Citrus Sinensis ID: 036653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
Protein Sequence
MAESESFEARKRHENPQNDEFEEEEEEEDEEILDDEEEDEGASQLTEPHQLQLTENNKHHKGLQVNSGVESNEGTKLKEQVEVSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTSTQWSVRTEGELAGAAMDLGGEKAMESARTLLSIGFEIKPC
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccccccccccHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEccccccccccEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEEEccccccccEEEEcccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEEEccccccccccccHEHcccEEEcccccccccEEEccccccccEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccEEEEEEEEccc
Coil and Loop (DISEMBL)
maesesfearkrhenpqndefeeeeeeedeeilddeeedegasqltephqlqltennkhhkglqvnsgvesnegtklKEQVEVshhegsgsIAVQAAEsqtqyqlqpsicptslselsptsvtepissapsptltgqnlslvkvdtasvpeanlqtsselknvSVVHIVktpvsdgynwrkygqkqvkspkgsrsyykctysdccakkiecsdhsgHVIEIVNkgmhshdpprknncvresrlissvgpvignnitEQSLRMlndsvpstsskdsvrdsnlvperkrpnlssfagdgevsvkeehpsepepkrrqseerqpskfkpsflkpgkkpkfvvhaagdvgisgdgyrwrkygqkmvkgnpnprnyyrctsagcpvrkhietAVDNTSAVIITYkgvhdhdmpvpkkrhgppsaplvaaaapasmnnlqlkktdaVQNQTTSTQWSVRTEGELAGAAMDLGGEKAMESARTLLSIGFEIKPC
Flexible Loop (DISEMBL)
maesesfearkrhenpqndefeeeeeEEDEEILDDEEEDEGASQLTEPHQLQltennkhhkglqvnsgvesnegTKLKEQVEVSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEAnlqtsselknvsvVHIVKtpvsdgynwrkygqkqvkspkgsrsyyKCTYSDCCAKKIECSDHSGHVIEIVnkgmhshdpprkNNCVRESRLISSVGPVIGNNITEQSLRMLNdsvpstsskdsvrdsnlvperkrpnlssfagdgevsvkeehpsepepkrrqseerqpskfkpsflkpgkkpKFVVHAAgdvgisgdgyrwrKYGQKMvkgnpnprnyyRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTtstqwsvrteGELAGAAMDLGGEKAMESARTLLsigfeikpc
Low Complexity Region (SEG)
MAESESFEARKRHENPQNdefeeeeeeedeeilddeeedeGASQLTEPHQLQLTENNKHHKGLQVNSGVESNEGTKLKEQVEVSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKRHGppsaplvaaaapaSMNNLQLKKTDAVQNQTTSTQWSVRTEGELAGAAMDLGGEKAMESARTLLSIGFEIKPC
Disordered region (IsUnstruct)
****************************************************************************************************************************************************************KNVSVVHIVKTPVSDGYNWRKYGQKQ*******RSYYKCTYSDCCAKKIECSDHSGHVIEIVNK*******************I**VGPVIG***********************************************************************************KFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVH************************************************************************************
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************SDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDG*****************************************VHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDH**********************************************************************TLLSIGFEIKPC
Disordered Region (DISEMBL)
*********************************************TEPHQLQLTENNKHHKGLQVNSGVESNEGTKLK***********GSIAVQA*********QPSICPTSL*****************PTLTGQNLSLVKVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYG************YYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLN*****************VPERKRPNLSSFA******************************KPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMP**********APLVAAAAPASMNNLQLKK*************SVRTEGELAGAAMDLGGEKAMESARTLLSIGFEIKPC
Disordered Region (DISPRO)
***************************************************************************************************************************************************************************PVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHS*******************************************************************************************************GKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVH***********************************************************************RTLLSIGFEIKPC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAESESFEARKRHENPQxxxxxxxxxxxxxxxxxxxxxDEGASQLTEPHQLQLTENNKHHKGLQVNSGVESNEGTKLKEQVEVSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTSTQWSVRTEGELAGAAMDLGGEKAMESARTLLSIGFEIKPC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	487	2.2.26 [Sep-21-2011]
P59583	466	Probable WRKY transcripti	yes	no	0.872	0.912	0.519	1e-114
Q9XI90	514	Probable WRKY transcripti	no	no	0.474	0.449	0.393	5e-45
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.466	0.442	0.411	8e-45
Q93WV0	557	Probable WRKY transcripti	no	no	0.490	0.429	0.407	4e-43
Q8S8P5	519	Probable WRKY transcripti	no	no	0.457	0.429	0.409	2e-42
Q9C5T3	309	Probable WRKY transcripti	no	no	0.371	0.585	0.415	3e-39
O22921	393	Probable WRKY transcripti	no	no	0.482	0.597	0.375	3e-38
O65590	568	Probable WRKY transcripti	no	no	0.468	0.401	0.380	6e-38
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.420	0.108	0.349	3e-26
Q9FG77	687	Probable WRKY transcripti	no	no	0.160	0.113	0.582	5e-24

>sp|P59583|WRK32_ARATH Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/462 (51%), Positives = 302/462 (65%), Gaps = 37/462 (8%)

Query: 35  DEEEDEGASQLTEPHQ--LQLTENNKHHKGLQVNSGVESN--EGTKLKEQVEVSHHEGSG 90
           DEE+  GA  + + H   ++ T      +G++ NS VE N  +  ++ E   V     S 
Sbjct: 33  DEEKSLGA-DMEDLHDETVRETLGKDQVQGVRENSSVEPNVEDVLEVNETDSVKETVVSA 91

Query: 91  SIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVP 150
            + V   E   Q +  PS+  +S S     +VT  +S  P+   T Q+L LV     SVP
Sbjct: 92  IVPVDEVEENRQVETSPSLAASSDS----LTVTPCLSLDPATASTAQDLPLV-----SVP 142

Query: 151 EANLQTSSE--LKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK 208
               Q S    +  +SV  + +TP  DGYNWRKYGQKQVKSPKGSRSYY+CTY++CCAKK
Sbjct: 143 TKQEQRSDSPVVNRLSVTPVPRTPARDGYNWRKYGQKQVKSPKGSRSYYRCTYTECCAKK 202

Query: 209 IECSDHSGHVIEIVNKGMHSHDPPRKNNCV-RESRLISSVGPVIGNNITEQSLRML-NDS 266
           IECS+ SG+V+EIVNKG+H+H+PPRK +   RE R+ +++ PV  ++   + L ++ + S
Sbjct: 203 IECSNDSGNVVEIVNKGLHTHEPPRKTSFSPREIRVTTAIRPVSEDDTVVEELSIVPSGS 262

Query: 267 VPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKP 326
            PS S+K+ + +S  + +RKR              + E   EPEPKRR  ++   S+   
Sbjct: 263 DPSASTKEYICESQTLVDRKR------------HCENEAVEEPEPKRRLKKDN--SQSSD 308

Query: 327 SFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIE 386
           S  KPGKK KFVVHAAGDVGI GDGYRWRKYGQKMVKGNP+PRNYYRCTSAGCPVRKHIE
Sbjct: 309 SVSKPGKKNKFVVHAAGDVGICGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIE 368

Query: 387 TAVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTT 446
           TAV+NT AVIITYKGVH+HDMPVPKKRHGPPS+ LVAAAAP SM      +TD   N  T
Sbjct: 369 TAVENTKAVIITYKGVHNHDMPVPKKRHGPPSSMLVAAAAPTSMRT----RTDDQVNIPT 424

Query: 447 STQWSVRTEGE-LAGAAMDLGGEKAMESARTLLSIGFEIKPC 487
           S+Q SV  E E  +  A+D+GGEK MESARTLLSIGFEIK C
Sbjct: 425 SSQCSVGRESEKQSKEALDVGGEKVMESARTLLSIGFEIKQC 466

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  182 bits (462), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/254 (39%), Positives = 144/254 (56%), Gaps = 23/254 (9%)

Query: 169 VKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHS 228
           V  P  DGYNWRKYGQKQVK  +  RSYYKCT   C  KK       G V EI+ KG H+
Sbjct: 224 VDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHN 283

Query: 229 HDPPR------KNNCVRES-------RLISSVGPV-IGNNITEQSLRMLNDSVPSTSSKD 274
           H+PP+      K+N    +       R  S +G      N + ++ R  +++V   ++ +
Sbjct: 284 HEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTE 343

Query: 275 SVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKK 334
            + +++   E          G+GE  V+E+  +EP+PKRR +E R       +  +   +
Sbjct: 344 HLSEASDGEE---------VGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTE 394

Query: 335 PKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSA 394
           P+ +V    +V +  DGYRWRKYGQK+VKGNP PR+YY+CT+ GC VRKH+E A  +  A
Sbjct: 395 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKA 454

Query: 395 VIITYKGVHDHDMP 408
           V+ TY+G H+HD+P
Sbjct: 455 VVTTYEGKHNHDLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  181 bits (460), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 100/243 (41%), Positives = 133/243 (54%), Gaps = 16/243 (6%)

Query: 172 PVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDP 231
           P  DGYNWRKYGQKQVK     RSYYKCT+  C  KK       G V EI+ KG H+H+ 
Sbjct: 248 PADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHEL 307

Query: 232 PRK---NNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRP 288
           P+K   NN   +S  I++      +++ +         V +T       DS  V      
Sbjct: 308 PQKRGNNNGSCKSSDIANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEV------ 361

Query: 289 NLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGIS 348
                 G+ E SV E H  EP+PKRR +E R       S  +   +P+ +V    +V + 
Sbjct: 362 ------GNAETSVGERHEDEPDPKRRNTEVRVSEPVASSH-RTVTEPRIIVQTTSEVDLL 414

Query: 349 GDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMP 408
            DGYRWRKYGQK+VKGNP PR+YY+CT+  C VRKH+E A  +  AV+ TY+G H+HD+P
Sbjct: 415 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVP 474

Query: 409 VPK 411
             +
Sbjct: 475 AAR 477

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/275 (40%), Positives = 151/275 (54%), Gaps = 36/275 (13%)

Query: 151 EANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIE 210
           E ++QTS      S   I+     DGYNWRKYGQK VK  +  RSYYKCT+ +C  KK+ 
Sbjct: 191 EESIQTSQNDSRGSTPSIL---ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLF 247

Query: 211 CSDHSGHVIEIVNKGMHSH---DPPRKNN---CVRESRL---ISSVGPVIGNNITEQSLR 261
              H G + +I+ KG H H    P R+N+     +E RL    SS G        E+   
Sbjct: 248 ERSHDGQITDIIYKGTHDHPKPQPGRRNSGGMAAQEERLDKYPSSTG------RDEKGSG 301

Query: 262 MLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPE-----PKRRQS 316
           + N S P+  + +        PE   P +S+    GE +    +  EP+      KRR+ 
Sbjct: 302 VYNLSNPNEQTGN--------PEV--PPISASDDGGEAAASNRNKDEPDDDDPFSKRRRM 351

Query: 317 EERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTS 376
           E     +  P  +KP ++P+ VV    +V I  DGYRWRKYGQK+V+GNPNPR+YY+CT+
Sbjct: 352 EGAM--EITP-LVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTA 408

Query: 377 AGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPK 411
            GCPVRKH+E A  +  AVI TY+G HDHD+P  K
Sbjct: 409 HGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSK 443

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/254 (40%), Positives = 134/254 (52%), Gaps = 31/254 (12%)

Query: 175 DGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRK 234
           DGYNWRKYGQKQVK  +  RSYYKCT+ +C  KK       G + EIV KG H+H  P+ 
Sbjct: 185 DGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQS 244

Query: 235 ----------------NNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRD 278
                           N  +  +R  SS  P   N+  +     +     +TS  DSV D
Sbjct: 245 TRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTTS--DSVGD 302

Query: 279 SNLVPERKRPNLSSFAGDGEVSVKEEH-PSEPEPKRRQSEERQPSKFKPSFLKPGKKPKF 337
                           G   VS  EE   SEPE KR + +  + +       K  ++P+ 
Sbjct: 303 DEFE-----------QGSSIVSRDEEDCGSEPEAKRWKGDN-ETNGGNGGGSKTVREPRI 350

Query: 338 VVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVII 397
           VV    D+ I  DGYRWRKYGQK+VKGNPNPR+YY+CT+ GCPVRKH+E A  +  AVI 
Sbjct: 351 VVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVIT 410

Query: 398 TYKGVHDHDMPVPK 411
           TY+G H+HD+P  +
Sbjct: 411 TYEGKHNHDVPAAR 424

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/243 (41%), Positives = 123/243 (50%), Gaps = 62/243 (25%)

Query: 175 DGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDPPR 233
           DGYNWRKYGQKQVK  +  RSY+KCTY +C  KK +E S   G +IEIV KG H+H  P+
Sbjct: 118 DGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNH--PK 175

Query: 234 KNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSF 293
             +  R S                           ST+       SN             
Sbjct: 176 PQSTKRSS---------------------------STAIAAHQNSSN------------- 195

Query: 294 AGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYR 353
            GDG    K+    E E KR + EE              K+P+ VV    D+ I  DGYR
Sbjct: 196 -GDG----KDIGEDETEAKRWKREENV------------KEPRVVVQTTSDIDILDDGYR 238

Query: 354 WRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKR 413
           WRKYGQK+VKGNPNPR+YY+CT  GC VRKH+E A  +  +VI TY+G H H +P P  R
Sbjct: 239 WRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTP--R 296

Query: 414 HGP 416
            GP
Sbjct: 297 RGP 299

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 134/248 (54%), Gaps = 13/248 (5%)

Query: 166 VHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKG 225
            ++V    +DGY WRKYGQKQVK  +  RSY+KCTY DC +KKI  +   G + EI+ KG
Sbjct: 158 AYMVSRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKG 217

Query: 226 MHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPER 285
            H+H  P       +S L SSV             R+ N +   +   D   +S++  + 
Sbjct: 218 GHNHPKPEFTKRPSQSSLPSSV----------NGRRLFNPASVVSEPHDQSENSSISFDY 267

Query: 286 KRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDV 345
                 SF  +     +EE   E +  +R+ E+   S       K  K+P+ VV    D+
Sbjct: 268 SDLEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSI---EVSKGVKEPRVVVQTISDI 324

Query: 346 GISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDH 405
            +  DG+RWRKYGQK+VKGN NPR+YY+CT  GC V+K +E +  +  AV+ TY+G H+H
Sbjct: 325 DVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNH 384

Query: 406 DMPVPKKR 413
           D+P   +R
Sbjct: 385 DIPTALRR 392

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  159 bits (401), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/271 (38%), Positives = 135/271 (49%), Gaps = 43/271 (15%)

Query: 172 PVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDP 231
           P  DGYNWRKYGQK VK  +  RSYYKCT+ +C AKK       GH+IEI+  G H H  
Sbjct: 176 PADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSK 235

Query: 232 PRKNNCVRESRLISS-VGPVIGNNITE-QSLRMLNDSVPSTS------------------ 271
           P  N   R S + SS  G  +  + TE +     N+++  TS                  
Sbjct: 236 PPPN---RRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWTSPVSAELEYGSHSGSMQVQ 292

Query: 272 -------SKDSVRDSNLVPERKRPNLS----SFAGDGEVSVKEEHPSEPEPKRRQSEERQ 320
                    D+  D+    E +    S    S   DGEV        E E KRR+ E   
Sbjct: 293 NGTHQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVE-------ESESKRRKLEAYA 345

Query: 321 PSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCP 380
                 +  +  ++P+ VV    D+ I  DGYRWRKYGQK+VKGNPNPR+YY+CT+ GC 
Sbjct: 346 TETSGST--RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCT 403

Query: 381 VRKHIETAVDNTSAVIITYKGVHDHDMPVPK 411
           V KH+E A D+  +V+ TY G H H +P  +
Sbjct: 404 VTKHVERASDDFKSVLTTYIGKHTHVVPAAR 434

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 121/246 (49%), Gaps = 41/246 (16%)

Query: 147 ASVPEANLQTSSELKNVSVV-HIVKTP------VSDGYNWRKYGQKQVKSPKGSRSYYKC 199
            S P+++L   S    ++++ H+ + P      V+DGYNW+KYGQK+VK  K   SYYKC
Sbjct: 434 TSAPDSSLLAKSNTSGITIIEHMSQQPLNVDKQVNDGYNWQKYGQKKVKGSKFPLSYYKC 493

Query: 200 TYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKN---------------NCVRESRLI 244
           TY  C +K+       G V EIV K  H+H+PP +                NC+  S L 
Sbjct: 494 TYLGCPSKRKVERSLDGQVAEIVYKDRHNHEPPNQGKDGSTTYLSGSSTHINCM-SSELT 552

Query: 245 SSVGPVIGNNITEQSLRMLNDSVPSTS-SKDSVRDSNLVPERKRPNLSSFAGDGEVSVKE 303
           +S        I +Q    L  ++   S + D+  DSN                GE S  E
Sbjct: 553 ASQFSSNKTKIEQQEAASLATTIEYMSEASDNEEDSN----------------GETSEGE 596

Query: 304 EHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVK 363
           +   EPEPKRR +E  Q S+   +  +  ++P+ +     +V    DGYRWRKYGQK+VK
Sbjct: 597 KDEDEPEPKRRITEV-QVSELADASDRTVREPRVIFQTTSEVDNLDDGYRWRKYGQKVVK 655

Query: 364 GNPNPR 369
           GNP PR
Sbjct: 656 GNPYPR 661

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 60/79 (75%)

Query: 333 KKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNT 392
           ++P+ VV    DV I  DGYRWRKYGQK+VKGNPNPR+YY+CT+ GC VRKH+E A  + 
Sbjct: 471 REPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDL 530

Query: 393 SAVIITYKGVHDHDMPVPK 411
            +VI TY+G H+HD+P  +
Sbjct: 531 KSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
409127982	540	WRKY2 [Citrus trifoliata]	1.0	0.901	0.898	0.0
224143953	531	predicted protein [Populus trichocarpa]	0.997	0.915	0.627	1e-160
290894627	499	WRKY transcription factor [Vitis pseudor	0.991	0.967	0.622	1e-158
225445873	499	PREDICTED: probable WRKY transcription f	0.991	0.967	0.630	1e-157
259121425	522	WRKY transcription factor 30 [(Populus t	0.991	0.925	0.617	1e-156
147863604	1798	hypothetical protein VITISV_010335 [Viti	0.995	0.269	0.615	1e-153
118488701	518	unknown [Populus trichocarpa]	0.991	0.932	0.603	1e-149
356500651	505	PREDICTED: probable WRKY transcription f	0.837	0.807	0.656	1e-144
356562575	505	PREDICTED: probable WRKY transcription f	0.806	0.778	0.665	1e-142
255576983	503	WRKY transcription factor, putative [Ric	0.811	0.785	0.635	1e-134

>gi|409127982|gb|AFV15393.1| WRKY2 [Citrus trifoliata]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/520 (89%), Positives = 469/520 (90%), Gaps = 33/520 (6%)

Query: 1   MAESESFEARKRHENPQNDEFEEEEEEEDEEILDDEEEDEGASQLTEPHQLQLTENNKHH 60
           MAESESFEARKRHENPQNDEFEEEEEEEDEEILDDEEED GASQLTEPHQ QLTENNKHH
Sbjct: 1   MAESESFEARKRHENPQNDEFEEEEEEEDEEILDDEEEDWGASQLTEPHQPQLTENNKHH 60

Query: 61  KGLQVNSGVESNEGTKLKEQVEVSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPT 120
           KGLQVNSGV SNEGTKLKEQVEV HHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPT
Sbjct: 61  KGLQVNSGVGSNEGTKLKEQVEVYHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPT 120

Query: 121 SVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWR 180
           SVTEPISSAPSPTLTGQ LSLVKVDTASVPEANLQ SSELKNVSVVHIVKTPVSDGYNWR
Sbjct: 121 SVTEPISSAPSPTLTGQKLSLVKVDTASVPEANLQNSSELKNVSVVHIVKTPVSDGYNWR 180

Query: 181 KYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRE 240
           KYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRE
Sbjct: 181 KYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRE 240

Query: 241 SRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVS 300
           SRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVS
Sbjct: 241 SRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVS 300

Query: 301 VKEEHPSEPEPKRRQSE---------------------------------ERQPSKFKPS 327
           VKEEHPSEPEPKRRQ                                   ++        
Sbjct: 301 VKEEHPSEPEPKRRQVSSGISFCYCFNMDWEDGICDNLVLMVLHLFMNRVKKDNLANSSP 360

Query: 328 FLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIET 387
            LKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIET
Sbjct: 361 LLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIET 420

Query: 388 AVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTS 447
           AVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTS
Sbjct: 421 AVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTS 480

Query: 448 TQWSVRTEGELAGAAMDLGGEKAMESARTLLSIGFEIKPC 487
           TQWSVRTEGELAGAAMDLGGEKAMESARTLLSI FEIKPC
Sbjct: 481 TQWSVRTEGELAGAAMDLGGEKAMESARTLLSIRFEIKPC 520

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143953|ref|XP_002325135.1| predicted protein [Populus trichocarpa] gi|222866569|gb|EEF03700.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 334/532 (62%), Positives = 393/532 (73%), Gaps = 46/532 (8%)

Query: 1   MAESESFEA-------RKRHENPQND-EFEEEEEEE---DEEILDDEEEDEGASQLTEPH 49
           MAESESFEA        KR  N QND +F  EEE E   +EE  ++EEE+E  SQL+E  
Sbjct: 1   MAESESFEALAVQNKEHKREGNEQNDGDFVGEEELEGDYNEEEEEEEEEEEKESQLSELQ 60

Query: 50  QL----------------QLT------------ENNKHH---KGLQVNSGVESNEGTKLK 78
           Q+                 LT            EN+++     GL+ NS  E++   + K
Sbjct: 61  QIVPSPQKEEQVREEQVETLTVVPRSSTEILPKENDQYSDDLAGLKGNSAAETHVEAEYK 120

Query: 79  EQVEVSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQN 138
           EQV +SH E  GS+A + + +QTQ QLQPS+CPTSLSELSPTSVT+PISSAPSPT   + 
Sbjct: 121 EQVGLSHQEVLGSVADKNSGAQTQNQLQPSVCPTSLSELSPTSVTQPISSAPSPTPPVKK 180

Query: 139 LSLVKVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYK 198
           LS  +V  A + EA  Q+S+ELK +  V + KT + DGYNWRKYGQKQVKSP+GSRSYYK
Sbjct: 181 LSPPEVKNACISEAGNQSSAELKAL-YVPVAKTSIPDGYNWRKYGQKQVKSPRGSRSYYK 239

Query: 199 CTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQ 258
           CTY DCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKN   R+SR   SVGP++   +TE 
Sbjct: 240 CTYFDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNKSTRKSRTGLSVGPILQTTVTEH 299

Query: 259 SLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEE 318
           ++RML DS P+T S + V++++ + ERKR + SS   + E  +KEE+ SEPEPKRRQS  
Sbjct: 300 TVRMLKDSEPATLSIELVQETSAISERKRQSSSSSDENKETQIKEENTSEPEPKRRQSFL 359

Query: 319 RQPS-KFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSA 377
            + + +   + LKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNP+PRNYYRCTSA
Sbjct: 360 LKGNLECSKAVLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSA 419

Query: 378 GCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKK 437
           GCPVRKHIETAVDNT+A+IITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASM+NL +KK
Sbjct: 420 GCPVRKHIETAVDNTNALIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNLPIKK 479

Query: 438 TDAVQNQTTSTQWSVRTEGELAGAAMDLGG--EKAMESARTLLSIGFEIKPC 487
            DA+Q Q TSTQWSV  EGEL G  +DLGG  EKA+ESARTLLSIGFEIKPC
Sbjct: 480 ADALQGQVTSTQWSVGKEGELNGETLDLGGEKEKAIESARTLLSIGFEIKPC 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290894627|gb|ADD70008.1| WRKY transcription factor [Vitis pseudoreticulata]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 313/503 (62%), Positives = 365/503 (72%), Gaps = 20/503 (3%)

Query: 1   MAESESFEA---RKRHENPQNDEFEE----EEEEEDEEILDDEEEDEGASQLTEPHQLQ- 52
           MA ++SFEA    K   NP++D   +    E   ED E L D E   GA++L EP + + 
Sbjct: 1   MAGNQSFEAPEAEKAEPNPESDSGSDSDSAESGSEDGEGLSDSE-GVGAAELGEPRESET 59

Query: 53  ------LTENNKHH-KGLQVNSGVESNEGTKLKEQVEVSHHEGSGSIAVQAAESQTQYQL 105
                 +TE+      G  +NS  +S    + KEQ  V H E   ++  Q    QT+ QL
Sbjct: 60  LAVASSITESGSQLLSGSALNSTAQSLASVEFKEQARVCHQEVQTTVTAQTTHVQTKKQL 119

Query: 106 QPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLS-LVKVDTASVPEANLQTSSELKNVS 164
           Q S CPTS  ELSPTSVT+ I SAPSPT+  +  S   K ++  +PE N + SS+LK +S
Sbjct: 120 QSSGCPTSSVELSPTSVTQSIQSAPSPTILERRPSPFPKANSECMPEGNQKNSSDLKTIS 179

Query: 165 VVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNK 224
            V  VKTP +DGYNWRKYGQKQVKSPKGSRSYYKCTYSDC AKKIEC D SG VIEI+ K
Sbjct: 180 TVPSVKTPSADGYNWRKYGQKQVKSPKGSRSYYKCTYSDCYAKKIECCDDSGQVIEIIYK 239

Query: 225 GMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPE 284
             H+HDPPRK NC++E +L S +GPV GN+ T   +RMLNDS PSTSSK+ V+++ L+PE
Sbjct: 240 SRHNHDPPRKINCMKEGKL-SPIGPVTGNSTTADPVRMLNDSDPSTSSKEPVQETPLIPE 298

Query: 285 RKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGD 344
           RKRPN  +   + E+ VKEEH  EPEPKRR  +    +    S  KPGKKPKFVVHAAGD
Sbjct: 299 RKRPNSDASDENAEIKVKEEHIDEPEPKRRTKKSSLGNSG--SHFKPGKKPKFVVHAAGD 356

Query: 345 VGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHD 404
           VGISGDGYRWRKYGQKMVKGNP+PRNYYRCTSAGCPVRKHIETA+DNTSAVIITYKG+HD
Sbjct: 357 VGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAIDNTSAVIITYKGIHD 416

Query: 405 HDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTSTQWSVRTEGELAGAAMD 464
           HDMPVPKKRHGPPSAPLVA AAPASMN+LQ KKT+A QNQ +STQWSV  EGELA   +D
Sbjct: 417 HDMPVPKKRHGPPSAPLVAVAAPASMNSLQFKKTEAFQNQISSTQWSVDMEGELAAEELD 476

Query: 465 LGGEKAMESARTLLSIGFEIKPC 487
            GGEKAMESARTLLSIGFEIKPC
Sbjct: 477 PGGEKAMESARTLLSIGFEIKPC 499

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445873|ref|XP_002276194.1| PREDICTED: probable WRKY transcription factor 32 [Vitis vinifera] gi|297743641|emb|CBI36524.3| unnamed protein product [Vitis vinifera]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 317/503 (63%), Positives = 367/503 (72%), Gaps = 20/503 (3%)

Query: 1   MAESESFEA---RKRHENPQNDEFEE----EEEEEDEEILDDEEEDEGASQLTEPHQLQ- 52
           MA ++SFEA    K   NP++D   +    E   ED E L D E   GA++L EP + + 
Sbjct: 1   MAGNQSFEAPEAEKAEPNPESDSGSDSDSAESGSEDGEGLSDSE-GVGAAELGEPRESET 59

Query: 53  ------LTENNKHH-KGLQVNSGVESNEGTKLKEQVEVSHHEGSGSIAVQAAESQTQYQL 105
                 +TE+      G  +NS  +S    + KEQ  V H E   ++  Q    QT+ QL
Sbjct: 60  LAVASSITESGSQLLSGSALNSTSQSLASVEFKEQAGVCHQEVRTTVTAQTTHVQTKKQL 119

Query: 106 QPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLS-LVKVDTASVPEANLQTSSELKNVS 164
           Q S CPTS  ELSPTSVT+ I SAPSPT+  Q  S   KV++  +PE N + SS+LK +S
Sbjct: 120 QSSGCPTSSVELSPTSVTQSIQSAPSPTILEQRPSPFPKVNSECMPEGNQKNSSDLKTIS 179

Query: 165 VVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNK 224
            V  VKTP +DGYNWRKYGQKQVKSPKGSRSYYKCTYSDC AKKIEC D SG VIEI+ K
Sbjct: 180 TVPSVKTPSADGYNWRKYGQKQVKSPKGSRSYYKCTYSDCYAKKIECCDDSGQVIEIIYK 239

Query: 225 GMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPE 284
             H+HDPPRK NC++E +L S VGPV GN+ T   +RMLNDS PSTSSK+ V+++ L+PE
Sbjct: 240 SRHNHDPPRKINCMKEGKL-SPVGPVTGNSTTADPVRMLNDSDPSTSSKEPVQETPLIPE 298

Query: 285 RKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGD 344
           RKRPN  +   + E+ VKEEH  EPEPKRR  +    +    S  KPGKKPKFVVHAAGD
Sbjct: 299 RKRPNSDASDENPEIKVKEEHIDEPEPKRRSKKSSLGNSG--SHFKPGKKPKFVVHAAGD 356

Query: 345 VGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHD 404
           VGISGDGYRWRKYGQKMVKGNP+PRNYYRCTSAGCPVRKHIETA+DNTSAVIITYKG+HD
Sbjct: 357 VGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAIDNTSAVIITYKGIHD 416

Query: 405 HDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTSTQWSVRTEGELAGAAMD 464
           HDMPVPKKRHGPPSAPLVAAAAPASMN+LQ KKT+A QNQ +STQWSV  EGELA   +D
Sbjct: 417 HDMPVPKKRHGPPSAPLVAAAAPASMNSLQFKKTEAFQNQISSTQWSVDMEGELAAEELD 476

Query: 465 LGGEKAMESARTLLSIGFEIKPC 487
            GGEKAMESARTLLSIGFEIKPC
Sbjct: 477 PGGEKAMESARTLLSIGFEIKPC 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121425|gb|ACV92032.1| WRKY transcription factor 30 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 325/526 (61%), Positives = 383/526 (72%), Gaps = 43/526 (8%)

Query: 1   MAESESFEA-------RKRHENPQND-EF--EEEEEEEDEEILDDEEEDEGASQLTEPHQ 50
           MA SESFEA        KR  N QND +F  EEE E +  E  ++EEE+E  S+L+E  Q
Sbjct: 1   MAGSESFEALAVQNKEHKREGNEQNDGDFVGEEELEGDYNEEEEEEEEEEKESRLSELQQ 60

Query: 51  LQ---------------------------LTENNKHHKGLQVNSGVESNEGTKLKEQVEV 83
           +                            L++ N  + GL+ NS  E++   + KEQV +
Sbjct: 61  IIPSPQKEEEVREEPVETLTVVPLSSTEILSKENDQYSGLKGNSAAETHVEAEYKEQVGL 120

Query: 84  SHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVK 143
           SH E  GS+  + + +QTQ QLQP +CPTSLSELSPTSVT+PISSAPSPT   + LS  +
Sbjct: 121 SHQEVLGSVVDKRSGAQTQNQLQPPVCPTSLSELSPTSVTQPISSAPSPTPPVKKLSPPE 180

Query: 144 VDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSD 203
           V  A + EA  ++S+ELK +  V + KT + DGYNWRKYGQKQVKSP+GSRSYYKCTY D
Sbjct: 181 VKNACISEAGNKSSAELKAL-YVPVAKTSIPDGYNWRKYGQKQVKSPRGSRSYYKCTYFD 239

Query: 204 CCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRML 263
           CCAKKIECSDHSGHVIEIVNKGMHSHDPPRKN   R+SR   S GPV+   +TE ++RML
Sbjct: 240 CCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNRSTRKSRTGLSAGPVLQTTVTEHTVRML 299

Query: 264 NDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSK 323
            DS P+T S + V +++ + ERKR + SS   + E  +KEE+ SEPEPKRR     + SK
Sbjct: 300 KDSEPATLSIELVPETSAISERKRQSSSSSDENKETQIKEENISEPEPKRRLKGNLECSK 359

Query: 324 FKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRK 383
              + LKPGKKPKF+VHAAGDVGISGDGYRWRKYGQKMVKGNP+PRNYYRCTSAGCPVRK
Sbjct: 360 ---AVLKPGKKPKFIVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRK 416

Query: 384 HIETAVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQN 443
           HIETAVDNT+AVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASM++L +KK DA+Q 
Sbjct: 417 HIETAVDNTNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSSLPIKKADALQG 476

Query: 444 QTTSTQWSVRTEGELAGAAMDLGG--EKAMESARTLLSIGFEIKPC 487
           Q TSTQWSV  EGEL G  +DLGG  EKA+ESARTLLSIGFEIKPC
Sbjct: 477 QVTSTQWSVGKEGELTGETLDLGGEKEKAIESARTLLSIGFEIKPC 522

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863604|emb|CAN81922.1| hypothetical protein VITISV_010335 [Vitis vinifera]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 315/512 (61%), Positives = 365/512 (71%), Gaps = 27/512 (5%)

Query: 1    MAESESFEA---RKRHENPQNDEFEE----EEEEEDEEILDDEEEDEGASQLTEPHQLQ- 52
            MA ++SFEA    K   NP++D   +    E   ED E L D E   GA++L EP + + 
Sbjct: 1289 MAGNQSFEAPEAEKAEPNPESDSGSDSDSAESGSEDGEGLSDSE-GVGAAELGEPRESET 1347

Query: 53   ------LTENNKH----------HKGLQVNSGVESNEGTKLKEQVEVSHHEGSGSIAVQA 96
                  +TE+               G  +NS  +S    + KEQ  V H E   ++  Q 
Sbjct: 1348 LAVASSITESGSQLLSGTVGSLARVGSALNSTSQSLASVEFKEQAGVCHQEVRTTVTAQT 1407

Query: 97   AESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLS-LVKVDTASVPEANLQ 155
               QT+ QLQ S CPTS  ELSPTSVT+ I SAPSPT+  Q  S   KV++  +PE N +
Sbjct: 1408 THVQTKKQLQSSGCPTSSVELSPTSVTQSIQSAPSPTILEQRPSPFPKVNSECMPEGNQK 1467

Query: 156  TSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHS 215
             SS+LK +S V  VKTP +DGYNWRKYGQKQVKSPKGSRSYYKCTYSDC AKKIEC D S
Sbjct: 1468 NSSDLKTISTVPSVKTPSADGYNWRKYGQKQVKSPKGSRSYYKCTYSDCYAKKIECCDDS 1527

Query: 216  GHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDS 275
            G VIEI+ K  H+HDPPRK NC++E +L S V PV GN+ T   +RMLNDS PSTSSK+ 
Sbjct: 1528 GQVIEIIYKSRHNHDPPRKINCMKEGKL-SPVXPVTGNSTTADPVRMLNDSDPSTSSKEP 1586

Query: 276  VRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKP 335
            V+++ L+PERKRPN  +   + E+ VKEEH  EPEPKRR   ++       S  KP KKP
Sbjct: 1587 VQETPLIPERKRPNSDASDENPEIKVKEEHIDEPEPKRRSRSKKSSLGNSGSHFKPXKKP 1646

Query: 336  KFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAV 395
            KFVVHAAGDVGISGDGYRWRKYGQKMVKGNP+PRNYYRCTSAGCPVRKHIETA+DNTSAV
Sbjct: 1647 KFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAIDNTSAV 1706

Query: 396  IITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTSTQWSVRTE 455
            IITYKG+HDHDMPVPKKRHGPPSAPLVAAAAPASMN+LQ KKT+A QNQ +STQWSV  E
Sbjct: 1707 IITYKGIHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQFKKTEAFQNQISSTQWSVDME 1766

Query: 456  GELAGAAMDLGGEKAMESARTLLSIGFEIKPC 487
            GELA   +D GGEKAMESARTLLSIGFEIKPC
Sbjct: 1767 GELAAEELDPGGEKAMESARTLLSIGFEIKPC 1798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488701|gb|ABK96161.1| unknown [Populus trichocarpa]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 315/522 (60%), Positives = 371/522 (71%), Gaps = 39/522 (7%)

Query: 1   MAESESFEA-------RKRHENPQND-EFEEEEEEEDEEI-------------------- 32
           MA SESFEA       +KR  N QN+  F EEEE E + I                    
Sbjct: 1   MAGSESFEALEVQNNEQKRQGNEQNNGNFVEEEELEGDYIEEEEESQLSELQQLVELPSS 60

Query: 33  -LDDEEEDEGASQLT---EPHQLQLTENNKHHKGLQVNSGVESNEGTKLKEQVEVSHHEG 88
            +++E  D     LT         L++ N  H GL+ NS ++++   + KEQV +SH E 
Sbjct: 61  QVEEEMRDGQVETLTVVPSSSTAILSKENDQHVGLKGNSALKTHVEAEFKEQVGLSHQEV 120

Query: 89  SGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTAS 148
            GS+  Q+A++QTQYQL PS CPTS SELS TSVT+PISSAPSPT   + LS  +V  A 
Sbjct: 121 LGSVTAQSAKAQTQYQLPPSACPTSSSELSLTSVTQPISSAPSPTPPEKRLSPPEVKNAC 180

Query: 149 VPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK 208
           +PEA  Q+S++LK + V  + +T + DGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK
Sbjct: 181 IPEAGHQSSAKLKALHVP-VARTSIPDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK 239

Query: 209 IECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVP 268
           IECSDHSG VIEIVNKGMHSH PPRKNN  RESR   SVGP++   +TE+++RML DS P
Sbjct: 240 IECSDHSGRVIEIVNKGMHSH-PPRKNNSTRESRSGLSVGPILQTTVTERTVRMLKDSEP 298

Query: 269 STSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSF 328
            T S +  ++   V ERKR + SS   + E  +KEE   EPEPKRR   ++   +   + 
Sbjct: 299 VTLSIEPAQEKPTVSERKRQSSSSSDENKETQIKEEDVGEPEPKRRL--KKGNLECSKAN 356

Query: 329 LKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETA 388
           LKPGKK KFVVHAAGDVGISGDGYRWRKYGQKMVKGNP+PRNYYRCTSAGCPVRKHIETA
Sbjct: 357 LKPGKKTKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETA 416

Query: 389 VDNTSAVIITYKGVHDHDMPVPKKRHG-PPSAPLVAAAAPASMNNLQLKKTDAVQNQTTS 447
           VDNT+AVIITYKGVHDHDMPVPKKRHG P + P  AAAAPAS+++L +KKTD +QNQ  S
Sbjct: 417 VDNTNAVIITYKGVHDHDMPVPKKRHGPPSAPPAAAAAAPASLSSLPIKKTDTLQNQVAS 476

Query: 448 TQWSVRTEGELAGAAMDLGGEK--AMESARTLLSIGFEIKPC 487
           TQWSV  EGEL G  +DLGGEK  A+ESARTLLSIGFEIKPC
Sbjct: 477 TQWSVGKEGELTGETLDLGGEKEAAIESARTLLSIGFEIKPC 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500651|ref|XP_003519145.1| PREDICTED: probable WRKY transcription factor 32-like [Glycine max]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/410 (65%), Positives = 322/410 (78%), Gaps = 2/410 (0%)

Query: 78  KEQVEVSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQ 137
           KE VE    E     AVQ  ++QT+ +LQ S+C   LS+LSPTSVT+ +S   SPT+  Q
Sbjct: 98  KETVESPEKETIERGAVQPLQTQTENRLQVSVCSIPLSDLSPTSVTQSLSIVSSPTVQKQ 157

Query: 138 NLSLVKVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYY 197
            +S  KV+   VPE + +  S  K +S V + +T  SDGYNWRKYGQKQVKSP GSRSYY
Sbjct: 158 KISTPKVNNTHVPEVDRKNPSGRKTLSAVSVARTSASDGYNWRKYGQKQVKSPTGSRSYY 217

Query: 198 KCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITE 257
           +CT+SDCCAKKIEC D SGHVIEIV K  HSHDPPRK N +RE++ +SS  P++ N++ E
Sbjct: 218 RCTHSDCCAKKIECCDDSGHVIEIVYKSEHSHDPPRKTNSIRENKFLSSSEPIVENSVPE 277

Query: 258 QSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSE 317
           Q +R+L D+ PS SSK+S++++    ++KR N S+ +G+ +V +KEEH +EPEPK+R  +
Sbjct: 278 QPVRVLKDADPSISSKESLQEAPCSNDKKRQNTSNISGNDKVILKEEHVNEPEPKKRMKK 337

Query: 318 ERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSA 377
                   P  +KPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNP+PRNYYRCTSA
Sbjct: 338 GDLTEMDSP--VKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSA 395

Query: 378 GCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKK 437
           GCPVRKHIETAVDN+ AVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMN+LQ+KK
Sbjct: 396 GCPVRKHIETAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQVKK 455

Query: 438 TDAVQNQTTSTQWSVRTEGELAGAAMDLGGEKAMESARTLLSIGFEIKPC 487
            D+ QN+  STQWSV TEGEL G A++LGGEKAMESARTLLSIGFEIKPC
Sbjct: 456 PDSPQNKKISTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562575|ref|XP_003549545.1| PREDICTED: probable WRKY transcription factor 32 [Glycine max]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/395 (66%), Positives = 317/395 (80%), Gaps = 2/395 (0%)

Query: 93  AVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEA 152
           AVQ  ++QT+ +LQ S C T LS+LSPTSVT+ +S   SPT+  Q +S  KV+ A VPE 
Sbjct: 113 AVQPLQTQTEDRLQVSACSTPLSDLSPTSVTQSLSIVSSPTIPKQKISTPKVNNAHVPEV 172

Query: 153 NLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECS 212
           + +  S  K +S V I +T  SDGYNWRKYGQKQVKSP GSRSYY+CT+SDCCAKKIEC 
Sbjct: 173 DKKNPSGRKTLSSVSIARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECC 232

Query: 213 DHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSS 272
           D SGHVIEIV K  HSHDPPRK N +RE++ +SS  P++ N++ EQ +++L D+ PS SS
Sbjct: 233 DDSGHVIEIVYKSEHSHDPPRKTNSIRENKFLSSSEPIVENSVPEQPIKVLKDADPSISS 292

Query: 273 KDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPG 332
           K+S++++    ++KR N S+ +G+G+V +KEEH +EP PK+R  +        P  +KPG
Sbjct: 293 KESLQEAPCSTDKKRQNTSNISGNGKVILKEEHVNEPVPKKRMKKGDLTDMDSP--VKPG 350

Query: 333 KKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNT 392
           KK KFVVHAAGDVGIS DGYRWRKYGQKMVKGNP+PRNYYRCTSAGCPVRKHIETAVDN+
Sbjct: 351 KKSKFVVHAAGDVGISADGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNS 410

Query: 393 SAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQLKKTDAVQNQTTSTQWSV 452
            AVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPAS+N+LQ+KK+D+ QN+  STQWSV
Sbjct: 411 DAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASLNSLQVKKSDSPQNKKISTQWSV 470

Query: 453 RTEGELAGAAMDLGGEKAMESARTLLSIGFEIKPC 487
            TEGEL G A++LGGEKAMESARTLLSIGFEIKPC
Sbjct: 471 DTEGELTGEALELGGEKAMESARTLLSIGFEIKPC 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576983|ref|XP_002529376.1| WRKY transcription factor, putative [Ricinus communis] gi|223531124|gb|EEF32972.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 274/431 (63%), Positives = 318/431 (73%), Gaps = 36/431 (8%)

Query: 62  GLQVNSGVESN-EGTKLKEQVEVSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPT 120
           GL+ N+G+E + + ++ KEQ  +SH E SG +  Q AE+QTQ QLQ S+CPTSLSELSPT
Sbjct: 104 GLEDNAGLEKHVDDSEFKEQDGISHPEVSGDVTSQCAEAQTQNQLQSSVCPTSLSELSPT 163

Query: 121 SVTEPISSAPSPTLTGQNLSLVKVD--TASVPEANLQTSSELKNVSVVHIVKTPVSDGYN 178
           SVT+PISSAPSPTL    +S  K +   A +PEA+ Q SSELK++S+  IVK  V DGYN
Sbjct: 164 SVTQPISSAPSPTLPEPRVSPSKFNNYNACIPEADQQNSSELKSLSLP-IVKAHVLDGYN 222

Query: 179 WRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCV 238
           WRKYGQKQVKSPK                            EIVNKG HSHDPPRKNN  
Sbjct: 223 WRKYGQKQVKSPK----------------------------EIVNKGTHSHDPPRKNNST 254

Query: 239 RESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGE 298
           R S++     PV+ N++ E S+ M  DS  ST  KDS++++  + E+KR N S   G+G+
Sbjct: 255 RGSKVALLSAPVLENSMKEHSMGMHTDSSQSTLFKDSIQETPNISEKKRQNSSGSDGNGK 314

Query: 299 VSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYG 358
           + +KEEH SEPEPKRR  +E    +   + LKPGKKPKFVVHAAGDVGIS DGYRWRKYG
Sbjct: 315 ILIKEEHVSEPEPKRRMKKENL--ECSGTLLKPGKKPKFVVHAAGDVGISSDGYRWRKYG 372

Query: 359 QKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKRHGPPS 418
           QKMVKGNP+PRNYYRCTSAGCPVRKHIETAVDNT AVIITYKGVHDHDMPVPKKRHGPPS
Sbjct: 373 QKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTDAVIITYKGVHDHDMPVPKKRHGPPS 432

Query: 419 APLVAAAAPASMNNLQLKKTDAVQNQTTSTQWSVRTEGELAGAAMDLGG--EKAMESART 476
           APLVAAAAPASM+NLQLKKTD + NQ +STQWSV  EGEL    +DLGG  EKA+ESART
Sbjct: 433 APLVAAAAPASMSNLQLKKTDTLPNQISSTQWSVGKEGELTSETLDLGGEKEKAIESART 492

Query: 477 LLSIGFEIKPC 487
           LLSIGFEIKPC
Sbjct: 493 LLSIGFEIKPC 503

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
TAIR|locus:505006536	466	WRKY32 "WRKY DNA-binding prote	0.819	0.856	0.501	5.6e-100
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.640	0.607	0.352	2e-49
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.648	0.615	0.341	2.9e-48
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.574	0.502	0.383	6.2e-46
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.472	0.443	0.433	4.4e-45
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.164	0.258	0.575	1.7e-42
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.507	0.628	0.380	1.9e-42
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.164	0.189	0.560	1.1e-37
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.217	0.154	0.504	2.8e-37
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.254	0.218	0.433	1.2e-36

TAIR|locus:505006536 WRKY32 "WRKY DNA-binding protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 214/427 (50%), Positives = 271/427 (63%)

Query:    68 GVESNEGTK--LKEQVEVSHHEGSGSIAVQAAE--SQTQYQLQPSICPTSLSELSPTSVT 123
             GV  N   +  +++ +EV+  +      V A     + +   Q    P+  +     +VT
Sbjct:    61 GVRENSSVEPNVEDVLEVNETDSVKETVVSAIVPVDEVEENRQVETSPSLAASSDSLTVT 120

Query:   124 EPISSAPSPTLTGQNLSLVKVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYG 183
               +S  P+   T Q+L LV V T     ++   S  +  +SV  + +TP  DGYNWRKYG
Sbjct:   121 PCLSLDPATASTAQDLPLVSVPTKQEQRSD---SPVVNRLSVTPVPRTPARDGYNWRKYG 177

Query:   184 QKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHDPPRKNN-CVRESR 242
             QKQVKSPKGSRSYY+CTY++CCAKKIECS+ SG+V+EIVNKG+H+H+PPRK +   RE R
Sbjct:   178 QKQVKSPKGSRSYYRCTYTECCAKKIECSNDSGNVVEIVNKGLHTHEPPRKTSFSPREIR 237

Query:   243 LISSVGPVIGNNITEQSLRML-NDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSV 301
             + +++ PV  ++   + L ++ + S PS S+K+ + +S  + +RKR              
Sbjct:   238 VTTAIRPVSEDDTVVEELSIVPSGSDPSASTKEYICESQTLVDRKR------------HC 285

Query:   302 KEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKM 361
             + E   EPEPKRR  ++   S    S  KPGKK KFVVHAAGDVGI GDGYRWRKYGQKM
Sbjct:   286 ENEAVEEPEPKRRLKKDNSQSS--DSVSKPGKKNKFVVHAAGDVGICGDGYRWRKYGQKM 343

Query:   362 VKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKRHGXXXXXX 421
             VKGNP+PRNYYRCTSAGCPVRKHIETAV+NT AVIITYKGVH+HDMPVPKKRHG      
Sbjct:   344 VKGNPHPRNYYRCTSAGCPVRKHIETAVENTKAVIITYKGVHNHDMPVPKKRHGPPSSML 403

Query:   422 XXXXXXXSMNNLQLKKTDAVQNQTTSTQWSVRTEGELAGA-AMDLGGEKAMESARTLLSI 480
                    SM      +TD   N  TS+Q SV  E E     A+D+GGEK MESARTLLSI
Sbjct:   404 VAAAAPTSMRT----RTDDQVNIPTSSQCSVGRESEKQSKEALDVGGEKVMESARTLLSI 459

Query:   481 GFEIKPC 487
             GFEIK C
Sbjct:   460 GFEIKQC 466

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 118/335 (35%), Positives = 174/335 (51%)

Query:    83 VSHHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLV 142
             ++H +    +  QA ++     +QP       +E  P S  +  SS  +   T   L   
Sbjct:   154 MTHQQALAQVTAQAVQANAN--MQPQ------TEYPPPSQVQSFSSGQAQIPTSAPLPAQ 205

Query:   143 KVDTASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYS 202
             + +T+ V      T  E ++   +++ K P  DGYNWRKYGQKQVK  +  RSYYKCT  
Sbjct:   206 R-ETSDV------TIIEHRSQQPLNVDK-PADDGYNWRKYGQKQVKGSEFPRSYYKCTNP 257

Query:   203 DC-CAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSL- 260
              C   KK+E S   G V EI+ KG H+H+PP+      +    +  G  I NN     L 
Sbjct:   258 GCPVKKKVERS-LDGQVTEIIYKGQHNHEPPQNTKRGNKDNTANINGSSINNNRGSSELG 316

Query:   261 --RMLNDSVPSTSSK--DSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQS 316
               +   +S   T  +  ++V  +         +     G+GE  V+E+  +EP+PKRR +
Sbjct:   317 ASQFQTNSSNKTKREQHEAVSQATTTEHLSEASDGEEVGNGETDVREKDENEPDPKRRST 376

Query:   317 EERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTS 376
             E R       +  +   +P+ +V    +V +  DGYRWRKYGQK+VKGNP PR+YY+CT+
Sbjct:   377 EVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT 436

Query:   377 AGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPK 411
              GC VRKH+E A  +  AV+ TY+G H+HD+P  K
Sbjct:   437 PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAK 471

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 114/334 (34%), Positives = 166/334 (49%)

Query:    83 VSHHEGSGSIAVQAAESQTQY--QLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLS 140
             ++H +    +  QA +    +  Q Q S  P+S  +         ++  PS   +    S
Sbjct:   157 MTHQQALAQVTAQAVQGNNVHMQQSQQSEYPSSTQQQQQQQQQASLTEIPS--FSSAPRS 214

Query:   141 LVKVDTASVPEANLQTS--SELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYK 198
              ++       +   +TS  S  ++ S       P  DGYNWRKYGQKQVK     RSYYK
Sbjct:   215 QIRASVQETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYK 274

Query:   199 CTYSDC-CAKKIECSDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITE 257
             CT+  C   KK+E S   G V EI+ KG H+H+ P+K          ++ G    ++I  
Sbjct:   275 CTHPACPVKKKVERS-LDGQVTEIIYKGQHNHELPQKRG--------NNNGSCKSSDIAN 325

Query:   258 QSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSFAGDGEVSVKEEHPSEPEPKRRQSE 317
             Q  +  N S+  +             +    + S   G+ E SV E H  EP+PKRR +E
Sbjct:   326 Q-FQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETSVGERHEDEPDPKRRNTE 384

Query:   318 ERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSA 377
              R       S  +   +P+ +V    +V +  DGYRWRKYGQK+VKGNP PR+YY+CT+ 
Sbjct:   385 VRVSEPVASSH-RTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP 443

Query:   378 GCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPK 411
              C VRKH+E A  +  AV+ TY+G H+HD+P  +
Sbjct:   444 DCGVRKHVERAATDPKAVVTTYEGKHNHDVPAAR 477

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 119/310 (38%), Positives = 169/310 (54%)

Query:   111 PTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQTSSELKNVSVVHIVK 170
             P+S+S+ + +S +E   S P+P       S   +   S  E ++QTS      S   I+ 
Sbjct:   155 PSSISDAAGSS-SE--LSRPTPPCQMTPTSS-DIPAGSDQEESIQTSQNDSRGSTPSIL- 209

Query:   171 TPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIVNKGMHSHD 230
                 DGYNWRKYGQK VK  +  RSYYKCT+ +C  KK+    H G + +I+ KG H H 
Sbjct:   210 --ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHP 267

Query:   231 PP---RKNN---CVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPE 284
              P   R+N+     +E RL        G +  E+   + N S P+  + +        PE
Sbjct:   268 KPQPGRRNSGGMAAQEERL-DKYPSSTGRD--EKGSGVYNLSNPNEQTGN--------PE 316

Query:   285 RKRPNLSSFAGDGEVSVK-EEHPSEPEP--KRRQSEERQPSKFKPSFLKPGKKPKFVVHA 341
                 + S   G+   S + ++ P + +P  KRR+ E     +  P  +KP ++P+ VV  
Sbjct:   317 VPPISASDDGGEAAASNRNKDEPDDDDPFSKRRRMEGAM--EITP-LVKPIREPRVVVQT 373

Query:   342 AGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKG 401
               +V I  DGYRWRKYGQK+V+GNPNPR+YY+CT+ GCPVRKH+E A  +  AVI TY+G
Sbjct:   374 LSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKAVITTYEG 433

Query:   402 VHDHDMPVPK 411
              HDHD+P  K
Sbjct:   434 KHDHDVPTSK 443

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 107/247 (43%), Positives = 145/247 (58%)

Query:   175 DGYNWRKYGQKQVKSPKGSRSYYKCTYSDC-CAKKIECSDHSGHVIEIVNKGMHSHDPPR 233
             DGYNWRKYGQKQVK  +  RSYYKCT+ +C   KK+E S   G + EIV KG H+H  P+
Sbjct:   185 DGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERS-LEGQITEIVYKGSHNHPKPQ 243

Query:   234 KNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTSSKDSVRDSNLVPERKRPNLSSF 293
                  R S   S+    + N   + + +  +D  P+  S +S   S+    ++  N +S 
Sbjct:   244 STR--RSSSSSSTFHSAVYNASLDHNRQASSDQ-PN--SNNSFHQSDSFGMQQEDNTTSD 298

Query:   294 A-GDGE-------VSVKEEH-PSEPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGD 344
             + GD E       VS  EE   SEPE KR + +  + +       K  ++P+ VV    D
Sbjct:   299 SVGDDEFEQGSSIVSRDEEDCGSEPEAKRWKGDN-ETNGGNGGGSKTVREPRIVVQTTSD 357

Query:   345 VGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHD 404
             + I  DGYRWRKYGQK+VKGNPNPR+YY+CT+ GCPVRKH+E A  +  AVI TY+G H+
Sbjct:   358 IDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHN 417

Query:   405 HDMPVPK 411
             HD+P  +
Sbjct:   418 HDVPAAR 424

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
 Identities = 46/80 (57%), Positives = 59/80 (73%)

Query:   333 KKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNT 392
             K+P+ VV    D+ I  DGYRWRKYGQK+VKGNPNPR+YY+CT  GC VRKH+E A  + 
Sbjct:   218 KEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDP 277

Query:   393 SAVIITYKGVHDHDMPVPKK 412
              +VI TY+G H H +P P++
Sbjct:   278 KSVITTYEGKHKHQIPTPRR 297

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 100/263 (38%), Positives = 147/263 (55%)

Query:   153 NLQTSSELKNVSV-VHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIEC 211
             N Q+    + + +  ++V    +DGY WRKYGQKQVK  +  RSY+KCTY DC +KKI  
Sbjct:   144 NNQSFGTERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVE 203

Query:   212 SDHSGHVIEIVNKGMHSHDPPRKNNCVRESRLISSVGPVIGNNITEQSLRMLNDSVPSTS 271
             +   G + EI+ KG H+H  P       +S L SSV    G        R+ N +   + 
Sbjct:   204 TASDGQITEIIYKGGHNHPKPEFTKRPSQSSLPSSVN---GR-------RLFNPASVVSE 253

Query:   272 SKDSVRDSNLVPERKRPNLSSFAGD-GEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLK 330
               D   +S++  +       SF  + GE+  +EE P E +  +R+ E+   S  + S  K
Sbjct:   254 PHDQSENSSISFDYSDLEQKSFKSEYGEIDEEEEQP-EMKRMKREGEDEGMS-IEVS--K 309

Query:   331 PGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVD 390
               K+P+ VV    D+ +  DG+RWRKYGQK+VKGN NPR+YY+CT  GC V+K +E +  
Sbjct:   310 GVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAA 369

Query:   391 NTSAVIITYKGVHDHDMPVPKKR 413
             +  AV+ TY+G H+HD+P   +R
Sbjct:   370 DERAVLTTYEGRHNHDIPTALRR 392

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query:   334 KPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTS 393
             +PK +V    +V +  DGYRWRKYGQK+VKGNP+PR+YY+CT+  C VRKH+E A  +  
Sbjct:   291 EPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAK 350

Query:   394 AVIITYKGVHDHDMPVPKKRHG 415
             AVI TY+G H+HD  VP  R+G
Sbjct:   351 AVITTYEGKHNHD--VPAARNG 370

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
 Identities = 55/109 (50%), Positives = 73/109 (66%)

Query:   308 EPEPKRRQSEERQPSKFKPSFLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPN 367
             E E KRR+ E    ++   S  +  ++P+ VV    DV I  DGYRWRKYGQK+VKGNPN
Sbjct:   448 ESESKRRKLEAFA-AEMSGS-TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPN 505

Query:   368 PRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPVPKKR-HG 415
             PR+YY+CT+ GC VRKH+E A  +  +VI TY+G H+HD+P  +   HG
Sbjct:   506 PRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHG 554

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 59/136 (43%), Positives = 81/136 (59%)

Query:   277 RDSNLVPERKRPNLS-SFAGDGEVSVKEEHPSEPEPKRRQSEERQPSKFKPSFLKPGKKP 335
             RD N   + +  ++S S   DGEV        E E KRR+ E    ++   S  +  ++P
Sbjct:   310 RDEN--EDDRTSHMSVSLTYDGEVE-------ESESKRRKLEA-YATETSGS-TRASREP 358

Query:   336 KFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAV 395
             + VV    D+ I  DGYRWRKYGQK+VKGNPNPR+YY+CT+ GC V KH+E A D+  +V
Sbjct:   359 RVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSV 418

Query:   396 IITYKGVHDHDMPVPK 411
             + TY G H H +P  +
Sbjct:   419 LTTYIGKHTHVVPAAR 434

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P59583	WRK32_ARATH	No assigned EC number	0.5194	0.8726	0.9120	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	487
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-33
smart00774	59	smart00774, WRKY, DNA binding domain	4e-31
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	1e-26
smart00774	59	smart00774, WRKY, DNA binding domain	6e-22

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  120 bits (302), Expect = 3e-33
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query: 350 DGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDM 407
           DGY WRKYGQK VKG+P PR+YYRCTS GCPV+K +E + D+   V ITY+G H+H  
Sbjct: 3   DGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  114 bits (287), Expect = 4e-31
 Identities = 32/57 (56%), Positives = 44/57 (77%), Gaps = 1/57 (1%)

Query: 350 DGYRWRKYGQKMVKGNPNPRNYYRCTSA-GCPVRKHIETAVDNTSAVIITYKGVHDH 405
           DGY+WRKYGQK++KG+P PR+YYRCT   GCP +K ++ + D+ S V +TY+G H H
Sbjct: 3   DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  101 bits (255), Expect = 1e-26
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDP 231
           + DGYNWRKYGQK VK     RSYY+CT   C  KK +E S     ++EI  +G H+H  
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score = 88.3 bits (220), Expect = 6e-22
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYS-DCCAKK-IECSDHSGHVIEIVNKGMHSH 229
           + DGY WRKYGQK +K     RSYY+CTY+  C AKK ++ SD    V+E+  +G H+H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	487
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.94
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.28
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	91.7
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	88.1
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	85.17

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=1.7e-30  Score=205.93  Aligned_cols=59  Identities=56%  Similarity=1.216  Sum_probs=52.6

Q ss_pred             cCCCcccccccccccCCCCCCCcccccccCCCCccceeeeccCCCCeEEEEEeeeccCC
Q 036653          348 SGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHD  406 (487)
Q Consensus       348 ~dDGy~WRKYGQK~vkgn~~pRsYYrCt~~gC~arK~Ver~~~d~~~~~~tY~G~HnH~  406 (487)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+|+|||+|.|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=2.3e-29  Score=199.12  Aligned_cols=58  Identities=55%  Similarity=1.167  Sum_probs=56.5

Q ss_pred             cCCCcccccccccccCCCCCCCccccccc-CCCCccceeeeccCCCCeEEEEEeeeccC
Q 036653          348 SGDGYRWRKYGQKMVKGNPNPRNYYRCTS-AGCPVRKHIETAVDNTSAVIITYKGVHDH  405 (487)
Q Consensus       348 ~dDGy~WRKYGQK~vkgn~~pRsYYrCt~-~gC~arK~Ver~~~d~~~~~~tY~G~HnH  405 (487)
                      ++|||+|||||||.|+|+++||+||||++ +||+|+|+|||+.+|+.+++|||+|.|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 89999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=3e-29  Score=198.74  Aligned_cols=59  Identities=42%  Similarity=0.847  Sum_probs=49.5

Q ss_pred             CCCccccccccccccCCCCCCCceeeeeeCCeeeee-eEecCCCCcEEEEEeecCCCCCC
Q 036653          173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDP  231 (487)
Q Consensus       173 ~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~~C~akK-~~~~~~dg~~~~i~Y~G~HnH~~  231 (487)
                      ++|||+|||||||.|+|+++|||||||++.+|+|+| |++...|+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999999999998 56666799999999999999974

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.94  E-value=3.2e-28  Score=192.66  Aligned_cols=57  Identities=51%  Similarity=0.987  Sum_probs=53.6

Q ss_pred             CCCccccccccccccCCCCCCCceeeeee-CCeeeee-eEecCCCCcEEEEEeecCCCC
Q 036653          173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTY-SDCCAKK-IECSDHSGHVIEIVNKGMHSH  229 (487)
Q Consensus       173 ~~DGy~WRKYGQK~vkgs~~pRsYYrCt~-~~C~akK-~~~~~~dg~~~~i~Y~G~HnH  229 (487)
                      ++|||+|||||||.|+|+++||+|||||+ .+|+|+| |++.+.||.+++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            48999999999999999999999999999 8999988 666667999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.28  E-value=0.092  Score=39.79  Aligned_cols=49  Identities=27%  Similarity=0.650  Sum_probs=26.2

Q ss_pred             ccCCCcccccccccccCCCCCCCcccccccC---CCCccceeeeccCCCCeEEEEEeeeccC
Q 036653          347 ISGDGYRWRKYGQKMVKGNPNPRNYYRCTSA---GCPVRKHIETAVDNTSAVIITYKGVHDH  405 (487)
Q Consensus       347 ~~dDGy~WRKYGQK~vkgn~~pRsYYrCt~~---gC~arK~Ver~~~d~~~~~~tY~G~HnH  405 (487)
                      ++-|||.-+++...      ....|++|+..   +|+|+=.+.  . +.. .++...+.|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~-~~~-~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--A-GDG-RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE-----TT-EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--C-CCC-EEEECCCccCC
Confidence            44599998776555      45789999953   899999995  2 232 44555599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.70  E-value=0.17  Score=38.33  Aligned_cols=48  Identities=27%  Similarity=0.622  Sum_probs=24.9

Q ss_pred             CCCccccccccccccCCCCCCCceeeeeeC---CeeeeeeEecCCCCcEEEEEeecCCCC
Q 036653          173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYS---DCCAKKIECSDHSGHVIEIVNKGMHSH  229 (487)
Q Consensus       173 ~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~---~C~akK~~~~~~dg~~~~i~Y~G~HnH  229 (487)
                      .-|||.-+++...      ..+.|+||+..   +|.|+=+.. ..++ .+ +...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~-~~~~-~~-~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD-AGDG-RV-VRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE---TT-EE-EE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE-CCCC-EE-EECCCccCC
Confidence            4688887776655      66789999987   799986554 3333 33 344599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=88.10  E-value=0.59  Score=38.51  Aligned_cols=29  Identities=17%  Similarity=0.029  Sum_probs=23.0

Q ss_pred             CeeeeeeEecCCCCcEEEEEeecCCCCCC
Q 036653          203 DCCAKKIECSDHSGHVIEIVNKGMHSHDP  231 (487)
Q Consensus       203 ~C~akK~~~~~~dg~~~~i~Y~G~HnH~~  231 (487)
                      +|+|+=.+....+|....+.+..+|||+.
T Consensus        61 gC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   61 GCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             CCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            79987544444489988899999999974

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=85.17  E-value=0.7  Score=38.08  Aligned_cols=30  Identities=17%  Similarity=0.410  Sum_probs=25.8

Q ss_pred             CCCCccceeeeccCCCCeEEEEEeeeccCCC
Q 036653          377 AGCPVRKHIETAVDNTSAVIITYKGVHDHDM  407 (487)
Q Consensus       377 ~gC~arK~Ver~~~d~~~~~~tY~G~HnH~~  407 (487)
                      .||+|+=.|-+.. +..-.++.+...|||++
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            6999999998876 55678889999999975

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	487
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		6e-22
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-20

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 336 KFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAV 395
           + VVH      I  DGYRWRKYGQK VKG+P PR+YYRC+S GCPV+KH+E +  +T  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 396 IITYKGVHDHDMP 408
           I TY+G HDHDMP
Sbjct: 62  ITTYEGKHDHDMP 74

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 53/71 (74%)
Query: 339 VHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIIT 398
           V    +V +  DGYRWRKYGQK+VKGNP PR+YY+CT+ GC VRKH+E A  +  AV+ T
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 399 YKGVHDHDMPV 409
           Y+G H+HD+P 
Sbjct: 68  YEGKHNHDLPA 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	487
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-38
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	4e-17
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-36
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	8e-17

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  134 bits (339), Expect = 1e-38
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 332 GKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDN 391
           G      V    +V +  DGYRWRKYGQK+VKGNP PR+YY+CT+ GC VRKH+E A  +
Sbjct: 1   GSSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATD 60

Query: 392 TSAVIITYKGVHDHDMP 408
             AV+ TY+G H+HD+P
Sbjct: 61  PKAVVTTYEGKHNHDLP 77

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 11/87 (12%)

Query: 147 ASVPEANLQTSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCA 206
            S   + +QT+SE+            + DGY WRKYGQK VK     RSYYKCT   C  
Sbjct: 1   GSSGSSGVQTTSEV----------DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGV 50

Query: 207 KK-IECSDHSGHVIEIVNKGMHSHDPP 232
           +K +E +      +    +G H+HD P
Sbjct: 51  RKHVERAATDPKAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  128 bits (323), Expect = 2e-36
 Identities = 44/73 (60%), Positives = 54/73 (73%)

Query: 336 KFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAV 395
           + VVH      I  DGYRWRKYGQK VKG+P PR+YYRC+S GCPV+KH+E +  +T  +
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 396 IITYKGVHDHDMP 408
           I TY+G HDHDMP
Sbjct: 62  ITTYEGKHDHDMP 74

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 74.0 bits (182), Expect = 8e-17
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDP 231
           V+DGY WRKYGQK VK     RSYY+C+   C  KK +E S H   ++    +G H HD 
Sbjct: 14  VNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73

Query: 232 P 232
           P
Sbjct: 74  P 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	487
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	82.91
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	82.2

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=6.9e-35  Score=239.63  Aligned_cols=75  Identities=59%  Similarity=1.130  Sum_probs=72.8

Q ss_pred             CceEEeecCCccccCCCcccccccccccCCCCCCCcccccccCCCCccceeeeccCCCCeEEEEEeeeccCCCCC
Q 036653          335 PKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPV  409 (487)
Q Consensus       335 ~~~vv~t~sd~~~~dDGy~WRKYGQK~vkgn~~pRsYYrCt~~gC~arK~Ver~~~d~~~~~~tY~G~HnH~~P~  409 (487)
                      .||+|++.+++++++|||+|||||||.|||++|||+|||||++||+|+|+|||+.+|+.+|+|||+|.|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.8e-34  Score=238.07  Aligned_cols=75  Identities=55%  Similarity=1.080  Sum_probs=69.4

Q ss_pred             CceEEeecCCccccCCCcccccccccccCCCCCCCcccccccCCCCccceeeeccCCCCeEEEEEeeeccCCCCC
Q 036653          335 PKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPV  409 (487)
Q Consensus       335 ~~~vv~t~sd~~~~dDGy~WRKYGQK~vkgn~~pRsYYrCt~~gC~arK~Ver~~~d~~~~~~tY~G~HnH~~P~  409 (487)
                      .+++|++.+++++++|||+|||||||.|||++|||+|||||++||+|+|+|||+.+|+.+|+|||+|.|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999874

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=7.4e-30  Score=210.66  Aligned_cols=63  Identities=43%  Similarity=0.786  Sum_probs=58.7

Q ss_pred             ccCCCccccccccccccCCCCCCCceeeeeeCCeeeee-eEecCCCCcEEEEEeecCCCCCCCC
Q 036653          171 TPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDPPR  233 (487)
Q Consensus       171 ~~~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~~C~akK-~~~~~~dg~~~~i~Y~G~HnH~~p~  233 (487)
                      .+++|||+|||||||.|||++|||+|||||+.+|+|+| |++.+.|+.++.|||+|.|||+.|.
T Consensus        15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            35899999999999999999999999999999999988 6677889999999999999999883

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=8.9e-30  Score=209.30  Aligned_cols=63  Identities=46%  Similarity=0.844  Sum_probs=58.8

Q ss_pred             ccCCCccccccccccccCCCCCCCceeeeeeCCeeeee-eEecCCCCcEEEEEeecCCCCCCCC
Q 036653          171 TPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDPPR  233 (487)
Q Consensus       171 ~~~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~~C~akK-~~~~~~dg~~~~i~Y~G~HnH~~p~  233 (487)
                      ..++|||+|||||||.|||++|||+|||||+.+|+|+| |++..+|+.+++|||+|.|||+.|.
T Consensus        12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            46799999999999999999999999999999999988 6677789999999999999999885

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=82.91  E-value=1.2  Score=36.08  Aligned_cols=60  Identities=20%  Similarity=0.367  Sum_probs=38.4

Q ss_pred             CceEEeecCCccccCCCcccccccccccCCCCCCCccccccc---CCCCccceeeeccCCCCeEEEEEeeeccCCC
Q 036653          335 PKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTS---AGCPVRKHIETAVDNTSAVIITYKGVHDHDM  407 (487)
Q Consensus       335 ~~~vv~t~sd~~~~dDGy~WRKYGQK~vkgn~~pRsYYrCt~---~gC~arK~Ver~~~d~~~~~~tY~G~HnH~~  407 (487)
                      ..+|....+..-++-|||...+--+      ...+.|.+|+.   .+|.|+=....   +  .  +...+.|||++
T Consensus        11 ~~fv~s~rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~--~--~~~~~~HnH~p   73 (87)
T 2rpr_A           11 LEFLRTSLGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H--R--IMVMRSHCHQP   73 (87)
T ss_dssp             CEEEEETTTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T--E--EEECSCCSSCC
T ss_pred             eEEEEcCCCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C--C--EECCCCcCCCC
Confidence            3455544455557789998775321      12368999995   58999966532   2  1  23568899953

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=82.20  E-value=0.98  Score=36.67  Aligned_cols=48  Identities=25%  Similarity=0.533  Sum_probs=31.5

Q ss_pred             CCCccccccccccccCCCCCCCceeeeeeC---CeeeeeeEecCCCCcEEEEEeecCCCCCCC
Q 036653          173 VSDGYNWRKYGQKQVKSPKGSRSYYKCTYS---DCCAKKIECSDHSGHVIEIVNKGMHSHDPP  232 (487)
Q Consensus       173 ~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~---~C~akK~~~~~~dg~~~~i~Y~G~HnH~~p  232 (487)
                      .-|||...+--+      ...+.|.+|+..   +|.|+=+...  ++    ++..+.|||++.
T Consensus        24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~----~~~~~~HnH~p~   74 (87)
T 2rpr_A           24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR----IMVMRSHCHQPD   74 (87)
T ss_dssp             EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE----EEECSCCSSCCC
T ss_pred             EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC----EECCCCcCCCCc
Confidence            478998776432      234789999873   7998754332  22    335788999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	487
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-28
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	4e-20

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  106 bits (265), Expect = 1e-28
 Identities = 41/70 (58%), Positives = 53/70 (75%)

Query: 339 VHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIIT 398
           V    +V +  DGYRWRKYGQK+VKGNP PR+YY+CT+ GC VRKH+E A  +  AV+ T
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 399 YKGVHDHDMP 408
           Y+G H+HD+P
Sbjct: 61  YEGKHNHDLP 70

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 82.2 bits (203), Expect = 4e-20
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 172 PVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHD 230
            + DGY WRKYGQK VK     RSYYKCT   C  +K +E +      +    +G H+HD
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 68

Query: 231 PP 232
            P
Sbjct: 69  LP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	487
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.96

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-34  Score=232.03  Aligned_cols=71  Identities=58%  Similarity=1.176  Sum_probs=67.9

Q ss_pred             EeecCCccccCCCcccccccccccCCCCCCCcccccccCCCCccceeeeccCCCCeEEEEEeeeccCCCCC
Q 036653          339 VHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGVHDHDMPV  409 (487)
Q Consensus       339 v~t~sd~~~~dDGy~WRKYGQK~vkgn~~pRsYYrCt~~gC~arK~Ver~~~d~~~~~~tY~G~HnH~~P~  409 (487)
                      |++.+++++++|||+|||||||.|+|+++||+||||+++||+|+|+|||+.+|+.+++|||+|.|||+.|.
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            56778999999999999999999999999999999999999999999999999999999999999998774

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.6e-30  Score=209.16  Aligned_cols=62  Identities=44%  Similarity=0.798  Sum_probs=58.1

Q ss_pred             cCCCccccccccccccCCCCCCCceeeeeeCCeeeee-eEecCCCCcEEEEEeecCCCCCCCC
Q 036653          172 PVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECSDHSGHVIEIVNKGMHSHDPPR  233 (487)
Q Consensus       172 ~~~DGy~WRKYGQK~vkgs~~pRsYYrCt~~~C~akK-~~~~~~dg~~~~i~Y~G~HnH~~p~  233 (487)
                      .++|||+|||||||.|||++|||+||||++.+|+|+| |++...|+.++.|+|+|.|||+.|+
T Consensus         9 ~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           9 LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             cCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            4799999999999999999999999999999999998 6667779999999999999999884