhhhccCCCCee
Q 036642          268 VFLDLRRNNFQGPIPEGLQNLTS----LKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV-IRSMASLCNLRSV  342 (938)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L  342 (938)
                      ++|++++|++++..+..+..+.+    ...++++.|.+....+. ......++.+++.+|...... +..+..+..++..
T Consensus       176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~  254 (635)
T 4g8a_A          176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH  254 (635)
T ss_dssp             CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred             hhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence            78888777777766666655443    34677777777643333 333345566777766554322 2334444444433


Q ss_pred             ecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEcc
Q 036642          343 MLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS  422 (938)
Q Consensus       343 ~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  422 (938)
                      .+..+.....                       ..+.                        ......+..+..+...++.
T Consensus       255 ~l~~~~~~~~-----------------------~~l~------------------------~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          255 RLVLGEFRNE-----------------------GNLE------------------------KFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             EEEEECCTTS-----------------------CCCS------------------------CCCTTTTGGGGGSEEEEEE
T ss_pred             cccccccccc-----------------------cccc------------------------cccccccccccchhhhhhh
Confidence            3322111100                       0000                        0011112222222222222


Q ss_pred             CccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccC
Q 036642          423 YNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI  502 (938)
Q Consensus       423 ~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  502 (938)
                      .+......                    ...+..+....+++.+++.++.+....                         
T Consensus       288 ~~~~~~~~--------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~-------------------------  322 (635)
T 4g8a_A          288 LAYLDYYL--------------------DGIIDLFNCLTNVSSFSLVSVTIERVK-------------------------  322 (635)
T ss_dssp             EECCCSCE--------------------EECTTTTGGGTTCSEEEEESCEEEECG-------------------------
T ss_pred             hhhhcccc--------------------cchhhhhhhhccccccccccccccccc-------------------------
Confidence            22111100                    001111222333444444444433211                         


Q ss_pred             CCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCC
Q 036642          503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQ  582 (938)
Q Consensus       503 ~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~  582 (938)
                       .+.....++.|++.+|.+.+..+..+..                            |+.+++++|......  ....++
T Consensus       323 -~~~~~~~L~~L~l~~~~~~~~~~~~l~~----------------------------L~~l~l~~n~~~~~~--~~~~l~  371 (635)
T 4g8a_A          323 -DFSYNFGWQHLELVNCKFGQFPTLKLKS----------------------------LKRLTFTSNKGGNAF--SEVDLP  371 (635)
T ss_dssp             -GGGSCCCCSEEEEESCEESSCCCCBCTT----------------------------CCEEEEESCCSCCBC--CCCBCT
T ss_pred             -ccccchhhhhhhcccccccCcCcccchh----------------------------hhhcccccccCCCCc--cccccc
Confidence             1122223334444444333322222233                            334444444333211  123445


Q ss_pred             CCCEEEcCCCccc--ccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEe
Q 036642          583 NLMILDLSNNKFT--GNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI  660 (938)
Q Consensus       583 ~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  660 (938)
                      +|+.|++++|.+.  +..+..+..+.+|+.+++..|......+.+..+++|+.++++.|+.....+...+..+++++.++
T Consensus       372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~  451 (635)
T 4g8a_A          372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  451 (635)
T ss_dssp             TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred             ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            5555555555553  23344445556666666666666554445666666777777766666655555555678888888


Q ss_pred             eCCCcccccCCccccCCCccCeeeccccccc-cccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeee
Q 036642          661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLS-GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV  739 (938)
Q Consensus       661 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (938)
                      ++.|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|                                   
T Consensus       452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-----------------------------------  496 (635)
T 4g8a_A          452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-----------------------------------  496 (635)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----------------------------------
T ss_pred             ccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-----------------------------------
Confidence            8888888888888888899999999998754 3466666666655                                   


Q ss_pred             ecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcc
Q 036642          740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS  819 (938)
Q Consensus       740 ~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~  819 (938)
                                     +.|||++|++++.+|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++..|..
T Consensus       497 ---------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          497 ---------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             ---------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred             ---------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence                           78999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC-CCCCeEeCcCCcccccCCCC
Q 036642          820 MSSL-TYLNHLNLSNNNLTGKIPSS  843 (938)
Q Consensus       820 l~~l-~~L~~L~ls~N~l~g~ip~~  843 (938)
                      +..+ ++|++|++++|+++|.|...
T Consensus       562 l~~l~~~L~~L~L~~Np~~C~C~~~  586 (635)
T 4g8a_A          562 LQHFPSSLAFLNLTQNDFACTCEHQ  586 (635)
T ss_dssp             TTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred             HHhhhCcCCEEEeeCCCCcccCCcH
Confidence            9998 68999999999999988743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.6e-45  Score=434.67  Aligned_cols=484  Identities=19%  Similarity=0.198  Sum_probs=294.7

Q ss_pred             CCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEE
Q 036642          240 STLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLG  319 (938)
Q Consensus       240 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  319 (938)
                      ++|++|++++|.+++.. +..+.++++|++|++++|.+++..|+.+..+++|++|++++|.+++..|..++++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            34555555555554332 44455555555555555555554455555555555555555555555555555555555555


Q ss_pred             ccCCcCCch-hhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEcc
Q 036642          320 VSNNSLQGR-VIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLS  398 (938)
Q Consensus       320 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  398 (938)
                      +++|.+++. .+..++++++|+.|++++|.+.+.++..   .+..++ +|++|++++|.+++..|..++.+++|++|+++
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhccc-ccCeeeccCCcccccChhhhhccccCceEecc
Confidence            555555542 3344555555555555555533333210   233333 66677777777777777778888888888888


Q ss_pred             CCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccc
Q 036642          399 NNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIP  478 (938)
Q Consensus       399 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  478 (938)
                      +|.+.......+..+++|++|++++|++++.+..                    .......+++|+.|++++|.+++..+
T Consensus       181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFS--------------------PLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC--------------------CCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             cCcccccchhhHhhcccccEEEccCCcccccccc--------------------ccchhhhhhcccceeccccccchhHH
Confidence            8887643333345688888888888888764210                    01112346778888888888876655


Q ss_pred             hhHh---hcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhc
Q 036642          479 NIFW---SSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAH  555 (938)
Q Consensus       479 ~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~  555 (938)
                      ..+.   ..+++|+.+++++|.+.+... +...             ....+..+++++.|++.++.+.....        
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~-------------~~~~~~~l~~L~~L~l~~~~i~~~~~--------  298 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGD-FNPS-------------ESDVVSELGKVETVTIRRLHIPQFYL--------  298 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSC-CCCC-------------TTTCCCCCTTCCEEEEESCBCSCGGG--------
T ss_pred             HHHHHHhhhhcccccccccccccccccc-cccc-------------chhhhhhhcccccccccccccchhhh--------
Confidence            4432   335566777777776654311 0000             00011113344444444443322100        


Q ss_pred             cCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCccc-CCCCCCcEEEccccccccccc----ccccCcC
Q 036642          556 ELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLSGTIH----SLKNCTA  630 (938)
Q Consensus       556 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~----~l~~l~~  630 (938)
                                     ...++..+...++|+.|++++|++. .+|..+ ..+++|++|++++|++++.++    .+..+++
T Consensus       299 ---------------~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~  362 (549)
T 2z81_A          299 ---------------FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS  362 (549)
T ss_dssp             ---------------SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred             ---------------cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence                           0011222233445555555555554 444443 345566666666666655432    2455666


Q ss_pred             CcEEECCCCccCCCCC-hhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccc
Q 036642          631 LLTLDVGENEFVENIP-TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNS  709 (938)
Q Consensus       631 L~~L~Ls~N~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~  709 (938)
                      |++|++++|++++..+ ......+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+.          
T Consensus       363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~----------  430 (549)
T 2z81_A          363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP----------  430 (549)
T ss_dssp             CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC----------
T ss_pred             CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc----------
Confidence            6666666666654211 122235777777777777777 36777777888888888888876 3333221          


Q ss_pred             cccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCc
Q 036642          710 HAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT  789 (938)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  789 (938)
                                                                +.|+.||+++|++++.+    +.+++|+.|+|++|+++
T Consensus       431 ------------------------------------------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~  464 (549)
T 2z81_A          431 ------------------------------------------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK  464 (549)
T ss_dssp             ------------------------------------------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred             ------------------------------------------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC
Confidence                                                      12478999999999743    57899999999999999


Q ss_pred             ccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcC
Q 036642          790 GRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQL  846 (938)
Q Consensus       790 ~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  846 (938)
                       .+|+ .+.+++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|....+
T Consensus       465 -~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l  519 (549)
T 2z81_A          465 -TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  519 (549)
T ss_dssp             -SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             -cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence             7887 578999999999999999999999999999999999999999999854333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.1e-45  Score=430.28  Aligned_cols=482  Identities=18%  Similarity=0.148  Sum_probs=302.0

Q ss_pred             EEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCC
Q 036642          121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV  200 (938)
Q Consensus       121 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  200 (938)
                      +.|.+++.++  .+|..+.  ++|++|++++|++++..|..|+++++|++|++++|++....+..|.++++|++|++++|
T Consensus         9 ~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   84 (549)
T 2z81_A            9 VCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN   84 (549)
T ss_dssp             EEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             eEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence            3466666666  3555443  56777777777777666667777777777777777777666666777777777777777


Q ss_pred             CCCCCcchhhhhCCCCCCcEEEcCCCCCCCC-CcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccC
Q 036642          201 NLSKASDWLRVTNTLPSLVKLRLSRCQLHHL-PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG  279 (938)
Q Consensus       201 ~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  279 (938)
                      .+++.+.  ..+.++++|++|++++|.++++ .+..++++++|++|++++|.+.+.+.+..+.++++|++|++++|.+++
T Consensus        85 ~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           85 HLSSLSS--SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CCCSCCH--HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             ccCccCH--HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            7666532  4567777777777777777764 345677788888888888875554434577778888888888888887


Q ss_pred             CCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchh---hHhhhccCCCCeeecCCCcCccchhhH
Q 036642          280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRV---IRSMASLCNLRSVMLSCVKLSQEISEI  356 (938)
Q Consensus       280 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~  356 (938)
                      ..|..+..+++|++|++++|.+....+..+..+++|++|++++|++++..   ......+++|+.|++++|.+.+..+..
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE  242 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred             cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence            77888888888888888888775433333356788888888888777642   122344667777777777777665554


Q ss_pred             HHhhhcccccCccEEEccCCcCcccc------ccccCCCCCccEEEccCCeeccc-----ccccccCCCCCcEEEccCcc
Q 036642          357 FDIFSGCVSSGLEILVLRGSSVSGHL------TYKLGQFKNLYYLDLSNNSIVGP-----IPFSLGHLSTLQFIDLSYNE  425 (938)
Q Consensus       357 ~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~  425 (938)
                      +........ +++.+++++|.+.+..      ...+..+++|+.|++.++.+...     ++..+...++|++|++++|.
T Consensus       243 l~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~  321 (549)
T 2z81_A          243 LLKLLRYIL-ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK  321 (549)
T ss_dssp             HHGGGGGCT-TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred             HHHHhhhhc-cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence            333333333 6666666666554421      11234455566666655544321     11112223455555555555


Q ss_pred             CCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchh--HhhcCcCccEEecccccccccCC
Q 036642          426 LNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNI--FWSSASQIYVLDLSFNQIHGQIP  503 (938)
Q Consensus       426 l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~  503 (938)
                      +..+|..+                       +..+++|++|++++|++++.+|..  .+..+++|+.|++++|++++..+
T Consensus       322 l~~ip~~~-----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  378 (549)
T 2z81_A          322 VFLVPCSF-----------------------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK  378 (549)
T ss_dssp             CCCCCHHH-----------------------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred             cccCCHHH-----------------------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence            54433322                       134555555555555555444321  12344555555555555544321


Q ss_pred             ---CccccccCceeecCCccCccCCCCC---CCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchh
Q 036642          504 ---NLTNAAQLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC  577 (938)
Q Consensus       504 ---~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~  577 (938)
                         .+..+++|++|++++|++++ +|..   +++|++|++++|++++. +..      -.++|++|++++|++++.+   
T Consensus       379 ~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l-~~~------~~~~L~~L~Ls~N~l~~~~---  447 (549)
T 2z81_A          379 TGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVV-KTC------IPQTLEVLDVSNNNLDSFS---  447 (549)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCC-CTT------SCTTCSEEECCSSCCSCCC---
T ss_pred             chhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcccc-cch------hcCCceEEECCCCChhhhc---
Confidence               24445555555555555553 2321   34566666666665431 111      1256778888888777643   


Q ss_pred             hhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCC
Q 036642          578 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIP  646 (938)
Q Consensus       578 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p  646 (938)
                       ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.++ .+..+++|+.|++++|++.+..|
T Consensus       448 -~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 -LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             -CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             -ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence             46778888888888887 5665 4568888888888888888777 68888888888888888888776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.2e-46  Score=442.63  Aligned_cols=451  Identities=17%  Similarity=0.242  Sum_probs=316.8

Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCC------C------ccchhhhcCCCCCEEEccCCcCCchhhHh
Q 036642          265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN------S------SIPNWLYRFNRLESLGVSNNSLQGRVIRS  332 (938)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~L~~n~l~~~~~~~  332 (938)
                      .+++.|+|++|.+.|.+|+.++++++|++|++++|.+.      +      .+|...  +..|+ +++++|.+.+.++..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            46777777777777777777777777777777777651      1      222222  22333 444444444443333


Q ss_pred             hhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEc--cCCeecccccccc
Q 036642          333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL--SNNSIVGPIPFSL  410 (938)
Q Consensus       333 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L--s~n~l~~~~~~~l  410 (938)
                      +..+.                            ..+..+++....+..      .....++.+.+  ..|++++ +|..+
T Consensus       158 ~~~~~----------------------------~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l  202 (636)
T 4eco_A          158 FSDLI----------------------------KDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAV  202 (636)
T ss_dssp             SCHHH----------------------------HHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGG
T ss_pred             HHHHH----------------------------HHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHH
Confidence            22110                            011111111111110      01112222222  2466666 66667


Q ss_pred             cCCCCCcEEEccCccCCC------------------CCCCCC--CccccceeecccccCCCCCCcccCCCCCCcEEEccC
Q 036642          411 GHLSTLQFIDLSYNELNG------------------MNDNWI--PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSY  470 (938)
Q Consensus       411 ~~l~~L~~L~Ls~n~l~~------------------~~~~~~--~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~  470 (938)
                      +++++|++|+|++|.+++                  +|..+.  ...+|++|++++|.+.+.+|..+.++++|++|++++
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            777777777777777766                  555555  556666666666666667888888888888888888


Q ss_pred             cc-ccc-ccchhHhh-----cCcCccEEecccccccccCC--CccccccCceeecCCccCccCCCCCCCCCcEEEccCCc
Q 036642          471 SG-ITG-SIPNIFWS-----SASQIYVLDLSFNQIHGQIP--NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNS  541 (938)
Q Consensus       471 n~-l~~-~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~--~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~  541 (938)
                      |+ +++ .+|..+..     .+++|+.|++++|+++..+.  .+..+++|++|++++|.+.|.+|               
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---------------  347 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---------------  347 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC---------------
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh---------------
Confidence            87 887 77776643     13677777777777773332  35566666666666655554444               


Q ss_pred             cccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCC-CCEEEcCCCcccccCCcccCCCC--CCcEEEcccccc
Q 036642          542 ISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQN-LMILDLSNNKFTGNLPISLGSLI--SLQSLHLRKNNL  618 (938)
Q Consensus       542 l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l  618 (938)
                                 .++.+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++  +|+.|++++|++
T Consensus       348 -----------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          348 -----------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             -----------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             -----------hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence                       2345677888888888888 77777888888 888888888888 7787777654  888888888888


Q ss_pred             ccccc-ccc-------cCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccc-cC-------CCccCe
Q 036642          619 SGTIH-SLK-------NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGL-CD-------LAFLQI  682 (938)
Q Consensus       619 ~~~~~-~l~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~-------l~~L~~  682 (938)
                      ++.+| .+.       .+++|++|++++|++. .+|..++..+++|++|++++|+++. +|... ..       +++|+.
T Consensus       415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~  492 (636)
T 4eco_A          415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTS  492 (636)
T ss_dssp             TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCE
T ss_pred             CCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccE
Confidence            88777 676       7788999999999988 5787777678999999999999984 55433 32       238999


Q ss_pred             eeccccccccccchhhh--cchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEee
Q 036642          683 VDLADNNLSGEVPRCIH--NLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS  760 (938)
Q Consensus       683 L~Ls~N~l~~~~p~~l~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  760 (938)
                      |++++|+++ .+|..+.  .+++|                                                  +.|+|+
T Consensus       493 L~Ls~N~l~-~lp~~~~~~~l~~L--------------------------------------------------~~L~Ls  521 (636)
T 4eco_A          493 IDLRFNKLT-KLSDDFRATTLPYL--------------------------------------------------VGIDLS  521 (636)
T ss_dssp             EECCSSCCC-BCCGGGSTTTCTTC--------------------------------------------------CEEECC
T ss_pred             EECcCCcCC-ccChhhhhccCCCc--------------------------------------------------CEEECC
Confidence            999999998 7887665  55554                                                  789999


Q ss_pred             cCccCccCchhccCccCCCEEeC------cCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642          761 KNNFSGKIPLEVTNLKALQSFNL------SNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN  834 (938)
Q Consensus       761 ~N~l~g~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  834 (938)
                      +|++++ +|..++++++|+.|+|      ++|++.+.+|+.++++++|++|||++|++ +.+|..+.  ++|++|++++|
T Consensus       522 ~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N  597 (636)
T 4eco_A          522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN  597 (636)
T ss_dssp             SSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred             CCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC
Confidence            999997 9999999999999999      56889999999999999999999999999 68898876  79999999999


Q ss_pred             cccc
Q 036642          835 NLTG  838 (938)
Q Consensus       835 ~l~g  838 (938)
                      ++..
T Consensus       598 ~l~~  601 (636)
T 4eco_A          598 PNIS  601 (636)
T ss_dssp             TTCE
T ss_pred             CCcc
Confidence            8875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-45  Score=429.36  Aligned_cols=460  Identities=18%  Similarity=0.217  Sum_probs=308.9

Q ss_pred             EEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCc
Q 036642          269 FLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVK  348 (938)
Q Consensus       269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  348 (938)
                      +|++++|.++ .+|..+.  ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|+++++|++|++++|+
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            4444444444 3444333  455555555555555444555555555555555555555555555555555555555555


Q ss_pred             CccchhhHHHhhhcccccCccEEEccCCcCcc-ccccccCCCCCccEEEccCCeecccccccccCCCCC--cEEEccCcc
Q 036642          349 LSQEISEIFDIFSGCVSSGLEILVLRGSSVSG-HLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTL--QFIDLSYNE  425 (938)
Q Consensus       349 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~Ls~n~  425 (938)
                      +++ +|.    .  .++ +|++|++++|.+++ .+|..++.+++|++|++++|.+++   ..+..+++|  ++|++++|.
T Consensus        81 l~~-lp~----~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           81 LVK-ISC----H--PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CCE-EEC----C--CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred             eee-cCc----c--ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence            542 222    1  122 55555555555554 345566667777777777776664   245555555  666666666


Q ss_pred             CCCCCCCCCCccccceeecccccCCCCCCcccCCCC-CCcEEEccCcccccccchhHhhcCcCccEEeccccc-------
Q 036642          426 LNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQK-HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ-------  497 (938)
Q Consensus       426 l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-------  497 (938)
                      +.+                     .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.       
T Consensus       150 l~~---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  208 (520)
T 2z7x_B          150 TYG---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY  208 (520)
T ss_dssp             TTT---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred             ccc---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence            511                     223444444433 233456666666666666555666677777777765       


Q ss_pred             ccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchh
Q 036642          498 IHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDC  577 (938)
Q Consensus       498 l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~  577 (938)
                      +.+.++.+..+++|+.|++++|.+                     ++..+....... ..++|++|++++|+++|.+|..
T Consensus       209 ~~~~~~~l~~l~~L~~L~l~~~~l---------------------~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~  266 (520)
T 2z7x_B          209 FLSILAKLQTNPKLSNLTLNNIET---------------------TWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFR  266 (520)
T ss_dssp             HHHHHHGGGGCTTCCEEEEEEEEE---------------------EHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCC
T ss_pred             eecchhhhccccchhhcccccccc---------------------CHHHHHHHHHHh-hhCcccEEEeecccccCccccc
Confidence            444444555555555555544443                     332222222211 2457888888888888888877


Q ss_pred             h-----hcCCCCCEEEcCCCcccccCC-cccCCC---CCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChh
Q 036642          578 W-----MNYQNLMILDLSNNKFTGNLP-ISLGSL---ISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTW  648 (938)
Q Consensus       578 ~-----~~l~~L~~L~Ls~n~l~~~~p-~~~~~l---~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~  648 (938)
                      +     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+.. ....+++|++|++++|++.+.+|.+
T Consensus       267 ~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~  343 (520)
T 2z7x_B          267 DFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFEN  343 (520)
T ss_dssp             CCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             hhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhh
Confidence            7     7788888888888888  455 444444   67888888888875432 2367888888888888888888877


Q ss_pred             HhhhcCcccEEeeCCCcccc--cCCccccCCCccCeeeccccccccccchh-hhcchhhhhccccccchhhhhhhhccCC
Q 036642          649 IGERFSRMVVLILRSNKFHS--LLPKGLCDLAFLQIVDLADNNLSGEVPRC-IHNLRAMVTLNSHAGKAIQYQFLLYASR  725 (938)
Q Consensus       649 ~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~~~~~~~~~~~~~~~~~~  725 (938)
                      +. .+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+|.. +..+++                      
T Consensus       344 ~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~----------------------  400 (520)
T 2z7x_B          344 CG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS----------------------  400 (520)
T ss_dssp             CC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT----------------------
T ss_pred             hc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc----------------------
Confidence            76 78889999999998887  56678889999999999999998767754 444443                      


Q ss_pred             CcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEE
Q 036642          726 APSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESI  805 (938)
Q Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L  805 (938)
                                                  |+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|++|
T Consensus       401 ----------------------------L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          401 ----------------------------LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             ----------------------------CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             ----------------------------CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence                                        37899999999998888776  78999999999999 899988899999999


Q ss_pred             ECCCCcccccCCcc-ccCCCCCCeEeCcCCcccccCCCC
Q 036642          806 DFSLNQLSGEIPQS-MSSLTYLNHLNLSNNNLTGKIPSS  843 (938)
Q Consensus       806 dLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~~  843 (938)
                      |+++|+++ .+|.. +..+++|++|++++|+++|.++..
T Consensus       450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  487 (520)
T 2z7x_B          450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  487 (520)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             ECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCch
Confidence            99999999 56765 899999999999999999988753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.3e-43  Score=420.54  Aligned_cols=517  Identities=19%  Similarity=0.185  Sum_probs=331.1

Q ss_pred             cEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCC
Q 036642           79 HIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMI  158 (938)
Q Consensus        79 ~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  158 (938)
                      .++.|+|++               +.+.+-.+.+|.++++|++|||++|+|+++ .|..|.++++|++|+|++|++++..
T Consensus        53 ~~~~LdLs~---------------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           53 STKNLDLSF---------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             TCCEEECTT---------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCEEEeeC---------------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCC
Confidence            578899987               355554456899999999999999999964 4567999999999999999999887


Q ss_pred             CcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccC
Q 036642          159 PPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIAN  238 (938)
Q Consensus       159 p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~  238 (938)
                      +..|+++++|++|++++|++.......|+++++|++|++++|.++... .+..+..+++|++|++++|+++++.+..+..
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccccccc
Confidence            888999999999999999999888888888888888888888887642 2345556677777777777777666655544


Q ss_pred             CCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCC-ccchhhhcCCCCCE
Q 036642          239 FSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNS-SIPNWLYRFNRLES  317 (938)
Q Consensus       239 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~  317 (938)
                      +.+++.                     ....++++.|.+....+. ......++.+++.+|.... ..+..+..+..++.
T Consensus       196 L~~l~~---------------------~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~  253 (635)
T 4g8a_A          196 LHQMPL---------------------LNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV  253 (635)
T ss_dssp             HHTCTT---------------------CCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEE
T ss_pred             hhhhhh---------------------hhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccc
Confidence            433220                     112344444444422222 2222334455555544332 22334455555555


Q ss_pred             EEccCCcCC------chhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCC
Q 036642          318 LGVSNNSLQ------GRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKN  391 (938)
Q Consensus       318 L~L~~n~l~------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  391 (938)
                      ..+..+...      ......+..+..+....+..+...                          .........+..+.+
T Consensus       254 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~--------------------------~~~~~~~~~~~~~~~  307 (635)
T 4g8a_A          254 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD--------------------------YYLDGIIDLFNCLTN  307 (635)
T ss_dssp             EEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC--------------------------SCEEECTTTTGGGTT
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhc--------------------------ccccchhhhhhhhcc
Confidence            554332221      111112222222222222111110                          001111223444556


Q ss_pred             ccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCc
Q 036642          392 LYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS  471 (938)
Q Consensus       392 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n  471 (938)
                      ++.+++.++.+....  .+.....++.|++.+|.+..++.                          ..            
T Consensus       308 l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--------------------------~~------------  347 (635)
T 4g8a_A          308 VSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT--------------------------LK------------  347 (635)
T ss_dssp             CSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC--------------------------CB------------
T ss_pred             ccccccccccccccc--ccccchhhhhhhcccccccCcCc--------------------------cc------------
Confidence            666666666655332  24444556666666555543211                          01            


Q ss_pred             ccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhh
Q 036642          472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFIC  551 (938)
Q Consensus       472 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~  551 (938)
                                   +..|+.++++.|.+.... ....                                            
T Consensus       348 -------------l~~L~~l~l~~n~~~~~~-~~~~--------------------------------------------  369 (635)
T 4g8a_A          348 -------------LKSLKRLTFTSNKGGNAF-SEVD--------------------------------------------  369 (635)
T ss_dssp             -------------CTTCCEEEEESCCSCCBC-CCCB--------------------------------------------
T ss_pred             -------------chhhhhcccccccCCCCc-cccc--------------------------------------------
Confidence                         223344444443332111 1111                                            


Q ss_pred             hhhccCCCcceeeccCccCC--CccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--cccc
Q 036642          552 YRAHELKKLQFLYLRGNFLQ--GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKN  627 (938)
Q Consensus       552 ~~l~~l~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~  627 (938)
                           +++|+.+++++|.+.  +..+..+..+.+|+.++++.|...+ .+..+..+++|+.+++.+|+.....+  .+..
T Consensus       370 -----l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~  443 (635)
T 4g8a_A          370 -----LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS  443 (635)
T ss_dssp             -----CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred             -----ccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence                 233333333333332  1233444555666666666666553 34455566677777776666655444  5667


Q ss_pred             CcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcc-cccCCccccCCCccCeeeccccccccccchhhhcchhhhh
Q 036642          628 CTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKF-HSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT  706 (938)
Q Consensus       628 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  706 (938)
                      +++++.++++.|.+.+..|..+. .++.|+.|++++|++ .+..|..+..+++|+.|+|++|++++.+|..|.++++|  
T Consensus       444 l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L--  520 (635)
T 4g8a_A          444 LRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL--  520 (635)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--
T ss_pred             ccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC--
Confidence            77777777777777665555444 678888888888864 44577888999999999999999998888888887776  


Q ss_pred             ccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCc
Q 036642          707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNN  786 (938)
Q Consensus       707 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N  786 (938)
                                                                      +.|+|++|++++..|..++++++|+.|+|++|
T Consensus       521 ------------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  552 (635)
T 4g8a_A          521 ------------------------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  552 (635)
T ss_dssp             ------------------------------------------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred             ------------------------------------------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence                                                            78899999999888889999999999999999


Q ss_pred             cCcccCCcccccc-CCCCEEECCCCccccc
Q 036642          787 FFTGRIPESIGAM-RSLESIDFSLNQLSGE  815 (938)
Q Consensus       787 ~l~~~ip~~~~~l-~~L~~LdLs~N~l~~~  815 (938)
                      +|++.+|+.|..+ ++|+.|||++|++++.
T Consensus       553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          553 HIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             cCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999998 7899999999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=413.65  Aligned_cols=457  Identities=21%  Similarity=0.209  Sum_probs=315.3

Q ss_pred             CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCC
Q 036642          120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY  199 (938)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  199 (938)
                      ++||+++|+++  .+|..+.  ++|++|++++|.+++..|..|+++++|++|++++|++....+..|.++++|++|++++
T Consensus         3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            57888888888  4676654  7888888888888877777888888888888888888877777888888888888888


Q ss_pred             CCCCCCcchhhhhCCCCCCcEEEcCCCCCCCC-CcccccCCCCCCEEECCCCCCCCccCcccccCCCCC--CEEEccCCc
Q 036642          200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHL-PPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL--VFLDLRRNN  276 (938)
Q Consensus       200 n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~  276 (938)
                      |+++.++..     .+++|++|++++|+++++ .|..++++++|++|++++|.+.+    ..+..+++|  ++|++++|.
T Consensus        79 N~l~~lp~~-----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           79 NKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             SCCCEEECC-----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECT
T ss_pred             CceeecCcc-----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccc
Confidence            888765442     688999999999999885 46788999999999999998875    346667777  999999999


Q ss_pred             c--cCCCCccccCCC-CCCEEECcCCcCCCccch-hhhcCCCCCEEEccCCc-------CCchhhHhhhccCCCCeeecC
Q 036642          277 F--QGPIPEGLQNLT-SLKHLLLDSNRFNSSIPN-WLYRFNRLESLGVSNNS-------LQGRVIRSMASLCNLRSVMLS  345 (938)
Q Consensus       277 l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~  345 (938)
                      +  .+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|.       +.+.++ .++.+++|+.|+++
T Consensus       150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~  228 (520)
T 2z7x_B          150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLN  228 (520)
T ss_dssp             TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEE
T ss_pred             ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccc
Confidence            8  777787777665 344677888887765554 56678899999999987       555555 78888888888888


Q ss_pred             CCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccc-----cCCCCCcEEE
Q 036642          346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-----GHLSTLQFID  420 (938)
Q Consensus       346 ~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~  420 (938)
                      +|.+.+..+.......                          ..++|++|++++|++++.+|..+     ..+++|+.++
T Consensus       229 ~~~l~~~~~~~~~~~~--------------------------~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~  282 (520)
T 2z7x_B          229 NIETTWNSFIRILQLV--------------------------WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ  282 (520)
T ss_dssp             EEEEEHHHHHHHHHHH--------------------------HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred             ccccCHHHHHHHHHHh--------------------------hhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence            8887765433211010                          12345555555555555555554     5555555555


Q ss_pred             ccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCC---CCCcEEEccCcccccccchhHhhcCcCccEEeccccc
Q 036642          421 LSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQ---KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ  497 (938)
Q Consensus       421 Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  497 (938)
                      +++|.+ .++.                       .++..+   .+|+.|++++|.+....   +...+++|++|++++|+
T Consensus       283 l~~n~~-~~p~-----------------------~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~  335 (520)
T 2z7x_B          283 VVSDVF-GFPQ-----------------------SYIYEIFSNMNIKNFTVSGTRMVHML---CPSKISPFLHLDFSNNL  335 (520)
T ss_dssp             EEECCC-CSCT-----------------------HHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSC
T ss_pred             ccccce-ecch-----------------------hhhhcccccCceeEEEcCCCcccccc---chhhCCcccEEEeECCc
Confidence            555555 2211                       111111   33444555444443111   00122333333333333


Q ss_pred             ccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC--ccc
Q 036642          498 IHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELT  575 (938)
Q Consensus       498 l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~  575 (938)
                      +++..|                                                ..++.+++|++|++++|++++  .+|
T Consensus       336 l~~~~~------------------------------------------------~~~~~l~~L~~L~L~~N~l~~l~~~~  367 (520)
T 2z7x_B          336 LTDTVF------------------------------------------------ENCGHLTELETLILQMNQLKELSKIA  367 (520)
T ss_dssp             CCTTTT------------------------------------------------TTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred             cChhhh------------------------------------------------hhhccCCCCCEEEccCCccCccccch
Confidence            332211                                                122335566666666666665  455


Q ss_pred             hhhhcCCCCCEEEcCCCcccccCCcc-cCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhc
Q 036642          576 DCWMNYQNLMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERF  653 (938)
Q Consensus       576 ~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l  653 (938)
                      ..+..+++|++|++++|++++.+|.. +..+++|++|++++|++++.++ .+.  ++|++|++++|++. .+|.+++ .+
T Consensus       368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l  443 (520)
T 2z7x_B          368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KL  443 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GC
T ss_pred             HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cC
Confidence            66777777888888888777645543 6677888888888888877666 443  68888899988887 6888887 79


Q ss_pred             CcccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642          654 SRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP  695 (938)
Q Consensus       654 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  695 (938)
                      ++|++|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus       444 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999999999999986433448889999999999999987654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-42  Score=420.05  Aligned_cols=448  Identities=18%  Similarity=0.229  Sum_probs=308.4

Q ss_pred             CCCCEEECcCCcCCCccchhhhcCCCCCEEEc-cCCcCCchhhHhhhcc-CCCCeee---------------cCCCcCcc
Q 036642          289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGV-SNNSLQGRVIRSMASL-CNLRSVM---------------LSCVKLSQ  351 (938)
Q Consensus       289 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l-~~L~~L~---------------L~~n~l~~  351 (938)
                      .+++.|+|++|.+.|.+|+.++++++|++|+| ++|.+.|..+...... ..+....               .....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46788888888888888888888888888888 7776665532110000 0000000               00001111


Q ss_pred             chhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccC--CeecccccccccCCCCCcEEEccCccCCC-
Q 036642          352 EISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSN--NSIVGPIPFSLGHLSTLQFIDLSYNELNG-  428 (938)
Q Consensus       352 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~--n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-  428 (938)
                      ..+..    +...+              ...+........++.+.+..  |++++ +|..+.++++|++|+|++|.+++ 
T Consensus       403 l~~~~----l~~~~--------------~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~  463 (876)
T 4ecn_A          403 LLQDA----INRNP--------------EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYD  463 (876)
T ss_dssp             HHHHH----HHTCT--------------TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGG
T ss_pred             HHHHH----hhhCc--------------cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCC
Confidence            11110    00000              00011112223344444443  78887 78888888888888888888887 


Q ss_pred             -----------------CCCCCC--CccccceeecccccCCCCCCcccCCCCCCcEEEccCcc-ccc-ccchhHhhcCcC
Q 036642          429 -----------------MNDNWI--PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSG-ITG-SIPNIFWSSASQ  487 (938)
Q Consensus       429 -----------------~~~~~~--~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~l~~  487 (938)
                                       +|..+.  .+.+|+.|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+.. ++ 
T Consensus       464 ~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~-  541 (876)
T 4ecn_A          464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LA-  541 (876)
T ss_dssp             GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HH-
T ss_pred             cccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hh-
Confidence                             455444  45555555555555555666666666666666666665 655 55554421 11 


Q ss_pred             ccEEecccccccccCCCccccccCceeecCCccCccCCCC-----CCCCCcEEEccCCccccccchhhhhhhccCCCcce
Q 036642          488 IYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPL-----ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQF  562 (938)
Q Consensus       488 L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~-----~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~  562 (938)
                                     ..+..+++|++|++++|.+. .+|.     .+++|+.|++++|.++ .+|     .++.+++|+.
T Consensus       542 ---------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~  599 (876)
T 4ecn_A          542 ---------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-----AFGTNVKLTD  599 (876)
T ss_dssp             ---------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-----CCCTTSEESE
T ss_pred             ---------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-----hhcCCCcceE
Confidence                           00111224444444444444 3333     1345555555555555 333     3466889999


Q ss_pred             eeccCccCCCccchhhhcCCC-CCEEEcCCCcccccCCcccCCCCC--CcEEEcccccccccccccc------cCcCCcE
Q 036642          563 LYLRGNFLQGELTDCWMNYQN-LMILDLSNNKFTGNLPISLGSLIS--LQSLHLRKNNLSGTIHSLK------NCTALLT  633 (938)
Q Consensus       563 L~ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~~~l~------~l~~L~~  633 (938)
                      |++++|+++ .+|..+.++++ |+.|++++|+++ .+|..+..++.  |+.|+|++|++++.+|.+.      .+++|+.
T Consensus       600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             EECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            999999998 78888999998 999999999998 78888877654  9999999999988776433      4568999


Q ss_pred             EECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccC--------CCccCeeeccccccccccchhhh--cchh
Q 036642          634 LDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCD--------LAFLQIVDLADNNLSGEVPRCIH--NLRA  703 (938)
Q Consensus       634 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--------l~~L~~L~Ls~N~l~~~~p~~l~--~l~~  703 (938)
                      |++++|++. .+|.+++..+++|+.|+|++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++
T Consensus       678 L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~  754 (876)
T 4ecn_A          678 VTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY  754 (876)
T ss_dssp             EECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred             EEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence            999999998 688888778899999999999998 45555433        338999999999998 7887765  5555


Q ss_pred             hhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeC
Q 036642          704 MVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNL  783 (938)
Q Consensus       704 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L  783 (938)
                      |                                                  +.|+|++|++++ +|..++.+++|+.|+|
T Consensus       755 L--------------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L  783 (876)
T 4ecn_A          755 L--------------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGI  783 (876)
T ss_dssp             C--------------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred             c--------------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence            4                                                  789999999997 8999999999999999


Q ss_pred             cC------ccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642          784 SN------NFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG  838 (938)
Q Consensus       784 s~------N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  838 (938)
                      ++      |++.+.+|..|+++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++..
T Consensus       784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            76      889999999999999999999999999 78999876  689999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.9e-42  Score=406.88  Aligned_cols=463  Identities=17%  Similarity=0.194  Sum_probs=286.2

Q ss_pred             CEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCC
Q 036642          268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV  347 (938)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  347 (938)
                      +++++++|.+++ +|..+.  ++|++|++++|.+++..|..+.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            444444444442 333332  44555555555555444445555555555555555555544555555555555555555


Q ss_pred             cCccchhhHHHhhhcccccCccEEEccCCcCccc-cccccCCCCCccEEEccCCeecccccccccCCCCC--cEEEccCc
Q 036642          348 KLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-LTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTL--QFIDLSYN  424 (938)
Q Consensus       348 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~Ls~n  424 (938)
                      +++. +|.    .  .++ +|++|++++|.+++. .|..++++++|++|++++|++++.   .+..+++|  ++|++++|
T Consensus       111 ~l~~-lp~----~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          111 RLQN-ISC----C--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CCCE-ECS----C--CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred             cCCc-cCc----c--ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence            4442 221    0  111 444444444444432 234555566666666666665542   23333333  55555555


Q ss_pred             cCCCCCCCCCCccccceeecccccCCCCCCcccCCCC-CCcEEEccCcccccccchhHhhcCcCccEEeccccc-----c
Q 036642          425 ELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQK-HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ-----I  498 (938)
Q Consensus       425 ~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-----l  498 (938)
                      .+..                     .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|+     +
T Consensus       180 ~l~~---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l  238 (562)
T 3a79_B          180 SYHI---------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL  238 (562)
T ss_dssp             SCCC---------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH
T ss_pred             cccc---------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchH
Confidence            5510                     234444444433 112446666666665555555556666666666663     2


Q ss_pred             cccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhh
Q 036642          499 HGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCW  578 (938)
Q Consensus       499 ~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~  578 (938)
                      .+.++.+...++|+.+++                     +++.+++.........+ ..++|++|++++|.++|.+|..+
T Consensus       239 ~~~~~~l~~l~~L~~L~L---------------------~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~  296 (562)
T 3a79_B          239 MTFLSELTRGPTLLNVTL---------------------QHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREE  296 (562)
T ss_dssp             HHHHHHHHSCSSCEEEEE---------------------EEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCC
T ss_pred             HHHHHHHhccCcceEEEe---------------------cCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchh
Confidence            222223333344444444                     33333332221121211 23478888888888887777766


Q ss_pred             -----hcCCCCCEEEcCCCcccccCC-cccCC---CCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhH
Q 036642          579 -----MNYQNLMILDLSNNKFTGNLP-ISLGS---LISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWI  649 (938)
Q Consensus       579 -----~~l~~L~~L~Ls~n~l~~~~p-~~~~~---l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  649 (938)
                           ..++.|+.++++.+.+  .+| ..+..   ..+|+.|++++|.+.... ....+++|++|++++|++.+.+|.++
T Consensus       297 ~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~  373 (562)
T 3a79_B          297 FTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGC  373 (562)
T ss_dssp             CCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             hhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhh
Confidence                 5666666666666665  344 22222   256888888888775322 23677888888888888888777777


Q ss_pred             hhhcCcccEEeeCCCccccc--CCccccCCCccCeeeccccccccccchh-hhcchhhhhccccccchhhhhhhhccCCC
Q 036642          650 GERFSRMVVLILRSNKFHSL--LPKGLCDLAFLQIVDLADNNLSGEVPRC-IHNLRAMVTLNSHAGKAIQYQFLLYASRA  726 (938)
Q Consensus       650 ~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~~~~~~~~~~~~~~~~~~~  726 (938)
                      . .+++|++|++++|++++.  +|..+..+++|+.|++++|++++.+|.. +..+++                       
T Consensus       374 ~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~-----------------------  429 (562)
T 3a79_B          374 S-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES-----------------------  429 (562)
T ss_dssp             C-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT-----------------------
T ss_pred             c-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc-----------------------
Confidence            6 688888888888888873  4567888999999999999998766653 444443                       


Q ss_pred             cchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEE
Q 036642          727 PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESID  806 (938)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~Ld  806 (938)
                                                 |+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|++||
T Consensus       430 ---------------------------L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~  479 (562)
T 3a79_B          430 ---------------------------ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELN  479 (562)
T ss_dssp             ---------------------------CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred             ---------------------------CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence                                       37899999999988887765  78999999999999 7888888999999999


Q ss_pred             CCCCcccccCCcc-ccCCCCCCeEeCcCCcccccCCCCCc
Q 036642          807 FSLNQLSGEIPQS-MSSLTYLNHLNLSNNNLTGKIPSSTQ  845 (938)
Q Consensus       807 Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~~~~  845 (938)
                      |++|+++ .+|.. +..+++|++|++++|+++|.||..+.
T Consensus       480 L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          480 VASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             CCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             CCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            9999999 56666 99999999999999999999886543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-40  Score=389.68  Aligned_cols=460  Identities=22%  Similarity=0.208  Sum_probs=313.8

Q ss_pred             CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeC
Q 036642          118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL  197 (938)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  197 (938)
                      ..+++|+++|+++.  +|..+.  ++|++|++++|.+++..|..|+++++|++|++++|++....+..|.++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~--ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH--VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS--CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc--CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            44888999988884  676553  78899999999988887788999999999999999988888888888999999999


Q ss_pred             CCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCC-cccccCCCCCCEEECCCCCCCCccCcccccCCCCC--CEEEccC
Q 036642          198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLP-PLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL--VFLDLRR  274 (938)
Q Consensus       198 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~  274 (938)
                      ++|+++.++..     .+++|++|++++|++++++ +..|+++++|++|++++|.+.+.    .+..+++|  ++|++++
T Consensus       108 s~N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          108 SHNRLQNISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             TTSCCCEECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEE
T ss_pred             CCCcCCccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeec
Confidence            99988866542     7889999999999998875 57899999999999999998753    34444555  9999999


Q ss_pred             Ccc--cCCCCccccCCC-CCCEEECcCCcCCCccch-hhhcCCCCCEEEccCCcCC----chhhHhhhccCCCCeeecCC
Q 036642          275 NNF--QGPIPEGLQNLT-SLKHLLLDSNRFNSSIPN-WLYRFNRLESLGVSNNSLQ----GRVIRSMASLCNLRSVMLSC  346 (938)
Q Consensus       275 n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~  346 (938)
                      |.+  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|...    ...+..+..+++|+.+++..
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            998  888888887765 122567788887775554 3457788999999988532    12234567778888887777


Q ss_pred             CcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccc-----cCCCCCcEEEc
Q 036642          347 VKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL-----GHLSTLQFIDL  421 (938)
Q Consensus       347 n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L  421 (938)
                      +.+.+.......                         ..+ ..++|++|++++|.+++.+|..+     ..++.|+.+++
T Consensus       259 ~~l~~~~~~~~~-------------------------~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~  312 (562)
T 3a79_B          259 IETTWKCSVKLF-------------------------QFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV  312 (562)
T ss_dssp             EEECHHHHHHHH-------------------------HHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred             CcCcHHHHHHHH-------------------------Hhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence            766553222110                         001 12356666666666665555554     44444444444


Q ss_pred             cCccCCCCCCCCCCccccceeecccccCCCCCCcccC---CCCCCcEEEccCcccccccchhHhhcCcCccEEecccccc
Q 036642          422 SYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLH---SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI  498 (938)
Q Consensus       422 s~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  498 (938)
                      +.+.+ .++.                       .++.   ...+|++|++++|.+....   +...+++|++|++++|++
T Consensus       313 ~~~~~-~~p~-----------------------~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l  365 (562)
T 3a79_B          313 KNQVF-LFSK-----------------------EALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVF  365 (562)
T ss_dssp             EECCC-SSCH-----------------------HHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCC
T ss_pred             cccee-ecCh-----------------------hhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCcc
Confidence            44443 1110                       1111   1134555555555543111   001223333333333333


Q ss_pred             cccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC--ccch
Q 036642          499 HGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELTD  576 (938)
Q Consensus       499 ~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~  576 (938)
                      ++..+                                                ..+..+++|++|++++|++++  .+|.
T Consensus       366 ~~~~~------------------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~  397 (562)
T 3a79_B          366 TDSVF------------------------------------------------QGCSTLKRLQTLILQRNGLKNFFKVAL  397 (562)
T ss_dssp             CTTTT------------------------------------------------TTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred             ccchh------------------------------------------------hhhcccCCCCEEECCCCCcCCcccchh
Confidence            32221                                                122345666666666666665  3345


Q ss_pred             hhhcCCCCCEEEcCCCcccccCCc-ccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcC
Q 036642          577 CWMNYQNLMILDLSNNKFTGNLPI-SLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFS  654 (938)
Q Consensus       577 ~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~  654 (938)
                      .+.++++|++|++++|++++.+|. .+..+++|++|++++|++++.++ .+.  ++|++|++++|+++ .+|.+++ .++
T Consensus       398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~  473 (562)
T 3a79_B          398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQ  473 (562)
T ss_dssp             TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSC
T ss_pred             hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc-CCC
Confidence            677778888888888888774554 46778888888888888877666 443  68888889888887 5888887 789


Q ss_pred             cccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642          655 RMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP  695 (938)
Q Consensus       655 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  695 (938)
                      +|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       474 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            99999999999986443348899999999999999987665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.1e-39  Score=371.27  Aligned_cols=300  Identities=22%  Similarity=0.240  Sum_probs=163.9

Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeec
Q 036642          265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML  344 (938)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  344 (938)
                      ++|++|++++|.+ +.+|++++++++|++|++++|.+.+.+|..++++++|+.+++.+|..           .       
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~-------   71 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------R-------   71 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------H-------
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------c-------
Confidence            4555555555555 45555555555555555555555555555555444444333332210           1       


Q ss_pred             CCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCc
Q 036642          345 SCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYN  424 (938)
Q Consensus       345 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  424 (938)
                                            ++++|++++|.+++.. .   ..++|++|++++|.+++ +|..   .++|++|++++|
T Consensus        72 ----------------------~l~~L~l~~~~l~~lp-~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n  121 (454)
T 1jl5_A           72 ----------------------QAHELELNNLGLSSLP-E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNN  121 (454)
T ss_dssp             ----------------------TCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred             ----------------------CCCEEEecCCccccCC-C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCC
Confidence                                  4555666666555422 1   12567777777777775 4432   366777777777


Q ss_pred             cCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCC
Q 036642          425 ELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPN  504 (938)
Q Consensus       425 ~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  504 (938)
                      ++++++..   +.+|++|++++|.+.+ +| .+..+++|++|++++|++++ +|..    .++|++|++++|++++ +|.
T Consensus       122 ~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~~  190 (454)
T 1jl5_A          122 NLKALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LPE  190 (454)
T ss_dssp             CCSCCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CCC
T ss_pred             ccCcccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Ccc
Confidence            77765432   2567777777777765 55 48888888888888888884 5543    3578888888888887 457


Q ss_pred             ccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCC
Q 036642          505 LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL  584 (938)
Q Consensus       505 l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  584 (938)
                      +..+++|++|++++|.+++ +|...++|++|++++|.++ .+|     .++.+++|++|++++|++++ +|..   .++|
T Consensus       191 ~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp-----~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L  259 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELP-----ELQNLPFLTTIYADNNLLKT-LPDL---PPSL  259 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCC-----CCTTCTTCCEEECCSSCCSS-CCSC---CTTC
T ss_pred             ccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-ccc-----ccCCCCCCCEEECCCCcCCc-cccc---cccc
Confidence            7788888888888888776 4444456666666666665 233     13455666666666666654 3321   2556


Q ss_pred             CEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccC
Q 036642          585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFV  642 (938)
Q Consensus       585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~  642 (938)
                      +.|++++|++++ +|..   +++|+.|++++|++++... +  .++|+.|++++|++.
T Consensus       260 ~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~-~--~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          260 EALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE-L--PPNLYYLNASSNEIR  310 (454)
T ss_dssp             CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC-C--CTTCCEEECCSSCCS
T ss_pred             CEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC-c--CCcCCEEECcCCcCC
Confidence            666666666553 3332   2455555555555554211 1  134555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.8e-39  Score=368.05  Aligned_cols=427  Identities=21%  Similarity=0.254  Sum_probs=235.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCC
Q 036642          113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL  192 (938)
Q Consensus       113 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L  192 (938)
                      -.+.++|++|++++|.+.  .+|..++++++|++|++++|.+.+.+|.+++++++|+++++.+|..           .++
T Consensus         7 ~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l   73 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQA   73 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTC
T ss_pred             ccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCC
Confidence            345689999999999994  5999999999999999999999999999999999997777766532           467


Q ss_pred             CEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642          193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL  272 (938)
Q Consensus       193 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  272 (938)
                      ++|++++|.+++++.+      .++|++|++++|.+++++.    ..++|++|++++|++++.  +..   .++|++|++
T Consensus        74 ~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l--~~~---~~~L~~L~L  138 (454)
T 1jl5_A           74 HELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKAL--SDL---PPLLEYLGV  138 (454)
T ss_dssp             SEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCC--CSC---CTTCCEEEC
T ss_pred             CEEEecCCccccCCCC------cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcc--cCC---CCCCCEEEC
Confidence            7788888877776542      3678888888888887653    237888888888887752  221   268888888


Q ss_pred             cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccc
Q 036642          273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQE  352 (938)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  352 (938)
                      ++|.+++ +| .++++++|++|++++|.+++ +|..+   .+|++|++++|.+++ +| .++++++|+.|++++|.+.+.
T Consensus       139 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l  210 (454)
T 1jl5_A          139 SNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL  210 (454)
T ss_dssp             CSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC
T ss_pred             cCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC
Confidence            8888885 66 58888888888888888875 55433   488888888888876 34 577888888888888877652


Q ss_pred             hhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCC
Q 036642          353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDN  432 (938)
Q Consensus       353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  432 (938)
                       |.        .+++|++|++++|.+. .+| .++.+++|++|++++|++++ +|.   ..++|++|++++|++++++. 
T Consensus       211 -~~--------~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~-  274 (454)
T 1jl5_A          211 -PD--------LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE-  274 (454)
T ss_dssp             -CC--------CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC-
T ss_pred             -CC--------CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCc-
Confidence             21        1126666666666666 344 25666666666666666664 332   12556666666666655432 


Q ss_pred             CCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCc
Q 036642          433 WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE  512 (938)
Q Consensus       433 ~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~  512 (938)
                                             .   .++|++|++++|.+++ +|.    ..++|+.|++++|++++.. .+  .++|+
T Consensus       275 -----------------------~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i~-~~--~~~L~  320 (454)
T 1jl5_A          275 -----------------------L---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSLC-DL--PPSLE  320 (454)
T ss_dssp             -----------------------C---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEEC-CC--CTTCC
T ss_pred             -----------------------c---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCccc-CC--cCcCC
Confidence                                   1   2456666666666664 111    1245677777777666522 11  13577


Q ss_pred             eeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC--ccchhhhcCCCCCEEEcC
Q 036642          513 VLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG--ELTDCWMNYQNLMILDLS  590 (938)
Q Consensus       513 ~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls  590 (938)
                      +|++++|++++ +|..+++|++|++++|++++ +|.       .+++|++|++++|++++  .+|..+..        ++
T Consensus       321 ~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~-lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~  383 (454)
T 1jl5_A          321 ELNVSNNKLIE-LPALPPRLERLIASFNHLAE-VPE-------LPQNLKQLHVEYNPLREFPDIPESVED--------LR  383 (454)
T ss_dssp             EEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSSCCCCCTTCCE--------EE
T ss_pred             EEECCCCcccc-ccccCCcCCEEECCCCcccc-ccc-------hhhhccEEECCCCCCCcCCCChHHHHh--------hh
Confidence            77777777775 55556777777777777764 332       25677888888888776  55554432        23


Q ss_pred             CCcccccCCcccCCCCCCcEEEcccccccc--cccccccCcCCcEEECCCCccCCCCChhHh
Q 036642          591 NNKFTGNLPISLGSLISLQSLHLRKNNLSG--TIHSLKNCTALLTLDVGENEFVENIPTWIG  650 (938)
Q Consensus       591 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  650 (938)
                      .|.+.+.+|..   +++|+.|++++|++++  .+|     ++++.|++++|.+.+.+|.+..
T Consensus       384 ~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~~~~~~~~~~  437 (454)
T 1jl5_A          384 MNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERVVDPYEFAHE  437 (454)
T ss_dssp             CCC-----------------------------------------------------------
T ss_pred             hcccccccccc---cCcCCEEECCCCcCCccccch-----hhHhheeCcCcccCCccccCHH
Confidence            45566666653   4788999999999887  444     3567778888888887776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.2e-39  Score=353.36  Aligned_cols=293  Identities=27%  Similarity=0.384  Sum_probs=223.9

Q ss_pred             CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEecCCCCCccCCccCCCCCCcccCc-
Q 036642           33 GCLESERRALLRFKQDLQDPSNRLASWIGYEDCCA--WAGVVCDNVT--GHIVELNLRNPFTYCDLSQSKANPRSMLVG-  107 (938)
Q Consensus        33 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g-  107 (938)
                      .|.++|++||++||+++.||. .+.+|..+++||.  |.||+|+..+  ++|+.+++++.               .+.| 
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~---------------~l~~~   65 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL---------------NLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC---------------CCSSC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC---------------CccCC
Confidence            599999999999999998876 7899976689998  9999998655  89999999984               7778 


Q ss_pred             -cccCCccCCCCCCEEeCCC-CCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccc
Q 036642          108 -KVNPSLLDLKHLSYLDLSY-NDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWW  185 (938)
Q Consensus       108 -~l~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~  185 (938)
                       .+|+.+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+++.+|..|+++++|++|++++|.+....+..
T Consensus        66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           66 YPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             cccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence             8999999999999999995 999874 8999999999999999999999999999999999999999999998777777


Q ss_pred             cCCCCCCCEEeCCCCCCCCCcchhhhhCCCC-CCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCC
Q 036642          186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLP-SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGL  264 (938)
Q Consensus       186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  264 (938)
                      +..+++|++|++++|.+++.  ++..+..++ +|++|++++|++++..+..+..++ |++|++++|.+.+.. +..+..+
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~-~~~~~~l  220 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSD  220 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC-GGGCCTT
T ss_pred             HhcCCCCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC-CHHHhcC
Confidence            77778888888877777632  224455555 677777777776666666666665 666666666665543 5666666


Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeec
Q 036642          265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML  344 (938)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  344 (938)
                      ++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|.++..+++|++|++++|++++.+|.. ..+++|+.+++
T Consensus       221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l  298 (313)
T 1ogq_A          221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY  298 (313)
T ss_dssp             SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred             CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence            6666666666666654444 555666666666666666666666666666666666666666655554 55566666666


Q ss_pred             CCCc
Q 036642          345 SCVK  348 (938)
Q Consensus       345 ~~n~  348 (938)
                      ++|.
T Consensus       299 ~~N~  302 (313)
T 1ogq_A          299 ANNK  302 (313)
T ss_dssp             CSSS
T ss_pred             cCCC
Confidence            6554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=8.6e-38  Score=359.32  Aligned_cols=356  Identities=19%  Similarity=0.175  Sum_probs=266.0

Q ss_pred             ccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeec
Q 036642          438 QLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSL  516 (938)
Q Consensus       438 ~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L  516 (938)
                      ++++|++++|.+.+..|..+.++++|++|++++|.+.+.++...+..+++|++|++++|++++..| .+..+++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            344444444444444555666667777777777766655555555666677777777777766655 5666677777777


Q ss_pred             CCccCccCCCC-----CCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcC--CCCCEEEc
Q 036642          517 GSNSFSGALPL-----ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNY--QNLMILDL  589 (938)
Q Consensus       517 ~~n~l~~~~p~-----~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l--~~L~~L~L  589 (938)
                      ++|.+++..+.     .+++|++|++++|.+++..|..   .+..+++|++|++++|++++..+..+..+  .+|+.|++
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS---FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG---GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCccc---ccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            77776653221     2456777777777776654422   14567888888888888887777777665  67888888


Q ss_pred             CCCcccccCCccc--------CCCCCCcEEEccccccccccc-ccccC---cCCcEEECCCCccCCCC----------Ch
Q 036642          590 SNNKFTGNLPISL--------GSLISLQSLHLRKNNLSGTIH-SLKNC---TALLTLDVGENEFVENI----------PT  647 (938)
Q Consensus       590 s~n~l~~~~p~~~--------~~l~~L~~L~L~~n~l~~~~~-~l~~l---~~L~~L~Ls~N~l~~~~----------p~  647 (938)
                      ++|.+.+..+..+        ..+++|++|++++|++++..+ .+...   ++|+.|++++|...+..          +.
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence            8888876554432        356788888888888887666 44433   77888888887654421          11


Q ss_pred             hHh-hhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCC
Q 036642          648 WIG-ERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRA  726 (938)
Q Consensus       648 ~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~  726 (938)
                      .+. ...++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..+++|                      
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------  325 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL----------------------  325 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------
T ss_pred             ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----------------------
Confidence            111 023689999999999999889999999999999999999998888787776665                      


Q ss_pred             cchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEE
Q 036642          727 PSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESID  806 (938)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~Ld  806 (938)
                                                  +.|++++|++++..|..++++++|+.|+|++|++++..|..|+.+++|++||
T Consensus       326 ----------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          326 ----------------------------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             ----------------------------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ----------------------------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence                                        7899999999988899999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcC
Q 036642          807 FSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQL  846 (938)
Q Consensus       807 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  846 (938)
                      |++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus       378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            9999999877778899999999999999999999965444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.5e-38  Score=359.82  Aligned_cols=376  Identities=20%  Similarity=0.186  Sum_probs=242.6

Q ss_pred             CCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEE
Q 036642          216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL  295 (938)
Q Consensus       216 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  295 (938)
                      ++|++|++++|.++++.+..|.++++|++|++++|.+.+.+.+..+.                        .+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~------------------------~l~~L~~L~   85 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR------------------------GLSSLIILK   85 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT------------------------TCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc------------------------ccccCCEEe
Confidence            45555555555555555555555555555555555554433333444                        444555555


Q ss_pred             CcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHh--hhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEc
Q 036642          296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRS--MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVL  373 (938)
Q Consensus       296 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l  373 (938)
                      +++|.+++..|..++++++|++|++++|.+++..+..  ++.+++|+.|++++|.+.+.                     
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------  144 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI---------------------  144 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC---------------------
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc---------------------
Confidence            5555544444455555555555555555555433332  44444444444333333322                     


Q ss_pred             cCCcCccccccc-cCCCCCccEEEccCCeecccccccccCC--CCCcEEEccCccCCCCCCCCCCccccceeecccccCC
Q 036642          374 RGSSVSGHLTYK-LGQFKNLYYLDLSNNSIVGPIPFSLGHL--STLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLG  450 (938)
Q Consensus       374 ~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~  450 (938)
                              .|.. ++.+++|++|++++|++++..+..+..+  .+|+.|++++|.+.+.+..+...              
T Consensus       145 --------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------  202 (455)
T 3v47_A          145 --------QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------  202 (455)
T ss_dssp             --------CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------
T ss_pred             --------CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc--------------
Confidence                    2222 4455566666666666665555555544  56666777776666654332211              


Q ss_pred             CCCCcccCCCCCCcEEEccCcccccccchhHhhcC--cCccEEecccccccccCCCccccccCceeecCCccCccCCCCC
Q 036642          451 SRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSA--SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLI  528 (938)
Q Consensus       451 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~  528 (938)
                       .....+..+++|++|++++|.+++..|..+....  ++|+.|++++|...+.....             +.+.+..+. 
T Consensus       203 -~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~-  267 (455)
T 3v47_A          203 -EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-------------TNFKDPDNF-  267 (455)
T ss_dssp             -HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-------------CSSCCCCTT-
T ss_pred             -cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch-------------hhhccCccc-
Confidence             0011234567888888888888887777765432  56777777776654422111             111110000 


Q ss_pred             CCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCC
Q 036642          529 SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL  608 (938)
Q Consensus       529 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  608 (938)
                                  .+.          -...++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|
T Consensus       268 ------------~~~----------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          268 ------------TFK----------GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             ------------TTG----------GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ------------ccc----------cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence                        000          0124678999999999998888889999999999999999998888899999999


Q ss_pred             cEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccc
Q 036642          609 QSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLAD  687 (938)
Q Consensus       609 ~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  687 (938)
                      ++|+|++|.+++..+ .+.++++|++|++++|++.+..|.++. .+++|++|++++|++++..+..+..+++|+.|++++
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence            999999999988877 889999999999999999887787776 799999999999999987777889999999999999


Q ss_pred             cccccccch
Q 036642          688 NNLSGEVPR  696 (938)
Q Consensus       688 N~l~~~~p~  696 (938)
                      |++++..|.
T Consensus       405 N~l~~~~~~  413 (455)
T 3v47_A          405 NPWDCSCPR  413 (455)
T ss_dssp             SCBCCCTTT
T ss_pred             CCcccCCCc
Confidence            999988873

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.6e-36  Score=343.90  Aligned_cols=412  Identities=19%  Similarity=0.181  Sum_probs=235.9

Q ss_pred             ccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhC
Q 036642          134 IPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTN  213 (938)
Q Consensus       134 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  213 (938)
                      .+..++++++|++|++++|.+++. | .++++++|++|++++|.+...+   +..+++|++|++++|.+++++     +.
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~-----~~  103 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD-----VT  103 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-----CT
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee-----cC
Confidence            455678899999999999999864 5 6888999999999998887652   666777777777777666642     45


Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCE
Q 036642          214 TLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKH  293 (938)
Q Consensus       214 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  293 (938)
                      .+++|++|++++|++++++   ++.+++|++|++++|++++.    .++.+++|++|++++|...+.+  .+..+++|++
T Consensus       104 ~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  174 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT  174 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred             CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee----ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence            5666666666666666542   55556666666666655541    1445555555555555433333  2344444444


Q ss_pred             EECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEc
Q 036642          294 LLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVL  373 (938)
Q Consensus       294 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l  373 (938)
                      |++++|.+++ +|  +..+++|++|++++|.+++.                                             
T Consensus       175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---------------------------------------------  206 (457)
T 3bz5_A          175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---------------------------------------------  206 (457)
T ss_dssp             EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---------------------------------------------
T ss_pred             EECCCCccce-ec--cccCCCCCEEECcCCcCCee---------------------------------------------
Confidence            4444444443 22  33344444444444433321                                             


Q ss_pred             cCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCC
Q 036642          374 RGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRF  453 (938)
Q Consensus       374 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~  453 (938)
                                 .++.+++|++|++++|++++ +|  +..+++|++|++++|++++.+                       
T Consensus       207 -----------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-----------------------  249 (457)
T 3bz5_A          207 -----------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-----------------------  249 (457)
T ss_dssp             -----------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-----------------------
T ss_pred             -----------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-----------------------
Confidence                       13344555555555555554 33  455555555555555555432                       


Q ss_pred             CcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCc
Q 036642          454 PSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLI  533 (938)
Q Consensus       454 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~  533 (938)
                         +..+++|+.|++++|               +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|....+|+
T Consensus       250 ---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~  310 (457)
T 3bz5_A          250 ---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGIT  310 (457)
T ss_dssp             ---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred             ---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcce
Confidence               122333444443332               12334444444443333 23345555555655555555554445555


Q ss_pred             EEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEc
Q 036642          534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHL  613 (938)
Q Consensus       534 ~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  613 (938)
                      .|++++|                 ++|++|++++|++++. +  +.++++|+.|++++|++++        ++.|+.|++
T Consensus       311 ~L~l~~~-----------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l  362 (457)
T 3bz5_A          311 ELDLSQN-----------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPA  362 (457)
T ss_dssp             CCCCTTC-----------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSG
T ss_pred             Eechhhc-----------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccc
Confidence            5554433                 5678888888888873 3  7778888888888888875        245666778


Q ss_pred             ccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCc--cccCCC-----ccCeeecc
Q 036642          614 RKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK--GLCDLA-----FLQIVDLA  686 (938)
Q Consensus       614 ~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~-----~L~~L~Ls  686 (938)
                      ++|.+.|.    .++..|..+++++|+++|.+|..+.+...++....-..+........  .+.+++     -+.....+
T Consensus       363 ~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~  438 (457)
T 3bz5_A          363 LNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSE  438 (457)
T ss_dssp             GGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECT
T ss_pred             cCCcEEec----ceeeecCccccccCcEEEEcChhHhcccCceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecC
Confidence            88888775    35566777888888888888877654455555444443322211100  011111     12223334


Q ss_pred             ccccccccchhhhc
Q 036642          687 DNNLSGEVPRCIHN  700 (938)
Q Consensus       687 ~N~l~~~~p~~l~~  700 (938)
                      +|.++|.++..+..
T Consensus       439 ~~~fsG~i~~p~~~  452 (457)
T 3bz5_A          439 NGAIVGTVTTPFEA  452 (457)
T ss_dssp             TSSEEEEEEEEBC-
T ss_pred             CcEEeeEecccccc
Confidence            78888888765543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=338.82  Aligned_cols=357  Identities=19%  Similarity=0.162  Sum_probs=248.7

Q ss_pred             cccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCC
Q 036642          384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHL  463 (938)
Q Consensus       384 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L  463 (938)
                      ..++.+++|++|++++|.+++. | .+..+++|++|++++|++++++  +....+|++|++++|.+.+. +  +..+++|
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            3455566666666666666643 3 4666666666666666666653  44455566666666665543 2  5667777


Q ss_pred             cEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCC-CCCCCcEEEccCCcc
Q 036642          464 NYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPL-ISSNLIELDFSNNSI  542 (938)
Q Consensus       464 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~-~~~~L~~L~ls~n~l  542 (938)
                      ++|++++|++++ +|   +..+++|++|++++|++++.  .+..+++|++|++++|...+.++. .+++|++|++++|++
T Consensus       109 ~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          109 TYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             CEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence            777777777765 33   35566777777777777663  355666777777777754444432 256677777777777


Q ss_pred             ccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccc
Q 036642          543 SGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI  622 (938)
Q Consensus       543 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  622 (938)
                      ++. +      +..+++|++|++++|++++.   .+..+++|+.|++++|++++ +|  ++.+++|+.|++++|++++.+
T Consensus       183 ~~l-~------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          183 TEL-D------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CCC-C------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             cee-c------cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence            652 1      45567777777777777754   26677777777777777776 45  667777777777777777653


Q ss_pred             cccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcch
Q 036642          623 HSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR  702 (938)
Q Consensus       623 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  702 (938)
                        +..+++|+.|++++|               +|+.|++++|++.+.+|  +..+++|+.|++++|+..+.+|....   
T Consensus       250 --~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~---  307 (457)
T 3bz5_A          250 --VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA---  307 (457)
T ss_dssp             --CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC---
T ss_pred             --HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC---
Confidence              445667777776654               35667788888777776  46788999999999998888885433   


Q ss_pred             hhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEe
Q 036642          703 AMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFN  782 (938)
Q Consensus       703 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~  782 (938)
                      .++.+++++                                       .+.|+.|++++|++++ +|  ++++++|+.|+
T Consensus       308 ~L~~L~l~~---------------------------------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~  345 (457)
T 3bz5_A          308 GITELDLSQ---------------------------------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLS  345 (457)
T ss_dssp             CCSCCCCTT---------------------------------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEE
T ss_pred             cceEechhh---------------------------------------cccCCEEECCCCcccc-cc--cccCCcCcEEE
Confidence            343333321                                       2346899999999998 44  99999999999


Q ss_pred             CcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC
Q 036642          783 LSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS  843 (938)
Q Consensus       783 Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  843 (938)
                      +++|++++        ++.|+.|++++|.++|.     .++..|+.+++++|+++|.||..
T Consensus       346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            99999996        35677889999999987     34566888999999999999964

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.6e-34  Score=327.65  Aligned_cols=344  Identities=26%  Similarity=0.364  Sum_probs=244.5

Q ss_pred             CccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeeccc
Q 036642          367 GLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRH  446 (938)
Q Consensus       367 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~  446 (938)
                      +++.|++.++.+... | .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.                 
T Consensus        47 ~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----------------  105 (466)
T 1o6v_A           47 QVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-----------------  105 (466)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------
T ss_pred             cccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-----------------
Confidence            566677766666542 2 25566666666666666665433  66666666666666666553                 


Q ss_pred             ccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCC
Q 036642          447 CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALP  526 (938)
Q Consensus       447 ~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p  526 (938)
                            .+  +..+++|++|++++|.+++..+   +..+++|++|++++|.+.+. +.+..+++|++|+++ |.+.+.  
T Consensus       106 ------~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~-~~~~~~--  170 (466)
T 1o6v_A          106 ------TP--LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFG-NQVTDL--  170 (466)
T ss_dssp             ------GG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSEEEEE-ESCCCC--
T ss_pred             ------hh--hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-hhhccCCcccEeecC-CcccCc--
Confidence                  22  5666777777777777664432   35566777777777766642 345555555555553 222211  


Q ss_pred             CCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCC
Q 036642          527 LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI  606 (938)
Q Consensus       527 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  606 (938)
                                               ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..|  ++.++
T Consensus       171 -------------------------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~  221 (466)
T 1o6v_A          171 -------------------------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILT  221 (466)
T ss_dssp             -------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT
T ss_pred             -------------------------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccC
Confidence                                     1145567777777777777643  236777888888888888776544  66678


Q ss_pred             CCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecc
Q 036642          607 SLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA  686 (938)
Q Consensus       607 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  686 (938)
                      +|+.|++++|++++ ++.+..+++|+.|++++|++.+..|  +. .+++|+.|++++|++++..+  +..+++|+.|+++
T Consensus       222 ~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  295 (466)
T 1o6v_A          222 NLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELN  295 (466)
T ss_dssp             TCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence            88888888888775 3567778888888888888876544  33 68888888888888887544  7788899999999


Q ss_pred             ccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCc
Q 036642          687 DNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSG  766 (938)
Q Consensus       687 ~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g  766 (938)
                      +|++++..|  +..+++                                                  |+.|++++|++++
T Consensus       296 ~n~l~~~~~--~~~l~~--------------------------------------------------L~~L~L~~n~l~~  323 (466)
T 1o6v_A          296 ENQLEDISP--ISNLKN--------------------------------------------------LTYLTLYFNNISD  323 (466)
T ss_dssp             SSCCSCCGG--GGGCTT--------------------------------------------------CSEEECCSSCCSC
T ss_pred             CCcccCchh--hcCCCC--------------------------------------------------CCEEECcCCcCCC
Confidence            998886443  444333                                                  3788999999997


Q ss_pred             cCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCccccc
Q 036642          767 KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK  839 (938)
Q Consensus       767 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  839 (938)
                      ..|  ++.+++|+.|++++|.+++.  +.++++++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            666  78899999999999999975  478899999999999999998877  88999999999999999973

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.1e-35  Score=336.36  Aligned_cols=322  Identities=20%  Similarity=0.173  Sum_probs=159.9

Q ss_pred             EEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEeccccc
Q 036642          418 FIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQ  497 (938)
Q Consensus       418 ~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  497 (938)
                      .++.+++.++.+|..+  +..++.|++++|.+.+..+..|.++++|++|++++|.+++..|..+ ..+++|++|++++|+
T Consensus        15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCc
Confidence            4444455554444322  1233344444444433444455555555555555555554434332 334444444444444


Q ss_pred             ccccCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccch
Q 036642          498 IHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTD  576 (938)
Q Consensus       498 l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~  576 (938)
                      ++...+ .+..+++|++|++++|.+.+..|                         ..+..+++|++|++++|.+++..+.
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~~~~  146 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLD-------------------------YMFQDLYNLKSLEVGDNDLVYISHR  146 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECT-------------------------TTTTTCTTCCEEEECCTTCCEECTT
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCCh-------------------------hHccccccCCEEECCCCccceeChh
Confidence            443332 12333333333333333222111                         1223345555555555555554455


Q ss_pred             hhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCc
Q 036642          577 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSR  655 (938)
Q Consensus       577 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~  655 (938)
                      .|.++++|++|++++|++++..+..+..+++|+.|+|++|.+.+..+ .+..+++|+.|++++|++.+.+|.        
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------  218 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP--------  218 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT--------
T ss_pred             hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc--------
Confidence            55555555555555555554444445555555555555555554444 445555555555555544444444        


Q ss_pred             ccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccc
Q 036642          656 MVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED  735 (938)
Q Consensus       656 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (938)
                                       ......+|+.|++++|++++..+..+..+++|                               
T Consensus       219 -----------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------  250 (477)
T 2id5_A          219 -----------------NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-------------------------------  250 (477)
T ss_dssp             -----------------TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-------------------------------
T ss_pred             -----------------ccccCccccEEECcCCcccccCHHHhcCcccc-------------------------------
Confidence                             33334455555555555553222333333332                               


Q ss_pred             eeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642          736 ALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE  815 (938)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  815 (938)
                                         +.|+|++|++++..+..+..+++|+.|+|++|++++..|..|+.+++|+.|||++|++++.
T Consensus       251 -------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  311 (477)
T 2id5_A          251 -------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL  311 (477)
T ss_dssp             -------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred             -------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence                               4555556665555555556666666666666666666666666666666666666666655


Q ss_pred             CCccccCCCCCCeEeCcCCcccccCCC
Q 036642          816 IPQSMSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       816 ip~~l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      .+..|..+++|++|++++|++.|.++.
T Consensus       312 ~~~~~~~l~~L~~L~l~~N~l~c~c~~  338 (477)
T 2id5_A          312 EESVFHSVGNLETLILDSNPLACDCRL  338 (477)
T ss_dssp             CGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred             CHhHcCCCcccCEEEccCCCccCccch
Confidence            555556666666666666666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.7e-33  Score=321.91  Aligned_cols=344  Identities=22%  Similarity=0.296  Sum_probs=156.5

Q ss_pred             CCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEe
Q 036642          117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLD  196 (938)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  196 (938)
                      ++++.|+++++.+..  +|. +..+++|++|++++|.+++..|  ++++++|++|++++|.+....+  +.++++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            344455555544442  232 3444455555555555443322  4455555555555554443332  44444555555


Q ss_pred             CCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCc
Q 036642          197 LSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN  276 (938)
Q Consensus       197 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  276 (938)
                      +++|.++..+.    +..+++|++|++++|.+++++  .+.++++|++|+++ |.+.+   ...+.++++|++|++++|.
T Consensus       119 L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~---~~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          119 LFNNQITDIDP----LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTD---LKPLANLTTLERLDISSNK  188 (466)
T ss_dssp             CCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCC---CGGGTTCTTCCEEECCSSC
T ss_pred             CCCCCCCCChH----HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccC---chhhccCCCCCEEECcCCc
Confidence            55544444321    444455555555555544432  24455555555553 22322   1124455555555555555


Q ss_pred             ccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhH
Q 036642          277 FQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI  356 (938)
Q Consensus       277 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  356 (938)
                      +++.  ..+..+++|++|++++|.+++..|  ++.+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence            4432  224455555555555555544333  44455555555555555432  234445555555555554444322  


Q ss_pred             HHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCc
Q 036642          357 FDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP  436 (938)
Q Consensus       357 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  436 (938)
                          +..++ +|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++.++ +...
T Consensus       261 ----~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l  330 (466)
T 1o6v_A          261 ----LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSL  330 (466)
T ss_dssp             ----GTTCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGC
T ss_pred             ----hhcCC-CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccC
Confidence                11222 45555555555444333  4455556666666665554332  4555556666666555554322 1222


Q ss_pred             cccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccc
Q 036642          437 FQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHG  500 (938)
Q Consensus       437 ~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  500 (938)
                      .+|+.|++++|.+.+.  ..+..+++|+.|++++|++++..|   ...+++|+.|++++|.+++
T Consensus       331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC
T ss_pred             ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC
Confidence            2233333333333221  234444444555555544444433   2334444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.5e-34  Score=313.25  Aligned_cols=257  Identities=29%  Similarity=0.530  Sum_probs=239.8

Q ss_pred             CCcceeeccCccCCC--ccchhhhcCCCCCEEEcCC-CcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcE
Q 036642          558 KKLQFLYLRGNFLQG--ELTDCWMNYQNLMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLT  633 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~  633 (938)
                      .++++|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|+|++|++++.+| .+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            578899999999998  8999999999999999995 99999999999999999999999999998888 8999999999


Q ss_pred             EECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCC-ccCeeeccccccccccchhhhcchhhhhcccccc
Q 036642          634 LDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAG  712 (938)
Q Consensus       634 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~  712 (938)
                      |++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|++++.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999999999887 799999999999999999999999998 999999999999999998887654 3        


Q ss_pred             chhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccC
Q 036642          713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI  792 (938)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i  792 (938)
                                                                +.|++++|++++.+|..++.+++|+.|+|++|.+++.+
T Consensus       200 ------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          200 ------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             ------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             ------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence                                                      78999999999999999999999999999999999877


Q ss_pred             CccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCC-CCCCCCCCCCC
Q 036642          793 PESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNC  868 (938)
Q Consensus       793 p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c  868 (938)
                      |. ++.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..+++..+....+.+| .+||.|+. .|
T Consensus       238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            76 88999999999999999999999999999999999999999999999988999999999999 79998876 57

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=323.19  Aligned_cols=310  Identities=22%  Similarity=0.179  Sum_probs=271.9

Q ss_pred             cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccC
Q 036642          108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP  187 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~  187 (938)
                      .+|..+.  +++++|||++|.++++ .|..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+.......|.
T Consensus        25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  101 (477)
T 2id5_A           25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT  101 (477)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred             cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence            4565554  4899999999999975 567899999999999999999988899999999999999999999988888899


Q ss_pred             CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCC
Q 036642          188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQL  267 (938)
Q Consensus       188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  267 (938)
                      ++++|++|++++|.++....  ..+..+++|++|++++|.++++.+..|.++++|++|++++|.+++.. +..+..+++|
T Consensus       102 ~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L  178 (477)
T 2id5_A          102 GLSNLTKLDISENKIVILLD--YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGL  178 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTC
T ss_pred             CCCCCCEEECCCCccccCCh--hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCC
Confidence            99999999999999987633  57888999999999999999999999999999999999999998744 6678999999


Q ss_pred             CEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCC
Q 036642          268 VFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV  347 (938)
Q Consensus       268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  347 (938)
                      +.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|.+++..+..+..+++|+.|++++|
T Consensus       179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            99999999999888888999999999999999988888888877889999999999999877788999999999999999


Q ss_pred             cCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCC
Q 036642          348 KLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELN  427 (938)
Q Consensus       348 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  427 (938)
                      .+.+..+.    .+..++ +|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|++.
T Consensus       259 ~l~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          259 PISTIEGS----MLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CCCEECTT----SCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cCCccChh----hccccc-cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            98877665    444555 7888888888888888888888888888888888888777777888888888888888876


Q ss_pred             C
Q 036642          428 G  428 (938)
Q Consensus       428 ~  428 (938)
                      .
T Consensus       334 c  334 (477)
T 2id5_A          334 C  334 (477)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.8e-32  Score=306.24  Aligned_cols=312  Identities=18%  Similarity=0.169  Sum_probs=226.0

Q ss_pred             cCCCCCCEEeCCCCCCCCCcccc-cccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCC
Q 036642          114 LDLKHLSYLDLSYNDFQGVQIPR-FICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL  192 (938)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L  192 (938)
                      ..++++++|+++++.++.  +|. .+..+++|++|++++|.+++..+..|+++++|++|++++|.+....+..|.++++|
T Consensus        42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            357899999999999984  555 47889999999999999998888899999999999999999999888899999999


Q ss_pred             CEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642          193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL  272 (938)
Q Consensus       193 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  272 (938)
                      ++|++++|.++.++.  ..+..+++|++|++++|.++++++..+.++++|++|++++|.+++.    .+..+++|++|++
T Consensus       120 ~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l  193 (390)
T 3o6n_A          120 TVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANV  193 (390)
T ss_dssp             CEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEEC
T ss_pred             CEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceeec
Confidence            999999999987654  4567899999999999999999888899999999999999988753    3566788999999


Q ss_pred             cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccc
Q 036642          273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQE  352 (938)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  352 (938)
                      ++|.+++     +...++|++|++++|.+... |..  ..++|++|++++|.+++.  ..+..+++|+.|++++|.+.+.
T Consensus       194 ~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~  263 (390)
T 3o6n_A          194 SYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI  263 (390)
T ss_dssp             CSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred             ccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc
Confidence            9988764     33456888899988888753 332  346788888888888764  4567777777777777766665


Q ss_pred             hhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCC
Q 036642          353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDN  432 (938)
Q Consensus       353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  432 (938)
                      .|.    .+..++ +|+.|++++|.+++. +..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.+   
T Consensus       264 ~~~----~~~~l~-~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~---  333 (390)
T 3o6n_A          264 MYH----PFVKMQ-RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---  333 (390)
T ss_dssp             ESG----GGTTCS-SCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---
T ss_pred             Chh----Hccccc-cCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee---
Confidence            544    223333 455555555554432 223344445555555555444 2333444444555555555444432   


Q ss_pred             CCCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccc
Q 036642          433 WIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS  476 (938)
Q Consensus       433 ~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  476 (938)
                                           +  +..+++|++|++++|++...
T Consensus       334 ---------------------~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          334 ---------------------K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             ---------------------C--CCTTCCCSEEECCSSCEEHH
T ss_pred             ---------------------C--chhhccCCEEEcCCCCccch
Confidence                                 1  34556677777777766643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.5e-32  Score=302.74  Aligned_cols=329  Identities=21%  Similarity=0.196  Sum_probs=263.6

Q ss_pred             CCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCC---CCCCcEE
Q 036642          460 QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLI---SSNLIEL  535 (938)
Q Consensus       460 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L  535 (938)
                      +++++.|++++|.++ .+|..++..+++|++|++++|.+++..+ .+..+++|++|++++|.+.+..|..   +++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            467777888887776 5666666777888888888888877666 6777788888888888887766653   5678888


Q ss_pred             EccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccc
Q 036642          536 DFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK  615 (938)
Q Consensus       536 ~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  615 (938)
                      ++++|.++...+    ..+..+++|++|++++|++++..+..+.++++|++|++++|++++.   .++.+++|+.|++++
T Consensus       123 ~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          123 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY  195 (390)
T ss_dssp             ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred             ECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence            888888774322    2246689999999999999988888899999999999999999864   356788999999999


Q ss_pred             ccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642          616 NNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP  695 (938)
Q Consensus       616 n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  695 (938)
                      |.+++    +...++|++|++++|.+... |..   ..++|+.|++++|++++.  ..+..+++|+.|++++|.+++..|
T Consensus       196 n~l~~----~~~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~  265 (390)
T 3o6n_A          196 NLLST----LAIPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY  265 (390)
T ss_dssp             SCCSE----EECCSSCSEEECCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred             ccccc----cCCCCcceEEECCCCeeeec-ccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence            98875    34456899999999998763 433   357899999999999874  578899999999999999998888


Q ss_pred             hhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCc
Q 036642          696 RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNL  775 (938)
Q Consensus       696 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l  775 (938)
                      ..+..+++|                                                  +.|++++|++++ +|..++.+
T Consensus       266 ~~~~~l~~L--------------------------------------------------~~L~L~~n~l~~-~~~~~~~l  294 (390)
T 3o6n_A          266 HPFVKMQRL--------------------------------------------------ERLYISNNRLVA-LNLYGQPI  294 (390)
T ss_dssp             GGGTTCSSC--------------------------------------------------CEEECCSSCCCE-EECSSSCC
T ss_pred             hHccccccC--------------------------------------------------CEEECCCCcCcc-cCcccCCC
Confidence            888777665                                                  789999999985 78888899


Q ss_pred             cCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcC
Q 036642          776 KALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYA  855 (938)
Q Consensus       776 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~  855 (938)
                      ++|+.|+|++|+++ .+|..++.+++|+.|++++|+++.. |  +..+++|++|++++|++.|.... ..++.+....+.
T Consensus       295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~  369 (390)
T 3o6n_A          295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVD  369 (390)
T ss_dssp             TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBC
T ss_pred             CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhccc
Confidence            99999999999999 6788899999999999999999864 3  77889999999999999986433 233444444455


Q ss_pred             CC-CCCCC
Q 036642          856 GN-DLCGA  862 (938)
Q Consensus       856 ~n-~lc~~  862 (938)
                      ++ ..|..
T Consensus       370 ~~~~~c~~  377 (390)
T 3o6n_A          370 DADQHCKI  377 (390)
T ss_dssp             CCCSCCCT
T ss_pred             ccCceecc
Confidence            55 55543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.7e-31  Score=316.45  Aligned_cols=312  Identities=18%  Similarity=0.155  Sum_probs=224.1

Q ss_pred             CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642          115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD  194 (938)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  194 (938)
                      .+++++.|++++|.+..+ .+..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+....+..|.++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            567899999999999853 3345788999999999999999888889999999999999999999988888999999999


Q ss_pred             EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642          195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR  274 (938)
Q Consensus       195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  274 (938)
                      |++++|.++.++.  ..+..+++|++|++++|.++++++..|.++++|++|++++|.+.+.    .+..+++|++|++++
T Consensus       128 L~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          128 LVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSY  201 (597)
T ss_dssp             EECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCSEEECCS
T ss_pred             EEeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhhhhhccc
Confidence            9999999887654  4568889999999999999999888899999999999999988763    256678889999998


Q ss_pred             CcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchh
Q 036642          275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEIS  354 (938)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  354 (938)
                      |.+++     +...++|++|++++|.+....+ .+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+.+|
T Consensus       202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~  271 (597)
T 3oja_B          202 NLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY  271 (597)
T ss_dssp             SCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred             Ccccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH
Confidence            88764     3445678888888888874332 22  35788888888888763  556677777777777766666555


Q ss_pred             hHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCC
Q 036642          355 EIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI  434 (938)
Q Consensus       355 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  434 (938)
                      .    .++.++ +|+.|++++|.+++. |..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++++     
T Consensus       272 ~----~~~~l~-~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-----  339 (597)
T 3oja_B          272 H----PFVKMQ-RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-----  339 (597)
T ss_dssp             G----GGTTCS-SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-----
T ss_pred             H----HhcCcc-CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-----
Confidence            4    233333 455555555555442 333344455555555555554 2344444445555555555544432     


Q ss_pred             CccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccc
Q 036642          435 PPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS  476 (938)
Q Consensus       435 ~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  476 (938)
                                         +  +..+++|+.|++++|.+.+.
T Consensus       340 -------------------~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          340 -------------------K--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             -------------------C--CCTTCCCSEEECCSSCEEHH
T ss_pred             -------------------C--hhhcCCCCEEEeeCCCCCCh
Confidence                               1  34456666667766666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.8e-32  Score=318.88  Aligned_cols=330  Identities=21%  Similarity=0.200  Sum_probs=267.9

Q ss_pred             CCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCC---CCCCcEE
Q 036642          460 QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLI---SSNLIEL  535 (938)
Q Consensus       460 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L  535 (938)
                      +.+++.+++++|.+. .+|..++..+++|+.|++++|.+++..+ .+..+++|++|++++|.+.+..|..   +++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456777777777776 4555556667777777777777777666 6777777888888888777766643   5677888


Q ss_pred             EccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccc
Q 036642          536 DFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK  615 (938)
Q Consensus       536 ~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  615 (938)
                      ++++|.+++..+    ..++.+++|++|++++|.+++..|..|.++++|+.|++++|.+++. +  ++.+++|+.|++++
T Consensus       129 ~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~  201 (597)
T 3oja_B          129 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSY  201 (597)
T ss_dssp             ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCS
T ss_pred             EeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhccc
Confidence            888887775333    2346789999999999999998888999999999999999999865 2  56688999999999


Q ss_pred             ccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642          616 NNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP  695 (938)
Q Consensus       616 n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  695 (938)
                      |.+++    +...++|+.|++++|.+.. +|..   ..++|+.|++++|++++  +..+..+++|+.|++++|.+++.+|
T Consensus       202 n~l~~----l~~~~~L~~L~ls~n~l~~-~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~  271 (597)
T 3oja_B          202 NLLST----LAIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY  271 (597)
T ss_dssp             SCCSE----EECCTTCSEEECCSSCCCE-EECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred             Ccccc----ccCCchhheeeccCCcccc-cccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence            98875    3455689999999999865 3332   24789999999999997  4788999999999999999999989


Q ss_pred             hhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCc
Q 036642          696 RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNL  775 (938)
Q Consensus       696 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l  775 (938)
                      ..+..+++|                                                  +.|+|++|++++ +|..++.+
T Consensus       272 ~~~~~l~~L--------------------------------------------------~~L~Ls~N~l~~-l~~~~~~l  300 (597)
T 3oja_B          272 HPFVKMQRL--------------------------------------------------ERLYISNNRLVA-LNLYGQPI  300 (597)
T ss_dssp             GGGTTCSSC--------------------------------------------------CEEECTTSCCCE-EECSSSCC
T ss_pred             HHhcCccCC--------------------------------------------------CEEECCCCCCCC-CCcccccC
Confidence            888877766                                                  789999999996 78888899


Q ss_pred             cCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcC
Q 036642          776 KALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYA  855 (938)
Q Consensus       776 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~  855 (938)
                      ++|+.|+|++|.++ .+|..++.+++|+.|||++|++++. |  +..+++|++|++++|+++|.++. ..+..+....+.
T Consensus       301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~  375 (597)
T 3oja_B          301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVD  375 (597)
T ss_dssp             TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBC
T ss_pred             CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccc
Confidence            99999999999999 7899999999999999999999865 3  67788999999999999987543 245666666677


Q ss_pred             CC-CCCCCC
Q 036642          856 GN-DLCGAP  863 (938)
Q Consensus       856 ~n-~lc~~~  863 (938)
                      ++ ..|+.+
T Consensus       376 ~~~~~C~~~  384 (597)
T 3oja_B          376 DADQHCKID  384 (597)
T ss_dssp             CCCCCCCTT
T ss_pred             cccccCCcc
Confidence            87 788764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3e-30  Score=284.98  Aligned_cols=286  Identities=24%  Similarity=0.254  Sum_probs=193.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCC
Q 036642          113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL  192 (938)
Q Consensus       113 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L  192 (938)
                      +..+++|++|+++++.+..  +|. +..+++|++|++++|.+++..+  +.++++|++|++++|.+...  ..+.++++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            4467788999999888874  443 7788899999999988885433  88888899999988887764  457888888


Q ss_pred             CEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642          193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL  272 (938)
Q Consensus       193 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  272 (938)
                      ++|++++|.++..+.    +..+++|++|++++|......+ .+..+++|++|++++|.+.+..   .+..+++|++|++
T Consensus       113 ~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l  184 (347)
T 4fmz_A          113 RELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSL  184 (347)
T ss_dssp             SEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEEC
T ss_pred             CEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEc
Confidence            888888888877643    6678888888888885544433 3777888888888888776632   2677788888888


Q ss_pred             cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccc
Q 036642          273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQE  352 (938)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  352 (938)
                      ++|.+.+. +. +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+.
T Consensus       185 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          185 NYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             TTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             cCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence            88877643 22 6777788888888887775444  6777788888888887776544  66777777777777766553


Q ss_pred             hhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCC
Q 036642          353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNG  428 (938)
Q Consensus       353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  428 (938)
                       +     .+..++ +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus       259 -~-----~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          259 -N-----AVKDLT-KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             -G-----GGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             -h-----hHhcCC-CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence             1     122222 455555555554443  224445555555555555554444445555555555555554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=5e-32  Score=295.21  Aligned_cols=277  Identities=20%  Similarity=0.217  Sum_probs=180.5

Q ss_pred             CcHHHHHHHHHhhhcCC-CCCCCCCCC----CCCCCCccccceeeCC--------CCCcEEEEecCCCCCccCCccCCCC
Q 036642           34 CLESERRALLRFKQDLQ-DPSNRLASW----IGYEDCCAWAGVVCDN--------VTGHIVELNLRNPFTYCDLSQSKAN  100 (938)
Q Consensus        34 ~~~~~~~~ll~~k~~~~-~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~~~~~~~~~~~~  100 (938)
                      +..+|++||++||+++. |+.+.+.+|    ....++|.|.|+.|+.        ...+|+.++|++.            
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n------------   91 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV------------   91 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS------------
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC------------
Confidence            56789999999999984 776666788    3447899999999952        3468889999873            


Q ss_pred             CCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccc
Q 036642          101 PRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYV  180 (938)
Q Consensus       101 ~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~  180 (938)
                         .+. .+|+.++++++|++|+|++|.++  .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|++..
T Consensus        92 ---~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~  164 (328)
T 4fcg_A           92 ---PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT  164 (328)
T ss_dssp             ---CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC
T ss_pred             ---Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc
Confidence               333 78888888999999999999988  47888889999999999999988 778889999999999999877655


Q ss_pred             cCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCccc
Q 036642          181 ENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNW  260 (938)
Q Consensus       181 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  260 (938)
                      ..+..+..      ..           ....+..+++|++|++++|+++.+ |..+.++++|++|++++|.+.+  ++..
T Consensus       165 ~~p~~~~~------~~-----------~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~--l~~~  224 (328)
T 4fcg_A          165 ELPEPLAS------TD-----------ASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSA--LGPA  224 (328)
T ss_dssp             CCCSCSEE------EC------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCC--CCGG
T ss_pred             ccChhHhh------cc-----------chhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCc--Cchh
Confidence            54443332      00           001122344444444444444432 2234555555555555555543  2344


Q ss_pred             ccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCC
Q 036642          261 VFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR  340 (938)
Q Consensus       261 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  340 (938)
                      +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|+
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             eeecCCCcC
Q 036642          341 SVMLSCVKL  349 (938)
Q Consensus       341 ~L~L~~n~l  349 (938)
                      .+++..+.+
T Consensus       305 ~l~l~~~~~  313 (328)
T 4fcg_A          305 IILVPPHLQ  313 (328)
T ss_dssp             EEECCGGGS
T ss_pred             EEeCCHHHH
Confidence            555554433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.2e-29  Score=280.04  Aligned_cols=307  Identities=20%  Similarity=0.294  Sum_probs=208.6

Q ss_pred             ccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCC
Q 036642          138 ICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS  217 (938)
Q Consensus       138 l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~  217 (938)
                      +..+++|++|++++|.+.. +| .+..+++|++|++++|.+.....  +..+++|++|++++|.++.++    .+..+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~----~~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS----ALQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTT
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch----HHcCCCc
Confidence            4578899999999999884 44 48889999999999998876654  888888888888888887753    4777888


Q ss_pred             CcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECc
Q 036642          218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLD  297 (938)
Q Consensus       218 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  297 (938)
                      |++|++++|.++++++  +..+++|++|++++|.....  ...+..+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~  185 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD--LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN  185 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC--CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred             CCEEECcCCcccCchh--hccCCceeEEECCCCCCccc--ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence            8888888888877755  77788888888888754432  3346777777777777777764332  6677777777777


Q ss_pred             CCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCc
Q 036642          298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSS  377 (938)
Q Consensus       298 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  377 (938)
                      +|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+                          
T Consensus       186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~--------------------------  235 (347)
T 4fmz_A          186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--------------------------  235 (347)
T ss_dssp             TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--------------------------
T ss_pred             CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC--------------------------
Confidence            777764333  6667777777777777665443  5555555555555555443                          


Q ss_pred             CccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCccc
Q 036642          378 VSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWL  457 (938)
Q Consensus       378 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l  457 (938)
                         ..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++++                         .+
T Consensus       236 ---~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-------------------------~~  283 (347)
T 4fmz_A          236 ---LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-------------------------VL  283 (347)
T ss_dssp             ---CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-------------------------GG
T ss_pred             ---Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-------------------------hh
Confidence               322  56677777888888777753  35777778888888887776531                         24


Q ss_pred             CCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCc
Q 036642          458 HSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS  522 (938)
Q Consensus       458 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~  522 (938)
                      ..+++|++|++++|.+++..+..+ ..+++|+.|++++|++++..| +..+++|++|++++|.++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             cCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence            445556666666666654444433 445666666666666665544 555666666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.2e-33  Score=323.16  Aligned_cols=308  Identities=18%  Similarity=0.129  Sum_probs=167.1

Q ss_pred             cCCCCCCcEEEccCcccccccchhHhhcCc----CccEEecccccccc----cCC-CccccccCceeecCCccCccCCC-
Q 036642          457 LHSQKHLNYLDLSYSGITGSIPNIFWSSAS----QIYVLDLSFNQIHG----QIP-NLTNAAQLEVLSLGSNSFSGALP-  526 (938)
Q Consensus       457 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~----~L~~L~Ls~n~l~~----~~~-~l~~~~~L~~L~L~~n~l~~~~p-  526 (938)
                      +..+++|++|++++|.+.+..+..+...++    +|++|++++|+++.    .++ .+..+++|++|++++|.+.+..+ 
T Consensus        52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  131 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ  131 (461)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred             HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence            334444444444444444433333333333    35555555555442    112 34444555555555555442111 


Q ss_pred             -------CCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhh-----cCCCCCEEEcCCCcc
Q 036642          527 -------LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWM-----NYQNLMILDLSNNKF  594 (938)
Q Consensus       527 -------~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l  594 (938)
                             ...++|++|++++|.+++.....+...+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+
T Consensus       132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence                   11235666666666666655555555566667777777777776654443332     245677777777776


Q ss_pred             ccc----CCcccCCCCCCcEEEcccccccccc-----c-ccccCcCCcEEECCCCccCCC----CChhHhhhcCcccEEe
Q 036642          595 TGN----LPISLGSLISLQSLHLRKNNLSGTI-----H-SLKNCTALLTLDVGENEFVEN----IPTWIGERFSRMVVLI  660 (938)
Q Consensus       595 ~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----~-~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~~l~~L~~L~  660 (938)
                      ++.    ++..+..+++|++|++++|.+++..     + ....+++|++|++++|.+++.    ++..+. .+++|++|+
T Consensus       212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~  290 (461)
T 1z7x_W          212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELS  290 (461)
T ss_dssp             BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEE
T ss_pred             cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEE
Confidence            643    3555556677777777777665431     1 222456666777776666543    343333 456666666


Q ss_pred             eCCCcccccCCccccC-----CCccCeeecccccccccc----chhhhcchhhhhccccccchhhhhhhhccCCCcchhh
Q 036642          661 LRSNKFHSLLPKGLCD-----LAFLQIVDLADNNLSGEV----PRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAM  731 (938)
Q Consensus       661 L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  731 (938)
                      +++|++++..+..+..     .++|+.|++++|.+++..    |..+..+                              
T Consensus       291 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~------------------------------  340 (461)
T 1z7x_W          291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN------------------------------  340 (461)
T ss_dssp             CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC------------------------------
T ss_pred             CCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC------------------------------
Confidence            6666665443333322     246666666666665432    2222222                              


Q ss_pred             cccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccC-----ccCCCEEeCcCccCcc----cCCccccccCCC
Q 036642          732 LLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTN-----LKALQSFNLSNNFFTG----RIPESIGAMRSL  802 (938)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L  802 (938)
                                          +.|+.||+++|++++..+..+..     .++|+.|+|++|.+++    .+|..+..+++|
T Consensus       341 --------------------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          341 --------------------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             --------------------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             --------------------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence                                22356666666666544444432     4566777777776665    566666666677


Q ss_pred             CEEECCCCccccc
Q 036642          803 ESIDFSLNQLSGE  815 (938)
Q Consensus       803 ~~LdLs~N~l~~~  815 (938)
                      ++||+++|++++.
T Consensus       401 ~~L~l~~N~i~~~  413 (461)
T 1z7x_W          401 RELDLSNNCLGDA  413 (461)
T ss_dssp             CEEECCSSSCCHH
T ss_pred             cEEECCCCCCCHH
Confidence            7777777766654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.5e-32  Score=314.37  Aligned_cols=361  Identities=18%  Similarity=0.081  Sum_probs=158.0

Q ss_pred             CCCcEEEcCCCCCCCCCccc-ccCCCCCCEEECCCCCCCCc---cCcccccCCCCCCEEEccCCcccCCCCccccCCCCC
Q 036642          216 PSLVKLRLSRCQLHHLPPLA-IANFSTLTTLDLLYNQFDNS---FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSL  291 (938)
Q Consensus       216 ~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  291 (938)
                      ++|++|++++|+++...... +..+++|++|++++|.+++.   .++..+..+++|++|++++|.+..            
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~------------   70 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD------------   70 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH------------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh------------
Confidence            34556666666555443322 44555555555555555431   113334444555555555554443            


Q ss_pred             CEEECcCCcCCCccchhhh-cCC----CCCEEEccCCcCCc----hhhHhhhccCCCCeeecCCCcCccchhhHHHhhhc
Q 036642          292 KHLLLDSNRFNSSIPNWLY-RFN----RLESLGVSNNSLQG----RVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSG  362 (938)
Q Consensus       292 ~~L~L~~n~l~~~~p~~l~-~l~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  362 (938)
                                  ..+..+. .++    +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+...+.
T Consensus        71 ------------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           71 ------------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             ------------HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ------------HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence                        2222221 222    34455555554442    23444444555555555555444333322211111


Q ss_pred             ccccCccEEEccCCcCcccc----ccccCCCCCccEEEccCCeeccccccccc-----CCCCCcEEEccCccCCCCCCCC
Q 036642          363 CVSSGLEILVLRGSSVSGHL----TYKLGQFKNLYYLDLSNNSIVGPIPFSLG-----HLSTLQFIDLSYNELNGMNDNW  433 (938)
Q Consensus       363 ~~~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~  433 (938)
                      ...++|++|++++|.+++..    +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.++..... 
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-  217 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-  217 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-
T ss_pred             cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-
Confidence            11113445555544444322    23344455666666666665543333322     244566666665555432000 


Q ss_pred             CCccccceeecccccCCCCCCcccCCCCCCcEEEccCcccccccc----hhHhhcCcCccEEeccccccccc----CC-C
Q 036642          434 IPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIP----NIFWSSASQIYVLDLSFNQIHGQ----IP-N  504 (938)
Q Consensus       434 ~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~-~  504 (938)
                                        .++..+..+++|++|++++|.+++...    ..++..+++|++|++++|.++..    ++ .
T Consensus       218 ------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          218 ------------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             ------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ------------------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence                              123444555666666666666554322    12222345566666666655542    11 2


Q ss_pred             ccccccCceeecCCccCccCCC--------CCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccch
Q 036642          505 LTNAAQLEVLSLGSNSFSGALP--------LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTD  576 (938)
Q Consensus       505 l~~~~~L~~L~L~~n~l~~~~p--------~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~  576 (938)
                      +..+++|++|++++|.+.+..+        ...++|++|++++|.+++.....++..+..+++|++|++++|.+++..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            3334445555555444432111        11134444444444444433333333344444555555555544433332


Q ss_pred             hhhc-----CCCCCEEEcCCCcccc----cCCcccCCCCCCcEEEccccccc
Q 036642          577 CWMN-----YQNLMILDLSNNKFTG----NLPISLGSLISLQSLHLRKNNLS  619 (938)
Q Consensus       577 ~~~~-----l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~  619 (938)
                      .+..     .++|++|++++|.+++    .+|..+..+++|++|++++|+++
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            2221     3344444444444443    33334444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.6e-29  Score=274.12  Aligned_cols=290  Identities=21%  Similarity=0.250  Sum_probs=238.0

Q ss_pred             CCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEe
Q 036642          117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLD  196 (938)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  196 (938)
                      .++++++++++.++  .+|..+  .++|++|++++|.+++..|..|+++++|++|++++|.+....+..|.++++|++|+
T Consensus        33 c~l~~l~~~~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK--AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCS--SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCcc--ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            37899999999998  577765  37999999999999988888999999999999999999998889999999999999


Q ss_pred             CCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCC-ccCcccccCCCCCCEEEccCC
Q 036642          197 LSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN-SFVPNWVFGLIQLVFLDLRRN  275 (938)
Q Consensus       197 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n  275 (938)
                      +++|.++.++.   .+.  ++|++|++++|+++.+++..+.++++|++|++++|.++. ...+..+..+ +|++|++++|
T Consensus       109 L~~n~l~~l~~---~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          109 ISKNHLVEIPP---NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             CCSSCCCSCCS---SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             CCCCcCCccCc---ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            99999987654   222  799999999999999999999999999999999999863 1236667777 9999999999


Q ss_pred             cccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhh
Q 036642          276 NFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISE  355 (938)
Q Consensus       276 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  355 (938)
                      .+++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++. .+|.
T Consensus       183 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~  258 (332)
T 2ft3_A          183 KLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA  258 (332)
T ss_dssp             BCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred             CCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence            9985 565554  78999999999999888888999999999999999999888888999999999999999887 4444


Q ss_pred             HHHhhhcccccCccEEEccCCcCccccccccCC------CCCccEEEccCCeec--ccccccccCCCCCcEEEccCcc
Q 036642          356 IFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQ------FKNLYYLDLSNNSIV--GPIPFSLGHLSTLQFIDLSYNE  425 (938)
Q Consensus       356 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~  425 (938)
                          .+..++ +|+.|++++|.+++..+..+..      .+.|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       259 ----~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          259 ----GLPDLK-LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ----TGGGCT-TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ----hhhcCc-cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                334444 7888888888887766655543      356777888887776  5566677777777777777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.8e-29  Score=273.99  Aligned_cols=286  Identities=21%  Similarity=0.246  Sum_probs=211.2

Q ss_pred             CCcEEEccCcccccccchhHhhcCcCccEEecccccccccCC-CccccccCceeecCCccCccCCCCCCCCCcEEEccCC
Q 036642          462 HLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNN  540 (938)
Q Consensus       462 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n  540 (938)
                      +++.++++++.++ .+|..+   .++++.|++++|.+++..+ .+..+++|++|++++|.+++..|              
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------   95 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE--------------   95 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------------
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------------
Confidence            4566666666655 444433   2456666666666655544 45555555555555554443322              


Q ss_pred             ccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccc
Q 036642          541 SISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG  620 (938)
Q Consensus       541 ~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  620 (938)
                                 ..+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++..+..+..+++|+.|++++|.++.
T Consensus        96 -----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A           96 -----------KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             -----------GGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             -----------hHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence                       33456777888888888877 4444443  788888888888886666678888888888888888863


Q ss_pred             --ccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchh
Q 036642          621 --TIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRC  697 (938)
Q Consensus       621 --~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~  697 (938)
                        ..+ .+..+ +|+.|++++|++.+ +|..+   .++|++|++++|++++..+..+..+++|+.|++++|++++..|..
T Consensus       162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  236 (332)
T 2ft3_A          162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS  236 (332)
T ss_dssp             GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred             CCCCcccccCC-ccCEEECcCCCCCc-cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence              444 66666 88888888888876 66654   378999999999999888888999999999999999998877767


Q ss_pred             hhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccC
Q 036642          698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKA  777 (938)
Q Consensus       698 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~  777 (938)
                      +..+++|                                                  +.|++++|+++ .+|..++.+++
T Consensus       237 ~~~l~~L--------------------------------------------------~~L~L~~N~l~-~lp~~l~~l~~  265 (332)
T 2ft3_A          237 LSFLPTL--------------------------------------------------RELHLDNNKLS-RVPAGLPDLKL  265 (332)
T ss_dssp             GGGCTTC--------------------------------------------------CEEECCSSCCC-BCCTTGGGCTT
T ss_pred             hhCCCCC--------------------------------------------------CEEECCCCcCe-ecChhhhcCcc
Confidence            7666555                                                  78899999998 79999999999


Q ss_pred             CCEEeCcCccCcccCCcccccc------CCCCEEECCCCccc--ccCCccccCCCCCCeEeCcCCc
Q 036642          778 LQSFNLSNNFFTGRIPESIGAM------RSLESIDFSLNQLS--GEIPQSMSSLTYLNHLNLSNNN  835 (938)
Q Consensus       778 L~~L~Ls~N~l~~~ip~~~~~l------~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~  835 (938)
                      |+.|++++|.+++..+..|...      .+|+.|++++|++.  +..|..+..++.|+.+++++|+
T Consensus       266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            9999999999998777777653      67899999999988  6778889999999999999884

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.4e-28  Score=269.25  Aligned_cols=276  Identities=20%  Similarity=0.166  Sum_probs=144.5

Q ss_pred             cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccC
Q 036642          108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP  187 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~  187 (938)
                      .+|..+.  +++++|++++|.++++ .+..++++++|++|++++|.+++..|..|+++++|++|++++|++.......+ 
T Consensus        45 ~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-  120 (330)
T 1xku_A           45 KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-  120 (330)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-
T ss_pred             ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-
Confidence            4444443  4666666666666643 33356666666666666666666666666666666666666666654433222 


Q ss_pred             CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCC--CCcccccCCCCCCEEECCCCCCCCccCcccccCCC
Q 036642          188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH--LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLI  265 (938)
Q Consensus       188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  265 (938)
                        ++|++|++++|.++....  ..+.++++|++|++++|.+..  ..+..+.++++|++|++++|.+..  +|..+.  +
T Consensus       121 --~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~--~  192 (330)
T 1xku_A          121 --KTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQGLP--P  192 (330)
T ss_dssp             --TTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSSCC--T
T ss_pred             --ccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc--CCcccc--c
Confidence              455555555555554422  344555555555555555542  334445555555555555555543  122221  4


Q ss_pred             CCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecC
Q 036642          266 QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS  345 (938)
Q Consensus       266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  345 (938)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|+++
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence            5555555555555444445555555555555555555444444555555555555555544 333344444444444444


Q ss_pred             CCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccC------CCCCccEEEccCCeecc--cccccccCCCCCc
Q 036642          346 CVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLG------QFKNLYYLDLSNNSIVG--PIPFSLGHLSTLQ  417 (938)
Q Consensus       346 ~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~------~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~  417 (938)
                      +|.+++                             ..+..+.      ..+.++.+++++|.+..  ..|..|..+++++
T Consensus       272 ~N~i~~-----------------------------~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~  322 (330)
T 1xku_A          272 NNNISA-----------------------------IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  322 (330)
T ss_dssp             SSCCCC-----------------------------CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             CCcCCc-----------------------------cChhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence            444443                             3332222      23566667777776642  4455666667777


Q ss_pred             EEEccCcc
Q 036642          418 FIDLSYNE  425 (938)
Q Consensus       418 ~L~Ls~n~  425 (938)
                      .+++++|+
T Consensus       323 ~l~L~~N~  330 (330)
T 1xku_A          323 AVQLGNYK  330 (330)
T ss_dssp             GEEC----
T ss_pred             EEEecccC
Confidence            77776663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5.4e-28  Score=264.66  Aligned_cols=291  Identities=19%  Similarity=0.160  Sum_probs=235.5

Q ss_pred             CCccccceeeCCCC---------CcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcc
Q 036642           64 DCCAWAGVVCDNVT---------GHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQI  134 (938)
Q Consensus        64 ~~c~w~gv~c~~~~---------~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~  134 (938)
                      ..|.|+.+.|....         ..++.+++++.               .+.+..+..|.++++|++|+|++|.++++ .
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n---------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~   92 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN---------------KITEIKDGDFKNLKNLHTLILINNKISKI-S   92 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS---------------CCCCBCTTTTTTCTTCCEEECCSSCCCCB-C
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCC---------------cCCEeChhhhccCCCCCEEECCCCcCCee-C
Confidence            35789999997422         25677888773               55555556899999999999999999975 6


Q ss_pred             cccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCC
Q 036642          135 PRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNT  214 (938)
Q Consensus       135 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  214 (938)
                      |..++++++|++|++++|+++ .+|..+.  ++|++|++++|.+....+..|.++++|++|++++|.+......+..+..
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  169 (330)
T 1xku_A           93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG  169 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence            889999999999999999998 5666655  7999999999999988888899999999999999999765444567889


Q ss_pred             CCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEE
Q 036642          215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL  294 (938)
Q Consensus       215 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  294 (938)
                      +++|++|++++|.++.++...+   ++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus       170 l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  245 (330)
T 1xku_A          170 MKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  245 (330)
T ss_dssp             CTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             CCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence            9999999999999998876443   89999999999998755 7889999999999999999998888889999999999


Q ss_pred             ECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEcc
Q 036642          295 LLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLR  374 (938)
Q Consensus       295 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~  374 (938)
                      ++++|.++ .+|.++..+++|++|++++|++++..+..|......                       .....++.++++
T Consensus       246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~-----------------------~~~~~l~~l~l~  301 (330)
T 1xku_A          246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN-----------------------TKKASYSGVSLF  301 (330)
T ss_dssp             ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC-----------------------TTSCCCSEEECC
T ss_pred             ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc-----------------------cccccccceEee
Confidence            99999998 688899999999999999999998777666433100                       000145555555


Q ss_pred             CCcCcc--ccccccCCCCCccEEEccCCe
Q 036642          375 GSSVSG--HLTYKLGQFKNLYYLDLSNNS  401 (938)
Q Consensus       375 ~n~l~~--~~~~~l~~l~~L~~L~Ls~n~  401 (938)
                      +|.+..  ..|..+..+.+++.+++++|+
T Consensus       302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCcccccccCccccccccceeEEEecccC
Confidence            555542  345567788888888888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=9.1e-30  Score=302.90  Aligned_cols=439  Identities=13%  Similarity=0.013  Sum_probs=213.4

Q ss_pred             cCCccCCCCCCEEeCCCCCCC---CCccccc------------ccCCCCCcEEecCCCcCCCCCCcCCCCC--CcccEEE
Q 036642          110 NPSLLDLKHLSYLDLSYNDFQ---GVQIPRF------------ICSMGNLRYLNLSYTQFVGMIPPQLGNL--SNLQYLD  172 (938)
Q Consensus       110 ~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~------------l~~l~~L~~L~Ls~n~l~~~~p~~~~~L--~~L~~L~  172 (938)
                      +..+.++++|++|+|+++...   + .+|..            ...+++|++|+|++|.+++..+..+...  .+|++|+
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            344566777888888764321   1 01211            1145666666666665554444334332  2355555


Q ss_pred             CCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc----ccccCCCCCCEEECC
Q 036642          173 LSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP----LAIANFSTLTTLDLL  248 (938)
Q Consensus       173 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~L~  248 (938)
                      +++|.-                        .....+......+++|++|++++|.+++...    ..+..+++|++|+++
T Consensus       145 L~~~~~------------------------~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~  200 (592)
T 3ogk_B          145 LDKCSG------------------------FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY  200 (592)
T ss_dssp             EESCEE------------------------EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECT
T ss_pred             CcCCCC------------------------cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEee
Confidence            555431                        0111122222344555555555554443321    123344555555555


Q ss_pred             CCCCCCc---cCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCC---CccchhhhcCCCCCEEEccC
Q 036642          249 YNQFDNS---FVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN---SSIPNWLYRFNRLESLGVSN  322 (938)
Q Consensus       249 ~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~  322 (938)
                      +|.+++.   .++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+...   +..+..+..+++|+.|++++
T Consensus       201 ~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (592)
T 3ogk_B          201 MTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY  279 (592)
T ss_dssp             TCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT
T ss_pred             ccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc
Confidence            5554311   112333445555555555555543 4445555555555555532211   12223344455555555555


Q ss_pred             CcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCee
Q 036642          323 NSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSI  402 (938)
Q Consensus       323 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  402 (938)
                      +. .+.++..+..+++|++|++++|.+.+....                            ..+..+++|++|+++++..
T Consensus       280 ~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~----------------------------~~~~~~~~L~~L~L~~~~~  330 (592)
T 3ogk_B          280 MG-PNEMPILFPFAAQIRKLDLLYALLETEDHC----------------------------TLIQKCPNLEVLETRNVIG  330 (592)
T ss_dssp             CC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHH----------------------------HHHTTCTTCCEEEEEGGGH
T ss_pred             cc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHH----------------------------HHHHhCcCCCEEeccCccC
Confidence            32 223344444455555555555443322111                            1234556666666663322


Q ss_pred             cccccccccCCCCCcEEEccC-----------ccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEccCc
Q 036642          403 VGPIPFSLGHLSTLQFIDLSY-----------NELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYS  471 (938)
Q Consensus       403 ~~~~~~~l~~l~~L~~L~Ls~-----------n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n  471 (938)
                      .+.++.....+++|++|++++           +.+++.                      .++.....+++|++|+++.|
T Consensus       331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~~L~~L~l~~~  388 (592)
T 3ogk_B          331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----------------------GLIALAQGCQELEYMAVYVS  388 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----------------------HHHHHHHHCTTCSEEEEEES
T ss_pred             HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH----------------------HHHHHHhhCccCeEEEeecC
Confidence            223333345566677777762           222210                      01111233556666666666


Q ss_pred             ccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhh
Q 036642          472 GITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFIC  551 (938)
Q Consensus       472 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~  551 (938)
                      .+++..+..+...+++|+.|+++.+.                   ..|.+++...                    ...+.
T Consensus       389 ~l~~~~~~~l~~~~~~L~~L~l~~~~-------------------~~n~l~~~p~--------------------~~~~~  429 (592)
T 3ogk_B          389 DITNESLESIGTYLKNLCDFRLVLLD-------------------REERITDLPL--------------------DNGVR  429 (592)
T ss_dssp             CCCHHHHHHHHHHCCSCCEEEEEECS-------------------CCSCCSSCCC--------------------HHHHH
T ss_pred             CccHHHHHHHHhhCCCCcEEEEeecC-------------------CCccccCchH--------------------HHHHH
Confidence            66555554444445555555554211                   0111111000                    00111


Q ss_pred             hhhccCCCcceeeccCcc--CCCccchhhh-cCCCCCEEEcCCCcccc-cCCcccCCCCCCcEEEccccccccc-cc-cc
Q 036642          552 YRAHELKKLQFLYLRGNF--LQGELTDCWM-NYQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNLSGT-IH-SL  625 (938)
Q Consensus       552 ~~l~~l~~L~~L~ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~-~~-~l  625 (938)
                      ..+..+++|++|++++|.  +++..+..+. .+++|++|++++|++++ .++..+..+++|++|+|++|.+++. ++ ..
T Consensus       430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence            223346667777775432  4544444443 36777777777777764 3344456677777777777776543 23 34


Q ss_pred             ccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC
Q 036642          626 KNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN  664 (938)
Q Consensus       626 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n  664 (938)
                      ..+++|++|++++|++++.-...+.+.++.+....+..+
T Consensus       510 ~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            567777777777777766544445555666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.2e-28  Score=268.15  Aligned_cols=276  Identities=20%  Similarity=0.189  Sum_probs=197.1

Q ss_pred             CceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcC
Q 036642          511 LEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLS  590 (938)
Q Consensus       511 L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls  590 (938)
                      ....+.+++.++.......++|++|++++|.+++..+    ..+..+++|++|++++|++++..|..+.++++|++|+++
T Consensus        33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEeeCCCCCcccccccccccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            3345555555554433344566666666666665332    234567777888888887777667777777788888888


Q ss_pred             CCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEEECCCCccCCCC-ChhHhhhcCcccEEeeCCCccc
Q 036642          591 NNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENEFVENI-PTWIGERFSRMVVLILRSNKFH  667 (938)
Q Consensus       591 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~~l~~L~~L~L~~n~l~  667 (938)
                      +|++++..+..++.+++|++|++++|++++..+  .+.++++|++|++++|+..+.+ |..+. .+++|++|++++|+++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQ  187 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCC
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcC
Confidence            887775544457777788888888887776544  5677777778887777433334 33343 6777888888888887


Q ss_pred             ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhh
Q 036642          668 SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEY  747 (938)
Q Consensus       668 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (938)
                      +..|..+..+++|+.|++++|.+. .+|..+.                                                
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~------------------------------------------------  218 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV------------------------------------------------  218 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCST-THHHHHH------------------------------------------------
T ss_pred             ccCHHHHhccccCCeecCCCCccc-cchhhhh------------------------------------------------
Confidence            777777777888888888887765 3332211                                                


Q ss_pred             hhhccceeEEEeecCccCccCchhcc---CccCCCEEeCcCccCcc----cCCccccccCCCCEEECCCCcccccCCcc-
Q 036642          748 KCILNLVRIIDFSKNNFSGKIPLEVT---NLKALQSFNLSNNFFTG----RIPESIGAMRSLESIDFSLNQLSGEIPQS-  819 (938)
Q Consensus       748 ~~~~~~l~~L~Ls~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-  819 (938)
                       ..++.|+.|++++|++++..+..+.   ....++.++|++|.+++    .+|+.++.+++|++||+++|+++ .+|.. 
T Consensus       219 -~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~  296 (353)
T 2z80_A          219 -DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI  296 (353)
T ss_dssp             -HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             -hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence             1233458899999999976655543   46778889999999886    47888999999999999999999 56766 


Q ss_pred             ccCCCCCCeEeCcCCcccccCCC
Q 036642          820 MSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       820 l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      +.++++|++|++++|+++|.+|.
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HhcCCCCCEEEeeCCCccCcCCC
Confidence            58999999999999999999884

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=7.9e-28  Score=262.02  Aligned_cols=226  Identities=17%  Similarity=0.213  Sum_probs=190.2

Q ss_pred             CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEE
Q 036642          557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLD  635 (938)
Q Consensus       557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~  635 (938)
                      .+.+++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+| .+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467888888888888 67777888888888888888888 78888888888888888888888 445 888888888888


Q ss_pred             CCCCccCCCCChhHh--------hhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhc
Q 036642          636 VGENEFVENIPTWIG--------ERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL  707 (938)
Q Consensus       636 Ls~N~l~~~~p~~~~--------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  707 (938)
                      +++|++.+.+|..+.        ..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|+.+..+++|   
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---  231 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---  231 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence            888888888887664        13888899999998888 678888888899999999998884 66566665554   


Q ss_pred             cccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCcc
Q 036642          708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNF  787 (938)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~  787 (938)
                                                                     +.|++++|++.+.+|..++.+++|+.|+|++|.
T Consensus       232 -----------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          232 -----------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             -----------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred             -----------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence                                                           688899999988999999999999999999999


Q ss_pred             CcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCccc
Q 036642          788 FTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT  837 (938)
Q Consensus       788 l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  837 (938)
                      +.+.+|..++++++|+.|||++|++.+.+|.++.++++|+.+++..|.+.
T Consensus       265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999998877655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.7e-29  Score=298.86  Aligned_cols=81  Identities=17%  Similarity=0.077  Sum_probs=54.1

Q ss_pred             ceeEEEeecCccCc-cCchhccCccCCCEEeCcCccCccc-CCccccccCCCCEEECCCCcccccCCccc-cCCCCCCeE
Q 036642          753 LVRIIDFSKNNFSG-KIPLEVTNLKALQSFNLSNNFFTGR-IPESIGAMRSLESIDFSLNQLSGEIPQSM-SSLTYLNHL  829 (938)
Q Consensus       753 ~l~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L  829 (938)
                      .|+.|++++|++++ .++..+..+++|+.|+|++|.+++. ++..+..+++|++|+|++|+++..-...+ ..++.+...
T Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~  543 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE  543 (592)
T ss_dssp             TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred             cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence            35778888888876 3455567788888888888888755 34445677888888888888876533333 245555544


Q ss_pred             eCcC
Q 036642          830 NLSN  833 (938)
Q Consensus       830 ~ls~  833 (938)
                      .+..
T Consensus       544 ~~~~  547 (592)
T 3ogk_B          544 LIPS  547 (592)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            4443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.2e-27  Score=256.86  Aligned_cols=235  Identities=21%  Similarity=0.225  Sum_probs=183.5

Q ss_pred             CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccc--cCCcccCCCCCCcEEEcccccccccccccccCcCCcEEE
Q 036642          558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTG--NLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLD  635 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~  635 (938)
                      ++|++|++++|+++...+..+.++++|++|++++|.++.  ..|..+..+++|++|++++|.+++.++.+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            456677777777764444456777777777777777763  235555667777777777777775444677777888888


Q ss_pred             CCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccccccc-ccchhhhcchhhhhccccccch
Q 036642          636 VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG-EVPRCIHNLRAMVTLNSHAGKA  714 (938)
Q Consensus       636 Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~l~~~~~~~  714 (938)
                      +++|++.+..+...+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++ .+|..+..+++|          
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----------  177 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL----------  177 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC----------
Confidence            888877664442223367888888888888888888888888999999999998886 567666666554          


Q ss_pred             hhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCc
Q 036642          715 IQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE  794 (938)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  794 (938)
                                                              +.|++++|++++..|..++.+++|+.|+|++|.+++..+.
T Consensus       178 ----------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  217 (306)
T 2z66_A          178 ----------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF  217 (306)
T ss_dssp             ----------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred             ----------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence                                                    7888999999988888899999999999999999987777


Q ss_pred             cccccCCCCEEECCCCcccccCCccccCC-CCCCeEeCcCCcccccCCC
Q 036642          795 SIGAMRSLESIDFSLNQLSGEIPQSMSSL-TYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       795 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip~  842 (938)
                      .++.+++|+.||+++|++++..|..+..+ ++|++|++++|+++|.++.
T Consensus       218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            88999999999999999999999999988 4899999999999987654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.7e-27  Score=257.77  Aligned_cols=274  Identities=20%  Similarity=0.246  Sum_probs=218.8

Q ss_pred             eeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCc--cchhhhcCCCCCEEEcC
Q 036642          513 VLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE--LTDCWMNYQNLMILDLS  590 (938)
Q Consensus       513 ~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~Ls  590 (938)
                      .++.+++.++......++++++|++++|.++...+    ..+..+++|++|++++|+++..  .+..+..+++|++|+++
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCH----hHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            44455555444333344567777777777664222    2346688899999999988733  36777788999999999


Q ss_pred             CCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccc
Q 036642          591 NNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHS  668 (938)
Q Consensus       591 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  668 (938)
                      +|.++ .+|..+..+++|++|++++|++++..+  .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++++
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccc
Confidence            99988 467778889999999999999987665  788899999999999999887777665 78999999999999987


Q ss_pred             -cCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhh
Q 036642          669 -LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEY  747 (938)
Q Consensus       669 -~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (938)
                       .+|..+..+++|+.|++++|.+++..|..+..+++|                                           
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------------------------------  201 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-------------------------------------------  201 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------------------------------
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-------------------------------------------
Confidence             688899999999999999999998878887776665                                           


Q ss_pred             hhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccccc-CCCCEEECCCCcccccCC--ccccCCC
Q 036642          748 KCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM-RSLESIDFSLNQLSGEIP--QSMSSLT  824 (938)
Q Consensus       748 ~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~~L~~LdLs~N~l~~~ip--~~l~~l~  824 (938)
                             +.|++++|++++..+..+..+++|+.|+|++|.+++..|..+..+ ++|+.|||++|++++..+  .....+.
T Consensus       202 -------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~  274 (306)
T 2z66_A          202 -------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  274 (306)
T ss_dssp             -------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred             -------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence                   789999999998777789999999999999999999999999998 599999999999987532  1222334


Q ss_pred             CCCeEeCcCCcccccCCC
Q 036642          825 YLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       825 ~L~~L~ls~N~l~g~ip~  842 (938)
                      ..+.+.+..+++.|..|.
T Consensus       275 ~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          275 DQRQLLVEVERMECATPS  292 (306)
T ss_dssp             HTGGGBSCGGGCBEEESG
T ss_pred             hhhhhhccccccccCCch
Confidence            455667778888888775

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.9e-26  Score=262.19  Aligned_cols=236  Identities=22%  Similarity=0.208  Sum_probs=207.8

Q ss_pred             cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccC
Q 036642          108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLP  187 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~  187 (938)
                      .+|..+.  +++++|+|++|.++++ .|..+.++++|++|+|++|.+++..|..|.++++|++|+|++|++.......|.
T Consensus        68 ~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  144 (452)
T 3zyi_A           68 EVPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE  144 (452)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred             ccCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence            4565554  5899999999999975 677899999999999999999988889999999999999999999998888899


Q ss_pred             CCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCC-CCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642          188 GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR-CQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ  266 (938)
Q Consensus       188 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  266 (938)
                      ++++|++|++++|.++.++.  ..+..+++|++|++++ +.+..+++..|.++++|++|++++|.+++   ...+..+++
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~~  219 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPS--YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---MPNLTPLVG  219 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---CCCCTTCTT
T ss_pred             ccCCCCEEECCCCCcceeCH--hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---ccccccccc
Confidence            99999999999999987653  5688899999999998 56777777789999999999999999986   345788899


Q ss_pred             CCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC
Q 036642          267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC  346 (938)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  346 (938)
                      |++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus       220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred             ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence            99999999999988888899999999999999999988888899999999999999999988888888889999999988


Q ss_pred             CcCcc
Q 036642          347 VKLSQ  351 (938)
Q Consensus       347 n~l~~  351 (938)
                      |.+..
T Consensus       300 Np~~C  304 (452)
T 3zyi_A          300 NPWNC  304 (452)
T ss_dssp             SCEEC
T ss_pred             CCcCC
Confidence            87654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.9e-26  Score=254.76  Aligned_cols=284  Identities=21%  Similarity=0.209  Sum_probs=200.3

Q ss_pred             cCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642          114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK  193 (938)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  193 (938)
                      ..++...+.|.+++.++  .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|+
T Consensus        28 ~~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             CEECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            34455566888899888  4677554  5899999999999877777899999999999999998888888888888888


Q ss_pred             EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc-ccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEc
Q 036642          194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP-LAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL  272 (938)
Q Consensus       194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  272 (938)
                      +|++++|.++.++.  ..+..+++|++|++++|+++.++. ..+.++++|++|++++|...+.+.+..+.++++|++|++
T Consensus       104 ~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          104 HLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             EEECCSSCCSSCCH--HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             EEECCCCcCCcCCH--hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            88888888887643  457778888888888888887776 677788888888888874323333566777777777777


Q ss_pred             cCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhh---ccCCCCeeecCCCcC
Q 036642          273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA---SLCNLRSVMLSCVKL  349 (938)
Q Consensus       273 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l  349 (938)
                      ++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+.   ..+.++.++++.+.+
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence            77777777777777777777777777777543333444577777777777777654433222   233344444444444


Q ss_pred             ccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeeccccccc-ccCCCCCcEEEccCccCCC
Q 036642          350 SQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS-LGHLSTLQFIDLSYNELNG  428 (938)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~  428 (938)
                      .+..-.                         .+|..+..+++|++|++++|+++. +|.. +..+++|++|++++|++.+
T Consensus       262 ~~~~l~-------------------------~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          262 TDESLF-------------------------QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CHHHHH-------------------------HHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCcchh-------------------------hhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC
Confidence            332111                         234456677788888888888774 4443 5778888888888887765


Q ss_pred             C
Q 036642          429 M  429 (938)
Q Consensus       429 ~  429 (938)
                      .
T Consensus       316 ~  316 (353)
T 2z80_A          316 S  316 (353)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.9e-27  Score=249.22  Aligned_cols=229  Identities=20%  Similarity=0.154  Sum_probs=158.9

Q ss_pred             ceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCC
Q 036642          561 QFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGEN  639 (938)
Q Consensus       561 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N  639 (938)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+ .+.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            45566666655 334322  3566777777777766666666667777777777777766655 6667777777777777


Q ss_pred             c-cCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhh
Q 036642          640 E-FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQ  718 (938)
Q Consensus       640 ~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~  718 (938)
                      + +.+..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|              
T Consensus        91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------  155 (285)
T 1ozn_A           91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------  155 (285)
T ss_dssp             TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence            6 4333344443 57777777777777777667777777777777777777775555555555544              


Q ss_pred             hhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccc
Q 036642          719 FLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGA  798 (938)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  798 (938)
                                                          +.|++++|++++..+..+..+++|+.|++++|.+++..|..|++
T Consensus       156 ------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  199 (285)
T 1ozn_A          156 ------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD  199 (285)
T ss_dssp             ------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ------------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence                                                66777777777555556777888888888888888777888888


Q ss_pred             cCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC
Q 036642          799 MRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS  843 (938)
Q Consensus       799 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  843 (938)
                      +++|+.||+++|++++..|..+..+++|++|++++|++.|.++..
T Consensus       200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~  244 (285)
T 1ozn_A          200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (285)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence            888888888888888766666778888888888888888776643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=8e-26  Score=258.60  Aligned_cols=230  Identities=21%  Similarity=0.239  Sum_probs=143.9

Q ss_pred             CcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECC
Q 036642          559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVG  637 (938)
Q Consensus       559 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls  637 (938)
                      ++++|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|+|++|++++.++ .+.++++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            34444555555544444455555555555555555555444555555555555555555554444 45555555555555


Q ss_pred             CCccCCCCChhHhhhcCcccEEeeCCC-cccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhh
Q 036642          638 ENEFVENIPTWIGERFSRMVVLILRSN-KFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQ  716 (938)
Q Consensus       638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~  716 (938)
                      +|++.+ +|...+..+++|+.|++++| .+....+..|..+++|+.|++++|++++ +| .+..++              
T Consensus       156 ~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~--------------  218 (452)
T 3zyi_A          156 NNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLV--------------  218 (452)
T ss_dssp             SCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCT--------------
T ss_pred             CCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccc--------------
Confidence            555543 22222224555555555553 3333333356667777777777777663 23 122222              


Q ss_pred             hhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccc
Q 036642          717 YQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI  796 (938)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~  796 (938)
                                                          .|+.|+|++|++++..|..+.++++|+.|+|++|++++..|..|
T Consensus       219 ------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  262 (452)
T 3zyi_A          219 ------------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF  262 (452)
T ss_dssp             ------------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ------------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence                                                23677888888887778888888888888888888888888888


Q ss_pred             cccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCC
Q 036642          797 GAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIP  841 (938)
Q Consensus       797 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  841 (938)
                      ..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus       263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            888888888888888887777777888888888888888887765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6.5e-26  Score=258.36  Aligned_cols=250  Identities=20%  Similarity=0.208  Sum_probs=153.0

Q ss_pred             CceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcC
Q 036642          511 LEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLS  590 (938)
Q Consensus       511 L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls  590 (938)
                      ...++.+++.++.......++++.|++++|++++..+    ..+..+++|++|++++|++++..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4455666655554433334455555555555544322    223344455555555555544444444445555555555


Q ss_pred             CCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC-cccc
Q 036642          591 NNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN-KFHS  668 (938)
Q Consensus       591 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n-~l~~  668 (938)
                      +|++++..+..|..+++|++|+|++|++++..+ .+.+                         +++|++|++++| .+..
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-------------------------l~~L~~L~l~~~~~l~~  175 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-------------------------IPSLRRLDLGELKRLSY  175 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT-------------------------CTTCCEEECCCCTTCCE
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhh-------------------------CcccCEeCCCCCCCcce
Confidence            555444333344444445555544444444333 3444                         555555555553 2222


Q ss_pred             cCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhh
Q 036642          669 LLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYK  748 (938)
Q Consensus       669 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  748 (938)
                      ..+..|..+++|+.|++++|.++ .+|. +..++                                              
T Consensus       176 i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~----------------------------------------------  207 (440)
T 3zyj_A          176 ISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI----------------------------------------------  207 (440)
T ss_dssp             ECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCS----------------------------------------------
T ss_pred             eCcchhhcccccCeecCCCCcCc-cccc-cCCCc----------------------------------------------
Confidence            23335666677777777777666 3332 22222                                              


Q ss_pred             hhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCe
Q 036642          749 CILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNH  828 (938)
Q Consensus       749 ~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  828 (938)
                          .|+.|||++|++++..|..+.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.
T Consensus       208 ----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          208 ----KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             ----SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             ----ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence                2367888888888777888888888888888888888888888888888888888888888877777888888888


Q ss_pred             EeCcCCcccccCC
Q 036642          829 LNLSNNNLTGKIP  841 (938)
Q Consensus       829 L~ls~N~l~g~ip  841 (938)
                      |++++|++.|.+.
T Consensus       284 L~L~~Np~~CdC~  296 (440)
T 3zyj_A          284 IHLHHNPWNCNCD  296 (440)
T ss_dssp             EECCSSCEECSST
T ss_pred             EEcCCCCccCCCC
Confidence            8999888888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=255.11  Aligned_cols=245  Identities=21%  Similarity=0.170  Sum_probs=184.9

Q ss_pred             CccEEecccccccccCCCccccccCceeecCCccCccCCCCC---CCCCcEEEccCCccccccchhhhhhhccCCCccee
Q 036642          487 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFL  563 (938)
Q Consensus       487 ~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L  563 (938)
                      ....++.+++.++..+..+.  +.++.|++++|++.+..+..   +++|++|++++|.+++..+    ..+..+++|++|
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~~~l~~L~~L  117 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI----GAFNGLANLNTL  117 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG----GGGTTCSSCCEE
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh----hhccCCccCCEE
Confidence            35678888888886555554  57999999999999877654   5789999999999987554    456779999999


Q ss_pred             eccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEEECCCCcc
Q 036642          564 YLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGENEF  641 (938)
Q Consensus       564 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~N~l  641 (938)
                      ++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+..+.++  .+.++++|++|++++|++
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            999999998777889999999999999999998888899999999999999966544444  677778888888887776


Q ss_pred             CCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhh
Q 036642          642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLL  721 (938)
Q Consensus       642 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~  721 (938)
                      .. +|.                          +..+++|+.|++++|++++..|..|..+++|                 
T Consensus       198 ~~-~~~--------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-----------------  233 (440)
T 3zyj_A          198 RE-IPN--------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHL-----------------  233 (440)
T ss_dssp             SS-CCC--------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTC-----------------
T ss_pred             cc-ccc--------------------------cCCCcccCEEECCCCccCccChhhhccCccC-----------------
Confidence            53 332                          3345555555555555555555555544443                 


Q ss_pred             ccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCC
Q 036642          722 YASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRS  801 (938)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~  801 (938)
                                                       +.|+|++|++++..|..+.++++|+.|+|++|++++..++.|..+++
T Consensus       234 ---------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          234 ---------------------------------QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             ---------------------------------CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred             ---------------------------------CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence                                             45566666666666666677777777777777777666666777777


Q ss_pred             CCEEECCCCcccc
Q 036642          802 LESIDFSLNQLSG  814 (938)
Q Consensus       802 L~~LdLs~N~l~~  814 (938)
                      |+.|+|++|++.+
T Consensus       281 L~~L~L~~Np~~C  293 (440)
T 3zyj_A          281 LERIHLHHNPWNC  293 (440)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             CCEEEcCCCCccC
Confidence            7777777777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.5e-27  Score=256.74  Aligned_cols=227  Identities=20%  Similarity=0.223  Sum_probs=151.1

Q ss_pred             cceeeccCccC-CCccchhhh-------cCCCCCEEEcCCCcccccCCccc--CCCCCCcEEEcccccccccccccccC-
Q 036642          560 LQFLYLRGNFL-QGELTDCWM-------NYQNLMILDLSNNKFTGNLPISL--GSLISLQSLHLRKNNLSGTIHSLKNC-  628 (938)
Q Consensus       560 L~~L~ls~n~l-~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~l~~l-  628 (938)
                      |++|++++|++ ...+|..+.       ++++|++|++++|++++.+|..+  ..+++|++|+|++|++++.+..+..+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            55555665555 233444443       45666666666666666666554  56666666666666666552244444 


Q ss_pred             ----cCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCccccc--CCccc--cCCCccCeeeccccccccccchhhhc
Q 036642          629 ----TALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSL--LPKGL--CDLAFLQIVDLADNNLSGEVPRCIHN  700 (938)
Q Consensus       629 ----~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~  700 (938)
                          ++|++|++++|++.+..|..+. .+++|++|++++|++.+.  .|..+  ..+++|+.|++++|++++ +|.... 
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~-  221 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCS-  221 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHH-
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHH-
Confidence                5666666666666554444444 566666666666665543  23333  667778888888887762 111000 


Q ss_pred             chhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCc-hhccCccCCC
Q 036642          701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP-LEVTNLKALQ  779 (938)
Q Consensus       701 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip-~~l~~l~~L~  779 (938)
                                                                   .....++.|+.||+++|++++.+| ..+..+++|+
T Consensus       222 ---------------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          222 ---------------------------------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             ---------------------------------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             ---------------------------------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence                                                         001123345889999999998776 4567789999


Q ss_pred             EEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCccccc
Q 036642          780 SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK  839 (938)
Q Consensus       780 ~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  839 (938)
                      .|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++.
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            9999999999 8888877  8999999999999976 76 88999999999999999863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.4e-25  Score=238.07  Aligned_cols=213  Identities=23%  Similarity=0.181  Sum_probs=118.6

Q ss_pred             ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCc-ccccCccc
Q 036642          107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF-LYVENLWW  185 (938)
Q Consensus       107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~-i~~~~~~~  185 (938)
                      ..+|..+  .++|++|++++|.++++ .+..+.++++|++|++++|.+++..|..|+++++|++|++++|. +....+..
T Consensus        24 ~~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~  100 (285)
T 1ozn_A           24 QAVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (285)
T ss_dssp             SSCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             ccCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence            3455443  34777777777777753 34556777777777777777776667777777777777777775 66555556


Q ss_pred             cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCC
Q 036642          186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLI  265 (938)
Q Consensus       186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  265 (938)
                      |..+++|++|++++|.++....  ..+..+++|++|++++|+++++++..+.++++|++|++++|.+++.. +..+..++
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~  177 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLH  177 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCT
T ss_pred             hcCCcCCCEEECCCCcCCEECH--hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCcc
Confidence            6666666666666665554422  33445555555555555555555545555555555555555554321 23344444


Q ss_pred             CCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcC
Q 036642          266 QLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL  325 (938)
Q Consensus       266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  325 (938)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            444444444444444444444444444444444444443333444444444444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.9e-27  Score=283.07  Aligned_cols=110  Identities=13%  Similarity=0.138  Sum_probs=67.5

Q ss_pred             ccCCCcceeeccCccCCCccchhhhc-CCCCCEEEcCCCcccccCCccc-CCCCCCcEEEccccccccccc--ccccCcC
Q 036642          555 HELKKLQFLYLRGNFLQGELTDCWMN-YQNLMILDLSNNKFTGNLPISL-GSLISLQSLHLRKNNLSGTIH--SLKNCTA  630 (938)
Q Consensus       555 ~~l~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~--~l~~l~~  630 (938)
                      ..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++...  ....+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            4466777777765 555444444444 6777777777777765444333 456777777777777754332  3445777


Q ss_pred             CcEEECCCCccCCCCChhHhhhcCcccEEeeCCCc
Q 036642          631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNK  665 (938)
Q Consensus       631 L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~  665 (938)
                      |+.|++++|+++......+...+++|+...+..+.
T Consensus       508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             SSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            77777777776443333444456777666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.6e-25  Score=255.46  Aligned_cols=220  Identities=20%  Similarity=0.164  Sum_probs=189.9

Q ss_pred             ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEE
Q 036642          555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTL  634 (938)
Q Consensus       555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L  634 (938)
                      ..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..|  ++.+++|++|+|++|.+++.++    .++|++|
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            345689999999999999888999999999999999999997766  8899999999999999987543    3899999


Q ss_pred             ECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhh-cchhhhhccccccc
Q 036642          635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH-NLRAMVTLNSHAGK  713 (938)
Q Consensus       635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~l~~~~~~  713 (938)
                      ++++|.+.+..+.    .+++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+. .+++|         
T Consensus       105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L---------  171 (487)
T 3oja_A          105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL---------  171 (487)
T ss_dssp             ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred             ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc---------
Confidence            9999999875543    478999999999999999999999999999999999999988887765 45544         


Q ss_pred             hhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCC
Q 036642          714 AIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP  793 (938)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  793 (938)
                                                               +.|+|++|.+++. |. ...+++|+.|+|++|.+++. |
T Consensus       172 -----------------------------------------~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~  207 (487)
T 3oja_A          172 -----------------------------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-G  207 (487)
T ss_dssp             -----------------------------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-C
T ss_pred             -----------------------------------------cEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-C
Confidence                                                     7889999999865 33 44689999999999999964 4


Q ss_pred             ccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642          794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG  838 (938)
Q Consensus       794 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  838 (938)
                      ..++.+++|+.|||++|++++ +|..+..+++|+.|++++|++.|
T Consensus       208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred             HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence            458999999999999999996 78889999999999999999983

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4.8e-25  Score=258.05  Aligned_cols=288  Identities=23%  Similarity=0.196  Sum_probs=186.2

Q ss_pred             CCCCCCCCCCCccccceeeC------CCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCC
Q 036642           55 RLASWIGYEDCCAWAGVVCD------NVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYND  128 (938)
Q Consensus        55 ~l~~W~~~~~~c~w~gv~c~------~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~  128 (938)
                      ..++|....+||.|+|..|.      .....++.+++++.               .+. .+|..+.  ++|++|+|++|.
T Consensus        11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n---------------~L~-~lp~~l~--~~L~~L~L~~N~   72 (622)
T 3g06_A           11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES---------------GLT-TLPDCLP--AHITTLVIPDNN   72 (622)
T ss_dssp             HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS---------------CCS-CCCSCCC--TTCSEEEECSCC
T ss_pred             HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCC---------------CcC-ccChhhC--CCCcEEEecCCC
Confidence            34567554789999774321      11234778888773               333 7777665  788999999998


Q ss_pred             CCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcch
Q 036642          129 FQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDW  208 (938)
Q Consensus       129 l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  208 (938)
                      ++.  +|.   .+++|++|+|++|++++ +|.   .+++|++|++++|.+.....    .+++|+.|++++|+++.++. 
T Consensus        73 l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~-  138 (622)
T 3g06_A           73 LTS--LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV-  138 (622)
T ss_dssp             CSC--CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC-
T ss_pred             CCC--CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC-
Confidence            883  565   57888999999998884 554   67888888888888876544    56778888888888877654 


Q ss_pred             hhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCC
Q 036642          209 LRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNL  288 (938)
Q Consensus       209 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  288 (938)
                           .+++|++|++++|++++++.    .+++|+.|++++|.+++  +|   ..+++|++|++++|.+++ +|..   +
T Consensus       139 -----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~~-l~~~---~  200 (622)
T 3g06_A          139 -----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLAS-LPTL---P  200 (622)
T ss_dssp             -----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred             -----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCCC-CCCc---c
Confidence                 24778888888888877653    34677888888887775  24   446778888888887774 4432   3


Q ss_pred             CCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCc
Q 036642          289 TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGL  368 (938)
Q Consensus       289 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L  368 (938)
                      ++|+.|++++|.++. +|.   .+++|++|++++|.+++. |   ..+++|+.|++++|.++.. |.        ..++|
T Consensus       201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~l-p~--------~~~~L  263 (622)
T 3g06_A          201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTSL-PM--------LPSGL  263 (622)
T ss_dssp             TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC--------CCTTC
T ss_pred             chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCcC-Cc--------ccccC
Confidence            677777777777763 343   246677777777777652 2   3445566666666655532 11        11245


Q ss_pred             cEEEccCCcCccccccccCCCCCccEEEccCCeecccccccc
Q 036642          369 EILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSL  410 (938)
Q Consensus       369 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  410 (938)
                      +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+
T Consensus       264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            55555555554 334444555555555555555554444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.7e-26  Score=248.53  Aligned_cols=247  Identities=19%  Similarity=0.273  Sum_probs=205.6

Q ss_pred             ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCccc-ccCCcccC-------CCCCCcEEEccccccccccc-cc
Q 036642          555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFT-GNLPISLG-------SLISLQSLHLRKNNLSGTIH-SL  625 (938)
Q Consensus       555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~-~l  625 (938)
                      +..++|++|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|+|++|++++.+| .+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3467899999999999  678777655  999999999994 56776665       79999999999999998887 55


Q ss_pred             --ccCcCCcEEECCCCccCCCCChhHhhhc-----CcccEEeeCCCcccccCCccccCCCccCeeecccccccccc--ch
Q 036642          626 --KNCTALLTLDVGENEFVENIPTWIGERF-----SRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV--PR  696 (938)
Q Consensus       626 --~~l~~L~~L~Ls~N~l~~~~p~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~  696 (938)
                        ..+++|++|++++|++.+. |..+. .+     ++|++|++++|++++..|..+..+++|+.|++++|++.+.+  |.
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence              8999999999999999987 87776 56     89999999999999999899999999999999999988753  32


Q ss_pred             hh--hcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCc--cCch-h
Q 036642          697 CI--HNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSG--KIPL-E  771 (938)
Q Consensus       697 ~l--~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g--~ip~-~  771 (938)
                      .+  ..++                                                  .|+.|++++|++++  .+|. .
T Consensus       194 ~~~~~~l~--------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          194 ALCPLKFP--------------------------------------------------TLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HSCTTSCT--------------------------------------------------TCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHHhccCC--------------------------------------------------CCCEEECCCCcCcchHHHHHHH
Confidence            32  3333                                                  34899999999983  3343 3


Q ss_pred             ccCccCCCEEeCcCccCcccCC-ccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcC
Q 036642          772 VTNLKALQSFNLSNNFFTGRIP-ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFD  850 (938)
Q Consensus       772 l~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~  850 (938)
                      +.++++|+.|+|++|++++.+| ..+..+++|++|||++|+++ .+|..+.  ++|++|++++|++++. |....+..+.
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~  299 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVG  299 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEE
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCC
Confidence            4688999999999999998886 56777899999999999999 7898887  8999999999999976 7666666666


Q ss_pred             CCCcCCCCCCC
Q 036642          851 ASSYAGNDLCG  861 (938)
Q Consensus       851 ~~~~~~n~lc~  861 (938)
                      ...+.+|.+.+
T Consensus       300 ~L~L~~N~l~~  310 (312)
T 1wwl_A          300 NLSLKGNPFLD  310 (312)
T ss_dssp             EEECTTCTTTC
T ss_pred             EEeccCCCCCC
Confidence            66677775543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=3.2e-25  Score=240.71  Aligned_cols=219  Identities=20%  Similarity=0.176  Sum_probs=147.7

Q ss_pred             ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEE
Q 036642          555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTL  634 (938)
Q Consensus       555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L  634 (938)
                      ..+++|++|++++|++++..|..+..+++|++|++++|.+++..|  +..+++|++|++++|++++..    ..++|++|
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L  104 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL  104 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence            446678888888888887777777888888888888888876544  777888888888888777533    33678888


Q ss_pred             ECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhh-cchhhhhccccccc
Q 036642          635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH-NLRAMVTLNSHAGK  713 (938)
Q Consensus       635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~l~~~~~~  713 (938)
                      ++++|++.+..+.    .+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..+. .+++|         
T Consensus       105 ~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L---------  171 (317)
T 3o53_A          105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL---------  171 (317)
T ss_dssp             ECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred             ECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC---------
Confidence            8888877664332    367788888888888877777777788888888888888766665542 34444         


Q ss_pred             hhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCC
Q 036642          714 AIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP  793 (938)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  793 (938)
                                                               +.|++++|++++. |. ...+++|+.|+|++|++++ +|
T Consensus       172 -----------------------------------------~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~  207 (317)
T 3o53_A          172 -----------------------------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MG  207 (317)
T ss_dssp             -----------------------------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-EC
T ss_pred             -----------------------------------------CEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-ch
Confidence                                                     5566666666532 32 2235666666666666663 33


Q ss_pred             ccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCccc
Q 036642          794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLT  837 (938)
Q Consensus       794 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  837 (938)
                      ..+..+++|+.|||++|+++ .+|..+..+++|++|++++|+++
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            34666666666666666666 35555666666666666666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=8.6e-24  Score=247.41  Aligned_cols=270  Identities=24%  Similarity=0.253  Sum_probs=183.2

Q ss_pred             CccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeeccc
Q 036642          367 GLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRH  446 (938)
Q Consensus       367 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~  446 (938)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++. +|.   .+++|++|+|++|++++++.               
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---------------   98 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV---------------   98 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC---------------
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC---------------
Confidence            5778888888777 4454443  677788888887773 443   46777777777777776543               


Q ss_pred             ccCCCCCCcccCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCC
Q 036642          447 CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALP  526 (938)
Q Consensus       447 ~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p  526 (938)
                                  .+++|++|++++|.+++ +|.    .+++|+.|++++|++++..+.   +++|++|++++|.+++ +|
T Consensus        99 ------------~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~  157 (622)
T 3g06_A           99 ------------LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LP  157 (622)
T ss_dssp             ------------CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC
T ss_pred             ------------CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cC
Confidence                        33455555555555542 222    244555666666555543222   2556666666666654 34


Q ss_pred             CCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCC
Q 036642          527 LISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI  606 (938)
Q Consensus       527 ~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  606 (938)
                      ..+++|+.|++++|.+++ +|       ..+++|+.|++++|++++ +|..   .++|+.|++++|.++ .+|..   ++
T Consensus       158 ~~~~~L~~L~L~~N~l~~-l~-------~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~  221 (622)
T 3g06_A          158 ALPSELCKLWAYNNQLTS-LP-------MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PS  221 (622)
T ss_dssp             CCCTTCCEEECCSSCCSC-CC-------CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CT
T ss_pred             CccCCCCEEECCCCCCCC-Cc-------ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CC
Confidence            445667777777777765 22       235778888888888775 3432   467888888888887 44532   47


Q ss_pred             CCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecc
Q 036642          607 SLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLA  686 (938)
Q Consensus       607 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  686 (938)
                      +|+.|++++|++++. |  ..+++|+.|++++|++++ +|.    .+++|+.|++++|+++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~l-p--~~l~~L~~L~Ls~N~L~~-lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTSL-P--VLPSELKELMVSGNRLTS-LPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSCC-C--CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCcC-C--CCCCcCcEEECCCCCCCc-CCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            788888888888763 3  455788888888888874 665    4678889999999888 568888889999999999


Q ss_pred             ccccccccchhhhcchhh
Q 036642          687 DNNLSGEVPRCIHNLRAM  704 (938)
Q Consensus       687 ~N~l~~~~p~~l~~l~~L  704 (938)
                      +|++++.+|..+..++..
T Consensus       293 ~N~l~~~~~~~l~~L~~~  310 (622)
T 3g06_A          293 GNPLSERTLQALREITSA  310 (622)
T ss_dssp             SCCCCHHHHHHHHHHHHS
T ss_pred             CCCCCCcCHHHHHhcccc
Confidence            999998888887776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=6.4e-26  Score=246.22  Aligned_cols=149  Identities=20%  Similarity=0.137  Sum_probs=74.9

Q ss_pred             CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccC-CCCCCcEEEcccccccccccccccCcCCcEEEC
Q 036642          558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLG-SLISLQSLHLRKNNLSGTIHSLKNCTALLTLDV  636 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L  636 (938)
                      ++|++|++++|++++..+..+..+++|++|++++|.+++..|..+. .+++|++|+|++|.+++. +....+++|++|++
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~L  198 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDL  198 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEEC
Confidence            3344444444444444444444445555555555555444443332 345555555555555443 22223455555555


Q ss_pred             CCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccc-cccchhhhcchhhhhcccc
Q 036642          637 GENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLS-GEVPRCIHNLRAMVTLNSH  710 (938)
Q Consensus       637 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~~~  710 (938)
                      ++|++.+ +|..+. .+++|++|++++|++++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.+++.
T Consensus       199 s~N~l~~-l~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          199 SSNKLAF-MGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CSSCCCE-ECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCcCCc-chhhhc-ccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            5555543 333333 45555555555555553 4455555666666666666665 5555556666555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=6.3e-24  Score=224.84  Aligned_cols=217  Identities=24%  Similarity=0.274  Sum_probs=131.2

Q ss_pred             CCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCC
Q 036642           63 EDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMG  142 (938)
Q Consensus        63 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~  142 (938)
                      .++|.|.|+.|.. .+.++.+++++.               .+. .+|..+.  +.+++|+|++|.++.+ .+..+.+++
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~---------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~   61 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSK---------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLT   61 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTS---------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCT
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCC---------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCC
Confidence            5789999999964 234456666652               222 4555443  4677777777777643 334566677


Q ss_pred             CCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEE
Q 036642          143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR  222 (938)
Q Consensus       143 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  222 (938)
                      +|++|++++|.++...+..|.++++|++|++++|++....+..|..+++|++|++++                       
T Consensus        62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------------------  118 (270)
T 2o6q_A           62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR-----------------------  118 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS-----------------------
T ss_pred             CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC-----------------------
Confidence            777777777777655555556667777777766666655554455555555555554                       


Q ss_pred             cCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCC
Q 036642          223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN  302 (938)
Q Consensus       223 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  302 (938)
                         |+++++++..|.++++|++|++++|.+++.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       119 ---n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          119 ---NQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             ---SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ---CccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence               4455555555555555555555555555422 334555566666666666665555555666666666666666666


Q ss_pred             CccchhhhcCCCCCEEEccCCcCC
Q 036642          303 SSIPNWLYRFNRLESLGVSNNSLQ  326 (938)
Q Consensus       303 ~~~p~~l~~l~~L~~L~L~~n~l~  326 (938)
                      +..+..+..+++|++|++++|.+.
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          195 RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCHHHhccccCCCEEEecCCCee
Confidence            555555666677777777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.5e-24  Score=228.93  Aligned_cols=211  Identities=21%  Similarity=0.193  Sum_probs=147.1

Q ss_pred             CCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEe
Q 036642          582 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLI  660 (938)
Q Consensus       582 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  660 (938)
                      ++|++|++++|++++..+..+.++++|++|++++|++++..+ .+.++++|++|++++|++.+..+..+. .+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence            356666666666665555556666666666666666665555 566666666666666666554444443 566666666


Q ss_pred             eCCCcccccCCccccCCCccCeeecccccccc-ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeee
Q 036642          661 LRSNKFHSLLPKGLCDLAFLQIVDLADNNLSG-EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV  739 (938)
Q Consensus       661 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (938)
                      +++|++++..+..+..+++|+.|++++|.+++ .+|..+..+++|                                   
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-----------------------------------  151 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-----------------------------------  151 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence            66666666655567777777777777777765 346666655544                                   


Q ss_pred             ecCcchhhhhhccceeEEEeecCccCccCchhccCccCCC----EEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642          740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ----SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE  815 (938)
Q Consensus       740 ~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  815 (938)
                                     +.|++++|++++..+..+..+++|+    .|++++|.+++..+..+.. .+|++|++++|++++.
T Consensus       152 ---------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~  215 (276)
T 2z62_A          152 ---------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSV  215 (276)
T ss_dssp             ---------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCC
T ss_pred             ---------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeec
Confidence                           5677777777766666676666666    7899999998666655544 4899999999999977


Q ss_pred             CCccccCCCCCCeEeCcCCcccccCCCCC
Q 036642          816 IPQSMSSLTYLNHLNLSNNNLTGKIPSST  844 (938)
Q Consensus       816 ip~~l~~l~~L~~L~ls~N~l~g~ip~~~  844 (938)
                      .+..+..+++|++|++++|+++|.+|...
T Consensus       216 ~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          216 PDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             CTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             CHhHhcccccccEEEccCCcccccCCchH
Confidence            77778899999999999999999988653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.4e-25  Score=255.82  Aligned_cols=235  Identities=23%  Similarity=0.201  Sum_probs=193.4

Q ss_pred             CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCc
Q 036642          530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ  609 (938)
Q Consensus       530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  609 (938)
                      ++|++|++++|.+++..|    ..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~  102 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE  102 (487)
T ss_dssp             GGCCEEECCSSCCCCCCG----GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred             CCccEEEeeCCcCCCCCH----HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence            456666666666665443    345678899999999999987666  8889999999999999885432     38999


Q ss_pred             EEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCcccc-CCCccCeeecccc
Q 036642          610 SLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLC-DLAFLQIVDLADN  688 (938)
Q Consensus       610 ~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N  688 (938)
                      .|++++|.+++.++.  .+++|+.|++++|.+.+..|..+. .+++|+.|++++|++++..|..+. .+++|+.|+|++|
T Consensus       103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             EEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            999999999887662  357899999999999987777776 789999999999999998888886 7999999999999


Q ss_pred             ccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccC
Q 036642          689 NLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKI  768 (938)
Q Consensus       689 ~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  768 (938)
                      .+++..+.  ..++                                                  .|+.|+|++|++++ +
T Consensus       180 ~l~~~~~~--~~l~--------------------------------------------------~L~~L~Ls~N~l~~-~  206 (487)
T 3oja_A          180 FIYDVKGQ--VVFA--------------------------------------------------KLKTLDLSSNKLAF-M  206 (487)
T ss_dssp             CCCEEECC--CCCT--------------------------------------------------TCCEEECCSSCCCE-E
T ss_pred             cccccccc--ccCC--------------------------------------------------CCCEEECCCCCCCC-C
Confidence            99865221  1222                                                  34789999999996 5


Q ss_pred             chhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccc-ccCCccccCCCCCCeEeCc
Q 036642          769 PLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLS-GEIPQSMSSLTYLNHLNLS  832 (938)
Q Consensus       769 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls  832 (938)
                      |+.++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       207 ~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          207 GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            5569999999999999999995 7888999999999999999999 6788889999888888886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=2.3e-26  Score=273.62  Aligned_cols=18  Identities=17%  Similarity=0.300  Sum_probs=12.0

Q ss_pred             ccccCCCCCCEEECCCCC
Q 036642          234 LAIANFSTLTTLDLLYNQ  251 (938)
Q Consensus       234 ~~l~~l~~L~~L~L~~n~  251 (938)
                      ..+..+++|++|+++++.
T Consensus        60 ~~~~~~~~L~~L~L~~~~   77 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKP   77 (594)
T ss_dssp             HHHHHCTTCCEEEEECSC
T ss_pred             HHHhhCCCceEEeccCCC
Confidence            345666777777777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=8.5e-23  Score=216.12  Aligned_cols=206  Identities=20%  Similarity=0.220  Sum_probs=140.9

Q ss_pred             cceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCC
Q 036642          560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN  639 (938)
Q Consensus       560 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N  639 (938)
                      .+.+++++++++. +|..+.  +++++|++++|++++..+..|..+++|++|+|++|.+++                   
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------   75 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-------------------   75 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-------------------
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-------------------
Confidence            4556666655552 333322  345555555555554444445555555555555555443                   


Q ss_pred             ccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhh
Q 036642          640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQF  719 (938)
Q Consensus       640 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~  719 (938)
                           +|...+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..|..+++|               
T Consensus        76 -----i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------  135 (270)
T 2o6q_A           76 -----LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL---------------  135 (270)
T ss_dssp             -----CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred             -----eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC---------------
Confidence                 333332245555555666666555555556667777777777777776555555555544               


Q ss_pred             hhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccccc
Q 036642          720 LLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM  799 (938)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  799 (938)
                                                         +.|+|++|++++..+..++.+++|+.|+|++|.+++..|..|..+
T Consensus       136 -----------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          136 -----------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             -----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -----------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence                                               677888888886555568889999999999999998777789999


Q ss_pred             CCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCC
Q 036642          800 RSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       800 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      ++|+.|||++|++++..+..+..+++|++|++++|++.|.++.
T Consensus       181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            9999999999999987777789999999999999999988764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=7e-24  Score=224.63  Aligned_cols=223  Identities=19%  Similarity=0.173  Sum_probs=178.5

Q ss_pred             CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642          558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG  637 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls  637 (938)
                      ..+..+++.++.+.+..  ....+++|+.|++++|.++. ++ .+..+++|++|++++|.+++ ++.+..+++|++|+++
T Consensus        19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECT
T ss_pred             HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECC
Confidence            44556667776666443  35567888888888888773 33 47778888888888888876 3577888888888888


Q ss_pred             CCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhh
Q 036642          638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQY  717 (938)
Q Consensus       638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~  717 (938)
                      +|.+.+..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..+..+++|             
T Consensus        94 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------  159 (272)
T 3rfs_A           94 GNQLQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-------------  159 (272)
T ss_dssp             TSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCccCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence            8888765554444 78889999999998888777778889999999999999887666666666555             


Q ss_pred             hhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccc
Q 036642          718 QFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIG  797 (938)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  797 (938)
                                                           +.|++++|++++..|..++.+++|+.|++++|.+++..|..++
T Consensus       160 -------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  202 (272)
T 3rfs_A          160 -------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD  202 (272)
T ss_dssp             -------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             -------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence                                                 7889999999977777788999999999999999988888899


Q ss_pred             ccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC
Q 036642          798 AMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS  843 (938)
Q Consensus       798 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  843 (938)
                      .+++|+.|++++|++.+..|       .|+++++++|.++|.+|..
T Consensus       203 ~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          203 RLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred             CCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence            99999999999999987644       5788899999999999864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.6e-22  Score=214.95  Aligned_cols=216  Identities=25%  Similarity=0.238  Sum_probs=120.6

Q ss_pred             ccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642          107 GKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL  186 (938)
Q Consensus       107 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  186 (938)
                      .++|..+.  ++|++|++++|.+++. .+..+.++++|++|++++|.+++..+..|+++++|++|++++|.+....+..|
T Consensus        20 ~~ip~~l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (276)
T 2z62_A           20 YKIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF   96 (276)
T ss_dssp             SSCCSSSC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             cccCCCCC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence            34555543  3677777777777753 33466777777777777777776666677777777777777777766666666


Q ss_pred             CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642          187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ  266 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  266 (938)
                      .++++|++|++++|.++..                          ++..+.++++|++|++++|.+.+..+|..+..+++
T Consensus        97 ~~l~~L~~L~l~~n~l~~~--------------------------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~  150 (276)
T 2z62_A           97 SGLSSLQKLVAVETNLASL--------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (276)
T ss_dssp             TTCTTCCEEECTTSCCCCS--------------------------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             cCCccccEEECCCCCcccc--------------------------CchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence            6666666666666655544                          33334444444444444444443222444444555


Q ss_pred             CCEEEccCCcccCCCCccccCCCCCC----EEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCee
Q 036642          267 LVFLDLRRNNFQGPIPEGLQNLTSLK----HLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV  342 (938)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  342 (938)
                      |++|++++|.+++..+..+..+++|+    +|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|
T Consensus       151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred             CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEE
Confidence            55555555555444444444333333    55555555543322222 22355555555555554444445555555555


Q ss_pred             ecCCCcCccc
Q 036642          343 MLSCVKLSQE  352 (938)
Q Consensus       343 ~L~~n~l~~~  352 (938)
                      ++++|.+.+.
T Consensus       230 ~l~~N~~~c~  239 (276)
T 2z62_A          230 WLHTNPWDCS  239 (276)
T ss_dssp             ECCSSCBCCC
T ss_pred             EccCCccccc
Confidence            5555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.6e-24  Score=242.58  Aligned_cols=240  Identities=15%  Similarity=0.255  Sum_probs=154.7

Q ss_pred             hhhccCCCcceeeccCccCCCccc----hhhhcCCCCCEEEcCCC---cccccCCccc-------CCCCCCcEEEccccc
Q 036642          552 YRAHELKKLQFLYLRGNFLQGELT----DCWMNYQNLMILDLSNN---KFTGNLPISL-------GSLISLQSLHLRKNN  617 (938)
Q Consensus       552 ~~l~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~  617 (938)
                      ..+..+++|++|++++|.+++..+    ..+..+++|++|++++|   ++++.+|..+       ..+++|++|+|++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            344455666666666666654422    22445666666666664   3334444433       456666666666666


Q ss_pred             ccc----ccc-ccccCcCCcEEECCCCccCCCCChhHhh---hc---------CcccEEeeCCCccc-ccCC---ccccC
Q 036642          618 LSG----TIH-SLKNCTALLTLDVGENEFVENIPTWIGE---RF---------SRMVVLILRSNKFH-SLLP---KGLCD  676 (938)
Q Consensus       618 l~~----~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~l~~  676 (938)
                      +++    .++ .+..+++|++|+|++|.+.+..+..+..   .+         ++|++|++++|+++ +.++   ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            665    244 5666666666666666664333333321   22         67777777777776 3333   35556


Q ss_pred             CCccCeeecccccccc-----ccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhc
Q 036642          677 LAFLQIVDLADNNLSG-----EVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCIL  751 (938)
Q Consensus       677 l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (938)
                      +++|+.|++++|+++.     .+|..+..+                                                  
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~--------------------------------------------------  215 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--------------------------------------------------  215 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGC--------------------------------------------------
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcC--------------------------------------------------
Confidence            7777777777777762     122233332                                                  


Q ss_pred             cceeEEEeecCccC----ccCchhccCccCCCEEeCcCccCccc----CCcccc--ccCCCCEEECCCCcccc----cCC
Q 036642          752 NLVRIIDFSKNNFS----GKIPLEVTNLKALQSFNLSNNFFTGR----IPESIG--AMRSLESIDFSLNQLSG----EIP  817 (938)
Q Consensus       752 ~~l~~L~Ls~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~--~l~~L~~LdLs~N~l~~----~ip  817 (938)
                      +.|+.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+.  .+++|+.|+|++|++++    .+|
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            23477888888885    56788888888888899999888866    566663  38889999999999887    478


Q ss_pred             ccc-cCCCCCCeEeCcCCcccccCC
Q 036642          818 QSM-SSLTYLNHLNLSNNNLTGKIP  841 (938)
Q Consensus       818 ~~l-~~l~~L~~L~ls~N~l~g~ip  841 (938)
                      ..+ .++++|++|++++|++++..|
T Consensus       296 ~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHhcCCCceEEEccCCcCCcchh
Confidence            777 668889999999998887664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.8e-22  Score=213.91  Aligned_cols=205  Identities=19%  Similarity=0.161  Sum_probs=130.0

Q ss_pred             ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEE
Q 036642          555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTL  634 (938)
Q Consensus       555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L  634 (938)
                      +.+++++++++++|.++ .+|..+.  ++++.|++++|.+++..|..+..+++|+.|+|++|.+++..+. ..+      
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l------   76 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL------   76 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC------
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC------
Confidence            44566666666666666 3343332  4566666666666655555666666666666666665543222 344      


Q ss_pred             ECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccch
Q 036642          635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKA  714 (938)
Q Consensus       635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~  714 (938)
                                         ++|++|++++|+++ .+|..+..+++|+.|++++|++++..|..|..+++|          
T Consensus        77 -------------------~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L----------  126 (290)
T 1p9a_G           77 -------------------PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL----------  126 (290)
T ss_dssp             -------------------TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC----------
T ss_pred             -------------------CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC----------
Confidence                               44555555555544 244455556666666666666665555555555444          


Q ss_pred             hhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCc
Q 036642          715 IQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE  794 (938)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  794 (938)
                                                              +.|+|++|++++..|..+..+++|+.|+|++|++++..+.
T Consensus       127 ----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  166 (290)
T 1p9a_G          127 ----------------------------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (290)
T ss_dssp             ----------------------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             ----------------------------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence                                                    5666777777755555567777788888888888755555


Q ss_pred             cccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccC
Q 036642          795 SIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKI  840 (938)
Q Consensus       795 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  840 (938)
                      .|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.|.+
T Consensus       167 ~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             HhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            6677788888888888887 57777777778888888888887755

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=1.2e-22  Score=215.11  Aligned_cols=208  Identities=20%  Similarity=0.206  Sum_probs=167.0

Q ss_pred             ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcE
Q 036642          555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLT  633 (938)
Q Consensus       555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~  633 (938)
                      ..+++|+.|++++|.++. + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+ .+.++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            346777888888887763 2 3477788888888888888753  367788888888888888887766 6788888888


Q ss_pred             EECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccc
Q 036642          634 LDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGK  713 (938)
Q Consensus       634 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~  713 (938)
                      |++++|++.+..+..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..+++|         
T Consensus       114 L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------  183 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL---------  183 (272)
T ss_dssp             EECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------
T ss_pred             EECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC---------
Confidence            88888888765554444 68888899999998888777778889999999999999987666666666655         


Q ss_pred             hhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCC
Q 036642          714 AIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP  793 (938)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip  793 (938)
                                                               +.|++++|++++..|..++.+++|+.|++++|.+.+.. 
T Consensus       184 -----------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-  221 (272)
T 3rfs_A          184 -----------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-  221 (272)
T ss_dssp             -----------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-
T ss_pred             -----------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-
Confidence                                                     78899999999877777899999999999999988654 


Q ss_pred             ccccccCCCCEEECCCCcccccCCccccCCC
Q 036642          794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLT  824 (938)
Q Consensus       794 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  824 (938)
                            ++|+.|+++.|+++|.+|.+++.+.
T Consensus       222 ------~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          222 ------PGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             ------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             ------cHHHHHHHHHHhCCCcccCcccccC
Confidence                  4689999999999999999987664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=7.7e-22  Score=210.49  Aligned_cols=202  Identities=22%  Similarity=0.193  Sum_probs=148.0

Q ss_pred             CCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCC
Q 036642          529 SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL  608 (938)
Q Consensus       529 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  608 (938)
                      ++++++++++++.++. +|..+      .+.+++|++++|++++..+..+..+++|++|++++|.+++..+.  +.+++|
T Consensus         9 l~~l~~l~~~~~~l~~-ip~~~------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA-LPPDL------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             STTCCEEECTTSCCSS-CCSCC------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             cCCccEEECCCCCCCc-CCCCC------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            5689999999999985 33221      36899999999999988889999999999999999999965443  789999


Q ss_pred             cEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccc
Q 036642          609 QSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN  688 (938)
Q Consensus       609 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  688 (938)
                      ++|++++|+++..+..+..+++|++|++++|+++                         +..+..|..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-------------------------~l~~~~~~~l~~L~~L~L~~N  134 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-------------------------SLPLGALRGLGELQELYLKGN  134 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCC-------------------------CCCSSTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCCCcCc-------------------------ccCHHHHcCCCCCCEEECCCC
Confidence            9999999998743335555555555555555554                         444445555666666666666


Q ss_pred             ccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccC
Q 036642          689 NLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKI  768 (938)
Q Consensus       689 ~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  768 (938)
                      ++++..+..|..+++|                                                  +.|+|++|++++..
T Consensus       135 ~l~~~~~~~~~~l~~L--------------------------------------------------~~L~L~~N~l~~l~  164 (290)
T 1p9a_G          135 ELKTLPPGLLTPTPKL--------------------------------------------------EKLSLANNNLTELP  164 (290)
T ss_dssp             CCCCCCTTTTTTCTTC--------------------------------------------------CEEECTTSCCSCCC
T ss_pred             CCCccChhhcccccCC--------------------------------------------------CEEECCCCcCCccC
Confidence            6664444444444433                                                  56677777777444


Q ss_pred             chhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642          769 PLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE  815 (938)
Q Consensus       769 p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  815 (938)
                      +..+..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|++.+.
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             HHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            444577888888888888888 6788888888888888888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.4e-23  Score=229.22  Aligned_cols=130  Identities=19%  Similarity=0.165  Sum_probs=64.5

Q ss_pred             eecCCccCccCCCCC---CCCCcEEEccCCccccccchhhhhhhccCC-CcceeeccCccCCCccchhhhcC-----CCC
Q 036642          514 LSLGSNSFSGALPLI---SSNLIELDFSNNSISGSIFHFICYRAHELK-KLQFLYLRGNFLQGELTDCWMNY-----QNL  584 (938)
Q Consensus       514 L~L~~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~~~~l-----~~L  584 (938)
                      ++++.|.+++.+|..   .++|++|++++|.+++..+..+...+..++ +|++|++++|++++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            455556665554432   234555566555555544444444445555 55555555555555444444443     555


Q ss_pred             CEEEcCCCcccccCCcccC----CC-CCCcEEEccccccccccc-c----ccc-CcCCcEEECCCCccCC
Q 036642          585 MILDLSNNKFTGNLPISLG----SL-ISLQSLHLRKNNLSGTIH-S----LKN-CTALLTLDVGENEFVE  643 (938)
Q Consensus       585 ~~L~Ls~n~l~~~~p~~~~----~l-~~L~~L~L~~n~l~~~~~-~----l~~-l~~L~~L~Ls~N~l~~  643 (938)
                      ++|++++|.+++..+..+.    .+ ++|++|+|++|++++..+ .    +.. .++|++|++++|.+.+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            5555555555544443222    22 455555555555544332 2    122 2355555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=4e-23  Score=228.68  Aligned_cols=160  Identities=21%  Similarity=0.178  Sum_probs=76.1

Q ss_pred             EEccCCccccccchhhhhhhccCCCcceeeccCccCCCccc----hhhhcCC-CCCEEEcCCCcccccCCcccCCC----
Q 036642          535 LDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELT----DCWMNYQ-NLMILDLSNNKFTGNLPISLGSL----  605 (938)
Q Consensus       535 L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l----  605 (938)
                      ++++.|.+++.+|..    +...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+    
T Consensus         3 ~~ls~n~~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGSNPVEEF----TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EECCCCTTCCHHHHH----HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             cccccccchHHHHHH----HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            345555555544322    1223335555555555554444    4444555 55555555555555444444443    


Q ss_pred             -CCCcEEEccccccccccc-c----cccC-cCCcEEECCCCccCCCCChhHhhh----cCcccEEeeCCCcccccCC---
Q 036642          606 -ISLQSLHLRKNNLSGTIH-S----LKNC-TALLTLDVGENEFVENIPTWIGER----FSRMVVLILRSNKFHSLLP---  671 (938)
Q Consensus       606 -~~L~~L~L~~n~l~~~~~-~----l~~l-~~L~~L~Ls~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~~~~~---  671 (938)
                       ++|++|+|++|.+++..+ .    +..+ ++|++|++++|++.+..+..+...    .++|++|++++|++++..+   
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             555555555555554333 2    2222 455555555555554444333211    2355555555555553222   


Q ss_pred             -ccccCCC-ccCeeeccccccccccchhh
Q 036642          672 -KGLCDLA-FLQIVDLADNNLSGEVPRCI  698 (938)
Q Consensus       672 -~~l~~l~-~L~~L~Ls~N~l~~~~p~~l  698 (938)
                       ..+..++ +|+.|++++|++++..+..+
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  187 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAEL  187 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHH
Confidence             2223333 55555555555554444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=4.2e-23  Score=230.98  Aligned_cols=237  Identities=19%  Similarity=0.237  Sum_probs=184.7

Q ss_pred             CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCc---cCCCccchhh-------hcCCCCCEEEcCCCcccc---
Q 036642          530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN---FLQGELTDCW-------MNYQNLMILDLSNNKFTG---  596 (938)
Q Consensus       530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n---~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~---  596 (938)
                      ++|++|++++|.+++..+..++..+..+++|++|++++|   ++++.+|..+       ..+++|++|++++|.+++   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            456667777777766655556666777888888888885   4445556554       678899999999999886   


Q ss_pred             -cCCcccCCCCCCcEEEccccccccccc-----ccccC---------cCCcEEECCCCccC-CCCCh---hHhhhcCccc
Q 036642          597 -NLPISLGSLISLQSLHLRKNNLSGTIH-----SLKNC---------TALLTLDVGENEFV-ENIPT---WIGERFSRMV  657 (938)
Q Consensus       597 -~~p~~~~~l~~L~~L~L~~n~l~~~~~-----~l~~l---------~~L~~L~Ls~N~l~-~~~p~---~~~~~l~~L~  657 (938)
                       .+|..+..+++|++|+|++|.+++..+     .+..+         ++|++|++++|++. +.+|.   .+. .+++|+
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~  190 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLH  190 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCC
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcC
Confidence             467778888999999999998875433     34444         89999999999987 34442   333 688999


Q ss_pred             EEeeCCCcccc-----cCCccccCCCccCeeeccccccc----cccchhhhcchhhhhccccccchhhhhhhhccCCCcc
Q 036642          658 VLILRSNKFHS-----LLPKGLCDLAFLQIVDLADNNLS----GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPS  728 (938)
Q Consensus       658 ~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  728 (938)
                      .|++++|+++.     ..|..+..+++|+.|+|++|.++    +.+|..+..+++|                        
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------------------------  246 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------------------------  246 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------------------------
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------------------------
Confidence            99999999883     34557888999999999999996    5566666555544                        


Q ss_pred             hhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc----Cchhc--cCccCCCEEeCcCccCcc----cCCccc-c
Q 036642          729 TAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK----IPLEV--TNLKALQSFNLSNNFFTG----RIPESI-G  797 (938)
Q Consensus       729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~----ip~~l--~~l~~L~~L~Ls~N~l~~----~ip~~~-~  797 (938)
                                                +.|+|++|++++.    +|..+  +.+++|+.|+|++|.+++    .+|..+ .
T Consensus       247 --------------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~  300 (386)
T 2ca6_A          247 --------------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE  300 (386)
T ss_dssp             --------------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred             --------------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence                                      7899999999876    67777  449999999999999998    588888 6


Q ss_pred             ccCCCCEEECCCCcccccCC
Q 036642          798 AMRSLESIDFSLNQLSGEIP  817 (938)
Q Consensus       798 ~l~~L~~LdLs~N~l~~~ip  817 (938)
                      ++++|++|++++|++++..|
T Consensus       301 ~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          301 KMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCceEEEccCCcCCcchh
Confidence            78999999999999998764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.2e-22  Score=219.73  Aligned_cols=199  Identities=21%  Similarity=0.212  Sum_probs=125.4

Q ss_pred             CCCEEEcCCCcccccCCccc--CCCCCCcEEEccccccccccc-----ccccCcCCcEEECCCCccCCCCChhHhhhcCc
Q 036642          583 NLMILDLSNNKFTGNLPISL--GSLISLQSLHLRKNNLSGTIH-----SLKNCTALLTLDVGENEFVENIPTWIGERFSR  655 (938)
Q Consensus       583 ~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~-----~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~  655 (938)
                      +|++|++++|.+++..|..+  ..+++|++|+|++|.+++..+     .+..+++|++|++++|++.+..|..+. .+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCCC
Confidence            34444444444444444444  444444444444444443211     122344555555555555443333333 4555


Q ss_pred             ccEEeeCCCccccc--C--CccccCCCccCeeeccccccccccchh----hhcchhhhhccccccchhhhhhhhccCCCc
Q 036642          656 MVVLILRSNKFHSL--L--PKGLCDLAFLQIVDLADNNLSGEVPRC----IHNLRAMVTLNSHAGKAIQYQFLLYASRAP  727 (938)
Q Consensus       656 L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  727 (938)
                      |++|++++|++.+.  +  +..+..+++|++|++++|+++ .+|..    +..+                          
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l--------------------------  223 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG--------------------------  223 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT--------------------------
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC--------------------------
Confidence            55555555554431  1  223456788888888888886 23321    1222                          


Q ss_pred             chhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCc---cCCCEEeCcCccCcccCCccccccCCCCE
Q 036642          728 STAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNL---KALQSFNLSNNFFTGRIPESIGAMRSLES  804 (938)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~  804 (938)
                                              +.|+.|||++|++++.+|+.++.+   ++|+.|+|++|+++ .+|..+.  ++|+.
T Consensus       224 ------------------------~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~  276 (310)
T 4glp_A          224 ------------------------VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV  276 (310)
T ss_dssp             ------------------------CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred             ------------------------CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence                                    234778899999998888888777   69999999999999 7788775  79999


Q ss_pred             EECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642          805 IDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG  838 (938)
Q Consensus       805 LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  838 (938)
                      |||++|++++. |. +..+++|+.|++++|+++.
T Consensus       277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            99999999964 44 6788999999999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.9e-21  Score=200.94  Aligned_cols=192  Identities=23%  Similarity=0.272  Sum_probs=124.4

Q ss_pred             CCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCcccccccCCCC
Q 036642           64 DCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGN  143 (938)
Q Consensus        64 ~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~  143 (938)
                      +||.|.|++|..   ..+.+++++                .-...+|..+.  +++++|+|++|.+++. .+..+.++++
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~----------------~~l~~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~   60 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQG----------------KSLDSVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTK   60 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTT----------------CCCSSCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred             cCCCCCceEcCC---CCeEEecCC----------------CCccccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCccc
Confidence            689999999953   223466665                22335666554  4788888888888764 5556777888


Q ss_pred             CcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEc
Q 036642          144 LRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRL  223 (938)
Q Consensus       144 L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L  223 (938)
                      |++|+|++|.+++..|..|.++++|++|++++|++....+..|..+++|++|++++|+++                    
T Consensus        61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------------  120 (251)
T 3m19_A           61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK--------------------  120 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred             CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC--------------------
Confidence            888888888888777777788888888888877777665555555555555555555544                    


Q ss_pred             CCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCC
Q 036642          224 SRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNS  303 (938)
Q Consensus       224 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  303 (938)
                            ++++..|.++++|++|++++|++++.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus       121 ------~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          121 ------SLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ------CCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ------CcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence                  444444555555555555555555422 3345556666666666666665555566667777777777777665


Q ss_pred             c
Q 036642          304 S  304 (938)
Q Consensus       304 ~  304 (938)
                      .
T Consensus       194 ~  194 (251)
T 3m19_A          194 S  194 (251)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=5e-22  Score=214.83  Aligned_cols=232  Identities=14%  Similarity=0.143  Sum_probs=172.1

Q ss_pred             CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhh--hcCCCCCEEEcCCCcccccCC----cccC
Q 036642          530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCW--MNYQNLMILDLSNNKFTGNLP----ISLG  603 (938)
Q Consensus       530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~  603 (938)
                      ..++.+.+.++.++......... ...+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..|    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            35678888888776532222211 1234668999999999988888877  888899999999999887655    3445


Q ss_pred             CCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCC--CC-hhHhhhcCcccEEeeCCCcccccC--Cc-cccC
Q 036642          604 SLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVEN--IP-TWIGERFSRMVVLILRSNKFHSLL--PK-GLCD  676 (938)
Q Consensus       604 ~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~--~p-~~~~~~l~~L~~L~L~~n~l~~~~--~~-~l~~  676 (938)
                      .+++|++|+|++|++++.++ .+..+++|++|++++|++.+.  ++ ......+++|++|++++|+++...  +. .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            78899999999999988777 888889999999999987652  11 121226788999999999886421  12 2467


Q ss_pred             CCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeE
Q 036642          677 LAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRI  756 (938)
Q Consensus       677 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  756 (938)
                      +++|+.||+++|++++.+|+.+..+..+                                               +.|+.
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~-----------------------------------------------~~L~~  255 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWS-----------------------------------------------SALNS  255 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCC-----------------------------------------------TTCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCc-----------------------------------------------CcCCE
Confidence            7889999999999988778776655322                                               12377


Q ss_pred             EEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccc
Q 036642          757 IDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG  814 (938)
Q Consensus       757 L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~  814 (938)
                      |+|++|+++ .+|..+.  ++|+.|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus       256 L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          256 LNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             EECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             EECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            889999998 7788775  7899999999999853 44 6778889999999998874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.6e-21  Score=203.97  Aligned_cols=211  Identities=18%  Similarity=0.232  Sum_probs=138.4

Q ss_pred             CCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEee
Q 036642          583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLIL  661 (938)
Q Consensus       583 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L  661 (938)
                      +.++++++++.++ .+|..+.  ++++.|+|++|.+++..+ .+.+                         +++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~-------------------------l~~L~~L~L   66 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRG-------------------------LTKLTWLNL   66 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTT-------------------------CTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcC-------------------------cccCCEEEC
Confidence            4556677766666 4554443  456666666666555444 4444                         445555555


Q ss_pred             CCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeec
Q 036642          662 RSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMK  741 (938)
Q Consensus       662 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  741 (938)
                      ++|++++..+..+..+++|+.|++++|++++..|..+..+++|                                     
T Consensus        67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------------------  109 (251)
T 3m19_A           67 DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-------------------------------------  109 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred             CCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence            5555555555556666777777777777765555555554444                                     


Q ss_pred             CcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcccc
Q 036642          742 GRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS  821 (938)
Q Consensus       742 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~  821 (938)
                                   +.|+|++|++++..|..++.+++|+.|+|++|++++..|..|+.+++|++|||++|++++..|..+.
T Consensus       110 -------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  176 (251)
T 3m19_A          110 -------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD  176 (251)
T ss_dssp             -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             -------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence                         6777888888865555678889999999999999977777899999999999999999988888899


Q ss_pred             CCCCCCeEeCcCCcccccCCCCCcCCC------cCCCCcCCCCCCCCCCCCCCCCC
Q 036642          822 SLTYLNHLNLSNNNLTGKIPSSTQLQS------FDASSYAGNDLCGAPLPRNCSEH  871 (938)
Q Consensus       822 ~l~~L~~L~ls~N~l~g~ip~~~~~~~------~~~~~~~~n~lc~~~~~~~c~~~  871 (938)
                      .+++|++|++++|+++|..+....+..      .......|+.+|+.|....|+..
T Consensus       177 ~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  232 (251)
T 3m19_A          177 RLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG  232 (251)
T ss_dssp             TCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred             CCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence            999999999999999987443211111      11122346677777777778644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.9e-22  Score=221.29  Aligned_cols=248  Identities=19%  Similarity=0.242  Sum_probs=167.0

Q ss_pred             CcEEEccCCccccccchhhhhhhccC--CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCccccc-CCcccCCCCCC
Q 036642          532 LIELDFSNNSISGSIFHFICYRAHEL--KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGN-LPISLGSLISL  608 (938)
Q Consensus       532 L~~L~ls~n~l~~~~~~~~~~~l~~l--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L  608 (938)
                      ++.++++++.+...       .+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|
T Consensus        49 ~~~l~l~~~~~~~~-------~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           49 WQTLDLTGKNLHPD-------VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             SSEEECTTCBCCHH-------HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             heeeccccccCCHH-------HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            55566666655421       12223  5677777777777766554 44577777777777777654 66667777777


Q ss_pred             cEEEccccccccccc-ccccCcCCcEEECCCC-ccCCC-CChhHhhhcCcccEEeeCCC-ccccc-CCccccCCC-ccCe
Q 036642          609 QSLHLRKNNLSGTIH-SLKNCTALLTLDVGEN-EFVEN-IPTWIGERFSRMVVLILRSN-KFHSL-LPKGLCDLA-FLQI  682 (938)
Q Consensus       609 ~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~  682 (938)
                      ++|++++|.+++..+ .+..+++|++|++++| .+++. ++..+. .+++|++|++++| ++++. ++..+..++ +|+.
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~  199 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  199 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence            777777777776655 6777777777777777 45542 443343 6777777777777 77654 456667777 7888


Q ss_pred             eecccc--ccc-cccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEe
Q 036642          683 VDLADN--NLS-GEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF  759 (938)
Q Consensus       683 L~Ls~N--~l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  759 (938)
                      |++++|  .++ +.+|..+..+++                                                  |+.|++
T Consensus       200 L~l~~~~~~~~~~~l~~~~~~~~~--------------------------------------------------L~~L~l  229 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLSTLVRRCPN--------------------------------------------------LVHLDL  229 (336)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTT--------------------------------------------------CSEEEC
T ss_pred             EEeCCCcccCCHHHHHHHHhhCCC--------------------------------------------------CCEEeC
Confidence            888877  343 344444444333                                                  478888


Q ss_pred             ecCc-cCccCchhccCccCCCEEeCcCcc-CcccCCccccccCCCCEEECCCCcccccCCccccCC-CCCCeEeCcCCcc
Q 036642          760 SKNN-FSGKIPLEVTNLKALQSFNLSNNF-FTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSL-TYLNHLNLSNNNL  836 (938)
Q Consensus       760 s~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l  836 (938)
                      ++|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++.   ..+..+ ..+..|++++|++
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l  305 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHF  305 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccC
Confidence            8888 777788888888999999999885 33222236788889999999988 332   234444 2366777888999


Q ss_pred             cccCCC
Q 036642          837 TGKIPS  842 (938)
Q Consensus       837 ~g~ip~  842 (938)
                      ++..|.
T Consensus       306 ~~~~~~  311 (336)
T 2ast_B          306 TTIARP  311 (336)
T ss_dssp             CCTTCS
T ss_pred             ccccCC
Confidence            887775

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=7.8e-23  Score=224.38  Aligned_cols=271  Identities=18%  Similarity=0.161  Sum_probs=148.8

Q ss_pred             CCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCC--CCCCEEeCCCCCCCCCcccccccC
Q 036642           63 EDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDL--KHLSYLDLSYNDFQGVQIPRFICS  140 (938)
Q Consensus        63 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~l~~  140 (938)
                      .-|.+|.++.|+.  ..++.+++++.               .+.   +..+..+  +++++|++++|.+.+. .+. +.+
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~---------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~   91 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGK---------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFS   91 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTC---------------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCC
T ss_pred             HHHHHHHHHhcCc--hhheeeccccc---------------cCC---HHHHHhhhhccceEEEcCCcccccc-chh-hcc
Confidence            4567899998863  34667777662               222   2334444  6777777777777653 333 446


Q ss_pred             CCCCcEEecCCCcCCCC-CCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCC-CCCCCcchhhhhCCCCCC
Q 036642          141 MGNLRYLNLSYTQFVGM-IPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV-NLSKASDWLRVTNTLPSL  218 (938)
Q Consensus       141 l~~L~~L~Ls~n~l~~~-~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~l~~L  218 (938)
                      +++|++|++++|.+++. +|..+.++++|++|++++|.+....+..+..+++|++|++++| .++.. .++..       
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~-------  163 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTL-------  163 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHH-------
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-HHHHH-------
Confidence            77777777777776654 5666677777777777777665544444555555555555555 33321 12223       


Q ss_pred             cEEEcCCCCCCCCCcccccCCCCCCEEECCCC-CCCCccCcccccCCC-CCCEEEccCC--ccc-CCCCccccCCCCCCE
Q 036642          219 VKLRLSRCQLHHLPPLAIANFSTLTTLDLLYN-QFDNSFVPNWVFGLI-QLVFLDLRRN--NFQ-GPIPEGLQNLTSLKH  293 (938)
Q Consensus       219 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~  293 (938)
                                       +.++++|++|++++| .+++..++..+..++ +|++|++++|  .++ +.+|..+..+++|++
T Consensus       164 -----------------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          164 -----------------LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  226 (336)
T ss_dssp             -----------------HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             -----------------HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence                             344445555555555 444322244444555 5555555555  233 234444555566666


Q ss_pred             EECcCCc-CCCccchhhhcCCCCCEEEccCCc-CCchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCccEE
Q 036642          294 LLLDSNR-FNSSIPNWLYRFNRLESLGVSNNS-LQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEIL  371 (938)
Q Consensus       294 L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L  371 (938)
                      |++++|. +++..+..+..+++|++|++++|. +.......++++++|+.|++++| +....-.       .+...++.|
T Consensus       227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~-------~l~~~l~~L  298 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ-------LLKEALPHL  298 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH-------HHHHHSTTS
T ss_pred             EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH-------HHHhhCcce
Confidence            6666665 444555555666666666666662 33333334556666666666666 3322111       111135556


Q ss_pred             EccCCcCccccccccCC
Q 036642          372 VLRGSSVSGHLTYKLGQ  388 (938)
Q Consensus       372 ~l~~n~l~~~~~~~l~~  388 (938)
                      ++++|.+++..|..++.
T Consensus       299 ~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          299 QINCSHFTTIARPTIGN  315 (336)
T ss_dssp             EESCCCSCCTTCSSCSS
T ss_pred             EEecccCccccCCcccc
Confidence            66777777766665553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.9e-21  Score=201.70  Aligned_cols=195  Identities=15%  Similarity=0.198  Sum_probs=103.9

Q ss_pred             CCCEEEcCCCcccccCCcccCCCCCCcEEEccccc-cccccc-ccccCcCCcEEECCC-CccCCCCChhHhhhcCcccEE
Q 036642          583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN-LSGTIH-SLKNCTALLTLDVGE-NEFVENIPTWIGERFSRMVVL  659 (938)
Q Consensus       583 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~-~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~~l~~L~~L  659 (938)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+ .+.++++|++|++++ |++.+..+..+. .+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-CCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEE
Confidence            56666666666665555556666666666666664 554444 455555555555555 554432222222 45555555


Q ss_pred             eeCCCcccccCCccccCCCccC---eeecccc-ccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccc
Q 036642          660 ILRSNKFHSLLPKGLCDLAFLQ---IVDLADN-NLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLED  735 (938)
Q Consensus       660 ~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (938)
                      ++++|++++ +|. +..+++|+   .|++++| .+++..+..|..+++|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            555555554 333 44555555   5666665 5554333334443333                               


Q ss_pred             eeeeecCcchhhhhhcccee-EEEeecCccCccCchhccCccCCCEEeCcCcc-CcccCCcccccc-CCCCEEECCCCcc
Q 036642          736 ALVVMKGRAAEYKCILNLVR-IIDFSKNNFSGKIPLEVTNLKALQSFNLSNNF-FTGRIPESIGAM-RSLESIDFSLNQL  812 (938)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~l-~~L~~LdLs~N~l  812 (938)
                                         + .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|+.||+++|++
T Consensus       158 -------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          158 -------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             -------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             -------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence                               4 5555666665 444443333566666666663 665445556666 6666666666666


Q ss_pred             cccCCccccCCCCCCeEeCcCC
Q 036642          813 SGEIPQSMSSLTYLNHLNLSNN  834 (938)
Q Consensus       813 ~~~ip~~l~~l~~L~~L~ls~N  834 (938)
                      ++ +|..  .+++|+.|+++++
T Consensus       218 ~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          218 TA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CC-CCCT--TCTTCSEEECTTC
T ss_pred             cc-CChh--HhccCceeeccCc
Confidence            53 3332  4455566666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.1e-20  Score=203.71  Aligned_cols=208  Identities=20%  Similarity=0.305  Sum_probs=142.3

Q ss_pred             eeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccC
Q 036642          563 LYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFV  642 (938)
Q Consensus       563 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~  642 (938)
                      +.+..+.+++.++  ...+++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++.
T Consensus        24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS
T ss_pred             HHhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC
Confidence            3444444443322  3345666666666666663 33 45666666777777666665444 666667777777777665


Q ss_pred             CCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhc
Q 036642          643 ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLY  722 (938)
Q Consensus       643 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~  722 (938)
                      + ++ .+. .+++|++|++++|++++. + .+..+++|+.|++++|.+++..+  +..+++                   
T Consensus        99 ~-~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-------------------  152 (308)
T 1h6u_A           99 N-VS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN-------------------  152 (308)
T ss_dssp             C-CG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-------------------
T ss_pred             C-ch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC-------------------
Confidence            4 33 333 577777777777777663 2 27778888888888888775433  333333                   


Q ss_pred             cCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCC
Q 036642          723 ASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSL  802 (938)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L  802 (938)
                                                     |+.|++++|++++ +|. +..+++|+.|++++|.+++..|  +..+++|
T Consensus       153 -------------------------------L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L  197 (308)
T 1h6u_A          153 -------------------------------LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNL  197 (308)
T ss_dssp             -------------------------------CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             -------------------------------ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCC
Confidence                                           3678888888885 444 8888889999999998885443  7888899


Q ss_pred             CEEECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642          803 ESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG  838 (938)
Q Consensus       803 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  838 (938)
                      ++|++++|++++..|  +..+++|++|++++|++++
T Consensus       198 ~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            999999999886543  7888889999999998876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.1e-20  Score=201.44  Aligned_cols=194  Identities=26%  Similarity=0.309  Sum_probs=109.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642          114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK  193 (938)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  193 (938)
                      .++++|++|++++|.++.  +| .+..+++|++|++++|.+++..+  +.++++|++|++++|++...  ..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            456677777777777773  44 46677777777777777775433  77777777777777776543  2455566666


Q ss_pred             EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEcc
Q 036642          194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLR  273 (938)
Q Consensus       194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  273 (938)
                      +|++++|.++.++    .+..+++|++|++++|.++++++  +..+++|++|++++|.+++                   
T Consensus       111 ~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-------------------  165 (308)
T 1h6u_A          111 TLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-------------------  165 (308)
T ss_dssp             EEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-------------------
T ss_pred             EEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-------------------
Confidence            6666666555542    14455555555555555555443  4445555555555555443                   


Q ss_pred             CCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCcc
Q 036642          274 RNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQ  351 (938)
Q Consensus       274 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  351 (938)
                            . +. +..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|.+++
T Consensus       166 ------~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 ------L-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             ------C-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             ------C-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence                  2 11 4444555555555555443222  4455555555555555554332  4555555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=4.1e-21  Score=199.27  Aligned_cols=203  Identities=17%  Similarity=0.183  Sum_probs=162.2

Q ss_pred             cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCc-CCCCCCcCCCCCCcccEEECCC-CcccccCccc
Q 036642          108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQ-FVGMIPPQLGNLSNLQYLDLSW-NFLYVENLWW  185 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~L~~L~~L~Ls~-n~i~~~~~~~  185 (938)
                      ++|. +..  +|++|++++|.++++ .+..+.++++|++|++++|. +++..+..|.++++|++|++++ |++....+..
T Consensus        25 ~ip~-~~~--~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           25 RIPS-LPP--STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             SCCC-CCT--TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccCC-CCC--cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            4555 333  899999999999964 34478899999999999997 8877777899999999999998 9999888889


Q ss_pred             cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc---EEEcCCC-CCCCCCcccccCCCCCC-EEECCCCCCCCccCccc
Q 036642          186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV---KLRLSRC-QLHHLPPLAIANFSTLT-TLDLLYNQFDNSFVPNW  260 (938)
Q Consensus       186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~  260 (938)
                      |.++++|++|++++|.++.++.    +..+++|+   +|++++| .++++++..|.++++|+ +|++++|.++. + +..
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i-~~~  174 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-V-QGY  174 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-E-CTT
T ss_pred             hCCCCCCCEEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-c-CHh
Confidence            9999999999999999988654    66677777   9999999 89888888888899999 99999888873 3 443


Q ss_pred             ccCCCCCCEEEccCCc-ccCCCCccccCC-CCCCEEECcCCcCCCccchhhhcCCCCCEEEccCC
Q 036642          261 VFGLIQLVFLDLRRNN-FQGPIPEGLQNL-TSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNN  323 (938)
Q Consensus       261 ~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  323 (938)
                      ....++|++|++++|+ +++..+..+..+ ++|++|++++|.+++ +|..  .+++|+.|+++++
T Consensus       175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            3334788888888884 776666677777 888888888888874 3332  5667777777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=5.7e-20  Score=186.13  Aligned_cols=161  Identities=24%  Similarity=0.278  Sum_probs=114.4

Q ss_pred             CCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEe
Q 036642          117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLD  196 (938)
Q Consensus       117 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  196 (938)
                      ++|++|++++|.++++ .+..++.+++|++|++++|++++..+..|.++++|++|++++|.+.......|.++++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            4899999999999864 455678899999999999999977777788999999999999988877766677777777777


Q ss_pred             CCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCc
Q 036642          197 LSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN  276 (938)
Q Consensus       197 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  276 (938)
                      +++|.++.++.  ..+..+++|++|++++|+++++++..+..+++|++|++++|.+.+        .+++|++|+++.|.
T Consensus       107 L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          107 LNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINK  176 (208)
T ss_dssp             CCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHH
T ss_pred             cCCCcCcccCH--hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHh
Confidence            77777766533  345566666666666666666666556666666666666665433        23455555555555


Q ss_pred             ccCCCCccccCC
Q 036642          277 FQGPIPEGLQNL  288 (938)
Q Consensus       277 l~~~~p~~l~~l  288 (938)
                      ++|.+|+.++.+
T Consensus       177 ~~g~ip~~~~~l  188 (208)
T 2o6s_A          177 HSGVVRNSAGSV  188 (208)
T ss_dssp             CTTTBBCTTSSB
T ss_pred             CCceeeccCccc
Confidence            555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=7.7e-20  Score=211.20  Aligned_cols=187  Identities=26%  Similarity=0.336  Sum_probs=108.7

Q ss_pred             CcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCC
Q 036642          559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGE  638 (938)
Q Consensus       559 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~  638 (938)
                      +++.|++++|++++ +|..+  .++|+.|++++|+++ .+|   ..+++|+.|+|++|++++ +|.+..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCC
Confidence            66777777777765 45433  256777777777766 455   345666777777776666 332333  666666666


Q ss_pred             CccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhh
Q 036642          639 NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQ  718 (938)
Q Consensus       639 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~  718 (938)
                      |++++ +|.    .+++|+.|++++|++++ +|.   .+++|+.|++++|++++ +|. +.  ++               
T Consensus       130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~---------------  181 (571)
T 3cvr_A          130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES---------------  181 (571)
T ss_dssp             SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT---------------
T ss_pred             CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC---------------
Confidence            66665 554    35666666666666665 443   34566666666666654 443 32  22               


Q ss_pred             hhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCC-------CEEeCcCccCccc
Q 036642          719 FLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKAL-------QSFNLSNNFFTGR  791 (938)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~l~~~  791 (938)
                                                         |+.|+|++|+|+ .+|. +..  +|       +.|+|++|.|+ .
T Consensus       182 -----------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~  221 (571)
T 3cvr_A          182 -----------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-H  221 (571)
T ss_dssp             -----------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-C
T ss_pred             -----------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-e
Confidence                                               245666666666 4555 443  45       66666666666 4


Q ss_pred             CCccccccCCCCEEECCCCcccccCCccccCC
Q 036642          792 IPESIGAMRSLESIDFSLNQLSGEIPQSMSSL  823 (938)
Q Consensus       792 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l  823 (938)
                      +|..+..+++|+.|||++|++++.+|..+..+
T Consensus       222 lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            56655556666666666666666666555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.4e-19  Score=209.02  Aligned_cols=210  Identities=20%  Similarity=0.264  Sum_probs=138.0

Q ss_pred             CCCCCCCCCCc-----cccce-eeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCC
Q 036642           56 LASWIGYEDCC-----AWAGV-VCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDF  129 (938)
Q Consensus        56 l~~W~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l  129 (938)
                      +.+|....++|     .|.|+ .|..  ++++.+++++.               .+.+ +|..+.  ++|++|+|++|.+
T Consensus        33 l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n---------------~L~~-lp~~l~--~~L~~L~Ls~N~l   92 (571)
T 3cvr_A           33 WDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRL---------------NLSS-LPDNLP--PQITVLEITQNAL   92 (571)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS---------------CCSC-CCSCCC--TTCSEEECCSSCC
T ss_pred             HHHHhccCCccccccchhhhcccccc--CCccEEEeCCC---------------CCCc-cCHhHc--CCCCEEECcCCCC
Confidence            34563335566     79999 7853  46888888873               4444 777663  6888888888888


Q ss_pred             CCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchh
Q 036642          130 QGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWL  209 (938)
Q Consensus       130 ~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  209 (938)
                      +  .+|   ..+++|++|++++|.+++ +|. +.+  +|++|++++|++..+..    .+++|+.|++++|.++      
T Consensus        93 ~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~------  153 (571)
T 3cvr_A           93 I--SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLT------  153 (571)
T ss_dssp             S--CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS------
T ss_pred             c--ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccC------
Confidence            8  366   457888888888888886 565 655  78888888777665332    3445555555555544      


Q ss_pred             hhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCC
Q 036642          210 RVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT  289 (938)
Q Consensus       210 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  289 (938)
                                          +++.    .+++|++|++++|.+++  +|. +.  ++|++|+|++|.++ .+|. +..  
T Consensus       154 --------------------~lp~----~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--  200 (571)
T 3cvr_A          154 --------------------MLPE----LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--  200 (571)
T ss_dssp             --------------------CCCC----CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS-SCCC-CC---
T ss_pred             --------------------cCCC----cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC-chhh-HHH--
Confidence                                4332    34455555555555554  233 33  56666666666665 4444 332  


Q ss_pred             CC-------CEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCC
Q 036642          290 SL-------KHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN  338 (938)
Q Consensus       290 ~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  338 (938)
                      +|       ++|++++|.++ .+|..+..+++|++|++++|.+++.+|..+..++.
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            45       88888888887 46777777888888888888888888888777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1e-18  Score=176.92  Aligned_cols=181  Identities=21%  Similarity=0.180  Sum_probs=131.4

Q ss_pred             CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCC
Q 036642          120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY  199 (938)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  199 (938)
                      +.++.+++.++  .+|..+  .++|++|++++|++++..+..|+++++|++|++++|++.......|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT--SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc--CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            56777888777  456544  56899999999999987777889999999999999999877777788888888888888


Q ss_pred             CCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccC
Q 036642          200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG  279 (938)
Q Consensus       200 n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  279 (938)
                      |.++.++.  ..+..+++|++|++++|+++++++..+.++++|++|++++|.+++.. +..+..+++|++|++++|.+.+
T Consensus        86 n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           86 NQLQSLPN--GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             SCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcCCccCH--hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCeec
Confidence            88776543  34567777777777777777777766777777777777777776532 4445666677777777665543


Q ss_pred             CCCccccCCCCCCEEECcCCcCCCccchhhhcCCC
Q 036642          280 PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNR  314 (938)
Q Consensus       280 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  314 (938)
                             .+++|++|+++.|.++|.+|.+++.++.
T Consensus       163 -------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 -------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                   3445666666666666666666555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.3e-19  Score=184.71  Aligned_cols=178  Identities=20%  Similarity=0.227  Sum_probs=142.8

Q ss_pred             cEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCC-ccccCCCccCeeeccccccccccchhhhcchhhhhcccc
Q 036642          632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLP-KGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSH  710 (938)
Q Consensus       632 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~  710 (938)
                      +.+++++|.+.. +|..+.   +.+++|++++|++++..+ ..|..+++|+.|++++|.+++..|..|..+++|      
T Consensus        14 ~~l~~s~n~l~~-iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCccc-CccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            467777777654 665442   456788888888888755 457889999999999999987777777776665      


Q ss_pred             ccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcc
Q 036642          711 AGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG  790 (938)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~  790 (938)
                                                                  +.|+|++|++++..|..++.+++|+.|+|++|++++
T Consensus        84 --------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  119 (220)
T 2v70_A           84 --------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC  119 (220)
T ss_dssp             --------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC
T ss_pred             --------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe
Confidence                                                        788999999998888889999999999999999999


Q ss_pred             cCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCC-CcCCCCCCCCC
Q 036642          791 RIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDAS-SYAGNDLCGAP  863 (938)
Q Consensus       791 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~-~~~~n~lc~~~  863 (938)
                      ..|..|+.+++|+.|||++|++++..|..+..+++|++|++++|+++|.++..+...++... .+.++..|+.|
T Consensus       120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P  193 (220)
T 2v70_A          120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKP  193 (220)
T ss_dssp             BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEES
T ss_pred             ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCC
Confidence            99999999999999999999999999999999999999999999999988754322222211 13445566554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1.1e-18  Score=192.01  Aligned_cols=222  Identities=15%  Similarity=0.137  Sum_probs=127.1

Q ss_pred             CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCC-cccCCCCCCcE-EEccccccccccc-ccccCcCCcEE
Q 036642          558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQS-LHLRKNNLSGTIH-SLKNCTALLTL  634 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~~-~l~~l~~L~~L  634 (938)
                      +++++|++++|+++...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.+.+|++++..+ .+.++++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            345666666666664444456666666666666666654443 34556665554 4445566665555 56666666666


Q ss_pred             ECCCCccCCCCChhHhhhcCcccEEeeCC-CcccccCCccccCCC-ccCeeeccccccccccchhhhcchhhhhcccccc
Q 036642          635 DVGENEFVENIPTWIGERFSRMVVLILRS-NKFHSLLPKGLCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAG  712 (938)
Q Consensus       635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~  712 (938)
                      ++++|++.+..+.... ...++..|++.+ +++....+..|..+. .++.|++++|+++ .+|.......+         
T Consensus       110 ~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~---------  178 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ---------  178 (350)
T ss_dssp             EEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEE---------
T ss_pred             cccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccc---------
Confidence            6666666553333322 445566666644 455554455555553 4677777777776 34433222222         


Q ss_pred             chhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCch-hccCccCCCEEeCcCccCccc
Q 036642          713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPL-EVTNLKALQSFNLSNNFFTGR  791 (938)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~~~  791 (938)
                                                               ++.+++++|+..+.||. .|+.+++|+.|||++|+|+ .
T Consensus       179 -----------------------------------------L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~  216 (350)
T 4ay9_X          179 -----------------------------------------LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S  216 (350)
T ss_dssp             -----------------------------------------EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-C
T ss_pred             -----------------------------------------hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-c
Confidence                                                     25666764333335554 4577777777777777777 3


Q ss_pred             CCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCc
Q 036642          792 IPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNN  835 (938)
Q Consensus       792 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  835 (938)
                      +|..  .+.+|+.|.+.++.--..+|. +.++++|+.++++++.
T Consensus       217 lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          217 LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence            4432  244566666555544446663 6777777777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=6.4e-19  Score=193.80  Aligned_cols=235  Identities=16%  Similarity=0.174  Sum_probs=164.5

Q ss_pred             ceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcE-EECC
Q 036642          561 QFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLT-LDVG  637 (938)
Q Consensus       561 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~-L~Ls  637 (938)
                      ++++.++++++ .+|..+  .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.++  .|.+++++.+ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45777777777 566554  3578888888888886656678888888888888888877665  6777777665 5555


Q ss_pred             CCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccc-ccccccc-hhhhcchhhhhccccccchh
Q 036642          638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN-NLSGEVP-RCIHNLRAMVTLNSHAGKAI  715 (938)
Q Consensus       638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~l~~~~~~~~  715 (938)
                      .|++.+..|..+. .+++|++|++++|++++..+..+.....+..+++.++ .+. .+| ..|..+.             
T Consensus        89 ~N~l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~-------------  153 (350)
T 4ay9_X           89 ANNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLS-------------  153 (350)
T ss_dssp             ETTCCEECTTSBC-CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSB-------------
T ss_pred             CCcccccCchhhh-hccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcc-------------
Confidence            6777654444443 6778888888888887766666666667777777654 343 333 2332221             


Q ss_pred             hhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcC-ccCcccCC-
Q 036642          716 QYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSN-NFFTGRIP-  793 (938)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~~~ip-  793 (938)
                                                          ..++.|+|++|+++ .||.......+|+.|++++ |.++ .+| 
T Consensus       154 ------------------------------------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~  195 (350)
T 4ay9_X          154 ------------------------------------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPN  195 (350)
T ss_dssp             ------------------------------------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCT
T ss_pred             ------------------------------------hhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCH
Confidence                                                12478999999999 6888777788999999986 5566 555 


Q ss_pred             ccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCc
Q 036642          794 ESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSY  854 (938)
Q Consensus       794 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~  854 (938)
                      +.|+.+++|+.||||+|+|+..-+..   +..|+.|.+.+++--..+|....+..+.....
T Consensus       196 ~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          196 DVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             TTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             HHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence            57899999999999999999544444   45566666666544457886655655544433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3.8e-18  Score=175.11  Aligned_cols=163  Identities=26%  Similarity=0.248  Sum_probs=130.8

Q ss_pred             CCCCCCCCccccceeeCCCCCcEEEEecCCCCCccCCccCCCCCCcccCccccCCccCCCCCCEEeCCCCCCCCCccccc
Q 036642           58 SWIGYEDCCAWAGVVCDNVTGHIVELNLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRF  137 (938)
Q Consensus        58 ~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~  137 (938)
                      .|+.....|.|.+|.|+..                            -.+.+|..+.  ++|++|+|++|.++++ .|..
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~----------------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~   59 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSK----------------------------RHASVPAGIP--TNAQILYLHDNQITKL-EPGV   59 (229)
T ss_dssp             CCCCTTCEEETTEEECTTS----------------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-CTTT
T ss_pred             ccCCCCCEEeCCEeEccCC----------------------------CcCccCCCCC--CCCCEEEcCCCccCcc-CHHH
Confidence            3443388999999999641                            1234555554  7899999999999975 6788


Q ss_pred             ccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCC
Q 036642          138 ICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPS  217 (938)
Q Consensus       138 l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~  217 (938)
                      +..+++|++|+|++|++....+..|.++++|++|+|++|++.......|..+++|++|++++|+++.++   ..+..+++
T Consensus        60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~  136 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP---RGIERLTH  136 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC---TTGGGCTT
T ss_pred             hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC---cccccCCC
Confidence            999999999999999998777777899999999999999999888888888889999999888888654   34567778


Q ss_pred             CcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCC
Q 036642          218 LVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN  254 (938)
Q Consensus       218 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  254 (938)
                      |++|++++|+++++++..+..+++|+.|++++|.+..
T Consensus       137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            8888888888887777777777777777777777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=9.6e-19  Score=178.30  Aligned_cols=157  Identities=18%  Similarity=0.232  Sum_probs=133.8

Q ss_pred             cEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccc
Q 036642          632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHA  711 (938)
Q Consensus       632 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~  711 (938)
                      +.++++++.++. +|..+   .++++.|++++|++++..+..|..+++|+.|++++|++++..|..|..+++|       
T Consensus        14 ~~v~c~~~~l~~-iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCSS-CCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcCc-CCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            466777776654 56543   2578889999999888888888999999999999999998888888777665       


Q ss_pred             cchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCccc
Q 036642          712 GKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGR  791 (938)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~  791 (938)
                                                                 +.|+|++|++++..+..+..+++|+.|+|++|++++.
T Consensus        83 -------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~  119 (220)
T 2v9t_B           83 -------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL  119 (220)
T ss_dssp             -------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             -------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence                                                       7889999999955445578999999999999999999


Q ss_pred             CCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCC
Q 036642          792 IPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       792 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      .|..|+.+++|+.|||++|++++..|..+..+++|++|++++|++.|.++.
T Consensus       120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            999999999999999999999988888899999999999999999987653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=2.9e-18  Score=182.97  Aligned_cols=189  Identities=19%  Similarity=0.255  Sum_probs=102.4

Q ss_pred             cceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCC
Q 036642          560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN  639 (938)
Q Consensus       560 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N  639 (938)
                      +..+.+..+.+++..+  +..+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence            3344555555554322  34556666777777666633 3 35566666666666666655443 555555555555555


Q ss_pred             ccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhh
Q 036642          640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQF  719 (938)
Q Consensus       640 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~  719 (938)
                      ++.+ +|                          .+..+++|+.|++++|++++.  +.+..+++                
T Consensus       101 ~l~~-~~--------------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~----------------  135 (291)
T 1h6t_A          101 KVKD-LS--------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQ----------------  135 (291)
T ss_dssp             CCCC-GG--------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTT----------------
T ss_pred             cCCC-Ch--------------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCC----------------
Confidence            5443 22                          234444445555555544421  11222222                


Q ss_pred             hhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCcccccc
Q 036642          720 LLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM  799 (938)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l  799 (938)
                                                        |+.|++++|++++.  ..++.+++|+.|++++|++++..|  ++.+
T Consensus       136 ----------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l  177 (291)
T 1h6t_A          136 ----------------------------------LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL  177 (291)
T ss_dssp             ----------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             ----------------------------------CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence                                              24555555555532  345666666666666666664433  6666


Q ss_pred             CCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccc
Q 036642          800 RSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG  838 (938)
Q Consensus       800 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  838 (938)
                      ++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus       178 ~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          178 TKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             TTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            666666666666664 33 36666666666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=1.4e-17  Score=170.79  Aligned_cols=157  Identities=20%  Similarity=0.249  Sum_probs=131.2

Q ss_pred             CcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhcccc
Q 036642          631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSH  710 (938)
Q Consensus       631 L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~  710 (938)
                      -+.++.+++.+. .+|..+   .++|++|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            455677666654 366543   3778888888888888888888889999999999999875555556665554      


Q ss_pred             ccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcc
Q 036642          711 AGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG  790 (938)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~  790 (938)
                                                                  +.|+|++|++++..+..+..+++|+.|+|++|+++ 
T Consensus        91 --------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-  125 (229)
T 3e6j_A           91 --------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-  125 (229)
T ss_dssp             --------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             --------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence                                                        78899999999766677899999999999999999 


Q ss_pred             cCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCC
Q 036642          791 RIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       791 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      .+|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++.|.++.
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            8899999999999999999999987778899999999999999999998873

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=2.1e-20  Score=217.46  Aligned_cols=203  Identities=18%  Similarity=0.173  Sum_probs=113.7

Q ss_pred             ccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcE
Q 036642          555 HELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLT  633 (938)
Q Consensus       555 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~  633 (938)
                      ..+++|+.|++++|+++ .+|..++++++|++|++++|......|.           .+..+...+.+| .+.++++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhccc
Confidence            34677788888888876 6777788888888888766542111110           011122334444 5555666666


Q ss_pred             EE-CCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhcccccc
Q 036642          634 LD-VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAG  712 (938)
Q Consensus       634 L~-Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~  712 (938)
                      |+ ++.|.            +..|+.+.+.+|.++...+      ..|+.|++++|.+++ +|. ++.+++|        
T Consensus       414 L~~l~~n~------------~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L--------  465 (567)
T 1dce_A          414 VDPMRAAY------------LDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV--------  465 (567)
T ss_dssp             HCGGGHHH------------HHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC--------
T ss_pred             Ccchhhcc------------cchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC--------
Confidence            55 44332            2233334444444443221      125556666666653 443 4444333        


Q ss_pred             chhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccC
Q 036642          713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI  792 (938)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i  792 (938)
                                                                +.|+|++|+++ .+|..++++++|+.|+|++|.|++ +
T Consensus       466 ------------------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l  501 (567)
T 1dce_A          466 ------------------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V  501 (567)
T ss_dssp             ------------------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred             ------------------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence                                                      45566666666 566666666666666666666664 4


Q ss_pred             CccccccCCCCEEECCCCcccccC-CccccCCCCCCeEeCcCCcccccCCC
Q 036642          793 PESIGAMRSLESIDFSLNQLSGEI-PQSMSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       793 p~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      | .++.+++|+.|+|++|++++.+ |..+..+++|++|++++|++++.+|.
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            5 5666666666666666666555 66666666666666666666665443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=9.9e-18  Score=178.81  Aligned_cols=171  Identities=21%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc
Q 036642          140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV  219 (938)
Q Consensus       140 ~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~  219 (938)
                      .+++|++|++++|.+... + .+..+++|++|++++|++....+  +..+++|++|++++|.++.++    .+..+++|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS----SLKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG----GGTTCTTCC
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh----hhccCCCCC
Confidence            344555555555554422 2 24445555555555554443332  444444444444444444421    244555555


Q ss_pred             EEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCC
Q 036642          220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN  299 (938)
Q Consensus       220 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  299 (938)
                      +|++++|+++++  ..+..+++|++|++++|.+++   ...+..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc---chhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            555555555554  245555666666666666554   2345555666666666665554332  555666666666666


Q ss_pred             cCCCccchhhhcCCCCCEEEccCCcCCc
Q 036642          300 RFNSSIPNWLYRFNRLESLGVSNNSLQG  327 (938)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~  327 (938)
                      .+++. + .+..+++|+.|++++|.+..
T Consensus       189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          189 HISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            65542 2 25556666666666665543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=9.7e-18  Score=170.83  Aligned_cols=157  Identities=16%  Similarity=0.208  Sum_probs=115.7

Q ss_pred             CEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCC
Q 036642          585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSN  664 (938)
Q Consensus       585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n  664 (938)
                      +.+++++|.++ .+|..+.  +.++.|+|++|++++..                       |...+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~-----------------------~~~~~~~l~~L~~L~L~~N   67 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLE-----------------------ATGIFKKLPQLRKINFSNN   67 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEEC-----------------------CCCCGGGCTTCCEEECCSS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccC-----------------------chhhhccCCCCCEEECCCC
Confidence            46777777766 3555442  34456666666655443                       2222225566666666666


Q ss_pred             cccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcc
Q 036642          665 KFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRA  744 (938)
Q Consensus       665 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (938)
                      ++++..+..|..+++|+.|++++|.+++..|..|..+++|                                        
T Consensus        68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------------------------  107 (220)
T 2v70_A           68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL----------------------------------------  107 (220)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC----------------------------------------
T ss_pred             cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC----------------------------------------
Confidence            6666666677778888888888888887766666666555                                        


Q ss_pred             hhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCC
Q 036642          745 AEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIP  817 (938)
Q Consensus       745 ~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip  817 (938)
                                +.|+|++|++++..|..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++.+..+
T Consensus       108 ----------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          108 ----------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             ----------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ----------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence                      678888999988888889999999999999999998889999999999999999999987655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.6e-17  Score=194.17  Aligned_cols=129  Identities=26%  Similarity=0.344  Sum_probs=75.8

Q ss_pred             CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEEC
Q 036642          557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDV  636 (938)
Q Consensus       557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L  636 (938)
                      +++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+++ ++.+..+++|+.|+|
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEe
Confidence            4556666666666653 22 35566666666666666664433  5566666666666666654 335666666666666


Q ss_pred             CCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccc
Q 036642          637 GENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP  695 (938)
Q Consensus       637 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  695 (938)
                      ++|++.+ ++ .+. .+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++..|
T Consensus       117 s~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          117 EHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             TTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             cCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            6666654 22 233 466666666666666654  455666666666666666665444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.4e-17  Score=194.61  Aligned_cols=172  Identities=23%  Similarity=0.279  Sum_probs=83.1

Q ss_pred             cCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCC
Q 036642          114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLK  193 (938)
Q Consensus       114 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  193 (938)
                      ..+++|++|++++|.+..  +| .+..+++|++|+|++|.+.+..|  +.++++|++|+|++|.+.              
T Consensus        40 ~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~--------------  100 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK--------------  100 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC--------------
T ss_pred             hcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC--------------
Confidence            344455555555555542  22 24445555555555555553332  445555555555555443              


Q ss_pred             EEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEcc
Q 036642          194 DLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLR  273 (938)
Q Consensus       194 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  273 (938)
                                .++    .+..+++|++|+|++|.++++  ..+..+++|+.|+|++|.+.+   ...+..+++|+.|+|+
T Consensus       101 ----------~l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A          101 ----------DLS----SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLE  161 (605)
T ss_dssp             ----------CCT----TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC---CGGGGSCTTCSEEECC
T ss_pred             ----------CCh----hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC---chhhcccCCCCEEECc
Confidence                      321    233444444444444444443  134445555555555555544   1344455555555555


Q ss_pred             CCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCc
Q 036642          274 RNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG  327 (938)
Q Consensus       274 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  327 (938)
                      +|.+.+..|  +..+++|++|+|++|.+++.  ..+..+++|+.|+|++|.+.+
T Consensus       162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          162 DNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            555554333  45555555555555555432  235555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=4.5e-20  Score=214.62  Aligned_cols=201  Identities=19%  Similarity=0.229  Sum_probs=140.0

Q ss_pred             CCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCe
Q 036642          603 GSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQI  682 (938)
Q Consensus       603 ~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  682 (938)
                      ..+++|+.|+|++|+++..++.++++++|++|++++|.....+|..            +..+...+.+|..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------------l~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL------------MRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH------------HHhcccccCCHHHHHHHHhccc
Confidence            3456666777777776643336777777777777555321111111            1122344556677777777777


Q ss_pred             ee-ccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeec
Q 036642          683 VD-LADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSK  761 (938)
Q Consensus       683 L~-Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~  761 (938)
                      |+ ++.|.+.           .|..+.+..+.....                                ....|+.|+|++
T Consensus       414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l--------------------------------~~~~L~~L~Ls~  450 (567)
T 1dce_A          414 VDPMRAAYLD-----------DLRSKFLLENSVLKM--------------------------------EYADVRVLHLAH  450 (567)
T ss_dssp             HCGGGHHHHH-----------HHHHHHHHHHHHHHH--------------------------------HHTTCSEEECTT
T ss_pred             Ccchhhcccc-----------hhhhhhhhccccccc--------------------------------CccCceEEEecC
Confidence            77 6666543           121111111110000                                011358899999


Q ss_pred             CccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccC-
Q 036642          762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKI-  840 (938)
Q Consensus       762 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i-  840 (938)
                      |++++ +|. ++.+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|+|++ +| .+..+++|++|++++|++++.+ 
T Consensus       451 n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~  525 (567)
T 1dce_A          451 KDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAA  525 (567)
T ss_dssp             SCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred             CCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCC
Confidence            99996 787 999999999999999999 899999999999999999999997 78 8999999999999999999875 


Q ss_pred             CCC-CcCCCcCCCCcCCCCCCCCC
Q 036642          841 PSS-TQLQSFDASSYAGNDLCGAP  863 (938)
Q Consensus       841 p~~-~~~~~~~~~~~~~n~lc~~~  863 (938)
                      |.. +.+..+....+.+|.+++.|
T Consensus       526 p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          526 IQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             TGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cHHHhcCCCCCEEEecCCcCCCCc
Confidence            643 56667777778888887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=8e-18  Score=185.78  Aligned_cols=115  Identities=24%  Similarity=0.188  Sum_probs=71.3

Q ss_pred             CEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccc-cCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeC
Q 036642          585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLK-NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILR  662 (938)
Q Consensus       585 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~  662 (938)
                      +.++++++.++ .+|..+.  +.++.|+|++|++++..+ .+. ++++|+.|+|++|++.+..+..+. .+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence            57888888888 5676553  457888888888887666 555 677777777777766653333333 45566666666


Q ss_pred             CCcccccCCccccCCCccCeeeccccccccccchhhhcchh
Q 036642          663 SNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRA  703 (938)
Q Consensus       663 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  703 (938)
                      +|++++..+..|..+++|+.|+|++|++++..|..|..+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  137 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ  137 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc
Confidence            66665555555555555555555555555444444444333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1.4e-16  Score=162.23  Aligned_cols=128  Identities=20%  Similarity=0.193  Sum_probs=62.4

Q ss_pred             CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCC
Q 036642          120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY  199 (938)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  199 (938)
                      +.++++++.++  .+|..+.  ++|++|++++|++++..+..|.++++|++|+|++|++....+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~--~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT--EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS--SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC--cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            34555555555  3444332  4566666666666555555566666666666666655555444444444444444444


Q ss_pred             CCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCC
Q 036642          200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD  253 (938)
Q Consensus       200 n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  253 (938)
                      |.++.++.  ..+..+++|++|+|++|+++++++..|..+++|++|+|++|.++
T Consensus        90 N~l~~l~~--~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           90 NKITELPK--SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             SCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCccCH--hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            44443322  22334444444444444444444444444444444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=1.7e-17  Score=165.23  Aligned_cols=109  Identities=22%  Similarity=0.326  Sum_probs=82.4

Q ss_pred             eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642          755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN  834 (938)
Q Consensus       755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  834 (938)
                      +.|+|++|++++.+|..++++++|+.|+|++|++++..|..|+++++|++|||++|++++.+|..+..+++|++|++++|
T Consensus        57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            67788888888777888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cccccCCCCCcCCCcCCCCcCCC-CCCCCC
Q 036642          835 NLTGKIPSSTQLQSFDASSYAGN-DLCGAP  863 (938)
Q Consensus       835 ~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~  863 (938)
                      +++|.+|..+...++....+.++ ..|+.|
T Consensus       137 ~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          137 PFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             CccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            88888774332222222233444 556554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1e-16  Score=176.90  Aligned_cols=176  Identities=24%  Similarity=0.190  Sum_probs=91.5

Q ss_pred             CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCC-CCCcccEEECCCCcccccCccccCCCCCCCEEeCC
Q 036642          120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLG-NLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLS  198 (938)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  198 (938)
                      ++++++++.++  .+|..+.  +.+++|+|++|++++..+..+. ++++|++|+|++|++....+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~--~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP--NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS--SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC--ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            35556666555  3454332  3456666666666655555555 66666666666666655554445555555555544


Q ss_pred             CCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCccc
Q 036642          199 YVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQ  278 (938)
Q Consensus       199 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  278 (938)
                      +|+++.++.  ..+..+++|++|+|++|+++++.+..|.++++|++|+|++|++                         +
T Consensus        97 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-------------------------~  149 (361)
T 2xot_A           97 SNHLHTLDE--FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-------------------------S  149 (361)
T ss_dssp             SSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-------------------------C
T ss_pred             CCcCCcCCH--HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-------------------------C
Confidence            444443321  2334444444444444444444444444444444444444444                         4


Q ss_pred             CCCCccc---cCCCCCCEEECcCCcCCCccchhhhcCCC--CCEEEccCCcCC
Q 036642          279 GPIPEGL---QNLTSLKHLLLDSNRFNSSIPNWLYRFNR--LESLGVSNNSLQ  326 (938)
Q Consensus       279 ~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~  326 (938)
                      +..+..+   ..+++|++|++++|.+++..+..+..++.  ++.|++++|.+.
T Consensus       150 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            2222222   34566666666666666555555666665  366777777665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=8.6e-17  Score=160.97  Aligned_cols=81  Identities=19%  Similarity=0.313  Sum_probs=51.4

Q ss_pred             eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642          755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN  834 (938)
Q Consensus       755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  834 (938)
                      +.|++++|++++..|..++.+++|+.|++++|.+.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|++++|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            556666666666666666677777777777776333455 56777777777777777765 33 5667777777777777


Q ss_pred             cccc
Q 036642          835 NLTG  838 (938)
Q Consensus       835 ~l~g  838 (938)
                      ++.+
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            7653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=8.7e-18  Score=201.75  Aligned_cols=215  Identities=19%  Similarity=0.173  Sum_probs=116.3

Q ss_pred             CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCC---------ccchhhhcCCCCCEEEcCCCcccccCCc
Q 036642          530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG---------ELTDCWMNYQNLMILDLSNNKFTGNLPI  600 (938)
Q Consensus       530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~  600 (938)
                      +.++.|++.+|.+.....          ..++.++|+.|.+.+         ..+..+..++.|+.|+|++|.+. .+|.
T Consensus       173 ~~~~~l~L~~n~~~~~~~----------~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~  241 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ----------ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISA  241 (727)
T ss_dssp             -----------------------------------------------------------CCCCCCEEECTTSCCS-CCCG
T ss_pred             CccceEEeeCCCCCcchh----------hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCCh
Confidence            567888898888776221          224444444444432         45777888899999999999988 6777


Q ss_pred             ccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCc
Q 036642          601 SLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAF  679 (938)
Q Consensus       601 ~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  679 (938)
                      .+..+++|++|+|++|.++ .+| .+.++++|++|+|++|+++ .+|..+. .+++|++|+|++|.++ .+|..|+.+++
T Consensus       242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~  317 (727)
T 4b8c_D          242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCN  317 (727)
T ss_dssp             GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTT
T ss_pred             hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCC
Confidence            7778999999999999998 455 8889999999999999988 6788877 7899999999999887 57878999999


Q ss_pred             cCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEe
Q 036642          680 LQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF  759 (938)
Q Consensus       680 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  759 (938)
                      |+.|+|++|++++.+|..+..+....                                                 ..++|
T Consensus       318 L~~L~L~~N~l~~~~p~~~~~~~~~~-------------------------------------------------~~l~l  348 (727)
T 4b8c_D          318 LQFLGVEGNPLEKQFLKILTEKSVTG-------------------------------------------------LIFYL  348 (727)
T ss_dssp             CCCEECTTSCCCSHHHHHHHHHHHHH-------------------------------------------------HHHHH
T ss_pred             ccEEeCCCCccCCCChHHHhhcchhh-------------------------------------------------hHHhh
Confidence            99999999999988888776543220                                                 12467


Q ss_pred             ecCccCccCchhccCccCCCEEeCcCc--------cCcccCCccccccCCCCEEECCCCcccc
Q 036642          760 SKNNFSGKIPLEVTNLKALQSFNLSNN--------FFTGRIPESIGAMRSLESIDFSLNQLSG  814 (938)
Q Consensus       760 s~N~l~g~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~~~~l~~L~~LdLs~N~l~~  814 (938)
                      ++|.++|.+|..+      +.|++++|        .+.+.++..+.++..+....+++|-+.+
T Consensus       349 ~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          349 RDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             HHCCCCCCCCCC-----------------------------------------------CCCG
T ss_pred             ccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence            8888888888644      44566666        3444444445555556666666666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.8e-17  Score=199.05  Aligned_cols=140  Identities=22%  Similarity=0.255  Sum_probs=77.7

Q ss_pred             hhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCC
Q 036642          553 RAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTAL  631 (938)
Q Consensus       553 ~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L  631 (938)
                      .+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.++ .+| .+.++++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            3444555666666666655 44444555666666666666665 55555666666666666666665 333 55666666


Q ss_pred             cEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCc-cCeeeccccccccccchh
Q 036642          632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAF-LQIVDLADNNLSGEVPRC  697 (938)
Q Consensus       632 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~p~~  697 (938)
                      ++|+|++|.+. .+|..+. .+++|++|+|++|++++.+|..+..+.. +..+++++|.++|.+|..
T Consensus       296 ~~L~L~~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          296 KYFYFFDNMVT-TLPWEFG-NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             SEEECCSSCCC-CCCSSTT-SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CEEECCCCCCC-ccChhhh-cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            66666666554 4555544 5566666666666666655555543321 223556666666555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.4e-16  Score=159.35  Aligned_cols=155  Identities=18%  Similarity=0.211  Sum_probs=106.9

Q ss_pred             hcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccE
Q 036642          579 MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVV  658 (938)
Q Consensus       579 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~  658 (938)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++                       .  +..+. .+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-----------------------~--~~~l~-~l~~L~~   92 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-----------------------N--YNPIS-GLSNLER   92 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-----------------------C--CGGGT-TCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-----------------------c--chhhh-cCCCCCE
Confidence            44455666666666555 333 3555555555555555332                       1  12333 5677777


Q ss_pred             EeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceee
Q 036642          659 LILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALV  738 (938)
Q Consensus       659 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (938)
                      |++++|++++..+..+..+++|+.|++++|.+++..|..+..+++|                                  
T Consensus        93 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L----------------------------------  138 (197)
T 4ezg_A           93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV----------------------------------  138 (197)
T ss_dssp             EEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC----------------------------------
T ss_pred             EEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC----------------------------------
Confidence            7777777777677778888888888888888887777777666554                                  


Q ss_pred             eecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccc
Q 036642          739 VMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG  814 (938)
Q Consensus       739 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~  814 (938)
                                      +.|++++|++.+.+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       139 ----------------~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          139 ----------------NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ----------------CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ----------------CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence                            678888888444666 68889999999999999985 44 78899999999999999864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=3.8e-17  Score=171.41  Aligned_cols=168  Identities=18%  Similarity=0.226  Sum_probs=93.3

Q ss_pred             CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642          115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD  194 (938)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  194 (938)
                      .+.+++.++++++.+++  ++ .+..+++|++|++++|.++. +| .++.+++|++|++++|++....+  +.++++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            45566777788887774  34 46677888888888887773 44 57777777777777777765544  566666666


Q ss_pred             EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642          195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR  274 (938)
Q Consensus       195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  274 (938)
                      |++++|+++.++..    .. ++|++|++++|++++++  .+..+++|++|++++|++++.   ..+..+++|++|++++
T Consensus        90 L~L~~N~l~~l~~~----~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           90 LSVNRNRLKNLNGI----PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHG  159 (263)
T ss_dssp             EECCSSCCSCCTTC----CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTT
T ss_pred             EECCCCccCCcCcc----cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCC
Confidence            66666666554321    11 45555555555555432  344455555555555544431   1334444444444444


Q ss_pred             CcccCCCCccccCCCCCCEEECcCCcC
Q 036642          275 NNFQGPIPEGLQNLTSLKHLLLDSNRF  301 (938)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l  301 (938)
                      |.+++.  ..+..+++|++|++++|.+
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcc
Confidence            444432  2333344444444444433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=1.5e-16  Score=158.18  Aligned_cols=155  Identities=20%  Similarity=0.295  Sum_probs=120.5

Q ss_pred             cEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCc-cccCCCccCeeeccccccccccchhhhcchhhhhcccc
Q 036642          632 LTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK-GLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSH  710 (938)
Q Consensus       632 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~  710 (938)
                      +.+++++|.+ +.+|..+.   .++++|++++|++++..+. .+..+++|+.|++++|.+++..|..|..+++|      
T Consensus        11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            5677777776 34666543   3788888888888876664 47888999999999999998888888777665      


Q ss_pred             ccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcc
Q 036642          711 AGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG  790 (938)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~  790 (938)
                                                                  +.|+|++|++++..|..++++++|+.|+|++|++++
T Consensus        81 --------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  116 (192)
T 1w8a_A           81 --------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             --------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             --------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence                                                        788999999998888889999999999999999999


Q ss_pred             cCCccccccCCCCEEECCCCcccccCCcc-ccCCCCCCeEeCcCCcccccCCC
Q 036642          791 RIPESIGAMRSLESIDFSLNQLSGEIPQS-MSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       791 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      .+|+.|+.+++|++|+|++|++++..+.. +.  ..++...+..+...|..|.
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred             eCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCCh
Confidence            99999999999999999999999876521 11  1122234455555565564

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=1.2e-16  Score=167.49  Aligned_cols=169  Identities=21%  Similarity=0.238  Sum_probs=106.0

Q ss_pred             CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc
Q 036642          140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV  219 (938)
Q Consensus       140 ~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~  219 (938)
                      .+.+++.++++++.+++. + .+..+++|++|++++|.+....  .+..+++|++|++++|+++.++.    +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP----LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh----hccCCCCC
Confidence            456677888888888744 3 5778888888888888877553  56677777777777777766543    56667777


Q ss_pred             EEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCC
Q 036642          220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN  299 (938)
Q Consensus       220 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  299 (938)
                      +|++++|+++++++..  . ++|++|++++|++++   ...+..+++|++|++++|++++. + .+..+++|++|++++|
T Consensus        89 ~L~L~~N~l~~l~~~~--~-~~L~~L~L~~N~l~~---~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           89 ELSVNRNRLKNLNGIP--S-ACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             EEECCSSCCSCCTTCC--C-SSCCEEECCSSCCSB---SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred             EEECCCCccCCcCccc--c-CcccEEEccCCccCC---ChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCC
Confidence            7777777766654322  2 666666666666654   23455566666666666665543 2 4555555555555555


Q ss_pred             cCCCccchhhhcCCCCCEEEccCCcCC
Q 036642          300 RFNSSIPNWLYRFNRLESLGVSNNSLQ  326 (938)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~n~l~  326 (938)
                      .+++.  ..+..+++|++|++++|.+.
T Consensus       161 ~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          161 EITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             cCcch--HHhccCCCCCEEeCCCCccc
Confidence            55543  34455555555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=151.53  Aligned_cols=132  Identities=23%  Similarity=0.314  Sum_probs=107.5

Q ss_pred             cEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccce
Q 036642          657 VVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDA  736 (938)
Q Consensus       657 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (938)
                      +.+++++|+++. +|..+  .++|+.|++++|.++ .+|..|.++++|                                
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            355666666553 44433  256888888888887 667666665554                                


Q ss_pred             eeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccC
Q 036642          737 LVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEI  816 (938)
Q Consensus       737 ~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i  816 (938)
                                        +.|+|++|++++..|..|.++++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..
T Consensus        57 ------------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           57 ------------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             ------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             ------------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence                              78889999999877788999999999999999999888889999999999999999999777


Q ss_pred             CccccCCCCCCeEeCcCCcccccCCC
Q 036642          817 PQSMSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       817 p~~l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      +..|..+++|++|++++|++.|.++.
T Consensus       119 ~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A          119 EGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhhhhcCccccEEEeCCCCeecCCcC
Confidence            77899999999999999999987763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=2e-16  Score=172.27  Aligned_cols=294  Identities=15%  Similarity=0.086  Sum_probs=174.7

Q ss_pred             ccccCCcc--CCCCCCEEeCCCCCCCCCcccccccC-CCCCcEEecCCCcCC--CCCCcCCCCCCcccEEECCCCccccc
Q 036642          107 GKVNPSLL--DLKHLSYLDLSYNDFQGVQIPRFICS-MGNLRYLNLSYTQFV--GMIPPQLGNLSNLQYLDLSWNFLYVE  181 (938)
Q Consensus       107 g~l~~~l~--~l~~L~~L~Ls~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~~~~L~~L~~L~Ls~n~i~~~  181 (938)
                      |.++..+.  .+.+++.|+++++ +....+ ..+.. +++|++|||++|++.  ...+   +.++.++.+.+..|   .+
T Consensus        13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~---~I   84 (329)
T 3sb4_A           13 GTLISMMTEEEANSITHLTLTGK-LNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN---FV   84 (329)
T ss_dssp             TCGGGGSCHHHHHHCSEEEEEEE-ECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT---EE
T ss_pred             CcHHhhccchhhCceeEEEEecc-ccHHHH-HHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccc---cc
Confidence            34444443  3667888888764 221111 22333 788999999999887  2222   22233455555555   34


Q ss_pred             CccccCC--------CCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCC-
Q 036642          182 NLWWLPG--------LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQF-  252 (938)
Q Consensus       182 ~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l-  252 (938)
                      ...+|.+        +++|+.+++.. .++.+++  .+|.++++|+.+++++|.+..+++..|.++.++..+....+.. 
T Consensus        85 ~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~--~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           85 PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED--AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT--TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred             CHHHhcccccccccccCCCcEEECCc-cccchhH--HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence            5566777        88888888888 7777654  6788888888888888888888888888888887777665321 


Q ss_pred             --CCccCcccccCCCCCC-EEEccCCcccCCCCccc----cCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcC
Q 036642          253 --DNSFVPNWVFGLIQLV-FLDLRRNNFQGPIPEGL----QNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSL  325 (938)
Q Consensus       253 --~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  325 (938)
                        ...+....+.++..|+ .+++....   .++..+    ....+++.+.+.++-...........+++|+.+++++|++
T Consensus       162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i  238 (329)
T 3sb4_A          162 RFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA  238 (329)
T ss_dssp             HTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred             hccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc
Confidence              0011133455566666 45444321   122211    1234555555554322111111112366777777777766


Q ss_pred             CchhhHhhhccCCCCeeecCCCcCccchhhHHHhhhcccccCcc-EEEccCCcCccccccccCCCCCccEEEccCCeecc
Q 036642          326 QGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLE-ILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG  404 (938)
Q Consensus       326 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  404 (938)
                      +......|.++++|+.+++..| +....+.    .+..+. +|+ .+.+.+ .++...+..|.+|++|+.++++.|+++.
T Consensus       239 ~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~-~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          239 TTIPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCG-RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             CEECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCT-TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             ceecHhhhhCCCCCCEEECCcc-cceehHH----HhhCCh-hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            6666666777777777777665 4433333    222233 455 555555 4555555667777788888877777776


Q ss_pred             cccccccCCCCCcEEEc
Q 036642          405 PIPFSLGHLSTLQFIDL  421 (938)
Q Consensus       405 ~~~~~l~~l~~L~~L~L  421 (938)
                      ..+.+|.++++|+.++.
T Consensus       312 I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          312 LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECTTTTCTTCCCCEEEC
T ss_pred             cchhhhcCCcchhhhcc
Confidence            66667777777777753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=6e-16  Score=168.47  Aligned_cols=218  Identities=12%  Similarity=0.043  Sum_probs=139.9

Q ss_pred             CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccc----ccccc-ccccCcCC
Q 036642          557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL----SGTIH-SLKNCTAL  631 (938)
Q Consensus       557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~~-~l~~l~~L  631 (938)
                      |++|+.+++.+ .++...+.+|.+|++|+.+++++|.+....+..|.++.++..+.+..+..    ...-. .+.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            88899999988 78767777888899999999999988877788888887777777666332    11122 56667777


Q ss_pred             c-EEECCCCccCCCCChhHhhh---cCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhc
Q 036642          632 L-TLDVGENEFVENIPTWIGER---FSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL  707 (938)
Q Consensus       632 ~-~L~Ls~N~l~~~~p~~~~~~---l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  707 (938)
                      + .+++...   +.++..++..   ..++..+.+.++-...........+++|+.+++++|+++...+.+|.++.+|   
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---  252 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---  252 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence            6 5555443   2344433322   3445555555432111111111136677777777777764444456666555   


Q ss_pred             cccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCC-EEeCcCc
Q 036642          708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ-SFNLSNN  786 (938)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~-~L~Ls~N  786 (938)
                                                                     +.++|++| ++..-+..|.++++|+ .+++++ 
T Consensus       253 -----------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          253 -----------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             -----------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             -----------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                                                           45666666 5533444567777777 777777 


Q ss_pred             cCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEe
Q 036642          787 FFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLN  830 (938)
Q Consensus       787 ~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  830 (938)
                      .++..-+.+|.++++|+.+++++|+++..-+..|.++++|+.++
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            66655567777777777777777777766666777777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3e-15  Score=145.52  Aligned_cols=136  Identities=18%  Similarity=0.222  Sum_probs=89.4

Q ss_pred             CcccEEeeCCCccc-ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhc
Q 036642          654 SRMVVLILRSNKFH-SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAML  732 (938)
Q Consensus       654 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  732 (938)
                      ++|+.|++++|+++ +.+|..+..+++|+.|++++|.+++.  ..+..+++                             
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-----------------------------   72 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK-----------------------------   72 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS-----------------------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC-----------------------------
Confidence            45566666666665 45555566666666666666666543  33333333                             


Q ss_pred             ccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccC-CccccccCCCCEEECCCCc
Q 036642          733 LEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI-PESIGAMRSLESIDFSLNQ  811 (938)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~~l~~L~~LdLs~N~  811 (938)
                                           |+.|++++|++++.+|..++.+++|+.|+|++|.+++.. +..++.+++|+.|++++|+
T Consensus        73 ---------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           73 ---------------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             ---------------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             ---------------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence                                 256777777777667776777777777777777777532 2667777788888888888


Q ss_pred             ccccCC---ccccCCCCCCeEeCcCCcccccCCC
Q 036642          812 LSGEIP---QSMSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       812 l~~~ip---~~l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                      +++..+   ..+..+++|++|++++|.+. ++|.
T Consensus       132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          132 VTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             GGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            776544   46777788888888887776 3443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=7.4e-15  Score=142.75  Aligned_cols=138  Identities=20%  Similarity=0.185  Sum_probs=108.2

Q ss_pred             CcCCcEEECCCCccC-CCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhh
Q 036642          628 CTALLTLDVGENEFV-ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT  706 (938)
Q Consensus       628 l~~L~~L~Ls~N~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  706 (938)
                      .++|++|++++|.+. +.+|..+. .+++|++|++++|++++.  ..+..+++|+.|++++|.+++.+|..+..+++|  
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred             cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence            356677777777766 55666544 678888888888887775  677888999999999999987777766666555  


Q ss_pred             ccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc-CchhccCccCCCEEeCcC
Q 036642          707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK-IPLEVTNLKALQSFNLSN  785 (938)
Q Consensus       707 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~  785 (938)
                                                                      +.|++++|++++. .+..++.+++|+.|++++
T Consensus        98 ------------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           98 ------------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             ------------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             ------------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence                                                            7889999999853 227889999999999999


Q ss_pred             ccCcccCC---ccccccCCCCEEECCCCcccccCCcc
Q 036642          786 NFFTGRIP---ESIGAMRSLESIDFSLNQLSGEIPQS  819 (938)
Q Consensus       786 N~l~~~ip---~~~~~l~~L~~LdLs~N~l~~~ip~~  819 (938)
                      |.+++..+   ..+..+++|+.||+++|.+. .+|.+
T Consensus       130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             SGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             CcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            99996655   48899999999999999987 45554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=3.4e-15  Score=141.92  Aligned_cols=129  Identities=18%  Similarity=0.205  Sum_probs=87.7

Q ss_pred             cCcccEEeeCCCccc-ccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhh
Q 036642          653 FSRMVVLILRSNKFH-SLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAM  731 (938)
Q Consensus       653 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  731 (938)
                      .++|+.|++++|+++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|                           
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------   66 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL---------------------------   66 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence            355666666666666 55666666677777777777776643  333333333                           


Q ss_pred             cccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCccc-CCccccccCCCCEEECCCC
Q 036642          732 LLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGR-IPESIGAMRSLESIDFSLN  810 (938)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~LdLs~N  810 (938)
                                             +.|++++|++++.+|..++.+++|+.|++++|.+++. .|..++.+++|++|++++|
T Consensus        67 -----------------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           67 -----------------------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             -----------------------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             -----------------------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence                                   6677777777766777777777788888888877753 3467777788888888888


Q ss_pred             cccccCC---ccccCCCCCCeEeCcC
Q 036642          811 QLSGEIP---QSMSSLTYLNHLNLSN  833 (938)
Q Consensus       811 ~l~~~ip---~~l~~l~~L~~L~ls~  833 (938)
                      ++++..+   ..+..+++|++|++++
T Consensus       124 ~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          124 EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cccchHHHHHHHHHHCCCcccccCCC
Confidence            8776555   4677777788877763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.6e-14  Score=141.68  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=75.3

Q ss_pred             eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642          755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN  834 (938)
Q Consensus       755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  834 (938)
                      +.|++++|++++..+..++.+++|+.|++++|++++..|..++.+++|++||+++|++++..+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            67788888888655566788999999999999999877778899999999999999999766666788999999999999


Q ss_pred             cccccCCC
Q 036642          835 NLTGKIPS  842 (938)
Q Consensus       835 ~l~g~ip~  842 (938)
                      +++|.+|.
T Consensus       135 ~~~~~~~~  142 (177)
T 2o6r_A          135 PWDCSCPR  142 (177)
T ss_dssp             CBCCCHHH
T ss_pred             CeeccCcc
Confidence            99998874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=9e-15  Score=138.96  Aligned_cols=129  Identities=17%  Similarity=0.156  Sum_probs=99.3

Q ss_pred             CcCCcEEECCCCccC-CCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhh
Q 036642          628 CTALLTLDVGENEFV-ENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVT  706 (938)
Q Consensus       628 l~~L~~L~Ls~N~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  706 (938)
                      .++|+.|++++|.+. +.+|..+. .+++|++|++++|++++.  ..+..+++|+.|++++|.+++.+|..+..+++|  
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L--   90 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL--   90 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC--
T ss_pred             CccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC--
Confidence            355666666666665 55665444 577777777777777765  667788889999999999887777766665555  


Q ss_pred             ccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc-CchhccCccCCCEEeCcC
Q 036642          707 LNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK-IPLEVTNLKALQSFNLSN  785 (938)
Q Consensus       707 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~  785 (938)
                                                                      +.|++++|++++. .|..++.+++|+.|++++
T Consensus        91 ------------------------------------------------~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           91 ------------------------------------------------THLNLSGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             ------------------------------------------------CEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             ------------------------------------------------CEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence                                                            7888999999863 458899999999999999


Q ss_pred             ccCcccCC---ccccccCCCCEEECCC
Q 036642          786 NFFTGRIP---ESIGAMRSLESIDFSL  809 (938)
Q Consensus       786 N~l~~~ip---~~~~~l~~L~~LdLs~  809 (938)
                      |.+++..+   ..++.+++|+.||+++
T Consensus       123 N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          123 CEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcccchHHHHHHHHHHCCCcccccCCC
Confidence            99997666   5789999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=137.48  Aligned_cols=109  Identities=28%  Similarity=0.301  Sum_probs=56.8

Q ss_pred             CCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEE
Q 036642          143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR  222 (938)
Q Consensus       143 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  222 (938)
                      +|++|++++|+++ .+|..|.++++|++|+|++|.+....+..|.++++|++|++++|.++.++.  ..+..+++|++|+
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~--~~f~~l~~L~~L~  108 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP--RTFDGLKSLRLLS  108 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH--HHhCCCCCCCEEE
Confidence            4444444444444 333444444444444444444444444444444444444444444443321  3445556666666


Q ss_pred             cCCCCCCCCCcccccCCCCCCEEECCCCCCCC
Q 036642          223 LSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN  254 (938)
Q Consensus       223 L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  254 (938)
                      |++|.++.+++..|..+++|+.|++++|.+..
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            66666666666667777777777777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=1.2e-15  Score=152.85  Aligned_cols=153  Identities=18%  Similarity=0.257  Sum_probs=110.0

Q ss_pred             cCcCCcEEECCCCccCCCCCh------hHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhc
Q 036642          627 NCTALLTLDVGENEFVENIPT------WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHN  700 (938)
Q Consensus       627 ~l~~L~~L~Ls~N~l~~~~p~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  700 (938)
                      ....++.++++.+.+.+.+|.      .+. .+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            334445555555555555443      555 67888888888888877 55 7777888888888888887 56655554


Q ss_pred             chhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCE
Q 036642          701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQS  780 (938)
Q Consensus       701 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~  780 (938)
                      +++|                                                  +.|++++|++++ +| .++.+++|+.
T Consensus        92 ~~~L--------------------------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~  119 (198)
T 1ds9_A           92 ADTL--------------------------------------------------EELWISYNQIAS-LS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHC--------------------------------------------------SEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred             CCcC--------------------------------------------------CEEECcCCcCCc-CC-ccccCCCCCE
Confidence            4444                                                  678888888885 55 6888888888


Q ss_pred             EeCcCccCcccCC-ccccccCCCCEEECCCCcccccCCcc----------ccCCCCCCeEeCcCCccc
Q 036642          781 FNLSNNFFTGRIP-ESIGAMRSLESIDFSLNQLSGEIPQS----------MSSLTYLNHLNLSNNNLT  837 (938)
Q Consensus       781 L~Ls~N~l~~~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~  837 (938)
                      |++++|++++..+ +.++.+++|++|++++|++++.+|..          +..+++|++||  +|+++
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888888885332 46788888888888888888877664          77788888887  56555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=4e-13  Score=131.67  Aligned_cols=130  Identities=21%  Similarity=0.178  Sum_probs=76.6

Q ss_pred             CCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCC
Q 036642          119 LSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLS  198 (938)
Q Consensus       119 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  198 (938)
                      .+.++++++.++  .+|..+  .++|++|++++|++++..+..|+++++|++|++++|.+.......|.++++|++|+++
T Consensus         9 ~~~l~~~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS--SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc--cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            356666666666  345433  3567777777777776655666777777777777776665555555555555555555


Q ss_pred             CCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCC
Q 036642          199 YVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN  254 (938)
Q Consensus       199 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  254 (938)
                      +|.++.++.  ..+..+++|++|++++|+++++++..+..+++|++|++++|.+.+
T Consensus        85 ~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQSLPN--GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccccCH--HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            555554432  234455555555555555555555555555555555555555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=3.4e-12  Score=141.70  Aligned_cols=100  Identities=16%  Similarity=0.041  Sum_probs=51.6

Q ss_pred             CCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEE
Q 036642          143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLR  222 (938)
Q Consensus       143 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~  222 (938)
                      +|+.+++..+ ++.....+|.++ +|+.+++.. .+..+...+|.++++|+.++++.|.++.++.  ..|. ..+|+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~--~aF~-~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA--STFV-YAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT--TTTT-TCCCSEEE
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech--hhEe-ecccCEEE
Confidence            4666665544 443444455553 466666553 4555555555555555555555555554433  2222 34555555


Q ss_pred             cCCCCCCCCCcccccCCCCCCEEECCC
Q 036642          223 LSRCQLHHLPPLAIANFSTLTTLDLLY  249 (938)
Q Consensus       223 L~~n~i~~~~~~~l~~l~~L~~L~L~~  249 (938)
                      +.. .++.+...+|.++++|+.+++..
T Consensus       210 lp~-~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          210 LPV-TLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred             eCC-chheehhhHhhCCCCCCEEecCC
Confidence            542 25555555555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=2.6e-13  Score=131.68  Aligned_cols=90  Identities=20%  Similarity=0.214  Sum_probs=82.2

Q ss_pred             eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642          754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN  833 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  833 (938)
                      ++.|+|++|++++..|..++++++|+.|+|++|+|++..|..|+.+++|++|+|++|+|++..|..+..+++|++|++++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            37899999999988899999999999999999999988788889999999999999999987777899999999999999


Q ss_pred             CcccccCCCC
Q 036642          834 NNLTGKIPSS  843 (938)
Q Consensus       834 N~l~g~ip~~  843 (938)
                      |+++|.++..
T Consensus       112 N~~~c~c~~l  121 (170)
T 3g39_A          112 NPWDCACSDI  121 (170)
T ss_dssp             SCBCTTBGGG
T ss_pred             CCCCCCchhH
Confidence            9999987743

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=1.3e-13  Score=134.88  Aligned_cols=134  Identities=17%  Similarity=0.098  Sum_probs=84.5

Q ss_pred             CccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCC
Q 036642          112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF  191 (938)
Q Consensus       112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~  191 (938)
                      .+.+.++|++|++++|.++.  +|......++|++|++++|.+++.  ..++++++|++|++++|.+....+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            45677788999999998884  555433344889999999888864  67888888888888888887665555566666


Q ss_pred             CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcc---cccCCCCCCEEECCCC
Q 036642          192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL---AIANFSTLTTLDLLYN  250 (938)
Q Consensus       192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---~l~~l~~L~~L~L~~n  250 (938)
                      |++|++++|.++.++.+ ..+..+++|++|++++|.++.++..   .+..+++|++||+++|
T Consensus        90 L~~L~L~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           90 LTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCEEECCCCcCCcchhh-HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            77777666666554321 1344455555555555555443322   2333444444444433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=3.1e-12  Score=142.03  Aligned_cols=224  Identities=11%  Similarity=0.067  Sum_probs=170.8

Q ss_pred             CccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCC
Q 036642          112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF  191 (938)
Q Consensus       112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~  191 (938)
                      .|.+ .+|+.+++..+ ++.+ -...|.++ +|+.+.+.. .+....+.+|.++++|+.+++++|++..+...+|. ..+
T Consensus       131 aF~~-~~L~~i~l~~~-i~~I-~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~  204 (401)
T 4fdw_A          131 AFRN-SQIAKVVLNEG-LKSI-GDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG  204 (401)
T ss_dssp             TTTT-CCCSEEECCTT-CCEE-CTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred             hccc-CCccEEEeCCC-ccEE-CHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence            4555 47999999876 6643 23356664 799999986 66767778999999999999999999999999998 589


Q ss_pred             CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642          192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD  271 (938)
Q Consensus       192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  271 (938)
                      |+.+.+..+ ++.++.  .+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+.. .++.. ....|.++++|+.++
T Consensus       205 L~~l~lp~~-l~~I~~--~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I-~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          205 IEEVLLPVT-LKEIGS--QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNI-ASRAFYYCPELAEVT  277 (401)
T ss_dssp             CSEEECCTT-CCEECT--TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEE-CTTTTTTCTTCCEEE
T ss_pred             cCEEEeCCc-hheehh--hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEE-ChhHhhCCCCCCEEE
Confidence            999999854 666654  68899999999999874 78888888888 7899999944 44432 266788888999999


Q ss_pred             ccCCccc-----CCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC
Q 036642          272 LRRNNFQ-----GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC  346 (938)
Q Consensus       272 L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  346 (938)
                      +.++.+.     ...+.+|.+|++|+.+.+. +.++......|.++++|+.+.+..+ ++.....+|.++ +|+.+++.+
T Consensus       278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             EESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred             eCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence            8887664     3455677888888888887 4466566667778888888888554 555556677777 777777777


Q ss_pred             CcCcc
Q 036642          347 VKLSQ  351 (938)
Q Consensus       347 n~l~~  351 (938)
                      |....
T Consensus       355 n~~~~  359 (401)
T 4fdw_A          355 TTPPQ  359 (401)
T ss_dssp             SSCCB
T ss_pred             CCCcc
Confidence            65543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=2.8e-13  Score=132.59  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCc--cccccCCCCEEECCCCcccccCCcc----ccCCCCCCe
Q 036642          755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPE--SIGAMRSLESIDFSLNQLSGEIPQS----MSSLTYLNH  828 (938)
Q Consensus       755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L~~  828 (938)
                      +.|++++|++++..|..++.+++|+.|+|++|.++ .+|.  .++.+++|+.|++++|+++ .+|..    +..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            34444444444222222244555555555555553 3443  4555555555555555555 33442    555556666


Q ss_pred             EeCcCCccc
Q 036642          829 LNLSNNNLT  837 (938)
Q Consensus       829 L~ls~N~l~  837 (938)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            666655544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=1.2e-14  Score=145.41  Aligned_cols=150  Identities=21%  Similarity=0.189  Sum_probs=120.6

Q ss_pred             hccCCCcceeeccCccCCCccch------hhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccccccc
Q 036642          554 AHELKKLQFLYLRGNFLQGELTD------CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKN  627 (938)
Q Consensus       554 l~~l~~L~~L~ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~  627 (938)
                      +.....++.++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++..+..+..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~   91 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV   91 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence            34566788888888888877776      88889999999999999986 66 888899999999999998854336777


Q ss_pred             CcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCC-ccccCCCccCeeeccccccccccchh---------
Q 036642          628 CTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLP-KGLCDLAFLQIVDLADNNLSGEVPRC---------  697 (938)
Q Consensus       628 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~---------  697 (938)
                      +++|++|++++|++.+ +| .+. .+++|++|++++|++++..+ ..+..+++|+.|++++|++++.+|..         
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  168 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE  168 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence            8899999999999876 55 454 68899999999999887433 57888999999999999998877653         


Q ss_pred             -hhcchhhhhcc
Q 036642          698 -IHNLRAMVTLN  708 (938)
Q Consensus       698 -l~~l~~L~~l~  708 (938)
                       +..+++|+.++
T Consensus       169 ~~~~l~~L~~Ld  180 (198)
T 1ds9_A          169 VVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHCSSCSEEC
T ss_pred             HHHhCCCcEEEC
Confidence             66777776665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=8.8e-13  Score=128.36  Aligned_cols=89  Identities=19%  Similarity=0.207  Sum_probs=79.4

Q ss_pred             eeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642          754 VRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN  833 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  833 (938)
                      ++.|+|++|++++..|..++++++|+.|+|++|+|++..+..|+++++|+.|||++|+|++..|..+..+++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            37889999999988888999999999999999999977667789999999999999999977666799999999999999


Q ss_pred             CcccccCCC
Q 036642          834 NNLTGKIPS  842 (938)
Q Consensus       834 N~l~g~ip~  842 (938)
                      |++.+.++.
T Consensus       115 N~~~c~~~~  123 (174)
T 2r9u_A          115 NPWDCECRD  123 (174)
T ss_dssp             SCBCTTBGG
T ss_pred             CCccccccc
Confidence            999987663

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.34  E-value=2.3e-11  Score=135.74  Aligned_cols=198  Identities=11%  Similarity=0.036  Sum_probs=108.0

Q ss_pred             cccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCC
Q 036642          137 FICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLP  216 (938)
Q Consensus       137 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~  216 (938)
                      +|.++.+|+.+.+..+ ++.+-..+|.++++|+.+++..+ +..+...+|.++.+|+.+.+..+ +..+..  .+|.++.
T Consensus        66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~--~aF~~~~  140 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV--EAFKGCD  140 (394)
T ss_dssp             TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT--TTTTTCC
T ss_pred             HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc--eeeeccc
Confidence            4667777888887643 55455567778888888887654 66666677777777777666543 222221  3344443


Q ss_pred             CCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEEC
Q 036642          217 SLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLL  296 (938)
Q Consensus       217 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  296 (938)
                      .++....  ..+..+...+|.++++|+.+.+..+..  .+....+.++.+|+.+++..+ ++......+.++..|+.+.+
T Consensus       141 ~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          141 FKEITIP--EGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             CSEEECC--TTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             ccccccC--ccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence            3332222  223334455677777777777765432  122445566666766666554 33334455666666666665


Q ss_pred             cCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCC
Q 036642          297 DSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCV  347 (938)
Q Consensus       297 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  347 (938)
                      ..+...  +.........|+.+.+... +.......+..+..++.+.+..+
T Consensus       216 ~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          216 PNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred             CCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence            544322  2333334455666655433 22223334555555555555433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.32  E-value=5.9e-11  Score=132.37  Aligned_cols=219  Identities=12%  Similarity=0.099  Sum_probs=105.1

Q ss_pred             cccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCC-CCCCCccccceeecccccCCCCCCcccCCCCC
Q 036642          384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMN-DNWIPPFQLATLGLRHCHLGSRFPSWLHSQKH  462 (938)
Q Consensus       384 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~  462 (938)
                      ..|.++++|+.+.+.++. .......|.++++|+.+++..+ ++.++ ..+.....|+.+.+..+..  .+.........
T Consensus       156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~  231 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTG  231 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCC
T ss_pred             hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--EeehhhcccCC
Confidence            346666777777765543 2233445666677776666554 22222 2223333444444333221  11122223344


Q ss_pred             CcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCcc
Q 036642          463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSI  542 (938)
Q Consensus       463 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l  542 (938)
                      |+.+.+.... + .+....+..+..++.+.+..+...-....+..+..++.+.                     ...+.+
T Consensus       232 l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~---------------------~~~~~i  288 (394)
T 4fs7_A          232 VKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVI---------------------YGSVIV  288 (394)
T ss_dssp             CCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEE---------------------ECSSEE
T ss_pred             CceEEECCCc-e-ecccccccccccceeEEcCCCcceeeccccccccccceec---------------------cCceee
Confidence            5555443321 1 2222333344455555544443221111333333333333                     333222


Q ss_pred             ccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccc
Q 036642          543 SGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI  622 (938)
Q Consensus       543 ~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  622 (938)
                      ..       ..+..+.+|+.+.+.++ ++.....+|.++.+|+.+++.++ ++..-..+|.+|++|+.+++..+ ++..-
T Consensus       289 ~~-------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          289 PE-------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             CT-------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             cc-------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            11       12344566666666543 44344556666677777776543 55444566666777777776655 44333


Q ss_pred             c-ccccCcCCcEEECCCC
Q 036642          623 H-SLKNCTALLTLDVGEN  639 (938)
Q Consensus       623 ~-~l~~l~~L~~L~Ls~N  639 (938)
                      . +|.+|++|+.+++..+
T Consensus       359 ~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG
T ss_pred             HHHhhCCCCCCEEEECCC
Confidence            3 6677777777766544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.27  E-value=2.5e-11  Score=117.61  Aligned_cols=106  Identities=29%  Similarity=0.291  Sum_probs=65.5

Q ss_pred             CCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCC
Q 036642          119 LSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLS  198 (938)
Q Consensus       119 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  198 (938)
                      .+++++++|.++  .+|..+  .++|++|+|++|++++..|..|.++++|++|+|++|++....+..|.+          
T Consensus        11 ~~~l~~s~n~l~--~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~----------   76 (170)
T 3g39_A           11 GTTVDCSGKSLA--SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK----------   76 (170)
T ss_dssp             TTEEECTTSCCS--SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT----------
T ss_pred             CCEEEeCCCCcC--ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC----------
Confidence            356777777776  355544  366777777777777666777777777777777777665544433333          


Q ss_pred             CCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCC
Q 036642          199 YVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN  254 (938)
Q Consensus       199 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  254 (938)
                                      +++|++|+|++|+++++++..|.++++|++|+|++|.+..
T Consensus        77 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           77 ----------------LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             ----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ----------------CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence                            4444444444455555555556666666666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=3.4e-13  Score=148.24  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=32.8

Q ss_pred             eEEEeecCccCc----cCchhccCccCCCEEeCcCccCccc----CCccccccCCCCEEECCCCcccccC
Q 036642          755 RIIDFSKNNFSG----KIPLEVTNLKALQSFNLSNNFFTGR----IPESIGAMRSLESIDFSLNQLSGEI  816 (938)
Q Consensus       755 ~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~LdLs~N~l~~~i  816 (938)
                      +.|||++|++++    .++..+...+.|+.|+|++|.++..    ++..+...++|++|||++|+|+..-
T Consensus       186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            455555555543    1234445555666666666666532    2333344456666666666665443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=4.1e-11  Score=116.49  Aligned_cols=58  Identities=22%  Similarity=0.195  Sum_probs=29.0

Q ss_pred             CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCccccc
Q 036642          120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE  181 (938)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~  181 (938)
                      +.+++++|.++  .+|..+.  ++|++|+|++|++++..|..|+++++|++|+|++|++..+
T Consensus        15 ~~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i   72 (174)
T 2r9u_A           15 TLVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI   72 (174)
T ss_dssp             SEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cEEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc
Confidence            34555555554  2444332  4555555555555555555555555555555555544433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=3.7e-11  Score=131.73  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=55.8

Q ss_pred             eEEEeec-CccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642          755 RIIDFSK-NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN  833 (938)
Q Consensus       755 ~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  833 (938)
                      +.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |++|++++
T Consensus        34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~  112 (347)
T 2ifg_A           34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG  112 (347)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred             eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence            5566664 666655556666667777777777777766666666777777777777777655445555554 67777777


Q ss_pred             CcccccCC
Q 036642          834 NNLTGKIP  841 (938)
Q Consensus       834 N~l~g~ip  841 (938)
                      |++.+.++
T Consensus       113 N~~~c~c~  120 (347)
T 2ifg_A          113 NPLHCSCA  120 (347)
T ss_dssp             SCCCCCGG
T ss_pred             CCccCCCc
Confidence            77666544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=3.1e-12  Score=140.56  Aligned_cols=15  Identities=33%  Similarity=0.483  Sum_probs=8.3

Q ss_pred             CCCCEEeCCCCCCCC
Q 036642          190 SFLKDLDLSYVNLSK  204 (938)
Q Consensus       190 ~~L~~L~Ls~n~l~~  204 (938)
                      +.|+.|++++|.++.
T Consensus        72 ~~L~~L~Ls~n~l~~   86 (372)
T 3un9_A           72 SSLRQLNLAGVRMTP   86 (372)
T ss_dssp             TTCCEEECTTSCCCH
T ss_pred             hhCCEEEecCCCCCH
Confidence            445566666655543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.08  E-value=2.5e-10  Score=125.10  Aligned_cols=95  Identities=25%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             cccCCccCCCCCCEEeCCC-CCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642          108 KVNPSLLDLKHLSYLDLSY-NDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL  186 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  186 (938)
                      .+|. +..+++|++|+|++ |.++++ .+..|+++++|++|+|++|++++..|..|++|++|++|+|++|++....+..|
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  100 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV  100 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence            4788 88999999999996 999864 45678999999999999999999888899999999999999999988777777


Q ss_pred             CCCCCCCEEeCCCCCCCCC
Q 036642          187 PGLSFLKDLDLSYVNLSKA  205 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~  205 (938)
                      ..++ |+.|++.+|.+...
T Consensus       101 ~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A          101 QGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSCC-CCEEECCSSCCCCC
T ss_pred             ccCC-ceEEEeeCCCccCC
Confidence            7666 88888888877653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=1.3e-08  Score=113.34  Aligned_cols=103  Identities=12%  Similarity=0.024  Sum_probs=53.9

Q ss_pred             CCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCc---ccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc
Q 036642          143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF---LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV  219 (938)
Q Consensus       143 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~  219 (938)
                      .|+.+.+..+ ++.+-..+|.++++|+.+.+..|.   +..+...+|.++.+|+.+.+..+ ++.++.  ..|..+.+|+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~--~aF~~c~~L~  140 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS--EAFHHCEELD  140 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT--TTTTTCTTCC
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh--hhhhhhcccc
Confidence            3566655443 343445566666666666665542   44555556666666665554332 222221  3445555566


Q ss_pred             EEEcCCCCCCCCCcccccCCCCCCEEECCCC
Q 036642          220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYN  250 (938)
Q Consensus       220 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  250 (938)
                      .+.+.. .+..+....|.++..|+.+.+..+
T Consensus       141 ~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          141 TVTIPE-GVTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             EEECCT-TCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccc-eeeeecccceecccccccccccce
Confidence            655542 344444555666666666665443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.04  E-value=6.8e-09  Score=115.62  Aligned_cols=159  Identities=10%  Similarity=0.001  Sum_probs=91.3

Q ss_pred             CCCCCcCCCCCC-cccEEECCCCcccccCccccCCCCCCCEEeCCCCC---CCCCcchhhhhCCCCCCcEEEcCCCCCCC
Q 036642          155 VGMIPPQLGNLS-NLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVN---LSKASDWLRVTNTLPSLVKLRLSRCQLHH  230 (938)
Q Consensus       155 ~~~~p~~~~~L~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~~l~~L~~L~L~~n~i~~  230 (938)
                      +.+-..+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+.   ++.++.  .+|..+.+|+.+.+..+ ++.
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~--~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR--QAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT--TTTTTCTTCCBCGGGTT-CSE
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEech--hhchhcccceeeccCCc-cce
Confidence            334456788874 5999999754 777888889999999988887664   333333  45667777777666543 556


Q ss_pred             CCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhh
Q 036642          231 LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLY  310 (938)
Q Consensus       231 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  310 (938)
                      +....|.++.+|+.+.+..+..  .+....+..+..|+.+.+..+ ++.....+|. ...|+.+.+..+.. ......+.
T Consensus       128 I~~~aF~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~  202 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFS  202 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTT
T ss_pred             ehhhhhhhhcccccccccceee--eecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhh
Confidence            6666777777777777754321  111344555666666666543 2222222332 24555555543321 12233344


Q ss_pred             cCCCCCEEEccC
Q 036642          311 RFNRLESLGVSN  322 (938)
Q Consensus       311 ~l~~L~~L~L~~  322 (938)
                      .+..++......
T Consensus       203 ~c~~l~~~~~~~  214 (394)
T 4gt6_A          203 ECFALSTITSDS  214 (394)
T ss_dssp             TCTTCCEEEECC
T ss_pred             hccccceecccc
Confidence            444554444433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=4e-09  Score=114.61  Aligned_cols=80  Identities=15%  Similarity=0.304  Sum_probs=41.9

Q ss_pred             eeEEEeecCccCccCchhc---cCccCCCEEeCcCccCccc----CCccccccCCCCEEECCCCcccccCCccccC-CCC
Q 036642          754 VRIIDFSKNNFSGKIPLEV---TNLKALQSFNLSNNFFTGR----IPESIGAMRSLESIDFSLNQLSGEIPQSMSS-LTY  825 (938)
Q Consensus       754 l~~L~Ls~N~l~g~ip~~l---~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-l~~  825 (938)
                      |+.|+|++|.+.+..+..+   +.+++|+.|+|+.|.+++.    ++..+..+++|+.|||++|.++...-..+.. +  
T Consensus       254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--  331 (362)
T 2ra8_A          254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--  331 (362)
T ss_dssp             CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred             cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence            3445555554443222222   2356666667766666653    3444455677777777777666443222332 2  


Q ss_pred             CCeEeCcCCc
Q 036642          826 LNHLNLSNNN  835 (938)
Q Consensus       826 L~~L~ls~N~  835 (938)
                      ...+++++++
T Consensus       332 g~~~~~~~~~  341 (362)
T 2ra8_A          332 PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSBC
T ss_pred             CCEEEecCCc
Confidence            2446666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=9.2e-09  Score=111.77  Aligned_cols=186  Identities=13%  Similarity=0.151  Sum_probs=104.1

Q ss_pred             hccCCCcceeeccCccCC---------CccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-
Q 036642          554 AHELKKLQFLYLRGNFLQ---------GELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-  623 (938)
Q Consensus       554 l~~l~~L~~L~ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-  623 (938)
                      ...+++|+.|.+.+....         +.+...+..+++|+.|++++|.-. .++. + .+++|++|+|..|.+..... 
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            445667777777554321         124445566677777777766311 2222 3 26677777777766654322 


Q ss_pred             cc--ccCcCCcEEECCC--CccCCCCChhHhhhcCcccEEeeCCCcccccCCccc--cCCCccCeeeccccccccccchh
Q 036642          624 SL--KNCTALLTLDVGE--NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGL--CDLAFLQIVDLADNNLSGEVPRC  697 (938)
Q Consensus       624 ~l--~~l~~L~~L~Ls~--N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~N~l~~~~p~~  697 (938)
                      .+  ..+++|+.|+|+.  |...+...                   +.. +...+  ..+++|+.|++++|.+.+..+..
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~-------------------~~~-l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGD-------------------MNV-FRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSC-------------------GGG-TGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             HHHHccCCCCcEEEEeccccccccchh-------------------HHH-HHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            22  2456666666542  11111000                   000 00111  24677888888888776544433


Q ss_pred             hhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCcc----Cchhcc
Q 036642          698 IHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGK----IPLEVT  773 (938)
Q Consensus       698 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~----ip~~l~  773 (938)
                      +.....                                               ++.|+.|||+.|.+.+.    ++..+.
T Consensus       272 la~a~~-----------------------------------------------~~~L~~LdLs~n~L~d~G~~~L~~~L~  304 (362)
T 2ra8_A          272 FLESDI-----------------------------------------------LPQLETMDISAGVLTDEGARLLLDHVD  304 (362)
T ss_dssp             HHHCSS-----------------------------------------------GGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred             HHhCcc-----------------------------------------------CCCCCEEECCCCCCChHHHHHHHhhcc
Confidence            322111                                               23457888888888763    455556


Q ss_pred             CccCCCEEeCcCccCcccCCccccc-cCCCCEEECCCCc
Q 036642          774 NLKALQSFNLSNNFFTGRIPESIGA-MRSLESIDFSLNQ  811 (938)
Q Consensus       774 ~l~~L~~L~Ls~N~l~~~ip~~~~~-l~~L~~LdLs~N~  811 (938)
                      .+++|+.|+|++|.++...-..+.. +  ...+|++.++
T Consensus       305 ~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          305 KIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            7889999999999887544333443 2  4678998887

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.65  E-value=1.4e-06  Score=96.38  Aligned_cols=288  Identities=10%  Similarity=0.060  Sum_probs=137.7

Q ss_pred             ccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCC
Q 036642          113 LLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL  192 (938)
Q Consensus       113 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L  192 (938)
                      +..-.+|+.+.+.. .++.+ -..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +..+...+|... +|
T Consensus        42 ~~~~~~i~~v~ip~-~vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             cccccCCEEEEeCC-CccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            33445566666643 23321 1235667777777777644 444455667666 5666666533 555555666654 67


Q ss_pred             CEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCc-----------cCcccc
Q 036642          193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS-----------FVPNWV  261 (938)
Q Consensus       193 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------~~~~~~  261 (938)
                      +.+.+..+ +..+..  ..|.+. +++...+.. .++.+....|..+..++.+.+..+.....           .....+
T Consensus       116 ~~i~lp~~-~~~i~~--~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (379)
T 4h09_A          116 DDFEFPGA-TTEIGN--YIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY  190 (379)
T ss_dssp             SEEECCTT-CCEECT--TTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred             ccccCCCc-cccccc--cccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence            77777643 222211  233333 455555443 35555556677777777776655432210           001122


Q ss_pred             cCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCe
Q 036642          262 FGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRS  341 (938)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  341 (938)
                      .....+....+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......|.++.+|+.
T Consensus       191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            333444444443322 1123334455566666666443 22233444556666666666554 44444455556666666


Q ss_pred             eecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEc
Q 036642          342 VMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDL  421 (938)
Q Consensus       342 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  421 (938)
                      +.+..+ +......    .+..+. +|+.+.+.++.++......|.++.+|+.+++..+ ++.....+|.+|++|+.+.+
T Consensus       268 i~l~~~-i~~i~~~----aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          268 LNFYAK-VKTVPYL----LCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EEECCC-CSEECTT----TTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccc-ceecccc----cccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            655432 2111111    111122 4444444444444333444444444444444332 22222334444444444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.57  E-value=2.3e-06  Score=94.56  Aligned_cols=127  Identities=21%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             hhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCc
Q 036642          577 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSR  655 (938)
Q Consensus       577 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~  655 (938)
                      ++..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++..-. .+.++.+|+.+++..+  ...++...+.++++
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence            3444444555544333 22233344445555555555443 222222 4555555555555433  12233333334555


Q ss_pred             ccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhcc
Q 036642          656 MVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLN  708 (938)
Q Consensus       656 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  708 (938)
                      |+.+.+.++.++.+-...|.++++|+.++|..+ ++..-..+|.+|.+|+.+.
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            555555555555544555555566666655433 3322233555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=1.5e-07  Score=92.13  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=30.9

Q ss_pred             CCcEEEccCC-ccccccchhhhhhhccCCCcceeeccCccCCCc----cchhhhcCCCCCEEEcCCCccc
Q 036642          531 NLIELDFSNN-SISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFT  595 (938)
Q Consensus       531 ~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  595 (938)
                      +|++|++++| .+.......++..+...++|++|++++|.+...    +...+...++|++|+|++|.+.
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            4444555554 444433344444445555555555555555432    2223333445555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=1.4e-07  Score=96.96  Aligned_cols=78  Identities=18%  Similarity=0.237  Sum_probs=44.3

Q ss_pred             ccceeEEEeecCccCc--cCchhccCccCCCEEeCcCccCcccCCccccccC--CCCEEECCCCcccccCCc-------c
Q 036642          751 LNLVRIIDFSKNNFSG--KIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMR--SLESIDFSLNQLSGEIPQ-------S  819 (938)
Q Consensus       751 ~~~l~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~--~L~~LdLs~N~l~~~ip~-------~  819 (938)
                      ++.|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  +.+..++  +|++|+|++|++++.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3445666666666665  4445555666666666666666643  2344444  666666666666655542       2


Q ss_pred             ccCCCCCCeEe
Q 036642          820 MSSLTYLNHLN  830 (938)
Q Consensus       820 l~~l~~L~~L~  830 (938)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            44555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=2.5e-07  Score=95.02  Aligned_cols=84  Identities=26%  Similarity=0.338  Sum_probs=67.0

Q ss_pred             EEeecCccC---ccCchhccCccCCCEEeCcCccCcc--cCCccccccCCCCEEECCCCcccccCCccccCCC--CCCeE
Q 036642          757 IDFSKNNFS---GKIPLEVTNLKALQSFNLSNNFFTG--RIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLT--YLNHL  829 (938)
Q Consensus       757 L~Ls~N~l~---g~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L  829 (938)
                      ++++.|+..   +.++....+++.|+.|+|++|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            567777443   2223333578999999999999998  6678889999999999999999975  3455555  89999


Q ss_pred             eCcCCcccccCCC
Q 036642          830 NLSNNNLTGKIPS  842 (938)
Q Consensus       830 ~ls~N~l~g~ip~  842 (938)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999998874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.21  E-value=1.3e-06  Score=85.38  Aligned_cols=121  Identities=12%  Similarity=0.050  Sum_probs=70.8

Q ss_pred             CccccCCCCCCEEECcCC-cCCCc----cchhhhcCCCCCEEEccCCcCCchhh----HhhhccCCCCeeecCCCcCccc
Q 036642          282 PEGLQNLTSLKHLLLDSN-RFNSS----IPNWLYRFNRLESLGVSNNSLQGRVI----RSMASLCNLRSVMLSCVKLSQE  352 (938)
Q Consensus       282 p~~l~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~  352 (938)
                      ...+...++|++|+|++| .+...    +...+...++|++|+|++|.+.....    ..+...+.|++|+|++|.+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344566777888888887 66542    33344556777777777777765432    3344456677777777766654


Q ss_pred             hhhHHHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEc--cCCeeccc----ccccccCCCCCcEEEccCccC
Q 036642          353 ISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDL--SNNSIVGP----IPFSLGHLSTLQFIDLSYNEL  426 (938)
Q Consensus       353 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l  426 (938)
                      ....+.                         ..+...+.|++|+|  ++|.+...    +...+...++|++|+|++|.+
T Consensus       109 g~~~l~-------------------------~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GILALV-------------------------EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHH-------------------------HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHH-------------------------HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            333222                         22344455666666  55666533    223444556677777776665


Q ss_pred             C
Q 036642          427 N  427 (938)
Q Consensus       427 ~  427 (938)
                      .
T Consensus       164 ~  164 (185)
T 1io0_A          164 G  164 (185)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=1.4e-05  Score=75.87  Aligned_cols=85  Identities=11%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCc-CCCccchhhhcC----CCCCEEEccCCc-CCchhhHhhhccCC
Q 036642          265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNR-FNSSIPNWLYRF----NRLESLGVSNNS-LQGRVIRSMASLCN  338 (938)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~  338 (938)
                      .+|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+    ++|++|++++|. ++......+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467777777777665544556777788888888874 555444445553    368888888874 77777777888888


Q ss_pred             CCeeecCCCcC
Q 036642          339 LRSVMLSCVKL  349 (938)
Q Consensus       339 L~~L~L~~n~l  349 (938)
                      |+.|+++++.-
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            88888888753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.62  E-value=1.5e-05  Score=75.68  Aligned_cols=35  Identities=6%  Similarity=0.060  Sum_probs=21.3

Q ss_pred             CCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCC
Q 036642          142 GNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWN  176 (938)
Q Consensus       142 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n  176 (938)
                      .+|++||+++|.++..--..+.++++|++|+|++|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            45677777776665444444556666666666665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.25  E-value=0.0002  Score=69.22  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             CCCcEEEccCC-ccccccchhhhhhhccCCCcceeeccCccCCCc----cchhhhcCCCCCEEEcCCCccc
Q 036642          530 SNLIELDFSNN-SISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFT  595 (938)
Q Consensus       530 ~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  595 (938)
                      +.|++|++++| .|.......++..+..-+.|+.|+|++|++...    +.+.+..-+.|++|+|++|.|.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34555666553 555544455566666666677777777666532    2233344456666666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.94  E-value=0.0013  Score=59.38  Aligned_cols=40  Identities=18%  Similarity=0.183  Sum_probs=19.9

Q ss_pred             CCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccC
Q 036642          801 SLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKI  840 (938)
Q Consensus       801 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  840 (938)
                      +|+.|||++|+|+..-+..|..+++|++|+|++|++.+.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            3445555555555433444455555555555555555433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.68  E-value=0.0034  Score=60.67  Aligned_cols=42  Identities=17%  Similarity=0.255  Sum_probs=18.5

Q ss_pred             cCCCCCEEEccCCcCCchh----hHhhhccCCCCeeecCCCcCccc
Q 036642          311 RFNRLESLGVSNNSLQGRV----IRSMASLCNLRSVMLSCVKLSQE  352 (938)
Q Consensus       311 ~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~  352 (938)
                      .-+.|+.|+|++|.+....    .+.+..-+.|+.|+|+.|.+...
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            3344555555555444322    22233344455555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.65  E-value=0.0025  Score=57.50  Aligned_cols=58  Identities=16%  Similarity=0.293  Sum_probs=49.7

Q ss_pred             eEEEeecCccC-ccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccc
Q 036642          755 RIIDFSKNNFS-GKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG  814 (938)
Q Consensus       755 ~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~  814 (938)
                      ..+|.+++.++ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47899999997 46886554  469999999999997777889999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	938
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 93.7 bits (231), Expect = 2e-21
 Identities = 75/317 (23%), Positives = 117/317 (36%), Gaps = 41/317 (12%)

Query: 34  CLESERRALLRFKQDLQDPSNRLASWIGYEDCC--AWAGVVCDN--VTGHIVELNLRNPF 89
           C   +++ALL+ K+DL +P+  L+SW+   DCC   W GV+CD    T  +  L+L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59

Query: 90  TYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNL 149
              +L +    P          SL +L +L++L +   +     IP  I  +  L YL +
Sbjct: 60  --LNLPKPYPIP---------SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 150 SYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWL 209
           ++T   G IP  L  +  L  LD S+N L       +  L  L  +     N    +   
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPD 167

Query: 210 RVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVF 269
              +       + +SR +L    P   AN +             ++ V        Q + 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 270 L---------------------DLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNW 308
           L                     DLR N   G +P+GL  L  L  L +  N     IP  
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 309 LYRFNRLESLGVSNNSL 325
                R +    +NN  
Sbjct: 288 G-NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 1e-16
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 8/271 (2%)

Query: 603 GSLISLQSLHLRKNNLSGTIH---SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVL 659
                + +L L   NL        SL N   L  L +G    +         + +++  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 660 ILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQF 719
            +        +P  L  +  L  +D + N LSG +P  I +L  +V +        +   
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN---RISG 163

Query: 720 LLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQ 779
            +  S    + +     +   +          NL         N        +       
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 780 SFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGK 839
                           +G  ++L  +D   N++ G +PQ ++ L +L+ LN+S NNL G+
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 840 IPSSTQLQSFDASSYAGND-LCGAPLPRNCS 869
           IP    LQ FD S+YA N  LCG+PLP  C+
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 61/259 (23%), Positives = 99/259 (38%), Gaps = 6/259 (2%)

Query: 387 GQFKNLYYLDLSNNSIVG--PIPFSLGHLSTLQFIDLS--YNELNGMNDNWIPPFQLATL 442
            Q   +  LDLS  ++    PIP SL +L  L F+ +    N +  +        QL  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 443 GLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI 502
            + H ++    P +L   K L  LD SY+ ++G++P    S    +  +    N+I G I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAI 165

Query: 503 PNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQF 562
           P+ +  +  ++ +  + S +     I      L+ +   +S ++            K   
Sbjct: 166 PD-SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 563 LYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI 622
                              +NL  LDL NN+  G LP  L  L  L SL++  NNL G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 623 HSLKNCTALLTLDVGENEF 641
               N           N+ 
Sbjct: 285 PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.8 bits (182), Expect = 5e-15
 Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 9/268 (3%)

Query: 263 GLIQLVFLDLRRNNFQG--PIPEGLQNLTSLKHLLLDSN-RFNSSIPNWLYRFNRLESLG 319
              ++  LDL   N     PIP  L NL  L  L +         IP  + +  +L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 320 VSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVS 379
           +++ ++ G +   ++ +  L ++  S   LS  +          V          G+ +S
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI-----TFDGNRIS 162

Query: 380 GHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQL 439
           G +    G F  L+     + + +            L F+DLS N L G         + 
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 440 ATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIH 499
                   +  +     +   K+LN LDL  + I G++P    +    ++ L++SFN + 
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLC 281

Query: 500 GQIPNLTNAAQLEVLSLGSNSFSGALPL 527
           G+IP   N  + +V +  +N      PL
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 51/243 (20%), Positives = 85/243 (34%), Gaps = 49/243 (20%)

Query: 504 NLTNAAQLEVLSLGSNSFSGALPLISS--NLIELDFSNNSISGSIFHFICYRAHELKKLQ 561
             T   ++  L L   +     P+ SS  NL  L+F       ++   I     +L +L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 562 FLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGT 621
           +LY+    + G + D     + L+ LD S N  +G LP S+ SL +L  +    N +SG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 622 IHSLKNCTALLTLDVGENE----------------------------------------- 640
           I       + L   +  +                                          
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 641 ------FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV 694
                                +  L LR+N+ +  LP+GL  L FL  ++++ NNL GE+
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 695 PRC 697
           P+ 
Sbjct: 285 PQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 56/292 (19%), Positives = 99/292 (33%), Gaps = 30/292 (10%)

Query: 311 RFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIF-SGCVSSGLE 369
           +  R+ +L +S  +L        +SL NL    L+ + +    + +  I  +    + L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIP-SSLANLPY--LNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 370 ILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGM 429
            L +  ++VSG +   L Q K L  LD S N++ G +P S+  L  L  I    N ++G 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 430 NDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIY 489
             +    F      +                            +     ++ + S     
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHF 549
            + L+ N +   +  +  +  L  L L +N   G LP               ++      
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-------------QGLTQ----- 266

Query: 550 ICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPIS 601
                  LK L  L +  N L GE+     N Q   +   +NNK     P+ 
Sbjct: 267 -------LKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLP 310

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 1e-16
 Identities = 66/396 (16%), Positives = 124/396 (31%), Gaps = 60/396 (15%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
            S  DL  ++ L       + +     +  + NL  +N S  Q   + P  L NL+ L  
Sbjct: 38  VSQTDLDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVT----------NTLPSLVK 220
           + ++ N +                L  + +        L             + + +L  
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGP 280
           L   +          +   + LTTL+ L    +     + +  L  L  L    N     
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212

Query: 281 IPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR 340
            P     LT+L  L L+ N+        L     L  L ++NN +    +  ++ L  L 
Sbjct: 213 TPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLT 266

Query: 341 SVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNN 400
            + L   ++S             +                     +   KNL YL L  N
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQ---------LEDISPISNLKNLTYLTLYFN 317

Query: 401 SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQ 460
           +I    P     L+ LQ +  + N+++                           S L + 
Sbjct: 318 NISDISPV--SSLTKLQRLFFANNKVSD-------------------------VSSLANL 350

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFN 496
            ++N+L   ++ I+   P    ++ ++I  L L+  
Sbjct: 351 TNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 1e-16
 Identities = 66/376 (17%), Positives = 127/376 (33%), Gaps = 35/376 (9%)

Query: 264 LIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNN 323
           L Q+  L   R   +    +G++ L +L  +   +N+     P  L    +L  + ++NN
Sbjct: 43  LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 98

Query: 324 SLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLT 383
            +      +  +     ++  + +     +  + ++                       +
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE-----------------LSS 141

Query: 384 YKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLG 443
             +     L  L        G     L  L+ L  ++      N ++D  +         
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 444 LRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIP 503
           L   +      + L    +L+ L L+ + +   I  +  +S + +  LDL+ NQI    P
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTL--ASLTNLTDLDLANNQISNLAP 258

Query: 504 NLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563
            L+   +L  L LG+N  S   PL     +     N +               LK L +L
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-----QLEDISPISNLKNLTYL 312

Query: 564 YLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH 623
            L  N +         +   L  L  +NNK +     SL +L ++  L    N +S    
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT- 367

Query: 624 SLKNCTALLTLDVGEN 639
            L N T +  L + + 
Sbjct: 368 PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 3e-15
 Identities = 69/401 (17%), Positives = 130/401 (32%), Gaps = 61/401 (15%)

Query: 141 MGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYV 200
           +  +  L         +    +  L+NL  ++ S N L   ++  L  L+ L D+ ++  
Sbjct: 43  LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNN 98

Query: 201 NLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNW 260
            ++  +    +TN     +                              N        N 
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNL---------------TNLNRLELSSNT 143

Query: 261 VFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGV 320
           +  +  L  L   +    G     L+ L +L  L       N      +           
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK-------- 195

Query: 321 SNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG 380
                                 + +   L    ++I DI    + + L+ L L G+ +  
Sbjct: 196 ----------------------LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 233

Query: 381 HLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLA 440
             T  L    NL  LDL+NN I    P S   L+ L  + L  N+++ ++          
Sbjct: 234 IGT--LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 441 TLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHG 500
                +        S L    +L YL L ++ I+   P    SS +++  L  + N++  
Sbjct: 290 LELNENQLEDISPISNLK---NLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD 343

Query: 501 QIPNLTNAAQLEVLSLGSNSFSGALPLIS-SNLIELDFSNN 540
            + +L N   +  LS G N  S   PL + + + +L  ++ 
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.9 bits (180), Expect = 2e-14
 Identities = 60/331 (18%), Positives = 97/331 (29%), Gaps = 61/331 (18%)

Query: 386 LGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLR 445
           +    NL  ++ SNN +    P    +L+ L  I ++ N++  +                
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 446 HCHLGSRFPSWLHSQKH-------------------------------------LNYLDL 468
           +          L +                                        L  L+ 
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 469 SYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLI 528
                         +  + +  L  + NQI    P       L+ LSL  N       L 
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGTLA 238

Query: 529 S-SNLIELDFSNNSISGSIFHFICYRAHELK----KLQFLYLRGNFLQGELTDCWMNY-- 581
           S +NL +LD +NN IS         +  ELK    ++  +            +   N   
Sbjct: 239 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298

Query: 582 --------QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLT 633
                   +NL  L L  N  +      + SL  LQ L    N +S  + SL N T +  
Sbjct: 299 DISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD-VSSLANLTNINW 355

Query: 634 LDVGENEFVENIPTWIGERFSRMVVLILRSN 664
           L  G N+  +  P       +R+  L L   
Sbjct: 356 LSAGHNQISDLTPL---ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 66/403 (16%), Positives = 123/403 (30%), Gaps = 58/403 (14%)

Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGAL 525
             L  + +T ++     +   Q+  L      I   I  +     L  ++  +N  +   
Sbjct: 27  TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDIT 82

Query: 526 PLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNL 584
           PL + + L+++  +NN I+             L          + L+       +   + 
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 585 MILDLSNNKFTGNLPISLGSLISLQSLHL----------RKNNLSGTIHSLKNCTALLTL 634
            I D+S      +L              L            +N    I  L   T L +L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEV 694
               N+  +  P  I    + +  L L  N+        L  L  L  +DLA+N +S   
Sbjct: 203 IATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 695 PRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLV 754
           P  +  L  +  L       +    +   S       L    L   +         L  +
Sbjct: 258 P--LSGLTKLTELK------LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG 814
             +    NN S   P+   +L  LQ    +NN  +                         
Sbjct: 310 TYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD------------------------ 343

Query: 815 EIPQSMSSLTYLNHLNLSNNNLTGKIPSS--TQLQSFDASSYA 855
               S+++LT +N L+  +N ++   P +  T++     +  A
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 84  NLRNPFTYCDLSQSKANPRSMLVGKVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGN 143
            + N      L+       +    +    + +LK+L+YL L +N+   +     + S+  
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTK 330

Query: 144 LRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY 199
           L+ L  +  +        L NL+N+ +L    N +   +L  L  L+ +  L L+ 
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI--SDLTPLANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 1e-16
 Identities = 44/258 (17%), Positives = 82/258 (31%), Gaps = 14/258 (5%)

Query: 390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPF-QLATLGLRHCH 448
            +   LDL NN I         +L  L  + L  N+++ ++     P  +L  L L    
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
           L         + + L   +   + +  S+ N   +    + +          +       
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 509 AQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN 568
            +L  + +   + +     +  +L EL    N I+      +      L  L  L L  N
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK----GLNNLAKLGLSFN 205

Query: 569 FLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG-------T 621
            +         N  +L  L L+NNK     P  L     +Q ++L  NN+S         
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 622 IHSLKNCTALLTLDVGEN 639
                   +   + +  N
Sbjct: 265 PGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (189), Expect = 7e-16
 Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 21/267 (7%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
           +   L+L   +   +      NL NL  L L  N +   +      L  L+ L LS   L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNS-FVPNWV 261
            +  + +  T       +LR+   ++  +        + +  ++L  N   +S       
Sbjct: 92  KELPEKMPKTLQ-----ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 262 FGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVS 321
            G+ +L ++ +   N    IP+GL    SL  L LD N+        L   N L  LG+S
Sbjct: 147 QGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 322 NNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSG- 380
            NS+      S+A+  +LR + L+  KL +    + D         ++++ L  +++S  
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY------IQVVYLHNNNISAI 257

Query: 381 -----HLTYKLGQFKNLYYLDLSNNSI 402
                       +  +   + L +N +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 4e-15
 Identities = 44/276 (15%), Positives = 77/276 (27%), Gaps = 10/276 (3%)

Query: 225 RCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG 284
           +C    L  +          LDL  N+            L  L  L L  N      P  
Sbjct: 16  QCSDLGLEKVPKDLPPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 285 LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML 344
              L  L+ L L  N+              L         ++  V   +  +  +     
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 345 SCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG 404
                  E              G++ L     + +   T   G   +L  L L  N I  
Sbjct: 135 PLKSSGIENGAF---------QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 185

Query: 405 PIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLN 464
               SL  L+ L  + LS+N ++ +++  +           + +   + P  L   K++ 
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245

Query: 465 YLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHG 500
            + L  + I+    N F            S   +  
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 48/282 (17%), Positives = 91/282 (32%), Gaps = 19/282 (6%)

Query: 560 LQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
              L L+ N +       + N +NL  L L NNK +   P +   L+ L+ L+L KN L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 620 GTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSL--LPKGLCDL 677
                +      L +       +  +   +    ++M+V+ L +N   S          +
Sbjct: 93  ELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 678 AFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDAL 737
             L  + +AD N++        +L  +    +   K           +  +    L  + 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-----KGLNNLAKLGLSF 204

Query: 738 VVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTG------R 791
             +             +R +  + N    K+P  + + K +Q   L NN  +        
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 792 IPESIGAMRSLESIDFSLNQLS-GEIPQSM-SSLTYLNHLNL 831
            P       S   +    N +   EI  S    +     + L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 39/287 (13%), Positives = 81/287 (28%), Gaps = 19/287 (6%)

Query: 528 ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMIL 587
           +  +   LD  NN I+             LK L  L L  N +       +     L  L
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDF----KNLKNLHTLILINNKISKISPGAFAPLVKLERL 84

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPT 647
            LS N+          +L  L+        +  ++ +  N   ++ L     +       
Sbjct: 85  YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 648 WIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTL 707
                  ++  + +      + +P+GL     L  + L  N ++      +  L  +  L
Sbjct: 145 AFQ-GMKKLSYIRIADTNITT-IPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 708 NSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSG- 766
                          A+      + L +  +V           +   +++    NN S  
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI---QVVYLHNNNISAI 257

Query: 767 -----KIPLEVTNLKALQSFNLSNNFFTGR--IPESIGAMRSLESID 806
                  P   T   +    +L +N        P +   +    ++ 
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 6e-09
 Identities = 45/286 (15%), Positives = 93/286 (32%), Gaps = 35/286 (12%)

Query: 582 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLDVGENE 640
            +  +LDL NNK T        +L +L +L L  N +S     +      L  L + +N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 641 FVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHN 700
             + +P  + +    + V      K    +  GL  +  +++        SG        
Sbjct: 91  L-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQG 148

Query: 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS 760
           ++                              L    +         + +   +  +   
Sbjct: 149 MKK-----------------------------LSYIRIADTNITTIPQGLPPSLTELHLD 179

Query: 761 KNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSM 820
            N  +      +  L  L    LS N  +     S+     L  +  + N+L  ++P  +
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 238

Query: 821 SSLTYLNHLNLSNNNLTGKIPSSTQLQSFDA--SSYAGNDLCGAPL 864
           +   Y+  + L NNN++    +      ++   +SY+G  L   P+
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 58/286 (20%), Positives = 90/286 (31%), Gaps = 35/286 (12%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
             + + L   +   +         NL  L L  N L   +     GL+ L+ LDLS    
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 203 SKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVF 262
            ++       + L  L  L L RC L  L P      + L  L L  N    +   +   
Sbjct: 93  LRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFR 150

Query: 263 GLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSN 322
            L  L  L L  N          + L SL  LLL  NR     P+      RL +L +  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 323 NSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHL 382
           N+L      ++A L  L+ + L+      +                              
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA--------------------------- 243

Query: 383 TYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNG 428
                 +  L     S++ +   +P     L+      L+ N+L G
Sbjct: 244 ---RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 3e-10
 Identities = 45/278 (16%), Positives = 82/278 (29%), Gaps = 16/278 (5%)

Query: 298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIF 357
             +   ++P  +      + + +  N +      S  +  NL  + L    L++  +  F
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 358 DIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQ 417
              +      L       S               L+ L L    +    P     L+ LQ
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATF----HGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 418 FIDLSYNELNGMNDNWIP-PFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGS 476
           ++ L  N L  + D+       L  L L    + S           L+ L L  + +   
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 477 IPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLIS--SNLIE 534
            P+ F      + +   + N        L     L+ L L  N +          + L +
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

Query: 535 LDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQG 572
              S++ +  S+          L       L  N LQG
Sbjct: 253 FRGSSSEVPCSL-------PQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 3e-10
 Identities = 39/265 (14%), Positives = 80/265 (30%), Gaps = 8/265 (3%)

Query: 281 IPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLR 340
           +P G+    + + + L  NR +         F    +L +             A+   L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAAS---FRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 341 SVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNN 400
            +    +  + ++  +       +   L  L L    +             L YL L +N
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 401 SIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ-LATLGLRHCHLGSRFPSWLHS 459
           ++      +   L  L  + L  N ++ + +        L  L L    +    P     
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 460 QKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSN 519
              L  L L  + ++ ++P    +    +  L L+ N            A L+     S+
Sbjct: 200 LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258

Query: 520 SFSGALPLISSNLIELDFSNNSISG 544
               +LP   +       + N + G
Sbjct: 259 EVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 48/280 (17%), Positives = 75/280 (26%), Gaps = 31/280 (11%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGM--NDNWIPPFQLATLGLRH 446
                 + L  N I      S      L  + L  N L  +                  +
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 447 CHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLT 506
             L S  P+  H    L+ L L   G+   +    +   + +  L L  N +     +  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 507 NAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLR 566
                                   NL  L    N IS             L  L  L L 
Sbjct: 150 RDLG--------------------NLTHLFLHGNRISSVPERAFR----GLHSLDRLLLH 185

Query: 567 GNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLK 626
            N +       + +   LM L L  N  +     +L  L +LQ L L  N       +  
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245

Query: 627 NCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKF 666
               L       +E   ++P    +R +   +  L +N  
Sbjct: 246 LWAWLQKFRGSSSEVPCSLP----QRLAGRDLKRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 49/212 (23%), Positives = 70/212 (33%), Gaps = 5/212 (2%)

Query: 117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWN 176
                + L  N    V       +  NL  L L       +       L+ L+ LDLS N
Sbjct: 32  AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 177 -FLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
             L   +     GL  L  L L             +   L +L  L L    L  LP   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 236 IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLL 295
             +   LT L L  N+  +S       GL  L  L L +N      P   ++L  L  L 
Sbjct: 149 FRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 296 LDSNRFNSSIPNWLYRFNRLESLGVSNNSLQG 327
           L +N  ++     L     L+ L +++N    
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 6e-09
 Identities = 46/256 (17%), Positives = 77/256 (30%), Gaps = 7/256 (2%)

Query: 216 PSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRN 275
            +  ++ L   ++ H+P  +      LT L L  N         +    +          
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 276 NFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMAS 335
             +   P     L  L  L LD        P        L+ L + +N+LQ     +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 336 LCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYL 395
           L NL  + L   ++S      F          L+ L+L  + V+    +       L  L
Sbjct: 152 LGNLTHLFLHGNRISSVPERAF-----RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 396 DLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPS 455
            L  N++      +L  L  LQ++ L+ N              L         +    P 
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 456 WLHSQK--HLNYLDLS 469
            L  +    L   DL 
Sbjct: 267 RLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 3/206 (1%)

Query: 490 VLDLSFNQIHGQIPN-LTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFH 548
            + L  N+I             L +L L SN  +       + L  L+  + S +  +  
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 549 FICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 608
                 H L +L  L+L    LQ      +     L  L L +N        +   L +L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 609 QSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFH 667
             L L  N +S     + +   +L  L + +N      P    +    M + +   N   
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLS 214

Query: 668 SLLPKGLCDLAFLQIVDLADNNLSGE 693
           +L  + L  L  LQ + L DN    +
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCD 240

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 46/280 (16%), Positives = 86/280 (30%), Gaps = 30/280 (10%)

Query: 583 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGE-NEF 641
               + L  N+ +     S  +  +L  L L  N L+    +     ALL       N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNL 701
           + ++         R+  L L       L P     LA LQ + L DN L         +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 702 RAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSK 761
             +  L  H  +                          +          L+ +  +   +
Sbjct: 153 GNLTHLFLHGNR--------------------------ISSVPERAFRGLHSLDRLLLHQ 186

Query: 762 NNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMS 821
           N  +   P    +L  L +  L  N  +    E++  +R+L+ +  + N    +   +  
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARP 245

Query: 822 SLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCG 861
              +L     S++ +   +P     +     +   NDL G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA--NDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 42/304 (13%), Positives = 73/304 (24%), Gaps = 54/304 (17%)

Query: 511 LEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFL 570
            + + L  N  S            L       +                 Q        L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 571 QGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTA 630
           +      +     L  L L         P     L +LQ L+L+ N L            
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---------- 143

Query: 631 LLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690
                         +P         +  L L  N+  S+  +    L  L  + L  N +
Sbjct: 144 --------------LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 691 SGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCI 750
           +   P    +L  ++TL   A                                  E    
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPT--------------------------EALAP 223

Query: 751 LNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLN 810
           L  ++ +  + N +             LQ F  S++     +P+    +   +    + N
Sbjct: 224 LRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAAN 279

Query: 811 QLSG 814
            L G
Sbjct: 280 DLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 33/287 (11%), Positives = 71/287 (24%), Gaps = 30/287 (10%)

Query: 577 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTI-HSLKNCTALLTLD 635
           C    +  +            +P+ + +  + Q + L  N +S     S + C  L  L 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 636 VGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVP 695
           +  N                  + +  + +  S+ P     L  L  + L          
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-----DRCGL 117

Query: 696 RCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVR 755
           + +                                  L                      
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL---------------------T 156

Query: 756 IIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE 815
            +    N  S         L +L    L  N      P +   +  L ++    N LS  
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 816 IPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDLCGA 862
             ++++ L  L +L L++N       +            + +++  +
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 35/162 (21%), Positives = 50/162 (30%), Gaps = 8/162 (4%)

Query: 118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNF 177
            L YL L  N  Q +        +GNL +L L   +   +       L +L  L L  N 
Sbjct: 130 ALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 178 LYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIA 237
           +   +      L  L  L L   NLS           L +L  LRL+             
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTE--ALAPLRALQYLRLNDNPWVCDCRA-RP 245

Query: 238 NFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG 279
            ++ L       ++   S        L       L  N+ QG
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQR----LAGRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 3e-11
 Identities = 42/205 (20%), Positives = 69/205 (33%), Gaps = 11/205 (5%)

Query: 122 LDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVE 181
           ++    +     +P  +    +   L+LS           L   + L  L+L    L   
Sbjct: 15  VNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 182 NLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFST 241
            +        L  L    ++ ++      +  TLP+L  L +S  +L  LP  A+     
Sbjct: 71  QVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 242 LTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRF 301
           L  L L  N+      P  +    +L  L L  NN        L  L +L  LLL  N  
Sbjct: 126 LQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 302 NSSIPNWLYRFNRLESLGVSNNSLQ 326
             +IP   +  + L    +  N   
Sbjct: 185 -YTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 40/186 (21%), Positives = 53/186 (28%), Gaps = 8/186 (4%)

Query: 117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWN 176
           K  + L LS N          +     L  LNL   +   +          L  L     
Sbjct: 31  KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDL 84

Query: 177 FLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAI 236
                    L G +      L        S  L     L  L +L L   +L  LPP  +
Sbjct: 85  SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 237 ANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLL 296
                L  L L  N          + GL  L  L L+ N+    IP+G      L    L
Sbjct: 145 TPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 297 DSNRFN 302
             N + 
Sbjct: 203 HGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 37/223 (16%), Positives = 65/223 (29%), Gaps = 15/223 (6%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
            K+   L LS N +      +L   + L  ++L   EL  +  +   P         +  
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
                         +            S+P        ++  L L  N++    P L   
Sbjct: 90  QSLPLLGQTLPALTVLD---VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 509 AQLEVLSLGSNSFSGALPLIS----SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLY 564
                    +N+    LP        NL  L    NS      + I         L F +
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-----LYTIPKGFFGSHLLPFAF 201

Query: 565 LRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLIS 607
           L GN       +C + Y    + D + N +     + + ++ S
Sbjct: 202 LHGNPWL---CNCEILYFRRWLQDNAENVYVWKQGVDVKAMTS 241

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 38/215 (17%), Positives = 61/215 (28%), Gaps = 13/215 (6%)

Query: 213 NTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDL 272
           + + S +++   +  L  LPP         T L L  N    +F    +    +L  L+L
Sbjct: 7   SKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLL-YTFSLATLMPYTRLTQLNL 62

Query: 273 RRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRS 332
            R        +G   +     L  +  +    +   L     L+       SL    +R 
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 333 MASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNL 392
           +  L  L         L   +            +   +  L            L   +NL
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--------LNGLENL 174

Query: 393 YYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELN 427
             L L  NS+   IP        L F  L  N   
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 4/181 (2%)

Query: 461 KHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNS 520
           K    L LS + +            +++  L+L   ++     + T      +    +  
Sbjct: 31  KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 521 FSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMN 580
            S  L   +   + +   + +   S+         EL++L       N L+         
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG---NELKTLPPGLLTP 146

Query: 581 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENE 640
              L  L L+NN  T      L  L +L +L L++N+L            L    +  N 
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

Query: 641 F 641
           +
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 8/205 (3%)

Query: 506 TNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYL 565
           +  A    ++    + +   P +  +   L  S N +       +        +L  L L
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM----PYTRLTQLNL 62

Query: 566 RGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSL 625
                +            L  LDLS+N+      +                  S  + +L
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 626 KNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDL 685
           +    L  L +  NE     P  +        +  L +N    L    L  L  L  + L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-SLANNNLTELPAGLLNGLENLDTLLL 179

Query: 686 ADNNLSGEVPRCIHNLRAMVTLNSH 710
            +N+L   +P+       +     H
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLH 203

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 771 EVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLN 830
           EV+ + +    N      T  +P  +   +    +  S N L      ++   T L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 831 LSNNN 835
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 5/180 (2%)

Query: 680 LQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVV 739
             I+ L++N L       +     +  LN    +  + Q         +  +        
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS-----HN 87

Query: 740 MKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAM 799
                      L  + ++D S N  +      +  L  LQ   L  N      P  +   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 800 RSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGNDL 859
             LE +  + N L+      ++ L  L+ L L  N+L               +   GN  
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 1e-09
 Identities = 44/462 (9%), Positives = 104/462 (22%), Gaps = 23/462 (4%)

Query: 119 LSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQF----VGMIPPQLGNLSNLQYLDLS 174
           +  LD+   +    +    +  +   + + L            I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 175 WNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPL 234
            N L    +  +          +  ++L            L S ++  L   Q  HL   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDN 122

Query: 235 AIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHL 294
            + +       + L +           +  +     +   +  +         +++    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 295 LLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEIS 354
                     + +   +   L+       S   R +  + +       +        ++ 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 355 EIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLS 414
                      S     +                        L   S+ G      G   
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 415 TLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGIT 474
             + +     +L  +                     +RF   L    +            
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 475 GSIPNIFWSSASQIYVLDLSFNQIHGQIPN-----LTNAAQLEVLSLGSNSFSG------ 523
           G          S + VL L+   +     +     L     L  L L +N          
Sbjct: 363 G-----LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 524 --ALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFL 563
             ++      L +L   +   S  +   +     +   L+ +
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 9e-09
 Identities = 46/447 (10%), Positives = 100/447 (22%), Gaps = 24/447 (5%)

Query: 416 LQFIDLSYNELNGMNDNWIPPF--QLATLGLRHCHLGSR----FPSWLHSQKHLNYLDLS 469
           +Q +D+   EL+      + P   Q   + L  C L         S L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 470 YSGITG----SIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGAL 525
            + +       +     + + +I  L L    + G    + ++    + +L     S  L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 526 PLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLM 585
              +   +  +   +         + Y +      + L                N     
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 586 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENI 645
                  +   + P  L +L          N            +               +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 646 PTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 705
                        L         +            +  +     S +      N     
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGI-----TAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 706 TLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFS 765
                    ++    L +    S +             A     +   +           
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 766 GKIPLEVTNLKALQSFNLSNNFFTGR----IPESIGAMRSLESIDFSLNQLSGEIPQSMS 821
                       L+   L++   +      +  ++ A  SL  +D S N L       + 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 822 S-----LTYLNHLNLSNNNLTGKIPSS 843
                    L  L L +   + ++   
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 2e-08
 Identities = 49/470 (10%), Positives = 112/470 (23%), Gaps = 32/470 (6%)

Query: 242 LTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG----PIPEGLQNLTSLKHLLLD 297
           + +LD+   +  ++     +  L Q   + L            I   L+   +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 298 SNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIF 357
           SN       + + +  +  S  +   SLQ   +          ++          +S+  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 358 DIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQ 417
              +G       +L  +       L Y      +   L     +       ++ +    +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 418 FIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSI 477
                  +    +   +   +L + G+   +                    S       +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 478 PNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDF 537
             +          L   +    G            + +  S            +      
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 538 SNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGN 597
               +         +               + L        +   N  + D    +    
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC-- 361

Query: 598 LPISLGSLISLQSLHLRKNNLSGT-----IHSLKNCTALLTLDVGENEFVENIPTWIGER 652
                     L+ L L   ++S +       +L    +L  LD+  N         +G+ 
Sbjct: 362 -QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC--------LGDA 412

Query: 653 FSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLR 702
               +V  +R                 L+ + L D   S E+   +  L 
Sbjct: 413 GILQLVESVRQPGCL------------LEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 3e-08
 Identities = 66/451 (14%), Positives = 122/451 (27%), Gaps = 26/451 (5%)

Query: 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIA----NFSTLTTLDL 247
           ++ LD+    LS A  W  +   L     +RL  C L       I+        L  L+L
Sbjct: 4   IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 248 LYNQFDNSFVPNWVFGL----IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNS 303
             N+  +  V   + GL     ++  L L+     G     L +        L     + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSD 121

Query: 304 SIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGC 363
           ++          E L      L+   +   +        + S ++   +  E+    +  
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 364 VSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSY 423
             +G+ +L          L     +   +   +  +   +     SL  L+         
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 424 NELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWS 483
                      P  +L TL +  C + ++    L             S     + +    
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 484 SASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSIS 543
              +  +      +          AA     S         L L  SN    D     + 
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 544 GSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFTGNLP 599
             +             L+ L+L    +       L    +   +L  LDLSNN       
Sbjct: 362 QGLGQPGS-------VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 600 ISLGSLI-----SLQSLHLRKNNLSGTIHSL 625
           + L   +      L+ L L     S  +   
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 3e-08
 Identities = 58/452 (12%), Positives = 111/452 (24%), Gaps = 18/452 (3%)

Query: 167 NLQYLDLSWNFLYVENLWWL-PGLSFLKDLDLSYVNLSK--ASDWLRVTNTLPSLVKLRL 223
           ++Q LD+    L       L P L   + + L    L++    D        P+L +L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 224 SRCQL-----HHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQ 278
              +L     H +          +  L L       +        L  L  L     +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 279 GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCN 338
                GLQ L                    L   +      V       + +    +  N
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 339 LRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLS 398
              V + C  L     ++  +         +        V+   + +     +    D+ 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 399 NNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLH 458
              +   +      L TL   +         +   +   + +   L              
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 459 SQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGS 518
             + L         +     +   +  S       S      +       +   +   G 
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHF-----SSVLAQNRFLLELQISNNRLEDAGV 357

Query: 519 NSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----L 574
                 L    S L  L  ++  +S S    +         L+ L L  N L       L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 575 TDCWMNYQ-NLMILDLSNNKFTGNLPISLGSL 605
            +        L  L L +  ++  +   L +L
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 61/468 (13%), Positives = 116/468 (24%), Gaps = 34/468 (7%)

Query: 143 NLRYLNLSYTQFVGMIPPQL-GNLSNLQYLDLSWNFLYVENLWWLP----GLSFLKDLDL 197
           +++ L++   +       +L   L   Q + L    L       +         L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 198 SYVNLSKA-----SDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQF 252
               L           L+  +    + KL L  C L       +++        L   Q 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSC--KIQKLSLQNCCLTGAGCGVLSSTLR----TLPTLQE 116

Query: 253 DNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRF 312
            +          +QL+   L     +    +      S       ++   +         
Sbjct: 117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 313 NRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGL-EIL 371
           +  +        L   +  S   L  L+         +             +        
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 372 VLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMND 431
            L    ++      L     L  L +    I       L  +   +      +       
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 432 NWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVL 491
           +        TL    C L S +               S       +  +  S+       
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 356

Query: 492 DLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS--GALPLISS-----NLIELDFSNNSISG 544
                Q  GQ       + L VL L     S      L ++     +L ELD SNN +  
Sbjct: 357 VRELCQGLGQ-----PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

Query: 545 SIFHFICYR-AHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMIL 587
           +    +          L+ L L   +   E    L     +  +L ++
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 529 SSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNL 584
           S ++  LD     +S + +  +      L++ Q + L    L       ++        L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELL---PLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 585 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSG 620
             L+L +N+        +   +   S  ++K +L  
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 6e-05
 Identities = 52/435 (11%), Positives = 101/435 (23%), Gaps = 35/435 (8%)

Query: 116 LKHLSYLDLSYNDFQGV---QIPRFICSMGNLRYLNLSYTQFVGMIPPQLG-----NLSN 167
           L+    + L            I   +     L  LNL   +   +    +          
Sbjct: 26  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 168 LQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQ 227
           +Q L L    L       L                        +      L+  +    +
Sbjct: 86  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 145

Query: 228 LHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQN 287
           L        A         L           +        V +  +         E L+ 
Sbjct: 146 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 205

Query: 288 LTSLKH-----LLLDSNRFNSSIPNWLYRFNRLESLGVS---------NNSLQGRVIRSM 333
            +          L       +S+       N+L  +G++         ++ L+   I   
Sbjct: 206 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 265

Query: 334 ASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLY 393
                    +   ++  + + E+    +     G  +L          L     +  +  
Sbjct: 266 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 325

Query: 394 YLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSR- 452
               S+ S V      L  L                     P   L  L L  C +    
Sbjct: 326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 385

Query: 453 ---FPSWLHSQKHLNYLDLSYSGITGS----IPNIFWSSASQIYVLDLSFNQIHGQIPNL 505
                + L +   L  LDLS + +  +    +          +  L L       ++ + 
Sbjct: 386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

Query: 506 TNAAQ-----LEVLS 515
             A +     L V+S
Sbjct: 446 LQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 751 LNLVRIIDFSKNNFSGKIPLEV-TNLKALQSFNLSNNFFTGR----IPESIGAMRSLESI 805
           L++ + +D      S     E+   L+  Q   L +   T      I  ++    +L  +
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 806 DFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTG 838
           +   N+L       +          +   +L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 583 NLMILDLSNNKFTGN-LPISLGSLISLQSLHLRKNNLSGTI-----HSLKNCTALLTLDV 636
           ++  LD+   + +       L  L   Q + L    L+         +L+   AL  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 637 GENEFVENIPTWIGE 651
             NE  +     + +
Sbjct: 63  RSNELGDVGVHCVLQ 77

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 38/243 (15%), Positives = 70/243 (28%), Gaps = 10/243 (4%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
                   + ++DLS +  +   +   +     L+ L+L   +    I   L   SNL  
Sbjct: 40  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99

Query: 171 LDLSWNFL-----YVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSR 225
           L+LS             L     L  L                +   +   + + L   R
Sbjct: 100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159

Query: 226 CQLHHLPPLA-IANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR-NNFQGPIPE 283
             L        +     L  LDL  +    +      F L  L  L L R  +       
Sbjct: 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 219

Query: 284 GLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVM 343
            L  + +LK L +     + ++         L  L ++ +        ++ +  N     
Sbjct: 220 ELGEIPTLKTLQVFGIVPDGTLQLLK---EALPHLQINCSHFTTIARPTIGNKKNQEIWG 276

Query: 344 LSC 346
           + C
Sbjct: 277 IKC 279

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 32/266 (12%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 587 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIP 646
           LDL+      ++   L S   + +    ++ +   +    +   +  +D+  +    +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVD------LADNNLSGEVPRCIHN 700
             I  + S++  L L   +    +   L   + L  ++       ++  L   +  C   
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 701 LRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFS 760
               ++      +      + + S   +   L      + K   +        +  +D S
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 761 KN-NFSGKIPLEVTNLKALQSFNLSN-NFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQ 818
            +         E   L  LQ  +LS            +G + +L+++        G +  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 819 SMSSLTYLNHLNLSNNNLTGKIPSST 844
              +L    HL ++ ++ T     + 
Sbjct: 244 LKEALP---HLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 39/273 (14%), Positives = 82/273 (30%), Gaps = 13/273 (4%)

Query: 395 LDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHL-GSRF 453
           LDL+  ++   +   L     + F     + ++        PF++  + L +  +  S  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAF-RCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 454 PSWLHSQKHLNYLDLSYSGITGSIPNIF--------WSSASQIYVLDLSFNQIHGQIPNL 505
              L     L  L L    ++  I N           + +      + +   +      L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 506 TNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYL 565
                             A+  +S  + +L+ S    +                +     
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 566 RGNFLQGELTDCWMNYQNLMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLSGTIHS 624
               L+ +    +     L  L LS          + LG + +L++L +      GT+  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 625 LKNCTALLTLDVGENEFVENIPTWIGERFSRMV 657
           LK   AL  L +  + F       IG + ++ +
Sbjct: 244 LKE--ALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 7/159 (4%)

Query: 753 LVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQL 812
           L + +D +  N    +   + +   + +F    +F    + E     R ++ +D S + +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58

Query: 813 SGE-IPQSMSSLTYLNHLNLSNNNLTGKIPSS----TQLQSFDASSYAGNDLCGAPLPRN 867
               +   +S  + L +L+L    L+  I ++    + L   + S  +G          +
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 868 CSEHVSTPEDENGDEDELDYWLYVSIALGFMGGFWCLIG 906
               +         +    +       +        L G
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 157

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 586 ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENI 645
           +L L++   T      L  L+ +  L L  N L     +L     L  L   +N      
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 646 PTWIGERFSRMVVLILRSNKFHSL-LPKGLCDLAFLQIVDLADNNLSGE 693
                    R+  L+L +N+       + L     L +++L  N+L  E
Sbjct: 60  GVA---NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 8e-07
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 394 YLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRF 453
            L L++  +   +   L  L  +  +DLS+N L  +         L  L           
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA--LEN 57

Query: 454 PSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHG 500
              + +   L  L L  + +  S       S  ++ +L+L  N +  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
             L  L  +++LDLS+N  +   +P  + ++  L  L    +         + NL  LQ 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQ--ASDNALENVDGVANLPRLQE 69

Query: 171 LDLSWNFL-YVENLWWLPGLSFLKDLDLSYVNLSKASDWL-RVTNTLPSLVKL 221
           L L  N L     +  L     L  L+L   +L +      R+   LPS+  +
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 145 RYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSK 204
           R L+L++      +   L  L  + +LDLS N L        P L+ L+ L++   +   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQAS-DN 53

Query: 205 ASDWLRVTNTLPSLVKLRLSRCQLHHLPPL-AIANFSTLTTLDLLYNQF 252
           A + +     LP L +L L   +L     +  + +   L  L+L  N  
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 490 VLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHF 549
           VL L+   +   + +L     +  L L  N      P + + L  L+    S        
Sbjct: 2   VLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASD---NALE 56

Query: 550 ICYRAHELKKLQFLYLRGNFLQG-ELTDCWMNYQNLMILDLSNNKFTG--NLPISLGSLI 606
                  L +LQ L L  N LQ        ++   L++L+L  N       +   L  ++
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 607 -SLQSL 611
            S+ S+
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 27/122 (22%), Positives = 39/122 (31%), Gaps = 9/122 (7%)

Query: 513 VLSLGSNSFSGALPLIS-SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQ 571
           VL L     +    L     +  LD S+N +          R  E        L+ +   
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE-------VLQASDNA 54

Query: 572 GELTDCWMNYQNLMILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTA 630
            E  D   N   L  L L NN+         L S   L  L+L+ N+L       +    
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 631 LL 632
           +L
Sbjct: 115 ML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN 254
           L L++ +L+           L  +  L LS  +L  LPP      + L  L++L    + 
Sbjct: 3   LHLAHKDLTVLCHL----EQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 255 SFVPNWVFGLIQLVFLDLRRNNFQG-PIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFN 313
               + V  L +L  L L  N  Q     + L +   L  L L  N              
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 314 RLESL 318
            L S+
Sbjct: 115 MLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 121 YLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYV 180
            L L++ D     +   +  +  + +L+LS+ +   + PP L  L  L+ L    +   +
Sbjct: 2   VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQ--ASDNAL 55

Query: 181 ENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFS 240
           EN+  +  L  L++L L    L +++    + +  P LV L L    L     +      
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 241 TLTTLDLL 248
            L ++  +
Sbjct: 115 MLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP--------------------- 793
           R++  +  + +  +   +  L  +   +LS+N      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 794 ESIGAMRSLESIDFSLNQL-SGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQS 848
           + +  +  L+ +    N+L      Q + S   L  LNL  N+L  +     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 221 LRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGP 280
           L L+   L  L  L       +T LDL +N+     +P  +  L  L  L    N  +  
Sbjct: 3   LHLAHKDLTVLCHLE--QLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALE-- 56

Query: 281 IPEGLQNLTSLKHLLLDSNRFNS-SIPNWLYRFNRLESLGVSNNSL------QGRVIRSM 333
             +G+ NL  L+ LLL +NR    +    L    RL  L +  NSL      Q R+   +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 334 ASLCNL 339
            S+ ++
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 465 YLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGA 524
            L L++  +T  + ++       +  LDLS N++    P L     LEVL    N+    
Sbjct: 2   VLHLAHKDLT-VLCHL--EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 525 LPLISSNLI-ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGE 573
             + +   + EL   NN +  S             +L  L L+GN L  E
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQE 105

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 39/328 (11%), Positives = 83/328 (25%), Gaps = 21/328 (6%)

Query: 114 LDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQF----VGMIPPQLGNLSNLQ 169
           ++ K L    ++  D +   +   +    +++ + LS           +   + +  +L+
Sbjct: 5   IEGKSLKLDAITTEDEK--SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 170 YLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLH 229
             + S  F           L  L    L    L                  +        
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-T 121

Query: 230 HLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLT 289
            L  L + N            +       N        +   +   N            T
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 290 SLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKL 349
              H LL + +   +        + L         L+   ++         S +   +K 
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 350 SQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFS 409
              + E+        + G   +V           +   +   L  L L  N I      +
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDA---------FSKLENIGLQTLRLQYNEIELDAVRT 292

Query: 410 L-----GHLSTLQFIDLSYNELNGMNDN 432
           L       +  L F++L+ N  +  +D 
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEEDDV 320

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 6e-05
 Identities = 40/313 (12%), Positives = 75/313 (23%), Gaps = 11/313 (3%)

Query: 267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFN----SSIPNWLYRFNRLESLGVSN 322
           L    +   + +  +   L    S+K ++L  N         +   +     LE    S+
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 323 NSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHL 382
                       +L  L   +L C KL                  ++ L         +L
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 383 TYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATL 442
                         ++       +     +   L+ I    N L   +         +  
Sbjct: 129 HNN--GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 443 GLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQI 502
            L    +          +  L         +          +      L ++        
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 503 PNLTNAAQLEVLSLGSNSFSGALP-LISSNLIELDFSNNSISGSIFHFICYR-AHELKKL 560
               N   L   + G+ +   A   L +  L  L    N I       +      ++  L
Sbjct: 247 ELGLNDCLLS--ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 561 QFLYLRGNFLQGE 573
            FL L GN    E
Sbjct: 305 LFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 34/322 (10%), Positives = 90/322 (27%), Gaps = 30/322 (9%)

Query: 556 ELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGN----LPISLGSLISLQSL 611
           E K L+   +     +  +    +   ++  + LS N         L  ++ S   L+  
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 612 HLRKNN--------------LSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMV 657
                               L   +        +   D       +        + + + 
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 658 VLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQY 717
            L L +N         +        V+    N            R          K  Q 
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 718 QFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKA 777
             LL+  +     +  E    ++    A  + +  L    +   +  S  + + + +   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 778 LQSFNLSNNFFTGRIPESIGAM------RSLESIDFSLNQLSGEIPQSMSS-----LTYL 826
           L+   L++   + R   ++           L+++    N++  +  +++ +     +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 827 NHLNLSNNNLTGKIPSSTQLQS 848
             L L+ N  + +     +++ 
Sbjct: 305 LFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 39/316 (12%), Positives = 86/316 (27%), Gaps = 33/316 (10%)

Query: 350 SQEISEIFDIFSGCVSSGLEILVLRGSSVSG----HLTYKLGQFKNLYYLDLSNNSIV-- 403
           +++   +F +     S  ++ +VL G+++       L+  +   K+L   + S+      
Sbjct: 17  TEDEKSVFAVLLEDDS--VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV 74

Query: 404 -GPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKH 462
              IP +L  L          + +   ++ + P  Q   +     H         ++   
Sbjct: 75  KDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 134

Query: 463 LNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFS 522
                     +     N    +A  +  +    N++                 L +    
Sbjct: 135 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 194

Query: 523 GALPLISSN-------------LIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNF 569
                                 L  LD  +N+ +      +         L+ L L    
Sbjct: 195 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 254

Query: 570 LQGELTDCWMNY------QNLMILDLSNNKFTGNLPISLGSLI-----SLQSLHLRKNNL 618
           L        ++         L  L L  N+   +   +L ++I      L  L L  N  
Sbjct: 255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

Query: 619 SGTIHSLKNCTALLTL 634
           S     +     + + 
Sbjct: 315 SEEDDVVDEIREVFST 330

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 9e-06
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 8/139 (5%)

Query: 111 PSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQY 170
               +      LDL         I     ++     ++ S  +           L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 171 LDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH 230
           L ++ N +          L  L +L L+  +L +    L    +L SL  L + R  + +
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLASLKSLTYLCILRNPVTN 126

Query: 231 LP---PLAIANFSTLTTLD 246
                   I     +  LD
Sbjct: 127 KKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 143 NLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNL 202
             R L+L   +   +I      L     +D S N      +  L G   L+ L    VN 
Sbjct: 19  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN-----EIRKLDGFPLLRRLKTLLVNN 72

Query: 203 SKASDWL-RVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDN---SFVP 258
           ++       +   LP L +L L+   L  L  L         T   +          +  
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 259 NWVFGLIQLVFLDLRR 274
             ++ + Q+  LD ++
Sbjct: 133 YVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 5/121 (4%)

Query: 382 LTYKLGQFKN---LYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQ 438
           L  +  Q+ N      LDL    I   I      L     ID S NE+  + D +    +
Sbjct: 7   LIEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRR 64

Query: 439 LATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQI 498
           L TL + +  +         +   L  L L+ + +         +S   +  L +  N +
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

Query: 499 H 499
            
Sbjct: 125 T 125

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 4/138 (2%)

Query: 285 LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML 344
             N    + L L   +    I N     ++ +++  S+N ++   +     L  L+++++
Sbjct: 14  YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLV 70

Query: 345 SCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVG 404
           +  ++ +    +           L    L        L   L     L  L     +   
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS-LKSLTYLCILRNPVTNKKH 129

Query: 405 PIPFSLGHLSTLQFIDLS 422
              + +  +  ++ +D  
Sbjct: 130 YRLYVIYKVPQVRVLDFQ 147

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 51/329 (15%), Positives = 96/329 (29%), Gaps = 29/329 (8%)

Query: 510 QLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNF 569
           Q   L L +   S +LP +  +L  L  S NS++  +             L+ L +  N 
Sbjct: 39  QAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQ-------SLKSLLVDNNN 89

Query: 570 LQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCT 629
           L+            L  L +SNN+      +   S + +  +          +       
Sbjct: 90  LKA----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 630 ALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNN 689
           A     + E   ++N+P           +  L              ++            
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 690 LSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKC 749
           L+                 S     ++  +L      P +              +     
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLT--------FLDVSENIFS 257

Query: 750 ILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSL 809
            L+ +    +  N  S +I        +L+  N+SNN     +P        LE +  S 
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASF 313

Query: 810 NQLSGEIPQSMSSLTYLNHLNLSNNNLTG 838
           N L+ E+P+   +L     L++  N L  
Sbjct: 314 NHLA-EVPELPQNLK---QLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 46/318 (14%), Positives = 80/318 (25%), Gaps = 17/318 (5%)

Query: 117 KHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLS-W 175
           +    L+L+        +P       +L  L  S       +P    +L +L   + +  
Sbjct: 38  RQAHELELNNLGLS--SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
               +  L    G+S  +   L  +  S     + V N     +       +        
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 236 IANFSTLTTLDL--LYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKH 293
           +     L  L         +NS        L     +       + P  + L  LT++  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 294 LLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEI 353
                       P+      R   L       Q      ++         L         
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 354 SEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413
           S         +   LE L +  +     L         L  L  S N +   +P    +L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERLIASFNHLAE-VPELPQNL 326

Query: 414 STLQFIDLSYNELNGMND 431
             L    + YN L    D
Sbjct: 327 KQL---HVEYNPLREFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 46/348 (13%), Positives = 96/348 (27%), Gaps = 34/348 (9%)

Query: 192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQ 251
             +L+L+ + LS   +        P L  L  S   L  LP L      +L +L +  N 
Sbjct: 40  AHELELNNLGLSSLPELP------PHLESLVASCNSLTELPEL----PQSLKSLLVDNNN 89

Query: 252 FDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYR 311
                    +   + +    L +                   L    +   S        
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 312 FNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEIL 371
               E   + N      +     SL  L  + LS   +    + + ++        L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 372 VLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMND 431
               + +                 +   +                  +  S   L+   +
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDL---------------PELPQSLTFLDVSEN 254

Query: 432 NWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVL 491
            +    +L           +   S       L  L++S + +   +P +      ++  L
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP----PRLERL 309

Query: 492 DLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSN 539
             SFN +  ++P L     L+ L +  N      P I  ++ +L  ++
Sbjct: 310 IASFNHL-AEVPELPQ--NLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 53/330 (16%), Positives = 90/330 (27%), Gaps = 18/330 (5%)

Query: 139 CSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPG-LSFLKDLDL 197
           C       L L+       +P    +L   + L  S N L    L  LP  L  L   + 
Sbjct: 35  CLDRQAHELELNNLGLSS-LPELPPHL---ESLVASCNSL--TELPELPQSLKSLLVDNN 88

Query: 198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFV 257
           +   LS     L       + ++          L  + + N S     DL  +    +  
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 258 PNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLE- 316
            N +  L +L  L      +             L    + +          L     L  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 317 --SLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLR 374
             +      +L        A       +                       S L   +  
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 375 GSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWI 434
            ++ S  +        +L  L++SNN ++  +P     L  L     S+N L  + +   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLAEVPEL-- 322

Query: 435 PPFQLATLGLRHCHLGSRFPSWLHSQKHLN 464
            P  L  L + +  L   FP    S + L 
Sbjct: 323 -PQNLKQLHVEYNPL-REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 547 FHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 606
                     L +L       N    E+        +L  L++SNNK    LP       
Sbjct: 249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP--- 304

Query: 607 SLQSLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVE--NIPTWIGE 651
            L+ L    N+L+      +N   L  L V  N   E  +IP  + +
Sbjct: 305 RLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 16/134 (11%)

Query: 115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLS 174
           D       +L  +             +  L             I        +L+ L++S
Sbjct: 233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 292

Query: 175 WNFLYVENLWWLP-GLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP 233
            N      L  LP     L+ L  S+ +L++      V     +L +L +    L   P 
Sbjct: 293 NN-----KLIELPALPPRLERLIASFNHLAE------VPELPQNLKQLHVEYNPLREFPD 341

Query: 234 LAIANFSTLTTLDL 247
           +      ++  L +
Sbjct: 342 I----PESVEDLRM 351

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 5/134 (3%)

Query: 123 DLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVEN 182
           +L     +  Q+   +    +     L          P L   +    L+   +      
Sbjct: 3   ELKPEQVE--QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATLR 58

Query: 183 LWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTL 242
           +     +  L  L+LS   L +  D   +    P+L  L LS  +L     L       L
Sbjct: 59  II-EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 243 TTLDLLYNQFDNSF 256
             L L  N   ++F
Sbjct: 118 EELWLDGNSLSDTF 131

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 27/231 (11%), Positives = 57/231 (24%), Gaps = 22/231 (9%)

Query: 389 FKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCH 448
            +N   L      +      +      L+ I++S N++  + +  +         +R   
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 449 LGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 508
             +       + ++L  L       TG            +  + L             N+
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 509 AQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGN 568
                                  L             I        +  +  +      N
Sbjct: 148 FV--------------------GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 569 FLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLS 619
            L+    D +      +ILD+S  +        L +L  L++      NL 
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 26/211 (12%), Positives = 65/211 (30%), Gaps = 2/211 (0%)

Query: 212 TNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD 271
           ++   + ++LR    +L  +   A + F  L  +++  N        +    L +L  + 
Sbjct: 25  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 84

Query: 272 LRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIR 331
           + + N    I             LL SN     +P+     +  +   + +      +  
Sbjct: 85  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV--LLDIQDNINIHT 142

Query: 332 SMASLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKN 391
              +     S     + L++   +     +   +   E+ +   +++             
Sbjct: 143 IERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASG 202

Query: 392 LYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422
              LD+S   I     + L +L  L+     
Sbjct: 203 PVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 28/217 (12%), Positives = 52/217 (23%), Gaps = 27/217 (12%)

Query: 133 QIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFL 192
           +IP  +    N   L    T+   +         +L+ +++S N +       +      
Sbjct: 22  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 193 KDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLD------ 246
                     +           LP+L  L +S   + HLP +   +      LD      
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 247 -------------------LLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQN 287
                               L              G           NN +    +    
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 288 LTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNS 324
            +    L +   R +S     L    +L +    N  
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 29/254 (11%), Positives = 72/254 (28%), Gaps = 44/254 (17%)

Query: 580 NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGEN 639
              N + +    +  T    ++   L  + +L      ++ TI  ++    L+ L++ +N
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 640 EFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIH 699
           +  +  P     + + +                                           
Sbjct: 74  QITDLAPLKNLTKITELE-------------------------------------LSGNP 96

Query: 700 NLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDF 759
                      + K +           P   +     L +   +      +  L  +   
Sbjct: 97  LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156

Query: 760 SKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS 819
           S  N        + NL  L +    +N  +   P  + ++ +L  +    NQ+S   P  
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-- 212

Query: 820 MSSLTYLNHLNLSN 833
           +++ + L  + L+N
Sbjct: 213 LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 20/218 (9%)

Query: 116 LKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSW 175
           L +   +    ++            +  +  L+   T    +    +  L+NL  L+L  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 176 NFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLA 235
           N +               +L  + +    A   L+   TL            L  L  L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 236 I-----------ANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEG 284
           +           +  + LT L  L            +  L +L  L    N      P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 285 LQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSN 322
           L +L +L  + L +N+ +   P  L   + L  + ++N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 38/249 (15%), Positives = 65/249 (26%), Gaps = 41/249 (16%)

Query: 388 QFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHC 447
              N   +    +++   +  +   L  +  +      +       I   Q     L   
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT-----IEGVQYLN-NLIGL 68

Query: 448 HLGSRFPSWLHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTN 507
            L     + L   K+L  +                +    I  LDL+  QI    P    
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA-- 126

Query: 508 AAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRG 567
                                         SN  +     + I   +         YL  
Sbjct: 127 ----------------------------GLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

Query: 568 NFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKN 627
              Q        N   L  L   +NK +      L SL +L  +HL+ N +S  +  L N
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD-VSPLAN 215

Query: 628 CTALLTLDV 636
            + L  + +
Sbjct: 216 TSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 39/238 (16%), Positives = 69/238 (28%), Gaps = 18/238 (7%)

Query: 354 SEIFDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHL 413
           + I  IF     +    +    S+V+  +T        +  L      +   I   + +L
Sbjct: 7   TAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYL 62

Query: 414 STLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGI 473
           + L  ++L  N++  +                   L       + +   L  +       
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKI------TELELSGNPLKNVSAIAGLQSIKTLDLTS 116

Query: 474 TGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLI 533
           T        +  S + VL L  NQI    P         +    +           S L 
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176

Query: 534 ELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN 591
            L   +N IS             L  L  ++L+ N +         N  NL I+ L+N
Sbjct: 177 TLKADDNKISDISPL------ASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 14/215 (6%)

Query: 215 LPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR 274
           L + +K+   +  +      A  +   +TTL               V  L  L+ L+L+ 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKD 72

Query: 275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMA 334
           N      P       +   L  +  +  S+I           +     +      + ++ 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 335 SLCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGHLTY-------KLG 387
            L    + + +   L+   +  +        S L  L       +             L 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 388 QFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLS 422
              NL  + L NN I    P  L + S L  + L+
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 22/186 (11%)

Query: 466 LDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGAL 525
            +L    +T ++     +  + I  +  + + I   +  +     +  L L  N  +   
Sbjct: 29  DNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 526 PLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLM 585
           PL  +NL  L +     +            +LK L   +   + + G +    +    L 
Sbjct: 85  PL--ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142

Query: 586 ILDLSNNKFTGNL---------------PISLGSLISLQSLHLRKNNLSGTIHSLKNCTA 630
              +++      L                + L  L  LQ+L+L KN++S  + +L     
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGLKN 201

Query: 631 LLTLDV 636
           L  L++
Sbjct: 202 LDVLEL 207

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 9/164 (5%)

Query: 528 ISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMIL 587
           I  +  EL  ++N +       +  R   L KL+    +   ++    + +    ++  L
Sbjct: 27  IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE---PNAFEGASHIQEL 83

Query: 588 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIP 646
            L  NK           L  L++L+L  N +S  +  S ++  +L +L++  N F  N  
Sbjct: 84  QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

Query: 647 TWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNL 690
                 + R     L         P     +  +QI DL  +  
Sbjct: 144 LAWFAEWLRK--KSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	938
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.3e-38  Score=340.41  Aligned_cols=293  Identities=27%  Similarity=0.374  Sum_probs=221.3

Q ss_pred             CCcHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEecCCCCCccCCccCCCCCCcccCc-
Q 036642           33 GCLESERRALLRFKQDLQDPSNRLASWIGYEDCCA--WAGVVCDNVT--GHIVELNLRNPFTYCDLSQSKANPRSMLVG-  107 (938)
Q Consensus        33 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~~~~~~~~~~~~~~g-  107 (938)
                      -|.++|++||++||+++.||. .+++|..++|||.  |+||+|+..+  +||+.++|++.               .+.| 
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~---------------~l~g~   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL---------------NLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC---------------CCSSC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC---------------CCCCC
Confidence            399999999999999998874 6899976689994  9999998644  48999999984               5555 


Q ss_pred             -cccCCccCCCCCCEEeCCC-CCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccc
Q 036642          108 -KVNPSLLDLKHLSYLDLSY-NDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWW  185 (938)
Q Consensus       108 -~l~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~  185 (938)
                       .+|++++++++|++|||++ |++++. +|..++++++|++|+|++|++.+..|..+..+.+|+++++++|.+....+..
T Consensus        66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          66 YPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             CCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchh
Confidence             6889999999999999987 788884 8999999999999999999999988988999999999999999888777777


Q ss_pred             cCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCC-cEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCC
Q 036642          186 LPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSL-VKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGL  264 (938)
Q Consensus       186 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L-~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  264 (938)
                      +.+++.|+++++++|.+++.  ++..+..+.++ +.+++++|++++..+..+..+..+ .+++..+...+.. +..+..+
T Consensus       145 l~~l~~L~~l~l~~n~l~~~--ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~-~~~~~~~  220 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDA-SVLFGSD  220 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECC-GGGCCTT
T ss_pred             hccCcccceeeccccccccc--cccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccc
Confidence            88888888888887777642  22344445444 667777777777666666665443 5666666666554 6666666


Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeec
Q 036642          265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML  344 (938)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  344 (938)
                      ++++.+++++|.+.+.+| .+..+++|++|++++|+++|.+|.+++++++|++|+|++|+++|.+|. ++++++|+.+++
T Consensus       221 ~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l  298 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY  298 (313)
T ss_dssp             SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGT
T ss_pred             cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHh
Confidence            677777777776665443 456666777777777777666676677777777777777776666653 455666666666


Q ss_pred             CCCc
Q 036642          345 SCVK  348 (938)
Q Consensus       345 ~~n~  348 (938)
                      ++|+
T Consensus       299 ~~N~  302 (313)
T d1ogqa_         299 ANNK  302 (313)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            6665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.1e-32  Score=296.92  Aligned_cols=257  Identities=30%  Similarity=0.519  Sum_probs=236.9

Q ss_pred             CCcceeeccCccCCC--ccchhhhcCCCCCEEEcCC-CcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcE
Q 036642          558 KKLQFLYLRGNFLQG--ELTDCWMNYQNLMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLT  633 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~  633 (938)
                      .+++.|++++|.++|  .+|..++++++|++|+|++ |+++|.+|..++++++|++|+|++|++.+.++ .+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468889999999987  4789999999999999987 89999999999999999999999999999888 8999999999


Q ss_pred             EECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCcc-Ceeeccccccccccchhhhcchhhhhcccccc
Q 036642          634 LDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFL-QIVDLADNNLSGEVPRCIHNLRAMVTLNSHAG  712 (938)
Q Consensus       634 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~  712 (938)
                      +++++|.+.+.+|.++. .++.++.+++++|++.+.+|..+..+..+ +.+++++|++++..|..+.++..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            99999999999999988 79999999999999999999999988876 88999999999999887765432         


Q ss_pred             chhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccC
Q 036642          713 KAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRI  792 (938)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~i  792 (938)
                                                                ..++++++...|.+|..++.+++|+.+++++|.+++.+
T Consensus       200 ------------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         200 ------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             ------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             ------------------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence                                                      36889999999999999999999999999999999876


Q ss_pred             CccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCCCcCCCcCCCCcCCC-CCCCCCCCCCC
Q 036642          793 PESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSSTQLQSFDASSYAGN-DLCGAPLPRNC  868 (938)
Q Consensus       793 p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c  868 (938)
                      | .++.+++|+.|||++|+++|.+|.+++++++|++|+|++|+|+|.||+.+.++.++..++.|| .+||.|++ .|
T Consensus       238 ~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             c-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            6 589999999999999999999999999999999999999999999999888999999999999 79999876 66

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.1e-25  Score=249.49  Aligned_cols=208  Identities=26%  Similarity=0.381  Sum_probs=144.4

Q ss_pred             CcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECCC
Q 036642          559 KLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVGE  638 (938)
Q Consensus       559 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~  638 (938)
                      .........|...  ....+..+++++.+++++|.+++..|  +..+++|++|++++|.++. ++.+..+++|+.|++++
T Consensus       176 ~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~  250 (384)
T d2omza2         176 TLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLAN  250 (384)
T ss_dssp             TCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCS
T ss_pred             ccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cchhhcccccchhcccc
Confidence            3334444444333  23345566777777777777765443  3455677777777777664 34566777777777777


Q ss_pred             CccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhh
Q 036642          639 NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQ  718 (938)
Q Consensus       639 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~  718 (938)
                      |++++..+  +. .+++|++|++++|++++..  .+..++.++.+++++|.+++.  ..+..++.               
T Consensus       251 n~l~~~~~--~~-~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~---------------  308 (384)
T d2omza2         251 NQISNLAP--LS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKN---------------  308 (384)
T ss_dssp             SCCCCCGG--GT-TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTT---------------
T ss_pred             CccCCCCc--cc-ccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcc---------------
Confidence            77765332  22 5677788888777777643  366777888888888877641  12322222               


Q ss_pred             hhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccc
Q 036642          719 FLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGA  798 (938)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~  798 (938)
                                                         ++.|++++|++++. + .+..+++|+.|++++|++++ +| .+++
T Consensus       309 -----------------------------------l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~  349 (384)
T d2omza2         309 -----------------------------------LTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLAN  349 (384)
T ss_dssp             -----------------------------------CSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred             -----------------------------------cCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcC
Confidence                                               36788999999864 3 37889999999999999984 44 6889


Q ss_pred             cCCCCEEECCCCcccccCCccccCCCCCCeEeCcCC
Q 036642          799 MRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNN  834 (938)
Q Consensus       799 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  834 (938)
                      +++|++||+++|++++..|  +.++++|++|++++|
T Consensus       350 l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999999999997655  888999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.6e-24  Score=240.14  Aligned_cols=191  Identities=24%  Similarity=0.266  Sum_probs=110.3

Q ss_pred             cCCCCCCcEEEccCcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEE
Q 036642          457 LHSQKHLNYLDLSYSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELD  536 (938)
Q Consensus       457 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~  536 (938)
                      +..+++++.+++++|.+++..|.   ...++|+.|++++|.++. ++.+..+++|+.+++++|.+++..           
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~-----------  257 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLA-----------  257 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCG-----------
T ss_pred             cccccccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCC-----------
Confidence            44555566666666665544332   234456666666665543 223344444444444444443321           


Q ss_pred             ccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccc
Q 036642          537 FSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN  616 (938)
Q Consensus       537 ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  616 (938)
                                      .+..+++|++|++++|++++..+  +..++.++.+++++|.+++.  ..+..+++++.|++++|
T Consensus       258 ----------------~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n  317 (384)
T d2omza2         258 ----------------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFN  317 (384)
T ss_dssp             ----------------GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSS
T ss_pred             ----------------cccccccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCC
Confidence                            13345666666666666664332  55566666666666666642  23556666777777777


Q ss_pred             cccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeecccc
Q 036642          617 NLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADN  688 (938)
Q Consensus       617 ~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  688 (938)
                      ++++.. .+..+++|++|++++|++++ ++ .+. .+++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       318 ~l~~l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~-~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         318 NISDIS-PVSSLTKLQRLFFANNKVSD-VS-SLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSCCG-GGGGCTTCCEEECCSSCCCC-CG-GGG-GCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCc-ccccCCCCCEEECCCCCCCC-Ch-hHc-CCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            666543 35666677777777776654 33 343 57777777777777776543  677777777777776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=6.4e-23  Score=218.99  Aligned_cols=229  Identities=23%  Similarity=0.197  Sum_probs=150.0

Q ss_pred             cccCCccCCCCCCEEeCCCCCCCCCccc-ccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCcccc
Q 036642          108 KVNPSLLDLKHLSYLDLSYNDFQGVQIP-RFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWL  186 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~  186 (938)
                      ++|+.+.  +.+++|||++|+|+.  +| ..|.++++|++|++++|.+....|..|.++++|++|++++|++....... 
T Consensus        24 ~lP~~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~-   98 (305)
T d1xkua_          24 KVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-   98 (305)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-
T ss_pred             ccCCCCC--CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch-
Confidence            5666664  589999999999985  55 46889999999999999999888888999999999999999887665432 


Q ss_pred             CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCC--CCcccccCCCCCCEEECCCCCCCCccCcccccCC
Q 036642          187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHH--LPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGL  264 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  264 (938)
                        ...++.|+++.|.+..+..  ..+.....++.+....|....  .....+..+++|+++++++|.+..  ++..  .+
T Consensus        99 --~~~l~~L~~~~n~l~~l~~--~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~~--~~  170 (305)
T d1xkua_          99 --PKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IPQG--LP  170 (305)
T ss_dssp             --CTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CCSS--CC
T ss_pred             --hhhhhhhhccccchhhhhh--hhhhccccccccccccccccccCCCccccccccccCccccccCCccc--cCcc--cC
Confidence              3466777777777766543  344555666666666654332  223455566666666666666543  1222  24


Q ss_pred             CCCCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeec
Q 036642          265 IQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVML  344 (938)
Q Consensus       265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  344 (938)
                      ++|++|++++|...+..+..+.+++.+++|++++|.+++..+.++..+++|++|+|++|+++. +|..+..+++|+.|++
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL  249 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEEC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEEC
Confidence            556666666666665555566666666666666666665555556666666666666666553 3445555555555555


Q ss_pred             CCCcCc
Q 036642          345 SCVKLS  350 (938)
Q Consensus       345 ~~n~l~  350 (938)
                      ++|+++
T Consensus       250 s~N~i~  255 (305)
T d1xkua_         250 HNNNIS  255 (305)
T ss_dssp             CSSCCC
T ss_pred             CCCccC
Confidence            555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.2e-22  Score=216.75  Aligned_cols=274  Identities=20%  Similarity=0.223  Sum_probs=174.5

Q ss_pred             CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeC
Q 036642          118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDL  197 (938)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  197 (938)
                      ..+.+|=+++.++  ++|..+.  +++++|+|++|+++...+.+|.++++|++|++++|.+....+..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~--~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC--ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            5678888888888  5787663  68999999999999766678999999999999999999888888999999999999


Q ss_pred             CCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCcc-CcccccCCCCCCEEEccCCc
Q 036642          198 SYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSF-VPNWVFGLIQLVFLDLRRNN  276 (938)
Q Consensus       198 s~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~  276 (938)
                      ++|+++.++.     ...+.++.|++.+|.+..+.+..+.....++.++...|...... .+..+..+++|+++++++|.
T Consensus        87 ~~n~l~~l~~-----~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          87 SKNQLKELPE-----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CSSCCSBCCS-----SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             cCCccCcCcc-----chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            9998887643     23457788888888888877777777777777777776543211 12234444555555555554


Q ss_pred             ccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCCCcCccchhhH
Q 036642          277 FQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSCVKLSQEISEI  356 (938)
Q Consensus       277 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  356 (938)
                      +.. +|..                          .+++|++|++++|...+..+..+.+++.++.|++++|.+.+     
T Consensus       162 l~~-l~~~--------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~-----  209 (305)
T d1xkua_         162 ITT-IPQG--------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----  209 (305)
T ss_dssp             CCS-CCSS--------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-----
T ss_pred             ccc-cCcc--------------------------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccc-----
Confidence            442 2221                          12344444444444444444444444433333333333332     


Q ss_pred             HHhhhcccccCccEEEccCCcCccccccccCCCCCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCc
Q 036642          357 FDIFSGCVSSGLEILVLRGSSVSGHLTYKLGQFKNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPP  436 (938)
Q Consensus       357 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  436 (938)
                                              ..+..+..+++|++|+|++|+++ .+|.++..+++|++|+|++|+|+.++...+. 
T Consensus       210 ------------------------~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~-  263 (305)
T d1xkua_         210 ------------------------VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC-  263 (305)
T ss_dssp             ------------------------ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS-
T ss_pred             ------------------------cccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhcc-
Confidence                                    22233445566666666666665 3455666777777777777777665443221 


Q ss_pred             cccceeecccccCCCCCCcccCCCCCCcEEEccCcccc
Q 036642          437 FQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLSYSGIT  474 (938)
Q Consensus       437 ~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~  474 (938)
                                      .+.......+|+.|++++|.+.
T Consensus       264 ----------------~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         264 ----------------PPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ----------------CSSCCTTSCCCSEEECCSSSSC
T ss_pred             ----------------CcchhcccCCCCEEECCCCcCc
Confidence                            1222334456666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=220.12  Aligned_cols=228  Identities=19%  Similarity=0.154  Sum_probs=172.2

Q ss_pred             eeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCcc
Q 036642          563 LYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEF  641 (938)
Q Consensus       563 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l  641 (938)
                      ++.++++++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|++.+..+ .+.+++.++.++...+..
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            455555555 4454443  457777777777776666667777777777777777776666 667777777777665444


Q ss_pred             CCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhh
Q 036642          642 VENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLL  721 (938)
Q Consensus       642 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~  721 (938)
                      ...++...+.++++|++|++++|.+....+..+...+.|+.+++++|.+++..+..|..+..|                 
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-----------------  155 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-----------------  155 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch-----------------
Confidence            444544444467888888888888877777777778888888888888886555566555544                 


Q ss_pred             ccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCC
Q 036642          722 YASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRS  801 (938)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~  801 (938)
                                                       +.|++++|++++..|..+.++++|+.+++++|++++..|..|+.+++
T Consensus       156 ---------------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         156 ---------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             ---------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ---------------------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence                                             67888888888777778888899999999999998888888999999


Q ss_pred             CCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCCC
Q 036642          802 LESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPSS  843 (938)
Q Consensus       802 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  843 (938)
                      |++||+++|++.+..|..++.+++|++|++++|++.|.++..
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             cccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            999999999998888888888889999999999998887753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.1e-22  Score=210.00  Aligned_cols=213  Identities=23%  Similarity=0.204  Sum_probs=116.0

Q ss_pred             cccCCccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECC-CCcccccCcccc
Q 036642          108 KVNPSLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLS-WNFLYVENLWWL  186 (938)
Q Consensus       108 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls-~n~i~~~~~~~~  186 (938)
                      ++|..+.  +.+++|+|++|+|+.+ .+..+.++++|++|++++|.+.+..+..+.++..+++++.. .+.+....+..|
T Consensus        25 ~iP~~ip--~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  101 (284)
T d1ozna_          25 AVPVGIP--AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (284)
T ss_dssp             SCCTTCC--TTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             ccCCCCC--CCCCEEECcCCcCCCC-CHHHhhccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            5555443  3566777777776632 22356666667777777766666666666666666666554 344555555555


Q ss_pred             CCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCC
Q 036642          187 PGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQ  266 (938)
Q Consensus       187 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  266 (938)
                      .++++|++|++++|.+..+..  ..+...++|+.+++++|.++++++..|..++                         +
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~-------------------------~  154 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLG-------------------------N  154 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------T
T ss_pred             cccccCCEEecCCcccccccc--cccchhcccchhhhccccccccChhHhcccc-------------------------c
Confidence            555555555555555544322  2334444455555555555554444444444                         4


Q ss_pred             CCEEEccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecCC
Q 036642          267 LVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLSC  346 (938)
Q Consensus       267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  346 (938)
                      |++|++++|++++..+..+.++++|+++++++|++++..|..|..+++|++|++++|.+.+..+..|+.+++|+.|++++
T Consensus       155 L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            45555555544444444455555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcCc
Q 036642          347 VKLS  350 (938)
Q Consensus       347 n~l~  350 (938)
                      |.+.
T Consensus       235 N~l~  238 (284)
T d1ozna_         235 NPWV  238 (284)
T ss_dssp             SCEE
T ss_pred             CCCC
Confidence            5544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-21  Score=203.84  Aligned_cols=204  Identities=21%  Similarity=0.192  Sum_probs=136.5

Q ss_pred             CCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEEC
Q 036642          557 LKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDV  636 (938)
Q Consensus       557 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L  636 (938)
                      ...+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. ++.+..+++|++|++
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccccccccccccccc
Confidence            344555666666666 3454332  356666666666665544556666666666666666553 233344445555555


Q ss_pred             CCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhh
Q 036642          637 GENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQ  716 (938)
Q Consensus       637 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~  716 (938)
                      ++|+                         +++ .+..+..+++|+.|++++|.+.+..+..+..+..+            
T Consensus        85 s~N~-------------------------l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l------------  126 (266)
T d1p9ag_          85 SHNQ-------------------------LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL------------  126 (266)
T ss_dssp             CSSC-------------------------CSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC------------
T ss_pred             cccc-------------------------ccc-cccccccccccccccccccccceeecccccccccc------------
Confidence            5554                         443 23445556666666666666664444444333333            


Q ss_pred             hhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccc
Q 036642          717 YQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESI  796 (938)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~  796 (938)
                                                            +.|++++|.+++..+..+..++.|+.|++++|++++..|+.|
T Consensus       127 --------------------------------------~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~  168 (266)
T d1p9ag_         127 --------------------------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL  168 (266)
T ss_dssp             --------------------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred             --------------------------------------ccccccccccceeccccccccccchhcccccccccccCcccc
Confidence                                                  567777787776556667778889999999999998888888


Q ss_pred             cccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCC
Q 036642          797 GAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIP  841 (938)
Q Consensus       797 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  841 (938)
                      +.+++|++|||++|+|+ .+|.++..+++|++|+|++|++.|.+-
T Consensus       169 ~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            99999999999999998 788888889999999999999988654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.6e-21  Score=201.35  Aligned_cols=201  Identities=22%  Similarity=0.207  Sum_probs=151.2

Q ss_pred             CCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCc
Q 036642          530 SNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQ  609 (938)
Q Consensus       530 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  609 (938)
                      ..+.+++.+++.++. +|..+      .+++++|+|++|++++..+..|.++++|++|++++|+++. +| .++.+++|+
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~l------p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDL------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCC------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             CCCeEEEccCCCCCe-eCcCc------CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            466778999999985 45322      2579999999999998777889999999999999999984 44 357899999


Q ss_pred             EEEcccccccccccccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccc
Q 036642          610 SLHLRKNNLSGTIHSLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNN  689 (938)
Q Consensus       610 ~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  689 (938)
                      +|+|++|++++..+.+.++++|+.|++++|.+.+                         ..+..+..+.+++.|++++|.
T Consensus        81 ~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~-------------------------~~~~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_          81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-------------------------LPLGALRGLGELQELYLKGNE  135 (266)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC-------------------------CCSSTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccccccccccccccccccccccccce-------------------------eeccccccccccccccccccc
Confidence            9999999998765567777777777777666554                         233334445555566666666


Q ss_pred             cccccchhhhcchhhhhccccccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCc
Q 036642          690 LSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIP  769 (938)
Q Consensus       690 l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip  769 (938)
                      +++..+..+..++.+                                                  +.+++++|++++..|
T Consensus       136 l~~l~~~~~~~l~~l--------------------------------------------------~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_         136 LKTLPPGLLTPTPKL--------------------------------------------------EKLSLANNNLTELPA  165 (266)
T ss_dssp             CCCCCTTTTTTCTTC--------------------------------------------------CEEECTTSCCSCCCT
T ss_pred             cceeccccccccccc--------------------------------------------------hhcccccccccccCc
Confidence            554434334333333                                                  567777777776666


Q ss_pred             hhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCccccc
Q 036642          770 LEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGE  815 (938)
Q Consensus       770 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~  815 (938)
                      ..++.+++|+.|+|++|+|+ .+|+.+..+++|+.|+|++|++.+.
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            77888888999999999988 7888888889999999999988753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1e-16  Score=174.01  Aligned_cols=135  Identities=20%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCC-CCCCEEe
Q 036642          118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGL-SFLKDLD  196 (938)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~  196 (938)
                      ++++|||+++.++  .+|+.   .++|++|++++|+++ .+|..+   .+|++|++++|++....     .+ +.|++|+
T Consensus        39 ~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~-----~lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALS-----DLPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCC-----SCCTTCCEEE
T ss_pred             CCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhh-----hhcccccccc
Confidence            5777888888877  46653   467788888888877 556543   46677777777665332     11 2355555


Q ss_pred             CCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCc
Q 036642          197 LSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNN  276 (938)
Q Consensus       197 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  276 (938)
                      +++|.+..++.    +..+++|++|+++++.+...+.    ....+..+.+..+....   ...+..++.++.++++.|.
T Consensus       105 L~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         105 VSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             CCSSCCSSCCC----CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSC
T ss_pred             ccccccccccc----hhhhccceeecccccccccccc----ccccccchhhccccccc---cccccccccceeccccccc
Confidence            55555544432    2344455555555554443322    12334444444333322   2233344444444444444


Q ss_pred             c
Q 036642          277 F  277 (938)
Q Consensus       277 l  277 (938)
                      .
T Consensus       174 ~  174 (353)
T d1jl5a_         174 L  174 (353)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-20  Score=213.53  Aligned_cols=111  Identities=19%  Similarity=0.214  Sum_probs=54.8

Q ss_pred             CCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccC----CCCccccCCCCCCEEECcCCcCCCccchhh----h-cC
Q 036642          242 LTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQG----PIPEGLQNLTSLKHLLLDSNRFNSSIPNWL----Y-RF  312 (938)
Q Consensus       242 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~-~l  312 (938)
                      |++||+++|++++..+.+.+..++++++|+|++|.++.    .+...+..+++|++|+|++|.++......+    . ..
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~   83 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS   83 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCC
Confidence            44555555555443223334445555555555555442    223334555566666666665542111111    1 12


Q ss_pred             CCCCEEEccCCcCCch----hhHhhhccCCCCeeecCCCcCccc
Q 036642          313 NRLESLGVSNNSLQGR----VIRSMASLCNLRSVMLSCVKLSQE  352 (938)
Q Consensus       313 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~  352 (938)
                      .+|++|++++|++++.    ++..+..+++|++|++++|.+...
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             CCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence            3566666666666543    233445566666666666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=5.5e-17  Score=176.25  Aligned_cols=304  Identities=23%  Similarity=0.300  Sum_probs=150.7

Q ss_pred             CCccEEEccCCeecccccccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccCCCCCCcEEEcc
Q 036642          390 KNLYYLDLSNNSIVGPIPFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLHSQKHLNYLDLS  469 (938)
Q Consensus       390 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls  469 (938)
                      .++++||++++.++ .+|+.   .++|++|++++|+|+.+|..                           ..+|++|+++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp~~---------------------------~~~L~~L~l~   86 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPEL---------------------------PQSLKSLLVD   86 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCCCC---------------------------CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCcccccc---------------------------hhhhhhhhhh
Confidence            35777788877776 35542   45677777777777765422                           2345566666


Q ss_pred             CcccccccchhHhhcCcCccEEecccccccccCCCccccccCceeecCCccCccCCCCCCCCCcEEEccCCccccccchh
Q 036642          470 YSGITGSIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHF  549 (938)
Q Consensus       470 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~  549 (938)
                      +|+++ .++..    .+.|++|++++|.+.. +|.+..+++|+.|++++|.+.... .....+..+.+..+....     
T Consensus        87 ~n~l~-~l~~l----p~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~~~~~~~~-----  154 (353)
T d1jl5a_          87 NNNLK-ALSDL----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKLP-DLPPSLEFIAAGNNQLEE-----  154 (353)
T ss_dssp             SSCCS-CCCSC----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSS-----
T ss_pred             hcccc-hhhhh----cccccccccccccccc-ccchhhhccceeeccccccccccc-cccccccchhhccccccc-----
Confidence            66555 22221    2346667777666653 344455666666666666655322 223344444444333221     


Q ss_pred             hhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCc
Q 036642          550 ICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCT  629 (938)
Q Consensus       550 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~  629 (938)
                                               +..+..++.++.+++++|.... .+..   ....+.+...++.+. .++.+..++
T Consensus       155 -------------------------~~~l~~l~~l~~L~l~~n~~~~-~~~~---~~~~~~l~~~~~~~~-~~~~~~~l~  204 (353)
T d1jl5a_         155 -------------------------LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPELQNLP  204 (353)
T ss_dssp             -------------------------CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCCCTTCT
T ss_pred             -------------------------cccccccccceecccccccccc-cccc---ccccccccccccccc-ccccccccc
Confidence                                     1223334444455555444442 1111   112233333333332 233444555


Q ss_pred             CCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccc
Q 036642          630 ALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNS  709 (938)
Q Consensus       630 ~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~  709 (938)
                      .|+.+++++|.... +|.    ...++..+.+.++++.... .   ....+...++..+.+.+        +..+.    
T Consensus       205 ~L~~l~l~~n~~~~-~~~----~~~~l~~~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~--------l~~l~----  263 (353)
T d1jl5a_         205 FLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSG--------LSELP----  263 (353)
T ss_dssp             TCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSE--------ESCCC----
T ss_pred             cccccccccccccc-ccc----ccccccccccccccccccc-c---ccccccccccccccccc--------ccccc----
Confidence            56666666555432 222    2345556666666554321 1   12344455555444431        11110    


Q ss_pred             cccchhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCc
Q 036642          710 HAGKAIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFT  789 (938)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  789 (938)
                                                                ......+++.+.+.+ ++   ..+++|++|+|++|+++
T Consensus       264 ------------------------------------------~~~~~~~~~~~~~~~-~~---~~~~~L~~L~Ls~N~l~  297 (353)
T d1jl5a_         264 ------------------------------------------PNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLI  297 (353)
T ss_dssp             ------------------------------------------TTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCS
T ss_pred             ------------------------------------------chhcccccccCcccc-cc---ccCCCCCEEECCCCccC
Confidence                                                      001233444454442 11   23456667777777766


Q ss_pred             ccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcCCcccccCCC
Q 036642          790 GRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSNNNLTGKIPS  842 (938)
Q Consensus       790 ~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  842 (938)
                       .+|+.   +++|+.|+|++|+|+ .+|..   +++|++|++++|+++ .+|.
T Consensus       298 -~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         298 -ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             -CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             -ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence             55543   356667777777766 45543   345667777777766 4553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-19  Score=202.06  Aligned_cols=239  Identities=21%  Similarity=0.121  Sum_probs=136.9

Q ss_pred             CCCCcEEEccCcccccccc----hhHhhcCcCccEEecccccccccC-----CCccccccCceeecCCccCcc-------
Q 036642          460 QKHLNYLDLSYSGITGSIP----NIFWSSASQIYVLDLSFNQIHGQI-----PNLTNAAQLEVLSLGSNSFSG-------  523 (938)
Q Consensus       460 l~~L~~L~Ls~n~l~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~-----~~l~~~~~L~~L~L~~n~l~~-------  523 (938)
                      ...++.++++++.......    ..+.........+++..+.+....     ..+.....++.+++.+|.+..       
T Consensus       168 ~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~  247 (460)
T d1z7xw1         168 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC  247 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhh
Confidence            3455566666555432211    111122223445555555443211     012334556666666665431       


Q ss_pred             -CCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhh-----hcCCCCCEEEcCCCccccc
Q 036642          524 -ALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCW-----MNYQNLMILDLSNNKFTGN  597 (938)
Q Consensus       524 -~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~  597 (938)
                       ........++.+++++|.+...........+...+.++.+++++|.++......+     .....|+.+++++|.++..
T Consensus       248 ~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~  327 (460)
T d1z7xw1         248 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  327 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhh
Confidence             1122245677778877777655444444555667778888888887764322222     2345788888888877644


Q ss_pred             CCcc----cCCCCCCcEEEccccccccc----cc-cc-ccCcCCcEEECCCCccCCC----CChhHhhhcCcccEEeeCC
Q 036642          598 LPIS----LGSLISLQSLHLRKNNLSGT----IH-SL-KNCTALLTLDVGENEFVEN----IPTWIGERFSRMVVLILRS  663 (938)
Q Consensus       598 ~p~~----~~~l~~L~~L~L~~n~l~~~----~~-~l-~~l~~L~~L~Ls~N~l~~~----~p~~~~~~l~~L~~L~L~~  663 (938)
                      ....    +...++|++|+|++|++++.    +. .+ ...+.|++|+|++|+++..    ++..+. .+++|++|++++
T Consensus       328 ~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~  406 (460)
T d1z7xw1         328 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSN  406 (460)
T ss_dssp             GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCS
T ss_pred             hhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh-cCCCCCEEECCC
Confidence            3222    33456788888888887642    22 23 2456788888888887643    233333 568888888888


Q ss_pred             CcccccCCccc----c-CCCccCeeeccccccccccchhhh
Q 036642          664 NKFHSLLPKGL----C-DLAFLQIVDLADNNLSGEVPRCIH  699 (938)
Q Consensus       664 n~l~~~~~~~l----~-~l~~L~~L~Ls~N~l~~~~p~~l~  699 (938)
                      |+++......+    . +.+.|+.|++.+|.+....+..+.
T Consensus       407 N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~  447 (460)
T d1z7xw1         407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ  447 (460)
T ss_dssp             SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHH
Confidence            88875433222    2 344689999999988765555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.3e-17  Score=163.51  Aligned_cols=187  Identities=26%  Similarity=0.266  Sum_probs=100.8

Q ss_pred             CCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCCCCCCcchhhhhCCCCCCc
Q 036642          140 SMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVNLSKASDWLRVTNTLPSLV  219 (938)
Q Consensus       140 ~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~  219 (938)
                      .+.+|++|++.+|.++. + +.+.++++|++|++++|++....  .+..+++|+.+++++|.++.++    .+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i~----~l~~l~~L~  110 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVS----AIAGLQSIK  110 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCCG----GGTTCTTCC
T ss_pred             HcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccccc----ccccccccc
Confidence            34455555555555542 2 23455555555555555544322  2445555555555555544432    244555555


Q ss_pred             EEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCC
Q 036642          220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN  299 (938)
Q Consensus       220 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  299 (938)
                      .++++++...+..  .+...+.++.+.++.+.+..   ...+...++|++|++++|.+.+.  ..++++++|++|++++|
T Consensus       111 ~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN  183 (227)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC---CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred             ccccccccccccc--hhccccchhhhhchhhhhch---hhhhccccccccccccccccccc--hhhcccccceecccCCC
Confidence            6665555554432  34455566666666665544   23345556666666666665532  22566666666666666


Q ss_pred             cCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCeeecC
Q 036642          300 RFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSVMLS  345 (938)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  345 (938)
                      ++++. + .+.++++|++|++++|++++..+  ++++++|+.|+++
T Consensus       184 ~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         184 KISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             ccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            66542 2 25666666777776666664432  5666666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.7e-17  Score=163.30  Aligned_cols=191  Identities=24%  Similarity=0.255  Sum_probs=163.0

Q ss_pred             CccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCC
Q 036642          112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF  191 (938)
Q Consensus       112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~  191 (938)
                      .+.++++|++|++++|.++.  ++ .+.++++|++|++++|.+++..|  +.++++|+++++++|.++..  ..+.++++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~  108 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQS  108 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred             CHHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccccccc
Confidence            34678899999999999984  53 58899999999999999986544  89999999999999988754  46889999


Q ss_pred             CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEE
Q 036642          192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLD  271 (938)
Q Consensus       192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  271 (938)
                      |+.++++++......    .+...+.++.+.++.+.+....  .+.++++|++|++++|.+.+   ...+.++++|++|+
T Consensus       109 L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~  179 (227)
T d1h6ua2         109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD---LTPLANLSKLTTLK  179 (227)
T ss_dssp             CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC---CGGGTTCTTCCEEE
T ss_pred             ccccccccccccccc----hhccccchhhhhchhhhhchhh--hhcccccccccccccccccc---chhhcccccceecc
Confidence            999999999887753    4567889999999999887654  47788999999999999876   44588999999999


Q ss_pred             ccCCcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccC
Q 036642          272 LRRNNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSN  322 (938)
Q Consensus       272 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  322 (938)
                      +++|++++ ++ .++.+++|++|++++|++++. + .+.++++|++|++++
T Consensus       180 Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         180 ADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            99999985 33 488999999999999999864 3 388999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.1e-16  Score=163.62  Aligned_cols=219  Identities=13%  Similarity=0.107  Sum_probs=121.5

Q ss_pred             ceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEccccccccccc--ccccCcCCcEEECCC
Q 036642          561 QFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIH--SLKNCTALLTLDVGE  638 (938)
Q Consensus       561 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~  638 (938)
                      +.++.++..++ .+|+.+.  +++++|++++|+++...+..|.++++|++|++++|.+...++  .+.+++.++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            44555555555 3443332  356666666666664444456666666666666666655443  455666666665543


Q ss_pred             -CccCCCCChhHhhhcCcccEEeeCCCcccccCCc-cccCCCccCeeeccccccccccchhhhcchhhhhccccccchhh
Q 036642          639 -NEFVENIPTWIGERFSRMVVLILRSNKFHSLLPK-GLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQ  716 (938)
Q Consensus       639 -N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~  716 (938)
                       |++....+..+ ..+++|+.+++++|++....+. .+..++.+..+...++.+....+..+..+.              
T Consensus        88 ~n~l~~~~~~~~-~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~--------------  152 (242)
T d1xwdc1          88 ANNLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  152 (242)
T ss_dssp             CTTCCEECTTSE-ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             cccccccccccc-cccccccccccchhhhccccccccccccccccccccccccccccccccccccc--------------
Confidence             33333222222 2456666666666655443221 122333444444444444322222222111              


Q ss_pred             hhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEE-eCcCccCcccCCcc
Q 036642          717 YQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSF-NLSNNFFTGRIPES  795 (938)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L-~Ls~N~l~~~ip~~  795 (938)
                                                         ..++.+++++|+++ .++.......+++.+ ++++|+++...+..
T Consensus       153 -----------------------------------~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~  196 (242)
T d1xwdc1         153 -----------------------------------FESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPNDV  196 (242)
T ss_dssp             -----------------------------------SSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCTTT
T ss_pred             -----------------------------------ccceeeeccccccc-ccccccccchhhhccccccccccccccHHH
Confidence                                               12367788888887 455555555555444 56777887444556


Q ss_pred             ccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642          796 IGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN  833 (938)
Q Consensus       796 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  833 (938)
                      |.++++|++|||++|+++...+..|.+++.|+++++.+
T Consensus       197 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            78888888888888888855455677777776666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1e-15  Score=150.70  Aligned_cols=162  Identities=27%  Similarity=0.368  Sum_probs=90.0

Q ss_pred             CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642          115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD  194 (938)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  194 (938)
                      .+.++++|++++|.++.  ++ .++.+++|++|++++|++++..|  ++++++|++|++++|.+                
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~----------------   96 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI----------------   96 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC----------------
T ss_pred             HhcCCCEEECCCCCCCC--cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccc----------------
Confidence            34455555555555552  21 24455555555555555553322  55555555555555544                


Q ss_pred             EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642          195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR  274 (938)
Q Consensus       195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  274 (938)
                              ..++    .+.++++|+.|++++|.+....  .+.++++|+.|++++|++..   ...+..+++|++|++.+
T Consensus        97 --------~~~~----~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~---~~~l~~~~~L~~L~l~~  159 (199)
T d2omxa2          97 --------ADIT----PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFSS  159 (199)
T ss_dssp             --------CCCG----GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCS
T ss_pred             --------cccc----cccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcc---ccccccccccccccccc
Confidence                    3332    2445555555555555554432  35556666666666666553   33456666666666666


Q ss_pred             CcccCCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEE
Q 036642          275 NNFQGPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESL  318 (938)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  318 (938)
                      |++++.  +.++++++|++|++++|++++ ++ .++++++|++|
T Consensus       160 n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         160 NQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             SCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            666643  236667777777777777664 22 46667777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.4e-16  Score=154.11  Aligned_cols=180  Identities=20%  Similarity=0.189  Sum_probs=97.5

Q ss_pred             EeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCCCC
Q 036642          122 LDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSYVN  201 (938)
Q Consensus       122 L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  201 (938)
                      .++..+.+++. ++.  ..+.+|++|++++|.++...  .+..+++|++|++++|+++...  .++.+++|+.|++++|+
T Consensus        29 ~~l~~~~~~~~-~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          29 DNLKKKSVTDA-VTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHTTCSCTTSE-ECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHhCcCccCCc-cCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence            34555555432 221  23455666666666665332  3556666666666666555432  24455555555555555


Q ss_pred             CCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCC
Q 036642          202 LSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPI  281 (938)
Q Consensus       202 l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  281 (938)
                      ++.++    .+..+++|+.|++++|.+..+.  .+.++++++.+++++|.+.+   +..+..+++|+++++++|++++. 
T Consensus       102 i~~l~----~l~~l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~---~~~~~~l~~L~~l~l~~n~l~~i-  171 (210)
T d1h6ta2         102 VKDLS----SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISDI-  171 (210)
T ss_dssp             CCCGG----GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCC-
T ss_pred             ccccc----cccccccccccccccccccccc--cccccccccccccccccccc---ccccccccccccccccccccccc-
Confidence            55432    3455566666666666555432  45556666666666666654   33455556666666666665532 


Q ss_pred             CccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEcc
Q 036642          282 PEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVS  321 (938)
Q Consensus       282 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  321 (938)
                      + .+.++++|++|++++|.+++ +| .+..+++|++|+|+
T Consensus       172 ~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         172 V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            2 25556666666666666553 33 35555566666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.2e-15  Score=150.31  Aligned_cols=180  Identities=25%  Similarity=0.310  Sum_probs=136.5

Q ss_pred             CCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCC
Q 036642          119 LSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLS  198 (938)
Q Consensus       119 L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls  198 (938)
                      +..++++.+.+++. +  ....++++++|++++|.++..  +.++.+++|++|++++|+                     
T Consensus        20 ~i~~~l~~~~~~~~-~--~~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~---------------------   73 (199)
T d2omxa2          20 KMKTVLGKTNVTDT-V--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ---------------------   73 (199)
T ss_dssp             HHHHHTTCSSTTSE-E--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC---------------------
T ss_pred             HHHHHhCCCCCCCc-c--CHHHhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccc---------------------
Confidence            33455666666642 2  123566777777777776632  235555555555555554                     


Q ss_pred             CCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCccc
Q 036642          199 YVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQ  278 (938)
Q Consensus       199 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  278 (938)
                         ++.++    .+.++++|++|++++|.+..++  .++++++|+.|+++++.+..   ...+..+++|+.|++++|++.
T Consensus        74 ---l~~~~----~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~n~l~  141 (199)
T d2omxa2          74 ---LTDIT----PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTIS  141 (199)
T ss_dssp             ---CCCCG----GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSSCCC
T ss_pred             ---ccCcc----cccCCccccccccccccccccc--cccccccccccccccccccc---ccccchhhhhHHhhhhhhhhc
Confidence               44432    3678899999999999998876  48899999999999998876   456888999999999999987


Q ss_pred             CCCCccccCCCCCCEEECcCCcCCCccchhhhcCCCCCEEEccCCcCCchhhHhhhccCCCCee
Q 036642          279 GPIPEGLQNLTSLKHLLLDSNRFNSSIPNWLYRFNRLESLGVSNNSLQGRVIRSMASLCNLRSV  342 (938)
Q Consensus       279 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  342 (938)
                      . + +.+..+++|++|++.+|++++. + .++++++|++|++++|++++.  +.++++++|+.|
T Consensus       142 ~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         142 D-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             C-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             c-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            4 3 4588999999999999999864 3 488999999999999999864  358889999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.1e-15  Score=151.70  Aligned_cols=166  Identities=27%  Similarity=0.272  Sum_probs=140.3

Q ss_pred             CCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCE
Q 036642          115 DLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKD  194 (938)
Q Consensus       115 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  194 (938)
                      .+..|++|++++|.++..  + .+..+++|++|++++|++++..  .++++++|++|++++|+++..  ..+.++++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--ccccccccccc
Confidence            467899999999999853  3 4788999999999999998643  378999999999999998764  35888999999


Q ss_pred             EeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccC
Q 036642          195 LDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRR  274 (938)
Q Consensus       195 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  274 (938)
                      |++++|.+..++    .+..+++++.+++++|.++...  .+..+++|+++++++|++.+   ...+.++++|++|++++
T Consensus       117 L~l~~~~~~~~~----~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~---i~~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         117 LSLEHNGISDIN----GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSK  187 (210)
T ss_dssp             EECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCC---CGGGTTCTTCCEEECCS
T ss_pred             cccccccccccc----cccccccccccccccccccccc--cccccccccccccccccccc---cccccCCCCCCEEECCC
Confidence            999999887753    4667899999999999998754  57789999999999999986   33488999999999999


Q ss_pred             CcccCCCCccccCCCCCCEEECcC
Q 036642          275 NNFQGPIPEGLQNLTSLKHLLLDS  298 (938)
Q Consensus       275 n~l~~~~p~~l~~l~~L~~L~L~~  298 (938)
                      |.++. ++ .+.++++|++|++++
T Consensus       188 N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         188 NHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCC-Ch-hhcCCCCCCEEEccC
Confidence            99984 44 589999999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.6e-16  Score=159.76  Aligned_cols=201  Identities=13%  Similarity=0.128  Sum_probs=135.5

Q ss_pred             CCcceeeccCccCCCccchhhhcCCCCCEEEcCCCcccccC-CcccCCCCCCcEEEccc-cccccccc-ccccCcCCcEE
Q 036642          558 KKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNNKFTGNL-PISLGSLISLQSLHLRK-NNLSGTIH-SLKNCTALLTL  634 (938)
Q Consensus       558 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~~-~l~~l~~L~~L  634 (938)
                      +++++|++++|+++...+..|.++++|++|++++|.+.+.+ +..|..++.++++.+.. |++....+ .+.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            35667777777776544556777777777777777766543 34566777777777654 45655555 67777777777


Q ss_pred             ECCCCccCCCCChhHhhhcCcccEEeeCCCcccccCCccccCCC-ccCeeeccccccccccchhhhcchhhhhccccccc
Q 036642          635 DVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGK  713 (938)
Q Consensus       635 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~  713 (938)
                      ++++|.+...-+......+..+..+...++++....+..+..++ .++.+++++|+++. ++....+...+         
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l---------  178 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQL---------  178 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCE---------
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhh---------
Confidence            77777765533333222456666677777777776667777664 78889999999984 44333222222         


Q ss_pred             hhhhhhhhccCCCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCch-hccCccCCCEEeCcCccCcccC
Q 036642          714 AIQYQFLLYASRAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPL-EVTNLKALQSFNLSNNFFTGRI  792 (938)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~~~i  792 (938)
                                                              .+.+++++|+++ .+|. .|.++++|+.|+|++|+++...
T Consensus       179 ----------------------------------------~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         179 ----------------------------------------DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             ----------------------------------------EEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             ----------------------------------------hccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccC
Confidence                                                    134567888898 4654 5789999999999999999555


Q ss_pred             CccccccCCCCEEECCC
Q 036642          793 PESIGAMRSLESIDFSL  809 (938)
Q Consensus       793 p~~~~~l~~L~~LdLs~  809 (938)
                      +..|.+++.|+.+++++
T Consensus       218 ~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         218 SYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SSSCTTCCEEESSSEES
T ss_pred             HHHHcCCcccccCcCCC
Confidence            55677777777776644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=9.9e-17  Score=157.12  Aligned_cols=60  Identities=20%  Similarity=0.309  Sum_probs=30.9

Q ss_pred             eEEEeecCccCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccc
Q 036642          755 RIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSG  814 (938)
Q Consensus       755 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~  814 (938)
                      +.|+|++|++++..|..|.++++|+.|+|++|+|++..|++|..+++|++|+|++|++.+
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            344444555544344445555555555555555555445555555555555555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=7.4e-16  Score=150.80  Aligned_cols=173  Identities=19%  Similarity=0.140  Sum_probs=132.3

Q ss_pred             ceeecCCccCccCCCCCCCCCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCC
Q 036642          512 EVLSLGSNSFSGALPLISSNLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSN  591 (938)
Q Consensus       512 ~~L~L~~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~  591 (938)
                      ++++.+++.++...+..++++++|++++|+|++.++.   ..+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~---~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccc---cccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3455555555543333446777777777777654331   3456789999999999999999999999999999999999


Q ss_pred             CcccccCCcccCCCCCCcEEEccccccccccc-ccccCcCCcEEECCCCccCCCCChhHhhhcCcccEEeeCCCcccccC
Q 036642          592 NKFTGNLPISLGSLISLQSLHLRKNNLSGTIH-SLKNCTALLTLDVGENEFVENIPTWIGERFSRMVVLILRSNKFHSLL  670 (938)
Q Consensus       592 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  670 (938)
                      |++++..|..|.++++|++|+|++|++++..+ .|..+++|++|+|++|++....+....  ...++.+.+..+.++...
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCC
Confidence            99998888899999999999999999998888 899999999999999998765443222  234566677778877766


Q ss_pred             CccccCCCccCeeecccccccc
Q 036642          671 PKGLCDLAFLQIVDLADNNLSG  692 (938)
Q Consensus       671 ~~~l~~l~~L~~L~Ls~N~l~~  692 (938)
                      |..+   ..++.++++.|.+.-
T Consensus       166 p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         166 PSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             STTT---TTSBGGGSCTTTCCC
T ss_pred             Chhh---cCCEeeecCHhhCcC
Confidence            6554   456677888887763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-15  Score=158.45  Aligned_cols=83  Identities=14%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             CCCCEEEccCCc--ccC-CCCccccCCCCCCEEECcCC-cCCCccchhhhcCCCCCEEEccCC-cCCchhhHhhhccCCC
Q 036642          265 IQLVFLDLRRNN--FQG-PIPEGLQNLTSLKHLLLDSN-RFNSSIPNWLYRFNRLESLGVSNN-SLQGRVIRSMASLCNL  339 (938)
Q Consensus       265 ~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L  339 (938)
                      ++|+.|+++++.  ++. .+......+++|++|++++| .+++.....+.++++|++|++++| .+++.....++++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            455555555432  221 11122244566666666654 345455555666666666666664 4555555556666666


Q ss_pred             CeeecCCC
Q 036642          340 RSVMLSCV  347 (938)
Q Consensus       340 ~~L~L~~n  347 (938)
                      +.|+++++
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            66666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-14  Score=149.05  Aligned_cols=83  Identities=29%  Similarity=0.272  Sum_probs=40.0

Q ss_pred             CCcEEEccCCccccccchhhhhhhccCCCcceeeccCccCCCccchhhhcCCCCCEEEcCCC-ccccc-CCcccCCCCCC
Q 036642          531 NLIELDFSNNSISGSIFHFICYRAHELKKLQFLYLRGNFLQGELTDCWMNYQNLMILDLSNN-KFTGN-LPISLGSLISL  608 (938)
Q Consensus       531 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L  608 (938)
                      +|++|+++++.+++..   +...+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. +......+++|
T Consensus        47 ~L~~LdLs~~~i~~~~---l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          47 RVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCEEECCCCccCHHH---HHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4555555555444321   1222344566666666666655555555555566666666554 23211 11112334555


Q ss_pred             cEEEcccc
Q 036642          609 QSLHLRKN  616 (938)
Q Consensus       609 ~~L~L~~n  616 (938)
                      ++|++++|
T Consensus       124 ~~L~ls~c  131 (284)
T d2astb2         124 DELNLSWC  131 (284)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            55555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=134.90  Aligned_cols=130  Identities=18%  Similarity=0.111  Sum_probs=92.3

Q ss_pred             CccCCCCCCEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCC
Q 036642          112 SLLDLKHLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSF  191 (938)
Q Consensus       112 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~  191 (938)
                      .+.+...+|+|||++|+|+.  +|..+..+++|++|+|++|+++..  +.|..+++|++|++++|++.......+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence            35567788999999999984  566667788999999999988843  35888889999999999888777666777777


Q ss_pred             CCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCc---ccccCCCCCCEEE
Q 036642          192 LKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPP---LAIANFSTLTTLD  246 (938)
Q Consensus       192 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~  246 (938)
                      |++|++++|+++.++++ ..+..+++|++|++++|.++..+.   ..+..+++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccc-cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888877777765442 345556666666666666655432   2344455555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=2.1e-14  Score=154.80  Aligned_cols=85  Identities=14%  Similarity=0.374  Sum_probs=50.1

Q ss_pred             eeEEEeecCccCcc----CchhccCccCCCEEeCcCccCcccCCccc----cc--cCCCCEEECCCCccccc----CCcc
Q 036642          754 VRIIDFSKNNFSGK----IPLEVTNLKALQSFNLSNNFFTGRIPESI----GA--MRSLESIDFSLNQLSGE----IPQS  819 (938)
Q Consensus       754 l~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~----~~--l~~L~~LdLs~N~l~~~----ip~~  819 (938)
                      |+.|+|++|.++..    +...+...+.|++|+|++|.+++.-...+    ..  .+.|++||+++|+++..    +...
T Consensus       217 L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~  296 (344)
T d2ca6a1         217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  296 (344)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHH
Confidence            35566666665422    33445566677777777777765422222    22  25677778877777643    2333


Q ss_pred             cc-CCCCCCeEeCcCCcccc
Q 036642          820 MS-SLTYLNHLNLSNNNLTG  838 (938)
Q Consensus       820 l~-~l~~L~~L~ls~N~l~g  838 (938)
                      +. +.+.|++|++++|.+..
T Consensus       297 l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         297 IDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHCTTCCEEECTTSBSCT
T ss_pred             HHccCCCCCEEECCCCcCCC
Confidence            32 46677788888887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=5.5e-14  Score=151.44  Aligned_cols=145  Identities=17%  Similarity=0.151  Sum_probs=70.5

Q ss_pred             cCCCCeeecCCCcCccchhhHHHhhhcccccCccEEEccCCcCccc-----cccccCCCCCccEEEccCCeeccc----c
Q 036642          336 LCNLRSVMLSCVKLSQEISEIFDIFSGCVSSGLEILVLRGSSVSGH-----LTYKLGQFKNLYYLDLSNNSIVGP----I  406 (938)
Q Consensus       336 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~----~  406 (938)
                      .+.|+.+.+++|.+.......+...+.... .++.+++++|.+...     +...+..+++|+.|++++|.++..    +
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhh-hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            344555555555544333222222222222 455555555544321     122345566677777777766532    2


Q ss_pred             cccccCCCCCcEEEccCccCCCCCCCCCCccccceeecccccCCCCCCcccC--CCCCCcEEEccCccccccc----chh
Q 036642          407 PFSLGHLSTLQFIDLSYNELNGMNDNWIPPFQLATLGLRHCHLGSRFPSWLH--SQKHLNYLDLSYSGITGSI----PNI  480 (938)
Q Consensus       407 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~----~~~  480 (938)
                      ...+..+++|++|++++|.+++....                   .+...+.  ..+.|++|++++|+++...    ...
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~-------------------~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~  296 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAA-------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  296 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHH-------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             cccccccccchhhhhhcCccCchhhH-------------------HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHH
Confidence            33455666777777776665432000                   0111111  1245677777777665432    222


Q ss_pred             HhhcCcCccEEecccccccc
Q 036642          481 FWSSASQIYVLDLSFNQIHG  500 (938)
Q Consensus       481 ~~~~l~~L~~L~Ls~n~l~~  500 (938)
                      +....++|+.|++++|++..
T Consensus       297 l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         297 IDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHCTTCCEEECTTSBSCT
T ss_pred             HHccCCCCCEEECCCCcCCC
Confidence            22345566666666666543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1.5e-13  Score=122.80  Aligned_cols=103  Identities=25%  Similarity=0.255  Sum_probs=69.1

Q ss_pred             CEEeCCCCCCCCCcccccccCCCCCcEEecCCCcCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEeCCC
Q 036642          120 SYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYTQFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLDLSY  199 (938)
Q Consensus       120 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~  199 (938)
                      |+|||++|+++.  ++ .++++++|++|++++|+++ .+|+.++.+++|++|++++|.+...+  .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC--ccccccccCeEECCC
Confidence            678888888883  44 3778888888888888887 56777888888888888888876542  356666666666666


Q ss_pred             CCCCCCcchhhhhCCCCCCcEEEcCCCCCC
Q 036642          200 VNLSKASDWLRVTNTLPSLVKLRLSRCQLH  229 (938)
Q Consensus       200 n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~  229 (938)
                      |+++..+.+ ..+..+++|+.|++++|.++
T Consensus        75 N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAI-QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTT-GGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCc-hhhcCCCCCCEEECCCCcCC
Confidence            666554332 23344455555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.9e-13  Score=123.52  Aligned_cols=127  Identities=16%  Similarity=0.079  Sum_probs=80.6

Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCC
Q 036642          213 NTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLK  292 (938)
Q Consensus       213 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  292 (938)
                      .+..++++|+|++|+|+.++ ..+..+++|++|++++|+++.   .+.+..+++|++|++++|.++...+..+..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~---l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK---LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE---ECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCc---cCCcccCcchhhhhcccccccCCCccccccccccc
Confidence            34455666666666666663 344566677777777776654   23456667777777777777654444456677777


Q ss_pred             EEECcCCcCCCccc-hhhhcCCCCCEEEccCCcCCchh---hHhhhccCCCCeee
Q 036642          293 HLLLDSNRFNSSIP-NWLYRFNRLESLGVSNNSLQGRV---IRSMASLCNLRSVM  343 (938)
Q Consensus       293 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~  343 (938)
                      +|++++|.++.... ..+..+++|++|++++|.++...   +..++.+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777777764321 35667777777777777765432   33566777777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=5.3e-12  Score=112.42  Aligned_cols=101  Identities=31%  Similarity=0.353  Sum_probs=47.8

Q ss_pred             EEEcCCCCCCCCCcccccCCCCCCEEECCCCCCCCccCcccccCCCCCCEEEccCCcccCCCCccccCCCCCCEEECcCC
Q 036642          220 KLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFDNSFVPNWVFGLIQLVFLDLRRNNFQGPIPEGLQNLTSLKHLLLDSN  299 (938)
Q Consensus       220 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  299 (938)
                      .|++++|+++.++  .+.++++|++|++++|+++.  +|..++.+++|++|++++|.+++ +| .+..+++|++|++++|
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            3444444444332  24444455555555555443  23344445555555555555542 22 2455555555555555


Q ss_pred             cCCCcc-chhhhcCCCCCEEEccCCcCC
Q 036642          300 RFNSSI-PNWLYRFNRLESLGVSNNSLQ  326 (938)
Q Consensus       300 ~l~~~~-p~~l~~l~~L~~L~L~~n~l~  326 (938)
                      +++... ...+..+++|++|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554322 133455555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=2.2e-12  Score=125.65  Aligned_cols=130  Identities=18%  Similarity=0.260  Sum_probs=83.5

Q ss_pred             CChhHhhhcCcccEEeeCCCcccccCCccccCCCccCeeeccccccccccchhhhcchhhhhccccccchhhhhhhhccC
Q 036642          645 IPTWIGERFSRMVVLILRSNKFHSLLPKGLCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTLNSHAGKAIQYQFLLYAS  724 (938)
Q Consensus       645 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~  724 (938)
                      +|..+. .+++|+.|+|++|+++.. + .+..+++|+.|++++|+++ .+|..+..+..                     
T Consensus        40 l~~sl~-~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~---------------------   94 (198)
T d1m9la_          40 MDATLS-TLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADT---------------------   94 (198)
T ss_dssp             CHHHHH-HTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHH---------------------
T ss_pred             hhhHHh-cccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccc---------------------
Confidence            344444 567777777777777643 2 4666777777777777775 34432222222                     


Q ss_pred             CCcchhhcccceeeeecCcchhhhhhccceeEEEeecCccCccCchhccCccCCCEEeCcCccCcccCC-ccccccCCCC
Q 036642          725 RAPSTAMLLEDALVVMKGRAAEYKCILNLVRIIDFSKNNFSGKIPLEVTNLKALQSFNLSNNFFTGRIP-ESIGAMRSLE  803 (938)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~  803 (938)
                                                   |+.|++++|+++. + +.+..+++|+.|++++|+++.... ..++.+++|+
T Consensus        95 -----------------------------L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~  143 (198)
T d1m9la_          95 -----------------------------LEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             -----------------------------CCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             -----------------------------ccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccc
Confidence                                         3677777887773 3 347777788888888888774321 4577778888


Q ss_pred             EEECCCCcccccCCcc----------ccCCCCCCeEe
Q 036642          804 SIDFSLNQLSGEIPQS----------MSSLTYLNHLN  830 (938)
Q Consensus       804 ~LdLs~N~l~~~ip~~----------l~~l~~L~~L~  830 (938)
                      .|+|++|++....+..          +..+++|++||
T Consensus       144 ~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             eeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888888877654432          45667777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.1e-11  Score=109.79  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             eEEEeecCc-cCccCchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCccccCCCCCCeEeCcC
Q 036642          755 RIIDFSKNN-FSGKIPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQSMSSLTYLNHLNLSN  833 (938)
Q Consensus       755 ~~L~Ls~N~-l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  833 (938)
                      +.|++++|+ ++..-+..|.++++|+.|+|++|+|+...|.+|..+++|++|||++|+|+..-+..+.. ..|++|+|++
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~  112 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSG  112 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCS
T ss_pred             CeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCC
Confidence            678887664 77555667899999999999999999888899999999999999999999544444544 4799999999


Q ss_pred             CcccccC
Q 036642          834 NNLTGKI  840 (938)
Q Consensus       834 N~l~g~i  840 (938)
                      |++.+.+
T Consensus       113 Np~~C~C  119 (156)
T d2ifga3         113 NPLHCSC  119 (156)
T ss_dssp             SCCCCCG
T ss_pred             CcccCCc
Confidence            9998755

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6e-11  Score=110.29  Aligned_cols=107  Identities=20%  Similarity=0.100  Sum_probs=58.6

Q ss_pred             CCCEEeCCCCCCCCCcccccccCCCCCcEEecCCC-cCCCCCCcCCCCCCcccEEECCCCcccccCccccCCCCCCCEEe
Q 036642          118 HLSYLDLSYNDFQGVQIPRFICSMGNLRYLNLSYT-QFVGMIPPQLGNLSNLQYLDLSWNFLYVENLWWLPGLSFLKDLD  196 (938)
Q Consensus       118 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~L~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  196 (938)
                      ..+.++.+++.+.  ..|..+..+++|++|++++| .++...+.+|.++++|++|++++|+|..+.+.+|.         
T Consensus         9 ~~~~l~c~~~~~~--~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~---------   77 (156)
T d2ifga3           9 GSSGLRCTRDGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---------   77 (156)
T ss_dssp             SSSCEECCSSCCC--TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG---------
T ss_pred             CCCeEEecCCCCc--cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccc---------
Confidence            3444566665555  34555555566666666544 25544445555555555555555555554444444         


Q ss_pred             CCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCC
Q 036642          197 LSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD  253 (938)
Q Consensus       197 Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  253 (938)
                                       .+++|++|+|++|+++.+++..|..+ +|+.|+|++|.+.
T Consensus        78 -----------------~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          78 -----------------FTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             -----------------SCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             -----------------ccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence                             44455555555555555555555444 4777777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=4.3e-12  Score=123.60  Aligned_cols=130  Identities=21%  Similarity=0.208  Sum_probs=89.5

Q ss_pred             cceeeccCc--cCCCccchhhhcCCCCCEEEcCCCcccccCCcccCCCCCCcEEEcccccccccccccccCcCCcEEECC
Q 036642          560 LQFLYLRGN--FLQGELTDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLSGTIHSLKNCTALLTLDVG  637 (938)
Q Consensus       560 L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls  637 (938)
                      .+.+++++.  .+. .++..+..+++|++|++++|+++. ++ .+..+++|+.|+|++|.++...+....+++|++|+++
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccccccccccccccccccc
Confidence            444455443  122 455677778888888888888874 43 4777888888888888877543344455678888888


Q ss_pred             CCccCCCCChhHhhhcCcccEEeeCCCcccccCC-ccccCCCccCeeeccccccccccc
Q 036642          638 ENEFVENIPTWIGERFSRMVVLILRSNKFHSLLP-KGLCDLAFLQIVDLADNNLSGEVP  695 (938)
Q Consensus       638 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p  695 (938)
                      +|+++. ++ .+. .+++|+.|++++|+++.... ..+..+++|+.|++++|++....+
T Consensus       102 ~N~i~~-l~-~~~-~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         102 YNQIAS-LS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEECCC-HH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccccc-cc-ccc-ccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            888764 33 333 67888888888888876422 467788888888888888875544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.7e-08  Score=91.67  Aligned_cols=65  Identities=26%  Similarity=0.191  Sum_probs=29.0

Q ss_pred             CCCCCEEeCCCCCCCCCcchhhhhCCCCCCcEEEcCCCCCCCCCcccccCCCCCCEEECCCCCCC
Q 036642          189 LSFLKDLDLSYVNLSKASDWLRVTNTLPSLVKLRLSRCQLHHLPPLAIANFSTLTTLDLLYNQFD  253 (938)
Q Consensus       189 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  253 (938)
                      +++|++|+|++|+++.++.+...+..+++|+.|++++|.|+.+.+..+....+|+.|++++|.+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34444444444444444433334444445555555555544444322223334444555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.2e-07  Score=86.32  Aligned_cols=80  Identities=19%  Similarity=0.128  Sum_probs=49.1

Q ss_pred             ccceeEEEeecCccCcc--CchhccCccCCCEEeCcCccCcccCCccccccCCCCEEECCCCcccccCCcc-------cc
Q 036642          751 LNLVRIIDFSKNNFSGK--IPLEVTNLKALQSFNLSNNFFTGRIPESIGAMRSLESIDFSLNQLSGEIPQS-------MS  821 (938)
Q Consensus       751 ~~~l~~L~Ls~N~l~g~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-------l~  821 (938)
                      ++.|+.||||+|+++..  ++..+..+++|+.|+|++|.++...+-.+.....|+.|++++|++++.....       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            34456777777777642  2345666777777777777777433323333456777777777776554422       45


Q ss_pred             CCCCCCeEe
Q 036642          822 SLTYLNHLN  830 (938)
Q Consensus       822 ~l~~L~~L~  830 (938)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566777666

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.68  E-value=1.8e-05  Score=73.34  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=34.2

Q ss_pred             CCCcEEEccCC-ccccccchhhhhhhccCCCcceeeccCccCCCc----cchhhhcCCCCCEEEcCCCccc
Q 036642          530 SNLIELDFSNN-SISGSIFHFICYRAHELKKLQFLYLRGNFLQGE----LTDCWMNYQNLMILDLSNNKFT  595 (938)
Q Consensus       530 ~~L~~L~ls~n-~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  595 (938)
                      ++|++|+++++ .++......+...+...+.|++|++++|.+...    +.+.+...+.|++|++++|.++
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            44555555542 344433334445555566666666666666521    2233344455555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.39  E-value=0.00019  Score=66.18  Aligned_cols=41  Identities=12%  Similarity=0.193  Sum_probs=17.3

Q ss_pred             cCCCCCEEEccCCcCCchhh----HhhhccCCCCeeecCCCcCcc
Q 036642          311 RFNRLESLGVSNNSLQGRVI----RSMASLCNLRSVMLSCVKLSQ  351 (938)
Q Consensus       311 ~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~  351 (938)
                      ..+.|++|++++|.+.....    ..+...+.|+.|++++|.+..
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            33444444444444432221    223334444555555444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.10  E-value=0.00012  Score=67.61  Aligned_cols=110  Identities=19%  Similarity=0.194  Sum_probs=57.4

Q ss_pred             CCCcEEEccC-CccccccchhhhhhhccCCCcceeeccCccCCCcc----chhhhcCCCCCEEEcCCCccccc----CCc
Q 036642          530 SNLIELDFSN-NSISGSIFHFICYRAHELKKLQFLYLRGNFLQGEL----TDCWMNYQNLMILDLSNNKFTGN----LPI  600 (938)
Q Consensus       530 ~~L~~L~ls~-n~l~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~p~  600 (938)
                      ++|++|++++ +.++......++..+...+.|++|++++|.++...    ...+...++++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4566666665 34555444555566666677777777777665432    23344556666666666665422    123


Q ss_pred             ccCCCCCCcEEEcc--cccccc----ccc-ccccCcCCcEEECCCC
Q 036642          601 SLGSLISLQSLHLR--KNNLSG----TIH-SLKNCTALLTLDVGEN  639 (938)
Q Consensus       601 ~~~~l~~L~~L~L~--~n~l~~----~~~-~l~~l~~L~~L~Ls~N  639 (938)
                      .+...++|+.++|.  +|.+..    .+. .+...++|+.|+++.+
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            34445555554442  344432    111 3444555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.66  E-value=0.0011  Score=60.84  Aligned_cols=68  Identities=12%  Similarity=0.051  Sum_probs=40.1

Q ss_pred             cCCCCCCEEECcC-CcCCCc----cchhhhcCCCCCEEEccCCcCCchhhH----hhhccCCCCeeecCCCcCccch
Q 036642          286 QNLTSLKHLLLDS-NRFNSS----IPNWLYRFNRLESLGVSNNSLQGRVIR----SMASLCNLRSVMLSCVKLSQEI  353 (938)
Q Consensus       286 ~~l~~L~~L~L~~-n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~  353 (938)
                      .+.+.|++|++++ +.++..    +-..+...++|++|++++|.+......    .+...+.++.+++++|.+....
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            4557777887776 344322    223344567777777777777654332    3445566666666666665543