Citrus Sinensis ID: 036657
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | 2.2.26 [Sep-21-2011] | |||||||
| O82500 | 1095 | Putative disease resistan | no | no | 0.787 | 0.346 | 0.379 | 7e-63 | |
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.748 | 0.189 | 0.398 | 6e-62 | |
| Q9FL92 | 1372 | Probable WRKY transcripti | no | no | 0.715 | 0.250 | 0.356 | 2e-54 | |
| Q9FH83 | 1288 | Probable WRKY transcripti | no | no | 0.733 | 0.274 | 0.335 | 3e-51 | |
| Q40392 | 1144 | TMV resistance protein N | N/A | no | 0.738 | 0.310 | 0.362 | 4e-51 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.702 | 0.259 | 0.337 | 1e-47 | |
| Q9FKN7 | 1613 | Protein DA1-related 4 OS= | no | no | 0.719 | 0.214 | 0.313 | 4e-38 | |
| Q9FHE9 | 354 | Protein PHLOEM PROTEIN 2- | no | no | 0.228 | 0.310 | 0.371 | 6e-14 | |
| Q9LVT1 | 623 | Putative disease resistan | no | no | 0.729 | 0.563 | 0.236 | 9e-10 | |
| Q9FKZ1 | 809 | Probable disease resistan | no | no | 0.733 | 0.436 | 0.240 | 3e-09 |
| >sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 241 bits (616), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 221/385 (57%), Gaps = 6/385 (1%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
+Q++ S DL L+ E A PLAL VLGS + K K++W+ L LK + + KV
Sbjct: 359 KQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKV 418
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTR--IHDDPMSIHDGLNILVSKSLITISD 218
LK+ YD L+ K++F+ IAC F G+ +++ + I ++ + GL +L KSLI +
Sbjct: 419 LKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFE 478
Query: 219 ENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSK 278
++MH LL+++G+ +VR++S EPGKR L + + C VL N GT V GI LD+ +
Sbjct: 479 NGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCE 538
Query: 279 IND-IHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHL-DQGLEYLPEELRYLHWHEY 336
I + ++++ + F M NL LKFYM D M KL L ++GL YLP+ LR LHW Y
Sbjct: 539 IKEELYISEKTFEEMRNLVYLKFYMSSPIDDK-MKVKLQLPEEGLSYLPQ-LRLLHWDAY 596
Query: 337 SLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNL 396
L+ P F PE L+ELN+ +SK++++W G + L+ ++++ S+ L + +L E L
Sbjct: 597 PLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEATKL 656
Query: 397 ERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTE 456
R +L C L + SSI+N +L +L C+ L P I+ S + F +C L
Sbjct: 657 NRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQT 716
Query: 457 FPQISGNIIELKLWYTAIEEVPSSI 481
FP+IS NI L L TAI EVP S+
Sbjct: 717 FPEISTNIRLLNLIGTAITEVPPSV 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 202/379 (53%), Gaps = 19/379 (5%)
Query: 112 LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNSE 171
LS E+V +++GNP L+ L S ++W +K S I + + S L+
Sbjct: 1000 LSLELVKFSNGNPQVLQFLSSI-----DREWNKLSQEVKTTSPIYIPGIFEKSCCGLDDN 1054
Query: 172 VKEIFIDIACFFKGEDIDFMTRIHDD-PMSIHDGLNILVSKSLITISDENELQMHDLLQE 230
+ IF+DIACFF D D + + D S H G LV KSL+TIS N + M +Q
Sbjct: 1055 ERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQA 1114
Query: 231 MGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAFA 290
G+ IVRQESA PG RSRLW+ + + +V + GT +EGIFLD+ + NP F
Sbjct: 1115 TGREIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLK-FDANPNVFE 1173
Query: 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENL 350
M NLRLLK Y K + + QGLEYLP +LR LHW Y L LP F PENL
Sbjct: 1174 KMCNLRLLKLYCSKAEE----KHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENL 1229
Query: 351 IELNLPYSKVEQIWKGEKKAF--------KLKYIDISHSQQLVRMLDLSETPNLERTNLL 402
+ELNLP S +++WKG+K F KLK + +S+S QL ++ LS NLE +L
Sbjct: 1230 VELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLE 1289
Query: 403 NCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISG 462
C L + SI L L KGC L + P + S ++ S C L FP+IS
Sbjct: 1290 GCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISP 1349
Query: 463 NIIELKLWYTAIEEVPSSI 481
N+ EL + T I+E+PSSI
Sbjct: 1350 NVKELYMGGTMIQEIPSSI 1368
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 221/393 (56%), Gaps = 49/393 (12%)
Query: 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLIS-EPSIY-KVLKIS 164
++L E+S +V+ YA+G+PLAL + G L K K+ + ++ LKL P+I+ +K S
Sbjct: 317 QNLHEVSMKVIKYANGHPLALNLYGRELMGK-KRPPEMEIAFLKLKECPPAIFVDAIKSS 375
Query: 165 YDELNSEVKEIFIDIACFFKGEDIDFMTRIHDD-PMSIHDGLNILVSKSLITISDENELQ 223
YD LN K IF+DIACFF+GE++D++ ++ + H G+++LV KSL+TIS EN ++
Sbjct: 376 YDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTIS-ENRVR 434
Query: 224 MHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLK---------------KNKGTDK 268
MH+L+Q++G+ I+ +E+ ++ +RSRLW+ + Y+L+ + + ++
Sbjct: 435 MHNLIQDVGRQIINRET-RQTKRRSRLWEPCSIKYLLEDKEQNENEEQKTTFERAQVPEE 493
Query: 269 VEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEEL 328
+EG+FLD S ++ + AF NM NLRL K Y ++ + L L LP L
Sbjct: 494 IEGMFLDTSNLS-FDIKHVAFDNMLNLRLFKIY---SSNPEVHHVNNFLKGSLSSLPNVL 549
Query: 329 RYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRML 388
R LHW Y L+ LP +F+P +L+E+N+PYS+++++W G K LK I + HSQQLV +
Sbjct: 550 RLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDID 609
Query: 389 DLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDF 448
DL + NLE +L +GC L+SFP + ++
Sbjct: 610 DLLKAQNLEVVDL------------------------QGCTRLQSFPATGQLLHLRVVNL 645
Query: 449 SFCVNLTEFPQISGNIIELKLWYTAIEEVPSSI 481
S C + FP+I NI L L T I E+P SI
Sbjct: 646 SGCTEIKSFPEIPPNIETLNLQGTGIIELPLSI 678
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 211/402 (52%), Gaps = 49/402 (12%)
Query: 97 STESRQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEP- 155
S +++ ++L ELS V+ YA+GNPLA+ V G L K K + + LKL P
Sbjct: 314 SASIKEDMGEQNLQELSVRVINYANGNPLAISVYGRELKGKKKLS-EMETAFLKLKRRPP 372
Query: 156 -SIYKVLKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDD-PMSIHDGLNILVSKSL 213
I K +YD L+ K IF+DIACFF+GE+++++ ++ + H +++LV K L
Sbjct: 373 FKIVDAFKSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCL 432
Query: 214 ITISDENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVL------------- 260
+TIS EN + +H L Q++G+ I+ E+ + +R RLW+ + Y+L
Sbjct: 433 VTIS-ENRVWLHKLTQDIGREIINGETV-QIERRRRLWEPWSIKYLLEYNEHKANGEPKT 490
Query: 261 --KKNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLD 318
K+ +G++++EG+FLD S + L P AF NM NLRLLK Y P+++
Sbjct: 491 TFKRAQGSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCSNPEVHPVINFP---T 546
Query: 319 QGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDI 378
L LP ELR LHW Y LK LP +F+P +L+E+N+PYS+++++W G K L+ I +
Sbjct: 547 GSLHSLPNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRL 606
Query: 379 SHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI 438
HS LV + DL + NLE +L +GC L++FP
Sbjct: 607 CHSHHLVDIDDLLKAENLEVIDL------------------------QGCTRLQNFPAAG 642
Query: 439 HFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSS 480
+ ++ S C+ + +I NI +L L T I +P S
Sbjct: 643 RLLRLRVVNLSGCIKIKSVLEIPPNIEKLHLQGTGILALPVS 684
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Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 208/375 (55%), Gaps = 20/375 (5%)
Query: 111 ELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNS 170
+LS EVV YA G PLAL+V GS L++ +WK + ++K S I LKISYD L
Sbjct: 373 KLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEP 432
Query: 171 EVKEIFIDIACFFKGEDIDFMTRIHDD-PMSIHDGLNILVSKSLITISDENELQMHDLLQ 229
+ +E+F+DIACF +GE+ D++ +I + + GL IL+ KSL+ IS+ N++QMHDL+Q
Sbjct: 433 KQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQ 492
Query: 230 EMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAF 289
+MG+ IV + K+PG+RSRLW +V V+ N GT +E I++ S + + + QA
Sbjct: 493 DMGKYIVNFQ--KDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVS-SYSSTLRFSNQAV 549
Query: 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPEN 349
NM LR+ F M + S H ++YLP LR Y + P FE +
Sbjct: 550 KNMKRLRV--FNMGR--------SSTHY--AIDYLPNNLRCFVCTNYPWESFPSTFELKM 597
Query: 350 LIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLAC 409
L+ L L ++ + +W K L+ ID+S S++L R D + PNLE NL C +L
Sbjct: 598 LVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEE 657
Query: 410 VRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNI---IE 466
V S+ + + L C+SL+ FP ++ S + C +L + P+I G + I+
Sbjct: 658 VHHSLGCCSKVIGLYLNDCKSLKRFP-CVNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQ 716
Query: 467 LKLWYTAIEEVPSSI 481
+ + + I E+PSSI
Sbjct: 717 IHMQGSGIRELPSSI 731
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Nicotiana glutinosa (taxid: 35889) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 194/356 (54%), Gaps = 18/356 (5%)
Query: 108 DLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDE 167
D EL+ EV A PL L VLGSSL ++K+ W + + L+ I K L++SYD
Sbjct: 362 DFKELAFEVAKLAGNLPLGLSVLGSSLKGRTKEWWMEMMPRLRNGLNGDIMKTLRVSYDR 421
Query: 168 LNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIHDGLNILVSKSLITISDENELQMHDL 227
L+ + +++F+ IAC F G ++ ++ + D + G +L KSLI I+ + ++MH+L
Sbjct: 422 LHQKDQDMFLYIACLFNGFEVSYVKDLLKDNV----GFTMLTEKSLIRITPDGYIEMHNL 477
Query: 228 LQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGI---FLDLSKINDIHL 284
L+++G+ I R +S PGKR L + D+ V+ + GT+ + GI F + + +
Sbjct: 478 LEKLGREIDRAKSKGNPGKRRFLTNFEDIHEVVTEKTGTETLLGIRLPFEEYFSTRPLLI 537
Query: 285 NPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD 344
+ ++F M NL+ L+ + + D+P Q L YLP +LR L W + LK LP
Sbjct: 538 DKESFKGMRNLQYLE--IGYYGDLP---------QSLVYLPLKLRLLDWDDCPLKSLPST 586
Query: 345 FEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNC 404
F+ E L+ L + YSK+E++W+G LK +++ +S L + DLS NLE +L+ C
Sbjct: 587 FKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGC 646
Query: 405 RDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQI 460
+ L + SSI+N L L C+ L SFP ++ S ++ + C NL FP I
Sbjct: 647 KSLVTLPSSIQNATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAI 702
|
Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/402 (31%), Positives = 193/402 (48%), Gaps = 56/402 (13%)
Query: 93 SGYDSTESRQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLI 152
S + E QN+R +LS +V+ Y +GNPLAL + G L K K + + LK
Sbjct: 338 SVFGINEPEQNDR-----KLSMKVIDYVNGNPLALSIYGRELMGK-KSEMETAFFELKHC 391
Query: 153 SEPSIYKVLKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIHD-GLNILVSK 211
I VLK +Y L+ K I +DIA FFKGE ++++ ++ ++ +++LV K
Sbjct: 392 PPLKIQDVLKNAYSALSDNEKNIVLDIAFFFKGETVNYVMQLLEESHYFPRLAIDVLVDK 451
Query: 212 SLITISDENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVL----------- 260
++TIS EN +QM++L+Q+ Q I E +R+W+ + + Y+L
Sbjct: 452 CVLTIS-ENTVQMNNLIQDTCQEIFNGEIET----CTRMWEPSRIRYLLEYDELEGSGET 506
Query: 261 ----KKNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLH 316
K + +E IFLD S + + AF NM NL+ LK Y N S L+
Sbjct: 507 KAMPKSGLVAEHIESIFLDTSNVK-FDVKHDAFKNMFNLKFLKIY----NSCSKYISGLN 561
Query: 317 LDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYI 376
+GL+ LP ELR LHW Y L+ LP DF+ +L++L++PYS++ ++ K LK +
Sbjct: 562 FPKGLDSLPYELRLLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRL 621
Query: 377 DISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPR 436
+SHS QLV L N+E +L +GC L+ FP
Sbjct: 622 ILSHSLQLVECDILIYAQNIELIDL------------------------QGCTGLQRFPD 657
Query: 437 GIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVP 478
+ ++ S C + F + NI EL L T I E+P
Sbjct: 658 TSQLQNLRVVNLSGCTEIKCFSGVPPNIEELHLQGTRIREIP 699
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 7 IETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGTFEK 66
I+ S ++++IFSKDY SS+WCL+EL +I DC G IP+FY++ PS V + +G F
Sbjct: 63 IQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGD 122
Query: 67 AF-VHHE--NNFPDKVQKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEV 116
F V E N P++ QKW++ L G E N + E+ E+
Sbjct: 123 TFRVLKEKYKNDPERTQKWQEALESIPKLKGLRLAEKSDRNEREFMNEMILEI 175
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 188/439 (42%), Gaps = 88/439 (20%)
Query: 112 LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKL------ISEPSIYKVLKISY 165
L ++VV + G PL+L+VLG+SL + + W + L E ++ ++ +
Sbjct: 157 LVKQVVGESKGLPLSLKVLGASLNDRPETYWAIAVERLSRGEPVDETHESKVFAQIEATL 216
Query: 166 DELNSEVKEIFIDIACFFKGED------IDFMTRIHD-DPMSIHDGLNILVSKSLIT-IS 217
+ L+ + KE F+D+ F +G+ I+ + +IHD + + D L L +++L+T +
Sbjct: 217 ENLDPKTKECFLDMGAFPEGKKIPVDVLINMLVKIHDLEDAAAFDVLVDLANRNLLTLVK 276
Query: 218 DENELQM-----------HDLLQEMG------QTIVRQESAKEPGKRSRL---WDH-NDV 256
D + M HD+L+++ + R++ P + + L W+ ND
Sbjct: 277 DPTFVAMGTSYYDIFVTQHDVLRDVALHLTNRGKVSRRDRLLMPKRETMLPSEWERSNDE 336
Query: 257 CY---VLKKNKGT-----------DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFY- 301
Y V+ + G K E + ++ S +D ++ P A M LR+
Sbjct: 337 PYNARVVSIHTGEMTEMDWFDMDFPKAEVLIVNFS--SDNYVLPPFIAKMGMLRVFVIIN 394
Query: 302 ---MPKH-NDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPY 357
P H +D PI +S +L L +H E S M+P +NL +L L
Sbjct: 395 NGTSPAHLHDFPIPTSLTNLRSLW------LERVHVPELSSSMIPL----KNLHKLYLII 444
Query: 358 SKV----EQIWKGEKKAF-KLKYIDISHSQQLVRMLDLSETP-------NLERTNLLNCR 405
K+ +Q + F KL I I + DL+E P +L ++ NC
Sbjct: 445 CKINNSFDQTAIDIAQIFPKLTDITIDYCD------DLAELPSTICGITSLNSISITNCP 498
Query: 406 DLACVRSSIENFNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFSFCVNLTEFPQISGNI 464
++ + +I L +L C L+S P I + +D S C++L+ P+ GN+
Sbjct: 499 NIKELPKNISKLQALQLLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNV 558
Query: 465 IELK---LWYTAIEEVPSS 480
L+ + ++ +PSS
Sbjct: 559 RTLEKIDMRECSLSSIPSS 577
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 104/432 (24%), Positives = 189/432 (43%), Gaps = 79/432 (18%)
Query: 100 SRQNNRSRDLLE-LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNL----KLISE 154
SR N S D E L Q+++ +G P+ +EV+G SL +S WK ++ + K++ +
Sbjct: 333 SRPCNTSPDEYEDLLQKILKRCNGFPIVIEVVGVSLKGRSLNTWKGQVESWSEGEKILGK 392
Query: 155 --PSIYKVLKISYDELNSEVKEIFIDIACFFKGED------IDFMTRIHDDPMSI-HDGL 205
P++ + L+ S+D L+ +KE F+D+ F + + ID ++ SI + L
Sbjct: 393 PYPTVLECLQPSFDALDPNLKECFLDMGSFLEDQKIRASVIIDMWVELYGKGSSILYMYL 452
Query: 206 NILVSKSLITI----SDENE--------LQMHDLLQEMGQTIVRQESAKEPGKRSRL--- 250
L S++L+ + ++E+E + HD+L+E+ + Q KE +R RL
Sbjct: 453 EDLASQNLLKLVPLGTNEHEDGFYNDFLVTQHDILRELA---ICQSEFKENLERKRLNLE 509
Query: 251 --------WDHNDVCYVLKKNKGTD------------KVEGIFLDLSKINDIHLNPQAFA 290
W N + L D VE + L+LS +D L P +
Sbjct: 510 ILENTFPDWCLNTINASLLSISTDDLFSSKWLEMDCPNVEALVLNLSS-SDYAL-PSFIS 567
Query: 291 NMSNLRLLK-----FYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-D 344
M L++L FY + ++ +SS LP L+ + + S+ +L
Sbjct: 568 GMKKLKVLTITNHGFYPARLSNFSCLSS----------LP-NLKRIRLEKVSITLLDIPQ 616
Query: 345 FEPENLIELNLPYSKVEQIWKGEKKAF------KLKYIDISHSQQLVRM-LDLSETPNLE 397
+ +L +L+L +++ + KL+ IDI + L + +SE +L+
Sbjct: 617 LQLSSLKKLSLVMCSFGEVFYDTEDIVVSNALSKLQEIDIDYCYDLDELPYWISEIVSLK 676
Query: 398 RTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPIT-IDFSFCVNLTE 456
++ NC L+ + +I N + L +L +L P +S + +D S C+ L +
Sbjct: 677 TLSITNCNKLSQLPEAIGNLSRLEVLRLCSSMNLSELPEATEGLSNLRFLDISHCLGLRK 736
Query: 457 FPQISGNIIELK 468
PQ G + LK
Sbjct: 737 LPQEIGKLQNLK 748
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | ||||||
| 255564976 | 944 | TMV resistance protein N, putative [Rici | 0.783 | 0.399 | 0.490 | 4e-88 | |
| 359496030 | 1195 | PREDICTED: TMV resistance protein N-like | 0.769 | 0.309 | 0.466 | 1e-84 | |
| 224127750 | 1018 | tir-nbs-lrr resistance protein [Populus | 0.779 | 0.368 | 0.475 | 6e-84 | |
| 255544956 | 1403 | leucine-rich repeat containing protein, | 0.783 | 0.268 | 0.471 | 2e-82 | |
| 224127917 | 1470 | tir-nbs-lrr resistance protein [Populus | 0.781 | 0.255 | 0.445 | 3e-82 | |
| 296090597 | 1201 | unnamed protein product [Vitis vinifera] | 0.821 | 0.328 | 0.450 | 8e-82 | |
| 359489175 | 1254 | PREDICTED: TMV resistance protein N-like | 0.790 | 0.303 | 0.438 | 1e-79 | |
| 255561510 | 1018 | TMV resistance protein N, putative [Rici | 0.781 | 0.369 | 0.451 | 2e-79 | |
| 359486071 | 1261 | PREDICTED: TMV resistance protein N-like | 0.775 | 0.295 | 0.430 | 8e-79 | |
| 359495270 | 1154 | PREDICTED: TMV resistance protein N-like | 0.775 | 0.323 | 0.444 | 1e-78 |
| >gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 188/383 (49%), Positives = 254/383 (66%), Gaps = 6/383 (1%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
RQ D ++LS+ V+ YA GNPL L+VLGS LY ++ ++W+ L+ L+ + I V
Sbjct: 360 RQECPKADYMKLSKRVINYAKGNPLGLKVLGSFLYQRNIKEWESALHKLERSTNKEIQNV 419
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDD-PMSIHDGLNILVSKSLITISDE 219
LK+SYD L+ E K+IF+D+ACFF GED DF+TRI + S +++LVSKSL+TIS+
Sbjct: 420 LKVSYDGLDDEEKDIFLDVACFFNGEDRDFVTRILNGCGFSADIAISVLVSKSLLTISN- 478
Query: 220 NELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKI 279
N L +H+LLQ+MG IVRQES KEPG+RSRL DV +VL KN GT+ +EGI+LD+SK
Sbjct: 479 NTLAIHNLLQQMGWGIVRQESTKEPGRRSRLCTSEDVVHVLSKNTGTEAIEGIYLDMSKS 538
Query: 280 NDIHLNPQAFANMSNLRLLKFYMPKHNDIPI-MSSKLHLDQGLEYLPEELRYLHWHEYSL 338
++L+P+AF M NLRLLKF+ H+ PI M SK++L +GLE LP++L LHW+ Y L
Sbjct: 539 RKVYLSPKAFERMHNLRLLKFH---HSFSPIAMYSKVYLPEGLESLPDKLSCLHWNGYPL 595
Query: 339 KMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLER 398
K LPF+F E L+EL++P+S V+ +W+G++ KL I++S SQ L+R+ D SE NLE
Sbjct: 596 KSLPFNFCAEYLVELSMPHSHVKFLWEGDQCLKKLNSINLSDSQHLIRLPDFSEALNLEY 655
Query: 399 TNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFP 458
NL C LA V SSI L +L K C+ LRS P I S ++ S C NL
Sbjct: 656 INLEGCISLAQVPSSIGYLTKLDILNLKDCKELRSIPSLIDLQSLRKLNLSGCSNLNHCQ 715
Query: 459 QISGNIIELKLWYTAIEEVPSSI 481
NI EL L TAIEE+P+SI
Sbjct: 716 DFPRNIEELCLDGTAIEELPASI 738
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496030|ref|XP_002277205.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 180/386 (46%), Positives = 241/386 (62%), Gaps = 16/386 (4%)
Query: 108 DLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDE 167
DL+ELS+ V YA G PLAL++L S L+ K +WK L+ LK P I KVL+ISYDE
Sbjct: 498 DLMELSRRVTTYAQGLPLALKILSSFLFGMKKHEWKSYLDKLKGTPNPDINKVLRISYDE 557
Query: 168 LNSEVKEIFIDIACFFKGEDIDFMTRIHDD----PMSIHDGLNILVSKSLITISDENELQ 223
L+++VK +F+DIACFFKG+D D++ I + P G+ L+ KS ITIS+ N+LQ
Sbjct: 558 LDNKVKNMFMDIACFFKGKDKDYVMEILEGCGFFPAC---GIRTLLDKSFITISN-NKLQ 613
Query: 224 MHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIH 283
MHDL+Q MG +VRQ S EPGK SRLW H DV +V+KKN GT++VEGIFLDLS + +IH
Sbjct: 614 MHDLIQHMGMEVVRQNSPNEPGKWSRLWSHEDVSHVVKKNTGTEEVEGIFLDLSNLQEIH 673
Query: 284 LNPQAFANMSNLRLLKFY---MPKHNDIPIMSS--KLHLDQGLEYLPEELRYLHWHEYSL 338
+ F ++ LRLLK Y + K + K++ L++ +LRYL+W+ YSL
Sbjct: 674 FTSEGFTRINKLRLLKVYKSHISKDSKCTFKKEECKVYFSHNLKFHSNDLRYLYWYGYSL 733
Query: 339 KMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLER 398
K LP +F PE L+E N+PYS ++Q+WKG K KLK++++SHSQ LV + DLS NLER
Sbjct: 734 KSLPDNFNPERLLEFNMPYSHIKQLWKGIKVLEKLKFMELSHSQCLVEIPDLSRASNLER 793
Query: 399 TNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFP 458
L C L + S+ N L L + C +LR FP I S S C L +FP
Sbjct: 794 LVLEGCIHLCAIHPSLGVLNKLIFLSLRDCINLRHFPNSIELKSLQIFILSGCSKLEKFP 853
Query: 459 QISG---NIIELKLWYTAIEEVPSSI 481
+I G ++ EL L IEE+PSSI
Sbjct: 854 EIRGYMEHLSELFLDGIGIEELPSSI 879
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127750|ref|XP_002329168.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870949|gb|EEF08080.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 183/385 (47%), Positives = 250/385 (64%), Gaps = 10/385 (2%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
++N RD +EL + +V YA GNPLAL VLGSSLY +SK++W LN L + P I +V
Sbjct: 276 KKNCPKRDHIELLERMVDYAKGNPLALIVLGSSLYDRSKEKWYSALNKLGKVPNPEIQRV 335
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMS-IHDGLNILVSKSLITISDE 219
L+ISYD L+ E ++IF+DIA FF G + + ++ D S + L+IL+ KSLITIS +
Sbjct: 336 LRISYDGLDGEQQQIFLDIAFFFNGAEWNHAVKVLDSCYSSLQFDLSILIDKSLITIS-Q 394
Query: 220 NELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKI 279
N L+MHD+LQEM +IVR+ES K PGKRSRL DH D+ +VLKK KGT+ VEGI LD+SK+
Sbjct: 395 NTLEMHDILQEMAYSIVREES-KNPGKRSRLCDHEDIYHVLKKKKGTEAVEGICLDISKM 453
Query: 280 NDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSK--LHLD-QGLEYLPEELRYLHWHEY 336
++HL FA M++LR LKFY P + M SK +HL GL+YL +EL+YLHWH +
Sbjct: 454 PEMHLESDTFARMNSLRFLKFYHPFY----FMDSKDKVHLPLSGLKYLSDELKYLHWHRF 509
Query: 337 SLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNL 396
K LP +F EN+++L L S+VEQ+W G + L++ID+S S L+ + DLS NL
Sbjct: 510 PAKSLPQNFCAENIVDLTLHSSRVEQLWTGVQDLLNLRWIDLSRSTYLLEIPDLSRAKNL 569
Query: 397 ERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTE 456
E +L C L V SSI++ L +L GC++L P+ I +D S C + +
Sbjct: 570 EYIDLSFCESLLEVHSSIQHLEKLEILILSGCKNLGIVPKRIESKFLRILDLSHCKKVRK 629
Query: 457 FPQISGNIIELKLWYTAIEEVPSSI 481
P+ISG + EL L TAIEE+P SI
Sbjct: 630 CPEISGYLEELMLQGTAIEELPQSI 654
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/390 (47%), Positives = 239/390 (61%), Gaps = 13/390 (3%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
+QN+ +ELS+ VV Y G PLAL VL S LY K +++W L L+ S I KV
Sbjct: 369 KQNHPVEGYIELSKRVVNYTKGVPLALNVLASFLYSKQREEWTSTLEKLEESSNLEIQKV 428
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIHD-GLNILVSKSLITISDE 219
LKISYDEL K+IF+DIACFFKG D+D++T I D G++ LV KSLI I D
Sbjct: 429 LKISYDELEWVDKDIFLDIACFFKGADVDYVTTILDGCDFFPSIGISRLVDKSLIAIID- 487
Query: 220 NELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKI 279
N+L MHDLLQEMGQ IV++ES++ PGK SRLW + +VL N+GT EGIFLD+SKI
Sbjct: 488 NKLDMHDLLQEMGQHIVQKESSENPGKNSRLWTPESIHHVLTGNRGTFATEGIFLDISKI 547
Query: 280 NDIHLNPQAFANMSNLRLLKFYMPKHNDIP--------IMSSKLHLDQGLEYLPEELRYL 331
+ L+ AF+ M NLRLLKFY HN + S L GL+ LP +L +L
Sbjct: 548 EKVDLSSVAFSKMWNLRLLKFY---HNSFLSWKNPTGFVSESTLDSRDGLQSLPNKLCFL 604
Query: 332 HWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLS 391
HWH Y + LP +F ENL+ELN+P+S+V+++W G K KLK +D+ S+ LV + DLS
Sbjct: 605 HWHGYPWESLPSNFSMENLVELNMPFSQVKELWTGVKHLQKLKLLDLHDSELLVTLPDLS 664
Query: 392 ETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFC 451
NLE+ L NC L + SSI+ L L C+ L+S P I T++ S C
Sbjct: 665 SASNLEKIILNNCTSLLEIPSSIQCLRKLVCLSLSNCKELQSLPSLIPLKYLKTLNLSSC 724
Query: 452 VNLTEFPQISGNIIELKLWYTAIEEVPSSI 481
NL +FP+ISG I EL L T +EE PSS+
Sbjct: 725 SNLKKFPEISGEIEELHLDGTGLEEWPSSV 754
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/382 (44%), Positives = 242/382 (63%), Gaps = 6/382 (1%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
+ N + +ELS + YA GNPLAL+VLGSSL+ ++ ++W+ LN ++ ++ ++ V
Sbjct: 360 KDNQPPYNYMELSVRAINYAKGNPLALKVLGSSLFGRTTKEWESALNKVEKLTRQKVHSV 419
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIHD-GLNILVSKSLITISDE 219
L+ISY+ L+SE K IF+DIACFF+G +DF+ RI D D G ++L+ + LI ISD+
Sbjct: 420 LRISYEALDSEEKSIFLDIACFFRGHRVDFVKRILDGCGFKTDIGFSVLIDRCLIKISDD 479
Query: 220 NELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKI 279
+++MHDLLQEM +VR+ES E G +SRLW DV VL N GT KVEGIFLD+SKI
Sbjct: 480 -KVEMHDLLQEMAHDVVRKESLDELGGQSRLWSPKDVYQVLTNNLGTGKVEGIFLDVSKI 538
Query: 280 NDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK 339
+I L+ A M LRLLK Y N + ++HL GLE L EELRYLHW Y L
Sbjct: 539 REIELSSTALGRMYKLRLLKIY----NSEAGVKCRVHLPHGLESLSEELRYLHWDGYPLT 594
Query: 340 MLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERT 399
LP +F P+NL+E+NL SKV ++W+G++ LK +++S+ + + + DLS+ NLER
Sbjct: 595 SLPSNFRPQNLVEINLSCSKVNRLWRGDQNLVNLKDVNLSNCEHITFLPDLSKARNLERL 654
Query: 400 NLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ 459
NL C L V SSI++ + L L +GCE L + P I+ T++ S C NL + P+
Sbjct: 655 NLQFCTSLVKVPSSIQHLDRLVDLDLRGCERLVNLPSRINSSCLETLNLSGCANLKKCPE 714
Query: 460 ISGNIIELKLWYTAIEEVPSSI 481
+ + L L TA+EE+P SI
Sbjct: 715 TARKLTYLNLNETAVEELPQSI 736
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090597|emb|CBI40966.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 183/406 (45%), Positives = 247/406 (60%), Gaps = 11/406 (2%)
Query: 85 VLTEASNFSGYDSTESRQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKD 144
V TEA F G S+Q + +ELS ++ YA G PL L+VLGS L+ SK +W+
Sbjct: 341 VHTEAIEFLG--RYASKQQIVIDEFMELSNSIITYAQGLPLVLKVLGSFLFSMSKHEWRS 398
Query: 145 KLNNLKLISEPSIYKVLKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDD-PMSIHD 203
+L+ LK I +VL+ISYD L+ + K IF+DIACFFKGED D + +I D
Sbjct: 399 ELDKLKDTPHGRIQEVLRISYDGLDDKEKNIFLDIACFFKGEDKDHVIKILDGCGFFAVC 458
Query: 204 GLNILVSKSLITISDENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKN 263
G+ L+ KSLITIS+ +++ MHDLLQEMG+ I+RQ S KEPGKRSRLW + D +VL KN
Sbjct: 459 GIRGLIDKSLITISNNDKIVMHDLLQEMGRKIIRQTSPKEPGKRSRLWIYKDAYHVLSKN 518
Query: 264 KGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKF--YMPKHND--IPIMSSKLHLDQ 319
GT +VEGIF +LS I +IH +AFA M LRLLKF Y P N K+H+ +
Sbjct: 519 TGTQEVEGIFFNLSDIEEIHFTTKAFAGMDKLRLLKFYDYSPSTNSECTSKRKCKVHIPR 578
Query: 320 GLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDIS 379
++ ELRYLH H Y L+ LP DF P+NL++L+L S V+Q+WKG K KLK++D+S
Sbjct: 579 DFKFHYNELRYLHLHGYPLEQLPHDFSPKNLVDLSLSCSDVKQLWKGIKVLDKLKFMDLS 638
Query: 380 HSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH 439
HS+ LV + S NLE+ +L C L V ++ LS L + C+ L++ P I
Sbjct: 639 HSKYLVETPNFSGISNLEKLDLTGCTYLREVHPTLGVLGKLSFLSLRDCKMLKNIPNSIC 698
Query: 440 FVSPI-TIDFSFCVNLTEFPQISGNIIELKLWY---TAIEEVPSSI 481
+ + T FS C + FP+ GN+ +LK Y TAI +PSSI
Sbjct: 699 KLKSLETFIFSGCSKVENFPENFGNLEQLKELYADETAISALPSSI 744
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489175|ref|XP_002264704.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 169/385 (43%), Positives = 237/385 (61%), Gaps = 5/385 (1%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
+QN ++ +LS V+ YA G PLAL+VLGS LY + QWK L+ LK I+ V
Sbjct: 375 KQNIPPKNYEDLSNCVINYAKGLPLALKVLGSFLYGMTIDQWKSALDKLKGKPNMEIHNV 434
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIHD-GLNILVSKSLITISDE 219
L+IS+D L+ K+IF+DIACFFKGED DF++RI D + GL IL + LITIS+
Sbjct: 435 LRISFDGLDHTEKQIFLDIACFFKGEDKDFISRILDGCNFFANIGLKILCDRCLITISN- 493
Query: 220 NELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKI 279
+++ MHDL+Q+MGQ IVR++ +P K SRLWD +D+ + +G K+E I LD S++
Sbjct: 494 SKIHMHDLIQQMGQEIVREKYPDDPNKWSRLWDPDDIYRAFLRKEGMKKIEAISLDFSRL 553
Query: 280 NDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK 339
+I L+ + F+ M LRLLK Y H+ SK+ + + E ELRYL+W YSL
Sbjct: 554 KEIQLSTKVFSRMKKLRLLKVYWSDHSSFTKKESKVFIPKDFEIPSHELRYLYWEGYSLN 613
Query: 340 MLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERT 399
LP +F ENL+EL L YS ++++WKG K KLK+I++SHS++L ++ S PNLER
Sbjct: 614 CLPSNFHGENLVELELRYSTIKRLWKGSKGLEKLKFINLSHSEKLTKISKFSGMPNLERL 673
Query: 400 NLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ 459
NL C L V SS+ L+ L K C+ L SFP I S +D S C N +FP+
Sbjct: 674 NLEGCTSLRKVHSSLGVLKKLTSLQLKDCQKLESFPSSIELESLEVLDISGCSNFEKFPE 733
Query: 460 ISGNIIELKLWY---TAIEEVPSSI 481
I GN+ L+ Y + I+E+P+SI
Sbjct: 734 IHGNMRHLRKIYLNQSGIKELPTSI 758
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561510|ref|XP_002521765.1| TMV resistance protein N, putative [Ricinus communis] gi|223538978|gb|EEF40575.1| TMV resistance protein N, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 173/383 (45%), Positives = 235/383 (61%), Gaps = 7/383 (1%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
+QNN + LEL+++ YA G PLA++V GS L ++ +W+ N L I I+ V
Sbjct: 361 KQNNAKIEYLELTKQFSSYAKGLPLAVKVFGSFLNGRNILEWQSVKNKLAKIPCIGIHDV 420
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIHD-GLNILVSKSLITISDE 219
L+IS++ L+ +++F+DIACFF G +F I D +L K+LITI D+
Sbjct: 421 LRISFEGLDETQRDVFLDIACFFNGLSKEFARDILGGCGFFPDIAFAVLKDKALITI-DD 479
Query: 220 NELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKI 279
NEL +HDLL+EMG IV QES +EPGKRSRLW +D+ +VL K+ GT VEGIFLD K+
Sbjct: 480 NELLVHDLLREMGHEIVYQESKEEPGKRSRLWIPDDIFHVLTKSTGTKIVEGIFLDTFKV 539
Query: 280 NDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHL-DQGLEYLPEELRYLHWHEYSL 338
+HL+ +AFA M NLR+LKFY + +K+HL D+GL Y+ LR HW Y
Sbjct: 540 RKMHLSSEAFAKMRNLRMLKFYYTGSKYM----NKVHLPDEGLHYMSSNLRLFHWEGYPS 595
Query: 339 KMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLER 398
K LP F ENLIELNL S +EQ+W G + LK ID+S+S+ L R+ DLS+ NLER
Sbjct: 596 KSLPSSFHAENLIELNLVGSNLEQLWTGVQHLVNLKRIDLSYSRHLTRIPDLSKAQNLER 655
Query: 399 TNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFP 458
L C++LA V SS++ N L L C +LRS P GI+ S + + C NL + P
Sbjct: 656 MELTTCQNLAAVSSSVQCLNKLVFLDLSDCTNLRSLPGGINLNSLKALVLTSCSNLAKLP 715
Query: 459 QISGNIIELKLWYTAIEEVPSSI 481
+ISG+I L L TAIEE+P +
Sbjct: 716 EISGDIRFLCLSGTAIEELPQRL 738
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 168/390 (43%), Positives = 237/390 (60%), Gaps = 17/390 (4%)
Query: 108 DLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDE 167
D ++L + Y G PLAL++LG LY++SK++W+ +L L+ I I VL+IS+D
Sbjct: 373 DFVQLCDRALNYTKGIPLALKILGRFLYNRSKKEWESELEKLRRIPNKEIQDVLRISFDG 432
Query: 168 LNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIHD-GLNILVSKSLITISDENELQMHD 226
L+ K+IF+DIACFFKG+D D++ ++ + + L+ KSL+TIS N+L MHD
Sbjct: 433 LDDNQKDIFLDIACFFKGQDKDYVIKLLKSCDFFPEIEIRNLIDKSLVTIS-YNKLCMHD 491
Query: 227 LLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNP 286
L+QEMG IVRQES K+PGKRSRLW ++DV +L N GT+ VEG+ L+LS + ++H +
Sbjct: 492 LIQEMGWEIVRQESIKDPGKRSRLWVNDDVIDMLTTNTGTEAVEGMVLNLSTLKELHFSV 551
Query: 287 QAFANMSNLRLLKFY---------MPKHND---IPIMSSKLHLDQGLEYLPEELRYLHWH 334
F M+ LR+L+FY + +HND P K HL ++L LR LHW
Sbjct: 552 NVFTKMNKLRVLRFYDAQIWGSSWIGRHNDRYKSPYTECKFHLSGDFKFLSNHLRSLHWD 611
Query: 335 EYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETP 394
Y LK LP +F PE L+EL + +S++EQ+W+G K KLK+I++SHSQ L++ D S P
Sbjct: 612 GYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQHLIKTPDFSGAP 671
Query: 395 NLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNL 454
L R L C L V SI L L +GC++L+SF IH S TI S C L
Sbjct: 672 KLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFSSSIHLESLQTITLSGCSKL 731
Query: 455 TEFPQISG---NIIELKLWYTAIEEVPSSI 481
+FP++ G N+ EL L TAI+ +P SI
Sbjct: 732 KKFPEVQGAMDNLPELSLKGTAIKGLPLSI 761
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495270|ref|XP_002276075.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 171/385 (44%), Positives = 243/385 (63%), Gaps = 12/385 (3%)
Query: 108 DLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDE 167
D +E+S+EV+ YA G PLALEVLGS L+ +K++W+++L+ LK I +VLK+SYD
Sbjct: 365 DFMEVSKEVIGYAQGLPLALEVLGSFLFSMTKEEWRNQLDKLKSTPNMKIQEVLKVSYDG 424
Query: 168 LNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIH-DGLNILVSKSLITISDENELQMHD 226
L+ + K I +DIACFFKGED D++ I D G+ L+ KSL+TIS NE+ MHD
Sbjct: 425 LDDKEKNILLDIACFFKGEDKDYVMEILDGCGFFSLSGIRALIDKSLVTISWSNEIMMHD 484
Query: 227 LLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKIND-IHLN 285
L+QEMG+ IVRQ+S +EPGKRSRLW H D+ VLKKN T+K+EGIFL+LS + + ++
Sbjct: 485 LIQEMGREIVRQQSLEEPGKRSRLWFHEDINGVLKKNTATEKIEGIFLNLSHLEEMLYFT 544
Query: 286 PQAFANMSNLRLLKFYMPKH-----NDIPIM-SSKLHLDQGLEYLPEELRYLHWHEYSLK 339
QA A M+ LRLLK Y K+ D M + K++ + ++ +LR L+++ YSLK
Sbjct: 545 TQALAGMNRLRLLKVYNSKNISRNFKDTSNMENCKVNFSKDFKFCYHDLRCLYFYGYSLK 604
Query: 340 MLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERT 399
LP DF P+NL+EL++PYS+++Q+WKG K LK++D+SHS+ L+ + NL+R
Sbjct: 605 SLPNDFNPKNLVELSMPYSRIKQLWKGIKVLANLKFMDLSHSKYLIETPNFRGVTNLKRL 664
Query: 400 NLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPI-TIDFSFCVNLTEFP 458
L C L V SS+ + NL L K C+ L+S P + + T S C EFP
Sbjct: 665 VLEGCVSLRKVHSSLGDLKNLIFLNLKNCQMLKSLPSSTCDLKSLETFILSGCSKFKEFP 724
Query: 459 QISGNIIELKLWYT---AIEEVPSS 480
+ G++ LK Y AI +PSS
Sbjct: 725 ENFGSLEMLKELYADEIAIGVLPSS 749
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | ||||||
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.760 | 0.282 | 0.413 | 1.3e-93 | |
| TAIR|locus:2155189 | 980 | AT5G49140 [Arabidopsis thalian | 0.783 | 0.384 | 0.407 | 6.2e-93 | |
| TAIR|locus:2162439 | 1008 | AT5G22690 [Arabidopsis thalian | 0.792 | 0.377 | 0.395 | 1e-87 | |
| TAIR|locus:2146243 | 900 | AT5G18360 [Arabidopsis thalian | 0.765 | 0.408 | 0.397 | 5e-87 | |
| TAIR|locus:2151491 | 1123 | AT5G46450 [Arabidopsis thalian | 0.777 | 0.333 | 0.383 | 7.1e-87 | |
| TAIR|locus:2136108 | 1095 | AT4G11170 [Arabidopsis thalian | 0.787 | 0.346 | 0.379 | 6.8e-84 | |
| TAIR|locus:2167457 | 1191 | AT5G36930 [Arabidopsis thalian | 0.765 | 0.308 | 0.371 | 7.7e-82 | |
| TAIR|locus:2039405 | 1109 | AT2G16870 [Arabidopsis thalian | 0.752 | 0.326 | 0.393 | 8e-82 | |
| TAIR|locus:2160472 | 1038 | AT5G41540 [Arabidopsis thalian | 0.846 | 0.392 | 0.356 | 2.7e-81 | |
| TAIR|locus:2115870 | 1234 | AT4G08450 [Arabidopsis thalian | 0.787 | 0.307 | 0.382 | 3.9e-81 |
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.3e-93, Sum P(3) = 1.3e-93
Identities = 154/372 (41%), Positives = 223/372 (59%)
Query: 111 ELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNS 170
ELS + V YA G PLAL VLGS LY +S+ +W+ L LK I +VL++SYD L+
Sbjct: 369 ELSVQAVNYASGLPLALRVLGSFLYRRSQIEWESTLARLKTYPHSDIMEVLRVSYDGLDE 428
Query: 171 EVKEIFIDIACFFKGEDIDFMTRIHD-DPMSIHDGLNILVSKSLITISDENELQMHDLLQ 229
+ K IF+ I+CF+ + +D++ ++ D + G+ IL KSLI + +++HDLL+
Sbjct: 429 QEKAIFLYISCFYNMKQVDYVRKLLDLCGYAAEIGITILTEKSLI-VESNGCVKIHDLLE 487
Query: 230 EMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAF 289
+MG+ +VRQ++ P +R LWD D+C++L +N GT VEGI L+LS+I+++ + +AF
Sbjct: 488 QMGRELVRQQAVNNPAQRLLLWDPEDICHLLSENSGTQLVEGISLNLSEISEVFASDRAF 547
Query: 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPEN 349
+SNL+LL FY + +++HL GL YLP +LRYL W Y LK +P F PE
Sbjct: 548 EGLSNLKLLNFYDLSFDG----ETRVHLPNGLSYLPRKLRYLRWDGYPLKTMPSRFFPEF 603
Query: 350 LIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLAC 409
L+EL + S +E++W G + LK +D+S + LV + DLS+ NLE NL C+ L
Sbjct: 604 LVELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVEVPDLSKATNLEELNLSYCQSLVE 663
Query: 410 VRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKL 469
V SI+N LS C L+ P GI S T+ S C +L FP+IS N L L
Sbjct: 664 VTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISWNTRRLYL 723
Query: 470 WYTAIEEVPSSI 481
T IEE+PSSI
Sbjct: 724 SSTKIEELPSSI 735
|
|
| TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 701 (251.8 bits), Expect = 6.2e-93, Sum P(2) = 6.2e-93
Identities = 156/383 (40%), Positives = 228/383 (59%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
+QN D +++ EV + PL L VLGS + KSK +WK +L L + + K+
Sbjct: 363 KQNVAPDDFMDVVVEVAELSGHLPLGLRVLGSHMRGKSKDRWKLELGRLTTSLDEKVEKI 422
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTR-IHDDPMSIHDGLNILVSKSLITISDE 219
LKISYD+L+ K +F+ IAC F GE+ID + + + + + + GL +L+ KSLI I+D+
Sbjct: 423 LKISYDDLHIRDKALFLHIACMFNGENIDLVKQMLVNSDLDVSLGLQLLLDKSLIQINDD 482
Query: 220 NELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKI 279
E+ MH LL +MG+ +V Q S+ EPGKR L++ + C +L N G++ V GI LD S+I
Sbjct: 483 REIVMHSLLLKMGKEVVCQHSS-EPGKRQFLFNTKETCNILSNNTGSEAVLGISLDTSEI 541
Query: 280 -NDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSL 338
ND+ ++ + F +M NL+ L+FY K ++ P S KLHL +GL YLP +R LHW Y +
Sbjct: 542 QNDVFMSERVFEDMRNLKFLRFYNKKIDENP--SLKLHLPRGLNYLPA-VRLLHWDSYPM 598
Query: 339 KMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLER 398
K +P F PE L+EL + +SKV ++W+G + LK ID+S S LV + DLS+ +LE
Sbjct: 599 KYIPSQFRPECLVELRMMHSKVVKLWEGTQTLAYLKTIDLSFSNNLVEVPDLSKAISLET 658
Query: 399 TNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFP 458
L C+ LA + SS+ N + L L CE L P I+ S +D C+ L FP
Sbjct: 659 LCLEGCQSLAELPSSVLNLHRLKWLRLTMCEKLEVIPLHINLASLEVLDMEGCLKLKSFP 718
Query: 459 QISGNIIELKLWYTAIEEVPSSI 481
IS NI + + T IEE+P SI
Sbjct: 719 DISKNIERIFMKNTGIEEIPPSI 741
|
|
| TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 1.0e-87, Sum P(2) = 1.0e-87
Identities = 153/387 (39%), Positives = 220/387 (56%)
Query: 95 YDSTESRQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISE 154
+ + RQN+ EL+ EV + PLAL VLGS L + K+ W D L L+ +
Sbjct: 358 FSQSAFRQNSPPPGFTELASEVSKRSGNLPLALNVLGSHLRGRDKEDWIDMLPRLRKGLD 417
Query: 155 PSIYKVLKISYDEL-NSEVKEIFIDIACFFKGEDIDFMTRI-HDDPMSIHDGLNILVSKS 212
I K+L++ YDEL N + K IF IAC F G +I ++ + D + + GL LV KS
Sbjct: 418 GKIEKILRVGYDELSNKDDKAIFRLIACLFNGAEISYIKLLLADSNLGVTIGLKNLVDKS 477
Query: 213 LITISDENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGI 272
LI I + ++MH +LQEMG+ IVR++S EPG+R L D D+ VL N GT KV GI
Sbjct: 478 LIRIGCDT-VEMHSMLQEMGREIVREQSIYEPGEREFLVDSTDILDVLNDNTGTKKVLGI 536
Query: 273 FLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLE-YLPEELRYL 331
D+S+I ++H++ +AF M NLR L+FY K ++LHL +G + + P +L+ L
Sbjct: 537 SFDMSEIEELHIHKRAFKRMPNLRFLRFY--KKLGKQSKEARLHLQEGFDKFFPPKLKLL 594
Query: 332 HWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLS 391
W +Y ++ +P +F L+ L + +SK+E++W+G + L+ + + S++L + DLS
Sbjct: 595 SWDDYPMRRMPSNFHAGYLVVLRMQHSKLEKLWQGVQPLTCLREMQLWGSKKLKEIPDLS 654
Query: 392 ETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFC 451
NLE L +C L + SSI+N N L L KGCE L P I+ S +D C
Sbjct: 655 LATNLETLYLNDCSSLVELPSSIKNLNKLWDLGMKGCEKLELLPTDINLKSLYRLDLGRC 714
Query: 452 VNLTEFPQISGNIIELKLWYTAIEEVP 478
L FP IS NI EL L TAIEEVP
Sbjct: 715 SRLKSFPDISSNISELYLNRTAIEEVP 741
|
|
| TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 149/375 (39%), Positives = 221/375 (58%)
Query: 110 LELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELN 169
+EL+ E+ A PLAL+VLGSSL SK + K L L+ I VL++ YD ++
Sbjct: 370 IELATEITKLAGYLPLALKVLGSSLRGMSKDEQKSALPRLRTSLNEDIRNVLRVGYDGIH 429
Query: 170 SEVKEIFIDIACFFKGEDIDFMTRI-HDDPMSIHDGLNILVSKSLITISDENE-LQMHDL 227
+ K IF+ IAC F GE++D++ +I + + GL +L S+SLI IS N + MH+L
Sbjct: 430 DKDKVIFLHIACLFNGENVDYVKQILASSGLDVTFGLQVLTSRSLIHISRCNRTITMHNL 489
Query: 228 LQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQ 287
L+++G+ IV ++S EPGKR L D +++ VL N GT V GI LD+SKIN++ LN +
Sbjct: 490 LEQLGREIVCEQSIAEPGKRQFLMDASEIYDVLADNTGTGAVLGISLDISKINELFLNER 549
Query: 288 AFANMSNLRLLKFYMPKHN-DIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346
AF M NL L+FY + D P +LHL +GL+YLP +LR LHW + + +P F
Sbjct: 550 AFGGMHNLLFLRFYKSSSSKDQP----ELHLPRGLDYLPRKLRLLHWDAFPMTSMPLSFC 605
Query: 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRD 406
P+ L+ +N+ S++E++W+G + LK +D+S S+ L + DLS+ N+E L C
Sbjct: 606 PQFLVVINIRESQLEKLWEGTQPLRSLKQMDLSKSENLKEIPDLSKAVNIEELCLSYCGS 665
Query: 407 LACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIE 466
L + SSI+N N L +L K C L P + S ++ C L FP+IS I
Sbjct: 666 LVMLPSSIKNLNKLVVLDMKYCSKLEIIPCNMDLESLSILNLDGCSRLESFPEISSKIGF 725
Query: 467 LKLWYTAIEEVPSSI 481
L L TAIEE+P+++
Sbjct: 726 LSLSETAIEEIPTTV 740
|
|
| TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 7.1e-87, Sum P(2) = 7.1e-87
Identities = 147/383 (38%), Positives = 221/383 (57%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
R+N+ +ELS EV A PL L+VLGS L + + W D + L+ + I K
Sbjct: 363 RKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYLRGRDIEDWMDMMPRLQNDLDGKIEKT 422
Query: 161 LKISYDELNSEVKE-IFIDIACFFKGEDI-DFMTRIHDDPMSIHDGLNILVSKSLITISD 218
L++SYD LN++ E IF IAC F GE + D + + + ++ GL LV KSLI +
Sbjct: 423 LRVSYDGLNNKKDEAIFRHIACLFNGEKVNDIKLLLAESDLDVNIGLKNLVDKSLIFVR- 481
Query: 219 ENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSK 278
E+ ++MH LLQ+MG+ IVR +S EPG+R L D + VL+ N GT KV GI LD+++
Sbjct: 482 EDTIEMHRLLQDMGKEIVRAQS-NEPGEREFLVDSKHIYDVLEDNTGTKKVLGIALDINE 540
Query: 279 INDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSL 338
+ ++++ AF M NL L FY + D+ HL +G ++LP +LR L W +Y L
Sbjct: 541 TDGLYIHESAFKGMRNLLFLNFYTKQKKDVT-----WHLSEGFDHLPPKLRLLSWEKYPL 595
Query: 339 KMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLER 398
+ +P +F PENL++L + SK+E++W G L+ +D+ S+ L + DLS NL++
Sbjct: 596 RCMPSNFRPENLVKLQMCESKLEKLWDGVHSLTGLRNMDLRGSENLKEIPDLSLATNLKK 655
Query: 399 TNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFP 458
++ NC L + S+I+N N L L + CE+L + P GI+ S ++ + C L FP
Sbjct: 656 LDVSNCTSLVELSSTIQNLNQLEELQMERCENLENLPIGINLESLYCLNLNGCSKLRSFP 715
Query: 459 QISGNIIELKLWYTAIEEVPSSI 481
IS I EL L TAIEE P+ +
Sbjct: 716 DISTTISELYLSETAIEEFPTEL 738
|
|
| TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 6.8e-84, Sum P(2) = 6.8e-84
Identities = 146/385 (37%), Positives = 221/385 (57%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
+Q++ S DL L+ E A PLAL VLGS + K K++W+ L LK + + KV
Sbjct: 359 KQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKV 418
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTR--IHDDPMSIHDGLNILVSKSLITISD 218
LK+ YD L+ K++F+ IAC F G+ +++ + I ++ + GL +L KSLI +
Sbjct: 419 LKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFE 478
Query: 219 ENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSK 278
++MH LL+++G+ +VR++S EPGKR L + + C VL N GT V GI LD+ +
Sbjct: 479 NGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCE 538
Query: 279 IND-IHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHL-DQGLEYLPEELRYLHWHEY 336
I + ++++ + F M NL LKFYM D M KL L ++GL YLP+ LR LHW Y
Sbjct: 539 IKEELYISEKTFEEMRNLVYLKFYMSSPIDDK-MKVKLQLPEEGLSYLPQ-LRLLHWDAY 596
Query: 337 SLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNL 396
L+ P F PE L+ELN+ +SK++++W G + L+ ++++ S+ L + +L E L
Sbjct: 597 PLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEATKL 656
Query: 397 ERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTE 456
R +L C L + SSI+N +L +L C+ L P I+ S + F +C L
Sbjct: 657 NRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQT 716
Query: 457 FPQISGNIIELKLWYTAIEEVPSSI 481
FP+IS NI L L TAI EVP S+
Sbjct: 717 FPEISTNIRLLNLIGTAITEVPPSV 741
|
|
| TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 7.7e-82, Sum P(2) = 7.7e-82
Identities = 145/390 (37%), Positives = 220/390 (56%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
R + ++ L+ S+EVV Y G PLA+EVLG+ L +S ++W+ L LK I +I
Sbjct: 362 RTSEPPKEFLQHSEEVVTYCAGLPLAVEVLGAFLIERSIREWESTLKLLKRIPNDNIQAK 421
Query: 161 LKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHDDPMSIHD-GLNILVSKSLITISDE 219
L+IS++ L E K++F+DIACFF G D ++ I D D L++L+ + LITIS
Sbjct: 422 LQISFNALTIEQKDVFLDIACFFIGVDSYYVACILDGCNLYPDIVLSLLMERCLITISGN 481
Query: 220 NELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKI 279
N + MHDLL++MG+ IVR+ S K+ G+RSRLW HNDV VLKK GT+ +EG+ L +
Sbjct: 482 N-IMMHDLLRDMGRQIVREISPKKCGERSRLWSHNDVVGVLKKKSGTNAIEGLSLKADVM 540
Query: 280 NDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK 339
+ + +AFA M LRLL+ ++ D L+ E+ P++LR+L WH +SL+
Sbjct: 541 DFQYFEVEAFAKMQELRLLEL---RYVD---------LNGSYEHFPKDLRWLCWHGFSLE 588
Query: 340 MLPFDFEPENLIELNLPYSKVEQIWKGE---KKAFKLKYIDISHSQQLVRMLDLSETPNL 396
P + E+L L+L YS +++ WK + + A +KY+D+SHS L D S PN+
Sbjct: 589 CFPINLSLESLAALDLQYSNLKRFWKAQSPPQPANMVKYLDLSHSVYLRETPDFSYFPNV 648
Query: 397 ERTNLLNCRDLACVRSSIENFNN-LSMLCFKGCESLRSFPRGIHFVSPI-TIDFSFCVNL 454
E+ L+NC+ L V SI + L +L C L P I+ + + ++ S C L
Sbjct: 649 EKLILINCKSLVLVHKSIGILDKKLVLLNLSSCIELDVLPEEIYKLKSLESLFLSNCSKL 708
Query: 455 TEFPQISGNIIELKLW---YTAIEEVPSSI 481
G + L +TA+ E+PS+I
Sbjct: 709 ERLDDALGELESLTTLLADFTALREIPSTI 738
|
|
| TAIR|locus:2039405 AT2G16870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 8.0e-82, Sum P(2) = 8.0e-82
Identities = 146/371 (39%), Positives = 210/371 (56%)
Query: 112 LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNSE 171
L+Q+V PL L V+GSSL K + +WK + L I + I VL++ Y+ L+
Sbjct: 371 LAQKVTWLCGNLPLGLRVVGSSLRGKKEDEWKSVIRRLDTIIDRDIEDVLRVGYESLHEN 430
Query: 172 VKEIFIDIACFFKGEDIDFM-TRIHDDPMSIHDGLNILVSKSLITISDENELQMHDLLQE 230
+ +F+ IA FF +D+D + + DD + I GL ILV+KSLI IS E++MH LLQ+
Sbjct: 431 EQSLFLHIAVFFNCKDVDLVKAMLADDNLDIAHGLKILVNKSLIYISTTGEIRMHKLLQQ 490
Query: 231 MGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAFA 290
+G+ + ++ EP KR L + ++CYVL+ +KGT V GI D S I+++ L+ +A
Sbjct: 491 VGRQAINRQ---EPWKRLILTNAQEICYVLENDKGTGVVSGISFDTSGISEVILSNRALR 547
Query: 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENL 350
MSNLR L Y +H+ IM H+ + +++ P LR LHW Y K LP F ENL
Sbjct: 548 RMSNLRFLSVYKTRHDGNNIM----HIPEDMKF-PPRLRLLHWEAYPSKSLPLGFCLENL 602
Query: 351 IELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACV 410
+ELN+ S++E++W+G + LK +D+S S L + DLS NLER L +CR L +
Sbjct: 603 VELNMKDSQLEKLWEGTQLLTNLKKMDLSRSVHLKELPDLSNATNLERLELCDCRALVEL 662
Query: 411 RSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLW 470
SI N + L L C SL P I+ S I + C L FP S NI L L
Sbjct: 663 PKSIGNLHKLENLVMANCISLEVIPTHINLASLEHITMTGCSRLKTFPDFSTNIERLLLI 722
Query: 471 YTAIEEVPSSI 481
T++EEVP+SI
Sbjct: 723 GTSVEEVPASI 733
|
|
| TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 2.7e-81, Sum P(2) = 2.7e-81
Identities = 150/421 (35%), Positives = 223/421 (52%)
Query: 63 TFEKAFVHHENNFPDKVQKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVVCYADG 122
T K + ++NNF V E S + Q + RD E V Y G
Sbjct: 328 TIMKTLLVNDNNFYHVGYPTNKVALEILCLSAF------QKSFPRDGFEELARKVAYLCG 381
Query: 123 N-PLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNSEVKEIFIDIAC 181
N PL L V+GSSL +SK +WK + + L+ + I VLK +Y++L+ + + +F+ IAC
Sbjct: 382 NLPLCLSVVGSSLRGQSKHRWKLQSDRLETSLDRKIEDVLKSAYEKLSKKEQVLFLHIAC 441
Query: 182 FFKGEDIDFM-TRIHDDPMSIHDGLNILVSKSLITISDENELQMHDLLQEMGQTIVRQES 240
FF I + T + D + + +GL L K L+ IS + + MH LLQ++G+ IV ++S
Sbjct: 442 FFNNTYISVVKTLLADSNLDVRNGLKTLADKCLVHISRVDRIFMHPLLQQLGRYIVLEQS 501
Query: 241 AKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKF 300
EP KR L + ++ VL GT V GI D+SK+++ ++ +AF M NLR L+
Sbjct: 502 -DEPEKRQFLVEAEEIRDVLANETGTGSVLGISFDMSKVSEFSISGRAFEAMRNLRFLRI 560
Query: 301 YMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKV 360
Y + L + + ++YLP LR LHW Y K LP F+PE L+ L++P+S +
Sbjct: 561 YRRSSSK----KVTLRIVEDMKYLPR-LRLLHWEHYPRKSLPRRFQPERLVVLHMPHSNL 615
Query: 361 EQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNL 420
E++W G + LK ID+S S++L + +LS NLE L+ C L + SSI N L
Sbjct: 616 EKLWGGIQSLTNLKNIDLSFSRKLKEIPNLSNATNLETLTLIKCSSLVELPSSISNLQKL 675
Query: 421 SMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSS 480
L GC+ L+ P I+ VS + + C L+ FP IS NI L + T IEEVP S
Sbjct: 676 KALMMFGCKMLKVVPTNINLVSLEKVSMTLCSQLSSFPDISRNIKSLDVGKTKIEEVPPS 735
Query: 481 I 481
+
Sbjct: 736 V 736
|
|
| TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.9e-81, Sum P(2) = 3.9e-81
Identities = 147/384 (38%), Positives = 210/384 (54%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
R+++ +EL+ +VV A PL L +LGS L +SK+ W D + L+ + I K
Sbjct: 361 RKDSPPNGFIELAYDVVKRAGSLPLGLNILGSYLRGRSKEDWIDMMPGLRNKLDGKIQKT 420
Query: 161 LKISYDELNSEVKE-IFIDIACFFKGEDI-DFMTRIHDDPMSIHDGLNILVSKSLITISD 218
L++SYD L SE + IF IAC F E D + D +++ +GL LV KSLI I
Sbjct: 421 LRVSYDGLASEDDQAIFRHIACIFNFEACSDIKKLLEDSGLNVTNGLINLVDKSLIRIEP 480
Query: 219 ENE-LQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLS 277
+ + ++MH LLQE + I+R +S +PGKR L D D+ VL GT KV GI LD+
Sbjct: 481 KQKTVEMHCLLQETAREIIRAQSFDDPGKREFLVDGKDIADVLDNCSGTRKVLGISLDMD 540
Query: 278 KINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS 337
+I ++HL AF M NLR LK Y + +I KL L + YLP LR L W +
Sbjct: 541 EIEELHLQVDAFKKMLNLRFLKLYT--NTNISEKEDKLLLPKEFNYLPNTLRLLSWQRFP 598
Query: 338 LKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLE 397
++ +P DF P+ L++L +P SK+E++W G LK +++ S+ L +LS NLE
Sbjct: 599 MRCMPSDFFPKYLVKLLMPGSKLEKLWDGVMPLQCLKNMNLFGSENLKEFPNLSLATNLE 658
Query: 398 RTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEF 457
+L C L V S+I N N L+ L GC +L FP ++ S + + C L F
Sbjct: 659 TLSLGFCLSLVEVPSTIGNLNKLTYLNMSGCHNLEKFPADVNLKSLSDLVLNGCSRLKIF 718
Query: 458 PQISGNIIELKLWYTAIEEVPSSI 481
P IS NI EL L A+EE PS++
Sbjct: 719 PAISSNISELCLNSLAVEEFPSNL 742
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 481 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 4e-81 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 8e-26 | |
| smart00255 | 140 | smart00255, TIR, Toll - interleukin 1 - resistance | 2e-22 | |
| pfam01582 | 135 | pfam01582, TIR, TIR domain | 3e-22 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 6e-17 | |
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 1e-09 | |
| PLN03194 | 187 | PLN03194, PLN03194, putative disease resistance pr | 7e-06 | |
| pfam13676 | 102 | pfam13676, TIR_2, TIR domain | 0.001 | |
| pfam07725 | 20 | pfam07725, LRR_3, Leucine Rich Repeat | 0.001 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 4e-81
Identities = 157/386 (40%), Positives = 222/386 (57%), Gaps = 12/386 (3%)
Query: 101 RQNNRSRDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKV 160
++N+ +EL+ EV A PL L VLGS L + K+ W D L L+ + I K
Sbjct: 366 KKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKT 425
Query: 161 LKISYDELNSEVKE-IFIDIACFFKGEDI-DFMTRIHDDPMSIHDGLNILVSKSLITISD 218
L++SYD LN++ + IF IAC F GE + D + + + ++ GL LV KSLI +
Sbjct: 426 LRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR- 484
Query: 219 ENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSK 278
E+ ++MH LLQEMG+ IVR +S EPG+R L D D+C VL+ N GT KV GI LD+ +
Sbjct: 485 EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543
Query: 279 INDIHLNPQAFANMSNLRLLKFYMPK---HNDIPIMSSKLHLDQGLEYLPEELRYLHWHE 335
I+++H++ AF M NL LKFY K ++ + HL +G +YLP +LR L W +
Sbjct: 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEV-----RWHLPEGFDYLPPKLRLLRWDK 598
Query: 336 YSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPN 395
Y L+ +P +F PENL++L + SK+E++W G L+ ID+ S+ L + DLS N
Sbjct: 599 YPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATN 658
Query: 396 LERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLT 455
LE L +C L + SSI+ N L L CE+L P GI+ S ++ S C L
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK 718
Query: 456 EFPQISGNIIELKLWYTAIEEVPSSI 481
FP IS NI L L TAIEE PS++
Sbjct: 719 SFPDISTNISWLDLDETAIEEFPSNL 744
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 8e-26
Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQ 60
P + AI S I++++FSK+YASS WCLNEL++I+ CK+ GQ+VIPVFY +DPS VRKQ
Sbjct: 57 PELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQ 116
Query: 61 RGTFEKAFVHH-ENNFPDKVQKWRDVLTEASNFSGYDST 98
G F +AF +N D+ +W+ LT+ +N GY S
Sbjct: 117 TGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQ 155
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-22
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 3 ISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKK-MNGQIVIPVFYQVDPSDVRKQR 61
I AIE S I+I++ S +YA S+WCL+ELV L+ G VIP+FY+V PSDVRKQ
Sbjct: 48 IDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQP 107
Query: 62 GTFEKAFVHHENNFPD--KVQKWRDVLTEASN 91
G F K F + +P+ K Q W+ L +
Sbjct: 108 GKFRKVFKKNYLKWPEDEKEQFWKKALYAVPS 139
|
Length = 140 |
| >gnl|CDD|216585 pfam01582, TIR, TIR domain | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 3e-22
Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKK--MNGQIVIPVFYQVDPSDVR 58
+ AIE S +I+IFS +YASS+WCL+ELV+I+ C ++++P+FY+VDPSDVR
Sbjct: 44 ENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVR 103
Query: 59 KQRGTFEKAFVHHE---NNFPDKVQKWRDVLT 87
Q G F KAF+ + DK++ W+ L
Sbjct: 104 PQSGKFGKAFLKTLKWSGDKEDKIRFWKKALY 135
|
The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 6e-17
Identities = 58/176 (32%), Positives = 78/176 (44%), Gaps = 33/176 (18%)
Query: 307 DIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK 365
DI S L LD+ +E P LR ENL EL L K E++W+
Sbjct: 722 DISTNISWLDLDETAIEEFPSNLRL-----------------ENLDELILCEMKSEKLWE 764
Query: 366 GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCF 425
+ L+ ML +P+L R L + L + SSI+N + L L
Sbjct: 765 RVQPL-----------TPLMTML----SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809
Query: 426 KGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSSI 481
+ C +L + P GI+ S ++D S C L FP IS NI +L L T IEEVP I
Sbjct: 810 ENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWI 865
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 108 DLLELSQEVVCYADGNPLALEVLGSSLYHKSK--------QQWKDKLNNLKLISEPSIYK 159
+L E+++E+V G PLAL+VLG L KS +Q ++L ++E +
Sbjct: 179 ELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNE--VLS 236
Query: 160 VLKISYDELNSEVKEIFIDIACFFKGEDI 188
+L +SYD L +K F+ +A F + +I
Sbjct: 237 ILSLSYDNLPMHLKRCFLYLALFPEDYNI 265
|
Length = 285 |
| >gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 7e-06
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 3 ISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVR-KQR 61
I++AI + + +FS Y S +CL+EL I++ KK VIP+F V PS +R
Sbjct: 74 INSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLRVVDN 129
Query: 62 GTFEKAFVHHENNFPDKVQKWRDVLTEA 89
GT ++++++ L EA
Sbjct: 130 GTCP----------DEEIRRFNWALEEA 147
|
Length = 187 |
| >gnl|CDD|222311 pfam13676, TIR_2, TIR domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDV 57
I A+ ++D+ +++ S Y +S WC E L+ K +IPV ++ ++
Sbjct: 41 DEIEEALRSADVVLVLLSPAYLASPWCRAEWGAALERGK----RLIPVR--LEDCEL 91
|
This is a family of bacterial Toll-like receptors. Length = 102 |
| >gnl|CDD|191828 pfam07725, LRR_3, Leucine Rich Repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.001
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 349 NLIELNLPYSKVEQIWKGEK 368
NL+ELNL YSK+E++W+G K
Sbjct: 1 NLVELNLRYSKLEKLWEGTK 20
|
This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model. Length = 20 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN03194 | 187 | putative disease resistance protein; Provisional | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.72 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.71 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.63 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.61 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.59 | |
| PF01582 | 141 | TIR: TIR domain; InterPro: IPR000157 In Drosophila | 99.59 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.56 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.52 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.45 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.43 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.42 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.38 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.35 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.35 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.33 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.33 | |
| smart00255 | 140 | TIR Toll - interleukin 1 - resistance. | 99.3 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.28 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.27 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.09 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.02 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.96 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.9 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.9 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.9 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.89 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.87 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.84 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.79 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.78 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.72 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.68 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.64 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.62 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.53 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.53 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.4 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.4 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.31 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.31 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.3 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.97 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.94 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.93 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.92 | |
| PF13676 | 102 | TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_ | 97.78 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.76 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.7 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.42 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.38 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.31 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.27 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.21 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.15 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.11 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.99 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 96.54 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.49 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 96.17 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.87 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.47 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.3 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.2 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.13 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.73 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.21 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.58 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.36 | |
| PF07725 | 20 | LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le | 93.34 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.33 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.44 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 90.5 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.2 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.2 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 86.22 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 85.96 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 85.69 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 85.69 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 85.18 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 85.14 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 83.37 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 82.48 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 82.18 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-89 Score=778.88 Aligned_cols=476 Identities=43% Similarity=0.727 Sum_probs=445.7
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCc-hhh
Q 036657 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFP-DKV 79 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~-~~v 79 (481)
|+|++||++|||||||||+|||+|+||||||++||||++..|++|+||||+|||||||+|+|.||+||.+|+.+.. +++
T Consensus 57 ~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~ 136 (1153)
T PLN03210 57 PELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEK 136 (1153)
T ss_pred HHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999998766 899
Q ss_pred hhHHHHHHHhhccCCCCCCCCh----------------------------------------------------------
Q 036657 80 QKWRDVLTEASNFSGYDSTESR---------------------------------------------------------- 101 (481)
Q Consensus 80 ~~w~~al~~~~~~~g~~~~~~~---------------------------------------------------------- 101 (481)
++||+||++||+++||++.++.
T Consensus 137 ~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~g 216 (1153)
T PLN03210 137 IQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSS 216 (1153)
T ss_pred HHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCC
Confidence 9999999999999999987653
Q ss_pred -------------------------------------h--------------h--------------------------h
Q 036657 102 -------------------------------------Q--------------N--------------------------N 104 (481)
Q Consensus 102 -------------------------------------q--------------~--------------------------~ 104 (481)
+ + +
T Consensus 217 GiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~k 296 (1153)
T PLN03210 217 GIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHR 296 (1153)
T ss_pred CCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCC
Confidence 0 0 0
Q ss_pred C-------------------------------------------------------------------------ChhHHH
Q 036657 105 R-------------------------------------------------------------------------SRDLLE 111 (481)
Q Consensus 105 r-------------------------------------------------------------------------S~~~~~ 111 (481)
| .+++++
T Consensus 297 rvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~ 376 (1153)
T PLN03210 297 KVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFME 376 (1153)
T ss_pred eEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHH
Confidence 0 047899
Q ss_pred HHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCCchhhHHHHHhccccCch-hhHHHhhhhccCCCCCCHHH
Q 036657 112 LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNS-EVKEIFIDIACFFKGEDIDF 190 (481)
Q Consensus 112 i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~~~~i~~~L~lSYd~L~~-~~K~cFl~~a~Fp~~~~~~~ 190 (481)
++++||++|+|+||||+++|+.|++++..+|++++++|++.++.+|.++|++|||+|++ .+|.||+||||||.+++++.
T Consensus 377 l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~ 456 (1153)
T PLN03210 377 LASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND 456 (1153)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH
Confidence 99999999999999999999999999999999999999998889999999999999987 58999999999999999999
Q ss_pred HHHHhcCC-CcccccHHHHhhCcceeecCCCceehhHHHHHHHHHHhhccccCCCCCcccccccchhhhhhhcCCCCcce
Q 036657 191 MTRIHDDP-MSIHDGLNILVSKSLITISDENELQMHDLLQEMGQTIVRQESAKEPGKRSRLWDHNDVCYVLKKNKGTDKV 269 (481)
Q Consensus 191 l~~~~~~~-~~~~~~~~~L~~r~li~~~~~~~~~mHdll~d~~~~i~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~v 269 (481)
+..|++++ +.++.+++.|++||||++. .++++|||++|+||++|+++++ .+|++|+|+|.++++++++..++|++++
T Consensus 457 v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v 534 (1153)
T PLN03210 457 IKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKV 534 (1153)
T ss_pred HHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCccccee
Confidence 99999988 8899999999999999998 7899999999999999999998 7899999999999999999999999999
Q ss_pred eeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCC
Q 036657 270 EGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPEN 349 (481)
Q Consensus 270 ~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~ 349 (481)
++|+++.+...+..+...+|.+|++|++|.++.+... .......++|+++..+|.+||+|+|.+|+++.+|..|.+.+
T Consensus 535 ~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~--~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~ 612 (1153)
T PLN03210 535 LGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWD--QKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPEN 612 (1153)
T ss_pred eEEEeccCccceeeecHHHHhcCccccEEEEeccccc--ccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccC
Confidence 9999999988888899999999999999999866421 11223567899999999899999999999999999999999
Q ss_pred ceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCC
Q 036657 350 LIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCE 429 (481)
Q Consensus 350 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~ 429 (481)
|++|+|++|+++.+|.++..+++|+.|+|++|..++.+|+++.+++|++|++++|..+..+|.+++++++|+.|++++|+
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCCC
Q 036657 430 SLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 430 ~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~s 480 (481)
.++.+|..+++++|+.|++++|+.++.+|...++|++|++++|.++.+|.+
T Consensus 693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 693 NLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc
Confidence 999999988999999999999999999999999999999999999999975
|
syringae 6; Provisional |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=365.24 Aligned_cols=363 Identities=25% Similarity=0.277 Sum_probs=244.6
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCC-ChhHHHHHHHHHhcC-----C--chhhHHHHHhccccCchhhHHHhhh
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHK-SKQQWKDKLNNLKLI-----S--EPSIYKVLKISYDELNSEVKEIFID 178 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k-~~~~W~~~l~~l~~~-----~--~~~i~~~L~lSYd~L~~~~K~cFl~ 178 (481)
+.++++|++||++|+|||||++|+|+.|+.| +.++|+.+.+.++.. + .+.|+++|++|||.||+++|.||||
T Consensus 339 ~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLy 418 (889)
T KOG4658|consen 339 PDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLY 418 (889)
T ss_pred ccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHh
Confidence 6689999999999999999999999999999 889999999998765 2 5689999999999999889999999
Q ss_pred hccCCCCCCHH--HHHHHhcCC-C------------cccccHHHHhhCcceeecCC----CceehhHHHHHHHHHHhh--
Q 036657 179 IACFFKGEDID--FMTRIHDDP-M------------SIHDGLNILVSKSLITISDE----NELQMHDLLQEMGQTIVR-- 237 (481)
Q Consensus 179 ~a~Fp~~~~~~--~l~~~~~~~-~------------~~~~~~~~L~~r~li~~~~~----~~~~mHdll~d~~~~i~~-- 237 (481)
||+||+||+++ +++..|+++ | .++.++.+|+.++|++..++ .+|+|||++||||.+++.
T Consensus 419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccc
Confidence 99999998765 488888776 5 35667999999999998742 579999999999999999
Q ss_pred ---cccc-CCC-------------CCcccccccchhhhhhhcCCCCcceeeeeecCCcccccccChHhhccCCCCcEEEE
Q 036657 238 ---QESA-KEP-------------GKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKF 300 (481)
Q Consensus 238 ---~e~~-~~~-------------~~~~rl~~~~~~~~~l~~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l 300 (481)
+|.. ... ...+|+.................+++++.+..+......++.+.|..|+.||+|++
T Consensus 499 ~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 499 GKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred cccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEEC
Confidence 3321 011 11122211111111112222233455555543321134456677888888888888
Q ss_pred eCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcc-cccccccCCCCCcEEec
Q 036657 301 YMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDI 378 (481)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L 378 (481)
++|. ....+|..++.|. +||||+++++.++.+|..+. ++.|.+|++..+... .+|.....|.+||+|.+
T Consensus 579 s~~~--------~l~~LP~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 579 SGNS--------SLSKLPSSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred CCCC--------ccCcCChHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 8766 3677888888888 88888888888888888887 888888888877543 33444555888888888
Q ss_pred cCCC-CCc--ccCCCCCCCCCCEEeccCC-------------------------CCCccccccccCCCCCCEEeeeCCCC
Q 036657 379 SHSQ-QLV--RMLDLSETPNLERTNLLNC-------------------------RDLACVRSSIENFNNLSMLCFKGCES 430 (481)
Q Consensus 379 s~~~-~l~--~lp~~~~l~~L~~L~L~~c-------------------------~~l~~lp~~i~~L~~L~~L~l~~c~~ 430 (481)
.... ... .+-++..+.+|+.+....+ ......+.+++.+.+|+.|.+.+|..
T Consensus 650 ~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 650 PRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred eccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 7653 000 0111333334443333221 12233455677778888888887765
Q ss_pred CccCCCC----C--C-CCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCC
Q 036657 431 LRSFPRG----I--H-FVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 431 l~~lp~~----~--~-l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP 478 (481)
....... . . ++++..+.+.+|..++.+-. +.++|+.|++.+++..+.|
T Consensus 730 ~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 730 SEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred chhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 4321110 0 1 23444445555554444331 4566777777755554433
|
|
| >PLN03194 putative disease resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-30 Score=225.39 Aligned_cols=85 Identities=32% Similarity=0.562 Sum_probs=76.2
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccc-cCcHHHHHHHHHhcCchhh
Q 036657 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQ-RGTFEKAFVHHENNFPDKV 79 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q-~g~~~~~~~~~~~~~~~~v 79 (481)
|+|.+||++|+++|||||+|||+|+|||+||++|++|+ ++|+||||+|||+|||+| .|.+ ..++|
T Consensus 72 ~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v 137 (187)
T PLN03194 72 DKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEI 137 (187)
T ss_pred HHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHH
Confidence 46899999999999999999999999999999999984 479999999999999997 5542 12789
Q ss_pred hhHHHHHHHhhccCCCCCCC
Q 036657 80 QKWRDVLTEASNFSGYDSTE 99 (481)
Q Consensus 80 ~~w~~al~~~~~~~g~~~~~ 99 (481)
++||+||++||+++||+++.
T Consensus 138 ~~Wr~AL~~va~l~G~~~~~ 157 (187)
T PLN03194 138 RRFNWALEEAKYTVGLTFDS 157 (187)
T ss_pred HHHHHHHHHHhccccccCCC
Confidence 99999999999999998764
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=186.61 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=115.2
Q ss_pred CCCCCcccccccchhhhhhhcCC--CCcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC
Q 036657 242 KEPGKRSRLWDHNDVCYVLKKNK--GTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ 319 (481)
Q Consensus 242 ~~~~~~~rl~~~~~~~~~l~~~~--~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~ 319 (481)
.+|..+.+.|...+.+....... ....++.+.+..... ....+..|..+++|++|++++|.+ ...+|.
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~~--------~~~ip~ 111 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQL--------SGPIPD 111 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCcc--------CCcCCh
Confidence 34555666776443222222111 133566665554332 223366788888999999988874 345666
Q ss_pred ccc-cccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCC
Q 036657 320 GLE-YLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNL 396 (481)
Q Consensus 320 ~l~-~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L 396 (481)
.+. .+. +|++|++++|.+....+...+.+|++|+|++|.+. .+|..++.+++|++|++++|.....+|. ++++++|
T Consensus 112 ~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 112 DIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred HHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 554 455 77777777776653222223566666666666665 4566666666666666666643345554 5666666
Q ss_pred CEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCC
Q 036657 397 ERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQ 459 (481)
Q Consensus 397 ~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~ 459 (481)
++|++++|.....+|..++++++|++|++++|.-...+|..+. +++|++|++++|.....+|.
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 6666666554445555555566666666555433334444442 55555555555442233443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-17 Score=185.68 Aligned_cols=88 Identities=41% Similarity=0.583 Sum_probs=81.0
Q ss_pred CCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcC
Q 036657 394 PNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTA 473 (481)
Q Consensus 394 ~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~ 473 (481)
++|+.|++++|..+.++|.+++++++|+.|++++|+.++.+|..+++++|+.|++++|+++..+|....+|+.|+|++|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 46778888888888889999999999999999999999999998899999999999999999999998999999999999
Q ss_pred CccCCCCC
Q 036657 474 IEEVPSSI 481 (481)
Q Consensus 474 l~~lP~si 481 (481)
|+++|.+|
T Consensus 858 i~~iP~si 865 (1153)
T PLN03210 858 IEEVPWWI 865 (1153)
T ss_pred CccChHHH
Confidence 99999753
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.7e-16 Score=173.96 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=77.4
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CCCceEEEcCCCCcc-c
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYSKVE-Q 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~~i~-~ 362 (481)
+..+..+++|++|++++|.+ ...+|..+..++ +|++|++++|.+. .+|..+. +.+|++|++++|++. .
T Consensus 157 p~~~~~l~~L~~L~L~~n~l--------~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVL--------VGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred ChHHhcCCCCCEEECccCcc--------cccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 34455566666666655543 334555555555 5555555555543 3444443 555555555555554 3
Q ss_pred ccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC-CC
Q 036657 363 IWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI-HF 440 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l 440 (481)
+|..+..+++|++|++++|.....+|. ++++++|++|++++|.....+|.+++++++|++|++++|.-...+|..+ ++
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 455555555555555555532233443 5555555555555543333444445555555555555433222333332 24
Q ss_pred CCCcEEEeecC
Q 036657 441 VSPITIDFSFC 451 (481)
Q Consensus 441 ~~L~~L~l~~c 451 (481)
++|+.|++++|
T Consensus 308 ~~L~~L~l~~n 318 (968)
T PLN00113 308 QNLEILHLFSN 318 (968)
T ss_pred CCCcEEECCCC
Confidence 44444444443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-17 Score=165.01 Aligned_cols=205 Identities=15% Similarity=0.232 Sum_probs=158.3
Q ss_pred cCCCCcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC
Q 036657 262 KNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML 341 (481)
Q Consensus 262 ~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l 341 (481)
.-+....+|++.+..++.+...++++ +-+|..|.+|+++.|. ....|.++.+-. ++-+|+++.|.+.++
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNq---------L~EvP~~LE~AK-n~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQ---------LREVPTNLEYAK-NSIVLNLSYNNIETI 141 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhh---------hhhcchhhhhhc-CcEEEEcccCccccC
Confidence 33445566666665555545555444 4568999999999998 677888888877 888999999999999
Q ss_pred CCCCC--CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcc--cCCCCCCCCCCEEeccCCC-CCccccccccC
Q 036657 342 PFDFE--PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVR--MLDLSETPNLERTNLLNCR-DLACVRSSIEN 416 (481)
Q Consensus 342 P~~~~--l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~--lp~~~~l~~L~~L~L~~c~-~l~~lp~~i~~ 416 (481)
|.... +..|-.|||++|+++.+|..+..|.+|+.|+|++|. +.. +-.+..+++|++|.+++.. -+..+|.++..
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 98844 889999999999999999999999999999999986 221 2225567778888888743 34568888888
Q ss_pred CCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCccCCCC
Q 036657 417 FNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 417 L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
|.+|+.++++ |+++..+|... ++++|+.|+||+ ++++++.-. -.+|++|+|+.|+++.+|+.
T Consensus 221 l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 221 LHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred hhhhhhcccc-ccCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 8899999998 78888888866 588888888888 457776642 34678888888888888864
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-17 Score=139.81 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=99.1
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccccccc
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
-.|.++..|.++.|. ...+|..+..+. +|..|++.+|.++.+|.++. +++|+.|++.-|++..+|.+++
T Consensus 30 f~~s~ITrLtLSHNK---------l~~vppnia~l~-nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK---------LTVVPPNIAELK-NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cchhhhhhhhcccCc---------eeecCCcHHHhh-hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345556666666665 455666666666 66666666666666666655 6666666666666666666666
Q ss_pred CCCCCcEEeccCCCCCc--ccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCc
Q 036657 369 KAFKLKYIDISHSQQLV--RMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPI 444 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~--~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~ 444 (481)
.++-|..||+++|. +. .+|. |-.++.|+-|++++ +..+.+|..+|++++|+.|.+++ +.+-++|..++ ++.|+
T Consensus 100 s~p~levldltynn-l~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 100 SFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLR 176 (264)
T ss_pred CCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHH
Confidence 66666666666652 32 3454 55566666666666 45566666666666666666665 45666666664 66666
Q ss_pred EEEeecCCCCCccCCccccc
Q 036657 445 TIDFSFCVNLTEFPQISGNI 464 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~~~~~L 464 (481)
+|++.| +.+.-+|..++++
T Consensus 177 elhiqg-nrl~vlppel~~l 195 (264)
T KOG0617|consen 177 ELHIQG-NRLTVLPPELANL 195 (264)
T ss_pred HHhccc-ceeeecChhhhhh
Confidence 666666 3366666544444
|
|
| >PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-16 Score=135.28 Aligned_cols=86 Identities=37% Similarity=0.623 Sum_probs=76.1
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCC--CeEEeEEeecCCcccc-cccCcHHHHHHHHHhcCc--
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNG--QIVIPVFYQVDPSDVR-KQRGTFEKAFVHHENNFP-- 76 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~--~~v~pvfy~v~p~~v~-~q~g~~~~~~~~~~~~~~-- 76 (481)
++.+||++||++|||||+||++|.||++||..++++....+ ++|+||||+|.+++|+ +|+|.|+.+|..+.....
T Consensus 47 ~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~ 126 (141)
T PF01582_consen 47 NIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDD 126 (141)
T ss_dssp HHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSG
T ss_pred hhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCC
Confidence 47889999999999999999999999999999999987655 8999999999999999 799999999988777655
Q ss_pred ---hhhhhHHHHHH
Q 036657 77 ---DKVQKWRDVLT 87 (481)
Q Consensus 77 ---~~v~~w~~al~ 87 (481)
++...|++++.
T Consensus 127 ~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 127 SREDRSWFWKKLRY 140 (141)
T ss_dssp GGGGHHHHHHHHHH
T ss_pred CccHHHHHHHHHhc
Confidence 35779999875
|
In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A .... |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-17 Score=162.07 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=76.1
Q ss_pred CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCC
Q 036657 341 LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFN 418 (481)
Q Consensus 341 lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~ 418 (481)
+|.++. +.||..+|++.|++..+|+.+.++++|+.|+||+|+ ++++.. .+...+|++|+++. +.+..+|..+..|+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLT 291 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhcccc-chhccchHHHhhhH
Confidence 444444 555666666666666666666666666666666653 555443 44455555666655 44555666666666
Q ss_pred CCCEEeeeCCCC--CccCCCCCC-CCCCcEEEeecCCCCCccCCcc---cccceEeeeCcCCccCCCC
Q 036657 419 NLSMLCFKGCES--LRSFPRGIH-FVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 419 ~L~~L~l~~c~~--l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l~~lP~s 480 (481)
+|+.|.+.+ ++ ...+|++++ +.+|+.+..++ ++|+-+|+.+ +.|+.|.|++|++-.+|..
T Consensus 292 kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 292 KLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred HHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccceeechhh
Confidence 666665553 22 234566554 66666666655 3455566532 3456666666666666553
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-16 Score=135.84 Aligned_cols=150 Identities=17% Similarity=0.262 Sum_probs=84.3
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNC 404 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c 404 (481)
++..|.+++|.+..+|+.+. +.+|++|++.+|+++++|..+..|++||+|+++-|+ +..+|. |+.+|.|+.|++.++
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhcccc
Confidence 45555566666666665554 666666666666666666666666666666665553 555555 666666666666552
Q ss_pred C-CCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCcccc---cceEeeeCcCCccCCC
Q 036657 405 R-DLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQISGN---IIELKLWYTAIEEVPS 479 (481)
Q Consensus 405 ~-~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~~~~---L~~L~L~~~~l~~lP~ 479 (481)
+ +-..+|..|..++.|+.|.+++ +..+-+|..++ +++|+.|.+.++ .+-++|..++. |++|++.||+++.+|+
T Consensus 113 nl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 2 1123555555555566666554 45555555553 666666666552 35555554333 3556666666665555
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-14 Score=140.23 Aligned_cols=92 Identities=29% Similarity=0.528 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCC-ChhHHHHHHHHHhcCC------chhhHHHHHhccccCchhhHHHhhhh
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHK-SKQQWKDKLNNLKLIS------EPSIYKVLKISYDELNSEVKEIFIDI 179 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k-~~~~W~~~l~~l~~~~------~~~i~~~L~lSYd~L~~~~K~cFl~~ 179 (481)
+.+.+++++|+++|+|+|||++++|+.|+.+ +..+|+++++++.+.. ...+..++.+||+.||++.|+||+||
T Consensus 179 ~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L 258 (287)
T PF00931_consen 179 EDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYL 258 (287)
T ss_dssp TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhC
Confidence 3456789999999999999999999999766 8899999998866442 57899999999999999999999999
Q ss_pred ccCCCCCC--HHHHHHHhcCC
Q 036657 180 ACFFKGED--IDFMTRIHDDP 198 (481)
Q Consensus 180 a~Fp~~~~--~~~l~~~~~~~ 198 (481)
|+||.++. .+.++++|.++
T Consensus 259 ~~f~~~~~i~~~~li~lW~~e 279 (287)
T PF00931_consen 259 SIFPEGVPIPRERLIRLWVAE 279 (287)
T ss_dssp GGSGTTS-EEHHHHHHHHTT-
T ss_pred cCCCCCceECHHHHHHHHHHC
Confidence 99999976 56699999886
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-13 Score=146.46 Aligned_cols=165 Identities=17% Similarity=0.246 Sum_probs=82.5
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
.+|+.|++++|.+ ..+|.. ++.+|+.|++++|.+..+|..+ +.+|++|++++|++..+|..+. .+
T Consensus 220 ~nL~~L~Ls~N~L---------tsLP~~---l~~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~--~s 284 (754)
T PRK15370 220 GNIKTLYANSNQL---------TSIPAT---LPDTIQEMELSINRITELPERL-PSALQSLDLFHNKISCLPENLP--EE 284 (754)
T ss_pred cCCCEEECCCCcc---------ccCChh---hhccccEEECcCCccCcCChhH-hCCCCEEECcCCccCccccccC--CC
Confidence 3666666666652 234432 2335666666666666666544 2456666666666666665443 35
Q ss_pred CcEEeccCCCCCcccCC-CC-------------------CCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCc
Q 036657 373 LKYIDISHSQQLVRMLD-LS-------------------ETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLR 432 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~-~~-------------------~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~ 432 (481)
|++|++++| .+..+|. +. -.++|+.|++++| .+..+|.++. ++|+.|++++| .+.
T Consensus 285 L~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N-~L~ 359 (754)
T PRK15370 285 LRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPASLP--PELQVLDVSKN-QIT 359 (754)
T ss_pred CcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChhhc--CcccEEECCCC-CCC
Confidence 666666666 3555553 21 0123444444442 2333443332 34555555542 344
Q ss_pred cCCCCCCCCCCcEEEeecCCCCCccCCc-ccccceEeeeCcCCccCCC
Q 036657 433 SFPRGIHFVSPITIDFSFCVNLTEFPQI-SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 433 ~lp~~~~l~~L~~L~l~~c~~L~~lp~~-~~~L~~L~L~~~~l~~lP~ 479 (481)
.+|..+ .++|+.|++++|. +..+|.. ...|+.|++++|+|..+|.
T Consensus 360 ~LP~~l-p~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 360 VLPETL-PPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVRLPE 405 (754)
T ss_pred cCChhh-cCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCcccCch
Confidence 444322 2455555555542 4455542 2244555555555555554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.8e-14 Score=139.01 Aligned_cols=199 Identities=15% Similarity=0.218 Sum_probs=148.8
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
.+++.+.+.-+. ...+..+.++-+..||+|+++.|. ...+|..-..-..++++|++.+|.++.+-.. |
T Consensus 125 ghl~~L~L~~N~--I~sv~se~L~~l~alrslDLSrN~---------is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 125 GHLEKLDLRHNL--ISSVTSEELSALPALRSLDLSRNL---------ISEIPKPSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred cceeEEeeeccc--cccccHHHHHhHhhhhhhhhhhch---------hhcccCCCCCCCCCceEEeeccccccccccccc
Confidence 345555554333 345678888889999999999887 3444442222223899999999999988765 5
Q ss_pred C-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L 420 (481)
. +.+|.+|.|+.|+++.+|.. +++|++|+.|+|..|+ ++.... |.++++|+.|.+.. +.+..+..+ |..+.++
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKM 271 (873)
T ss_pred cccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeeccc
Confidence 5 88999999999999999876 6669999999999885 666544 88999999999887 456666544 6678888
Q ss_pred CEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccCCCC
Q 036657 421 SMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~s 480 (481)
++|+|.. +++..+..+. ++++|+.|++|.+. +..+.. +..+|+.|+|+.|+|+++|++
T Consensus 272 e~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 272 EHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ceeeccc-chhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChh
Confidence 8999884 7788777654 68888999888843 666543 356788888888888888763
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-15 Score=142.18 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=83.7
Q ss_pred eecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCC
Q 036657 315 LHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSE 392 (481)
Q Consensus 315 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~ 392 (481)
..+|++++.+. .+..|+..+|.+.++|..+. +..|..|++.+|+++.+|+..-.++.|++||...| .+..+|. ++.
T Consensus 127 ~el~~~i~~~~-~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~ 204 (565)
T KOG0472|consen 127 KELPDSIGRLL-DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGG 204 (565)
T ss_pred eecCchHHHHh-hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcc
Confidence 44444444444 44444444555555555433 44555555555555555544444555555555555 3555554 566
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCCc---ccccceE
Q 036657 393 TPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQI---SGNIIEL 467 (481)
Q Consensus 393 l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L 467 (481)
+.+|+.|++.. +.+..+| +|+.+..|..|++.. +.++.+|... ++++|..|++++ ++++++|+. +.+|++|
T Consensus 205 l~~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 205 LESLELLYLRR-NKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERL 280 (565)
T ss_pred hhhhHHHHhhh-cccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhh
Confidence 66666555554 3344444 333333333333331 3333333333 266677777766 457777763 3445677
Q ss_pred eeeCcCCccCCCC
Q 036657 468 KLWYTAIEEVPSS 480 (481)
Q Consensus 468 ~L~~~~l~~lP~s 480 (481)
|+++|.|+.+|.+
T Consensus 281 DlSNN~is~Lp~s 293 (565)
T KOG0472|consen 281 DLSNNDISSLPYS 293 (565)
T ss_pred cccCCccccCCcc
Confidence 7777777777765
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-12 Score=140.31 Aligned_cols=166 Identities=16% Similarity=0.254 Sum_probs=125.2
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
++|+.|++.+|. ...+|..+. .+|++|++++|.++.+|..+ +.+|+.|+|++|++..+|..+. .+
T Consensus 199 ~~L~~L~Ls~N~---------LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~ 263 (754)
T PRK15370 199 EQITTLILDNNE---------LKSLPENLQ---GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SA 263 (754)
T ss_pred cCCcEEEecCCC---------CCcCChhhc---cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CC
Confidence 579999999988 446776543 38999999999999999765 4689999999999999998764 58
Q ss_pred CcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCcccccccc-------------------CCCCCCEEeeeCCCCCc
Q 036657 373 LKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIE-------------------NFNNLSMLCFKGCESLR 432 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~-------------------~L~~L~~L~l~~c~~l~ 432 (481)
|+.|++++| .+..+|+ +. ++|+.|++++| .+..+|..+. -.++|+.|++++| .++
T Consensus 264 L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt 338 (754)
T PRK15370 264 LQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALT 338 (754)
T ss_pred CCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccc
Confidence 999999988 5888887 53 58999999985 5666664332 1135666666653 455
Q ss_pred cCCCCCCCCCCcEEEeecCCCCCccCC-cccccceEeeeCcCCccCCCC
Q 036657 433 SFPRGIHFVSPITIDFSFCVNLTEFPQ-ISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 433 ~lp~~~~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~~~~l~~lP~s 480 (481)
.+|..+ .++|+.|++++|. +..+|. .+.+|+.|+|++|.|+.+|+.
T Consensus 339 ~LP~~l-~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 339 SLPASL-PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNALTNLPEN 385 (754)
T ss_pred cCChhh-cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcCCCCCHh
Confidence 666533 3678888888864 777776 456788888888888888864
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-12 Score=137.29 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCCC
Q 036657 419 NLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 419 ~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~s 480 (481)
+|+.|++++ +.+..+|.. .++|+.|+++++. +..+|..+.+|+.|++++|+|+.+|.+
T Consensus 383 ~L~~LdLs~-N~Lt~LP~l--~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~NqLt~LP~s 440 (788)
T PRK15387 383 GLKELIVSG-NRLTSLPVL--PSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPES 440 (788)
T ss_pred ccceEEecC-CcccCCCCc--ccCCCEEEccCCc-CCCCCcchhhhhhhhhccCcccccChH
Confidence 455555553 344444432 3455666666643 555665555566666666666666653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-14 Score=139.20 Aligned_cols=189 Identities=18% Similarity=0.207 Sum_probs=163.5
Q ss_pred ecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CCCCCceE
Q 036657 274 LDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FEPENLIE 352 (481)
Q Consensus 274 l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~l~~L~~ 352 (481)
++.+..+...+ ++.+..+..|..|+-.+|. ...+|++++.+. .+..|++.++.++.+|+. +.++.|+.
T Consensus 119 l~~s~n~~~el-~~~i~~~~~l~dl~~~~N~---------i~slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 119 LDCSSNELKEL-PDSIGRLLDLEDLDATNNQ---------ISSLPEDMVNLS-KLSKLDLEGNKLKALPENHIAMKRLKH 187 (565)
T ss_pred hhccccceeec-CchHHHHhhhhhhhccccc---------cccCchHHHHHH-HHHHhhccccchhhCCHHHHHHHHHHh
Confidence 44444433333 4556677888888888887 678999999999 999999999999999987 45999999
Q ss_pred EEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCcccccccc-CCCCCCEEeeeCCCCC
Q 036657 353 LNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIE-NFNNLSMLCFKGCESL 431 (481)
Q Consensus 353 L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L~l~~c~~l 431 (481)
||...|-++.+|+.++.+.+|..|++..|+ +..+|.|+++..|.+|.+.. +.++.+|...+ ++++|..|++++ +++
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nkl 264 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKL 264 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-ccc
Confidence 999999999999999999999999999995 99999999999999999987 67888998876 899999999997 799
Q ss_pred ccCCCCCC-CCCCcEEEeecCCCCCccCCccccc--ceEeeeCcCCccC
Q 036657 432 RSFPRGIH-FVSPITIDFSFCVNLTEFPQISGNI--IELKLWYTAIEEV 477 (481)
Q Consensus 432 ~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~~~~L--~~L~L~~~~l~~l 477 (481)
+++|..+- +.+|++|++|++ .+..+|-.+++| +.|-+.||.++++
T Consensus 265 ke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLALEGNPLRTI 312 (565)
T ss_pred ccCchHHHHhhhhhhhcccCC-ccccCCcccccceeeehhhcCCchHHH
Confidence 99999885 999999999995 599999988877 6788889988654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.8e-13 Score=132.29 Aligned_cols=188 Identities=19% Similarity=0.235 Sum_probs=118.3
Q ss_pred CcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C-CCCCceEEE
Q 036657 277 SKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F-EPENLIELN 354 (481)
Q Consensus 277 ~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~-~l~~L~~L~ 354 (481)
+++....+....|+++++|+.|++..|.+ ...---.|..|+ +|+.|.+..|.+..|.+. | .+.++++|+
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~i--------rive~ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRI--------RIVEGLTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccce--------eeehhhhhcCch-hhhhhhhhhcCcccccCcceeeecccceee
Confidence 33333445556666666666666666652 111122455566 777777777777777665 2 388888888
Q ss_pred cCCCCccccccc-ccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCC
Q 036657 355 LPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCES 430 (481)
Q Consensus 355 L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~ 430 (481)
|..|++..+-++ +.+|+.|+.|++|+|. +..+. + .+..+.|+.|+|+. +.+.+++++ +..|..|+.|+|+. +.
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Ns 352 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NS 352 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cc
Confidence 888888877554 6778888888888885 66654 3 77788899999987 556666532 44444444444443 22
Q ss_pred CccCCC----------------------------CC-CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccC
Q 036657 431 LRSFPR----------------------------GI-HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 431 l~~lp~----------------------------~~-~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~l 477 (481)
+..+.+ .+ +|++|+.|.+.| ++++.+|. .+.+|+.|+|.+|.|..+
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCcceee
Confidence 222221 11 267777777777 45777775 355777888887777554
|
|
| >smart00255 TIR Toll - interleukin 1 - resistance | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=107.14 Aligned_cols=90 Identities=42% Similarity=0.761 Sum_probs=78.4
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhh-CCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCchhh-
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKM-NGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFPDKV- 79 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~-~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~~~v- 79 (481)
++.+||++|++.|+|+|++|..|.||..|+....++... .++.|+||+|+..|+++..+.+.++.++..+...+.+..
T Consensus 47 ~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~ 126 (140)
T smart00255 47 EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEK 126 (140)
T ss_pred HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchh
Confidence 478999999999999999999999999999999998654 678999999999999999999999999988755555333
Q ss_pred -hhHHHHHHHhhc
Q 036657 80 -QKWRDVLTEASN 91 (481)
Q Consensus 80 -~~w~~al~~~~~ 91 (481)
..|+.++..+++
T Consensus 127 ~~fW~~~~~~l~~ 139 (140)
T smart00255 127 ERFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHHHHhcc
Confidence 689999888764
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=131.76 Aligned_cols=162 Identities=22% Similarity=0.208 Sum_probs=88.3
Q ss_pred CCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc-----
Q 036657 294 NLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK----- 368 (481)
Q Consensus 294 ~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~----- 368 (481)
+|+.|.+.+|. ...+|. ++.+|++|++++|.++.+|.. +.+|+.|++.+|.+..+|....
T Consensus 223 ~L~~L~L~~N~---------Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L 287 (788)
T PRK15387 223 HITTLVIPDNN---------LTSLPA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKL 287 (788)
T ss_pred CCCEEEccCCc---------CCCCCC----CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEE
Confidence 56666666665 233443 223666666666666666542 3455555555555444443110
Q ss_pred ------------CCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCC
Q 036657 369 ------------KAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPR 436 (481)
Q Consensus 369 ------------~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~ 436 (481)
.+++|+.|++++| .+..+|.+ ..+|+.|++++| .+..+|.. ..+|+.|++++ +.++.+|.
T Consensus 288 ~Ls~N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~ 359 (788)
T PRK15387 288 WIFGNQLTSLPVLPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSD-NQLASLPT 359 (788)
T ss_pred ECcCCccccccccccccceeECCCC-ccccCCCC--cccccccccccC-cccccccc---ccccceEecCC-CccCCCCC
Confidence 1245666666665 35555542 124555555553 34445421 24788888886 67777775
Q ss_pred CCC------------------CCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCC
Q 036657 437 GIH------------------FVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 437 ~~~------------------l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~ 479 (481)
... +.+|+.|+++++ .+..+|..+++|+.|++++|.|+.+|.
T Consensus 360 lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 360 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM 419 (788)
T ss_pred CCcccceehhhccccccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCCCCCc
Confidence 211 124556666653 366666666666666666666666664
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-13 Score=140.41 Aligned_cols=103 Identities=25% Similarity=0.309 Sum_probs=88.5
Q ss_pred ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCc
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPI 444 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~ 444 (481)
+.++++||.|+|++|+ +..+|+ +.++..|+.|+|+| +.+..+|..+.++..|++|...+ +.+..+|....++.|+
T Consensus 379 l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecccc-cccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcce
Confidence 4578999999999995 999998 89999999999999 78999999999999999999885 7899999766799999
Q ss_pred EEEeecCCCCCc--cCC-cc-cccceEeeeCcC
Q 036657 445 TIDFSFCVNLTE--FPQ-IS-GNIIELKLWYTA 473 (481)
Q Consensus 445 ~L~l~~c~~L~~--lp~-~~-~~L~~L~L~~~~ 473 (481)
.+|++. +.|.. +|. .. ++|++|||+||.
T Consensus 456 ~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred EEeccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence 999976 44654 444 23 799999999886
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-12 Score=127.43 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=138.9
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~ 365 (481)
+..+..+..|..|.++.|. .-.+|..+..+. .|.||+++.|.+..+|..++.--|+.|-+++|+++.+|.
T Consensus 91 p~~~~~f~~Le~liLy~n~---------~r~ip~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNC---------IRTIPEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPE 160 (722)
T ss_pred chHHHHHHHHHHHHHHhcc---------ceecchhhhhhh-HHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCc
Confidence 4555566667778888776 577899999998 999999999999999999887789999999999999999
Q ss_pred cccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC-CCCCC
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI-HFVSP 443 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L 443 (481)
+++.+++|..||.+.| .+..+|. ++++.+|+.|.+.. +.+..+|+.+..|+ |..||++ |+++..+|-.+ +|+.|
T Consensus 161 ~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfS-cNkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFS-CNKISYLPVDFRKMRHL 236 (722)
T ss_pred ccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecc-cCceeecchhhhhhhhh
Confidence 9999999999999999 5888887 99999999999998 67889999998765 9999999 89999999888 49999
Q ss_pred cEEEeecCCCCCccCC
Q 036657 444 ITIDFSFCVNLTEFPQ 459 (481)
Q Consensus 444 ~~L~l~~c~~L~~lp~ 459 (481)
++|-|.+++ |++=|.
T Consensus 237 q~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 237 QVLQLENNP-LQSPPA 251 (722)
T ss_pred eeeeeccCC-CCCChH
Confidence 999998865 777665
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-11 Score=127.38 Aligned_cols=154 Identities=20% Similarity=0.266 Sum_probs=108.4
Q ss_pred cccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEe
Q 036657 323 YLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTN 400 (481)
Q Consensus 323 ~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~ 400 (481)
..|.+|.|++++.+.+..+|++++ +.+|..|+..+|++..+|..+....+|+.|.+.+| .+..+|+ ..++.+|++|+
T Consensus 238 p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeee
Confidence 345688889999888888997776 88899999999988888888888889999988888 4888888 56689999999
Q ss_pred ccCCCCCccccccccC-CC-CCCEEeeeCCCCCccCCC--------------------------CCCCCCCcEEEeecCC
Q 036657 401 LLNCRDLACVRSSIEN-FN-NLSMLCFKGCESLRSFPR--------------------------GIHFVSPITIDFSFCV 452 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~-L~-~L~~L~l~~c~~l~~lp~--------------------------~~~l~~L~~L~l~~c~ 452 (481)
|.. +++..+|..+-. +. .|+.|+.+ |+.+..+|. ..++++|+.|+|++ +
T Consensus 317 L~~-N~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-N 393 (1081)
T KOG0618|consen 317 LQS-NNLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-N 393 (1081)
T ss_pred ehh-ccccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-c
Confidence 987 567777653221 11 13333333 233333332 22466777777777 3
Q ss_pred CCCccCCc----ccccceEeeeCcCCccCCCC
Q 036657 453 NLTEFPQI----SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 453 ~L~~lp~~----~~~L~~L~L~~~~l~~lP~s 480 (481)
.|..||.. +..|++|+|+||.++.+|.+
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t 425 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLTTLPDT 425 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhhhhhHH
Confidence 47777762 34457777777777777754
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-10 Score=125.52 Aligned_cols=151 Identities=23% Similarity=0.222 Sum_probs=108.7
Q ss_pred CCcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCc-cccccccccceeeccc-cCCCCC
Q 036657 265 GTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQG-LEYLPEELRYLHWHEY-SLKMLP 342 (481)
Q Consensus 265 ~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~-~l~~lP 342 (481)
.+..+|++++.......+.-. ...++|++|-+.+|.. ....++.. |..+| .||+|++++| .+..||
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~-------~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSD-------WLLEISGEFFRSLP-LLRVLDLSGNSSLSKLP 588 (889)
T ss_pred chhheeEEEEeccchhhccCC----CCCCccceEEEeecch-------hhhhcCHHHHhhCc-ceEEEECCCCCccCcCC
Confidence 345667776665443222111 2344799999998751 02444544 66688 9999999976 678999
Q ss_pred CCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCC--CCccccccccCCC
Q 036657 343 FDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCR--DLACVRSSIENFN 418 (481)
Q Consensus 343 ~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~--~l~~lp~~i~~L~ 418 (481)
.+++ +-+|++|+++++.+.++|.++++|++|.+|++..+..+..+|. ...+++|++|.+..-. .-...-..+.+|.
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 9998 9999999999999999999999999999999999988888888 5569999999987522 1111122345566
Q ss_pred CCCEEeeeC
Q 036657 419 NLSMLCFKG 427 (481)
Q Consensus 419 ~L~~L~l~~ 427 (481)
+|+.+.+..
T Consensus 669 ~L~~ls~~~ 677 (889)
T KOG4658|consen 669 HLENLSITI 677 (889)
T ss_pred chhhheeec
Confidence 666665543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6e-11 Score=114.35 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=124.6
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~ 346 (481)
.+..|.++.+. ...+.+.+|+.+++||.|++++|.+ ...-|+.|..++.-++.+..++|.++++|.. |.
T Consensus 68 ~tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~I--------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNI--------SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cceEEEeccCC--cccCChhhccchhhhceecccccch--------hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 34445555444 4567899999999999999999985 4445677888883333344444788888876 43
Q ss_pred -CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC-------------------
Q 036657 347 -PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN------------------- 403 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~------------------- 403 (481)
+..|+-|.+.-|++.-++. .+..|++|..|.+..|. +..++. +..+.+++++.+..
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 5555555555555554332 24455555555555442 444433 33333333332211
Q ss_pred ------------------------------------------CCCCcccc-ccccCCCCCCEEeeeCCCCCccCCCCC--
Q 036657 404 ------------------------------------------CRDLACVR-SSIENFNNLSMLCFKGCESLRSFPRGI-- 438 (481)
Q Consensus 404 ------------------------------------------c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~-- 438 (481)
|......| ..|+.|++|++|++++ +.++.+-...
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe 295 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFE 295 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhhhc
Confidence 11111112 1377899999999996 7888876543
Q ss_pred CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccCCC
Q 036657 439 HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 439 ~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~ 479 (481)
++.+++.|.|.+ ++++.+.. ....|+.|+|.+|+|+.+-+
T Consensus 296 ~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 296 GAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred chhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 488899999988 45777665 35677899999999977543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-10 Score=109.92 Aligned_cols=180 Identities=19% Similarity=0.196 Sum_probs=112.2
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcccccc--ccccceeeccccCCC-----CCCCCC-C-CCceEEEcC
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLP--EELRYLHWHEYSLKM-----LPFDFE-P-ENLIELNLP 356 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~--~~Lr~L~l~~~~l~~-----lP~~~~-l-~~L~~L~L~ 356 (481)
...|..+++|+.|++++|.+ ....+..+..+. .+|++|++++|.+.. +...+. + .+|++|+++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~--------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNAL--------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred HHHHHhcCceeEEEccCCCC--------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence 45667788888888887774 222333333333 148888888877652 222222 3 788888888
Q ss_pred CCCcc-----cccccccCCCCCcEEeccCCCCCc-----ccCC-CCCCCCCCEEeccCCCCC----ccccccccCCCCCC
Q 036657 357 YSKVE-----QIWKGEKKAFKLKYIDISHSQQLV-----RMLD-LSETPNLERTNLLNCRDL----ACVRSSIENFNNLS 421 (481)
Q Consensus 357 ~~~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~-----~lp~-~~~l~~L~~L~L~~c~~l----~~lp~~i~~L~~L~ 421 (481)
+|.++ .++..+..+++|++|++++|. +. .++. +..+++|++|++++|..- ..++..+..+++|+
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 88776 344456677788888888874 44 2222 455678888888886421 23445566778888
Q ss_pred EEeeeCCCCCcc-----CCCCC--CCCCCcEEEeecCCCCC-----ccCC---cccccceEeeeCcCCcc
Q 036657 422 MLCFKGCESLRS-----FPRGI--HFVSPITIDFSFCVNLT-----EFPQ---ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 422 ~L~l~~c~~l~~-----lp~~~--~l~~L~~L~l~~c~~L~-----~lp~---~~~~L~~L~L~~~~l~~ 476 (481)
+|++++| .+.. +...+ ..+.|++|++++|. +. .++. ...+|+++++++|.++.
T Consensus 225 ~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 225 VLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred EEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 8888875 3432 11111 24788888888875 42 1211 23577888888888764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.6e-11 Score=119.33 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=138.0
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAF 371 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~ 371 (481)
..-.+.+++.|. ...+|..+..+. .|..|.+..|.+..+|..+. +..|.+|+|+.|++..+|.++..|+
T Consensus 75 tdt~~aDlsrNR---------~~elp~~~~~f~-~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp 144 (722)
T KOG0532|consen 75 TDTVFADLSRNR---------FSELPEEACAFV-SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP 144 (722)
T ss_pred cchhhhhccccc---------cccCchHHHHHH-HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc
Confidence 333456667666 466777777777 88888888888899998877 8889999999999999998888775
Q ss_pred CCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeec
Q 036657 372 KLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSF 450 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~ 450 (481)
|+.|-+++| +++.+|+ ++.++.|..|+.+. +.+..+|+.++.+.+|+.|++.. +.+..+|....--.|.+|+++.
T Consensus 145 -Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfSc 220 (722)
T KOG0532|consen 145 -LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSC 220 (722)
T ss_pred -ceeEEEecC-ccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeeccc
Confidence 888888888 4888887 88888888999887 56788888899999999999885 6888888866544578888865
Q ss_pred CCCCCccCCcccc---cceEeeeCcCCccCCCC
Q 036657 451 CVNLTEFPQISGN---IIELKLWYTAIEEVPSS 480 (481)
Q Consensus 451 c~~L~~lp~~~~~---L~~L~L~~~~l~~lP~s 480 (481)
+++..+|-.+.+ |++|.|.+|.++.-|..
T Consensus 221 -Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 221 -NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred -CceeecchhhhhhhhheeeeeccCCCCCChHH
Confidence 679999986554 47888999988876653
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-09 Score=96.73 Aligned_cols=98 Identities=20% Similarity=0.325 Sum_probs=22.5
Q ss_pred cccceeeccccCCCCCCCC-CCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-C-CCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDF-EPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-L-SETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~-~~l~~L~~L~L~~ 403 (481)
++|.|+++++.++.+..-- .+.+|+.|+|++|.|+.+. ++..+++|+.|++++|. ++.++. + ..+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcC
Confidence 4555555555555543221 2455555555555555553 34455555555555552 444432 2 2355555555554
Q ss_pred CCCCcccc--ccccCCCCCCEEeeeC
Q 036657 404 CRDLACVR--SSIENFNNLSMLCFKG 427 (481)
Q Consensus 404 c~~l~~lp--~~i~~L~~L~~L~l~~ 427 (481)
+ .+..+. ..+..+++|+.|++.+
T Consensus 98 N-~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 98 N-KISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp S----SCCCCGGGGG-TT--EEE-TT
T ss_pred C-cCCChHHhHHHHcCCCcceeeccC
Confidence 2 222221 1244455555555554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-09 Score=110.46 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=133.3
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~ 365 (481)
......+.+..|.+.++. ...++.....+..+|+.|+++++.+..+|..+. +++|+.|++.+|++..+|.
T Consensus 110 ~~~~~~~~l~~L~l~~n~---------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~ 180 (394)
T COG4886 110 SELLELTNLTSLDLDNNN---------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK 180 (394)
T ss_pred hhhhcccceeEEecCCcc---------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhh
Confidence 334455778888888877 566676666551288888888888888875555 8888888888888888888
Q ss_pred cccCCCCCcEEeccCCCCCcccCCC-CCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCC
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLDL-SETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSP 443 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~~-~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L 443 (481)
....+++|+.|++++|. +..+|.. +.+.+|++|.+++. .....+..+.++.++..|.+. .+.+..++..+. +++|
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~-~n~~~~~~~~~~~l~~l 257 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNL 257 (394)
T ss_pred hhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCC-cceecchhhhhcccccccccC-Cceeeeccchhcccccc
Confidence 77788888888888884 8888874 56666888888873 356667778888888888866 356666566554 7788
Q ss_pred cEEEeecCCCCCccCC--cccccceEeeeCcCCccCCC
Q 036657 444 ITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 444 ~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP~ 479 (481)
++|+++++ .+..++. ...+++.|+++++.+..+|.
T Consensus 258 ~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 258 ETLDLSNN-QISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ceeccccc-cccccccccccCccCEEeccCccccccch
Confidence 88888884 4777776 24466888888887765543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.5e-10 Score=103.71 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
.+.|.+|||++|.|+.+-++++-+++++.|++|+|. +..+..+..+++|+.|+|++ +.+.++...-..|-+.++|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehh
Confidence 345777777777777777777777777777777773 66666677777777777777 3344433222334455566666
Q ss_pred CCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--ccc---ccceEeeeCcCCccCC
Q 036657 427 GCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISG---NIIELKLWYTAIEEVP 478 (481)
Q Consensus 427 ~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~---~L~~L~L~~~~l~~lP 478 (481)
+ +.+..+...-++-+|..|+++++ +++++.+ .+| .|+.|.|.+|.+..+|
T Consensus 361 ~-N~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 361 Q-NKIETLSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred h-hhHhhhhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 4 44555443223566666666663 3544443 223 3355666666665554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-09 Score=106.54 Aligned_cols=184 Identities=20% Similarity=0.157 Sum_probs=126.8
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCC-CCCCCC-CC---CceEEEcCCCCc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKM-LPFDFE-PE---NLIELNLPYSKV 360 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-lP~~~~-l~---~L~~L~L~~~~i 360 (481)
...+...++|+.|.+.++.... .......++..+..++ +|++|+++++++.. .+..+. +. +|++|++++|++
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKGC-GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhcC-ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence 4456677889999998876310 0000122344566677 99999999998863 333332 33 499999999988
Q ss_pred c-----cccccccCC-CCCcEEeccCCCCCc-----ccCC-CCCCCCCCEEeccCCCCC----ccccccccCCCCCCEEe
Q 036657 361 E-----QIWKGEKKA-FKLKYIDISHSQQLV-----RMLD-LSETPNLERTNLLNCRDL----ACVRSSIENFNNLSMLC 424 (481)
Q Consensus 361 ~-----~lp~~~~~L-~~L~~L~Ls~~~~l~-----~lp~-~~~l~~L~~L~L~~c~~l----~~lp~~i~~L~~L~~L~ 424 (481)
. .+...+..+ ++|+.|++++|. +. .++. +..+++|++|++++|.-. ..++..+..+++|++|+
T Consensus 121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 121 GDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred chHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence 6 234456677 999999999995 54 2333 667789999999997532 23455566778999999
Q ss_pred eeCCCCCc-----cCCCCC-CCCCCcEEEeecCCCCCc-----cCCc----ccccceEeeeCcCCc
Q 036657 425 FKGCESLR-----SFPRGI-HFVSPITIDFSFCVNLTE-----FPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 425 l~~c~~l~-----~lp~~~-~l~~L~~L~l~~c~~L~~-----lp~~----~~~L~~L~L~~~~l~ 475 (481)
+++| .+. .++..+ .+++|++|++++|. +.. +... ..+|++|++++|.++
T Consensus 200 L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 200 LNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred ccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 9986 343 223333 38899999999976 542 1122 368999999999885
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-09 Score=93.82 Aligned_cols=126 Identities=20% Similarity=0.177 Sum_probs=53.6
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccc-cccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccc-
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLE-YLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGE- 367 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~- 367 (481)
.+..++|.|++.+|.+ ..+ +.++ .+. +|+.|++++|.++.++.--.+.+|++|++++|+|+.+..++
T Consensus 16 ~n~~~~~~L~L~~n~I---------~~I-e~L~~~l~-~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI---------STI-ENLGATLD-KLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-T-T--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHH
T ss_pred cccccccccccccccc---------ccc-cchhhhhc-CCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchH
Confidence 4455789999998873 333 3455 355 89999999999999886555999999999999999997665
Q ss_pred cCCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccCCCCCccccc----cccCCCCCCEEeeeCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLNCRDLACVRS----SIENFNNLSMLCFKGC 428 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~c 428 (481)
..+++|+.|++++|+ +..+.+ ++.+++|+.|++.+++- ...+. -+..+|+|+.||-...
T Consensus 85 ~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 85 KNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 469999999999994 777665 67899999999998653 33232 2677889999887653
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-09 Score=105.14 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=138.5
Q ss_pred hhcCCCCcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC
Q 036657 260 LKKNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK 339 (481)
Q Consensus 260 l~~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~ 339 (481)
...+...++++.|+++.......... .....++++|.|+++.|-+. .-..+-.-...|| +|+.|+++.|.+.
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~------nw~~v~~i~eqLp-~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFH------NWFPVLKIAEQLP-SLENLNLSSNRLS 185 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHH------hHHHHHHHHHhcc-cchhccccccccc
Confidence 33445567788888886655333222 56778999999999988741 0112223456778 9999999999887
Q ss_pred CCCCCCC---CCCceEEEcCCCCccccccc----ccCCCCCcEEeccCCCCCc-ccCCCCCCCCCCEEeccCCCCCcccc
Q 036657 340 MLPFDFE---PENLIELNLPYSKVEQIWKG----EKKAFKLKYIDISHSQQLV-RMLDLSETPNLERTNLLNCRDLACVR 411 (481)
Q Consensus 340 ~lP~~~~---l~~L~~L~L~~~~i~~lp~~----~~~L~~L~~L~Ls~~~~l~-~lp~~~~l~~L~~L~L~~c~~l~~lp 411 (481)
..-++.. +.+|..|.|+.|+++ |+. ...+|+|..|+|.+|..+. .--...-+..|++|+|++ +++...+
T Consensus 186 ~~~~s~~~~~l~~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~ 262 (505)
T KOG3207|consen 186 NFISSNTTLLLSHLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFD 262 (505)
T ss_pred CCccccchhhhhhhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccc
Confidence 6555432 889999999999887 443 4568999999999884221 111144567789999998 5566666
Q ss_pred --ccccCCCCCCEEeeeCCCCCccC--CCC------CCCCCCcEEEeecCCCCCccCC-----cccccceEeeeCcCCc
Q 036657 412 --SSIENFNNLSMLCFKGCESLRSF--PRG------IHFVSPITIDFSFCVNLTEFPQ-----ISGNIIELKLWYTAIE 475 (481)
Q Consensus 412 --~~i~~L~~L~~L~l~~c~~l~~l--p~~------~~l~~L~~L~l~~c~~L~~lp~-----~~~~L~~L~L~~~~l~ 475 (481)
..++.|+.|..|+++.| .+.++ |+. ..+++|+.|+++.++ +.+++. ..++|+.|.+.+|.+.
T Consensus 263 ~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 263 QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccccccc
Confidence 45888999999999864 45443 332 238899999998844 666664 3566777776666653
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-08 Score=97.80 Aligned_cols=133 Identities=14% Similarity=0.231 Sum_probs=88.0
Q ss_pred ccccccccceeeccccCCCCCCCCCCCCceEEEcCCC-CcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEe
Q 036657 322 EYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYS-KVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTN 400 (481)
Q Consensus 322 ~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~-~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~ 400 (481)
..+. +++.|++++|.++++|. -+.+|++|.++++ .++.+|..+ ..+|++|++++|..+..+|. +|+.|.
T Consensus 49 ~~~~-~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----sLe~L~ 118 (426)
T PRK15386 49 EEAR-ASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----SVRSLE 118 (426)
T ss_pred HHhc-CCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----ccceEE
Confidence 3444 89999999999999992 3678999999874 677788655 36899999999977877774 466677
Q ss_pred ccC--CCCCccccccccCCCCCCEEeeeCCCCC--ccCCCCCCCCCCcEEEeecCCCCCccCC-cccccceEeeeCc
Q 036657 401 LLN--CRDLACVRSSIENFNNLSMLCFKGCESL--RSFPRGIHFVSPITIDFSFCVNLTEFPQ-ISGNIIELKLWYT 472 (481)
Q Consensus 401 L~~--c~~l~~lp~~i~~L~~L~~L~l~~c~~l--~~lp~~~~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~~~ 472 (481)
+.+ |..+..+|++ |+.|.+.+++.. ..+|. .-.++|++|.+++|..+ .+|. .+.+|+.|+++.+
T Consensus 119 L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNG------LTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNI-ILPEKLPESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcch------Hhheecccccccccccccc-ccCCcccEEEecCCCcc-cCcccccccCcEEEeccc
Confidence 654 3345666654 445555432211 11111 11357888888887744 3443 4567777777654
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-09 Score=99.40 Aligned_cols=128 Identities=14% Similarity=0.166 Sum_probs=93.6
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNC 404 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c 404 (481)
.|..|++++|.++.+..+.. .+.++.|++++|++..+-. +..|++|..||||+|. +.++.. -.++-|.++|.|.+
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh-
Confidence 67788888888888877776 7788888888888877644 7778888888888884 666655 34667778888887
Q ss_pred CCCccccccccCCCCCCEEeeeCCCCCccCCC--CC-CCCCCcEEEeecCCCCCccCCc
Q 036657 405 RDLACVRSSIENFNNLSMLCFKGCESLRSFPR--GI-HFVSPITIDFSFCVNLTEFPQI 460 (481)
Q Consensus 405 ~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~--~~-~l~~L~~L~l~~c~~L~~lp~~ 460 (481)
+.++.+ +.++.|-+|..|++++ +++..+.. .+ ++|.|++|.+.+++ +..+|+.
T Consensus 362 N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vdY 417 (490)
T KOG1259|consen 362 NKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVDY 417 (490)
T ss_pred hhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccchH
Confidence 444444 3677788888888886 56665543 33 38888888888865 7777763
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-08 Score=101.50 Aligned_cols=151 Identities=26% Similarity=0.259 Sum_probs=128.8
Q ss_pred ccC-CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCC-CCCCceEEEcCCCCcccccccc
Q 036657 290 ANM-SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDF-EPENLIELNLPYSKVEQIWKGE 367 (481)
Q Consensus 290 ~~l-~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~l~~L~~L~L~~~~i~~lp~~~ 367 (481)
..+ .+|+.|++++|. ...+|..+..++ +|+.|+++.|++..+|... .+.+|..|++++|++..+|..+
T Consensus 136 ~~~~~nL~~L~l~~N~---------i~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~ 205 (394)
T COG4886 136 GLLKSNLKELDLSDNK---------IESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI 205 (394)
T ss_pred ccchhhcccccccccc---------hhhhhhhhhccc-cccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh
Confidence 344 389999999998 567777889999 9999999999999999988 6999999999999999999988
Q ss_pred cCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEE
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITI 446 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L 446 (481)
..+.+|..|.+++|. ....+. +..+.++..|.+.+ ..+..++..++.+++|+.|++++ +.+..++....+.+|+.|
T Consensus 206 ~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L 282 (394)
T COG4886 206 ELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLREL 282 (394)
T ss_pred hhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEE
Confidence 888889999999985 444444 88999999998766 55666688899999999999995 788888884469999999
Q ss_pred EeecCCC
Q 036657 447 DFSFCVN 453 (481)
Q Consensus 447 ~l~~c~~ 453 (481)
++++...
T Consensus 283 ~~s~n~~ 289 (394)
T COG4886 283 DLSGNSL 289 (394)
T ss_pred eccCccc
Confidence 9998543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7e-09 Score=100.31 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=56.1
Q ss_pred ccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCC
Q 036657 322 EYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNL 396 (481)
Q Consensus 322 ~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L 396 (481)
..+|.....++++.|.++++|+. |. +++|+.|||++|.|+.+ |..++.|..|-.|-+.++..++.+|. |+++..|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 34555667777777777777776 44 77777777777777766 55677777777776666445777775 6666666
Q ss_pred CEEeccC
Q 036657 397 ERTNLLN 403 (481)
Q Consensus 397 ~~L~L~~ 403 (481)
+.|.+.-
T Consensus 143 qrLllNa 149 (498)
T KOG4237|consen 143 QRLLLNA 149 (498)
T ss_pred HHHhcCh
Confidence 6665543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.9e-09 Score=100.52 Aligned_cols=177 Identities=18% Similarity=0.132 Sum_probs=128.7
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecC--CccccccccccceeeccccCCCCCCC---CC-CCCceEEEcCCCCcccc
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLD--QGLEYLPEELRYLHWHEYSLKMLPFD---FE-PENLIELNLPYSKVEQI 363 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~--~~l~~l~~~Lr~L~l~~~~l~~lP~~---~~-l~~L~~L~L~~~~i~~l 363 (481)
+++++||...+.++.. ...+ +....+| ++|.|++++|-+...-+. .. +++|+.|+|+.|++...
T Consensus 118 sn~kkL~~IsLdn~~V---------~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV---------EDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred hhHHhhhheeecCccc---------cccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 5678899999987762 2222 3566778 999999999866543322 12 88999999999998876
Q ss_pred ccc--ccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC
Q 036657 364 WKG--EKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI 438 (481)
Q Consensus 364 p~~--~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~ 438 (481)
+.+ ...+.+|+.|.++.|. +.. +.. +-.+|+|+.|+|.++.....-..+...+..|+.|+|++ +++..++..-
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~ 265 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGY 265 (505)
T ss_pred ccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Cccccccccc
Confidence 665 3468999999999995 542 222 56789999999999754433333455678899999997 5676776432
Q ss_pred ---CCCCCcEEEeecCCCCCcc--CC--------cccccceEeeeCcCCccCCC
Q 036657 439 ---HFVSPITIDFSFCVNLTEF--PQ--------ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 439 ---~l~~L~~L~l~~c~~L~~l--p~--------~~~~L~~L~L~~~~l~~lP~ 479 (481)
.++.|..|+++.|. +.++ |+ .+.+|++|+++.|+|.+.|+
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 49999999998765 4432 32 35688999999999977654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-07 Score=96.48 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=85.3
Q ss_pred CceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 349 NLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 349 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
.++.|+|+++.+. .+|..+..|++|+.|+|++|.....+|. ++.+++|+.|+|++|.....+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778888888887 6788888899999999998864457776 8888999999999876666788888999999999998
Q ss_pred CCCCCccCCCCCC--CCCCcEEEeecCCCCCccC
Q 036657 427 GCESLRSFPRGIH--FVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 427 ~c~~l~~lp~~~~--l~~L~~L~l~~c~~L~~lp 458 (481)
++.-...+|..+. +.++..+++.+++.+-..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 7654457777653 4567788888766555554
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.1e-07 Score=88.74 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=87.7
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCCCCCCCCCCCceEEEcCCC-Cccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKMLPFDFEPENLIELNLPYS-KVEQIWKG 366 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~lP~~~~l~~L~~L~L~~~-~i~~lp~~ 366 (481)
+..+.+++.|++++|. ...+| .+|.+|+.|.+++| .++.+|..+ +.+|++|++++| .+..+|.+
T Consensus 48 ~~~~~~l~~L~Is~c~---------L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCD---------IESLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHhcCCCEEEeCCCC---------CcccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc
Confidence 4457999999999886 45666 47778999999875 577888655 679999999998 78788764
Q ss_pred ccCCCCCcEEeccCCC--CCcccCCCCCCCCCCEEeccCCCCC--ccccccccCCCCCCEEeeeCCCCCccCCCCCCCCC
Q 036657 367 EKKAFKLKYIDISHSQ--QLVRMLDLSETPNLERTNLLNCRDL--ACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVS 442 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~--~l~~lp~~~~l~~L~~L~L~~c~~l--~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~ 442 (481)
|+.|+++++. .+..+| ++|+.|.+.+++.. ..+|..+ .++|++|++++|..+ .+|..+ ..+
T Consensus 114 ------Le~L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L-P~S 178 (426)
T PRK15386 114 ------VRSLEIKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL-PES 178 (426)
T ss_pred ------cceEEeCCCCCcccccCc-----chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc-ccc
Confidence 5666666542 234444 35667766543211 1112111 157888888887644 344322 357
Q ss_pred CcEEEeecC
Q 036657 443 PITIDFSFC 451 (481)
Q Consensus 443 L~~L~l~~c 451 (481)
|+.|.++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 888887664
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=94.96 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=90.2
Q ss_pred cccceeeccccCC-CCCCCCC-CCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEecc
Q 036657 327 ELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLL 402 (481)
Q Consensus 327 ~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~ 402 (481)
.++.|+++++.+. .+|..+. +.+|+.|+|++|.+. .+|..+..+++|+.|+|++|.....+|+ ++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778889988886 6777776 899999999999997 7888899999999999999965557887 9999999999999
Q ss_pred CCCCCccccccccCC-CCCCEEeeeCCCCCccCC
Q 036657 403 NCRDLACVRSSIENF-NNLSMLCFKGCESLRSFP 435 (481)
Q Consensus 403 ~c~~l~~lp~~i~~L-~~L~~L~l~~c~~l~~lp 435 (481)
+|.....+|..++.+ .++..+++.++..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 987667899888764 567788888766555544
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.2e-07 Score=65.13 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=26.9
Q ss_pred cccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHS 381 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~ 381 (481)
+|++|++++|.++.+|.. |. +++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 455555555555555543 32 4555555555555554433 2444555555555544
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.2e-07 Score=64.84 Aligned_cols=57 Identities=28% Similarity=0.340 Sum_probs=48.9
Q ss_pred CCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 348 ENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
++|++|++++|+++.+|. .+..+++|++|++++|. +..+|. |.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 378899999999999986 47889999999999884 888876 8999999999999863
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.4e-06 Score=55.28 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCC
Q 036657 348 ENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDL 390 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~ 390 (481)
++|++|++++|+|+.+|..+.+|++|++|++++|+ ++.+|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 36778888888888887778888888888888884 6666543
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-07 Score=95.41 Aligned_cols=125 Identities=25% Similarity=0.204 Sum_probs=84.1
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCC--CCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLS--ETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~--~l~~L~~L~L~~ 403 (481)
.|...+.+.|.+..+..+.. ++.|+.|+|++|++...- .+..+++|++|||++| .++.+|.++ ++. |+.|++++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecc
Confidence 34444555556665655555 677888888888887764 6778888888888888 488888743 333 88888887
Q ss_pred CCCCccccccccCCCCCCEEeeeCCCCCccCCCC---CCCCCCcEEEeecCCCCCccC
Q 036657 404 CRDLACVRSSIENFNNLSMLCFKGCESLRSFPRG---IHFVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 404 c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~---~~l~~L~~L~l~~c~~L~~lp 458 (481)
+.+.++. .+.+|++|+.||+++ +-+...... ..+.+|..|+|.|++ +---|
T Consensus 242 -N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 242 -NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred -cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc-cccCH
Confidence 5566664 678888888888885 334333321 136677788888855 44334
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1e-06 Score=90.51 Aligned_cols=172 Identities=21% Similarity=0.204 Sum_probs=92.6
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
+..+++|..|++.+|. ...+...+..++ +|++|++++|.++.+...-.+..|+.|++.+|.|..+. ++.
T Consensus 91 l~~~~~l~~l~l~~n~---------i~~i~~~l~~~~-~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~ 159 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK---------IEKIENLLSSLV-NLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLE 159 (414)
T ss_pred cccccceeeeeccccc---------hhhcccchhhhh-cchheeccccccccccchhhccchhhheeccCcchhcc-CCc
Confidence 4556666666666665 233333355555 66666666666666655544556666666666666553 234
Q ss_pred CCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCC--Cc
Q 036657 369 KAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVS--PI 444 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~--L~ 444 (481)
.++.|+.+++++|. +..++. ...+.+|+.+.+.++ ....+ ..+..+..+..+++.+ +.+..+-....+.. |+
T Consensus 160 ~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n-~i~~i-~~~~~~~~l~~~~l~~-n~i~~~~~l~~~~~~~L~ 235 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGN-SIREI-EGLDLLKKLVLLSLLD-NKISKLEGLNELVMLHLR 235 (414)
T ss_pred cchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCC-chhcc-cchHHHHHHHHhhccc-ccceeccCcccchhHHHH
Confidence 46666666666663 555555 366666666666653 22222 1222333333334432 23333322112333 77
Q ss_pred EEEeecCCCCCccCC---cccccceEeeeCcCCcc
Q 036657 445 TIDFSFCVNLTEFPQ---ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~---~~~~L~~L~L~~~~l~~ 476 (481)
.+.+++.. +...|. ...++..|++..+.+..
T Consensus 236 ~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 236 ELYLSGNR-ISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHhcccCc-cccccccccccccccccchhhccccc
Confidence 78887743 555432 34455677777666643
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=2e-06 Score=88.37 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=26.6
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc-ccCCCCCcEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHS 381 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~ 381 (481)
.|+.|++.+|++..++..-.+..|+.+++.+|.+..+... ...+.+|+.+.+.++
T Consensus 141 ~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 141 LLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred chhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 3555555555555444333345555555555555444332 344455555555544
|
|
| >PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.1e-05 Score=65.46 Aligned_cols=45 Identities=40% Similarity=0.611 Sum_probs=39.3
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEe
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFY 50 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy 50 (481)
++.+||++|+..|+++|++|..|.||..|+... +..|+.|+||..
T Consensus 42 ~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a----~~~~~~iipv~~ 86 (102)
T PF13676_consen 42 EIERAIERSDCVIVLLSPNYLKSPWCRFELGAA----WKRGKPIIPVRL 86 (102)
T ss_dssp CCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHH----HCTSESEEEEEC
T ss_pred HHHHHHHhCCEEEEEECcccccChHHHHHHHHH----HHCCCEEEEEEE
Confidence 467899999999999999999999999998776 346678999994
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.2e-07 Score=94.31 Aligned_cols=175 Identities=18% Similarity=0.165 Sum_probs=113.3
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc----------cCCCCCCCCCCCCceEEEcC
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY----------SLKMLPFDFEPENLIELNLP 356 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~----------~l~~lP~~~~l~~L~~L~L~ 356 (481)
-.+..++.||+|.+.++.+ .. -.++..+-..|..|--++- ....+-.++....|.+.+.+
T Consensus 103 i~ifpF~sLr~LElrg~~L---------~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fs 172 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDL---------ST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFS 172 (1096)
T ss_pred ceeccccceeeEEecCcch---------hh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcc
Confidence 3445678888998888763 11 1222222223333322110 11223333335678888888
Q ss_pred CCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCC
Q 036657 357 YSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPR 436 (481)
Q Consensus 357 ~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~ 436 (481)
+|.+..+-..+.-++.|+.|||++|+ +.+...+..++.|++|+|+. +.+..+|.--..--+|+.|++++ +.++++-.
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g 249 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG 249 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhccccccccccc-chhccccccchhhhhheeeeecc-cHHHhhhh
Confidence 88888887788888899999999985 66666678888889999987 56777764311112488888886 67877766
Q ss_pred CCCCCCCcEEEeecCCCCCccCC-----cccccceEeeeCcCCc
Q 036657 437 GIHFVSPITIDFSFCVNLTEFPQ-----ISGNIIELKLWYTAIE 475 (481)
Q Consensus 437 ~~~l~~L~~L~l~~c~~L~~lp~-----~~~~L~~L~L~~~~l~ 475 (481)
..++++|+.|+++++ -|..+.+ .+..|+.|+|.||.+-
T Consensus 250 ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 557889999999873 3555444 2445678888888663
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.3e-05 Score=86.64 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=27.2
Q ss_pred cCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCc-cccccccCCCCCCEEeeeC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLA-CVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L~~L~l~~ 427 (481)
.++++|+.||+|++ +++.+-.++.++|||.|.+.+..-.. .--..+.+|++|+.||++.
T Consensus 170 ~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 170 ASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 34555555555555 34444445555555555554422111 0001344555555555553
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.42 E-value=7.8e-05 Score=50.25 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=26.5
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccc
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIW 364 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp 364 (481)
+|++|++++|.++.+|+.+. +++|++|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 67777777777777777444 778888888888777654
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=4.3e-06 Score=69.90 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred cccceeeccccCCCCCCCCC--CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE--PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~--l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~ 403 (481)
+|...++++|.++++|..|. +..+++|+|.+|.+.++|..+..++.||.|+++.|+ +...|. +..+.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCC
Confidence 56667778888888887776 557888888888888888888888888888888875 666666 55567777777666
Q ss_pred CCCCcccccc
Q 036657 404 CRDLACVRSS 413 (481)
Q Consensus 404 c~~l~~lp~~ 413 (481)
+...++|-.
T Consensus 133 -na~~eid~d 141 (177)
T KOG4579|consen 133 -NARAEIDVD 141 (177)
T ss_pred -CccccCcHH
Confidence 344455533
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00043 Score=61.95 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=68.0
Q ss_pred cccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc-CCCCCcEEeccCCCCCcccCC---CCCCCCC
Q 036657 321 LEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK-KAFKLKYIDISHSQQLVRMLD---LSETPNL 396 (481)
Q Consensus 321 l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L 396 (481)
++...+..-.+++++|.+..++..-.+..|.+|.+.+|+|+.+-..+. -+++|+.|.|.+| ++.++.+ +..+|.|
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKL 115 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcc
Confidence 333444566677777777666554457788888888888887755543 4667888888877 4666655 5667777
Q ss_pred CEEeccCCCCCccccc----cccCCCCCCEEeeeC
Q 036657 397 ERTNLLNCRDLACVRS----SIENFNNLSMLCFKG 427 (481)
Q Consensus 397 ~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~ 427 (481)
++|.+-++. ...... -+..+++|+.||+.+
T Consensus 116 ~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 887777643 222211 256677777777765
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=9.6e-05 Score=79.96 Aligned_cols=111 Identities=18% Similarity=0.121 Sum_probs=76.9
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~ 362 (481)
+.......++.||.|.+.+-.+. ...+..-..++| +|+.||+++++++.+ ..++ +++|++|.+++-.++.
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~-------~~dF~~lc~sFp-NL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFD-------NDDFSQLCASFP-NLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred HHHHHhhhCcccceEEecCceec-------chhHHHHhhccC-ccceeecCCCCccCc-HHHhccccHHHHhccCCCCCc
Confidence 34455566899999999876541 223444556777 899999999988888 3343 8999999998877764
Q ss_pred c--cccccCCCCCcEEeccCCCCCccc--CC-----CCCCCCCCEEeccC
Q 036657 363 I--WKGEKKAFKLKYIDISHSQQLVRM--LD-----LSETPNLERTNLLN 403 (481)
Q Consensus 363 l--p~~~~~L~~L~~L~Ls~~~~l~~l--p~-----~~~l~~L~~L~L~~ 403 (481)
- ...+.+|++|++||+|..++.... .. -..+|+|+.|+.++
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 2 345778999999999887533222 11 23477788887776
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=1.4e-05 Score=75.13 Aligned_cols=155 Identities=18% Similarity=0.182 Sum_probs=90.5
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc-CCCCCCC--CC-CCCceEEEcCCCCccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS-LKMLPFD--FE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~lP~~--~~-l~~L~~L~L~~~~i~~ 362 (481)
..++.+.+|+-|.+.|+.. ...+-..+..=. +|+.|+++.+. +++.... +. +..|.+|+|++|.+..
T Consensus 204 ~iLs~C~kLk~lSlEg~~L--------dD~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRL--------DDPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred HHHHHHHhhhhcccccccc--------CcHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc
Confidence 4566777888888887663 111222222222 67777777652 3221111 12 6678888888875542
Q ss_pred --ccccc-cCCCCCcEEeccCCCCCcccCC----CCCCCCCCEEeccCCCCCcc-ccccccCCCCCCEEeeeCCCCCccC
Q 036657 363 --IWKGE-KKAFKLKYIDISHSQQLVRMLD----LSETPNLERTNLLNCRDLAC-VRSSIENFNNLSMLCFKGCESLRSF 434 (481)
Q Consensus 363 --lp~~~-~~L~~L~~L~Ls~~~~l~~lp~----~~~l~~L~~L~L~~c~~l~~-lp~~i~~L~~L~~L~l~~c~~l~~l 434 (481)
+--.+ .--++|+.|+++++...-.... ....|+|.+|+|++|..+.. .-..+.+++.|++|.++.|..+ .
T Consensus 275 ~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~ 352 (419)
T KOG2120|consen 275 EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--I 352 (419)
T ss_pred hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--C
Confidence 10011 1135677788888742211112 35678888888888776653 2234677888888888888655 2
Q ss_pred CCCC----CCCCCcEEEeecCC
Q 036657 435 PRGI----HFVSPITIDFSFCV 452 (481)
Q Consensus 435 p~~~----~l~~L~~L~l~~c~ 452 (481)
|..+ ..++|.+|++-||-
T Consensus 353 p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 353 PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hHHeeeeccCcceEEEEecccc
Confidence 3322 27888888888765
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0011 Score=59.44 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred ccceeeccccCCCCCCC-CCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-C-CCCCCCCEEeccCC
Q 036657 328 LRYLHWHEYSLKMLPFD-FEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-L-SETPNLERTNLLNC 404 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~-~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~-~~l~~L~~L~L~~c 404 (481)
=+.+++.++.+..+-.. ..+.+...+||++|.+..++ .+..++.|.+|.+++|. +..+.. + ..+++|..|.+.+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Ltn- 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTN- 97 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecC-
Confidence 45566666654433321 12667788899998887764 36678888999998884 777754 4 4567789999988
Q ss_pred CCCccccc--cccCCCCCCEEeeeCCCCCccCCCC----C-CCCCCcEEEeec
Q 036657 405 RDLACVRS--SIENFNNLSMLCFKGCESLRSFPRG----I-HFVSPITIDFSF 450 (481)
Q Consensus 405 ~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~----~-~l~~L~~L~l~~ 450 (481)
+++.++-. .+..+++|++|.+-+ +....-+.- + .+++|++|+.++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhh
Confidence 45555432 255677888888776 344433321 1 378888888876
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00012 Score=70.56 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=122.2
Q ss_pred ccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCc----cccccccccceeeccccCCCCC--------------CC
Q 036657 283 HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQG----LEYLPEELRYLHWHEYSLKMLP--------------FD 344 (481)
Q Consensus 283 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~----l~~l~~~Lr~L~l~~~~l~~lP--------------~~ 344 (481)
.+..+++.++++|+.|++++|-+ ....+.. +.+.. .|..|.+.+|.+...- ..
T Consensus 82 ~~l~~aL~~~~~L~~ldLSDNA~--------G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk 152 (382)
T KOG1909|consen 82 KMLSKALLGCPKLQKLDLSDNAF--------GPKGIRGLEELLSSCT-DLEELYLNNCGLGPEAGGRLGRALFELAVNKK 152 (382)
T ss_pred HHHHHHHhcCCceeEeecccccc--------CccchHHHHHHHHhcc-CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhc
Confidence 34467778888999999999986 2233332 33334 7888999988764211 11
Q ss_pred C-CCCCceEEEcCCCCcccccc-----cccCCCCCcEEeccCCCCCcc-----cCC-CCCCCCCCEEeccCCCCCc----
Q 036657 345 F-EPENLIELNLPYSKVEQIWK-----GEKKAFKLKYIDISHSQQLVR-----MLD-LSETPNLERTNLLNCRDLA---- 408 (481)
Q Consensus 345 ~-~l~~L~~L~L~~~~i~~lp~-----~~~~L~~L~~L~Ls~~~~l~~-----lp~-~~~l~~L~~L~L~~c~~l~---- 408 (481)
. ...+|+++...+|++..-+. .++..+.|+.+.++.|. +.. +-. +..+++|+.|+|.+++.-.
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 1 26789999999998875443 47778899999998874 221 111 6789999999999865332
Q ss_pred cccccccCCCCCCEEeeeCCCCCcc-----CCCCC--CCCCCcEEEeecCCCCCc-----c--C-CcccccceEeeeCcC
Q 036657 409 CVRSSIENFNNLSMLCFKGCESLRS-----FPRGI--HFVSPITIDFSFCVNLTE-----F--P-QISGNIIELKLWYTA 473 (481)
Q Consensus 409 ~lp~~i~~L~~L~~L~l~~c~~l~~-----lp~~~--~l~~L~~L~l~~c~~L~~-----l--p-~~~~~L~~L~L~~~~ 473 (481)
.+...+..+++|+.|++++|. ++. +-..+ ..++|+.|.+.+|. +.. + + ..-+.|..|+|++|.
T Consensus 232 ~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 233456778899999999984 322 11112 27899999999976 332 0 0 024567899999999
Q ss_pred Cc
Q 036657 474 IE 475 (481)
Q Consensus 474 l~ 475 (481)
+.
T Consensus 310 l~ 311 (382)
T KOG1909|consen 310 LG 311 (382)
T ss_pred cc
Confidence 83
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=3.3e-05 Score=64.72 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=78.8
Q ss_pred cccceeeccccCCCCCCCC----CCCCceEEEcCCCCccccccccc-CCCCCcEEeccCCCCCcccCC-CCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKMLPFDF----EPENLIELNLPYSKVEQIWKGEK-KAFKLKYIDISHSQQLVRMLD-LSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~----~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~ 400 (481)
.+..++++.|++-.++... ...+|...+|++|.+..+|+.+. .++.++.|++++|. +.++|. +..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 3445555566555554432 25678888999999988887754 45688889999884 888887 88889999999
Q ss_pred ccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCC
Q 036657 401 LLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRG 437 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~ 437 (481)
++. +.+...|.-+..|.+|-.|+..+ +....+|-.
T Consensus 107 l~~-N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d 141 (177)
T KOG4579|consen 107 LRF-NPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD 141 (177)
T ss_pred ccc-CccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence 988 56777787777788888888775 456566643
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=7.6e-05 Score=70.36 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=98.5
Q ss_pred ccccceeeccccCCC--CCCCCC-CCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC---CCCCCCCCE
Q 036657 326 EELRYLHWHEYSLKM--LPFDFE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD---LSETPNLER 398 (481)
Q Consensus 326 ~~Lr~L~l~~~~l~~--lP~~~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~ 398 (481)
..|++|+++...++. +-.-.. ..+|+-|.|.++++. .+-..+.+=.+|+.|+++.|..+++..- +.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 368899998876542 211112 678888888888776 4555677788999999999987776543 788999999
Q ss_pred EeccCCCCCccccc-cccC-CCCCCEEeeeCCCCCccCCC---CC-CCCCCcEEEeecCCCCCc--cCC--cccccceEe
Q 036657 399 TNLLNCRDLACVRS-SIEN-FNNLSMLCFKGCESLRSFPR---GI-HFVSPITIDFSFCVNLTE--FPQ--ISGNIIELK 468 (481)
Q Consensus 399 L~L~~c~~l~~lp~-~i~~-L~~L~~L~l~~c~~l~~lp~---~~-~l~~L~~L~l~~c~~L~~--lp~--~~~~L~~L~ 468 (481)
|+++.|....+.-. .+.+ -++|..|+++||..--.... .. ..++|.+|+|++|..++. +-. -+..|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999864433211 1122 15788899998743221111 11 388999999999987765 111 245678888
Q ss_pred eeCc
Q 036657 469 LWYT 472 (481)
Q Consensus 469 L~~~ 472 (481)
++.|
T Consensus 345 lsRC 348 (419)
T KOG2120|consen 345 LSRC 348 (419)
T ss_pred hhhh
Confidence 8843
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0016 Score=60.60 Aligned_cols=101 Identities=24% Similarity=0.200 Sum_probs=57.0
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCC--Ccc-cccccccCCCCCcEEeccCCCCCc---ccCCCCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYS--KVE-QIWKGEKKAFKLKYIDISHSQQLV---RMLDLSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~--~i~-~lp~~~~~L~~L~~L~Ls~~~~l~---~lp~~~~l~~L~~L~ 400 (481)
.|..|+..+..++++-..-.+.+|+.|.++.| ++. .++--...+++|++|++++|+ ++ .++.+..+.||..|+
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhh
Confidence 44444444444433322223567777777777 333 344444556788888888774 33 334466677777778
Q ss_pred ccCCCCCcc--cc-ccccCCCCCCEEeeeCC
Q 036657 401 LLNCRDLAC--VR-SSIENFNNLSMLCFKGC 428 (481)
Q Consensus 401 L~~c~~l~~--lp-~~i~~L~~L~~L~l~~c 428 (481)
+.+|..... -- .-+.-+++|++|+-.++
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhcccccccc
Confidence 777754331 11 12445677777766554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.001 Score=64.29 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=35.1
Q ss_pred CCCceEEEcCCCCcc-----cccccccCCCCCcEEeccCCCCCcccC-----C--CCCCCCCCEEeccCCCCCcc----c
Q 036657 347 PENLIELNLPYSKVE-----QIWKGEKKAFKLKYIDISHSQQLVRML-----D--LSETPNLERTNLLNCRDLAC----V 410 (481)
Q Consensus 347 l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~lp-----~--~~~l~~L~~L~L~~c~~l~~----l 410 (481)
+++|++|||++|-++ .+-+.+..+++|+.|++++| .+..-. + -...|+|++|.+.+|..-.. +
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 344455555544333 12233445555555555555 232211 1 12345555555555432111 1
Q ss_pred cccccCCCCCCEEeeeCC
Q 036657 411 RSSIENFNNLSMLCFKGC 428 (481)
Q Consensus 411 p~~i~~L~~L~~L~l~~c 428 (481)
...+...+.|..|++++|
T Consensus 291 a~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 291 AACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHhcchhhHHhcCCcc
Confidence 122334455555555553
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.044 Score=45.95 Aligned_cols=102 Identities=22% Similarity=0.315 Sum_probs=38.6
Q ss_pred ChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcc
Q 036657 285 NPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVE 361 (481)
Q Consensus 285 ~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~ 361 (481)
...+|.++++|+.+.+... ...++. .+.... +|+.+.+.++ +..++.. |. ..+|+.+.+.. .+.
T Consensus 4 ~~~~F~~~~~l~~i~~~~~----------~~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPNT----------IKKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp -TTTTTT-TT--EEEETST------------EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred CHHHHhCCCCCCEEEECCC----------eeEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 4556777777777776532 123332 233333 4555555443 4444443 22 33455555543 333
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEecc
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLL 402 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~ 402 (481)
.++.. +..+++|+.+++..+ +..++. +.+. +|+.+.+.
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 33332 333555555555432 344443 4443 44444443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0036 Score=59.38 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=25.0
Q ss_pred cccceeeccccCCCCCCCC----CCCCceEEEcCCCCcccccccc-cCCCCCcEEeccCC
Q 036657 327 ELRYLHWHEYSLKMLPFDF----EPENLIELNLPYSKVEQIWKGE-KKAFKLKYIDISHS 381 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~----~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~~ 381 (481)
.++.|++.+|.+..-..-+ +++.|++|+|++|.+...-+.. -.+.+|+.|-|.++
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 5555666555544322221 1445555555555443221111 23445555555444
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.0086 Score=56.87 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=33.6
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcccccc---ccccceeeccccC--CCCCCCCC-CCCceEEEcCCCC
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLP---EELRYLHWHEYSL--KMLPFDFE-PENLIELNLPYSK 359 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~---~~Lr~L~l~~~~l--~~lP~~~~-l~~L~~L~L~~~~ 359 (481)
...+.+|+.|++|.++.|+. ...++.+| .+|+.|-+.|+.+ +..-+... ++.+++|+|+.|+
T Consensus 90 ~~ile~lP~l~~LNls~N~L------------~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSL------------SSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HHHHhcCccceEeeccCCcC------------CCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 34567788888888887763 22233332 3677777776643 22222222 4455555555553
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.0092 Score=55.66 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=66.2
Q ss_pred cccceeeccccCCC--CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCC--CCCcccCC-CCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKM--LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHS--QQLVRMLD-LSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~--lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~--~~l~~lp~-~~~l~~L~~L~ 400 (481)
..+.+.+.++.... +..... ..+|+.|++.+..++.+ .++..|++|+.|+++.| +-...++- ...+|+|++|+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 44455555443222 333222 56677777766665544 23445778888888877 33333333 44558888888
Q ss_pred ccCCCCCccccc---cccCCCCCCEEeeeCCCCCccCCCC----CC-CCCCcEEEeecC
Q 036657 401 LLNCRDLACVRS---SIENFNNLSMLCFKGCESLRSFPRG----IH-FVSPITIDFSFC 451 (481)
Q Consensus 401 L~~c~~l~~lp~---~i~~L~~L~~L~l~~c~~l~~lp~~----~~-l~~L~~L~l~~c 451 (481)
++++. +.. ++ .+..+.+|..|++.+|.... +-.. +. +++|..|+-..+
T Consensus 98 ls~Nk-i~~-lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 98 LSGNK-IKD-LSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ecCCc-ccc-ccccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 88743 221 22 24556667777777764433 2221 11 666666655443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.001 Score=62.37 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=62.0
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc--cccC
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK--GEKK 369 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~--~~~~ 369 (481)
+.+.+.|.+.|+.+. .+ .....+| .|.+|.|+-|.+++|.+.-.+.+|++|.|+.|.|..+-+ -+++
T Consensus 18 l~~vkKLNcwg~~L~---------DI-sic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---------DI-SICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCcc---------HH-HHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 456667777776631 11 1224455 778888888888777666567788888888887776533 3677
Q ss_pred CCCCcEEeccCCCCCcccCC------CCCCCCCCEEe
Q 036657 370 AFKLKYIDISHSQQLVRMLD------LSETPNLERTN 400 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~------~~~l~~L~~L~ 400 (481)
|++||.|-|..|.....-+. +.-||||+.|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777777777654444332 34456666654
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.012 Score=33.08 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=9.8
Q ss_pred ceEEEcCCCCccccccccc
Q 036657 350 LIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 350 L~~L~L~~~~i~~lp~~~~ 368 (481)
|++|++++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.00099 Score=62.47 Aligned_cols=80 Identities=19% Similarity=0.085 Sum_probs=44.4
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCC---CCCCceEEEcCCCCcc-c
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDF---EPENLIELNLPYSKVE-Q 362 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~---~l~~L~~L~L~~~~i~-~ 362 (481)
....+|+.|.+|.|+-|.+ ..+ ..+.... +|+.|+|..|.+.++-.-+ ++++|++|.|..|.-. .
T Consensus 35 sic~kMp~lEVLsLSvNkI---------ssL-~pl~rCt-rLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKI---------SSL-APLQRCT-RLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHHhcccceeEEeecccc---------ccc-hhHHHHH-HHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3456677777777776652 112 1234444 6777777777666655442 2666777777665322 1
Q ss_pred cccc-----ccCCCCCcEEe
Q 036657 363 IWKG-----EKKAFKLKYID 377 (481)
Q Consensus 363 lp~~-----~~~L~~L~~L~ 377 (481)
-+.. +.-|++|+.||
T Consensus 104 ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cchhHHHHHHHHcccchhcc
Confidence 1111 34466666664
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.015 Score=32.67 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=12.1
Q ss_pred ccceEeeeCcCCccCCCCC
Q 036657 463 NIIELKLWYTAIEEVPSSI 481 (481)
Q Consensus 463 ~L~~L~L~~~~l~~lP~si 481 (481)
+|++|+|++|+|+.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 3566677766676666653
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.31 Score=55.40 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=83.0
Q ss_pred HHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCCchhhHHHHHhc-cccCchhhHHHhhhhccCCCCCCHHH
Q 036657 112 LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKIS-YDELNSEVKEIFIDIACFFKGEDIDF 190 (481)
Q Consensus 112 i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~~~~i~~~L~lS-Yd~L~~~~K~cFl~~a~Fp~~~~~~~ 190 (481)
...++.+.|+|.|+++..++..+.+.... -......+...+...+...+.-. ++.||++.+..++..|+++ .+..+-
T Consensus 207 ~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l 284 (903)
T PRK04841 207 ESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDAL 284 (903)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHH
Confidence 45789999999999999998777543210 01111222222234566655444 8899999999999999987 466554
Q ss_pred HHHHhcCCCcccccHHHHhhCcceee-cC-C-CceehhHHHHHHHHHHhhc
Q 036657 191 MTRIHDDPMSIHDGLNILVSKSLITI-SD-E-NELQMHDLLQEMGQTIVRQ 238 (481)
Q Consensus 191 l~~~~~~~~~~~~~~~~L~~r~li~~-~~-~-~~~~mHdll~d~~~~i~~~ 238 (481)
+..+.. .-.+...+++|.+.+++.. .+ + ..++.|++++++.+.-...
T Consensus 285 ~~~l~~-~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 285 IVRVTG-EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred HHHHcC-CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 443332 2245677999999999754 22 2 3689999999998876543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.037 Score=28.89 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=5.8
Q ss_pred ccceEeeeCcCCccCC
Q 036657 463 NIIELKLWYTAIEEVP 478 (481)
Q Consensus 463 ~L~~L~L~~~~l~~lP 478 (481)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444555555554444
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.28 Score=40.93 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCE
Q 036657 347 PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSM 422 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~ 422 (481)
..+|+.+.+.. .+..++.. +..+.+|+.+.+..+ +..+++ +.++++|+.+.+.+ .+..++.. +..+++|+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccc
Confidence 33555555553 34444433 445555666666542 555554 55555566666643 33333332 334556666
Q ss_pred EeeeCCCCCccCCCCC-C-CCCCcEEEee
Q 036657 423 LCFKGCESLRSFPRGI-H-FVSPITIDFS 449 (481)
Q Consensus 423 L~l~~c~~l~~lp~~~-~-l~~L~~L~l~ 449 (481)
+.+.. ++..++... . . +|+.+.+.
T Consensus 86 i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 86 IDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccCc--cccEEchhhhcCC-CceEEEEC
Confidence 66542 344444322 1 3 55555543
|
|
| >PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.062 Score=29.24 Aligned_cols=20 Identities=65% Similarity=1.313 Sum_probs=17.7
Q ss_pred CceEEEcCCCCccccccccc
Q 036657 349 NLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 349 ~L~~L~L~~~~i~~lp~~~~ 368 (481)
+|++|+|++++++.||++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998763
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model. |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.0039 Score=57.11 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=76.0
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~ 365 (481)
..+...+...+|+++.|. ...+...+.-+. .+..|+++.+.+..+|.++. +..++.+++..|+.+++|.
T Consensus 36 ~ei~~~kr~tvld~~s~r---------~vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~ 105 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNR---------LVNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK 105 (326)
T ss_pred hhhhccceeeeehhhhhH---------HHhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc
Confidence 344556778889998877 566777777777 88889999999999999988 8899999999999999999
Q ss_pred cccCCCCCcEEeccCCCCCccc
Q 036657 366 GEKKAFKLKYIDISHSQQLVRM 387 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~l 387 (481)
+.+.+++++++++.++.....+
T Consensus 106 s~~k~~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFFRKL 127 (326)
T ss_pred cccccCCcchhhhccCcchHHH
Confidence 9999999999999887644333
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.076 Score=27.69 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=2.9
Q ss_pred cEEeccCC
Q 036657 374 KYIDISHS 381 (481)
Q Consensus 374 ~~L~Ls~~ 381 (481)
+.|++++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.067 Score=48.20 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccC--CC-CCCCCCCEEeccCCCCCcccc-ccccCCCCCCE
Q 036657 348 ENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRML--DL-SETPNLERTNLLNCRDLACVR-SSIENFNNLSM 422 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp--~~-~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~ 422 (481)
..++.+|-+++.|... -+.+.+++.++.|.+.+|.++...- .+ +-.++|+.|++++|+.+++-- ..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3467777777766532 2335667777777888776554321 12 246788888888888776532 23667778888
Q ss_pred EeeeCCC
Q 036657 423 LCFKGCE 429 (481)
Q Consensus 423 L~l~~c~ 429 (481)
|.+.+.+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8777643
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.25 Score=28.75 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=10.6
Q ss_pred cccceEeeeCcCCccCCC
Q 036657 462 GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 462 ~~L~~L~L~~~~l~~lP~ 479 (481)
.+|+.|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345566666666666654
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.25 Score=28.75 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=10.6
Q ss_pred cccceEeeeCcCCccCCC
Q 036657 462 GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 462 ~~L~~L~L~~~~l~~lP~ 479 (481)
.+|+.|+|++|+|+.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345566666666666654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.22 E-value=0.48 Score=44.80 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=112.0
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcccccc---ccccceeeccccCCCCCCC---------------C
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLP---EELRYLHWHEYSLKMLPFD---------------F 345 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~---~~Lr~L~l~~~~l~~lP~~---------------~ 345 (481)
+..+++.+|+.|+..++++|.+ ....|..++.+. ..|..|.+++|.+.-+-.. -
T Consensus 83 ~Ll~aLlkcp~l~~v~LSDNAf--------g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa 154 (388)
T COG5238 83 MLLKALLKCPRLQKVDLSDNAF--------GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAA 154 (388)
T ss_pred HHHHHHhcCCcceeeecccccc--------CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhc
Confidence 4456778888999999988886 444554433222 2678888888765432211 1
Q ss_pred CCCCceEEEcCCCCccccccc-----ccCCCCCcEEeccCCCCCccc--C-----CCCCCCCCCEEeccCCCCCcc----
Q 036657 346 EPENLIELNLPYSKVEQIWKG-----EKKAFKLKYIDISHSQQLVRM--L-----DLSETPNLERTNLLNCRDLAC---- 409 (481)
Q Consensus 346 ~l~~L~~L~L~~~~i~~lp~~-----~~~L~~L~~L~Ls~~~~l~~l--p-----~~~~l~~L~~L~L~~c~~l~~---- 409 (481)
.-+.|++.....|++..-|.. +..-.+|+.+.+..|. ++.- . .+..+.+|+.|+|.+++....
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 245788888888887754432 4444688899888874 4321 0 145678999999998653211
Q ss_pred ccccccCCCCCCEEeeeCCCCCc----cCCCCC---CCCCCcEEEeecCCCCC------ccCC----cccccceEeeeCc
Q 036657 410 VRSSIENFNNLSMLCFKGCESLR----SFPRGI---HFVSPITIDFSFCVNLT------EFPQ----ISGNIIELKLWYT 472 (481)
Q Consensus 410 lp~~i~~L~~L~~L~l~~c~~l~----~lp~~~---~l~~L~~L~l~~c~~L~------~lp~----~~~~L~~L~L~~~ 472 (481)
+...+...+.|+.|++.+|---. ++-..+ ..++|..|...+...=. .+|. ..+-|..|.+.||
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 22335566778999999883211 111112 27888888877643211 1222 1334456777788
Q ss_pred CCccC
Q 036657 473 AIEEV 477 (481)
Q Consensus 473 ~l~~l 477 (481)
+|+++
T Consensus 314 r~~E~ 318 (388)
T COG5238 314 RIKEL 318 (388)
T ss_pred cchhH
Confidence 88664
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.96 E-value=0.091 Score=47.36 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=56.1
Q ss_pred CCCcEEeccCCCCCcccC--CCCCCCCCCEEeccCCCCCcccc-cccc-CCCCCCEEeeeCCCCCccCCCCC--CCCCCc
Q 036657 371 FKLKYIDISHSQQLVRML--DLSETPNLERTNLLNCRDLACVR-SSIE-NFNNLSMLCFKGCESLRSFPRGI--HFVSPI 444 (481)
Q Consensus 371 ~~L~~L~Ls~~~~l~~lp--~~~~l~~L~~L~L~~c~~l~~lp-~~i~-~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~ 444 (481)
..++.+|.+++. +.... .+..++.++.|.+.+|..+...- +-++ -.++|+.|++++|+.+++-.-.. .+++|+
T Consensus 101 ~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 346677888773 43332 37788888999999998665321 1122 35789999999999887643221 488999
Q ss_pred EEEeecCCCC
Q 036657 445 TIDFSFCVNL 454 (481)
Q Consensus 445 ~L~l~~c~~L 454 (481)
.|.+.+.+..
T Consensus 180 ~L~l~~l~~v 189 (221)
T KOG3864|consen 180 RLHLYDLPYV 189 (221)
T ss_pred HHHhcCchhh
Confidence 9998875543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.52 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.5
Q ss_pred CCceEEEcCCCCccccccc
Q 036657 348 ENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~ 366 (481)
.+|++|+|.+|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.52 Score=27.33 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=10.5
Q ss_pred CCceEEEcCCCCccccccc
Q 036657 348 ENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~ 366 (481)
.+|++|+|.+|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.18 E-value=1.7 Score=41.34 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=92.5
Q ss_pred cccceeeccccCCC-----CCCCCC-CCCceEEEcCCCCcc----cccc-------cccCCCCCcEEeccCCCCCcccCC
Q 036657 327 ELRYLHWHEYSLKM-----LPFDFE-PENLIELNLPYSKVE----QIWK-------GEKKAFKLKYIDISHSQQLVRMLD 389 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~-----lP~~~~-l~~L~~L~L~~~~i~----~lp~-------~~~~L~~L~~L~Ls~~~~l~~lp~ 389 (481)
.+..++++||.+.. +...+. -++|++.+++.-... ++|. .+-++++|+..+||.|..-...|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 77888899887643 222222 578888888754221 3333 355789999999999875555554
Q ss_pred -----CCCCCCCCEEeccCCCCCcccc--------------ccccCCCCCCEEeeeCCCCCccCCCCC-----C-CCCCc
Q 036657 390 -----LSETPNLERTNLLNCRDLACVR--------------SSIENFNNLSMLCFKGCESLRSFPRGI-----H-FVSPI 444 (481)
Q Consensus 390 -----~~~l~~L~~L~L~~c~~l~~lp--------------~~i~~L~~L~~L~l~~c~~l~~lp~~~-----~-l~~L~ 444 (481)
+++.++|.+|.+.+|. +..+. ....+-|.|+...... +.+...|... . -..|+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHENLK 188 (388)
T ss_pred HHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcCce
Confidence 7888999999999864 32221 1123456788776653 5666655421 1 24788
Q ss_pred EEEeecCCCCCccCC-----------cccccceEeeeCcCCcc
Q 036657 445 TIDFSFCVNLTEFPQ-----------ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~-----------~~~~L~~L~L~~~~l~~ 476 (481)
++.+..+. ++ |+ ...+|+.|+|..|-++.
T Consensus 189 ~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 189 EVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred eEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 88886632 33 22 24577899999887764
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.14 E-value=0.3 Score=50.79 Aligned_cols=105 Identities=30% Similarity=0.323 Sum_probs=67.5
Q ss_pred cccceeecccc-CCC--C-CCCCCCCCceEEEcCCC--Ccccc----cccccCCCCCcEEeccCCCCCcccC--CC-CCC
Q 036657 327 ELRYLHWHEYS-LKM--L-PFDFEPENLIELNLPYS--KVEQI----WKGEKKAFKLKYIDISHSQQLVRML--DL-SET 393 (481)
Q Consensus 327 ~Lr~L~l~~~~-l~~--l-P~~~~l~~L~~L~L~~~--~i~~l----p~~~~~L~~L~~L~Ls~~~~l~~lp--~~-~~l 393 (481)
.|+.|.+.++. +.. + |......+|++|+++++ .+... +.-...+++|+.|+++++..+...- .+ ..+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 77777777663 332 2 22234789999999873 21111 1234557889999999886433322 12 247
Q ss_pred CCCCEEeccCCCCCcc--ccccccCCCCCCEEeeeCCCCC
Q 036657 394 PNLERTNLLNCRDLAC--VRSSIENFNNLSMLCFKGCESL 431 (481)
Q Consensus 394 ~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~l~~c~~l 431 (481)
++|++|.+.+|..+.. +-.-...+++|++|++++|..+
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 8999999888875422 2233456788999999998876
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.37 E-value=0.074 Score=52.96 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCceEEEcCCCC---cccccccccCCCCCcEEeccCCCCCcccCC--C-CCCCCCCEEeccCCCCCccccc--cccCCCC
Q 036657 348 ENLIELNLPYSK---VEQIWKGEKKAFKLKYIDISHSQQLVRMLD--L-SETPNLERTNLLNCRDLACVRS--SIENFNN 419 (481)
Q Consensus 348 ~~L~~L~L~~~~---i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~-~~l~~L~~L~L~~c~~l~~lp~--~i~~L~~ 419 (481)
..|+.|.++++. ...+-....+.+++.+|++.+|.+++.-.- + ..+++|++|++..|.++....- -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357788888773 233444466788888999998875554321 2 3577889999999887765421 1345788
Q ss_pred CCEEeeeCCCCCccC--CCCC-CCCCCcEEEeecCCCCC
Q 036657 420 LSMLCFKGCESLRSF--PRGI-HFVSPITIDFSFCVNLT 455 (481)
Q Consensus 420 L~~L~l~~c~~l~~l--p~~~-~l~~L~~L~l~~c~~L~ 455 (481)
|.+|+++.|+.+..= .... +.+.|+.+.+.||..++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~ 256 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE 256 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence 999999999877661 1111 36668888788887543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.48 E-value=0.67 Score=46.43 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=52.2
Q ss_pred CCCceEEEcCCC-Ccc--cccccccCCCCCcEEeccCCCCCcccCC--C-CCCCCCCEEeccCCCCCcc--ccccccCCC
Q 036657 347 PENLIELNLPYS-KVE--QIWKGEKKAFKLKYIDISHSQQLVRMLD--L-SETPNLERTNLLNCRDLAC--VRSSIENFN 418 (481)
Q Consensus 347 l~~L~~L~L~~~-~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~-~~l~~L~~L~L~~c~~l~~--lp~~i~~L~ 418 (481)
...|++|+.+++ .+. .+|.-..+..+|+.|.+++|+.+...-- + .+.+.|+.+++.+|..... +-+--.+.+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 445566666554 222 1233244556666666666654433221 1 2445566666665543221 111123445
Q ss_pred CCCEEeeeCCCCCccC-----CCCC-CCCCCcEEEeecCCCCC
Q 036657 419 NLSMLCFKGCESLRSF-----PRGI-HFVSPITIDFSFCVNLT 455 (481)
Q Consensus 419 ~L~~L~l~~c~~l~~l-----p~~~-~l~~L~~L~l~~c~~L~ 455 (481)
.|+.|.++.|..++.. .... ++..|+.+.+++|+.+.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 6666666655544432 1111 25556666666666543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.18 E-value=0.44 Score=49.55 Aligned_cols=108 Identities=22% Similarity=0.188 Sum_probs=71.5
Q ss_pred CCCceEEEcCCC-Cccc--ccccccCCCCCcEEeccC-CCCCcccCC-----CCCCCCCCEEeccCCCCCcccc-cccc-
Q 036657 347 PENLIELNLPYS-KVEQ--IWKGEKKAFKLKYIDISH-SQQLVRMLD-----LSETPNLERTNLLNCRDLACVR-SSIE- 415 (481)
Q Consensus 347 l~~L~~L~L~~~-~i~~--lp~~~~~L~~L~~L~Ls~-~~~l~~lp~-----~~~l~~L~~L~L~~c~~l~~lp-~~i~- 415 (481)
..+|+.|.+.++ .+.. +-......++|+.|++++ +......+. ...+++|+.|++++|..+...- ..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 467788887766 4444 334467789999999987 333333331 4556889999999987543221 1222
Q ss_pred CCCCCCEEeeeCCCCCccCCC--CC-CCCCCcEEEeecCCCC
Q 036657 416 NFNNLSMLCFKGCESLRSFPR--GI-HFVSPITIDFSFCVNL 454 (481)
Q Consensus 416 ~L~~L~~L~l~~c~~l~~lp~--~~-~l~~L~~L~l~~c~~L 454 (481)
.+++|+.|.+.+|..++...- .. .+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 378999999888876433221 11 3788999999999876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 481 | ||||
| 3jrn_A | 176 | Crystal Structure Of Tir Domain From Arabidopsis Th | 2e-16 | ||
| 3ozi_A | 204 | Crystal Structure Of The Tir Domain From The Flax D | 3e-16 |
| >pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176 | Back alignment and structure |
|
| >pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 2e-52
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQ 60
P + + IE S ++++ S++YA+S WCL+ELV I+D +K V+P+FY V+P+ VR Q
Sbjct: 54 PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQ 113
Query: 61 RGTFEKAFVHHENNF-PDKVQKWRDVLTEASNFSGYDSTES 100
G + F H + P+KV KWR LT + SG S +
Sbjct: 114 TGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDD 154
|
| >3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 8e-51
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNG-QIVIPVFYQVDPSDVRK 59
P + AI+ S I + I S YA SKWCL EL +I+ ++ + +I++P+FY VDPSDVR
Sbjct: 81 PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140
Query: 60 QRGTFEKAFVHHENNF-PDKVQKWRDVLTEASNFSGYDSTESR 101
Q G ++KAF H N F +Q W+D L + + G+ ++
Sbjct: 141 QTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKND 183
|
| >3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 7e-40
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQ 60
+I + +S I++ S + +W EL + + ++P++++V +V
Sbjct: 65 RSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASF 124
Query: 61 RGTFEKAFVHHENNF-PDKVQKWR 83
T + + D++
Sbjct: 125 SPTMADKLAFNTSTKSVDEIVADL 148
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 98.0 bits (243), Expect = 1e-21
Identities = 67/398 (16%), Positives = 137/398 (34%), Gaps = 113/398 (28%)
Query: 12 ISIIIFSKDYASSKWCL--------NELVKILD--CKKMNGQIVIPVFYQVDPSDVRKQR 61
+ ++ SK Y + CL + + CK + + F QV +D
Sbjct: 234 LRRLLKSKPYEN---CLLVLLNVQNAKAWNAFNLSCKIL----LTTRFKQV--TDFLSAA 284
Query: 62 GTFEKAFVHHENNF-PDKVQ----KWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEV 116
T + HH PD+V+ K+ D + +L +EV
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----------------------DLPREV 322
Query: 117 VCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNS-EVKEI 175
+ NP L ++ S+ + +N K ++ + +++ S + L E +++
Sbjct: 323 L---TTNPRRLSIIAESI-----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 176 FIDIACFFKGEDIDFMT-------RIHDDPMSIHDGLNILVSKSLITI-SDENELQMHDL 227
F ++ F I + I D M + +N L SL+ E+ + + +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSI 431
Query: 228 LQEMGQTIVRQESAKEPGKRSRL---------WDHND-------------VCYVLKKNKG 265
E+ + + E + +D +D + + LK +
Sbjct: 432 YLEL-----KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 266 TDKVEG---IFLDLS----KINDIHLNPQAFANMSN-LRLLKFYMPKHNDIPIMSSKLHL 317
+++ +FLD KI A ++ N L+ LKFY + I +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PY----ICDNDPKY 541
Query: 318 DQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNL 355
++ + + L +L E +L + +L+ + L
Sbjct: 542 ERLVNAI---LDFLPKIEENLICSKY----TDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-06
Identities = 72/487 (14%), Positives = 130/487 (26%), Gaps = 150/487 (30%)
Query: 45 VIPVFYQ-----VDPSDVRKQ-RGTFEKAFVHHENNFPDKVQKWRDVLTEASNFSGYDST 98
++ VF D DV+ + K + H D V + +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---------WTL 71
Query: 99 ESRQNNRSRDLLELSQEVVCYAD----GNPLALEVLGSSLYHKSKQQWKDKLNN-----L 149
S+Q + +E + +P+ E S+ + + +D+L N
Sbjct: 72 LSKQEEMVQKFVEEVLR----INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 150 KL-ISEPSIYKVLKISYDELNSEV-----------KEIFIDIACFFKGEDIDFMTRIH-- 195
K +S Y L+ + EL K C +I
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 196 -----DDPMSIHDGLNILVSKSLITISDENELQMHDLLQEMGQTIVRQESAKEPGKRSRL 250
+ P ++ L +L + L+ D N D +R S + + RL
Sbjct: 188 NLKNCNSPETV---LEML--QKLLYQIDPNWTSRSD---HSSNIKLRIHSIQA--ELRRL 237
Query: 251 WDHNDVCYVLKKNKGTDKVEGIFLDLSKINDI-HLNPQAFA----------NMSNLRLLK 299
L L L + + N AF L
Sbjct: 238 LKSKPYENCL-------------LVLLNVQNAKAWN--AFNLSCKILLTTRFKQVTDFLS 282
Query: 300 FYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSK 359
H + S L D+ L L+YL P D LP
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLL---LKYLD-------CRPQD----------LP--- 319
Query: 360 VEQIWKGEKKAFKLKYIDISHSQQLVRML--DLSETPN-LERTNLLNCRDLACVRSSIEN 416
++ + + + ++ + + + +NC L + IE+
Sbjct: 320 -REVLTT--------------NPRRLSIIAESIRDGLATWDNWKHVNCDKL---TTIIES 361
Query: 417 F-NNLSMLCFKGC-ESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAI 474
N L ++ + L FP H I ++ L +W+ I
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAH--------------------IPTILLSL-IWFDVI 400
Query: 475 EEVPSSI 481
+ +
Sbjct: 401 KSDVMVV 407
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 2e-13
Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 26/159 (16%)
Query: 111 ELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLK-----------LISEPSIYK 159
++ + + + GNP L + S K+ ++ N L+ S S+
Sbjct: 317 DVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAM 376
Query: 160 VLKISYDELNSEVKEIFIDIACFFKGEDID------------FMTRIHDDPMSIHDGLNI 207
L+ + L+ E + G DI + D L
Sbjct: 377 ALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKR 436
Query: 208 LVSKSLITISDENEL---QMHDLLQEMGQTIVRQESAKE 243
L + + + ++ ++ + +V ++
Sbjct: 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIAN 475
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 34/219 (15%), Positives = 60/219 (27%), Gaps = 44/219 (20%)
Query: 274 LDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLD----QGLEYLPEELR 329
L + + S+ ++ + L+ + L
Sbjct: 17 LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76
Query: 330 YLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD 389
+ L L + Q + L+++ I +
Sbjct: 77 DATQ--------------PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG------- 115
Query: 390 LSETP-------NLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVS 442
L E P LE L L + +SI + N L L + C L P +
Sbjct: 116 LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 443 PITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSSI 481
+ + VNL L+L +T I +P+SI
Sbjct: 175 -ASGEHQGLVNLQ----------SLRLEWTGIRSLPASI 202
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 5/168 (2%)
Query: 274 LDLSKINDIHLNPQAFANMSNLRLLKF-YMPKHNDIPIMSSKLHLDQGLEYLPEELRYLH 332
L L++ N + P + A+++ LR L P+ ++P + + L L+ L
Sbjct: 132 LTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL-VNLQSLR 189
Query: 333 WHEYSLKMLPFDFEP-ENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRM-LDL 390
++ LP +NL L + S + + KL+ +D+ L
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 391 SETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI 438
L+R L +C +L + I L L +GC +L P I
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 41/301 (13%), Positives = 98/301 (32%), Gaps = 60/301 (19%)
Query: 103 NNRSRDLLELSQEVV--CYADGNPLALEVLGSSLYHKSK--QQWKDKLNNLKL------- 151
N + DL E + ++ C G+PL + ++G+ L + + +L N +
Sbjct: 300 NMKKADLPEQAHSIIKEC--KGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSS 357
Query: 152 -ISEPSIYKVLKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIH-----DDPMSIHDGL 205
++ + + IS + L ++K+ + D++ K + + + D L
Sbjct: 358 SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEV--EDIL 415
Query: 206 NILVSKSLITISDENEL---QMHDLLQEM------------------GQTIVRQESAKEP 244
V+KSL+ + +HDL + Q P
Sbjct: 416 QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSP 475
Query: 245 GKRSRLWDHNDVCYVLKKNKGTDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPK 304
+ ++ +N + Y + K ++ + L I + + + +
Sbjct: 476 DQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDE 535
Query: 305 HNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIW 364
+ +L + + L PF N+++L L + +++
Sbjct: 536 KD--------------CAVSENFQEFLSLNGHLLGRQPFP----NIVQLGLCEPETSEVY 577
Query: 365 K 365
+
Sbjct: 578 Q 578
|
| >3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQ 60
+ A+ +S +++ + + WC ++++ L IP+ + + +
Sbjct: 57 ELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPE 115
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 28/162 (17%), Positives = 67/162 (41%), Gaps = 26/162 (16%)
Query: 93 SGYDSTESRQ------NNRSRDLLELSQEVVCYADGNPLALEVLGSSLY-------HKSK 139
SG + + N + DL + ++ G+PL + ++G+ L + +
Sbjct: 284 SGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLR 343
Query: 140 QQWKDKLNNLKLISE---PSIYKVLKISYDELNSEVKEIFIDIACFFKGEDIDFMTRIHD 196
Q + ++ S ++ + + IS + L ++K+ + D++ +D+ T++
Sbjct: 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSIL--QKDVKVPTKVLC 401
Query: 197 -----DPMSIHDGLNILVSKSLITISDENE---LQMHDLLQE 230
+ + D L V+KSL+ + + +HDL +
Sbjct: 402 VLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVD 443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 19/157 (12%)
Query: 274 LDLSKINDI-HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLH 332
L+L N + L F ++ L L N + D G L+YL
Sbjct: 33 LELES-NKLQSLPHGVFDKLTQLTKLSLS---SNGLSFKGCCSQSDFGT----TSLKYLD 84
Query: 333 WHEYSLKMLPFDFEP-ENLIELNLPYSKVEQIWKGEKKAF----KLKYIDISHSQ-QLVR 386
+ + +F E L L+ +S ++Q+ E F L Y+DISH+ ++
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 387 MLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSML 423
+ +LE + I F L L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNL 177
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 27/162 (16%)
Query: 273 FLDLS--KINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRY 330
L LS ++ Q+ ++L+ L N + MSS L +L +
Sbjct: 56 KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSS------NFLGLE-QLEH 105
Query: 331 LHWHEYSLKMLPFD--FEP-ENLIELNLPYSKVEQIWKGEKKAF----KLKYIDISHSQQ 383
L + +LK + F NLI L++ ++ + G F L+ + ++ +
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSF 162
Query: 384 LVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSML 423
L +E NL +L C+ L + + FN+LS L
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA--FNSLSSL 201
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| 3ozi_A | 204 | L6TR; plant TIR domain, plant protein; 2.30A {Linu | 100.0 | |
| 3jrn_A | 176 | AT1G72930 protein; TIR domain arabidopsis thaliana | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 99.78 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.76 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.76 | |
| 3h16_A | 154 | TIR protein; bacteria TIR domain, signaling protei | 99.75 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.75 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.74 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.73 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.73 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.72 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.72 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.72 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.71 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.71 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.71 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.7 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.7 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.7 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.7 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.7 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.7 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.7 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.7 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.7 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.7 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.69 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.69 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.69 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.69 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.69 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.68 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.68 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.68 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.68 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.68 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.68 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.68 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.67 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.67 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.67 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.67 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.67 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.67 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.67 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.67 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.66 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.66 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.65 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.65 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.64 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.64 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.64 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.63 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.63 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.63 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.63 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.62 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.62 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.62 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.61 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.61 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.61 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.61 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.61 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.61 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.61 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.6 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.59 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.59 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.59 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.59 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.59 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.59 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.58 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.58 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.58 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.58 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.58 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.58 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.58 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.57 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.57 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.57 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.57 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.57 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.55 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.55 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.55 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.54 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.53 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.53 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.52 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.52 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.52 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.51 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.5 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.5 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.5 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.5 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.5 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.5 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.48 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.47 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.46 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.45 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.45 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.45 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.44 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.43 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.42 | |
| 3ub2_A | 146 | TOLL/interleukin-1 receptor domain-containing ADA | 99.42 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.42 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.39 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.37 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.37 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.35 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.35 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.34 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.34 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.32 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.32 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.3 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.27 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.27 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.26 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.22 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.22 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.2 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.16 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.13 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.09 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.07 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.06 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.06 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.01 | |
| 1fyx_A | 149 | TOLL-like receptor 2; beta-alpha-beta fold, signal | 98.99 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.99 | |
| 2js7_A | 160 | Myeloid differentiation primary response protein M | 98.97 | |
| 2j67_A | 178 | TOLL like receptor 10; TIR, IL-1, TLR10, membrane, | 98.94 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.9 | |
| 1t3g_A | 159 | X-linked interleukin-1 receptor accessory protein- | 98.9 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.84 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 98.84 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.84 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.8 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.73 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 98.71 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.68 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.68 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.56 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.47 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.37 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.27 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.23 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.07 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.85 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.68 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.2 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.09 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.96 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.78 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.75 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.73 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.45 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.06 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.94 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.87 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.76 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 89.81 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 89.0 |
| >3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=279.23 Aligned_cols=112 Identities=38% Similarity=0.737 Sum_probs=101.8
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhh-CCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCc-hh
Q 036657 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKM-NGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFP-DK 78 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~-~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~-~~ 78 (481)
|+|++||++||++|||||+|||+|+|||+||++|++|++. .|++|+||||+|||+|||+|+|+||+||++|++++. ++
T Consensus 81 ~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~ 160 (204)
T 3ozi_A 81 PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQT 160 (204)
T ss_dssp TTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHH
Confidence 5789999999999999999999999999999999999875 689999999999999999999999999999999988 89
Q ss_pred hhhHHHHHHHhhccCCCCCCCChhhhCChhHHHHHHHHHh
Q 036657 79 VQKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVVC 118 (481)
Q Consensus 79 v~~w~~al~~~~~~~g~~~~~~~q~~rS~~~~~i~~~iv~ 118 (481)
+++||+||++||+++||++.++. +-.++.++||+
T Consensus 161 v~~Wr~AL~~va~lsG~~~~~~~------~e~~~i~~Iv~ 194 (204)
T 3ozi_A 161 IQNWKDALKKVGDLKGWHIGKND------KQGAIADKVSA 194 (204)
T ss_dssp HHHHHHHHHHHHTSCBEEECTTS------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCceecCCCC------CHHHHHHHHHH
Confidence 99999999999999999999875 22345555554
|
| >3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=272.71 Aligned_cols=117 Identities=35% Similarity=0.655 Sum_probs=100.3
Q ss_pred ChHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCc-hhh
Q 036657 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFP-DKV 79 (481)
Q Consensus 1 ~~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~-~~v 79 (481)
++|.+||++|+++|||||+|||+|+|||+||++|++|++.+|++|+||||+|||+|||+|+|+||+||++|+++.. +++
T Consensus 54 ~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~ 133 (176)
T 3jrn_A 54 PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKV 133 (176)
T ss_dssp -----CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999866 899
Q ss_pred hhHHHHHHHhhccCCCCCCCChhhhCChhHHHHHHHHHhhhC
Q 036657 80 QKWRDVLTEASNFSGYDSTESRQNNRSRDLLELSQEVVCYAD 121 (481)
Q Consensus 80 ~~w~~al~~~~~~~g~~~~~~~q~~rS~~~~~i~~~iv~~c~ 121 (481)
++||+||++||+++||++.... ++-.++|+++|.++..
T Consensus 134 ~~Wr~AL~~va~~~G~~~~~~e----~~~i~~Iv~~v~~~l~ 171 (176)
T 3jrn_A 134 LKWRQALTNFAQLSGDCSGDDD----SKLVDKIANEISNKKT 171 (176)
T ss_dssp HHHHHHHHHHTTSCCEECCSCH----HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcccceecCCCH----HHHHHHHHHHHHHHhc
Confidence 9999999999999999995432 1334556666666654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=184.50 Aligned_cols=178 Identities=22% Similarity=0.297 Sum_probs=96.6
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCCCCCCCC----------CCCceEEEc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKMLPFDFE----------PENLIELNL 355 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~lP~~~~----------l~~L~~L~L 355 (481)
..|.++++|++|++++|.+ ..+|..+..++ +|++|++++| ....+|..+. +.+|++|++
T Consensus 121 ~~~~~l~~L~~L~Ls~n~l---------~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 121 DTMQQFAGLETLTLARNPL---------RALPASIASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190 (328)
T ss_dssp SCGGGGTTCSEEEEESCCC---------CCCCGGGGGCT-TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEE
T ss_pred HHHhccCCCCEEECCCCcc---------ccCcHHHhcCc-CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEEC
Confidence 3445555555555555552 24555555555 5555555553 2334554432 555555555
Q ss_pred CCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccC
Q 036657 356 PYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSF 434 (481)
Q Consensus 356 ~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l 434 (481)
++|+++.+|..+..+++|++|++++|. +..+|. ++.+++|++|++++|.....+|..++.+++|++|++++|+.+..+
T Consensus 191 ~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 191 EWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp EEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred cCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence 555555555555555666666665553 445544 555556666666655555555555555666666666655555555
Q ss_pred CCCCC-CCCCcEEEeecCCCCCccCCccccc---ceEeeeCcCCc
Q 036657 435 PRGIH-FVSPITIDFSFCVNLTEFPQISGNI---IELKLWYTAIE 475 (481)
Q Consensus 435 p~~~~-l~~L~~L~l~~c~~L~~lp~~~~~L---~~L~L~~~~l~ 475 (481)
|..+. +++|++|++++|+.++.+|..+++| +.+++..+.+.
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 55443 5566666666655555555544333 44444444433
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-20 Score=181.15 Aligned_cols=200 Identities=18% Similarity=0.262 Sum_probs=169.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+...... .+ +..+.++++|++|++++|.+ ..+|..+..++ +|++|++++|.+..+|..+.
T Consensus 81 ~~l~~L~L~~n~l~--~l-p~~l~~l~~L~~L~L~~n~l---------~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QF-PDQAFRLSHLQHMTIDAAGL---------MELPDTMQQFA-GLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCS--SC-CSCGGGGTTCSEEEEESSCC---------CCCCSCGGGGT-TCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCch--hc-ChhhhhCCCCCEEECCCCCc---------cchhHHHhccC-CCCEEECCCCccccCcHHHh
Confidence 45666666554443 23 34567799999999999984 48899999999 99999999999999999887
Q ss_pred -CCCceEEEcCCC-CcccccccccC---------CCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccc
Q 036657 347 -PENLIELNLPYS-KVEQIWKGEKK---------AFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSI 414 (481)
Q Consensus 347 -l~~L~~L~L~~~-~i~~lp~~~~~---------L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i 414 (481)
+.+|++|++++| .+..+|..+.. +++|++|++++| .+..+|. ++.+++|++|++++| .+..+|..+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l 225 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSALGPAI 225 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCC-CCCcCchhh
Confidence 999999999996 45578877654 999999999999 4889987 999999999999995 577899999
Q ss_pred cCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCcc---cccceEeeeCcCC-ccCCCCC
Q 036657 415 ENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYTAI-EEVPSSI 481 (481)
Q Consensus 415 ~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l-~~lP~si 481 (481)
+.+++|++|++++|+....+|..+. +++|++|++++|..+..+|..+ .+|++|+|++|.+ +.+|.++
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 9999999999999998999998775 9999999999999999999854 4668999997655 7788653
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.2e-20 Score=194.30 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHH-HhcCCchhhHHHHHhccccCchhhHHHhh--------
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNN-LKLISEPSIYKVLKISYDELNSEVKEIFI-------- 177 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~-l~~~~~~~i~~~L~lSYd~L~~~~K~cFl-------- 177 (481)
+++++++++|+++|+|+||||+++|+.|+.++. +|...+.. ++..+..+|.++|++||++||+++|.||+
T Consensus 313 ~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~ 391 (549)
T 2a5y_B 313 EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRS 391 (549)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHH
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhh
Confidence 578999999999999999999999999987742 33333433 44446778999999999999999999999
Q ss_pred ---hhccCCCCCCHHHHHHHhcC--CCc-----------ccccHHHHhhCcceeecCC---CceehhHHHHHHHHHHhhc
Q 036657 178 ---DIACFFKGEDIDFMTRIHDD--PMS-----------IHDGLNILVSKSLITISDE---NELQMHDLLQEMGQTIVRQ 238 (481)
Q Consensus 178 ---~~a~Fp~~~~~~~l~~~~~~--~~~-----------~~~~~~~L~~r~li~~~~~---~~~~mHdll~d~~~~i~~~ 238 (481)
|||+||+++.++ +..|.++ ||. +..+|++|++|||++.... .+|+|||++|++|++++.+
T Consensus 392 l~~~ls~fp~~~~i~-i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 392 ALAFAVVMPPGVDIP-VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HTTGGGSSCTTCCEE-HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HhhheeeeCCCCeee-eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 999999999988 4444444 421 1237999999999998642 4699999999999999987
Q ss_pred ccc
Q 036657 239 ESA 241 (481)
Q Consensus 239 e~~ 241 (481)
++.
T Consensus 471 ~~~ 473 (549)
T 2a5y_B 471 QTI 473 (549)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=170.37 Aligned_cols=184 Identities=17% Similarity=0.227 Sum_probs=116.4
Q ss_pred ccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCc
Q 036657 283 HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKV 360 (481)
Q Consensus 283 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i 360 (481)
.+.+..|.++++|+.|++++|.+ ....+..+..++ +|++|++++|.++.+|.. |. +.+|++|+|++|.+
T Consensus 78 ~~~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 78 IIKVNSFKHLRHLEILQLSRNHI--------RTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp EECTTTTSSCSSCCEEECCSSCC--------CEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred eeCHHHhhCCCCCCEEECCCCcC--------CccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 34456677777777777777763 223335566666 777777777777777664 44 77777777777777
Q ss_pred ccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCC-C
Q 036657 361 EQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFP-R 436 (481)
Q Consensus 361 ~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp-~ 436 (481)
..+|. .+..+++|++|++++|..+..+|. +.++++|++|++++| .+..+| .+..+++|+.|+++++ .+..++ .
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~ 225 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPG 225 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTT
T ss_pred cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChh
Confidence 76655 366677777777777656666665 666777777777764 455565 4666667777777653 455553 3
Q ss_pred CC-CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccCCC
Q 036657 437 GI-HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 437 ~~-~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~ 479 (481)
.+ ++++|+.|++++|. +..++. .+.+|+.|+|++|+|+.+|.
T Consensus 226 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp TTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred hhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 33 36666666666643 555443 13455666666666666654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=171.42 Aligned_cols=184 Identities=17% Similarity=0.212 Sum_probs=106.5
Q ss_pred ccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCc
Q 036657 283 HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKV 360 (481)
Q Consensus 283 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i 360 (481)
.+.+..|.++++|+.|++++|.+ ....+..+..++ +|++|++++|.++.+|.. |. +.+|++|+|++|.+
T Consensus 89 ~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 89 MIQADTFRHLHHLEVLQLGRNSI--------RQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred eECHHHcCCCCCCCEEECCCCcc--------CCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 34556677777777777777763 333345666666 777777777777777665 44 67777777777777
Q ss_pred ccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCC-C
Q 036657 361 EQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFP-R 436 (481)
Q Consensus 361 ~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp-~ 436 (481)
..+|. .+..+++|++|++++|..+..+|. +.++++|++|++++| .+..+| .+..+++|+.|+++++ .+..++ .
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~ 236 (452)
T 3zyi_A 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGN-HFPEIRPG 236 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTS-CCSEECGG
T ss_pred ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccccccEEECcCC-cCcccCcc
Confidence 76655 355666666666666555555554 556666666666653 344444 3555555666665542 344432 2
Q ss_pred CC-CCCCCcEEEeecCCCCCccCC-c---ccccceEeeeCcCCccCCC
Q 036657 437 GI-HFVSPITIDFSFCVNLTEFPQ-I---SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 437 ~~-~l~~L~~L~l~~c~~L~~lp~-~---~~~L~~L~L~~~~l~~lP~ 479 (481)
.+ ++++|+.|++++|. +..++. . +.+|+.|+|++|+|+.+|.
T Consensus 237 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp GGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 22 25555555555543 433322 1 2344555555555555543
|
| >3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-20 Score=161.84 Aligned_cols=85 Identities=15% Similarity=0.316 Sum_probs=72.9
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecCCcccccccCcHHHHHHHHHhcCchhhhh
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVDPSDVRKQRGTFEKAFVHHENNFPDKVQK 81 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~q~g~~~~~~~~~~~~~~~~v~~ 81 (481)
+|.+||++|+++|||+|+||++|.||++||.++++|.+..+++|+||||+|+|+|||+|+|.|+++|..+..... +..
T Consensus 66 ~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~~--~~~ 143 (154)
T 3h16_A 66 SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTKS--VDE 143 (154)
T ss_dssp HHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTSC--HHH
T ss_pred HHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCccc--HHH
Confidence 588999999999999999999999999999999999888889999999999999999999999998865543322 444
Q ss_pred HHHHHHH
Q 036657 82 WRDVLTE 88 (481)
Q Consensus 82 w~~al~~ 88 (481)
+-+.|.+
T Consensus 144 ia~~l~~ 150 (154)
T 3h16_A 144 IVADLMA 150 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=168.28 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=122.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeC-CCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYM-PKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFD 344 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~-~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~ 344 (481)
..++.+.+...........+..|.++++|++|++++ |.+ ...+|..+..++ +|++|++++|.+. .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l--------~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--------VGPIPPAIAKLT-QLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--------ESCCCGGGGGCT-TCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc--------cccCChhHhcCC-CCCEEECcCCeeCCcCCHH
Confidence 456666555443321112346777778888888874 553 345677777777 7777777777776 56666
Q ss_pred CC-CCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCc-ccCC-CCCCC-CCCEEeccCCCCCcccccc------
Q 036657 345 FE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLV-RMLD-LSETP-NLERTNLLNCRDLACVRSS------ 413 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~-~lp~-~~~l~-~L~~L~L~~c~~l~~lp~~------ 413 (481)
+. +.+|++|++++|.+. .+|..+..+++|++|++++|. +. .+|. ++.++ +|++|++++|.....+|..
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcc
Confidence 65 777777777777777 567777777777777777774 44 5665 66665 6777776664332234444
Q ss_pred -----------------ccCCCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEeecCCCCCccCCcc---cccceEeeeCc
Q 036657 414 -----------------IENFNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYT 472 (481)
Q Consensus 414 -----------------i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~ 472 (481)
++.+++|+.|+++++ .+...+..+ .+++|++|++++|.-...+|..+ .+|++|+|++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 445555555555543 233222223 36677777777755222566543 34567777777
Q ss_pred CCc-cCCC
Q 036657 473 AIE-EVPS 479 (481)
Q Consensus 473 ~l~-~lP~ 479 (481)
.++ .+|.
T Consensus 279 ~l~~~ip~ 286 (313)
T 1ogq_A 279 NLCGEIPQ 286 (313)
T ss_dssp EEEEECCC
T ss_pred cccccCCC
Confidence 775 4553
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-17 Score=157.04 Aligned_cols=194 Identities=17% Similarity=0.178 Sum_probs=157.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc-CCCCC-CC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS-LKMLP-FD 344 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~lP-~~ 344 (481)
..++.+.+..... ..+.+..|.++++|+.|++++|.+ ....|..+..++ +|++|++++|. +..++ ..
T Consensus 32 ~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l--------~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVL--------ARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp TTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTCT-TCCEEECCSCTTCCCCCTTT
T ss_pred CCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCcc--------ceeCHhhcCCcc-CCCEEeCCCCCCccccCHHH
Confidence 4566666654443 345667899999999999999884 344477888898 99999999997 88884 45
Q ss_pred CC-CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCC
Q 036657 345 FE-PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNN 419 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~ 419 (481)
+. +.+|++|++++|.+..+ |..+..+++|++|++++|. +..+|. ++.+++|++|++++| .+..+|.. +..+++
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHS 178 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccc
Confidence 65 89999999999999987 5568899999999999995 778875 889999999999995 56777764 889999
Q ss_pred CCEEeeeCCCCCccC-CCCCC-CCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCc
Q 036657 420 LSMLCFKGCESLRSF-PRGIH-FVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIE 475 (481)
Q Consensus 420 L~~L~l~~c~~l~~l-p~~~~-l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~ 475 (481)
|++|+++++ .+..+ |..+. +++|+.|++++|. +..+|. ...+|++|++++|.+.
T Consensus 179 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 179 LDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCEEECCCC-cccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence 999999985 56665 55554 9999999999974 777774 2567899999999875
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-18 Score=169.71 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=118.2
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~ 346 (481)
.++.+.+..+.. ..+.+..|.++++|+.|++++|.+ ....|..+..++ +|++|++++|.++.+|.. |.
T Consensus 53 ~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 53 AVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGI--------NTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHT
T ss_pred cCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCcc--------CccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhC
Confidence 455555544433 234556778888888888888774 333455677777 888888888888888776 54
Q ss_pred -CCCceEEEcCCCCcccccc--cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 036657 347 -PENLIELNLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNLS 421 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~ 421 (481)
+.+|++|++++|.++.+|. .+..+++|++|++++|..+..++. ++++++|++|++++|......|..++.+++|+
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 7888888888888888876 577788888888888755666653 77888888888887654344466677777777
Q ss_pred EEeeeCCCCCccCCCCC--CCCCCcEEEeecC
Q 036657 422 MLCFKGCESLRSFPRGI--HFVSPITIDFSFC 451 (481)
Q Consensus 422 ~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c 451 (481)
+|+++++ .+..+|... .+++|+.|++++|
T Consensus 202 ~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 202 HLILHMK-QHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEECS-CSTTHHHHHHHHTTTEEEEEEESC
T ss_pred eecCCCC-ccccchhhhhhhcccccEEECCCC
Confidence 7777753 455554432 2556666666654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=161.02 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=155.7
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+....... + ..+..+++|+.|++++|.+ ..++. +..++ +|++|++++|.++.+|....
T Consensus 41 ~~L~~L~l~~~~i~~--l--~~~~~l~~L~~L~L~~n~i---------~~~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~ 105 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT--I--EGVQYLNNLIGLELKDNQI---------TDLAP-LKNLT-KITELELSGNPLKNVSAIAG 105 (308)
T ss_dssp HTCCEEECTTSCCCC--C--TTGGGCTTCCEEECCSSCC---------CCCGG-GTTCC-SCCEEECCSCCCSCCGGGTT
T ss_pred CCcCEEEeeCCCccC--c--hhhhccCCCCEEEccCCcC---------CCChh-HccCC-CCCEEEccCCcCCCchhhcC
Confidence 345566555443322 2 2588899999999999883 44555 88888 99999999999999875445
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
+.+|++|++++|+++.++. +..+++|++|++++| .+..+|.++.+++|++|++++| .+..++. +..+++|+.|+++
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKAD 181 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECC
Confidence 9999999999999998875 899999999999999 4888888999999999999996 5677776 8999999999999
Q ss_pred CCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCCC
Q 036657 427 GCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 427 ~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP~ 479 (481)
+ +.+..++....+++|+.|++++|. +..+|. .+.+|+.|++++|.++..|.
T Consensus 182 ~-n~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 182 D-NKISDISPLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp S-SCCCCCGGGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred C-CccCcChhhcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCeeecCCe
Confidence 7 478888764459999999999975 777775 25578999999999987664
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=164.05 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=122.1
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CC-CceEEEcCCCCcc-
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PE-NLIELNLPYSKVE- 361 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~-~L~~L~L~~~~i~- 361 (481)
+..|.++++|++|++++|.+ ...+|..+..++ +|++|++++|.+. .+|..+. +. +|++|++++|.+.
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l--------~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNAL--------SGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEE--------ESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred CHHHhCCCCCCEEeCCCCcc--------CCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 44555566666666665552 224555666666 6666666666665 5555544 44 6666666666665
Q ss_pred cccccccCCCCCcEEeccCCCCCc-ccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCc-cCCCCC
Q 036657 362 QIWKGEKKAFKLKYIDISHSQQLV-RMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLR-SFPRGI 438 (481)
Q Consensus 362 ~lp~~~~~L~~L~~L~Ls~~~~l~-~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~-~lp~~~ 438 (481)
.+|..+..+. |++|++++|. +. ..|. ++.+++|++|++++|. +...++.++.+++|++|+++++ .+. .+|..+
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l 264 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGL 264 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSS-CCEECCCGGG
T ss_pred cCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCC-cccCcCChHH
Confidence 4555566665 7777777664 44 3444 8889999999999854 4444556889999999999985 555 778777
Q ss_pred C-CCCCcEEEeecCCCCCccCCc--ccccceEeeeCcC-CccCC
Q 036657 439 H-FVSPITIDFSFCVNLTEFPQI--SGNIIELKLWYTA-IEEVP 478 (481)
Q Consensus 439 ~-l~~L~~L~l~~c~~L~~lp~~--~~~L~~L~L~~~~-l~~lP 478 (481)
. +++|+.|++++|.--..+|.. +.+|+.|++++|. +...|
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 4 999999999997644478874 5567889999887 44444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=161.29 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=89.0
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC--CCC-CCCceEEEcCCCCcccc-
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF--DFE-PENLIELNLPYSKVEQI- 363 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~--~~~-l~~L~~L~L~~~~i~~l- 363 (481)
.+..+++|+.|++++|. ...+|..+..++ +|++|++++|.++.+|. .+. +.+|++|++++|.+...
T Consensus 73 ~~~~~~~L~~L~Ls~n~---------i~~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNG---------VITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp HHHSCSCCCEEECCSCS---------EEEEEEEEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred ccccccccCEEECCCCc---------cccChhhcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 33344444555544444 234444455555 56666666655555543 233 55666666666655533
Q ss_pred cccccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCC-C
Q 036657 364 WKGEKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRG-I 438 (481)
Q Consensus 364 p~~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-~ 438 (481)
+..+..+++|++|++++|. +.. +|. +..+++|++|++++|. +..+ |..++.+++|++|++++ +.+..++.. +
T Consensus 143 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~ 219 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPY 219 (306)
T ss_dssp TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGG
T ss_pred hhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCC-CccCccChhhc
Confidence 3335555666666666553 332 444 5556666666666543 3333 44555566666666664 344444432 2
Q ss_pred -CCCCCcEEEeecCCCCCc-cCCc----ccccceEeeeCcCCc
Q 036657 439 -HFVSPITIDFSFCVNLTE-FPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 439 -~l~~L~~L~l~~c~~L~~-lp~~----~~~L~~L~L~~~~l~ 475 (481)
.+++|+.|++++|. +.. .|.. ..+|++|+|++|.+.
T Consensus 220 ~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 220 KCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCCee
Confidence 25666666666654 332 2221 134556666666554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=161.71 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=60.6
Q ss_pred CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc---ccccc
Q 036657 390 LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI---SGNII 465 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~---~~~L~ 465 (481)
++.+++|++|++++|......|..++.+++|+.|++++ +.+..+|.... +++|++|++++|. +..+|.. +.+|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCC
Confidence 44556677777776543333466677788888888876 46777776553 7888888888864 7777764 35678
Q ss_pred eEeeeCcCCccCCC
Q 036657 466 ELKLWYTAIEEVPS 479 (481)
Q Consensus 466 ~L~L~~~~l~~lP~ 479 (481)
+|++++|.|+.+|.
T Consensus 322 ~L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 322 NLYLDHNSIVTLKL 335 (390)
T ss_dssp EEECCSSCCCCCCC
T ss_pred EEECCCCccceeCc
Confidence 88888888877663
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=163.93 Aligned_cols=177 Identities=19% Similarity=0.281 Sum_probs=117.0
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~ 346 (481)
.++.+.+..+. ...+.+..|.++++|+.|++++|.+ ....|..+..++ +|++|++++|.++.+|.. |.
T Consensus 33 ~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~i--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 33 ETRLLDLGKNR--IKTLNQDEFASFPHLEELELNENIV--------SAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp TCSEEECCSSC--CCEECTTTTTTCTTCCEEECTTSCC--------CEECTTTTTTCT-TCCEEECCSSCCCSCCTTSST
T ss_pred CCcEEECCCCc--cceECHhHccCCCCCCEEECCCCcc--------CEeChhhhhCCc-cCCEEECCCCcCCccCccccc
Confidence 44555444333 3345567788888888888888874 344577788888 888888888888888875 44
Q ss_pred -CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCC
Q 036657 347 -PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLS 421 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~ 421 (481)
+.+|++|+|++|.+..+ |..+..+++|++|++++|. +..++. ++++++|++|++++| .+..+|. .+.++++|+
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLI 179 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCC
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCc
Confidence 88888888888888766 4457788888888888874 555543 778888888888875 3444443 356666666
Q ss_pred EEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccC
Q 036657 422 MLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 422 ~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp 458 (481)
.|+++++ .+..++. .+ .+++|+.|++++|..+..+|
T Consensus 180 ~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 180 VLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp EEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred EEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccC
Confidence 6666653 3444433 22 25555555555554444444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=156.12 Aligned_cols=181 Identities=22% Similarity=0.253 Sum_probs=116.9
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI 363 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l 363 (481)
+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.++.+|..+. .+|++|++++|.+..+
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNKI--------SKISPGAFAPLV-KLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKV 136 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCC--------CCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBB
T ss_pred eChhhhccCCCCCEEECCCCcC--------CeeCHHHhcCCC-CCCEEECCCCcCCccChhhc-ccccEEECCCCccccc
Confidence 4445566677777777776663 223355666666 66666666666666665543 4555555555555544
Q ss_pred cc---------------------------cccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccc-cccc
Q 036657 364 WK---------------------------GEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACV-RSSI 414 (481)
Q Consensus 364 p~---------------------------~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~l-p~~i 414 (481)
+. .+..+++|++|++++|. +..+|. +. ++|++|++++|. +..+ |..+
T Consensus 137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~ 212 (330)
T 1xku_A 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNK-ITKVDAASL 212 (330)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSC-CCEECTGGG
T ss_pred CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEECCCCc-CCccCHHHh
Confidence 33 34445555555555552 444544 21 566677777654 3333 5678
Q ss_pred cCCCCCCEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccCCcc---cccceEeeeCcCCccCCCC
Q 036657 415 ENFNNLSMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 415 ~~L~~L~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l~~lP~s 480 (481)
+.+++|+.|++++ +.+..++. .+ .+++|++|++++|. +..+|..+ .+|++|++++|.|+.+|..
T Consensus 213 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 213 KGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp TTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChh
Confidence 8889999999997 46776665 34 48999999999974 88888754 4678999999999988763
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=160.84 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=46.0
Q ss_pred cccCCCCCCEEeeeCCCCCccC-CCCC-CCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCccCCCC
Q 036657 413 SIENFNNLSMLCFKGCESLRSF-PRGI-HFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 413 ~i~~L~~L~~L~l~~c~~l~~l-p~~~-~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
.++.+++|++|+++++ .+..+ |..+ ++++|++|++++|. +..+|.. +++|++|+|++|.++.+|..
T Consensus 243 ~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 313 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERN 313 (390)
T ss_dssp GGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred HHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCcc
Confidence 4566777777777764 45544 4444 38888888888854 7777763 45678888888888877753
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-17 Score=151.27 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=88.3
Q ss_pred ChHhhccCCCCcEEEEeCCCCCCCcccCcceecC-Cccccccccccceeecc-ccCCCCCCC-CC-CCCceEEEcCCCCc
Q 036657 285 NPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHE-YSLKMLPFD-FE-PENLIELNLPYSKV 360 (481)
Q Consensus 285 ~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~-~~l~~lP~~-~~-l~~L~~L~L~~~~i 360 (481)
.+..|.++++|+.|++++|.. ...++ ..+..++ +|++|++++ +.++.+|.. |. +.+|++|++++|.+
T Consensus 47 ~~~~~~~l~~L~~L~l~~n~~--------l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 47 PSHAFSNLPNISRIYVSIDVT--------LQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp CTTTTTTCTTCCEEEEECCSS--------CCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC
T ss_pred CHHHccCCCCCcEEeCCCCCC--------cceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 344555555555555555530 12222 2445555 555555555 555555543 22 55555555555555
Q ss_pred ccccccccCCCCCc---EEeccCCCCCcccCC--CCCCCCCC-EEeccCCCCCccccccccCCCCCCEEeeeCCCCCccC
Q 036657 361 EQIWKGEKKAFKLK---YIDISHSQQLVRMLD--LSETPNLE-RTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSF 434 (481)
Q Consensus 361 ~~lp~~~~~L~~L~---~L~Ls~~~~l~~lp~--~~~l~~L~-~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l 434 (481)
+.+|. +..+++|+ +|++++|..+..+|. +.++++|+ +|+++++ .+..+|......++|+.|+++++..++.+
T Consensus 118 ~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 118 KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEE
T ss_pred ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccC
Confidence 55554 44455554 555555533555554 55555555 5555552 34455544333355555555553335555
Q ss_pred CCCC--CC-CCCcEEEeecCCCCCccCC-cccccceEeeeC
Q 036657 435 PRGI--HF-VSPITIDFSFCVNLTEFPQ-ISGNIIELKLWY 471 (481)
Q Consensus 435 p~~~--~l-~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~~ 471 (481)
|... ++ ++|+.|+++++ .+..+|. .+.+|+.|++++
T Consensus 196 ~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 196 DKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARN 235 (239)
T ss_dssp CTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTT
T ss_pred CHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccC
Confidence 4322 24 55555555553 3555554 244555555543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=152.81 Aligned_cols=169 Identities=16% Similarity=0.083 Sum_probs=97.7
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
++|+.|++++|.+ ....+..+..++ +|++|++++|.++.+|....+.+|++|++++|.+..+|..+..+++
T Consensus 31 ~~l~~L~L~~N~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENLL--------YTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSCC--------SEEEGGGGTTCT-TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTT
T ss_pred CCCCEEEcCCCcC--------CccCHHHhhcCC-CCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCC
Confidence 4566666666653 233344555555 6666666666666665554466666666666666666666666666
Q ss_pred CcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEE
Q 036657 373 LKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVSPITID 447 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~ 447 (481)
|++|++++|. +..+|. |..+++|++|++++| .+..+|.. +..+++|+.|++++ +.++.+|... ++++|+.|+
T Consensus 102 L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 102 LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEE
Confidence 6666666663 555553 566666666666663 34444433 45566666666664 4566666543 266666666
Q ss_pred eecCCCCCccCCcc---cccceEeeeCcCC
Q 036657 448 FSFCVNLTEFPQIS---GNIIELKLWYTAI 474 (481)
Q Consensus 448 l~~c~~L~~lp~~~---~~L~~L~L~~~~l 474 (481)
++++. +..+|..+ .+|+.|+|++|.+
T Consensus 179 L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 179 LQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence 66643 56666532 2345666665554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=153.28 Aligned_cols=176 Identities=20% Similarity=0.258 Sum_probs=150.4
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~ 366 (481)
+.++++|+.+++.++. ...+|..+ +.++++|++++|.+..++. .|. +.+|++|++++|.++.++..
T Consensus 6 ~~~l~~l~~l~~~~~~---------l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN---------LTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73 (290)
T ss_dssp EECSTTCCEEECTTSC---------CSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC
T ss_pred ccccCCccEEECCCCC---------CCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC
Confidence 5678899999999887 45677654 3499999999999998864 455 99999999999999998875
Q ss_pred ccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEeeeCCCCCccCCCCC--CCCC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVR-SSIENFNNLSMLCFKGCESLRSFPRGI--HFVS 442 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~ 442 (481)
..+++|++|++++| .+..+|. +..+++|++|+++++ .+..+| ..++.+++|++|++++ +.+..+|... .+++
T Consensus 74 -~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPK 149 (290)
T ss_dssp -SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTT
T ss_pred -CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccC
Confidence 88999999999999 4889998 889999999999995 567776 5589999999999997 5788888764 4999
Q ss_pred CcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCCCC
Q 036657 443 PITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPSSI 481 (481)
Q Consensus 443 L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~si 481 (481)
|+.|+++++ ++..+|.. +.+|+.|+|++|.|+.+|.++
T Consensus 150 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 150 LEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp CCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 999999996 48899863 467899999999999999763
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=169.31 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=59.8
Q ss_pred CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc---ccccc
Q 036657 390 LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI---SGNII 465 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~---~~~L~ 465 (481)
++.+++|++|++++|......|..++.+++|+.|++++ +.+..+|.... +++|+.|++++|. +..+|.. +.+|+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 327 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence 44566677777776544344466677777788888776 46777776654 7788888888764 6677764 34667
Q ss_pred eEeeeCcCCccCCC
Q 036657 466 ELKLWYTAIEEVPS 479 (481)
Q Consensus 466 ~L~L~~~~l~~lP~ 479 (481)
.|+|++|.|..+|.
T Consensus 328 ~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 328 NLYLDHNSIVTLKL 341 (597)
T ss_dssp EEECCSSCCCCCCC
T ss_pred EEECCCCCCCCcCh
Confidence 88888877776653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=169.87 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=103.4
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVE 361 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~ 361 (481)
+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.+..+|+. |. +.+|++|+|++|.+.
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQI--------EEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCC--------CEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCHHHHccCCCCcEEECCCCCC--------CCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 3444455555555555555542 222223444454 555555555555554443 22 555555555555555
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccc----------------------------
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACV---------------------------- 410 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~l---------------------------- 410 (481)
.+|.. +..+++|++|++++|. +..+|. ++.+++|++|++++|. +..+
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~ 214 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVE 214 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCS
T ss_pred CCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhh
Confidence 55444 2455555555555552 333332 4555555555554432 1111
Q ss_pred --------------------------------cccccCCCCCCEEeeeCCCCCccC-CCCC-CCCCCcEEEeecCCCCCc
Q 036657 411 --------------------------------RSSIENFNNLSMLCFKGCESLRSF-PRGI-HFVSPITIDFSFCVNLTE 456 (481)
Q Consensus 411 --------------------------------p~~i~~L~~L~~L~l~~c~~l~~l-p~~~-~l~~L~~L~l~~c~~L~~ 456 (481)
+..++.+++|+.|++++| .+..+ |..+ ++++|+.|++++|. +..
T Consensus 215 ~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 292 (597)
T 3oja_B 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVA 292 (597)
T ss_dssp EEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCE
T ss_pred eeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCC
Confidence 234667778888888864 45444 4445 48888888888854 777
Q ss_pred cCCc---ccccceEeeeCcCCccCCCC
Q 036657 457 FPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 457 lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
+|.. +++|+.|+|++|.++.+|.+
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~~i~~~ 319 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLLHVERN 319 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCCCCGGG
T ss_pred CCcccccCCCCcEEECCCCCCCccCcc
Confidence 7764 45778999999888888764
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=157.37 Aligned_cols=173 Identities=16% Similarity=0.232 Sum_probs=148.8
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGE 367 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~ 367 (481)
+..+++|+.|++.++. ...+| .+..++ +|++|++++|.+..+|. +. +.+|++|++++|.++.++ .+
T Consensus 37 ~~~l~~L~~L~l~~~~---------i~~l~-~~~~l~-~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~ 103 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG---------VTTIE-GVQYLN-NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI 103 (308)
T ss_dssp HHHHHTCCEEECTTSC---------CCCCT-TGGGCT-TCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG
T ss_pred HHHcCCcCEEEeeCCC---------ccCch-hhhccC-CCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh
Confidence 4567899999999887 34455 578888 99999999999999988 55 999999999999999886 68
Q ss_pred cCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEE
Q 036657 368 KKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITID 447 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~ 447 (481)
..+++|++|++++|. +..+|.++.+++|++|++++| .+..++. ++.+++|++|++++| .+..++...++++|+.|+
T Consensus 104 ~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~ 179 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLK 179 (308)
T ss_dssp TTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEE
T ss_pred cCCCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEE
Confidence 999999999999995 888888999999999999995 5667765 899999999999975 788887744699999999
Q ss_pred eecCCCCCccCC--cccccceEeeeCcCCccCCC
Q 036657 448 FSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 448 l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP~ 479 (481)
+++|. +..+|. .+.+|++|+|++|.++.+|+
T Consensus 180 l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 180 ADDNK-ISDISPLASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp CCSSC-CCCCGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred CCCCc-cCcChhhcCCCCCCEEEccCCccCcccc
Confidence 99975 888776 35688999999999988763
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-17 Score=156.94 Aligned_cols=172 Identities=17% Similarity=0.203 Sum_probs=104.1
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccC
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKK 369 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~ 369 (481)
..+++|+.|++.+|.+ ..++ .+..++ +|++|++++|.++.+|....+.+|++|++++|.++.+|. +..
T Consensus 43 ~~l~~L~~L~l~~~~i---------~~~~-~~~~l~-~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 43 NELNSIDQIIANNSDI---------KSVQ-GIQYLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp HHHHTCCEEECTTSCC---------CCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred hhcCcccEEEccCCCc---------ccCh-hHhcCC-CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hcc
Confidence 3456666666666652 2333 355566 677777776666666652226667777777766666543 666
Q ss_pred CCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEee
Q 036657 370 AFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFS 449 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~ 449 (481)
+++|++|++++| .+..++.+..+++|++|++++| .+..+ ..++.+++|++|++++| .+..++....+++|+.|+++
T Consensus 111 l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 111 LKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLS 186 (291)
T ss_dssp CTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECC
T ss_pred CCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEECC
Confidence 667777777766 3666666666667777777664 34444 35666667777777653 55555553346667777776
Q ss_pred cCCCCCccCCc--ccccceEeeeCcCCccCC
Q 036657 450 FCVNLTEFPQI--SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 450 ~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP 478 (481)
+|. +..+|.. +.+|+.|++++|.+...|
T Consensus 187 ~N~-i~~l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 187 KNH-ISDLRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SSC-CCBCGGGTTCTTCSEEEEEEEEEECCC
T ss_pred CCc-CCCChhhccCCCCCEEECcCCcccCCc
Confidence 653 6666542 345566677666665544
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=160.52 Aligned_cols=194 Identities=18% Similarity=0.286 Sum_probs=158.6
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD 344 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~ 344 (481)
...++.+.+..+. ...+.+..|.++++|+.|++++|.+ ..+|. .+..++ +|++|++++|.+..+|..
T Consensus 87 l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~ 154 (440)
T 3zyj_A 87 LRHLEILQLSRNH--IRTIEIGAFNGLANLNTLELFDNRL---------TTIPNGAFVYLS-KLKELWLRNNPIESIPSY 154 (440)
T ss_dssp CSSCCEEECCSSC--CCEECGGGGTTCSSCCEEECCSSCC---------SSCCTTTSCSCS-SCCEEECCSCCCCEECTT
T ss_pred CCCCCEEECCCCc--CCccChhhccCCccCCEEECCCCcC---------CeeCHhHhhccc-cCceeeCCCCcccccCHH
Confidence 3456666555443 3346678999999999999999984 44554 688888 999999999999999885
Q ss_pred -CC-CCCceEEEcCC-CCcccccc-cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccc-cccccCCCC
Q 036657 345 -FE-PENLIELNLPY-SKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACV-RSSIENFNN 419 (481)
Q Consensus 345 -~~-l~~L~~L~L~~-~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~ 419 (481)
|. +.+|++|++++ +.+..++. .+..+++|++|++++| .+..+|.+..+++|++|++++|. +..+ |..+..+++
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMH 232 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSC-CCEECTTTTTTCTT
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCc-cCccChhhhccCcc
Confidence 55 99999999998 56777766 4889999999999999 59999999999999999999964 5554 678999999
Q ss_pred CCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCc
Q 036657 420 LSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 420 L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~ 475 (481)
|+.|++++ +.+..++.. + ++++|+.|+|++| ++..+|.. +.+|+.|+|++|.+.
T Consensus 233 L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCcc
Confidence 99999997 467777653 4 4999999999996 48888862 467899999988764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=154.97 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=106.0
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI 363 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l 363 (481)
+.+..|.++++|+.|++++|.+ ....|..+..++ +|++|++++|.++.+|..+. .+|++|++++|.+..+
T Consensus 69 ~~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~ 138 (332)
T 2ft3_A 69 LRKDDFKGLQHLYALVLVNNKI--------SKIHEKAFSPLR-KLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKV 138 (332)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC--------CEECGGGSTTCT-TCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCC
T ss_pred cCHhHhhCCCCCcEEECCCCcc--------CccCHhHhhCcC-CCCEEECCCCcCCccCcccc-ccCCEEECCCCccCcc
Confidence 4455667777777777776663 333355666666 67777777777766666554 6666777776666666
Q ss_pred ccc-ccCCCCCcEEeccCCCCCcc---cCC-CCCC--------------------CCCCEEeccCCCCCcccc-ccccCC
Q 036657 364 WKG-EKKAFKLKYIDISHSQQLVR---MLD-LSET--------------------PNLERTNLLNCRDLACVR-SSIENF 417 (481)
Q Consensus 364 p~~-~~~L~~L~~L~Ls~~~~l~~---lp~-~~~l--------------------~~L~~L~L~~c~~l~~lp-~~i~~L 417 (481)
|.. +..+++|++|++++|. +.. .|. +..+ ++|++|++++|. +..++ ..+..+
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l 216 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRY 216 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTC
T ss_pred CHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHHhcCC
Confidence 543 5666666666666663 321 121 2222 344555555432 23332 456666
Q ss_pred CCCCEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccCCcc---cccceEeeeCcCCccCCC
Q 036657 418 NNLSMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFPQIS---GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 418 ~~L~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l~~lP~ 479 (481)
++|++|++++ +.+..++. .+ .+++|+.|++++|. +..+|..+ .+|+.|++++|.|+.+|.
T Consensus 217 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 217 SKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp TTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccCh
Confidence 6667777665 35555554 23 36677777777653 66666643 345667777777766654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=161.09 Aligned_cols=195 Identities=21% Similarity=0.317 Sum_probs=159.0
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD 344 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~ 344 (481)
...++.+.+..+.. ..+.+..|.++++|+.|++++|.+ ..+|. .+..++ +|++|++++|.+..+|..
T Consensus 98 l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~ 165 (452)
T 3zyi_A 98 LHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWL---------TVIPSGAFEYLS-KLRELWLRNNPIESIPSY 165 (452)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCC---------SBCCTTTSSSCT-TCCEEECCSCCCCEECTT
T ss_pred CCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcC---------CccChhhhcccC-CCCEEECCCCCcceeCHh
Confidence 45566666654433 345678899999999999999984 34554 578888 999999999999999885
Q ss_pred -CC-CCCceEEEcCC-CCccccccc-ccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCC
Q 036657 345 -FE-PENLIELNLPY-SKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNL 420 (481)
Q Consensus 345 -~~-l~~L~~L~L~~-~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L 420 (481)
|. +.+|++|++++ +.+..++.. +..+++|++|++++| .+..+|.+..+++|++|++++|......|..+.++++|
T Consensus 166 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCccCC
Confidence 55 99999999998 577788764 889999999999999 59999999999999999999965444457789999999
Q ss_pred CEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCc
Q 036657 421 SMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~ 475 (481)
+.|+++++ .+..++. .+ ++++|+.|++++| ++..+|.. +.+|+.|+|++|.+.
T Consensus 245 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 245 KKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcC
Confidence 99999974 6666654 44 4999999999997 58888862 467899999998764
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-17 Score=157.97 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=98.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..+.. ..+.+..|.++++|+.|++++|.+ ...+. +..++ +|++|++++|.++.+|..
T Consensus 34 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~-~~~l~-~L~~L~Ls~n~l~~l~~~-- 98 (317)
T 3o53_A 34 WNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL---------YETLD-LESLS-TLRTLDLNNNYVQELLVG-- 98 (317)
T ss_dssp GGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCC---------EEEEE-ETTCT-TCCEEECCSSEEEEEEEC--
T ss_pred CCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcC---------Ccchh-hhhcC-CCCEEECcCCccccccCC--
Confidence 3555555554432 335567788888888888888773 22222 66666 777777777776665532
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccc-cCCCCCCEE
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSI-ENFNNLSML 423 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i-~~L~~L~~L 423 (481)
.+|++|++++|.+..++.. .+++|++|++++|. +..++. ++.+++|++|++++|......|..+ +.+++|++|
T Consensus 99 -~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 99 -PSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp -TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred -CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 4555555555555544332 24455555555552 444432 4445555555555532211122222 244555555
Q ss_pred eeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCccCCC
Q 036657 424 CFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 424 ~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~ 479 (481)
++++ +.++.+|....+++|++|++++|. +..+|.. ..+|+.|+|++|.|+.+|.
T Consensus 175 ~L~~-N~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 175 NLQY-NFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp ECTT-SCCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred ECCC-CcCcccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhh
Confidence 5554 234444443334555555555532 4444432 2234455555555544443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.6e-16 Score=146.71 Aligned_cols=169 Identities=18% Similarity=0.250 Sum_probs=108.4
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCCC-C-CCCceEEEcCCCCccccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFDF-E-PENLIELNLPYSKVEQIWKG-EK 368 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~~-~-l~~L~~L~L~~~~i~~lp~~-~~ 368 (481)
.+|+.|++++|.+ ..++ ..+..++ +|++|++++|.++.+|..+ . +.+|++|++++|.+..+|.. +.
T Consensus 37 ~~l~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 37 ADTKKLDLQSNKL---------SSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp TTCSEEECCSSCC---------SCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCEEECcCCCC---------CeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 4577777776663 2333 3566666 7777777777777776653 3 67777777777777766554 46
Q ss_pred CCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCC
Q 036657 369 KAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVSP 443 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L 443 (481)
.+++|++|++++|. +..+|. ++.+++|++|++++| .+..+|.. ++.+++|+.|++++ +.+..+|.. + ++++|
T Consensus 107 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L 183 (270)
T 2o6q_A 107 QLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTEL 183 (270)
T ss_dssp TCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred cccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCc
Confidence 67777777777763 666654 667777777777774 45555544 56677777777775 356666653 3 36777
Q ss_pred cEEEeecCCCCCccCCc----ccccceEeeeCcCCc
Q 036657 444 ITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 444 ~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~ 475 (481)
++|++++| .+..+|.. +.+|+.|+|++|.+.
T Consensus 184 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 184 KTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECCCC-cCCcCCHHHhccccCCCEEEecCCCee
Confidence 77777775 36666652 345667777766653
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=150.48 Aligned_cols=195 Identities=14% Similarity=0.177 Sum_probs=149.8
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~ 346 (481)
.++.+.+.... ...+.+..|.++++|+.|++++|.+ ....+..+..++ +|++|++++|.++.+|.. |.
T Consensus 29 ~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 29 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCC--------CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTT
T ss_pred CccEEECCCCc--ccccCHhHhccccCCcEEECCCCcC--------CccCHHHccCCc-CCCEEECCCCccCccChhhhc
Confidence 45655554433 3345566888999999999999884 333445788888 999999999999888754 55
Q ss_pred -CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCcccc-ccccCCCCC
Q 036657 347 -PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVR-SSIENFNNL 420 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L 420 (481)
+.+|++|++++|.+..++. .+..+++|++|++++|. +.. +|. ++.+++|++|++++|. +..++ ..+..+++|
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 175 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTC
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhc
Confidence 8999999999999998866 58899999999999985 665 565 8899999999999964 55544 456666666
Q ss_pred C----EEeeeCCCCCccCCCCC-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccC
Q 036657 421 S----MLCFKGCESLRSFPRGI-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEV 477 (481)
Q Consensus 421 ~----~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~l 477 (481)
+ .|++++ +.+..+|... ...+|+.|++++|. +..+|.. ..+|+.|+|++|.+...
T Consensus 176 ~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 176 PLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccceeeecCC-CcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccccc
Confidence 6 889986 5777877655 46689999999965 8888863 45778999999988643
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=149.09 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=150.8
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeecccc-CCCCCCC-CC-CCCceEEEcCC-CCcccccc-c
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYS-LKMLPFD-FE-PENLIELNLPY-SKVEQIWK-G 366 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~-l~~lP~~-~~-l~~L~~L~L~~-~~i~~lp~-~ 366 (481)
.+|+.|++++|.+ ..+|. .+..++ +|++|++++|. ++.+|.. |. +.+|++|++++ |.++.+|. .
T Consensus 31 ~~l~~L~l~~n~l---------~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHL---------RTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCCC---------SEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CcccEEEEeCCcc---------eEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4899999999984 44554 788888 99999999997 9999874 54 89999999998 99999875 5
Q ss_pred ccCCCCCcEEeccCCCCCcccCCCCCCCCCC---EEeccCCCCCcccccc-ccCCCCCC-EEeeeCCCCCccCCCCC-CC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLDLSETPNLE---RTNLLNCRDLACVRSS-IENFNNLS-MLCFKGCESLRSFPRGI-HF 440 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~---~L~L~~c~~l~~lp~~-i~~L~~L~-~L~l~~c~~l~~lp~~~-~l 440 (481)
+..+++|++|++++|. +..+|+++.+++|+ +|+++++..+..+|.. ++.+++|+ .|++++ +.++.+|... ..
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG 178 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT
T ss_pred hCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC
Confidence 7899999999999995 88899999999999 9999997578888765 88999999 999997 5788888754 46
Q ss_pred CCCcEEEeecCCCCCccCCc----c-cccceEeeeCcCCccCCCC
Q 036657 441 VSPITIDFSFCVNLTEFPQI----S-GNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 441 ~~L~~L~l~~c~~L~~lp~~----~-~~L~~L~L~~~~l~~lP~s 480 (481)
++|+.|++++|..+..+|.. . .+|+.|++++|.++.+|..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 89999999998668888752 3 6889999999999999874
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.5e-17 Score=167.27 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=118.4
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..+.. ..+.+..|.++++|++|++++|.+ ....| +..++ +|++|++++|.++.+|..
T Consensus 34 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l--------~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~~-- 98 (487)
T 3oja_A 34 WNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL--------YETLD--LESLS-TLRTLDLNNNYVQELLVG-- 98 (487)
T ss_dssp GGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCC--------EEEEE--CTTCT-TCCEEECCSSEEEEEEEC--
T ss_pred CCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCC--------CCCcc--cccCC-CCCEEEecCCcCCCCCCC--
Confidence 3566666654433 345677889999999999998874 22233 77777 888888888888777643
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccccc-CCCCCCEE
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIE-NFNNLSML 423 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~-~L~~L~~L 423 (481)
.+|++|++++|.+..++.. .+++|++|++++|. +..++. ++.+++|++|++++|......|..+. .+++|++|
T Consensus 99 -~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 99 -PSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp -TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred -CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 5666666666666655442 35666666666663 444432 55666666666666433333444443 56666666
Q ss_pred eeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCccCCCC
Q 036657 424 CFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 424 ~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
++++ +.+..+|....+++|+.|++++|. +..+|.. +.+|+.|+|++|.|+.+|.+
T Consensus 175 ~Ls~-N~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 175 NLQY-NFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp ECTT-SCCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred ecCC-CccccccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchh
Confidence 6665 345555554456666666666643 5555543 23456666666666666543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-17 Score=177.90 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=93.3
Q ss_pred hHhhc--cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc-CCC--CCCCCC-C------CCceEE
Q 036657 286 PQAFA--NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS-LKM--LPFDFE-P------ENLIEL 353 (481)
Q Consensus 286 ~~~f~--~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~--lP~~~~-l------~~L~~L 353 (481)
+..+. ++++|++|++++|.+ ...+|..+..++ +|++|++++|. ++. +|..+. + .+|++|
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l--------~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPN--------LTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTT--------CSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred chhhhhcccCCCCEEEecCCcC--------CccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 34444 677777777777664 455666666666 66777766665 553 565543 3 666666
Q ss_pred EcCCCCcccccc--cccCCCCCcEEeccCCCCCc-ccCCCCCCCCCCEEeccCCCCCccccccccCCCC-CCEEeeeCCC
Q 036657 354 NLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLV-RMLDLSETPNLERTNLLNCRDLACVRSSIENFNN-LSMLCFKGCE 429 (481)
Q Consensus 354 ~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~-~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~l~~c~ 429 (481)
++++|+++.+|. .+..+++|++|++++|. +. .+|.++.+++|++|++++| .+..+|..++.+++ |++|+++++
T Consensus 311 ~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N- 387 (636)
T 4eco_A 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN- 387 (636)
T ss_dssp ECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSS-
T ss_pred ECCCCcCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCC-
Confidence 666666666666 66666666666666664 44 6666666666666666663 34466666666666 666666653
Q ss_pred CCccCCCCCC---CCCCcEEEeecCC
Q 036657 430 SLRSFPRGIH---FVSPITIDFSFCV 452 (481)
Q Consensus 430 ~l~~lp~~~~---l~~L~~L~l~~c~ 452 (481)
.+..+|..+. +++|+.|++++|.
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred cCcccchhhhhcccCccCEEECcCCc
Confidence 4555555432 2245555555543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=161.26 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=89.2
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKV 360 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i 360 (481)
+.+..|.++++|+.|++++|.+ ..+|. .+..++ +|++|++++|.+..+++ .|. +.+|++|++++|.+
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRL---------KLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC---------CSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred eChhhhhCCccCCEEECCCCcC---------CccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence 3345566666666666665552 23332 244455 55555555555554433 233 55555555555555
Q ss_pred ccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC------------------------CCCCcccccc
Q 036657 361 EQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN------------------------CRDLACVRSS 413 (481)
Q Consensus 361 ~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~------------------------c~~l~~lp~~ 413 (481)
..+ +..+..+++|+.|++++| .+..+|. +..+++|+.|++++ |..+..+|..
T Consensus 141 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 141 VYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred ceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 544 223555555555555555 2444443 44455555555554 4444444444
Q ss_pred ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccC
Q 036657 414 IENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 414 i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~l 477 (481)
+....+|+.|++++| .++.+|.. + ++++|+.|++++|. +..++. ...+|++|+|++|+++.+
T Consensus 220 ~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 220 CLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp TTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred cccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceE
Confidence 444444555555442 34444421 1 25555555555543 444443 123455666666666554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=152.57 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=159.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..... ..+....|.++++|+.|++++|.+. .....+..+..++ +|++|++++|.+..+|..+.
T Consensus 28 ~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~~~~~-~L~~L~Ls~n~i~~l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLS------FKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFL 98 (306)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCC------EEEEEEHHHHSCS-CCCEEECCSCSEEEEEEEEE
T ss_pred CCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccC------cccCccccccccc-ccCEEECCCCccccChhhcC
Confidence 4566666654443 3466677899999999999998741 0122355566677 99999999999999998765
Q ss_pred -CCCceEEEcCCCCcccccc--cccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCCc-cccccccCCCCC
Q 036657 347 -PENLIELNLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDLA-CVRSSIENFNNL 420 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L 420 (481)
+.+|++|++++|.+..++. .+..+++|++|++++|. +...+ . ++.+++|++|++++|.... .+|..++.+++|
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 9999999999999998875 68999999999999995 55554 4 8899999999999965333 478889999999
Q ss_pred CEEeeeCCCCCccC-CCCC-CCCCCcEEEeecCCCCCccCC-c---ccccceEeeeCcCCccCCC
Q 036657 421 SMLCFKGCESLRSF-PRGI-HFVSPITIDFSFCVNLTEFPQ-I---SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 421 ~~L~l~~c~~l~~l-p~~~-~l~~L~~L~l~~c~~L~~lp~-~---~~~L~~L~L~~~~l~~lP~ 479 (481)
++|++++| .+..+ |..+ ++++|++|++++|. +..+|. . +.+|+.|++++|.++..++
T Consensus 178 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 178 TFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCH
Confidence 99999975 67776 4455 49999999999965 777765 2 4678999999999976543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=156.18 Aligned_cols=177 Identities=19% Similarity=0.164 Sum_probs=95.8
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCcc--ccccccccceeeccccCCCCCCCCC-C-----CCceEEEcCCCCccc
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGL--EYLPEELRYLHWHEYSLKMLPFDFE-P-----ENLIELNLPYSKVEQ 362 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l--~~l~~~Lr~L~l~~~~l~~lP~~~~-l-----~~L~~L~L~~~~i~~ 362 (481)
++++|+.|++++|.+ ...+|..+ ..++ +|++|++++|.+..+|..+. + .+|++|++++|++..
T Consensus 93 ~l~~L~~L~L~~n~l--------~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 93 GISGLQELTLENLEV--------TGTAPPPLLEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp TTSCCCEEEEEEEBC--------BSCCCCCSSSCCSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred CcCCccEEEccCCcc--------cchhHHHHHHhcCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 456666666666553 33445544 5555 66666666666665554443 2 566666666666665
Q ss_pred cc-ccccCCCCCcEEeccCCCCCcc--cC-CC--CCCCCCCEEeccCCCCCccc---ccc-ccCCCCCCEEeeeCCCCCc
Q 036657 363 IW-KGEKKAFKLKYIDISHSQQLVR--ML-DL--SETPNLERTNLLNCRDLACV---RSS-IENFNNLSMLCFKGCESLR 432 (481)
Q Consensus 363 lp-~~~~~L~~L~~L~Ls~~~~l~~--lp-~~--~~l~~L~~L~L~~c~~l~~l---p~~-i~~L~~L~~L~l~~c~~l~ 432 (481)
++ ..+..+++|++|++++|..... +| .+ +.+++|++|++++| .+..+ +.. +.++++|++|++++ +.+.
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~ 241 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSH-NSLR 241 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTT-SCCC
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCC-CcCC
Confidence 54 4566666666666666642222 12 12 56666666666664 33322 222 24556666666664 3444
Q ss_pred cCC--CCC-CCCCCcEEEeecCCCCCccCCcc-cccceEeeeCcCCccCCC
Q 036657 433 SFP--RGI-HFVSPITIDFSFCVNLTEFPQIS-GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 433 ~lp--~~~-~l~~L~~L~l~~c~~L~~lp~~~-~~L~~L~L~~~~l~~lP~ 479 (481)
..+ ..+ .+++|++|++++|. +..+|..+ .+|++|+|++|+|+.+|.
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC
T ss_pred cccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh
Confidence 433 112 25666666666643 55666533 356666666666665543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=173.14 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=124.6
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CCCceEEEcCCCCcc-c
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYSKVE-Q 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~~i~-~ 362 (481)
+..|..+++|+.|++++|.+ ...+|..+..++ +|++|++++|.+. .+|..+. +.+|++|++++|++. .
T Consensus 459 p~~~~~l~~L~~L~L~~N~l--------~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDL--------TGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCC--------CSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CHHHcCCCCceEEEecCCcc--------cCcCCHHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 34444555555555555543 335566666666 7777777777766 5666665 777777777777776 5
Q ss_pred ccccccCCCCCcEEeccCCCCCcccCC-----------------------------------------------------
Q 036657 363 IWKGEKKAFKLKYIDISHSQQLVRMLD----------------------------------------------------- 389 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~~l~~lp~----------------------------------------------------- 389 (481)
+|..+..+++|++|++++|.....+|.
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 677777777777777777642223331
Q ss_pred ------------------CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeec
Q 036657 390 ------------------LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSF 450 (481)
Q Consensus 390 ------------------~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~ 450 (481)
++.+++|+.|++++|.-...+|..++++++|+.|+++++.--..+|..+. +++|+.|++++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 33456777888887665557888888888888888887544447777774 88888888888
Q ss_pred CCCCCccCCccc---ccceEeeeCcCCc-cCCC
Q 036657 451 CVNLTEFPQISG---NIIELKLWYTAIE-EVPS 479 (481)
Q Consensus 451 c~~L~~lp~~~~---~L~~L~L~~~~l~-~lP~ 479 (481)
|.-...+|..++ +|++|++++|+++ .+|.
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 764447777544 4578888888884 4554
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=173.72 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=107.8
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CCCceEEEcCCCCcc-c
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYSKVE-Q 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~~i~-~ 362 (481)
+..|.++++|+.|++.+|.+ ...+|..+..++ +|++|++++|.+. .+|..+. +.+|++|++++|++. .
T Consensus 435 p~~l~~l~~L~~L~L~~n~l--------~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNML--------EGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCC--------CSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cHHHhcCCCCCEEECCCCcc--------cCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 34455555555555555543 334555555555 6666666666655 4455554 666666666666665 5
Q ss_pred ccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccc-----------------------------
Q 036657 363 IWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRS----------------------------- 412 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~----------------------------- 412 (481)
+|..++.+++|++|++++|.....+|. ++.+++|+.|++++|.....+|.
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 566666666666666666643335554 66666666666666533223332
Q ss_pred -----------------------------------------cccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeec
Q 036657 413 -----------------------------------------SIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSF 450 (481)
Q Consensus 413 -----------------------------------------~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~ 450 (481)
.++.+++|+.|+++++.--..+|..+. +++|+.|++++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 233345566666665433335666554 77788888877
Q ss_pred CCCCCccCCccc---ccceEeeeCcCCc-cCCC
Q 036657 451 CVNLTEFPQISG---NIIELKLWYTAIE-EVPS 479 (481)
Q Consensus 451 c~~L~~lp~~~~---~L~~L~L~~~~l~-~lP~ 479 (481)
|.-...+|..++ +|+.|+|++|+++ .+|.
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 664457776544 4578888888875 5554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-16 Score=151.65 Aligned_cols=201 Identities=15% Similarity=0.186 Sum_probs=144.8
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCccc------------CcceecC-Cccccccccccceee
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIM------------SSKLHLD-QGLEYLPEELRYLHW 333 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~------------~~~~~l~-~~l~~l~~~Lr~L~l 333 (481)
..++.+.+..... ..+.+..|.++++|+.|++++|.+..-... .....++ ..+..++ +|++|++
T Consensus 76 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN-QMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCT-TCCEEEC
T ss_pred CCCCEEECCCCcC--CeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCc-cccEEEC
Confidence 4555555543332 334567788888888888888764200000 0011111 1245555 7777777
Q ss_pred ccccCCC---CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCC
Q 036657 334 HEYSLKM---LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDL 407 (481)
Q Consensus 334 ~~~~l~~---lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l 407 (481)
++|.+.. .|..+. +.+|++|++++|.++.+|..+. ++|++|++++|. +..++ . ++.+++|++|++++|. +
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l 228 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-I 228 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-C
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-C
Confidence 7777653 344455 8899999999999999988764 899999999995 77764 3 8999999999999965 5
Q ss_pred cccc-ccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc----------ccccceEeeeCcCCc
Q 036657 408 ACVR-SSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI----------SGNIIELKLWYTAIE 475 (481)
Q Consensus 408 ~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~----------~~~L~~L~L~~~~l~ 475 (481)
..++ ..++.+++|+.|++++| .+..+|..+. +++|++|++++|. +..+|.. ...++.|++++|.+.
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCccc
Confidence 5554 47999999999999975 7889998775 9999999999965 8888752 245689999999886
Q ss_pred c
Q 036657 476 E 476 (481)
Q Consensus 476 ~ 476 (481)
.
T Consensus 307 ~ 307 (330)
T 1xku_A 307 Y 307 (330)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=145.21 Aligned_cols=172 Identities=20% Similarity=0.259 Sum_probs=142.9
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKK 369 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~ 369 (481)
.+++.++++++. ...+|..+ +.+++.|+++++.++.+|.. |. +.+|++|++++|.++.+|.+ +..
T Consensus 16 ~~~~~l~~~~~~---------l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~ 83 (270)
T 2o6q_A 16 NNKNSVDCSSKK---------LTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83 (270)
T ss_dssp TTTTEEECTTSC---------CSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS
T ss_pred CCCCEEEccCCC---------CCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC
Confidence 356788888776 34566543 44899999999999999874 65 99999999999999999887 488
Q ss_pred CCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCccCCCCC--CCCCCc
Q 036657 370 AFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLRSFPRGI--HFVSPI 444 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~ 444 (481)
+++|++|++++|. +..+|. +..+++|++|+++++ .+..+|. .++.+++|++|++++ +.+..+|... .+++|+
T Consensus 84 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 84 LKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccc
Confidence 9999999999995 888885 789999999999995 4555554 478999999999997 5788888753 499999
Q ss_pred EEEeecCCCCCccCCc----ccccceEeeeCcCCccCCCC
Q 036657 445 TIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~s 480 (481)
.|++++|. +..+|.. +.+|++|+|++|.++.+|..
T Consensus 161 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 161 ELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred eeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 99999975 8887762 46789999999999998864
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=147.39 Aligned_cols=175 Identities=14% Similarity=0.172 Sum_probs=145.6
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC-CCCCC-CCCceEEEcCCCC-cccc-cccc
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML-PFDFE-PENLIELNLPYSK-VEQI-WKGE 367 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-P~~~~-l~~L~~L~L~~~~-i~~l-p~~~ 367 (481)
.++|+.|++++|.+ ....+..+..++ +|++|++++|.+..+ |..|. +.+|++|++++|. +..+ |..+
T Consensus 31 ~~~l~~L~l~~n~i--------~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRI--------SHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTTSCC--------CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeCCcC--------CccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 46899999999984 333345688888 999999999999988 55566 9999999999997 8888 6679
Q ss_pred cCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVS 442 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~ 442 (481)
..+++|++|++++|. +..++. +..+++|++|++++| .+..+|.. ++.+++|++|++++ +.++.+|.. + ++++
T Consensus 102 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHS 178 (285)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTT
T ss_pred cCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccc
Confidence 999999999999995 777754 899999999999995 46666654 88999999999997 578888874 4 4999
Q ss_pred CcEEEeecCCCCCcc-CCc---ccccceEeeeCcCCccCCC
Q 036657 443 PITIDFSFCVNLTEF-PQI---SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 443 L~~L~l~~c~~L~~l-p~~---~~~L~~L~L~~~~l~~lP~ 479 (481)
|+.|++++|. +..+ |.. ..+|+.|++++|.++.+|.
T Consensus 179 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred cCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 9999999976 6665 554 3577999999999998874
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=148.02 Aligned_cols=192 Identities=24% Similarity=0.295 Sum_probs=145.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
..++.+.+....... ...+..+++|+.|++++|.+ ..+ ..+..++ +|++|++++|.++.+|.. |
T Consensus 41 ~~L~~L~l~~~~i~~----~~~l~~l~~L~~L~l~~n~l---------~~~-~~l~~l~-~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS----VQGIQYLPNVRYLALGGNKL---------HDI-SALKELT-NLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp TTCCEEECTTSCCCC----CTTGGGCTTCCEEECTTSCC---------CCC-GGGTTCT-TCCEEECTTSCCCCCCTTTT
T ss_pred cceeeeeeCCCCccc----ccccccCCCCcEEECCCCCC---------CCc-hhhcCCC-CCCEEECCCCccCccChhHh
Confidence 345555555443322 23578899999999998874 223 3677888 999999999999988876 4
Q ss_pred C-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L 420 (481)
. +.+|++|++++|++..+|.. +..+++|++|++++| .+..+|. ++.+++|++|++++| .+..+|.. ++.+++|
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccC
Confidence 4 89999999999999988766 688999999999999 4888876 789999999999996 45566654 6889999
Q ss_pred CEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCCcccccceEeeeCcCC-ccCCCC
Q 036657 421 SMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAI-EEVPSS 480 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l-~~lP~s 480 (481)
++|++++| .+..+|... .+++|+.|++++|+-.... ++++.|+++.|.+ ..+|.+
T Consensus 184 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 184 KDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCT----TTTHHHHHHHHHTGGGBBCT
T ss_pred CEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCccccC----cHHHHHHHHHHhCCCcccCc
Confidence 99999974 677777643 4999999999987633333 3566677776665 355554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=146.79 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=145.4
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc-c
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG-E 367 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~-~ 367 (481)
+..+++|+.|.+.++.+ ..+ ..+..++ +|++|++++|.+..+|....+.+|++|++++|.++.++.. +
T Consensus 37 ~~~l~~L~~L~l~~~~i---------~~~-~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDI---------KSV-QGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCC---------CCC-TTGGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCc---------ccc-cccccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHh
Confidence 46688999999998873 333 3578888 9999999999999887444599999999999999988766 6
Q ss_pred cCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVS 442 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~ 442 (481)
..+++|++|++++|. +..+|. ++.+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|... ++++
T Consensus 106 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 106 DKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCcc
Confidence 899999999999995 888876 899999999999996 56677655 689999999999975 788887754 4999
Q ss_pred CcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCC
Q 036657 443 PITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 443 L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP 478 (481)
|++|++++|. +..+|.. +.+|+.|++++|.+....
T Consensus 183 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 183 LKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 9999999975 7777752 467899999999886443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=174.79 Aligned_cols=178 Identities=21% Similarity=0.253 Sum_probs=126.3
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc-CCC--CCCCCC--------CCCceEEEcCCC
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS-LKM--LPFDFE--------PENLIELNLPYS 358 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~--lP~~~~--------l~~L~~L~L~~~ 358 (481)
.++++|+.|++++|.+ ...+|..+..++ +|++|++++|. ++. +|..+. +++|++|+|++|
T Consensus 488 ~~L~~L~~L~Ls~N~l--------~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPN--------MTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp GGCTTCCEEEEESCTT--------CCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCCCCCEEECcCCCC--------CccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3777777777777764 556777777777 78888887776 653 665432 347888888888
Q ss_pred Ccccccc--cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCC-CCEEeeeCCCCCccCC
Q 036657 359 KVEQIWK--GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNN-LSMLCFKGCESLRSFP 435 (481)
Q Consensus 359 ~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~l~~c~~l~~lp 435 (481)
++..+|. .+..+++|++|++++|. +..+|.++.+++|+.|++++|. +..+|..++.+++ |+.|++++| .+..+|
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp 635 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN-KLKYIP 635 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS-CCCSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC-CCCcCc
Confidence 7777777 77788888888888774 6677777788888888888754 4577777888877 888888864 566777
Q ss_pred CCCC-C--CCCcEEEeecCCCCCccCCcc--------cccceEeeeCcCCccCCC
Q 036657 436 RGIH-F--VSPITIDFSFCVNLTEFPQIS--------GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 436 ~~~~-l--~~L~~L~l~~c~~L~~lp~~~--------~~L~~L~L~~~~l~~lP~ 479 (481)
..+. + ++|+.|++++|.--..+|.+. .+|+.|+|++|.++.+|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~ 690 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence 6553 3 348888888765333333321 267888888888887775
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-17 Score=188.51 Aligned_cols=132 Identities=20% Similarity=0.342 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCC-----------chhhHHHHHhccccCchhhHHH
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLIS-----------EPSIYKVLKISYDELNSEVKEI 175 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~-----------~~~i~~~L~lSYd~L~~~~K~c 175 (481)
+++.+++++|+++|+|+||||+++|+.|+.+. ..|+..++.+.... ...+..+|.+||+.||+++|+|
T Consensus 304 ~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~ 382 (1249)
T 3sfz_A 304 EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDY 382 (1249)
T ss_dssp TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHH
T ss_pred hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHH
Confidence 34567899999999999999999999998775 57999999986543 2469999999999999999999
Q ss_pred hhhhccCCCCCCHH--HHHHHhcCC-CcccccHHHHhhCcceeecCCCc---eehhHHHHHHHHHHhhcc
Q 036657 176 FIDIACFFKGEDID--FMTRIHDDP-MSIHDGLNILVSKSLITISDENE---LQMHDLLQEMGQTIVRQE 239 (481)
Q Consensus 176 Fl~~a~Fp~~~~~~--~l~~~~~~~-~~~~~~~~~L~~r~li~~~~~~~---~~mHdll~d~~~~i~~~e 239 (481)
|+|||+||+++.++ .++.+|.+. ..++.++++|+++||++...++. |+|||++|+++++.+.++
T Consensus 383 ~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 383 YTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999997654 588999877 78889999999999999886664 999999999999887665
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-16 Score=152.62 Aligned_cols=175 Identities=13% Similarity=0.145 Sum_probs=89.5
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
+..+++|+.|++++|.+ ..++. +..++ +|++|++++|.++.+|....+.+|++|++++|.+..++. +.
T Consensus 62 ~~~~~~L~~L~l~~n~i---------~~~~~-~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~ 129 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQI---------TDISP-LSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LA 129 (347)
T ss_dssp GGGCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred hhhcCCccEEEccCCcc---------ccchh-hhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hc
Confidence 45555555555555542 22332 44454 555555555555555432225555555555555555544 45
Q ss_pred CCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCC---------------------CCccccccccCCCCCCEEeeeC
Q 036657 369 KAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCR---------------------DLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~---------------------~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
.+++|++|++++|..+..++.+..+++|++|++++|. .+..++. +..+++|+.|++++
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYV 208 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeeccc
Confidence 5555555555555444444445555555555555432 2333332 44445555555543
Q ss_pred CCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCC
Q 036657 428 CESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 428 c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP 478 (481)
+.+..++....+++|++|++++|. +..+|. ...+|++|++++|.++.+|
T Consensus 209 -n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 209 -NQITDITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp -SCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred -CCCCCCchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCCh
Confidence 233333332236667777777654 555554 2445677777777766553
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=167.23 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=105.3
Q ss_pred cceeeeeecCCcccccccCh-HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNP-QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDF 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~-~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~ 345 (481)
..++.+.+..+... .+.. ..|.++++|+.|++++|.+ .+.+| .+..++ +|++|++++|.+..+|..+
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l--------~g~ip-~~~~l~-~L~~L~L~~N~l~~lp~~l 372 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQL--------EGKLP-AFGSEI-KLASLNLAYNQITEIPANF 372 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCC--------EEECC-CCEEEE-EESEEECCSSEEEECCTTS
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcC--------ccchh-hhCCCC-CCCEEECCCCccccccHhh
Confidence 34455544433332 2222 2677777777777777763 33556 556665 6666666666666666655
Q ss_pred C-CCC-ceEEEcCCCCcccccccccCCC--CCcEEeccCCCCCcccCC-CC-------CCCCCCEEeccCCCCCcccccc
Q 036657 346 E-PEN-LIELNLPYSKVEQIWKGEKKAF--KLKYIDISHSQQLVRMLD-LS-------ETPNLERTNLLNCRDLACVRSS 413 (481)
Q Consensus 346 ~-l~~-L~~L~L~~~~i~~lp~~~~~L~--~L~~L~Ls~~~~l~~lp~-~~-------~l~~L~~L~L~~c~~l~~lp~~ 413 (481)
. +.+ |++|++++|.++.+|..+..+. +|++|++++|.....+|. ++ .+++|++|++++| .+..+|..
T Consensus 373 ~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~ 451 (636)
T 4eco_A 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE 451 (636)
T ss_dssp EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH
T ss_pred hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHH
Confidence 4 555 6666666666666665554433 566666666542233333 44 4555566666553 34455544
Q ss_pred cc-CCCCCCEEeeeCCCCCccCCCCCC--CC-------CCcEEEeecCCCCCccCCcc-----cccceEeeeCcCCccCC
Q 036657 414 IE-NFNNLSMLCFKGCESLRSFPRGIH--FV-------SPITIDFSFCVNLTEFPQIS-----GNIIELKLWYTAIEEVP 478 (481)
Q Consensus 414 i~-~L~~L~~L~l~~c~~l~~lp~~~~--l~-------~L~~L~l~~c~~L~~lp~~~-----~~L~~L~L~~~~l~~lP 478 (481)
+. .+++|++|++++ +.+..+|.... +. +|+.|++++|. +..+|..+ .+|+.|+|++|.++.+|
T Consensus 452 ~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip 529 (636)
T 4eco_A 452 LFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529 (636)
T ss_dssp HHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred HHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcC
Confidence 32 355555555554 34445554331 11 55555555543 44555432 24455555555555555
Q ss_pred C
Q 036657 479 S 479 (481)
Q Consensus 479 ~ 479 (481)
.
T Consensus 530 ~ 530 (636)
T 4eco_A 530 T 530 (636)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=175.48 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=160.9
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCC-CCCCcccCcce-ecCCccc-------cccccccceeeccc
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPK-HNDIPIMSSKL-HLDQGLE-------YLPEELRYLHWHEY 336 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~-~~~~~~~~~~~-~l~~~l~-------~l~~~Lr~L~l~~~ 336 (481)
...++.+.+..+. .....+..|.++++|+.|++++|. + .. .+|..++ .++ +|++|++++|
T Consensus 490 L~~L~~L~Ls~N~--l~~~iP~~l~~L~~L~~L~Ls~N~~l--------sg~~iP~~i~~L~~~~~~l~-~L~~L~Ls~N 558 (876)
T 4ecn_A 490 LKDLTDVELYNCP--NMTQLPDFLYDLPELQSLNIACNRGI--------SAAQLKADWTRLADDEDTGP-KIQIFYMGYN 558 (876)
T ss_dssp CTTCCEEEEESCT--TCCSCCGGGGGCSSCCEEECTTCTTS--------CHHHHHHHHHHHHHCTTTTT-TCCEEECCSS
T ss_pred CCCCCEEECcCCC--CCccChHHHhCCCCCCEEECcCCCCc--------ccccchHHHHhhhhcccccC-CccEEEeeCC
Confidence 4456666665433 233446889999999999999986 4 33 5665444 445 9999999999
Q ss_pred cCCCCCC--CCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCC-CCEEeccCCCCCcccc
Q 036657 337 SLKMLPF--DFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPN-LERTNLLNCRDLACVR 411 (481)
Q Consensus 337 ~l~~lP~--~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~-L~~L~L~~c~~l~~lp 411 (481)
.+..+|. .+. +.+|++|+|++|.+..+| .+..+++|+.|++++|. +..+|. +..+++ |++|++++|. +..+|
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCc
Confidence 9999999 776 999999999999999999 89999999999999995 779997 999999 9999999965 66999
Q ss_pred ccccCCCC--CCEEeeeCCCCCccCCC---CC---CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCC
Q 036657 412 SSIENFNN--LSMLCFKGCESLRSFPR---GI---HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 412 ~~i~~L~~--L~~L~l~~c~~l~~lp~---~~---~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~ 479 (481)
..++.++. |+.|++++|.-...+|. .. .+++|+.|++++|. +..+|.. +.+|+.|+|++|.|+.+|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 88887765 99999998643322332 22 35699999999975 8899973 4688999999999999997
Q ss_pred C
Q 036657 480 S 480 (481)
Q Consensus 480 s 480 (481)
+
T Consensus 715 ~ 715 (876)
T 4ecn_A 715 N 715 (876)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=162.65 Aligned_cols=148 Identities=12% Similarity=0.154 Sum_probs=109.9
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC-CCCCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML-PFDFE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-P~~~~ 346 (481)
.++.+.+..+. ...+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.+..+ |..|.
T Consensus 34 ~l~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 34 STECLEFSFNV--LPTIQNTTFSRLINLTFLDLTRCQI--------YWIHEDTFQSQH-RLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp TCCEEECTTCC--CSEECTTTSTTCTTCSEEECTTCCC--------CEECTTTTTTCT-TCCEEECTTCCCSEECTTTTS
T ss_pred cCcEEEccCCc--cCcCChhHhccCccceEEECCCCcc--------ceeChhhccCcc-ccCeeeCCCCcccccChhhhc
Confidence 45555554433 3345677888999999999998874 455577888888 999999999988876 44565
Q ss_pred -CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCccc--CCCCCCCCCCEEeccCCCCCccc-cccccCCCCCC
Q 036657 347 -PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRM--LDLSETPNLERTNLLNCRDLACV-RSSIENFNNLS 421 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~l--p~~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~ 421 (481)
+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+ |.+..+++|++|+++++. +..+ |..++.+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQAT 180 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCC
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccc
Confidence 88999999999988887 5668889999999999885 6665 556668889999998854 4444 55577777777
Q ss_pred --EEeeeCC
Q 036657 422 --MLCFKGC 428 (481)
Q Consensus 422 --~L~l~~c 428 (481)
.|+++++
T Consensus 181 ~l~L~l~~n 189 (606)
T 3t6q_A 181 NLSLNLNGN 189 (606)
T ss_dssp SEEEECTTC
T ss_pred eeEEecCCC
Confidence 6666653
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-16 Score=154.13 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=147.8
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EK 368 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~ 368 (481)
++|+.|++++|.+ ..+|. .+..++ +|++|++++|.++.+++. |. +.+|++|++++|.++.+|.. +.
T Consensus 52 ~~L~~L~l~~n~i---------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNRI---------TYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TTCCEEECTTSCC---------CEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccCcEEECCCCcC---------cccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 5899999999984 44554 788898 999999999999988654 65 89999999999999999887 88
Q ss_pred CCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEeeeCCCCCccC-CCCCC-CCC
Q 036657 369 KAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLNCRDLACVR-SSIENFNNLSMLCFKGCESLRSF-PRGIH-FVS 442 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~l-p~~~~-l~~ 442 (481)
.+++|++|++++|. +..+|. ++.+++|++|++++|..+..++ ..++.+++|++|++++| .+..+ |..+. +++
T Consensus 122 ~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 122 PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQN 199 (353)
T ss_dssp TCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSE
T ss_pred CCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhcccc
Confidence 99999999999994 888886 8899999999999986677764 56899999999999986 45555 66664 999
Q ss_pred CcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCC
Q 036657 443 PITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 443 L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~ 479 (481)
|++|++++|. +..+|.. ..+|++|++++|.++.+|.
T Consensus 200 L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 200 VSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp EEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred CCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccc
Confidence 9999999975 7888763 5688999999999987653
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=146.64 Aligned_cols=175 Identities=14% Similarity=0.150 Sum_probs=143.7
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccc-ccccC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIW-KGEKK 369 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp-~~~~~ 369 (481)
++|+.|++++|.+ ....+..+..++ +|++|++++|.+..+|.. |. +.+|++|++++|.+..++ ..+..
T Consensus 28 ~~l~~L~ls~n~l--------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPL--------RHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCCC--------CEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCCcc--------cccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 5799999999984 333344788888 999999999999998874 55 999999999999999876 56899
Q ss_pred CCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcc--ccccccCCCCCCEEeeeCCCCCccCCC-CCC-CCCC
Q 036657 370 AFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLAC--VRSSIENFNNLSMLCFKGCESLRSFPR-GIH-FVSP 443 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp~-~~~-l~~L 443 (481)
+++|++|++++|. +..++. ++.+++|++|+++++. +.. +|..++.+++|++|++++| .+..++. .+. +++|
T Consensus 99 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 99 LSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM 175 (276)
T ss_dssp CTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTC
T ss_pred CccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhc
Confidence 9999999999995 777775 8999999999999954 444 7889999999999999974 6777764 232 4555
Q ss_pred c----EEEeecCCCCCccCCc---ccccceEeeeCcCCccCCCC
Q 036657 444 I----TIDFSFCVNLTEFPQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 444 ~----~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
+ .|+++++. +..+|.. ..+|++|+|++|.++.+|..
T Consensus 176 ~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 176 PLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp TTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred cccceeeecCCCc-ccccCccccCCCcccEEECCCCceeecCHh
Confidence 5 89999965 8887763 23789999999999999874
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-15 Score=152.36 Aligned_cols=169 Identities=16% Similarity=0.136 Sum_probs=89.0
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~ 366 (481)
.|..+++|+.|++++|.+ ..+| +..++ +|++|++++|.++.+| +. +.+|++|++++|+++.+|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l---------~~~~--~~~l~-~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~-- 122 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNI---------TTLD--LSQNT-NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD-- 122 (457)
T ss_dssp TGGGCTTCSEEECCSSCC---------SCCC--CTTCT-TCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--
T ss_pred hhcccCCCCEEEccCCcC---------CeEc--cccCC-CCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--
Confidence 355566666666665552 1122 44444 5555555555555553 32 555555555555555543
Q ss_pred ccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCC---------------------CccccccccCCCCCCEEee
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRD---------------------LACVRSSIENFNNLSMLCF 425 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~---------------------l~~lp~~i~~L~~L~~L~l 425 (481)
+..+++|++|++++|. +..+| ++.+++|++|++++|.. +..+| ++.+++|+.|++
T Consensus 123 ~~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l 198 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNC 198 (457)
T ss_dssp CTTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEEC
T ss_pred CCCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEEC
Confidence 4555555555555552 44432 44444444444444433 33443 455555555555
Q ss_pred eCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC-cccccceEeeeCcCCccCCC
Q 036657 426 KGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ-ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 426 ~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~~~~l~~lP~ 479 (481)
++ +.++.++ ...+++|+.|++++|. +..+|- ...+|+.|++++|.++.+|.
T Consensus 199 ~~-N~l~~~~-l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 199 DT-NNITKLD-LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CS-SCCSCCC-CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred cC-CcCCeec-cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCH
Confidence 54 2444442 1236677777777653 666662 23456777777777776664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-16 Score=151.52 Aligned_cols=194 Identities=16% Similarity=0.146 Sum_probs=150.9
Q ss_pred CcceeeeeecCCcccccccChHhh--ccCCCCcEEEEeCCCCCCCcccCcceecCCccccc-----cccccceeeccccC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAF--ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYL-----PEELRYLHWHEYSL 338 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f--~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l-----~~~Lr~L~l~~~~l 338 (481)
...++.+.+....... ..+..+ ..+++|+.|++++|.+ ...|..+..+ + +|++|++++|.+
T Consensus 94 l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~l~~~~~~-~L~~L~L~~N~l 161 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSW---------ATRDAWLAELQQWLKP-GLKVLSIAQAHS 161 (312)
T ss_dssp TSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBC---------SSSSSHHHHHHTTCCT-TCCEEEEESCSC
T ss_pred cCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCC---------cchhHHHHHHHHhhcC-CCcEEEeeCCCC
Confidence 4566666665444321 223333 8899999999999984 3347777766 5 999999999999
Q ss_pred CCCC-CCCC-CCCceEEEcCCCCccc---ccccc--cCCCCCcEEeccCCCCCcccCC-----CCCCCCCCEEeccCCCC
Q 036657 339 KMLP-FDFE-PENLIELNLPYSKVEQ---IWKGE--KKAFKLKYIDISHSQQLVRMLD-----LSETPNLERTNLLNCRD 406 (481)
Q Consensus 339 ~~lP-~~~~-l~~L~~L~L~~~~i~~---lp~~~--~~L~~L~~L~Ls~~~~l~~lp~-----~~~l~~L~~L~L~~c~~ 406 (481)
..+| ..|. +.+|++|++++|++.. +|..+ ..+++|++|++++|. +..+|. +..+++|++|+++++.
T Consensus 162 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~- 239 (312)
T 1wwl_A 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS- 239 (312)
T ss_dssp CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-
T ss_pred ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-
Confidence 9988 4565 9999999999998653 45555 899999999999995 775443 4688999999999964
Q ss_pred Ccccc--ccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCcc
Q 036657 407 LACVR--SSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 407 l~~lp--~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~ 476 (481)
+...+ ..+..+++|++|++++ +.++.+|..+. ++|++|+++++ ++..+|. .+.+|++|+|++|.++.
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~-~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP-AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC-SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred CCcccchhhhhhcCCCCEEECCC-CccChhhhhcc-CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCCCC
Confidence 54433 4567789999999997 57889998776 89999999996 4888887 24567999999999875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=161.22 Aligned_cols=177 Identities=17% Similarity=0.194 Sum_probs=115.9
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC--CCC-CCCceEEEcCCCCccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF--DFE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~--~~~-l~~L~~L~L~~~~i~~ 362 (481)
+..+..+++|+.|++++|. ...+|..+..++ +|++|++++|.+..+++ .+. +.+|++|++++|.+..
T Consensus 369 ~~~~~~~~~L~~L~L~~n~---------l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNG---------AIIMSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp CHHHHCCSCCCEEECCSCS---------EEEECCCCTTCT-TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred hhhhccCCcccEeECCCCc---------cccchhhccCCC-CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence 4556667777777777666 445666667776 77777777777666544 343 7777777777777764
Q ss_pred -ccccccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccC-CCC
Q 036657 363 -IWKGEKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSF-PRG 437 (481)
Q Consensus 363 -lp~~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~ 437 (481)
.|..+..+++|++|++++|. +.. +|. ++.+++|++|++++|......|..++.+++|++|++++| .+..+ |..
T Consensus 439 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 516 (606)
T 3vq2_A 439 DFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSH 516 (606)
T ss_dssp CCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGG
T ss_pred cchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHH
Confidence 45557777777777777774 443 455 677777777777776444444556777777777777765 44444 444
Q ss_pred CC-CCCCcEEEeecCCCCCccCCcc----cccceEeeeCcCCc
Q 036657 438 IH-FVSPITIDFSFCVNLTEFPQIS----GNIIELKLWYTAIE 475 (481)
Q Consensus 438 ~~-l~~L~~L~l~~c~~L~~lp~~~----~~L~~L~L~~~~l~ 475 (481)
+. +++|++|++++|. +..+|..+ .+|++|++++|.+.
T Consensus 517 ~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 43 7777777777764 66777632 24677777777664
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-16 Score=164.42 Aligned_cols=154 Identities=15% Similarity=0.152 Sum_probs=104.1
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGE 367 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~ 367 (481)
.|..+++|+.|++++|.+ ..++. +..++ +|++|++++|.+..+|....+.+|++|+|++|.+..++ .+
T Consensus 60 ~l~~l~~L~~L~Ls~N~l---------~~~~~-l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l 127 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKL---------TDIKP-LTNLK-NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GL 127 (605)
T ss_dssp TGGGCTTCCEEECTTSCC---------CCCGG-GGGCT-TCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GG
T ss_pred HHccCCCCCEEEeeCCCC---------CCChh-hccCC-CCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cc
Confidence 467777777777777763 23333 66666 77777777777777664334777777777777777664 46
Q ss_pred cCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEE
Q 036657 368 KKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITID 447 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~ 447 (481)
..+++|+.|+|++|. +..++.++.+++|+.|+|++| .+..+++ +..+++|+.|+|++| .+..+|....+++|+.|+
T Consensus 128 ~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 128 VHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLE 203 (605)
T ss_dssp GGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEE
T ss_pred cCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEE
Confidence 777777777777773 666666777777777777775 3455544 777777777777763 666665533577777777
Q ss_pred eecCCCCCccC
Q 036657 448 FSFCVNLTEFP 458 (481)
Q Consensus 448 l~~c~~L~~lp 458 (481)
|++|+ +...|
T Consensus 204 L~~N~-l~~~p 213 (605)
T 1m9s_A 204 LFSQE-CLNKP 213 (605)
T ss_dssp CCSEE-EECCC
T ss_pred ccCCc-CcCCc
Confidence 77754 44333
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=162.95 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=142.7
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc-
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK- 365 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~- 365 (481)
.+..+++|+.|++++|.+. .....|..+..++ +|++|++++|.+..+|..+. +.+|++|++++|.+..++.
T Consensus 345 ~~~~l~~L~~L~ls~n~l~------~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALS------FSGCCSYSDLGTN-SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CCCCCTTCCEEECCSSCEE------EEEECCHHHHCCS-CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred hhccCCCCCEEECcCCccC------CCcchhhhhccCC-cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh
Confidence 4456667777777766520 0111366677788 89999999999999997776 8999999999999987754
Q ss_pred -cccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCc-cccccccCCCCCCEEeeeCCCCCccCC-CCC-CC
Q 036657 366 -GEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLA-CVRSSIENFNNLSMLCFKGCESLRSFP-RGI-HF 440 (481)
Q Consensus 366 -~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L~~L~l~~c~~l~~lp-~~~-~l 440 (481)
.+..+++|++|++++|......|. ++.+++|++|++++|.... .+|..++.+++|+.|++++| .+..++ ..+ ++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l 496 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhccc
Confidence 688999999999999963333555 8999999999999975444 26888999999999999986 565554 445 49
Q ss_pred CCCcEEEeecCCCCCcc-CCcc---cccceEeeeCcCCccCCCC
Q 036657 441 VSPITIDFSFCVNLTEF-PQIS---GNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 441 ~~L~~L~l~~c~~L~~l-p~~~---~~L~~L~L~~~~l~~lP~s 480 (481)
++|++|++++|. +..+ |..+ .+|+.|+|++|+|+.+|..
T Consensus 497 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 497 HRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp TTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred ccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 999999999986 5555 6544 4679999999999998874
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-15 Score=156.84 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=39.3
Q ss_pred CCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCCC
Q 036657 418 NNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 418 ~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~s 480 (481)
++|++|++++ +.++.+| ..+++|+.|++++| ++..+|..+.+|+.|+|++|.|+.+|.+
T Consensus 221 ~~L~~L~Ls~-N~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~lp~~ 279 (622)
T 3g06_A 221 SGLKELIVSG-NRLTSLP--VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPES 279 (622)
T ss_dssp TTCCEEECCS-SCCSCCC--CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCSCCGG
T ss_pred CCCCEEEccC-CccCcCC--CCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCcCCHH
Confidence 5566666665 3566666 23567777777775 4677777666777777777777777653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=153.41 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=59.1
Q ss_pred CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCcc-CCc---ccc
Q 036657 390 LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEF-PQI---SGN 463 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~l-p~~---~~~ 463 (481)
++.+++|++|++++|......|..++.+++|++|++++| .+..++. .+ ++++|++|++++|. +..+ |.. +.+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN 372 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChhhcccccc
Confidence 566777777777775433333556777777888888764 5555543 33 37888888888864 5555 433 356
Q ss_pred cceEeeeCcCCccCCCC
Q 036657 464 IIELKLWYTAIEEVPSS 480 (481)
Q Consensus 464 L~~L~L~~~~l~~lP~s 480 (481)
|++|+|++|+|+.+|..
T Consensus 373 L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 373 LKELALDTNQLKSVPDG 389 (455)
T ss_dssp CCEEECCSSCCSCCCTT
T ss_pred ccEEECCCCccccCCHh
Confidence 68888888888887763
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-16 Score=151.57 Aligned_cols=145 Identities=15% Similarity=0.101 Sum_probs=67.2
Q ss_pred cccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccc---cccc--ccCCCCCcEEeccCCCCCcccCC-----CCCCC
Q 036657 327 ELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQ---IWKG--EKKAFKLKYIDISHSQQLVRMLD-----LSETP 394 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~---lp~~--~~~L~~L~~L~Ls~~~~l~~lp~-----~~~l~ 394 (481)
+|++|++++|.+..+|.. +. +.+|++|+|++|++.. ++.. +..+++|++|++++|. ++.+|. ++.++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCC
Confidence 555555555555544432 32 5555555555554432 2211 2445555555555552 443332 23445
Q ss_pred CCCEEeccCCCCCccccccccCC---CCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEee
Q 036657 395 NLERTNLLNCRDLACVRSSIENF---NNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKL 469 (481)
Q Consensus 395 ~L~~L~L~~c~~l~~lp~~i~~L---~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L 469 (481)
+|++|++++|.-....|..++.+ ++|++|++++ +.++.+|..+. ++|+.|++++|. +..+|. .+++|+.|+|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~-~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP-AKLRVLDLSSNR-LNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC-SCCSCEECCSCC-CCSCCCTTSCCCCSCEEC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc-CCCCEEECCCCc-CCCCchhhhCCCccEEEC
Confidence 55555555533222224444444 3555555553 34445554332 455555555532 444332 2344555555
Q ss_pred eCcCCc
Q 036657 470 WYTAIE 475 (481)
Q Consensus 470 ~~~~l~ 475 (481)
++|.++
T Consensus 302 ~~N~l~ 307 (310)
T 4glp_A 302 DGNPFL 307 (310)
T ss_dssp SSTTTS
T ss_pred cCCCCC
Confidence 555553
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=157.00 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=130.6
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEP 347 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 347 (481)
.++.+.+....... ++... .++|+.|++++|.+ ..+| ..++ +|++|++++|.++.+|. +.
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l---~~~L~~L~Ls~N~l---------~~ip---~~l~-~L~~L~Ls~N~l~~ip~-l~- 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNL---PPQITVLEITQNAL---------ISLP---ELPA-SLEYLDACDNRLSTLPE-LP- 119 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCC---CTTCSEEECCSSCC---------SCCC---CCCT-TCCEEECCSSCCSCCCC-CC-
T ss_pred CccEEEeCCCCCCc--cCHhH---cCCCCEEECcCCCC---------cccc---cccC-CCCEEEccCCCCCCcch-hh-
Confidence 45555555443322 33322 36899999998884 3566 3344 89999999999988888 54
Q ss_pred CCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeC
Q 036657 348 ENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
.+|++|+|++|+++.+|. .+++|++|++++|. +..+|. .+++|++|++++| .+..+|. ++ ++|++|++++
T Consensus 120 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVST 189 (571)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCS
T ss_pred cCCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcC
Confidence 389999999999988887 68899999999984 778887 6788999999985 5677887 65 8899999996
Q ss_pred CCCCccCCCCCCCCCC-------cEEEeecCCCCCccCCcc---cccceEeeeCcCCcc
Q 036657 428 CESLRSFPRGIHFVSP-------ITIDFSFCVNLTEFPQIS---GNIIELKLWYTAIEE 476 (481)
Q Consensus 428 c~~l~~lp~~~~l~~L-------~~L~l~~c~~L~~lp~~~---~~L~~L~L~~~~l~~ 476 (481)
+.++.+|. +.- +| +.|++++| .+..+|..+ .+|+.|+|++|.++.
T Consensus 190 -N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 190 -NLLESLPA-VPV-RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -SCCSSCCC-CC---------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -CCCCchhh-HHH-hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 57888887 422 66 99999986 488888743 466889999998854
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=137.57 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKK 369 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~ 369 (481)
.+|+.|++++|.+ ....+..+..++ +|++|++++|.++.+++. |. +.+|++|+|++|+++.+|.. +..
T Consensus 35 ~~l~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQSTGL--------ATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTSCC--------CCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCEEEccCCCc--------CccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc
Confidence 4677777777763 233344566666 777777777777766654 44 77777777777777766543 567
Q ss_pred CCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCc
Q 036657 370 AFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLRSFPRG-I-HFVSPI 444 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~ 444 (481)
+++|++|++++| .+..+|. ++.+++|++|+++++ .+..+|. .++.+++|++|++++ +.+..+|.. + ++++|+
T Consensus 106 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 106 LTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCC
T ss_pred cCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCC
Confidence 777777777777 3666665 567777777777774 4556655 467777777777775 466666652 3 377777
Q ss_pred EEEeecCC
Q 036657 445 TIDFSFCV 452 (481)
Q Consensus 445 ~L~l~~c~ 452 (481)
.|++++++
T Consensus 183 ~L~l~~N~ 190 (251)
T 3m19_A 183 TITLFGNQ 190 (251)
T ss_dssp EEECCSCC
T ss_pred EEEeeCCc
Confidence 77777754
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=144.49 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=135.1
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD- 344 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~- 344 (481)
...++.+.+.... ...+.+..|.++++|+.|++++|.+ ..+|..+. + +|++|++++|.+..+|..
T Consensus 77 l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~--~-~L~~L~l~~n~i~~~~~~~ 142 (332)
T 2ft3_A 77 LQHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYISKNHL---------VEIPPNLP--S-SLVELRIHDNRIRKVPKGV 142 (332)
T ss_dssp CTTCCEEECCSSC--CCEECGGGSTTCTTCCEEECCSSCC---------CSCCSSCC--T-TCCEEECCSSCCCCCCSGG
T ss_pred CCCCcEEECCCCc--cCccCHhHhhCcCCCCEEECCCCcC---------CccCcccc--c-cCCEEECCCCccCccCHhH
Confidence 3455555554433 2345577888899999999988873 34555443 3 677777777766666654
Q ss_pred CC-CCCceEEEcCCCCccc---ccccccCC--------------------CCCcEEeccCCCCCcccCC--CCCCCCCCE
Q 036657 345 FE-PENLIELNLPYSKVEQ---IWKGEKKA--------------------FKLKYIDISHSQQLVRMLD--LSETPNLER 398 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~~---lp~~~~~L--------------------~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~ 398 (481)
|. +.+|++|++++|.++. .|..+..+ ++|++|++++|. +..++. +..+++|++
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYR 221 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSC
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence 33 6666666666666542 22222222 577777887774 666653 889999999
Q ss_pred EeccCCCCCcccc-ccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc----------ccccce
Q 036657 399 TNLLNCRDLACVR-SSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI----------SGNIIE 466 (481)
Q Consensus 399 L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~----------~~~L~~ 466 (481)
|++++| .+..++ ..++.+++|+.|++++ +.+..+|..+. +++|+.|+++++. +..+|.. ..+++.
T Consensus 222 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 222 LGLGHN-QIRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp CBCCSS-CCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSE
T ss_pred EECCCC-cCCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccc
Confidence 999996 455555 4789999999999997 57889998774 9999999999965 8887751 245689
Q ss_pred EeeeCcCCc
Q 036657 467 LKLWYTAIE 475 (481)
Q Consensus 467 L~L~~~~l~ 475 (481)
|++++|.+.
T Consensus 299 L~l~~N~~~ 307 (332)
T 2ft3_A 299 ISLFNNPVP 307 (332)
T ss_dssp EECCSSSSC
T ss_pred eEeecCccc
Confidence 999999886
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=136.98 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=70.2
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccc-cccccc
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQ-IWKGEK 368 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~-lp~~~~ 368 (481)
..+++|+.|++++|.+ ..+| ++..++ +|++|++++|.+..+|....+++|++|++++|.+.. .|..+.
T Consensus 41 ~~l~~L~~L~l~~n~i---------~~l~-~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINV---------TDLT-GIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCC---------SCCT-TGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCc---------cChH-HHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhc
Confidence 4456666666666652 3444 455555 566666655554444422225555555555555543 344455
Q ss_pred CCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEE
Q 036657 369 KAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITI 446 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L 446 (481)
.+++|++|++++|. +.. .|. ++.+++|++|++++|..+..+| .++.+++|++|++++| .+..++....+++|++|
T Consensus 110 ~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEE
T ss_pred CCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCCCEE
Confidence 55555555555553 322 222 4455555555555543344443 3444555555555432 34443321124444444
Q ss_pred Eeec
Q 036657 447 DFSF 450 (481)
Q Consensus 447 ~l~~ 450 (481)
++++
T Consensus 187 ~l~~ 190 (197)
T 4ezg_A 187 YAFS 190 (197)
T ss_dssp EECB
T ss_pred EeeC
Confidence 4444
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=145.81 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=105.9
Q ss_pred cccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEe
Q 036657 321 LEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTN 400 (481)
Q Consensus 321 l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~ 400 (481)
+..++ +|++|++++|.+..+|....+.+|++|++++|.+..++. +..+++|++|++++|. +..+|.+..+++|++|+
T Consensus 173 ~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~ 249 (347)
T 4fmz_A 173 IANLT-DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLE 249 (347)
T ss_dssp GGGCT-TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEE
T ss_pred hccCC-CCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEE
Confidence 44555 666666666666666552236666677776666665544 6677888888888874 77777677888888888
Q ss_pred ccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccC-C---cccccceEeeeCcCCcc
Q 036657 401 LLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFP-Q---ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp-~---~~~~L~~L~L~~~~l~~ 476 (481)
+++| .+..++ .+..+++|++|++++| .+..+|....+++|+.|++++|. +...+ . ...+|++|++++|.++.
T Consensus 250 l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 250 IGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCcccc
Confidence 8885 455553 5778888888888875 67776553358888888888875 54433 3 24577889999888877
Q ss_pred CCC
Q 036657 477 VPS 479 (481)
Q Consensus 477 lP~ 479 (481)
+|+
T Consensus 326 ~~~ 328 (347)
T 4fmz_A 326 IRP 328 (347)
T ss_dssp CGG
T ss_pred ccC
Confidence 654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=157.22 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=84.9
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+.... ...+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.++.+|.. .
T Consensus 21 ~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~ 88 (520)
T 2z7x_B 21 QKTTILNISQNY--ISELWTSDILSLSKLRILIISHNRI--------QYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-P 88 (520)
T ss_dssp TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECCSSCC--------CEEEGGGGTTCT-TCCEEECCSSCCCEEECC-C
T ss_pred ccccEEECCCCc--ccccChhhccccccccEEecCCCcc--------CCcChHHhhccc-CCCEEecCCCceeecCcc-c
Confidence 456666555443 3345678899999999999999984 445577888898 999999999999999988 8
Q ss_pred CCCceEEEcCCCCccc--ccccccCCCCCcEEeccCCC
Q 036657 347 PENLIELNLPYSKVEQ--IWKGEKKAFKLKYIDISHSQ 382 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~Ls~~~ 382 (481)
+.+|++|++++|.+.. +|..++.+++|++|++++|.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcc
Confidence 8999999999999986 56789999999999998874
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-15 Score=151.77 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=87.3
Q ss_pred cccccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccC-CCCC-
Q 036657 364 WKGEKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSF-PRGI- 438 (481)
Q Consensus 364 p~~~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~l-p~~~- 438 (481)
|..+..+++|++|++++|. +..++ . ++.+++|++|++++|. +..+ |..++.+++|++|++++| .+..+ |..+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 368 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFL 368 (455)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred hhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC-cccccChhhcc
Confidence 4457788999999999995 66664 3 8899999999999965 4544 667899999999999975 66666 5555
Q ss_pred CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCC
Q 036657 439 HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 439 ~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP 478 (481)
++++|++|++++|. +..+|.. +.+|++|++++|.++...
T Consensus 369 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 369 GLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCC
Confidence 49999999999964 8888862 457799999999986543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.7e-15 Score=150.83 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=118.5
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~ 365 (481)
..+.++++|+.|++++|.+ ..+| ++..++ +|++|++++|.++.+| +. +.+|++|++++|.++.++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l---------~~~~-~l~~l~-~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSI---------TDMT-GIEKLT-GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp EEHHHHTTCCEEECCSSCC---------CCCT-TGGGCT-TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred cChhHcCCCCEEEccCCCc---------ccCh-hhcccC-CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-
Confidence 4567889999999999884 3455 688888 9999999999999987 55 999999999999999886
Q ss_pred cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcE
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPIT 445 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~ 445 (481)
++.+++|++|++++| .+..+| ++.+++|++|++++| .+..++ ++.+++|+.|++++|..+..++ ...+++|+.
T Consensus 102 -~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~ 174 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTT 174 (457)
T ss_dssp -CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCE
T ss_pred -cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCcccccc-cccCCcCCE
Confidence 889999999999999 488886 999999999999995 466664 7777778888777765555552 123566666
Q ss_pred EEeecCCCCCccC
Q 036657 446 IDFSFCVNLTEFP 458 (481)
Q Consensus 446 L~l~~c~~L~~lp 458 (481)
|++++|. +..+|
T Consensus 175 L~ls~n~-l~~l~ 186 (457)
T 3bz5_A 175 LDCSFNK-ITELD 186 (457)
T ss_dssp EECCSSC-CCCCC
T ss_pred EECCCCc-cceec
Confidence 6666543 44444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=148.45 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=59.7
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRD 406 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~ 406 (481)
+|++|++++|.++.+|....+.+|++|++++|.+..+|... .+|++|++++| .+..+|.++.+++|++|++++| .
T Consensus 174 ~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N-~ 248 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPELQNLPFLTTIYADNN-L 248 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-C
T ss_pred cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccccCCCCCCCEEECCCC-c
Confidence 55555555555555553122555555555555555544322 35555555555 2445555555556666666553 3
Q ss_pred CccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC
Q 036657 407 LACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ 459 (481)
Q Consensus 407 l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~ 459 (481)
+..+|.. +++|+.|++++| .+..+|.. +++|+.|++++|. +..+|.
T Consensus 249 l~~l~~~---~~~L~~L~l~~N-~l~~l~~~--~~~L~~L~ls~N~-l~~l~~ 294 (454)
T 1jl5_A 249 LKTLPDL---PPSLEALNVRDN-YLTDLPEL--PQSLTFLDVSENI-FSGLSE 294 (454)
T ss_dssp CSSCCSC---CTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSEESC
T ss_pred CCccccc---ccccCEEECCCC-cccccCcc--cCcCCEEECcCCc-cCcccC
Confidence 4444432 245555555542 34444432 2445555555432 444333
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=160.69 Aligned_cols=177 Identities=13% Similarity=0.097 Sum_probs=125.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
..++.+.+..... ..+.+..|.++++|++|++++|.+ ....|+.+..++ +|++|++++|.+..+|+. |
T Consensus 26 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 26 AAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRI--------NTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp TTCCEEECCSSCC--CEECSSTTSSCTTCCEEECTTSCC--------CEECTTTTTTCT-TCCEEECTTSCCCSCCHHHH
T ss_pred CCccEEECcCCcc--CccChhhhhcCCcccEEECCCCCc--------CccChhhccccc-cCCEEECCCCccCccCHHHh
Confidence 3455555544432 234456788888888888888874 344456777887 888888888888887765 5
Q ss_pred C-CCCceEEEcCCCCccc--ccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQ--IWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSIENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L 420 (481)
. +.+|++|++++|.+.. .|..+..+++|++|++++|..+..+|. ++++++|++|++++|......|..++.+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 5 8888888888888874 356788888888888888865777763 7888888888888866555567777777777
Q ss_pred CEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCc
Q 036657 421 SMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTE 456 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~ 456 (481)
++|+++++ ....+|... .+++|+.|++++|. +..
T Consensus 175 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~-l~~ 210 (549)
T 2z81_A 175 HHLTLHLS-ESAFLLEIFADILSSVRYLELRDTN-LAR 210 (549)
T ss_dssp EEEEEECS-BSTTHHHHHHHSTTTBSEEEEESCB-CTT
T ss_pred ceEecccC-cccccchhhHhhcccccEEEccCCc-ccc
Confidence 77777753 444444433 36777777777754 444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=155.47 Aligned_cols=182 Identities=19% Similarity=0.231 Sum_probs=103.0
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKV 360 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i 360 (481)
+.+.+|..+++|+.|++++|.+ ...+| ..+..++ +|++|++++|.+..++.. |. +.+|++|++++|.+
T Consensus 396 ~~~~~~~~l~~L~~L~L~~N~l--------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 396 IESDAFSWLGHLEVLDLGLNEI--------GQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC--------EEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred EChhhhhCCCCCCEEeCCCCcC--------ccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 4456777788888888887764 33344 3555666 677777777666554433 33 55666666666554
Q ss_pred c---cccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc---------cccCCCCCCEEeee
Q 036657 361 E---QIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS---------SIENFNNLSMLCFK 426 (481)
Q Consensus 361 ~---~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~---------~i~~L~~L~~L~l~ 426 (481)
. .+|..+..+++|++|++++|. +..+|. ++++++|++|++++| .+..++. .++.+++|+.|+++
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred cccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECC
Confidence 3 345556666666666666663 555554 556666666666653 2333321 14555666666666
Q ss_pred CCCCCccCCCC-C-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCC
Q 036657 427 GCESLRSFPRG-I-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 427 ~c~~l~~lp~~-~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP 478 (481)
+ +.+..+|.. + ++++|+.|+++++ ++..+|.. ..+|+.|+|++|.|+.+|
T Consensus 545 ~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 545 S-NGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp S-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred C-CCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 4 355555543 2 3666666666553 35555542 234556666666665554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-14 Score=146.05 Aligned_cols=163 Identities=18% Similarity=0.128 Sum_probs=118.3
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
++|++|++++|.+ ..+| .+..++ +|++|++++|.++.+|..+ .+|++|++++|.++.+| .++.+++
T Consensus 131 ~~L~~L~L~~n~l---------~~lp-~~~~l~-~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~ 196 (454)
T 1jl5_A 131 PLLEYLGVSNNQL---------EKLP-ELQNSS-FLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPF 196 (454)
T ss_dssp TTCCEEECCSSCC---------SSCC-CCTTCT-TCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred CCCCEEECcCCCC---------CCCc-ccCCCC-CCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCC
Confidence 5677777777663 3356 477777 7778888777777777543 47778888877777776 5777888
Q ss_pred CcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCC
Q 036657 373 LKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCV 452 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~ 452 (481)
|++|++++|. +..+|.+. ++|++|++++| .+..+| .++.+++|++|++++ +.+..+|.. +++|+.|++++|.
T Consensus 197 L~~L~l~~N~-l~~l~~~~--~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~-N~l~~l~~~--~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 197 LTAIYADNNS-LKKLPDLP--LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADN-NLLKTLPDL--PPSLEALNVRDNY 268 (454)
T ss_dssp CCEEECCSSC-CSSCCCCC--TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS-SCCSSCCSC--CTTCCEEECCSSC
T ss_pred CCEEECCCCc-CCcCCCCc--CcccEEECcCC-cCCccc-ccCCCCCCCEEECCC-CcCCccccc--ccccCEEECCCCc
Confidence 8888888774 66666532 47788888875 455777 478888888888886 466667652 4788888888864
Q ss_pred CCCccCCcccccceEeeeCcCCccCC
Q 036657 453 NLTEFPQISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 453 ~L~~lp~~~~~L~~L~L~~~~l~~lP 478 (481)
+..+|..+.+|++|++++|.++.+|
T Consensus 269 -l~~l~~~~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 269 -LTDLPELPQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp -CSCCCCCCTTCCEEECCSSCCSEES
T ss_pred -ccccCcccCcCCEEECcCCccCccc
Confidence 7778887788888888888887654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=145.26 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=141.5
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCcc--ccccccccceeeccccCCCCCC-----CC-CCCCceEEEcCCCCcc
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGL--EYLPEELRYLHWHEYSLKMLPF-----DF-EPENLIELNLPYSKVE 361 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l--~~l~~~Lr~L~l~~~~l~~lP~-----~~-~l~~L~~L~L~~~~i~ 361 (481)
..+++|+.|++++|.+ ....|..+ ..++ +|++|++++|.+..... .+ .+.+|++|++++|++.
T Consensus 88 ~~~~~L~~L~l~~n~l--------~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 158 (310)
T 4glp_A 88 LAYSRLKELTLEDLKI--------TGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP 158 (310)
T ss_dssp HHHSCCCEEEEESCCC--------BSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC
T ss_pred cccCceeEEEeeCCEe--------ccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc
Confidence 3457799999999985 45667776 7788 99999999999886322 12 3889999999999999
Q ss_pred ccc-ccccCCCCCcEEeccCCCCCcc--cCC---CCCCCCCCEEeccCCCCCcccccc----ccCCCCCCEEeeeCCCCC
Q 036657 362 QIW-KGEKKAFKLKYIDISHSQQLVR--MLD---LSETPNLERTNLLNCRDLACVRSS----IENFNNLSMLCFKGCESL 431 (481)
Q Consensus 362 ~lp-~~~~~L~~L~~L~Ls~~~~l~~--lp~---~~~l~~L~~L~L~~c~~l~~lp~~----i~~L~~L~~L~l~~c~~l 431 (481)
.++ ..+..+++|++|++++|..... ++. ++.+++|++|++++| .+..+|.. ++.+++|++|++++ +.+
T Consensus 159 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l 236 (310)
T 4glp_A 159 AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSH-NSL 236 (310)
T ss_dssp CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTT-SCC
T ss_pred hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCC-CCC
Confidence 776 5688999999999999963321 332 578999999999996 46655542 57889999999997 567
Q ss_pred ccC-CCCCC-C---CCCcEEEeecCCCCCccCCc-ccccceEeeeCcCCccCCC
Q 036657 432 RSF-PRGIH-F---VSPITIDFSFCVNLTEFPQI-SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 432 ~~l-p~~~~-l---~~L~~L~l~~c~~L~~lp~~-~~~L~~L~L~~~~l~~lP~ 479 (481)
..+ |..+. + ++|++|++++|. +..+|.. ..+|+.|+|++|.|+.+|.
T Consensus 237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 237 RATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCC
T ss_pred CccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCch
Confidence 766 65553 3 799999999965 8899984 5689999999999998764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=155.75 Aligned_cols=174 Identities=13% Similarity=0.137 Sum_probs=147.2
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc-ccC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG-EKK 369 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~-~~~ 369 (481)
++|++|++++|.+ ....|..+..++ +|++|++++|.+..+|+ .|. +.+|++|++++|.+..++.. +..
T Consensus 26 ~~L~~L~Ls~n~l--------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKI--------TYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCC--------CEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCccEEECcCCcc--------CccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 6899999999985 444567899999 99999999999998875 465 99999999999999988776 999
Q ss_pred CCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCc
Q 036657 370 AFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVR-SSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPI 444 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~ 444 (481)
+++|++|++++|. +.. .|. ++++++|++|++++|..+..+| ..++++++|++|+++++.--...|..+. +++|+
T Consensus 97 l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 9999999999995 664 344 8999999999999987678887 4799999999999998654444676664 99999
Q ss_pred EEEeecCCCCCccCCc----ccccceEeeeCcCCccC
Q 036657 445 TIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEV 477 (481)
Q Consensus 445 ~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~l 477 (481)
+|+++++. +..+|.. +.+|++|++++|.++.+
T Consensus 176 ~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 176 HLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred eEecccCc-ccccchhhHhhcccccEEEccCCccccc
Confidence 99999865 6677653 56889999999999875
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=152.67 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=65.4
Q ss_pred cCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCCc--cccccccCCCCCCEEeeeCCCCCcc-CCCC-C-CC
Q 036657 368 KKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDLA--CVRSSIENFNNLSMLCFKGCESLRS-FPRG-I-HF 440 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~-lp~~-~-~l 440 (481)
..+++|++|++++|. +.. +|. ++.+++|++|++++|.... .+|..++.+++|++|++++| .+.. +|.. + .+
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccC
Confidence 456677777777774 443 454 7788888888888754322 45566788888888888864 4554 6643 2 35
Q ss_pred CCCcEEEeecCCCCCccCCcc-cccceEeeeCcCCccCCC
Q 036657 441 VSPITIDFSFCVNLTEFPQIS-GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 441 ~~L~~L~l~~c~~L~~lp~~~-~~L~~L~L~~~~l~~lP~ 479 (481)
++|++|++++|.-...+|..+ .+|+.|++++|+|+.+|.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~ 438 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK 438 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCG
T ss_pred ccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccch
Confidence 566666666554223333322 344555555555544443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=154.23 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=86.2
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..+. ...+.+..|.++++|++|++++|.+ ....|+.+..++ +|++|++++|.++.+|.. .
T Consensus 52 ~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~ 119 (562)
T 3a79_B 52 PRTKALSLSQNS--ISELRMPDISFLSELRVLRLSHNRI--------RSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-P 119 (562)
T ss_dssp TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECCSCCC--------CEECTTTTTTCT-TCCEEECTTSCCCEECSC-C
T ss_pred CCcCEEECCCCC--ccccChhhhccCCCccEEECCCCCC--------CcCCHHHhCCCC-CCCEEECCCCcCCccCcc-c
Confidence 456666555443 3456678899999999999999984 444577889998 999999999999999988 8
Q ss_pred CCCceEEEcCCCCccccc--ccccCCCCCcEEeccCCC
Q 036657 347 PENLIELNLPYSKVEQIW--KGEKKAFKLKYIDISHSQ 382 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp--~~~~~L~~L~~L~Ls~~~ 382 (481)
+.+|++|++++|.+..+| ..+.++++|++|++++|.
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 999999999999999765 679999999999999884
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-15 Score=156.55 Aligned_cols=172 Identities=11% Similarity=0.016 Sum_probs=140.9
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCC
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAF 371 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~ 371 (481)
+++|+.|++++|.+ ....|..+..++ +|++|++++|.+..+++...+.+|++|+|++|.++.+|.. +
T Consensus 33 ~~~L~~L~Ls~n~l--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPL--------SQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----P 99 (487)
T ss_dssp GGGCCEEECCSSCC--------CCCCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----T
T ss_pred CCCccEEEeeCCcC--------CCCCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----C
Confidence 34899999999984 334456888999 9999999999998777633399999999999999988753 8
Q ss_pred CCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCcc-CCCCC--CCCCCcEEEe
Q 036657 372 KLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRS-FPRGI--HFVSPITIDF 448 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~-lp~~~--~l~~L~~L~l 448 (481)
+|++|++++|. +..+|. ..+++|++|++++|......|..++++++|++|+++++ .+.. .|..+ .+++|++|++
T Consensus 100 ~L~~L~L~~N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEec
Confidence 99999999995 776664 45789999999996544445668999999999999975 6665 44444 4899999999
Q ss_pred ecCCCCCccCCc--ccccceEeeeCcCCccCCCC
Q 036657 449 SFCVNLTEFPQI--SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 449 ~~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP~s 480 (481)
++|. +..+|.. +.+|+.|+|++|.|+.+|++
T Consensus 177 s~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 209 (487)
T 3oja_A 177 QYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209 (487)
T ss_dssp TTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG
T ss_pred CCCc-cccccccccCCCCCEEECCCCCCCCCCHh
Confidence 9976 8888764 67899999999999998874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-15 Score=134.67 Aligned_cols=151 Identities=9% Similarity=0.067 Sum_probs=123.3
Q ss_pred ccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEE
Q 036657 322 EYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVR-MLD-LSETPNLERT 399 (481)
Q Consensus 322 ~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L 399 (481)
..++ +|++|+++++.++.+|....+.+|++|++++|.+..++ .+..+++|++|++++|. +.. .|. ++.+++|++|
T Consensus 41 ~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMN-SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHH-TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEE
T ss_pred hhcC-CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEE
Confidence 5566 89999999999999994333999999999999887765 68889999999999995 664 444 9999999999
Q ss_pred eccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCcc
Q 036657 400 NLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 400 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~ 476 (481)
++++|......|..++.+++|++|++++|..+..+|...++++|+.|++++|. +..+|. .+++|++|++++|.|+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC----
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcccCC
Confidence 99997655557888999999999999987668888854459999999999975 777764 35678999999999864
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=151.42 Aligned_cols=180 Identities=19% Similarity=0.172 Sum_probs=112.3
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+..+.... +.. .+++|++|++++|.+ ..+|. .++ +|++|++++|.++.+|. .
T Consensus 61 ~~L~~L~L~~N~l~~--lp~----~l~~L~~L~Ls~N~l---------~~lp~---~l~-~L~~L~Ls~N~l~~l~~--~ 119 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--LPA----LPPELRTLEVSGNQL---------TSLPV---LPP-GLLELSIFSNPLTHLPA--L 119 (622)
T ss_dssp TTCSEEEECSCCCSC--CCC----CCTTCCEEEECSCCC---------SCCCC---CCT-TCCEEEECSCCCCCCCC--C
T ss_pred CCCcEEEecCCCCCC--CCC----cCCCCCEEEcCCCcC---------CcCCC---CCC-CCCEEECcCCcCCCCCC--C
Confidence 455555555443322 222 467788888887773 34554 344 78888888888887777 4
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCC---C--------------CCCCEEeccCCCCCc
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSE---T--------------PNLERTNLLNCRDLA 408 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~---l--------------~~L~~L~L~~c~~l~ 408 (481)
+.+|++|++++|+++.+|.. +++|++|++++| .+..+|. +.+ + ++|+.|++++| .+.
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~ 194 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLA 194 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCS
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCC
Confidence 67788888888888777764 477888888877 4666664 211 1 44444444442 233
Q ss_pred cccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCC
Q 036657 409 CVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 409 ~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~ 479 (481)
.+|.. +++|+.|++++ +.+..+|. .+++|+.|++++| .+..+|..+.+|++|+|++|.|+.+|.
T Consensus 195 ~l~~~---~~~L~~L~L~~-N~l~~l~~--~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~ 258 (622)
T 3g06_A 195 SLPTL---PSELYKLWAYN-NRLTSLPA--LPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM 258 (622)
T ss_dssp CCCCC---CTTCCEEECCS-SCCSSCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred CCCCc---cchhhEEECcC-CcccccCC--CCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCc
Confidence 33322 24455555554 24444443 2467888888875 477788777788888888888887775
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=153.98 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=98.4
Q ss_pred ccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC---------------
Q 036657 283 HLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE--------------- 346 (481)
Q Consensus 283 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~--------------- 346 (481)
.+.+..|.++++|+.|++++|. ...+|..+..++ +|++|++++|.+..+++ .+.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~---------l~~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATH---------LSELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSC---------CSCCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred ccCHHHhccccCCCEEeccCCc---------cCCCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 3455567777777777777766 335566666666 66666666665554422 222
Q ss_pred -----------CCCceEEEcCCCCcccc---cccccCCCCCcEEeccCCCCCccc-CC-CCCCCCCCEEeccCCCCCccc
Q 036657 347 -----------PENLIELNLPYSKVEQI---WKGEKKAFKLKYIDISHSQQLVRM-LD-LSETPNLERTNLLNCRDLACV 410 (481)
Q Consensus 347 -----------l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~~~~l~~l-p~-~~~l~~L~~L~L~~c~~l~~l 410 (481)
+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+ |. ++.+++|++|++++|......
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 44455555555544433 3344555555555555553 3333 22 555555555555554322222
Q ss_pred ccc-ccCCCCCCEEeeeCCCCCccC-CCCC-CCCCCcEEEeecCCCCCc--cCC-----cccccceEeeeCcCCccCC
Q 036657 411 RSS-IENFNNLSMLCFKGCESLRSF-PRGI-HFVSPITIDFSFCVNLTE--FPQ-----ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 411 p~~-i~~L~~L~~L~l~~c~~l~~l-p~~~-~l~~L~~L~l~~c~~L~~--lp~-----~~~~L~~L~L~~~~l~~lP 478 (481)
|.. ++.+++|+.|++++| .+... |..+ ++++|++|++++|. +.. +|. .+.+|++|++++|.++.++
T Consensus 417 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp TCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred cchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCccCccC
Confidence 222 556666666666654 33333 3333 36777777777754 332 221 2346677777777776664
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=148.70 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=103.2
Q ss_pred ccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEE
Q 036657 320 GLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERT 399 (481)
Q Consensus 320 ~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L 399 (481)
.+..++ +|++|++++|.+..+++...+.+|++|++++|.+..++. +..+++|+.|++++|. +..+|.++.+++|+.|
T Consensus 238 ~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 314 (466)
T 1o6v_A 238 TLASLT-NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYL 314 (466)
T ss_dssp GGGGCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEE
T ss_pred hhhcCC-CCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEE
Confidence 345555 677777777766666653336677777777777776655 6677777777777773 6666667777777777
Q ss_pred eccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccC
Q 036657 400 NLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 400 ~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~l 477 (481)
++++|. +..++. ++.+++|+.|++++| .+..++...++++|+.|++++|. +..++. .+.+|+.|++++|.++.+
T Consensus 315 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 315 TLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEEEECC
T ss_pred ECcCCc-CCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCcccCC
Confidence 777753 444443 677778888888764 56666544458888888888865 444443 245668888888888776
Q ss_pred CCC
Q 036657 478 PSS 480 (481)
Q Consensus 478 P~s 480 (481)
|..
T Consensus 391 p~~ 393 (466)
T 1o6v_A 391 PVN 393 (466)
T ss_dssp CBC
T ss_pred chh
Confidence 643
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-15 Score=155.02 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=103.8
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~ 346 (481)
.++.+.+..+. ...+.+..|.++++|++|++++|.+ ....+..+..++ +|++|++++|.++.+|+ .|.
T Consensus 29 ~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i--------~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 29 STKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEI--------QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCCEEECCSCC--CCEECTTTTTTCSSCCEEECTTCCC--------CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTT
T ss_pred cccEEEccCCc--cCccChhHhhCCCCceEEECCCCcC--------CccCcccccCch-hCCEEeCcCCcCCccCHhhhc
Confidence 45555444333 3345566788888899998888873 333455677788 88888888888888774 455
Q ss_pred -CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcc--cCC-CCCCCCCCEEeccCCCCCccccccccCCCCC-
Q 036657 347 -PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVR--MLD-LSETPNLERTNLLNCRDLACVRSSIENFNNL- 420 (481)
Q Consensus 347 -l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L- 420 (481)
+.+|++|++++|+++.++. .++.+++|++|++++|. +.. +|. ++++++|++|++++|......|..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 8888888888888888776 58888888888888884 554 566 8888888888888854322233445555555
Q ss_pred ---CEEeeeC
Q 036657 421 ---SMLCFKG 427 (481)
Q Consensus 421 ---~~L~l~~ 427 (481)
+.|++++
T Consensus 177 ~~~~~L~l~~ 186 (570)
T 2z63_A 177 LLNLSLDLSL 186 (570)
T ss_dssp TCCCEEECTT
T ss_pred hhhhhcccCC
Confidence 5555554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-15 Score=142.05 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=139.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+....... + ..+..+++|+.|++++|.+ ..++. +..++ +|++|++++|.++.+|....
T Consensus 46 ~~L~~L~l~~~~i~~--~--~~~~~l~~L~~L~L~~n~l---------~~~~~-l~~l~-~L~~L~l~~n~l~~~~~l~~ 110 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS--V--QGIQYLPNVTKLFLNGNKL---------TDIKP-LANLK-NLGWLFLDENKVKDLSSLKD 110 (291)
T ss_dssp HTCCEEECTTSCCCC--C--TTGGGCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCGGGGTT
T ss_pred CcccEEEccCCCccc--C--hhHhcCCCCCEEEccCCcc---------CCCcc-cccCC-CCCEEECCCCcCCCChhhcc
Confidence 345555555443322 2 3488899999999999984 34454 88888 99999999999999887445
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
+.+|++|++++|++..++ .+..+++|++|++++|. +..++.++.+++|++|++++| .+..++. +..+++|++|+++
T Consensus 111 l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECC
Confidence 999999999999999874 68899999999999994 888877999999999999996 5677765 9999999999999
Q ss_pred CCCCCccCCCCCCCCCCcEEEeecCCCCCccC
Q 036657 427 GCESLRSFPRGIHFVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 427 ~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp 458 (481)
+ +.+..+|....+++|+.|++++|+ +...|
T Consensus 187 ~-N~i~~l~~l~~l~~L~~L~l~~n~-i~~~~ 216 (291)
T 1h6t_A 187 K-NHISDLRALAGLKNLDVLELFSQE-CLNKP 216 (291)
T ss_dssp S-SCCCBCGGGTTCTTCSEEEEEEEE-EECCC
T ss_pred C-CcCCCChhhccCCCCCEEECcCCc-ccCCc
Confidence 7 578888874469999999999865 44444
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=150.70 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=60.9
Q ss_pred cCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCCcc---ccccccCCCCCCEEeeeCCCCCcc-CCCCC--C
Q 036657 368 KKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDLAC---VRSSIENFNNLSMLCFKGCESLRS-FPRGI--H 439 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l~~---lp~~i~~L~~L~~L~l~~c~~l~~-lp~~~--~ 439 (481)
..+++|++|++++|. +.. +|. ++.+++|++|++++| .+.. +|..++.+++|++|+++++ .+.. +|... .
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence 456677777777774 443 444 777777777777774 3443 3445777778888888764 4544 66432 2
Q ss_pred CCCCcEEEeecCCCCCccCCcc-cccceEeeeCcCCccCCC
Q 036657 440 FVSPITIDFSFCVNLTEFPQIS-GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 440 l~~L~~L~l~~c~~L~~lp~~~-~~L~~L~L~~~~l~~lP~ 479 (481)
+++|+.|++++|.--..+|..+ .+|+.|+|++|+|+.+|.
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~ 467 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPK 467 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCT
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccCh
Confidence 5555555555543222333322 244444444444444443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-14 Score=134.12 Aligned_cols=166 Identities=18% Similarity=0.258 Sum_probs=102.9
Q ss_pred CcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccCCC
Q 036657 295 LRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKKAF 371 (481)
Q Consensus 295 Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~L~ 371 (481)
.+.+++.++. ...+|..+. .+++.|+++++.+..++.. |. +.+|++|+|++|.+..++.. +..++
T Consensus 16 ~~~l~~~~~~---------l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 83 (251)
T 3m19_A 16 KKEVDCQGKS---------LDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83 (251)
T ss_dssp GTEEECTTCC---------CSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CeEEecCCCC---------ccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC
Confidence 4555555554 334554332 3677777777777666553 44 67777777777777665443 56677
Q ss_pred CCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEE
Q 036657 372 KLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITI 446 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L 446 (481)
+|++|++++|. +..+|. ++.+++|++|+++++ .+..+|.. ++.+++|++|++++ +.++.+|.. + ++++|++|
T Consensus 84 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 84 ELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEE
Confidence 77777777763 666654 567777777777763 45555544 46677777777775 466666653 3 36777777
Q ss_pred EeecCCCCCccCC----cccccceEeeeCcCCcc
Q 036657 447 DFSFCVNLTEFPQ----ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 447 ~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~ 476 (481)
+++++. +..+|. .+.+|+.|+|++|.+..
T Consensus 161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 777743 666554 13456677777766644
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=143.85 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=126.1
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~ 366 (481)
.+..+++|+.|++++|. ...++ .+..++ +|++|++++|.++.+|. +. +.+|++|++++|+++.+|..
T Consensus 36 ~~~~l~~L~~L~l~~n~---------i~~l~-~l~~l~-~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN---------IQSLA-GMQFFT-NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp CHHHHTTCSEEECTTSC---------CCCCT-TGGGCT-TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC
T ss_pred chhhcCcCcEEECcCCC---------cccch-HHhhCC-CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc
Confidence 57889999999999887 34556 678888 99999999999999888 55 89999999999999988764
Q ss_pred ccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEE
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITI 446 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L 446 (481)
.. ++|++|++++| .+..+|.++.+++|++|++++| .+..+| .++.+++|+.|++++ +.+..++....+++|+.|
T Consensus 104 ~~--~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~l~~l~~L~~L 177 (263)
T 1xeu_A 104 PS--ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWI 177 (263)
T ss_dssp CC--SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTT-SCCCBCTTSTTCCCCCEE
T ss_pred cc--CcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCC-CcCcchHHhccCCCCCEE
Confidence 44 89999999999 4888888999999999999985 577776 788999999999997 577777443459999999
Q ss_pred EeecCCCCCccC
Q 036657 447 DFSFCVNLTEFP 458 (481)
Q Consensus 447 ~l~~c~~L~~lp 458 (481)
+++++. +...|
T Consensus 178 ~l~~N~-~~~~~ 188 (263)
T 1xeu_A 178 DLTGQK-CVNEP 188 (263)
T ss_dssp EEEEEE-EECCC
T ss_pred eCCCCc-ccCCc
Confidence 999865 55444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=147.37 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=139.5
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDF 345 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~ 345 (481)
...++.+.+........ ..+.++++|+.|++++|.+ ..++. +..++ +|+.|++++|.++.++...
T Consensus 176 l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l---------~~~~~-~~~l~-~L~~L~l~~n~l~~~~~l~ 240 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQI---------SDITP-LGILT-NLDELSLNGNQLKDIGTLA 240 (466)
T ss_dssp CTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCC---------CCCGG-GGGCT-TCCEEECCSSCCCCCGGGG
T ss_pred CCCCCEEECcCCcCCCC----hhhccCCCCCEEEecCCcc---------ccccc-ccccC-CCCEEECCCCCcccchhhh
Confidence 34555555554433221 3478888888888888773 22222 56666 8888888888888876444
Q ss_pred CCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEee
Q 036657 346 EPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCF 425 (481)
Q Consensus 346 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l 425 (481)
.+.+|++|++++|.+..++. +..+++|++|++++|. +..+|.+..+++|++|++++| .+..++. ++.+++|+.|++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTL 316 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEEC
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEEC
Confidence 48888888888888887765 7788888888888884 777777888888888888885 4555654 788888888888
Q ss_pred eCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCC
Q 036657 426 KGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 426 ~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP 478 (481)
++| .+..++....+++|+.|++++|. +..+|. .+.+|+.|++++|.++.++
T Consensus 317 ~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 317 YFN-NISDISPVSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred cCC-cCCCchhhccCccCCEeECCCCc-cCCchhhccCCCCCEEeCCCCccCccc
Confidence 875 56666553358888888888874 776664 2457788888888887655
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=143.95 Aligned_cols=199 Identities=14% Similarity=0.170 Sum_probs=116.5
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-C
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
.++.+.+..+.. ..+.+.+|.++++|+.|++++|.+ ...+|. .|..++.-++.+.+.++.+..+|+. |
T Consensus 31 ~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i--------~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 31 NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDV--------LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp TCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTT--------CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred CCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCC--------CCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 455555554433 346677899999999999998874 233443 4555662333455556666666544 4
Q ss_pred C-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCC-CCCEEeccCCCCCccccccccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETP-NLERTNLLNCRDLACVRSSIENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~-~L~~L~L~~c~~l~~lp~~i~~L~~L 420 (481)
. +.+|++|++++|++..+|.. +....++..|++.++..+..+|. +..+. .|+.|++++ +.+..+|..+....+|
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccch
Confidence 4 67777777777776666543 33445556666655545555554 44433 455666665 3455566555555566
Q ss_pred CEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCC-cccccceEeee-CcCCccCC
Q 036657 421 SMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQ-ISGNIIELKLW-YTAIEEVP 478 (481)
Q Consensus 421 ~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~L~-~~~l~~lP 478 (481)
+.|++.+++.++.+|... ++++|+.|+++++ +++.+|. .+.+|+.|.+. .++++.+|
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCC
Confidence 666666556666666533 3666666666664 3666654 35555555544 34455555
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-15 Score=146.98 Aligned_cols=177 Identities=10% Similarity=0.036 Sum_probs=143.7
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~ 365 (481)
...+..+++|+.|++++|.+ ....|..+..++ +|++|++++|.+..+++...+.+|++|++++|.++.++.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l--------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 97 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPL--------SQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV 97 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCC--------CCCCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE
T ss_pred HHHhccCCCCCEEECcCCcc--------CcCCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC
Confidence 45667788999999999984 333446788888 999999999999877763349999999999999998774
Q ss_pred cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCC-CCC--CCC
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFP-RGI--HFV 441 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp-~~~--~l~ 441 (481)
.++|++|++++|. +..++. ..+++|++|++++|. +..+ |..++.+++|++|+++++ .+..++ ..+ .++
T Consensus 98 ----~~~L~~L~l~~n~-l~~~~~-~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 98 ----GPSIETLHAANNN-ISRVSC-SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSD 169 (317)
T ss_dssp ----CTTCCEEECCSSC-CSEEEE-CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTT
T ss_pred ----CCCcCEEECCCCc-cCCcCc-cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccC
Confidence 4899999999995 777764 347899999999964 5555 457889999999999974 666654 333 389
Q ss_pred CCcEEEeecCCCCCccCCc--ccccceEeeeCcCCccCCCC
Q 036657 442 SPITIDFSFCVNLTEFPQI--SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 442 ~L~~L~l~~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP~s 480 (481)
+|++|++++|. +..+|.. ..+|++|+|++|.++.+|+.
T Consensus 170 ~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp TCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG
T ss_pred cCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhh
Confidence 99999999975 8888764 67899999999999998864
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-14 Score=153.29 Aligned_cols=149 Identities=21% Similarity=0.210 Sum_probs=103.3
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F 345 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~ 345 (481)
..++.+.+..... ..+.+..|.++++|++|++++|.+ ....|..+..++ +|++|++++|.++.+|.. |
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l--------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTI--------SKLEPELCQKLP-MLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCC--------CCCCTTHHHHCT-TCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCcc--------CccCHHHHhccc-CcCEEECCCCccCccChhhh
Confidence 3556555554332 335566788888888888888774 334466677777 888888888888888874 5
Q ss_pred C-CCCceEEEcCCCCccccc-ccccCCCCCcEEeccCCCCCcccC-C-CCCCCCCCEEeccCCCCCccccc-cc--cCCC
Q 036657 346 E-PENLIELNLPYSKVEQIW-KGEKKAFKLKYIDISHSQQLVRML-D-LSETPNLERTNLLNCRDLACVRS-SI--ENFN 418 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~lp-~-~~~l~~L~~L~L~~c~~l~~lp~-~i--~~L~ 418 (481)
. +.+|++|++++|++..++ ..+..+++|++|++++|. +..++ . ++++++|++|++++|. +..++. .+ ..++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANS 171 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTC
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccc
Confidence 5 888888888888888776 457888888888888885 44443 3 7788888888888753 444433 22 2446
Q ss_pred CCCEEeeeCC
Q 036657 419 NLSMLCFKGC 428 (481)
Q Consensus 419 ~L~~L~l~~c 428 (481)
+|++|+++++
T Consensus 172 ~L~~L~L~~n 181 (680)
T 1ziw_A 172 SLKKLELSSN 181 (680)
T ss_dssp EESEEECTTC
T ss_pred cccEEECCCC
Confidence 6777777654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=158.50 Aligned_cols=149 Identities=20% Similarity=0.348 Sum_probs=103.1
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceec-CCccccccccccceeeccccCCCC-CCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHL-DQGLEYLPEELRYLHWHEYSLKML-PFD 344 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-P~~ 344 (481)
..++.+.+..+.. ..+.+..|.++++|++|++++|.. ...+ |..+..++ +|++|++++|.+..+ |..
T Consensus 24 ~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~--------~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 24 NTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYT--------PLTIDKEAFRNLP-NLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp TTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCC--------CCEECTTTTSSCT-TCCEEECTTCCCCEECTTS
T ss_pred CCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCC--------ccccCHHHhcCCC-CCCEEECCCCcCcccCHhH
Confidence 4566665554433 345567788888899999888753 3445 66788888 888888888888876 556
Q ss_pred CC-CCCceEEEcCCCCccc-cccc--ccCCCCCcEEeccCCCCCccc-C-C-CCCCCCCCEEeccCCCCCccccccccCC
Q 036657 345 FE-PENLIELNLPYSKVEQ-IWKG--EKKAFKLKYIDISHSQQLVRM-L-D-LSETPNLERTNLLNCRDLACVRSSIENF 417 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~~-lp~~--~~~L~~L~~L~Ls~~~~l~~l-p-~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L 417 (481)
|. +.+|++|+|++|.+.. +|.. +..+++|++|++++|. +..+ | . ++++++|++|+++++..-...|..++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 66 8888888888888875 4554 7888888888888885 5544 2 2 7888888888888864333334444443
Q ss_pred --CCCCEEeeeC
Q 036657 418 --NNLSMLCFKG 427 (481)
Q Consensus 418 --~~L~~L~l~~ 427 (481)
++|+.|++++
T Consensus 172 ~~~~L~~L~L~~ 183 (844)
T 3j0a_A 172 QGKTLSFFSLAA 183 (844)
T ss_dssp HHCSSCCCEECC
T ss_pred cCCccceEECCC
Confidence 4444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=128.94 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EK 368 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~ 368 (481)
++|+.|++++|.+ ..++. .+..++ +|++|++++|.++.+|.. |. +.+|++|++++|+++.+|.. +.
T Consensus 28 ~~l~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 28 AQTTYLDLETNSL---------KSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp TTCSEEECCSSCC---------CCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEEcCCCcc---------CcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 4566666666653 22332 345555 666666666666666554 23 66666666666666665544 45
Q ss_pred CCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCCCCCCCcE
Q 036657 369 KAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGIHFVSPIT 445 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~ 445 (481)
.+++|++|++++|. +..+|. +..+++|++|+++++ .+..+|.. +..+++|++|+++++. + ...+++|+.
T Consensus 98 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-~-----~~~~~~l~~ 169 (208)
T 2o6s_A 98 KLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP-W-----DCTCPGIRY 169 (208)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC-B-----CCCTTTTHH
T ss_pred CccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC-e-----ecCCCCHHH
Confidence 66666666666663 555554 566666666666663 34444443 5556666666666531 1 112445666
Q ss_pred EEeecCCCCCccCCccccc
Q 036657 446 IDFSFCVNLTEFPQISGNI 464 (481)
Q Consensus 446 L~l~~c~~L~~lp~~~~~L 464 (481)
|+++++..-..+|..++++
T Consensus 170 L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHHHHHCTTTBBCTTSSB
T ss_pred HHHHHHhCCceeeccCccc
Confidence 6665544444566555555
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=150.62 Aligned_cols=177 Identities=18% Similarity=0.206 Sum_probs=119.3
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc--c
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK--G 366 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~--~ 366 (481)
..+++|+.|++++|.+. .....|..+..++ +|++|++++|.+..+|..+. +.+|++|++++|.+...+. .
T Consensus 344 ~~~~~L~~L~l~~n~l~------~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLS------FKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCTTCCEEECCSSCCB------EEEEEEHHHHTCS-CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccCCCCCEEeCcCCccC------ccccccccccccC-ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 45566666666665520 0111244556666 78888888777777776654 7788888888887776543 4
Q ss_pred ccCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCC-ccccccccCCCCCCEEeeeCCCCCccC-CCCCC-CC
Q 036657 367 EKKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDL-ACVRSSIENFNNLSMLCFKGCESLRSF-PRGIH-FV 441 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l-~~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~~~-l~ 441 (481)
+..+++|++|++++|. +.. .|. ++++++|++|++++|... ..+|..++.+++|+.|++++| .+..+ |..+. ++
T Consensus 417 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 417 FLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred hhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhccc
Confidence 6778888888888875 444 444 777888888888886533 357777888888888888875 45555 55553 78
Q ss_pred CCcEEEeecCCCCCccCC-c---ccccceEeeeCcCCcc
Q 036657 442 SPITIDFSFCVNLTEFPQ-I---SGNIIELKLWYTAIEE 476 (481)
Q Consensus 442 ~L~~L~l~~c~~L~~lp~-~---~~~L~~L~L~~~~l~~ 476 (481)
+|++|++++|. +..+|. . ..+|+.|++++|.+..
T Consensus 495 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 495 SLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccC
Confidence 88888888864 666654 2 3466788888887754
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=135.44 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=111.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE 346 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~ 346 (481)
..++.+.+....... +. .+..+++|+.|++++|.+ ..++. +..++ +|++|++++|.++.+|....
T Consensus 41 ~~L~~L~l~~n~i~~--l~--~l~~l~~L~~L~L~~N~i---------~~~~~-l~~l~-~L~~L~L~~N~l~~l~~~~~ 105 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS--LA--GMQFFTNLKELHLSHNQI---------SDLSP-LKDLT-KLEELSVNRNRLKNLNGIPS 105 (263)
T ss_dssp TTCSEEECTTSCCCC--CT--TGGGCTTCCEEECCSSCC---------CCCGG-GTTCS-SCCEEECCSSCCSCCTTCCC
T ss_pred CcCcEEECcCCCccc--ch--HHhhCCCCCEEECCCCcc---------CCChh-hccCC-CCCEEECCCCccCCcCcccc
Confidence 445555555443322 22 678888899999988873 34454 77777 88999999888888887655
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFK 426 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~ 426 (481)
.+|++|++++|+++.++ .+..+++|++|++++|. +..+|.++.+++|++|++++| .+..+ ..+..+++|+.|+++
T Consensus 106 -~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLT 180 (263)
T ss_dssp -SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEE
T ss_pred -CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCC
Confidence 88899999998888875 58888889999998884 888877888888999999885 45555 568888889999888
Q ss_pred CCCCCccCC
Q 036657 427 GCESLRSFP 435 (481)
Q Consensus 427 ~c~~l~~lp 435 (481)
++ .+...|
T Consensus 181 ~N-~~~~~~ 188 (263)
T 1xeu_A 181 GQ-KCVNEP 188 (263)
T ss_dssp EE-EEECCC
T ss_pred CC-cccCCc
Confidence 63 455444
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=145.99 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=77.7
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCC
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKA 370 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L 370 (481)
.+++|+.|++++|.+ ..+|. +. .+|++|++++|.++.+|. .+.+|++|++++|.++.+|. .+
T Consensus 98 ~l~~L~~L~Ls~N~l---------~~ip~-l~---~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l 159 (571)
T 3cvr_A 98 LPASLEYLDACDNRL---------STLPE-LP---ASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LP 159 (571)
T ss_dssp CCTTCCEEECCSSCC---------SCCCC-CC---TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CC
T ss_pred ccCCCCEEEccCCCC---------CCcch-hh---cCCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cC
Confidence 355666666666552 22444 22 256666666666666665 45566666666666666554 45
Q ss_pred CCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCC-------CEEeeeCCCCCccCCCCC-CCCC
Q 036657 371 FKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNL-------SMLCFKGCESLRSFPRGI-HFVS 442 (481)
Q Consensus 371 ~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L-------~~L~l~~c~~l~~lp~~~-~l~~ 442 (481)
++|++|++++|. +..+|.++ ++|+.|++++| .+..+|. ++. +| +.|++++ +.++.+|..+ .+++
T Consensus 160 ~~L~~L~Ls~N~-L~~lp~l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 160 TSLEVLSVRNNQ-LTFLPELP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDP 231 (571)
T ss_dssp TTCCEEECCSSC-CSCCCCCC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCT
T ss_pred CCcCEEECCCCC-CCCcchhh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCC
Confidence 566666666663 55555533 56666666653 4555555 433 44 6666664 3555666544 2666
Q ss_pred CcEEEeecCCCCCccCC
Q 036657 443 PITIDFSFCVNLTEFPQ 459 (481)
Q Consensus 443 L~~L~l~~c~~L~~lp~ 459 (481)
|+.|++++|+--..+|.
T Consensus 232 L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRE 248 (571)
T ss_dssp TEEEECCSSSCCHHHHH
T ss_pred CCEEEeeCCcCCCcCHH
Confidence 66666666543333443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.7e-14 Score=149.31 Aligned_cols=174 Identities=17% Similarity=0.193 Sum_probs=145.1
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
+..+.+|+.|++.+|.+ ..++ .+..++ +|+.|++++|.+..+|+...+.+|++|+|++|.+..+| .+.
T Consensus 39 ~~~L~~L~~L~l~~n~i---------~~l~-~l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI---------KSVQ-GIQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCCC---------CCCT-TGGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TST
T ss_pred hhcCCCCCEEECcCCCC---------CCCh-HHccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhc
Confidence 45678899999998873 3444 578888 99999999999999887334999999999999999876 688
Q ss_pred CCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEe
Q 036657 369 KAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDF 448 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l 448 (481)
.+++|++|+|++|. +..+|.+..+++|+.|+|++| .+..+ ..++.+++|+.|+|++| .+..++....+++|+.|+|
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYL 182 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred cCCCCCEEEecCCC-CCCCccccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchhhccCCCCCEEEC
Confidence 99999999999994 888888999999999999996 46666 57899999999999975 6777766445999999999
Q ss_pred ecCCCCCccCCc--ccccceEeeeCcCCccCCC
Q 036657 449 SFCVNLTEFPQI--SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 449 ~~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP~ 479 (481)
++|. +..+|.+ +.+|+.|+|++|.+...|.
T Consensus 183 s~N~-i~~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 183 SKNH-ISDLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CSSC-CCBCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred cCCC-CCCChHHccCCCCCEEEccCCcCcCCcc
Confidence 9975 8888763 5678999999999887764
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-15 Score=161.14 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=92.8
Q ss_pred hCCCchhHHHHhhhhCCC--ChhHHHHHHHHHhcCCchhhHHHHHhccccCchhh-HHHhhhhccCCCCCCHH--HHHHH
Q 036657 120 ADGNPLALEVLGSSLYHK--SKQQWKDKLNNLKLISEPSIYKVLKISYDELNSEV-KEIFIDIACFFKGEDID--FMTRI 194 (481)
Q Consensus 120 c~GlPLAl~~lg~~L~~k--~~~~W~~~l~~l~~~~~~~i~~~L~lSYd~L~~~~-K~cFl~~a~Fp~~~~~~--~l~~~ 194 (481)
|+|+||||+++|+.|+++ +..+|+.. ....|..+|++||+.||+++ |+||+|||+||+++.++ .+..+
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~L 395 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHH
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 999999999999999987 78889763 45789999999999999999 99999999999997764 48888
Q ss_pred hcCC-C-cccccHHHHhhCcceeecC-CCceehhHHHHHHH
Q 036657 195 HDDP-M-SIHDGLNILVSKSLITISD-ENELQMHDLLQEMG 232 (481)
Q Consensus 195 ~~~~-~-~~~~~~~~L~~r~li~~~~-~~~~~mHdll~d~~ 232 (481)
|.+. . .++.++++|+++|||+... .++|+|||++++++
T Consensus 396 W~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 8765 2 5778999999999999863 56899999999866
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=127.79 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=109.3
Q ss_pred ceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC-
Q 036657 314 KLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD- 389 (481)
Q Consensus 314 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~- 389 (481)
...+|..+. .+|++|++++|.+..+++ .|. +.+|++|+|++|++..+|.. +..+++|++|+|++| .+..+|.
T Consensus 31 l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSA 106 (229)
T ss_dssp CSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred cCccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChh
Confidence 445665433 489999999999888754 455 88999999999999988765 588999999999999 4888876
Q ss_pred -CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCC
Q 036657 390 -LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCV 452 (481)
Q Consensus 390 -~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~ 452 (481)
+..+++|++|++++ +.+..+|..++.+++|++|++++ +.+..+|.. + .+++|+.|++++++
T Consensus 107 ~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 78899999999998 56778999999999999999997 588888864 3 48999999999865
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=155.13 Aligned_cols=127 Identities=21% Similarity=0.359 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCC-----------chhhHHHHHhccccCchhhHHHh
Q 036657 108 DLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLIS-----------EPSIYKVLKISYDELNSEVKEIF 176 (481)
Q Consensus 108 ~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~-----------~~~i~~~L~lSYd~L~~~~K~cF 176 (481)
.+.+.+.+|+++|+|+||||+.+|+.|+.+. .+|+..++.+.... ...+..++..||+.||++.|.||
T Consensus 305 ~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l 383 (591)
T 1z6t_A 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYY 383 (591)
T ss_dssp GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHH
T ss_pred cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 3456789999999999999999999998763 47999999887542 35789999999999999999999
Q ss_pred hhhccCCCCCCHH--HHHHHhcCC-CcccccHHHHhhCcceeecCCC---ceehhHHHHHHHHHH
Q 036657 177 IDIACFFKGEDID--FMTRIHDDP-MSIHDGLNILVSKSLITISDEN---ELQMHDLLQEMGQTI 235 (481)
Q Consensus 177 l~~a~Fp~~~~~~--~l~~~~~~~-~~~~~~~~~L~~r~li~~~~~~---~~~mHdll~d~~~~i 235 (481)
+++|+||+|+.++ .+..+|... ..+..++++|+++||++...++ .|+||++++++++..
T Consensus 384 ~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 384 TDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999999986654 588888776 6678889999999999976432 699999999999876
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=126.06 Aligned_cols=133 Identities=14% Similarity=0.281 Sum_probs=98.6
Q ss_pred ceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC-
Q 036657 314 KLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD- 389 (481)
Q Consensus 314 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~- 389 (481)
...+|..+ +.+|+.|++++|.++.+|.. |. +.+|++|+|++|.+..+ |..+..+++|++|+|++| .+..+|.
T Consensus 23 l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 98 (220)
T 2v9t_B 23 LTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKS 98 (220)
T ss_dssp CSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred cCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHh
Confidence 34455543 34788888888888887763 55 78888888888888876 667888888888888888 4777776
Q ss_pred -CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCC
Q 036657 390 -LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCV 452 (481)
Q Consensus 390 -~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~ 452 (481)
|..+++|++|+++++. +..+ |..++.+++|++|++++ +.++.+|.. + .+++|++|++++++
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 6788888888888854 4444 45678888888888886 567777764 3 38888888888754
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-14 Score=127.98 Aligned_cols=156 Identities=24% Similarity=0.308 Sum_probs=122.6
Q ss_pred eecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--
Q 036657 315 LHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD-- 389 (481)
Q Consensus 315 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~-- 389 (481)
..+|..+ +.+|++|+++++.++.+|.. |. +.+|++|++++|+++.+|.. +..+++|++|++++|. +..+|.
T Consensus 20 ~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 95 (208)
T 2o6s_A 20 TSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV 95 (208)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhH
Confidence 4455433 34899999999999988876 44 89999999999999988775 5789999999999994 778876
Q ss_pred CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCCCCCccCCcccccce
Q 036657 390 LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCVNLTEFPQISGNIIE 466 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~~L~~lp~~~~~L~~ 466 (481)
++.+++|++|+++++ .+..+|.. ++.+++|++|++++ +.+..+|.. + .+++|+.|++++++-... ..+|+.
T Consensus 96 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~ 169 (208)
T 2o6s_A 96 FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRY 169 (208)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHH
T ss_pred hcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCeecC----CCCHHH
Confidence 789999999999985 56667655 78899999999997 578888775 3 489999999999753333 346778
Q ss_pred EeeeCcCCc-cCCCC
Q 036657 467 LKLWYTAIE-EVPSS 480 (481)
Q Consensus 467 L~L~~~~l~-~lP~s 480 (481)
|+++.|.++ .+|.+
T Consensus 170 L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 170 LSEWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHHHCTTTBBCT
T ss_pred HHHHHHhCCceeecc
Confidence 888877774 66654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=126.38 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=124.5
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
..+.++.+++.+..+|..+ +.+|++|+|++|.+..+ |..+..+++|++|++++|. +..+|. +..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCC
Confidence 4566888888999999866 48999999999999987 5668999999999999995 888886 79999999999999
Q ss_pred CCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCcc
Q 036657 404 CRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 404 c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~ 476 (481)
+ .+..+|.. ++.+++|++|++++ +.+..+|..+. +++|+.|+++++ .+..+|. .+.+|+.|+|++|.+..
T Consensus 98 N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 N-QLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred C-cCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 5 67777765 68999999999996 68999998775 999999999996 5888885 24578999999998753
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=151.42 Aligned_cols=173 Identities=14% Similarity=0.113 Sum_probs=136.3
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCCC-CCCCC-CCCceEEEcCCCCcccc-ccc
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKML-PFDFE-PENLIELNLPYSKVEQI-WKG 366 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~l-P~~~~-l~~L~~L~L~~~~i~~l-p~~ 366 (481)
-.++|+.|++++|.+ ....|..+..++ +|++|++++| ....+ |..|. +.+|++|+|++|.+..+ |..
T Consensus 22 lp~~l~~LdLs~N~i--------~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI--------RTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCC--------CEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECCCCcC--------CccChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 457999999999985 455678899999 9999999999 45566 55676 99999999999999977 788
Q ss_pred ccCCCCCcEEeccCCCCCcc-cCC---CCCCCCCCEEeccCCCCCccc--cccccCCCCCCEEeeeCCCCCccC-CCCCC
Q 036657 367 EKKAFKLKYIDISHSQQLVR-MLD---LSETPNLERTNLLNCRDLACV--RSSIENFNNLSMLCFKGCESLRSF-PRGIH 439 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~-lp~---~~~l~~L~~L~L~~c~~l~~l--p~~i~~L~~L~~L~l~~c~~l~~l-p~~~~ 439 (481)
+..+++|++|++++|. +.. +|. ++++++|++|++++|. +..+ +..++++++|++|+++++ .+..+ |..+.
T Consensus 93 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~ 169 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELE 169 (844)
T ss_dssp SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGH
T ss_pred ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcc
Confidence 9999999999999995 554 454 8999999999999965 4443 357999999999999984 45443 33332
Q ss_pred -C--CCCcEEEeecCCCCCccCCccc---------ccceEeeeCcCCc
Q 036657 440 -F--VSPITIDFSFCVNLTEFPQISG---------NIIELKLWYTAIE 475 (481)
Q Consensus 440 -l--~~L~~L~l~~c~~L~~lp~~~~---------~L~~L~L~~~~l~ 475 (481)
+ ++|+.|++++|.-....|..++ +|+.|++++|.++
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 4 8899999998764444544222 2789999988764
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=137.23 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=144.8
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccC-CCCCCC-CC-CCCceE-EEcCCCCccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSL-KMLPFD-FE-PENLIE-LNLPYSKVEQIW-KG 366 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l-~~lP~~-~~-l~~L~~-L~L~~~~i~~lp-~~ 366 (481)
++++.|++++|. ...+|. .|..++ +|++|++++|.+ +.+|.. |. +.+|.+ +.+.+|++..++ ..
T Consensus 30 ~~l~~L~Ls~N~---------i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTK---------LRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TTCSEEEEESCC---------CSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CCCCEEEccCCc---------CCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 689999999998 456775 588899 999999999987 457765 54 777654 667789999985 45
Q ss_pred ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCC-CCCCEEeeeCCCCCccCCCCC-CCC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENF-NNLSMLCFKGCESLRSFPRGI-HFV 441 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L-~~L~~L~l~~c~~l~~lp~~~-~l~ 441 (481)
+..+++|++|++++|. +..+|+ +....++..|++.++..+..+|.. +..+ ..|+.|++++ +.++.+|... ...
T Consensus 100 f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTE
T ss_pred hhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhcccc
Confidence 8999999999999994 888887 456667888999888888888864 4554 4689999996 7899998865 578
Q ss_pred CCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCCC
Q 036657 442 SPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 442 ~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~s 480 (481)
+|++|.+++++.++.+|.. +.+|+.|+|++|+|+.+|..
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 9999999998999999972 46789999999999999975
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=137.50 Aligned_cols=164 Identities=22% Similarity=0.270 Sum_probs=122.7
Q ss_pred cEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-C--CCCCceEEEcCCCCcccccc-cccCCC
Q 036657 296 RLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-F--EPENLIELNLPYSKVEQIWK-GEKKAF 371 (481)
Q Consensus 296 r~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~--~l~~L~~L~L~~~~i~~lp~-~~~~L~ 371 (481)
+++++.++. ...+|.. ++..+++|++++|.++.+|.. | .+.+|++|+|++|++..++. .+..++
T Consensus 21 ~~l~c~~~~---------l~~iP~~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 88 (361)
T 2xot_A 21 NILSCSKQQ---------LPNVPQS---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88 (361)
T ss_dssp TEEECCSSC---------CSSCCSS---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEEEeCCCC---------cCccCcc---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence 466666665 3445654 344788889998888888776 3 57889999999998888865 488889
Q ss_pred CCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCCC-----CCCCC
Q 036657 372 KLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRGI-----HFVSP 443 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~~-----~l~~L 443 (481)
+|++|+|++|. +..+|. |..+++|++|+|+++. +..+ |..+..+++|++|++++ +.+..+|... .+++|
T Consensus 89 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 89 NLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTC
T ss_pred CCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcC
Confidence 99999999884 777776 7888999999998854 4444 56788889999999986 5788888653 38889
Q ss_pred cEEEeecCCCCCccCC-ccc---c--cceEeeeCcCCc
Q 036657 444 ITIDFSFCVNLTEFPQ-ISG---N--IIELKLWYTAIE 475 (481)
Q Consensus 444 ~~L~l~~c~~L~~lp~-~~~---~--L~~L~L~~~~l~ 475 (481)
+.|+|+++ .+..+|. .+. + ++.|+|++|.+.
T Consensus 166 ~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 166 MLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999885 4888774 222 2 367888887764
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-15 Score=146.24 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=148.6
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCC--CC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKM--LP 342 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~--lP 342 (481)
...++.+.+....... ...+..+.++++|+.|++++|.+ ....+..+..++ +|++|++++| .++. +|
T Consensus 92 ~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l--------~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~ 161 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRL--------SDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQ 161 (336)
T ss_dssp CBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBC--------CHHHHHHHTTCT-TCSEEECTTCBSCCHHHHH
T ss_pred CCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCccc--------CHHHHHHHhcCC-CCCEEECCCCCCCCHHHHH
Confidence 3455666555332211 11345688999999999998874 345666777888 9999999999 5663 66
Q ss_pred CCCC-CCCceEEEcCCC-Cccc--ccccccCCC-CCcEEeccCCC-CC--cccCC-CCCCCCCCEEeccCCCCC-ccccc
Q 036657 343 FDFE-PENLIELNLPYS-KVEQ--IWKGEKKAF-KLKYIDISHSQ-QL--VRMLD-LSETPNLERTNLLNCRDL-ACVRS 412 (481)
Q Consensus 343 ~~~~-l~~L~~L~L~~~-~i~~--lp~~~~~L~-~L~~L~Ls~~~-~l--~~lp~-~~~l~~L~~L~L~~c~~l-~~lp~ 412 (481)
..+. +++|++|++++| .++. ++..+..++ +|++|++++|. .+ ..+|. +..+++|++|++++|..+ ...+.
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 6555 889999999999 8885 677788999 99999999994 23 44565 678999999999998744 45677
Q ss_pred cccCCCCCCEEeeeCCCCCccCC-CCC-CCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCCC
Q 036657 413 SIENFNNLSMLCFKGCESLRSFP-RGI-HFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 413 ~i~~L~~L~~L~l~~c~~l~~lp-~~~-~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP~ 479 (481)
.++.+++|++|++++|..+..-. ..+ ++++|+.|++++|-.-..+.....++..|++++|.++...+
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccC
Confidence 89999999999999986432211 123 49999999999982111222233468899999999976443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=146.01 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=80.8
Q ss_pred CCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccC
Q 036657 294 NLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKK 369 (481)
Q Consensus 294 ~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~ 369 (481)
+++.|++++|.+ ..+| ..|..++ +|++|++++|.++.+|+. |. +.+|++|+|++|+++.+|.+ +.+
T Consensus 53 ~~~~LdLs~N~i---------~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSFNPL---------RHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTTSCC---------CEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCEEEeeCCCC---------CCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 566777776663 3333 4566666 677777777766666654 44 66777777777777666643 566
Q ss_pred CCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCc--cccccccCCCCCCEEeeeCCCCCccCC
Q 036657 370 AFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLA--CVRSSIENFNNLSMLCFKGCESLRSFP 435 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~--~lp~~i~~L~~L~~L~l~~c~~l~~lp 435 (481)
+++|++|++++| .+..+|. |+++++|++|+++++. +. .+|..++.+++|++|++++ +.++.++
T Consensus 123 L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 189 (635)
T 4g8a_A 123 LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS-NKIQSIY 189 (635)
T ss_dssp CTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS-SCCCEEC
T ss_pred CCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccC-ccccccc
Confidence 777777777766 3666664 6667777777776643 22 3455566667777777765 3455544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=124.15 Aligned_cols=123 Identities=16% Similarity=0.233 Sum_probs=79.0
Q ss_pred cccceeeccccCCCCCC-C-CC-CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKMLPF-D-FE-PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~-~-~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~ 400 (481)
.+++|++++|.++.+++ . |. +.+|++|+|++|.++.++. .+..+++|++|++++|. +..+|. ++.+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEE
Confidence 56677777777776643 2 33 6777777777777776654 46677777777777773 555554 66777777777
Q ss_pred ccCCCCCccc-cccccCCCCCCEEeeeCCCCCccC-CCCCC-CCCCcEEEeecCC
Q 036657 401 LLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSF-PRGIH-FVSPITIDFSFCV 452 (481)
Q Consensus 401 L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~l-p~~~~-l~~L~~L~l~~c~ 452 (481)
++++. +..+ |..+..+++|++|++++ +.++.+ |..+. +++|++|++++++
T Consensus 112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSC-CCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCc-CCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77743 4443 45566777777777775 456655 33443 7777777776644
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=121.48 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=120.6
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCccc-CC-CCCCCCCCEEeccCC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRM-LD-LSETPNLERTNLLNC 404 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~l-p~-~~~l~~L~~L~L~~c 404 (481)
-+.++.+++.++.+|..+. .+|++|++++|+++.++. .+..+++|++|++++|. +..+ |. |.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~- 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYG- 89 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCS-
T ss_pred CCEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCC-
Confidence 3567888999999998764 799999999999999876 58999999999999995 7777 44 99999999999999
Q ss_pred CCCcccccc-ccCCCCCCEEeeeCCCCCccCCC-CC-CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCc
Q 036657 405 RDLACVRSS-IENFNNLSMLCFKGCESLRSFPR-GI-HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIE 475 (481)
Q Consensus 405 ~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~-~~-~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~ 475 (481)
+.+..+|.. +..+++|++|++++ +.+..++. .+ ++++|+.|+++++. +..+|.. +.+|++|+|++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 567788876 68899999999997 57887754 44 49999999999965 8888762 457799999999874
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=120.55 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=59.5
Q ss_pred CCceEEEcCCCCcc--cccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEee
Q 036657 348 ENLIELNLPYSKVE--QIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCF 425 (481)
Q Consensus 348 ~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l 425 (481)
.+|++|++++|.+. .+|..+..+++|++|++++|. +..++.++.+++|++|++++|.....+|..++++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34444444444444 444444445555555555542 444433445555555555543322224444444555555555
Q ss_pred eCCCCCccCC--CCC-CCCCCcEEEeecCCCCCccCC-------cccccceEeeeCcCCccCCC
Q 036657 426 KGCESLRSFP--RGI-HFVSPITIDFSFCVNLTEFPQ-------ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 426 ~~c~~l~~lp--~~~-~l~~L~~L~l~~c~~L~~lp~-------~~~~L~~L~L~~~~l~~lP~ 479 (481)
++| .++.+| ..+ .+++|+.|++++|. +..+|. .+++|++|++++|.+.++|.
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 542 444443 222 25555555555543 444443 12344555555555555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=121.17 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=118.3
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc--cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
-+.++++++.++.+|..+ +..+++|+|++|+++.++. .+..+++|++|++++|. +..+|. |+++++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCC
Confidence 457889999999999866 4677999999999998843 37899999999999995 888875 99999999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeeCCCCCccCC-CCC-CCCCCcEEEeecCCCCCcc-CCc---ccccceEeeeCcCCc
Q 036657 404 CRDLACVRS-SIENFNNLSMLCFKGCESLRSFP-RGI-HFVSPITIDFSFCVNLTEF-PQI---SGNIIELKLWYTAIE 475 (481)
Q Consensus 404 c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp-~~~-~l~~L~~L~l~~c~~L~~l-p~~---~~~L~~L~L~~~~l~ 475 (481)
+ .+..+|. .++.+++|++|++++ +.+..++ ..+ ++++|+.|+++++. +..+ |.. +.+|++|+|++|.+.
T Consensus 91 N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 N-RLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp S-CCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred C-ccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5 4566655 489999999999997 5777774 445 49999999999964 7777 544 456789999999875
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=130.54 Aligned_cols=147 Identities=16% Similarity=0.236 Sum_probs=124.9
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc-cc-CCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG-EK-KAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~-~~-~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
-+.++++++.++.+|..+ +..+++|+|++|+++.++.. +. .+++|++|+|++|. +..+|. |..+++|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC
Confidence 467899999999999865 46799999999999999876 44 89999999999994 888875 99999999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeeCCCCCccCC-CCC-CCCCCcEEEeecCCCCCccCCc-------ccccceEeeeCcC
Q 036657 404 CRDLACVRS-SIENFNNLSMLCFKGCESLRSFP-RGI-HFVSPITIDFSFCVNLTEFPQI-------SGNIIELKLWYTA 473 (481)
Q Consensus 404 c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp-~~~-~l~~L~~L~l~~c~~L~~lp~~-------~~~L~~L~L~~~~ 473 (481)
+ .+..+|. .+..+++|+.|++++ +.+..++ ..+ ++++|+.|+|+++ .+..+|.. +.+|+.|+|++|.
T Consensus 98 N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 N-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred C-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 5 5777765 488999999999997 5677775 445 4999999999996 48888863 4678999999999
Q ss_pred CccCCC
Q 036657 474 IEEVPS 479 (481)
Q Consensus 474 l~~lP~ 479 (481)
|+.+|.
T Consensus 175 l~~l~~ 180 (361)
T 2xot_A 175 LKKLPL 180 (361)
T ss_dssp CCCCCH
T ss_pred CCccCH
Confidence 999883
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-14 Score=141.67 Aligned_cols=176 Identities=13% Similarity=0.116 Sum_probs=133.4
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC-CCCCCCC-CCCceEEEcCCC-Ccc--cc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK-MLPFDFE-PENLIELNLPYS-KVE--QI 363 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lP~~~~-l~~L~~L~L~~~-~i~--~l 363 (481)
+.++++|+.|++++|.+ ....++..+..++ +|++|++++|.+. ..|..+. +++|++|++++| .++ .+
T Consensus 89 ~~~~~~L~~L~L~~~~l-------~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVI-------EVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp CCCCBCCCEEECTTCEE-------CHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred hccCCCCCEEEccCCCc-------CHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHH
Confidence 45789999999998763 0122666778888 9999999999876 3454444 889999999999 677 36
Q ss_pred cccccCCCCCcEEeccCCCCCcc--cCC-CCCCC-CCCEEeccCCC-CC--ccccccccCCCCCCEEeeeCCCCCc-cCC
Q 036657 364 WKGEKKAFKLKYIDISHSQQLVR--MLD-LSETP-NLERTNLLNCR-DL--ACVRSSIENFNNLSMLCFKGCESLR-SFP 435 (481)
Q Consensus 364 p~~~~~L~~L~~L~Ls~~~~l~~--lp~-~~~l~-~L~~L~L~~c~-~l--~~lp~~i~~L~~L~~L~l~~c~~l~-~lp 435 (481)
+..+..+++|++|++++|..+.. +|. +..++ +|++|++++|. .+ ..+|..++++++|++|++++|..++ ..+
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 77788899999999999944664 455 77888 99999999985 33 4577778889999999999886554 334
Q ss_pred CCC-CCCCCcEEEeecCCCCCcc--C--CcccccceEeeeCc
Q 036657 436 RGI-HFVSPITIDFSFCVNLTEF--P--QISGNIIELKLWYT 472 (481)
Q Consensus 436 ~~~-~l~~L~~L~l~~c~~L~~l--p--~~~~~L~~L~L~~~ 472 (481)
..+ ++++|++|++++|..+..- . ...++|++|++++|
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 444 4899999999998744321 1 12567899999987
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-15 Score=160.83 Aligned_cols=177 Identities=14% Similarity=0.091 Sum_probs=107.7
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecccc--------------CCCCCCCCC-CCCceEEE
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYS--------------LKMLPFDFE-PENLIELN 354 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~--------------l~~lP~~~~-l~~L~~L~ 354 (481)
...++|+.|++++|. ...+|..++.++ +|+.|+++++. ....|..+. +.+|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~---------L~~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELSVEK---------STVLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCCCHHH---------HHHHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccCChhh---------HHhhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCc
Confidence 446677777777666 456777777777 77777765542 122233333 55566665
Q ss_pred -cCCCCcccccc------cccC--CCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEee
Q 036657 355 -LPYSKVEQIWK------GEKK--AFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCF 425 (481)
Q Consensus 355 -L~~~~i~~lp~------~~~~--L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l 425 (481)
++.+.+..++. .+.. ...|+.|++++| .+..+|.++.+++|+.|++++| .+..+|..++++++|+.|++
T Consensus 416 ~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEEC
T ss_pred chhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCcc-cccccchhhhcCCCCCEEEC
Confidence 44443332221 0111 124777777777 4667777777777777777773 45577777777777777777
Q ss_pred eCCCCCccCCCCCCCCCCcEEEeecCCCCCcc--CCc---ccccceEeeeCcCCccCCCC
Q 036657 426 KGCESLRSFPRGIHFVSPITIDFSFCVNLTEF--PQI---SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 426 ~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~l--p~~---~~~L~~L~L~~~~l~~lP~s 480 (481)
++ +.++.+|...++++|+.|++++|. +..+ |.. +.+|+.|+|++|.++.+|+.
T Consensus 494 s~-N~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 494 SD-NALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CS-SCCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CC-CCCCCCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 75 466667632247777777777753 6666 553 33557777777777776653
|
| >3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-15 Score=126.06 Aligned_cols=82 Identities=15% Similarity=0.346 Sum_probs=61.6
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhHhhCCCeEEeEEeecC----CcccccccCcHHHHHHHHHhcCc-
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCKKMNGQIVIPVFYQVD----PSDVRKQRGTFEKAFVHHENNFP- 76 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~~~~~~~v~pvfy~v~----p~~v~~q~g~~~~~~~~~~~~~~- 76 (481)
++.+||++||..|+|||+||++|.||+.|+..++.|.......|+||||+|+ |..++....... ..++..|.
T Consensus 57 ~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~ 133 (146)
T 3ub2_A 57 ELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQ 133 (146)
T ss_dssp EECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHH
T ss_pred HHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHH
Confidence 5678999999999999999999999999999999986333336779999998 455565543221 12223333
Q ss_pred --hhhhhHHHHH
Q 036657 77 --DKVQKWRDVL 86 (481)
Q Consensus 77 --~~v~~w~~al 86 (481)
+.|.+|++||
T Consensus 134 l~~~v~~~~~~~ 145 (146)
T 3ub2_A 134 VKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 6788998875
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-13 Score=118.05 Aligned_cols=132 Identities=16% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccc-ccccccC
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQ-IWKGEKK 369 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~-lp~~~~~ 369 (481)
.++|+.|++++|.+ ....+|..+..++ +|++|++++|.++.+ ..+. +.+|++|++++|.+.. +|..+..
T Consensus 23 ~~~L~~L~l~~n~l-------~~~~i~~~~~~l~-~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKS-------NDGKIEGLTAEFV-NLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBC-------BTTBCSSCCGGGG-GCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCC-------ChhhHHHHHHhCC-CCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 35667777776653 0125566666666 666666666666665 3333 6666666666666665 4444555
Q ss_pred CCCCcEEeccCCCCCcccC--C-CCCCCCCCEEeccCCCCCccccc----cccCCCCCCEEeeeCCCCCccCC
Q 036657 370 AFKLKYIDISHSQQLVRML--D-LSETPNLERTNLLNCRDLACVRS----SIENFNNLSMLCFKGCESLRSFP 435 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp--~-~~~l~~L~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~c~~l~~lp 435 (481)
+++|++|++++|. +..+| . ++.+++|++|++++| .+..+|. .+..+++|++|++++| ....+|
T Consensus 94 l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 94 LPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp CTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred CCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 6666666666663 55544 2 555666666666653 3444443 4555555666555543 344444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=150.09 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=60.7
Q ss_pred CCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCC
Q 036657 318 DQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPN 395 (481)
Q Consensus 318 ~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~ 395 (481)
++.+..++ .|+.|++++|.+..+|..+. +.+|++|+|++|.++.+|..+..|++|++|+|++|. +..+|. ++.+++
T Consensus 217 ~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred hhhhccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 34445555 56666666666666655433 566666666666666666666666666666666663 555555 556666
Q ss_pred CCEEeccCCCCCccccccccCCCCCCEEeeeC
Q 036657 396 LERTNLLNCRDLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 396 L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
|++|+|++| .+..+|..|++|++|++|+|++
T Consensus 295 L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSEEECCSS-CCCCCCSSTTSCTTCCCEECTT
T ss_pred CCEEECCCC-CCCccChhhhcCCCccEEeCCC
Confidence 666666653 4455665566666666666665
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-14 Score=142.07 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=136.7
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC-----CCCCC-C---------CCce
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML-----PFDFE-P---------ENLI 351 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-----P~~~~-l---------~~L~ 351 (481)
..|..+++|+.|++++|.+. ......+|..+..++ +|++|++++|.+... +..+. + ++|+
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFG----PTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCC----TTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHhhCCcccEEECCCCcCC----HHHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 34578899999999988851 001114666777788 999999999987532 22221 3 7999
Q ss_pred EEEcCCCCcc--ccc---ccccCCCCCcEEeccCCCCCc------ccC-CCCCCCCCCEEeccCCCCC----cccccccc
Q 036657 352 ELNLPYSKVE--QIW---KGEKKAFKLKYIDISHSQQLV------RML-DLSETPNLERTNLLNCRDL----ACVRSSIE 415 (481)
Q Consensus 352 ~L~L~~~~i~--~lp---~~~~~L~~L~~L~Ls~~~~l~------~lp-~~~~l~~L~~L~L~~c~~l----~~lp~~i~ 415 (481)
+|++++|++. .+| ..+..+++|++|++++|. +. -+| .+..+++|++|++++|..- ..+|..+.
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 9999999886 444 467788999999999994 66 355 5888999999999997532 66788889
Q ss_pred CCCCCCEEeeeCCCCCcc-----CCCCC---CCCCCcEEEeecCCCCCc-----cCCc----ccccceEeeeCcCCccCC
Q 036657 416 NFNNLSMLCFKGCESLRS-----FPRGI---HFVSPITIDFSFCVNLTE-----FPQI----SGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 416 ~L~~L~~L~l~~c~~l~~-----lp~~~---~l~~L~~L~l~~c~~L~~-----lp~~----~~~L~~L~L~~~~l~~lP 478 (481)
.+++|++|++++| .+.. +|..+ .+++|++|++++|. +.. +|.. +++|++|++++|.++..+
T Consensus 242 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 242 SWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999999999976 4544 24433 27899999999976 666 7764 378899999999987543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.3e-12 Score=133.57 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=125.0
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC--CC-CCCceEEEcCCCCccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD--FE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~--~~-l~~L~~L~L~~~~i~~ 362 (481)
+..+..+.+|+.|++..+. ....+..+..++ .|+.+++.++.....+.. |. +.+|+.+++++|.+..
T Consensus 390 ~~~~~~~~~L~~L~~~~~~---------~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNG---------VITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp CHHHHSCSCCCEEECCSCS---------EEEECSCCTTCT-TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccchhhhhhhhhhhccccc---------cccccccccccc-cccchhhhhcccccccccccccccccccccccccccccc
Confidence 3444556666666666554 445566677777 888888877765544332 33 7888888888888876
Q ss_pred cc-ccccCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEeccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCC-
Q 036657 363 IW-KGEKKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRG- 437 (481)
Q Consensus 363 lp-~~~~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~- 437 (481)
++ ..+..++.|+.|++++|..... .|+ ++.+++|++|+|++|. +..+ |..++++++|+.|++++ +++..+|..
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~ 537 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFP 537 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT-SCCCBCCCGG
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC-CcCCCCChhH
Confidence 54 4467788899999988864444 455 8888899999999864 5555 56688889999999986 578887764
Q ss_pred C-CCCCCcEEEeecCCCCCccCC-c----ccccceEeeeCcCCc
Q 036657 438 I-HFVSPITIDFSFCVNLTEFPQ-I----SGNIIELKLWYTAIE 475 (481)
Q Consensus 438 ~-~l~~L~~L~l~~c~~L~~lp~-~----~~~L~~L~L~~~~l~ 475 (481)
+ ++++|+.|+++++. +..+|. . ..+|++|+|++|.+.
T Consensus 538 ~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp GTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred HhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 3 48889999998865 666543 2 256788888877664
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=113.65 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=47.2
Q ss_pred cccceeeccccCC--CCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcc-cCC-CCCCCCCCEEec
Q 036657 327 ELRYLHWHEYSLK--MLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVR-MLD-LSETPNLERTNL 401 (481)
Q Consensus 327 ~Lr~L~l~~~~l~--~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~-lp~-~~~l~~L~~L~L 401 (481)
+|+.|++++|.+. .+|..+. +.+|++|++++|.++.+ ..+..+++|++|++++|. +.. +|. ++.+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEEC
Confidence 4444444444444 4444433 44444444444444444 334444455555554442 333 333 333444555555
Q ss_pred cCCCCCcccc--ccccCCCCCCEEeeeCCCCCccCCC
Q 036657 402 LNCRDLACVR--SSIENFNNLSMLCFKGCESLRSFPR 436 (481)
Q Consensus 402 ~~c~~l~~lp--~~i~~L~~L~~L~l~~c~~l~~lp~ 436 (481)
++| .+..+| ..++.+++|++|++++| .+..+|.
T Consensus 96 s~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 96 SGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp TTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred CCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 443 233332 34444555555555542 3444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.6e-12 Score=112.95 Aligned_cols=120 Identities=19% Similarity=0.326 Sum_probs=86.5
Q ss_pred cceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCC
Q 036657 329 RYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRD 406 (481)
Q Consensus 329 r~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~ 406 (481)
++++++++.++.+|..+ +.+|++|++++|.++.+|..+..+++|++|++++|. +..++. |.++++|++|+++++ .
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-c
Confidence 45677777777777654 367788888888887777777778888888888774 666664 777888888888874 4
Q ss_pred Cccccc-cccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEEEeecCC
Q 036657 407 LACVRS-SIENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITIDFSFCV 452 (481)
Q Consensus 407 l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L~l~~c~ 452 (481)
+..++. .++.+++|++|++++ +.+..+|.. + .+++|+.|++++++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 555554 477778888888876 567777764 3 37788888887643
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-13 Score=113.89 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=105.3
Q ss_pred CCCCcEEEEeCCCCCCCcccCcc-eecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccc-cccccc
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSK-LHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQ-IWKGEK 368 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~-~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~-lp~~~~ 368 (481)
.++|+.|++++|.+ . ..+|..+..++ +|++|++++|.++.+ ..+. +.+|++|++++|.+.. +|..+.
T Consensus 16 ~~~l~~L~l~~n~l--------~~~~~~~~~~~l~-~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRS--------NEGKLEGLTDEFE-ELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBC--------BTTBCCSCCTTCT-TCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CccCeEEEccCCcC--------ChhHHHHHHhhcC-CCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 47899999999874 2 37888888888 999999999999988 4454 9999999999999998 787788
Q ss_pred CCCCCcEEeccCCCCCcccC--C-CCCCCCCCEEeccCCCCCccccc----cccCCCCCCEEeeeC
Q 036657 369 KAFKLKYIDISHSQQLVRML--D-LSETPNLERTNLLNCRDLACVRS----SIENFNNLSMLCFKG 427 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp--~-~~~l~~L~~L~L~~c~~l~~lp~----~i~~L~~L~~L~l~~ 427 (481)
.+++|++|++++|. +..+| . ++.+++|++|++++| .+..+|. .++.+++|+.|++++
T Consensus 86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 89999999999995 77764 4 899999999999996 5677765 688999999998863
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=116.23 Aligned_cols=122 Identities=15% Similarity=0.228 Sum_probs=66.0
Q ss_pred cccceeeccccCCCCCCCCCC-CCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEP-ENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l-~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
+|+.|++++|.++.+|....+ .+|++|++++|.++.+ ..+..+++|++|++++|. +..+|. ++.+++|++|++++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCS
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCC
Confidence 455555555555544432222 2556666666655555 445556666666666653 555553 35566666666665
Q ss_pred CCCCccccc--cccCCCCCCEEeeeCCCCCccCCCC----C-CCCCCcEEEeecCC
Q 036657 404 CRDLACVRS--SIENFNNLSMLCFKGCESLRSFPRG----I-HFVSPITIDFSFCV 452 (481)
Q Consensus 404 c~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~----~-~l~~L~~L~l~~c~ 452 (481)
| .+..+|. .++.+++|++|++++ +.+..+|.. + .+++|+.|+++++.
T Consensus 98 N-~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 N-SLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp C-CCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred C-cCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 3 3455554 555666666666665 345555553 2 26666666666543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-13 Score=146.22 Aligned_cols=152 Identities=12% Similarity=0.035 Sum_probs=111.4
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~ 362 (481)
+.+..|..+.+|+.|++++|. ...+|..+..++ +|++|++++|.++.+|..|. +.+|++|+|++|.++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~---------l~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ---------IFNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp -------CCCCCCEEECTTSC---------CSCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred cChhhhccCCCCcEEECCCCC---------CCCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 557789999999999999998 457888888998 99999999999999999887 9999999999999999
Q ss_pred ccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCC-CCEEeeeCCCCCccCCCCCCC
Q 036657 363 IWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNN-LSMLCFKGCESLRSFPRGIHF 440 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~-L~~L~l~~c~~l~~lp~~~~l 440 (481)
+|..+..|++|++|+|++| .+..+|. |+.+++|++|+|++|.....+|..++.+.. +..|+++++.--..+ +
T Consensus 285 lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p 358 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-----P 358 (727)
T ss_dssp CCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-----C
T ss_pred cChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC-----c
Confidence 9999999999999999999 5899998 999999999999997654456655544321 223556653222222 3
Q ss_pred CCCcEEEeecC
Q 036657 441 VSPITIDFSFC 451 (481)
Q Consensus 441 ~~L~~L~l~~c 451 (481)
..|+.|+++.+
T Consensus 359 ~~l~~l~l~~n 369 (727)
T 4b8c_D 359 HERRFIEINTD 369 (727)
T ss_dssp CC---------
T ss_pred cccceeEeecc
Confidence 35666666654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=115.06 Aligned_cols=130 Identities=16% Similarity=0.200 Sum_probs=108.0
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~ 365 (481)
..|..+.+|+.|++++|.+ ..+|. +..+..+|++|++++|.++.++ .+. +.+|++|++++|.++.+|.
T Consensus 13 ~~~~~~~~L~~L~l~~n~l---------~~i~~-~~~~~~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI---------PVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp CEEECTTSCEEEECTTSCC---------CSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECS
T ss_pred HhcCCcCCceEEEeeCCCC---------chhHH-hhhcCCCCCEEECCCCCCCccc-ccccCCCCCEEECCCCcccccCc
Confidence 3466788999999999984 34554 4444449999999999999884 444 9999999999999999987
Q ss_pred cc-cCCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccCCCCCcccccc----ccCCCCCCEEeeeCCC
Q 036657 366 GE-KKAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLNCRDLACVRSS----IENFNNLSMLCFKGCE 429 (481)
Q Consensus 366 ~~-~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~c~~l~~lp~~----i~~L~~L~~L~l~~c~ 429 (481)
++ ..+++|++|++++|. +..+|. ++.+++|++|++++| .+..+|.. ++.+++|+.|+++++.
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 75 899999999999994 788885 788999999999995 56778875 8999999999999753
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-13 Score=139.00 Aligned_cols=200 Identities=16% Similarity=0.176 Sum_probs=144.0
Q ss_pred cceeeeeecCCccccccc--ChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcc-------ccccccccceeecccc
Q 036657 267 DKVEGIFLDLSKINDIHL--NPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGL-------EYLPEELRYLHWHEYS 337 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~--~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l-------~~l~~~Lr~L~l~~~~ 337 (481)
..++.+.+.......... -...|.++++|+.|++++|... .....+|.++ ..++ +|++|++++|.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-----~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~ 105 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-----RVKDEIPEALRLLLQALLKCP-KLHTVRLSDNA 105 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-----SCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC-----ccccchhHHHHHHHHHHhhCC-cccEEECCCCc
Confidence 346666655443321111 1234778999999999987521 0012334333 6777 99999999999
Q ss_pred CCC-----CCCCCC-CCCceEEEcCCCCccc-----ccccccCC---------CCCcEEeccCCCCCc--ccC---C-CC
Q 036657 338 LKM-----LPFDFE-PENLIELNLPYSKVEQ-----IWKGEKKA---------FKLKYIDISHSQQLV--RML---D-LS 391 (481)
Q Consensus 338 l~~-----lP~~~~-l~~L~~L~L~~~~i~~-----lp~~~~~L---------~~L~~L~Ls~~~~l~--~lp---~-~~ 391 (481)
+.. +|..+. +++|++|+|++|.+.. ++..+..+ ++|++|++++|. +. .+| . +.
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQ 184 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHH
Confidence 876 666665 8999999999999863 34445455 899999999995 53 455 2 66
Q ss_pred CCCCCCEEeccCCCCCc------cccccccCCCCCCEEeeeCCCCC-----ccCCCCCC-CCCCcEEEeecCCCCCc---
Q 036657 392 ETPNLERTNLLNCRDLA------CVRSSIENFNNLSMLCFKGCESL-----RSFPRGIH-FVSPITIDFSFCVNLTE--- 456 (481)
Q Consensus 392 ~l~~L~~L~L~~c~~l~------~lp~~i~~L~~L~~L~l~~c~~l-----~~lp~~~~-l~~L~~L~l~~c~~L~~--- 456 (481)
.+++|++|++++|. +. -.|..+..+++|++|++++| .+ ..+|..+. +++|++|++++|. +..
T Consensus 185 ~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~ 261 (386)
T 2ca6_A 185 SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA 261 (386)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred hCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhH
Confidence 78899999999974 43 23447889999999999975 46 55666554 8999999999986 654
Q ss_pred --cCCc-----ccccceEeeeCcCCcc
Q 036657 457 --FPQI-----SGNIIELKLWYTAIEE 476 (481)
Q Consensus 457 --lp~~-----~~~L~~L~L~~~~l~~ 476 (481)
+|.. ..+|++|+|++|.|+.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 3443 5778999999999976
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.1e-12 Score=132.81 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=119.8
Q ss_pred hHhhccCCCCcEEEEeCCCCCCC-----cccCcceecCCcccccccccccee-eccccCCCCCCC---------CCCCCc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDI-----PIMSSKLHLDQGLEYLPEELRYLH-WHEYSLKMLPFD---------FEPENL 350 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~-----~~~~~~~~l~~~l~~l~~~Lr~L~-l~~~~l~~lP~~---------~~l~~L 350 (481)
+..+.++++|+.|++++|....+ .........|..++.++ +|+.|+ ++.+.+..++.. +....|
T Consensus 365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L 443 (567)
T 1dce_A 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-hcccCcchhhcccchhhhhhhhcccccccCccCc
Confidence 66778888888888754420000 00001234455666666 777776 444432222210 012358
Q ss_pred eEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCC
Q 036657 351 IELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCE 429 (481)
Q Consensus 351 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~ 429 (481)
++|+|++|.++.+|. +..+++|++|++++|. +..+|. ++.+++|++|+|++ +.+..+| .++.+++|+.|++++ +
T Consensus 444 ~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~-N 518 (567)
T 1dce_A 444 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCN-N 518 (567)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCS-S
T ss_pred eEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCC-C
Confidence 888888888888886 8888888888888884 778887 88888888888888 4566777 788888888888886 5
Q ss_pred CCccC--CCCCC-CCCCcEEEeecCCCCCccCCc-------ccccceEee
Q 036657 430 SLRSF--PRGIH-FVSPITIDFSFCVNLTEFPQI-------SGNIIELKL 469 (481)
Q Consensus 430 ~l~~l--p~~~~-l~~L~~L~l~~c~~L~~lp~~-------~~~L~~L~L 469 (481)
.+..+ |..+. +++|+.|++++|+ +..+|.. +++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 77777 66664 8888888888864 7776653 345666653
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=109.99 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=52.5
Q ss_pred cccceeeccccCCCCCCC--CC-CCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEe
Q 036657 327 ELRYLHWHEYSLKMLPFD--FE-PENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTN 400 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~--~~-l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~ 400 (481)
++++|++++|.+..+|.. |. +.+|++|+|++|.++.+ |..+..+++|++|++++|. +..+|. ++.+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEE
Confidence 555555555555555543 33 55555555555555544 3445555555555555553 444443 55555555555
Q ss_pred ccCCCCCccccccccCCCCCCEEeeeC
Q 036657 401 LLNCRDLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
++++......|..++.+++|++|++++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 555332222344455555555555554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=108.42 Aligned_cols=121 Identities=13% Similarity=0.167 Sum_probs=102.2
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc--ccCCCCCcEEeccCCCCCccc-CC-CCCCCCCCEEeccC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG--EKKAFKLKYIDISHSQQLVRM-LD-LSETPNLERTNLLN 403 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~Ls~~~~l~~l-p~-~~~l~~L~~L~L~~ 403 (481)
-++++++++.++.+|..+. .+|++|++++|++..++.. +..+++|++|++++|. +..+ |. ++.+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCC
Confidence 4788999999999998764 4999999999999998864 8999999999999995 7777 54 99999999999999
Q ss_pred CCCCccccc-cccCCCCCCEEeeeCCCCCccC-CCCCC-CCCCcEEEeecCC
Q 036657 404 CRDLACVRS-SIENFNNLSMLCFKGCESLRSF-PRGIH-FVSPITIDFSFCV 452 (481)
Q Consensus 404 c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~l-p~~~~-l~~L~~L~l~~c~ 452 (481)
+ .+..++. .++.+++|++|++++ +.+..+ |..+. +++|++|++++++
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 N-KIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp C-CCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred C-cCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 5 5666655 488999999999997 567766 55554 9999999999865
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=109.60 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=86.3
Q ss_pred cEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccc-cccCCCCC
Q 036657 296 RLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWK-GEKKAFKL 373 (481)
Q Consensus 296 r~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L 373 (481)
++++++++. ...+|..+ +.+|++|++++|.++.+|..|. +.+|++|+|++|.++.++. .+..+++|
T Consensus 13 ~~l~~~~~~---------l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKG---------LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSC---------CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEcCCCC---------CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 456666555 34555543 3478888888888888886665 7888888888888887764 47788888
Q ss_pred cEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeC
Q 036657 374 KYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKG 427 (481)
Q Consensus 374 ~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~ 427 (481)
++|+|++|. +..+|. |+.+++|++|++++ +.+..+|.. +..+++|+.|++++
T Consensus 81 ~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 81 LTLILSYNR-LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CEEECCSSC-CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCc-cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC
Confidence 888888884 777764 78888888888887 456666654 77788888888876
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=103.36 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=92.0
Q ss_pred cccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
..+.++++++.++.+|..+ +.+|++|++++|++..+|.. +..+++|++|++++| .+..+|. ++.+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 3456777777777777554 46888888888888877665 577888888888888 4777775 67888888888888
Q ss_pred CCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecCC
Q 036657 404 CRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFCV 452 (481)
Q Consensus 404 c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~ 452 (481)
+ .+..+|.. ++.+++|++|++++ +.++.+|... .+++|++|++++++
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCC
Confidence 4 56666654 67788888888886 4777887754 38888888888865
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-12 Score=129.43 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=133.4
Q ss_pred ceeeeeecCCcccccccCh----HhhccCC-CCcEEEEeCCCCCCCcccCcceecCCccccc----cccccceeeccccC
Q 036657 268 KVEGIFLDLSKINDIHLNP----QAFANMS-NLRLLKFYMPKHNDIPIMSSKLHLDQGLEYL----PEELRYLHWHEYSL 338 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~----~~f~~l~-~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l----~~~Lr~L~l~~~~l 338 (481)
.++.+.+..... ..... ..|.+++ +|+.|++++|.+ ....+..+..+ +.+|++|++++|.+
T Consensus 23 ~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--------~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 23 GVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSL--------GFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp TCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCG--------GGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCC--------CHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 466666554443 23334 7788888 899999999884 22223333333 23899999999998
Q ss_pred CCCCCC-----CC-C-CCceEEEcCCCCccccccc-----ccCC-CCCcEEeccCCCCCc-----ccCC-CCCCC-CCCE
Q 036657 339 KMLPFD-----FE-P-ENLIELNLPYSKVEQIWKG-----EKKA-FKLKYIDISHSQQLV-----RMLD-LSETP-NLER 398 (481)
Q Consensus 339 ~~lP~~-----~~-l-~~L~~L~L~~~~i~~lp~~-----~~~L-~~L~~L~Ls~~~~l~-----~lp~-~~~l~-~L~~ 398 (481)
...+.. +. + .+|++|++++|.+...+.. +..+ .+|++|++++|. +. .++. +..++ +|++
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccE
Confidence 865543 22 3 7999999999998876542 4443 699999999994 65 3333 44555 9999
Q ss_pred EeccCCCCCccccc----cccCC-CCCCEEeeeCCCCCcc-----CCCCCC--CCCCcEEEeecCCCCCccCC-------
Q 036657 399 TNLLNCRDLACVRS----SIENF-NNLSMLCFKGCESLRS-----FPRGIH--FVSPITIDFSFCVNLTEFPQ------- 459 (481)
Q Consensus 399 L~L~~c~~l~~lp~----~i~~L-~~L~~L~l~~c~~l~~-----lp~~~~--l~~L~~L~l~~c~~L~~lp~------- 459 (481)
|++++|.--...+. .+..+ ++|++|++++| .+.. ++..+. .++|++|++++|. +...+.
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~ 249 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLK 249 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHH
Confidence 99999753333332 34455 59999999975 5666 444442 4689999999975 665432
Q ss_pred -cccccceEeeeCcCCccC
Q 036657 460 -ISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 460 -~~~~L~~L~L~~~~l~~l 477 (481)
...+|+.|+|++|.+..+
T Consensus 250 ~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTC
T ss_pred hcCCCccEEEeccCCcccc
Confidence 346789999999885443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-12 Score=127.29 Aligned_cols=201 Identities=13% Similarity=0.083 Sum_probs=138.3
Q ss_pred ceeeeeecCCcccccccChHhhccC-----CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANM-----SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLP 342 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l-----~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP 342 (481)
.++.+.+..+.. .......|..+ ++|+.|++++|.+. +.....+...+..++.+|++|++++|.+...+
T Consensus 52 ~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 52 SVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLS----YKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp TCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGG----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred ceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCC----hHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 567776665443 23345555554 99999999999841 00011111234455349999999999998776
Q ss_pred CC-C----C--CCCceEEEcCCCCcc-----cccccccCCC-CCcEEeccCCCCCcccCC------CCCC-CCCCEEecc
Q 036657 343 FD-F----E--PENLIELNLPYSKVE-----QIWKGEKKAF-KLKYIDISHSQQLVRMLD------LSET-PNLERTNLL 402 (481)
Q Consensus 343 ~~-~----~--l~~L~~L~L~~~~i~-----~lp~~~~~L~-~L~~L~Ls~~~~l~~lp~------~~~l-~~L~~L~L~ 402 (481)
.. + . +.+|++|+|++|.+. .++..+..++ +|++|++++|. +...+. +... ++|++|+++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECC
Confidence 53 1 1 369999999999988 5566667776 99999999995 665542 3445 599999999
Q ss_pred CCCCCcc-----ccccccCC-CCCCEEeeeCCCCCccCCC-----CC-CCCCCcEEEeecCC--C-----CCccCCc---
Q 036657 403 NCRDLAC-----VRSSIENF-NNLSMLCFKGCESLRSFPR-----GI-HFVSPITIDFSFCV--N-----LTEFPQI--- 460 (481)
Q Consensus 403 ~c~~l~~-----lp~~i~~L-~~L~~L~l~~c~~l~~lp~-----~~-~l~~L~~L~l~~c~--~-----L~~lp~~--- 460 (481)
+|. +.. ++..+..+ ++|++|++++| .+...+. .+ .+++|++|++++|. . +..++..
T Consensus 205 ~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 205 ANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp TSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 964 554 67777764 59999999974 6666543 22 38999999999975 1 2223332
Q ss_pred ccccceEeeeCcCCccC
Q 036657 461 SGNIIELKLWYTAIEEV 477 (481)
Q Consensus 461 ~~~L~~L~L~~~~l~~l 477 (481)
..+|+.|++++|.+...
T Consensus 283 l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 283 IQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEEEECTTSCBCCGG
T ss_pred CCceEEEecCCCcCCCc
Confidence 34578999999998653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.5e-14 Score=127.06 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=48.6
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKG 366 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~ 366 (481)
.|.++++|+.|++++|. ...+| .+..++ +|++|++++|.++.+|..+. +++|++|++++|+++.+| .
T Consensus 43 ~~~~l~~L~~L~ls~n~---------l~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~ 110 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN---------IEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G 110 (198)
T ss_dssp HHHHTTTCSEEECSEEE---------ESCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H
T ss_pred HHhcCCCCCEEECCCCC---------Ccccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c
Confidence 45555555555555444 22233 444444 55555555555555544333 344555555555554444 3
Q ss_pred ccCCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLN 403 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~ 403 (481)
+..+++|++|++++|. +..+|. +..+++|++|++++
T Consensus 111 ~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecC
Confidence 4444555555555442 333332 44444455555544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-10 Score=99.84 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=70.6
Q ss_pred cccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEec
Q 036657 327 ELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNL 401 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L 401 (481)
+|++|+++++.++.+|.. |. +.+|++|++++|.++.+|.. +..+++|++|++++|. +..+|. ++.+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEEC
Confidence 777777777777777665 33 77777777777777777654 5677777777777773 666665 677777777777
Q ss_pred cCCCCCcccccc-ccCCCCCCEEeeeCC
Q 036657 402 LNCRDLACVRSS-IENFNNLSMLCFKGC 428 (481)
Q Consensus 402 ~~c~~l~~lp~~-i~~L~~L~~L~l~~c 428 (481)
+++ .+..+|.. +..+++|++|+++++
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 774 55666655 466777777777764
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=99.73 Aligned_cols=96 Identities=11% Similarity=0.209 Sum_probs=57.0
Q ss_pred cceeeccccCCCCCCCCCCCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 329 RYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 329 r~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
+.++++++.+..+|..+. .+|++|+|++|++..+ |..+..+++|++|+|++| .+..+|. +..+++|++|+|++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-C
Confidence 455566666666665543 5666666666666655 334566666666666666 3555654 45666666666665 3
Q ss_pred CCcccccc-ccCCCCCCEEeeeC
Q 036657 406 DLACVRSS-IENFNNLSMLCFKG 427 (481)
Q Consensus 406 ~l~~lp~~-i~~L~~L~~L~l~~ 427 (481)
.+..+|.. ++.+++|++|++++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCS
T ss_pred ccceeCHHHhccccCCCEEEeCC
Confidence 45555544 55666666666664
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-12 Score=117.66 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=106.9
Q ss_pred ecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCC
Q 036657 316 HLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETP 394 (481)
Q Consensus 316 ~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~ 394 (481)
.+|..+..++ +|++|++++|.++.+| .+. +.+|++|++++|.++.+|..+..+++|++|++++|. +..+|.++.++
T Consensus 39 ~l~~~~~~l~-~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLK-ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLV 115 (198)
T ss_dssp CCHHHHHHTT-TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHH
T ss_pred hhhHHHhcCC-CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCccccCC
Confidence 3444788888 9999999999999999 555 999999999999999999888888999999999994 88888888999
Q ss_pred CCCEEeccCCCCCccccc--cccCCCCCCEEeeeCCCCCccC-CCC----------C-CCCCCcEEEe
Q 036657 395 NLERTNLLNCRDLACVRS--SIENFNNLSMLCFKGCESLRSF-PRG----------I-HFVSPITIDF 448 (481)
Q Consensus 395 ~L~~L~L~~c~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~l-p~~----------~-~l~~L~~L~l 448 (481)
+|++|++++| .+..+|. .+..+++|++|+++++ .+... |.. + .+++|+.|+-
T Consensus 116 ~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 9999999995 5666654 6899999999999985 44433 321 3 3889999873
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.06 E-value=6.7e-10 Score=98.23 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=60.3
Q ss_pred ccceeeccccCCCCCCCCCCCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCC
Q 036657 328 LRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNC 404 (481)
Q Consensus 328 Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c 404 (481)
.+.++++++.++.+|..+ +.+|++|+|++|+++.+ |..+..+++|++|+|++|. +..+|. |..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCC-
Confidence 455666666666666554 36666667766666666 3346666667777776663 666654 56666666666666
Q ss_pred CCCcccccc-ccCCCCCCEEeeeC
Q 036657 405 RDLACVRSS-IENFNNLSMLCFKG 427 (481)
Q Consensus 405 ~~l~~lp~~-i~~L~~L~~L~l~~ 427 (481)
+.+..+|.. ++.+++|++|++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCC
Confidence 345555543 56666666666665
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-11 Score=126.39 Aligned_cols=177 Identities=16% Similarity=0.074 Sum_probs=109.1
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC------CCCC-CCCCceEEEcCCCCccc--
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML------PFDF-EPENLIELNLPYSKVEQ-- 362 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l------P~~~-~l~~L~~L~L~~~~i~~-- 362 (481)
+++|+.|++++|.+. ......++..+..++ +|++|++++|.+... +..+ .+.+|++|++++|.++.
T Consensus 198 ~~~L~~L~L~~n~l~----~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 198 PCQLEALKLESCGVT----SDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp CCCCCEEECTTSCCB----TTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred CCCceEEEccCCCCc----HHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 557777777776631 000112455555666 788888887766542 2122 26678888888887775
Q ss_pred ---ccccccCCCCCcEEeccCCCCCccc-----CC--CCCCCCCCEEeccCCCCCc----cccccccCCCCCCEEeeeCC
Q 036657 363 ---IWKGEKKAFKLKYIDISHSQQLVRM-----LD--LSETPNLERTNLLNCRDLA----CVRSSIENFNNLSMLCFKGC 428 (481)
Q Consensus 363 ---lp~~~~~L~~L~~L~Ls~~~~l~~l-----p~--~~~l~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~l~~c 428 (481)
++..+..+++|++|++++|. +... +. ....++|++|++++|.--. .++..+..+++|++|++++|
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 66667777888888888774 4422 11 1234678888888765322 24566677788888888865
Q ss_pred CCCccCC-----CCCC--CCCCcEEEeecCCCCC-----ccCCc---ccccceEeeeCcCCcc
Q 036657 429 ESLRSFP-----RGIH--FVSPITIDFSFCVNLT-----EFPQI---SGNIIELKLWYTAIEE 476 (481)
Q Consensus 429 ~~l~~lp-----~~~~--l~~L~~L~l~~c~~L~-----~lp~~---~~~L~~L~L~~~~l~~ 476 (481)
.+.... ..+. .++|++|++++|. +. .+|.. ..+|++|++++|.++.
T Consensus 352 -~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 352 -RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp -BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred -ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 444321 1111 5678888888874 55 45553 4567788888877753
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.01 E-value=7.3e-12 Score=128.65 Aligned_cols=182 Identities=16% Similarity=0.097 Sum_probs=109.9
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccc-cccccccceeeccccCCC-----CCCCCC-CCCceEEEcCCC
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLE-YLPEELRYLHWHEYSLKM-----LPFDFE-PENLIELNLPYS 358 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~~l~~-----lP~~~~-l~~L~~L~L~~~ 358 (481)
+..+..+++|+.|++++|.+. +.....+...+. ..+ +|++|++++|.+.. +|..+. +++|++|++++|
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~----~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDIN----EAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCH----HHHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHhhCCCCCEEECcCCCcc----hHHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 455667788888888877630 000001111111 133 78888888887765 344444 678888888888
Q ss_pred Ccccc-----ccc-ccCCCCCcEEeccCCCCCcc-----cCC-CCCCCCCCEEeccCCCCCcc----cccccc-CCCCCC
Q 036657 359 KVEQI-----WKG-EKKAFKLKYIDISHSQQLVR-----MLD-LSETPNLERTNLLNCRDLAC----VRSSIE-NFNNLS 421 (481)
Q Consensus 359 ~i~~l-----p~~-~~~L~~L~~L~Ls~~~~l~~-----lp~-~~~l~~L~~L~L~~c~~l~~----lp~~i~-~L~~L~ 421 (481)
.+... ... ...+++|++|++++| .+.. +|. +..+++|++|++++|.--.. +...+. ..++|+
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 76642 122 335778888888888 3655 454 66678888888887642211 222222 235788
Q ss_pred EEeeeCCCCCcc-----CCCCC-CCCCCcEEEeecCCCCCccC-C----c----ccccceEeeeCcCCc
Q 036657 422 MLCFKGCESLRS-----FPRGI-HFVSPITIDFSFCVNLTEFP-Q----I----SGNIIELKLWYTAIE 475 (481)
Q Consensus 422 ~L~l~~c~~l~~-----lp~~~-~l~~L~~L~l~~c~~L~~lp-~----~----~~~L~~L~L~~~~l~ 475 (481)
+|++++|. +.. +|..+ .+++|++|++++|. +.... . . ..+|++|+|++|.++
T Consensus 317 ~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 317 SLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp EEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred eeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 88888763 433 23333 26888899988874 54421 1 1 347889999988887
|
| >1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-11 Score=105.07 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=48.7
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHH-hHhhCCCeEEeEEee-cCCccc
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILD-CKKMNGQIVIPVFYQ-VDPSDV 57 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~-~~~~~~~~v~pvfy~-v~p~~v 57 (481)
++.+||++|++.|||+|+||+.|.||+.|+..++. +.+.++++|+||||+ |++.++
T Consensus 53 ~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 53 NIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 58899999999999999999999999999999885 456678889999995 666444
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=96.30 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=85.3
Q ss_pred cEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc-ccCCCC
Q 036657 296 RLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG-EKKAFK 372 (481)
Q Consensus 296 r~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~ 372 (481)
+.++++++. ...+|..+. .+|++|++++|.++.+|+ .|. +.+|++|+|++|+++.+|.+ +..+++
T Consensus 15 ~~l~~~~n~---------l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIR---------LASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSC---------CSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCC---------CCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 577888776 456776553 499999999999999855 465 99999999999999999887 588999
Q ss_pred CcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccccc
Q 036657 373 LKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSSI 414 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~i 414 (481)
|++|+|++|. +..+|. +..+++|++|+++++ .+...+..+
T Consensus 83 L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~~~ 124 (174)
T 2r9u_A 83 LTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNN-PWDCECRDI 124 (174)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CBCTTBGGG
T ss_pred hhEEECCCCc-cceeCHHHhccccCCCEEEeCCC-CcccccccH
Confidence 9999999994 888886 889999999999984 455444433
|
| >2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A | Back alignment and structure |
|---|
Probab=98.97 E-value=7.2e-11 Score=103.02 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=47.0
Q ss_pred hHHHHhh-hCCEEEEEEcCCCcchhhHHHHHHHHHHhH-hhCCCeEEeEEeecCC
Q 036657 2 AISNAIE-TSDISIIIFSKDYASSKWCLNELVKILDCK-KMNGQIVIPVFYQVDP 54 (481)
Q Consensus 2 ~~~~ai~-~s~~~ivv~s~~ya~s~~cl~el~~i~~~~-~~~~~~v~pvfy~v~p 54 (481)
++.+||+ .|+..|||+|+||+.|.||+.|+..++++. +.++++|+||||+.-+
T Consensus 63 ~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 63 IASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp CCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 5789999 699999999999999999999999999985 4556789999998643
|
| >2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.1e-11 Score=104.77 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=43.3
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHh-HhhCCCeEEeEEee-cCCc
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDC-KKMNGQIVIPVFYQ-VDPS 55 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~-~~~~~~~v~pvfy~-v~p~ 55 (481)
++.+||++||..|||+|+||++|.||+.|+..++.+ .+.++++|+||||+ +++.
T Consensus 83 ~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~ 138 (178)
T 2j67_A 83 NIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFY 138 (178)
T ss_dssp HHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCCCGG
T ss_pred HHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChH
Confidence 578999999999999999999999999999999975 45677899999997 4443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-09 Score=92.37 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=82.0
Q ss_pred CcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCC-CCC-CCCceEEEcCCCCccccccc-ccCCC
Q 036657 295 LRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPF-DFE-PENLIELNLPYSKVEQIWKG-EKKAF 371 (481)
Q Consensus 295 Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~-~~~-l~~L~~L~L~~~~i~~lp~~-~~~L~ 371 (481)
.+.++++++. ...+|..+ +.+|++|++++|.++.+++ .|. +.+|++|+|++|+++.+|.+ +..++
T Consensus 11 ~~~l~~s~n~---------l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGKS---------LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTSC---------CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEEEeCCCC---------cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 4678888777 45577655 3499999999999999855 465 99999999999999999876 58999
Q ss_pred CCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 372 KLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
+|++|+|++|. +..+|. +..+++|++|+++++.
T Consensus 79 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 79 QLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99999999994 888876 8899999999999853
|
| >1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.7e-10 Score=97.71 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=49.0
Q ss_pred hHHHHhhhCCEEEEEEcCCCc-chhhHHHHHHHHHHhH-hhCCCeEEeEEeecCCcc
Q 036657 2 AISNAIETSDISIIIFSKDYA-SSKWCLNELVKILDCK-KMNGQIVIPVFYQVDPSD 56 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya-~s~~cl~el~~i~~~~-~~~~~~v~pvfy~v~p~~ 56 (481)
++.+||++||..|||+|+||+ .|.||+.|+..++.|. +.++++|+||||.-.|..
T Consensus 60 ~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~ 116 (159)
T 1t3g_A 60 DVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGI 116 (159)
T ss_dssp HHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred HHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence 578999999999999999996 9999999999999985 667889999999866543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.4e-10 Score=119.15 Aligned_cols=147 Identities=12% Similarity=-0.000 Sum_probs=73.8
Q ss_pred cccceeeccccCCC-----CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEecc---------------------
Q 036657 327 ELRYLHWHEYSLKM-----LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDIS--------------------- 379 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~-----lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls--------------------- 379 (481)
+|++|+++++.+.. ++..+. +++|++|++++|.+..+|..+..+++|++|+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 55555555554432 121111 455555555555555555444555555555554
Q ss_pred ------CCCCCcccCC-CCCCCCCCEEeccCCCCCcc--ccccccCCCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEee
Q 036657 380 ------HSQQLVRMLD-LSETPNLERTNLLNCRDLAC--VRSSIENFNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFS 449 (481)
Q Consensus 380 ------~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~ 449 (481)
++ ....+|. +..+++|++|++++|. +.. ++..++.+++|++|++.++..-..++... .+++|++|+++
T Consensus 273 ~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 273 CRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 33 2333343 3445556666666554 211 11224555666666665321111122211 26778888888
Q ss_pred c----------CCCCCc--cCC---cccccceEeeeCcCCc
Q 036657 450 F----------CVNLTE--FPQ---ISGNIIELKLWYTAIE 475 (481)
Q Consensus 450 ~----------c~~L~~--lp~---~~~~L~~L~L~~~~l~ 475 (481)
+ |..+.. ++. ..++|++|+++++.++
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 4 666653 222 3567888888877775
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-09 Score=116.19 Aligned_cols=85 Identities=15% Similarity=0.029 Sum_probs=39.8
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC----CCCCCCC-CCCceEEEcCCCCccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK----MLPFDFE-PENLIELNLPYSKVEQ 362 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~----~lP~~~~-l~~L~~L~L~~~~i~~ 362 (481)
.+.++++|+.|++.+|. ...+|..+..++ +|+.|++.++... ..+..+. +.+|+.|+++++....
T Consensus 215 ~~~~~~~L~~L~L~~~~---------~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 284 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFE---------ILELVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284 (592)
T ss_dssp HHHHCTTCCEEECSSCB---------GGGGHHHHHHCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT
T ss_pred HHhhCCCCcEEeccCcc---------HHHHHHHHhhhh-HHHhhcccccccccchHHHHHHhhccccccccCccccchhH
Confidence 34456666666666554 222444444444 5555555432111 1112222 4455555555544444
Q ss_pred ccccccCCCCCcEEeccCCC
Q 036657 363 IWKGEKKAFKLKYIDISHSQ 382 (481)
Q Consensus 363 lp~~~~~L~~L~~L~Ls~~~ 382 (481)
+|..+..+++|++|++++|.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC
T ss_pred HHHHHhhcCCCcEEecCCCc
Confidence 45445555555555555553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-08 Score=98.92 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=86.7
Q ss_pred ccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCC-----------------CC
Q 036657 324 LPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHS-----------------QQ 383 (481)
Q Consensus 324 l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~-----------------~~ 383 (481)
++ +|+.|.+.. .++.++.. |. +.+|++|+++++.+..++.. +....++..+.+... ..
T Consensus 100 ~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 55 778888877 77777765 44 77888888887776655443 444444544443331 00
Q ss_pred Cc---------ccCC--------------------C---------CCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEe
Q 036657 384 LV---------RMLD--------------------L---------SETPNLERTNLLNCRDLACVRSS-IENFNNLSMLC 424 (481)
Q Consensus 384 l~---------~lp~--------------------~---------~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~ 424 (481)
+. .+|. + ..+++|+.|++.+ +.+..+|.. |.++++|+.|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhhCCCCCCEEE
Confidence 00 0000 0 0156677777765 335566543 66677777777
Q ss_pred eeCCCCCccCCCCC--CCCCCc-EEEeecCCCCCccCC----cccccceEeeeCcCCccCCC
Q 036657 425 FKGCESLRSFPRGI--HFVSPI-TIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 425 l~~c~~l~~lp~~~--~l~~L~-~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~ 479 (481)
+.+ +++.++... ++++|+ .+.+.+ +++.++. ...+|+.|++++++++.++.
T Consensus 257 l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 257 LPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred CCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 764 366666543 366777 777766 4666664 23456777777777766665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.9e-10 Score=118.09 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=97.8
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCC-----CCCCC-CCCCceEEEcCCCC--cc-
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKM-----LPFDF-EPENLIELNLPYSK--VE- 361 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lP~~~-~l~~L~~L~L~~~~--i~- 361 (481)
.+++|+.|++.+|.. .....++.....++ +|++|++++|.+.. ++... .+.+|++|+++++. +.
T Consensus 128 ~~~~L~~L~L~~~~~------~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEG------FSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HCTTCCEEEEESCEE------EEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred hCCCCcEEeCCCcCC------CCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 577888888887631 00111333334566 88888888776443 22222 26688888888775 21
Q ss_pred -cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCC-------------------CCCcc-----------
Q 036657 362 -QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNC-------------------RDLAC----------- 409 (481)
Q Consensus 362 -~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c-------------------~~l~~----------- 409 (481)
.++.-...+++|++|++++|..+..+|. +..+++|++|.+.+| .++..
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~ 280 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh
Confidence 2222234578888888888765666665 667777777765433 22222
Q ss_pred ccccccCCCCCCEEeeeCCCCCcc--CCCCC-CCCCCcEEEeecCCCCCccCC---cccccceEeee
Q 036657 410 VRSSIENFNNLSMLCFKGCESLRS--FPRGI-HFVSPITIDFSFCVNLTEFPQ---ISGNIIELKLW 470 (481)
Q Consensus 410 lp~~i~~L~~L~~L~l~~c~~l~~--lp~~~-~l~~L~~L~l~~c~~L~~lp~---~~~~L~~L~L~ 470 (481)
+|..+..+++|++|++++|. +.. ++..+ ++++|++|++++|..-..++. ...+|++|++.
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 22223355677777777665 432 11111 367777777777621111221 24567788773
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=96.09 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=116.4
Q ss_pred ccChHhhcc--------CCCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCC-CC-CCCce
Q 036657 283 HLNPQAFAN--------MSNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLI 351 (481)
Q Consensus 283 ~~~~~~f~~--------l~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~ 351 (481)
.+...+|.+ +++|+.|.+.+ . ...+++ .|..++ +|+.|++.++.+..+++. |. ..++.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~---------i~~I~~~aF~~~~-~L~~l~l~~n~i~~i~~~aF~~~~~l~ 151 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-K---------IKNIEDAAFKGCD-NLKICQIRKKTAPNLLPEALADSVTAI 151 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-T---------CCEECTTTTTTCT-TCCEEEBCCSSCCEECTTSSCTTTCEE
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-c---------ccchhHHHhhcCc-ccceEEcCCCCccccchhhhcCCCceE
Confidence 455667777 88888888876 3 233443 566666 788888887777777665 33 55565
Q ss_pred EEEcCCCCc-------c--------------------ccccc---------------------------c-cCCCCCcEE
Q 036657 352 ELNLPYSKV-------E--------------------QIWKG---------------------------E-KKAFKLKYI 376 (481)
Q Consensus 352 ~L~L~~~~i-------~--------------------~lp~~---------------------------~-~~L~~L~~L 376 (481)
++.+..+.. . .++.. + ..+++|+.|
T Consensus 152 ~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 152 FIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp EECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred EecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence 555444110 0 00000 0 127899999
Q ss_pred eccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCC-EEeeeCCCCCccCCCCC--CCCCCcEEEeec
Q 036657 377 DISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLS-MLCFKGCESLRSFPRGI--HFVSPITIDFSF 450 (481)
Q Consensus 377 ~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~-~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~ 450 (481)
++++| .+..+|+ |.++++|+.|++.+ ++..++.. |.++++|+ .+++.+ +++.++... ++++|+.+++++
T Consensus 232 ~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 232 DISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp ECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS
T ss_pred ECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC
Confidence 99988 4899997 89999999999987 37777754 78899999 999985 788887644 499999999977
Q ss_pred CCCCCccCCc----ccccceEe
Q 036657 451 CVNLTEFPQI----SGNIIELK 468 (481)
Q Consensus 451 c~~L~~lp~~----~~~L~~L~ 468 (481)
+++..++.. ..+|+.++
T Consensus 307 -n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 307 -DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -SCCCEECTTTTCTTCCCCEEE
T ss_pred -CccCccchhhhcCCcchhhhc
Confidence 458888872 34556655
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.7e-10 Score=117.69 Aligned_cols=203 Identities=14% Similarity=0.035 Sum_probs=125.0
Q ss_pred cceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC--
Q 036657 267 DKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-- 344 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-- 344 (481)
..++.+.+.....-........+.++++|+.|++.+|.+. +.....++.....++ +|++|+++++. ..++..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~----~~~~~~l~~~~~~~~-~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD----DVSGHWLSHFPDTYT-SLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE----CCCGGGGGGSCTTCC-CCCEEECTTCC-SCCCHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC----CcchHHHHHHhhcCC-cCcEEEecccC-CcCCHHHH
Confidence 4667776653311000012344558999999999987631 000112333334566 89999999886 222211
Q ss_pred ---CC-CCCceEEEcCCC-CcccccccccCCCCCcEEeccCC-------------------CCCccc-----------CC
Q 036657 345 ---FE-PENLIELNLPYS-KVEQIWKGEKKAFKLKYIDISHS-------------------QQLVRM-----------LD 389 (481)
Q Consensus 345 ---~~-l~~L~~L~L~~~-~i~~lp~~~~~L~~L~~L~Ls~~-------------------~~l~~l-----------p~ 389 (481)
+. +++|++|++++| .+..+|..+..+++|++|+++.+ ..++.+ |.
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 11 589999999988 66677777888899999986544 222222 22
Q ss_pred -CCCCCCCCEEeccCCCCCcc--ccccccCCCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEeec--------CCCCCc-
Q 036657 390 -LSETPNLERTNLLNCRDLAC--VRSSIENFNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFSF--------CVNLTE- 456 (481)
Q Consensus 390 -~~~l~~L~~L~L~~c~~l~~--lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~--------c~~L~~- 456 (481)
+..+++|++|++++|. +.. ++..+.++++|++|++.+|..-..++... .+++|++|++++ |..+..
T Consensus 284 ~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 1256899999999987 432 23336688999999999872212222222 378999999954 344432
Q ss_pred ----cCCcccccceEeeeCcCCcc
Q 036657 457 ----FPQISGNIIELKLWYTAIEE 476 (481)
Q Consensus 457 ----lp~~~~~L~~L~L~~~~l~~ 476 (481)
+....++|++|.+.++.++.
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HHHHHHHhchhHHHHHHhcCCcCH
Confidence 11235688999888888753
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-07 Score=92.95 Aligned_cols=176 Identities=16% Similarity=0.156 Sum_probs=98.7
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVE 361 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~ 361 (481)
+...+|.++.+|+.+.+.+|. ...++....... +|+.+.+..+ ++.++.. |. +.+|+.+++..+ ++
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~---------l~~I~~~aF~~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTK---------ITKLPASTFVYA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSC---------CSEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC
T ss_pred ehHHHhhCcccCCeeecCCCc---------ceEechhhEeec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc
Confidence 445667777777777776655 334444333333 6666666532 5555554 33 566666666653 44
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCC----Ccccc-ccccCCCCCCEEeeeCCCCCcc
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRD----LACVR-SSIENFNNLSMLCFKGCESLRS 433 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~----l~~lp-~~i~~L~~L~~L~l~~c~~l~~ 433 (481)
.++.. +.+ .+|+.+.+.. .++.++. |.++++|+.+.+.++.. ...++ ..|.++++|+.+.+. ++++.
T Consensus 239 ~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~ 313 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRI 313 (401)
T ss_dssp EECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCE
T ss_pred Ccccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC--CceEE
Confidence 44443 233 5566666643 2556654 66677777777665221 11233 236666777777776 34666
Q ss_pred CCCCC--CCCCCcEEEeecCCCCCccCC----cccccceEeeeCcCCccCCC
Q 036657 434 FPRGI--HFVSPITIDFSFCVNLTEFPQ----ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 434 lp~~~--~l~~L~~L~l~~c~~L~~lp~----~~~~L~~L~L~~~~l~~lP~ 479 (481)
++... ++++|+.+.|.. ++..++. .. +|+.+++.+|.+..++.
T Consensus 314 I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp ECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred EhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 66543 367777777744 3555554 12 66777777766655543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-08 Score=96.12 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=52.6
Q ss_pred eecCCccccccccccceeecc-ccCCCCCCC-CC-CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC-
Q 036657 315 LHLDQGLEYLPEELRYLHWHE-YSLKMLPFD-FE-PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD- 389 (481)
Q Consensus 315 ~~l~~~l~~l~~~Lr~L~l~~-~~l~~lP~~-~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~- 389 (481)
..+|. +..+. +|++|++++ |.+..+|+. |. +.+|++|+|++|+++.++. .+..|++|++|+|++|. +..+|.
T Consensus 22 ~~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 22 DSLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp TTTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 34666 66555 667777764 666666643 44 6667777777776666544 35666677777776663 666664
Q ss_pred -CCCCCCCCEEeccCC
Q 036657 390 -LSETPNLERTNLLNC 404 (481)
Q Consensus 390 -~~~l~~L~~L~L~~c 404 (481)
+..++ |+.|+|.++
T Consensus 99 ~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGN 113 (347)
T ss_dssp TTCSCC-CCEEECCSS
T ss_pred HcccCC-ceEEEeeCC
Confidence 33333 666666653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-07 Score=91.54 Aligned_cols=99 Identities=23% Similarity=0.215 Sum_probs=78.3
Q ss_pred ceeeccc-cCCCCCCCCC-CCCceEEEcCC-CCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 330 YLHWHEY-SLKMLPFDFE-PENLIELNLPY-SKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 330 ~L~l~~~-~l~~lP~~~~-l~~L~~L~L~~-~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
.++.+++ .++.+|. +. +.+|++|+|++ |.+..+|. .+..|++|++|+|++|. +..+|. |+++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 4567777 7888998 76 88899999996 89998874 58889999999999984 777765 78899999999998
Q ss_pred CCCCccccccccCCCCCCEEeeeCCCCCc
Q 036657 404 CRDLACVRSSIENFNNLSMLCFKGCESLR 432 (481)
Q Consensus 404 c~~l~~lp~~i~~L~~L~~L~l~~c~~l~ 432 (481)
+.+..+|..+....+|+.|++.+ +.+.
T Consensus 90 -N~l~~~~~~~~~~~~L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 90 -NALESLSWKTVQGLSLQELVLSG-NPLH 116 (347)
T ss_dssp -SCCSCCCSTTTCSCCCCEEECCS-SCCC
T ss_pred -CccceeCHHHcccCCceEEEeeC-CCcc
Confidence 56778887654444499999886 4444
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.5e-06 Score=85.84 Aligned_cols=174 Identities=15% Similarity=0.162 Sum_probs=106.8
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCC-CCCCCceEEEcCCCCcc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFD-FEPENLIELNLPYSKVE 361 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~l~~L~~L~L~~~~i~ 361 (481)
+...+|.++ +|+.+.+.++ ...++ ..|..++ +|+.+++.++.++.+|.. |...+|+.+.+..+ ++
T Consensus 149 I~~~aF~~~-~L~~i~lp~~----------l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~ 215 (401)
T 4fdw_A 149 IGDMAFFNS-TVQEIVFPST----------LEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK 215 (401)
T ss_dssp ECTTTTTTC-CCCEEECCTT----------CCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC
T ss_pred ECHHhcCCC-CceEEEeCCC----------ccEehHHHhhCcc-cCCeeecCCCcceEechhhEeecccCEEEeCCc-hh
Confidence 344455553 4555555432 12232 3455555 777777777777777765 44667777777643 66
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCc-----
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLR----- 432 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~----- 432 (481)
.++.. +.++++|+.+++..+ +..++. |.+ .+|+.+.+. .++..++. .|.++++|+.+.+.+. .+.
T Consensus 216 ~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~ 289 (401)
T 4fdw_A 216 EIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP--NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEA 289 (401)
T ss_dssp EECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE--TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTC
T ss_pred eehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC--CCccEEChhHhhCCCCCCEEEeCCc-cccCCccc
Confidence 66543 666777777777653 666665 555 677777775 34556643 4777888888888752 222
Q ss_pred cCCCCC--CCCCCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCC
Q 036657 433 SFPRGI--HFVSPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 433 ~lp~~~--~l~~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~ 479 (481)
.++... ++++|+.+.+.+ .++.++.. ..+|+.++|.. +++.++.
T Consensus 290 ~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~ 339 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA-NVTQINF 339 (401)
T ss_dssp EECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT-TCCEECT
T ss_pred EECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc-cccEEcH
Confidence 355433 488888888874 47777762 35678888854 3655543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-07 Score=92.59 Aligned_cols=186 Identities=10% Similarity=0.067 Sum_probs=111.2
Q ss_pred CCCCcceeeeeecCCcccc-c-----ccChHhhccCCCCcEEEEeCCCCCCCccc--CcceecCCccccccccccceeec
Q 036657 263 NKGTDKVEGIFLDLSKIND-I-----HLNPQAFANMSNLRLLKFYMPKHNDIPIM--SSKLHLDQGLEYLPEELRYLHWH 334 (481)
Q Consensus 263 ~~~~~~v~~i~l~~~~~~~-~-----~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~Lr~L~l~ 334 (481)
......++.+.+....... . .....+..++++|+.|.+.+..... +.. .....++..+..+| +|+.|+++
T Consensus 103 ~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~-~~is~~~~~~L~~ll~~~P-~L~~L~L~ 180 (362)
T 2ra8_A 103 DKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEE-QEISWIEQVDLSPVLDAMP-LLNNLKIK 180 (362)
T ss_dssp CTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTT-CCGGGCBCCBCHHHHHTCT-TCCEEEEE
T ss_pred CCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhh-cccccccccCHHHHHhcCC-CCcEEEEe
Confidence 3345567777776433210 0 0012235578899999997643100 000 00112333445567 99999998
Q ss_pred cccCCCCCCCCCCCCceEEEcCCCCcccc-cccc--cCCCCCcEEeccCCCC-------CcccCC-C--CCCCCCCEEec
Q 036657 335 EYSLKMLPFDFEPENLIELNLPYSKVEQI-WKGE--KKAFKLKYIDISHSQQ-------LVRMLD-L--SETPNLERTNL 401 (481)
Q Consensus 335 ~~~l~~lP~~~~l~~L~~L~L~~~~i~~l-p~~~--~~L~~L~~L~Ls~~~~-------l~~lp~-~--~~l~~L~~L~L 401 (481)
++.-..+|. +.+.+|+.|+|..+.+..- ...+ ..+++|++|+|+.+.+ +..+.. + ..+++|++|.+
T Consensus 181 g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 181 GTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp CCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred CCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 874335555 4578999999988876521 1222 3789999999864211 222222 2 35789999999
Q ss_pred cCCCCCccccccc---cCCCCCCEEeeeCCCCCcc-----CCCCC-CCCCCcEEEeecCC
Q 036657 402 LNCRDLACVRSSI---ENFNNLSMLCFKGCESLRS-----FPRGI-HFVSPITIDFSFCV 452 (481)
Q Consensus 402 ~~c~~l~~lp~~i---~~L~~L~~L~l~~c~~l~~-----lp~~~-~l~~L~~L~l~~c~ 452 (481)
.+|......+..+ +.+++|++|+|+. +.+.. ++..+ ++++|+.|++++|.
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 8876443333222 3578899999984 56654 44443 37899999998874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-08 Score=98.82 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=59.0
Q ss_pred cccceeeccccCCCC--CCCCC-CCCceEEEcCCCCcccc-----cccc-cCCCCCcEEeccCCCCCcc-----cCC-CC
Q 036657 327 ELRYLHWHEYSLKML--PFDFE-PENLIELNLPYSKVEQI-----WKGE-KKAFKLKYIDISHSQQLVR-----MLD-LS 391 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~l--P~~~~-l~~L~~L~L~~~~i~~l-----p~~~-~~L~~L~~L~Ls~~~~l~~-----lp~-~~ 391 (481)
+|+.|++++|.+..- ...+. +.+|++|+|++|.+... ...+ ...++|++|+|++|. +.. ++. +.
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLA 180 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHh
Confidence 556666665554321 11111 44566666666655422 1112 234566666666663 433 222 34
Q ss_pred CCCCCCEEeccCCCCCc-----cccccccCCCCCCEEeeeCCCCCccC-----CCCC-CCCCCcEEEeecCC
Q 036657 392 ETPNLERTNLLNCRDLA-----CVRSSIENFNNLSMLCFKGCESLRSF-----PRGI-HFVSPITIDFSFCV 452 (481)
Q Consensus 392 ~l~~L~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~l~~c~~l~~l-----p~~~-~l~~L~~L~l~~c~ 452 (481)
..++|++|+|++|. +. .++..+...++|+.|++++| .+... +..+ ..++|++|+|++|.
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 55566666666643 22 22344555566666666653 33321 1111 14566666666653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.23 E-value=9.4e-07 Score=77.72 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCCCCC-CCCCceEEEcCCCCcccc-cccccCCCCCcEEeccCCCCCcccC--CCCCC----CCCCEEeccCCCCCccc-
Q 036657 340 MLPFDF-EPENLIELNLPYSKVEQI-WKGEKKAFKLKYIDISHSQQLVRML--DLSET----PNLERTNLLNCRDLACV- 410 (481)
Q Consensus 340 ~lP~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~lp--~~~~l----~~L~~L~L~~c~~l~~l- 410 (481)
.+|... .-.+|++||+++|.++.. ...+..+++|++|+|++|..++.-- .++.+ ++|++|+|++|..++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 344433 245688888888876632 2335667777777777776554321 13333 35667777766655431
Q ss_pred cccccCCCCCCEEeeeCCCCCcc
Q 036657 411 RSSIENFNNLSMLCFKGCESLRS 433 (481)
Q Consensus 411 p~~i~~L~~L~~L~l~~c~~l~~ 433 (481)
-..+.++++|++|++++|+.++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 11244566666666666655543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.07 E-value=2.3e-06 Score=75.19 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=69.2
Q ss_pred cccccccCCCCCcEEeccCCCCCccc--CCCCCCCCCCEEeccCCCCCcccc-ccccCC----CCCCEEeeeCCCCCccC
Q 036657 362 QIWKGEKKAFKLKYIDISHSQQLVRM--LDLSETPNLERTNLLNCRDLACVR-SSIENF----NNLSMLCFKGCESLRSF 434 (481)
Q Consensus 362 ~lp~~~~~L~~L~~L~Ls~~~~l~~l--p~~~~l~~L~~L~L~~c~~l~~lp-~~i~~L----~~L~~L~l~~c~~l~~l 434 (481)
.+|.....-.+|+.||+++|. ++.. ..+.++++|++|+|++|..+..-- ..+..+ ++|++|++++|.+++.-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 456554444689999999995 6543 337899999999999998765421 224443 47999999999988652
Q ss_pred --CCCCCCCCCcEEEeecCCCCCc
Q 036657 435 --PRGIHFVSPITIDFSFCVNLTE 456 (481)
Q Consensus 435 --p~~~~l~~L~~L~l~~c~~L~~ 456 (481)
....++++|++|++++|+.++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 1112489999999999998875
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-07 Score=91.17 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=93.2
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-----C--CCCCceEEEcCCCCccc--
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-----F--EPENLIELNLPYSKVEQ-- 362 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-----~--~l~~L~~L~L~~~~i~~-- 362 (481)
.++|+.|++++|.+. ...+..-...++ +|+.|++++|.+...... + ...+|++|+|++|.++.
T Consensus 100 ~~~L~~L~Ls~n~l~-------~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 100 RHALDEVNLASCQLD-------PAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp SSCEEEEECTTCCCC-------HHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred CCCceEEEecCCCCC-------HHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 379999999988741 111111122344 899999999987643211 1 24689999999999864
Q ss_pred ---ccccccCCCCCcEEeccCCCCCccc-----CC-CCCCCCCCEEeccCCCCCc----cccccccCCCCCCEEeeeCCC
Q 036657 363 ---IWKGEKKAFKLKYIDISHSQQLVRM-----LD-LSETPNLERTNLLNCRDLA----CVRSSIENFNNLSMLCFKGCE 429 (481)
Q Consensus 363 ---lp~~~~~L~~L~~L~Ls~~~~l~~l-----p~-~~~l~~L~~L~L~~c~~l~----~lp~~i~~L~~L~~L~l~~c~ 429 (481)
++..+...++|++|+|++|. +... +. +...++|++|+|++|.--. .++..+...++|++|++++|
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N- 249 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN- 249 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-
T ss_pred HHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-
Confidence 55667889999999999995 6543 33 6677899999999975322 34555667899999999975
Q ss_pred CCcc
Q 036657 430 SLRS 433 (481)
Q Consensus 430 ~l~~ 433 (481)
.+..
T Consensus 250 ~i~~ 253 (372)
T 3un9_A 250 ELSS 253 (372)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 4543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.9e-05 Score=78.23 Aligned_cols=179 Identities=18% Similarity=0.169 Sum_probs=107.7
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCC----------CCCCCCC-CCCceEEEcCCCCcc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLK----------MLPFDFE-PENLIELNLPYSKVE 361 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~----------~lP~~~~-l~~L~~L~L~~~~i~ 361 (481)
..++.|.+..+.+...........+...+..++ +|+.|.+.+.... .++..+. +++|+.|+|+++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~-~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFA-HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHT-TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcc-hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 356778777544210000000112344566677 9999988654322 1222222 679999999987323
Q ss_pred cccccccCCCCCcEEeccCCCCCcccC--CC--CCCCCCCEEeccCCC-------CCccccccc--cCCCCCCEEeeeCC
Q 036657 362 QIWKGEKKAFKLKYIDISHSQQLVRML--DL--SETPNLERTNLLNCR-------DLACVRSSI--ENFNNLSMLCFKGC 428 (481)
Q Consensus 362 ~lp~~~~~L~~L~~L~Ls~~~~l~~lp--~~--~~l~~L~~L~L~~c~-------~l~~lp~~i--~~L~~L~~L~l~~c 428 (481)
.++. + .+++|++|++..|. +..-. .+ ..+|+|++|+|+.+. .+..+...+ +.+++|++|++.+|
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 4544 4 38999999998774 32211 13 378999999986321 122222223 35799999999986
Q ss_pred CCCccCC----CCCCCCCCcEEEeecCCCCCc-----cCCc---ccccceEeeeCcCCcc
Q 036657 429 ESLRSFP----RGIHFVSPITIDFSFCVNLTE-----FPQI---SGNIIELKLWYTAIEE 476 (481)
Q Consensus 429 ~~l~~lp----~~~~l~~L~~L~l~~c~~L~~-----lp~~---~~~L~~L~L~~~~l~~ 476 (481)
.-....+ ....+++|++|+|+.| .+.. ++.. +.+|+.|+|++|.|++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 4322111 1113789999999875 4665 4433 4678999999988753
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.68 E-value=5.6e-06 Score=78.12 Aligned_cols=78 Identities=24% Similarity=0.183 Sum_probs=53.7
Q ss_pred CCCceEEEcCCCCccccc---ccccCCCCCcEEeccCCCCCcccCCCCCCC--CCCEEeccCCCCCcccc-------ccc
Q 036657 347 PENLIELNLPYSKVEQIW---KGEKKAFKLKYIDISHSQQLVRMLDLSETP--NLERTNLLNCRDLACVR-------SSI 414 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~--~L~~L~L~~c~~l~~lp-------~~i 414 (481)
+.+|++|+|++|++..++ ..+..+++|+.|+|++|. +..+.++..+. +|++|+|+++.-...+| ..+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 568888888888877654 445678888888888884 66665444333 78888888865433343 225
Q ss_pred cCCCCCCEEee
Q 036657 415 ENFNNLSMLCF 425 (481)
Q Consensus 415 ~~L~~L~~L~l 425 (481)
..+++|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 67778877763
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=4e-05 Score=68.19 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=14.8
Q ss_pred hHhhccCCCCcEEEEeCC-CC
Q 036657 286 PQAFANMSNLRLLKFYMP-KH 305 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~-~~ 305 (481)
...+...++|+.|++++| .+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i 49 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNI 49 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTC
T ss_pred HHHHhcCCCCCEEEecCCCCC
Confidence 455677888888888877 53
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00023 Score=66.98 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=22.1
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCC
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKML 341 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l 341 (481)
.++++|+.|++++|.+. ....+|..+..++ +|++|++++|.++.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~------~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY------RLDDMSSIVQKAP-NLKILNLSGNELKSE 211 (267)
T ss_dssp HHCTTCCEEECTTSCCC------CCGGGTTHHHHST-TCCEEECTTSCCCSG
T ss_pred hhCCCCCEEECCCCCCC------CCccchhHHhhCC-CCCEEECCCCccCCc
Confidence 45667777777766631 0012333334444 555555555544443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00018 Score=63.93 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=54.2
Q ss_pred CCceEEEcCCC-Ccc-----cccccccCCCCCcEEeccCCCCCcc-----cCC-CCCCCCCCEEeccCCCCCc----ccc
Q 036657 348 ENLIELNLPYS-KVE-----QIWKGEKKAFKLKYIDISHSQQLVR-----MLD-LSETPNLERTNLLNCRDLA----CVR 411 (481)
Q Consensus 348 ~~L~~L~L~~~-~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~-----lp~-~~~l~~L~~L~L~~c~~l~----~lp 411 (481)
.+|++|+|++| .+. .+...+...++|++|+|++|. +.. +.. +...++|++|+|++|.--. .+.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 45666666665 553 234445556666666666663 332 111 3344566677776643211 134
Q ss_pred ccccCCCCCCEEee--eCCCCCcc-----CCCCC-CCCCCcEEEeecCC
Q 036657 412 SSIENFNNLSMLCF--KGCESLRS-----FPRGI-HFVSPITIDFSFCV 452 (481)
Q Consensus 412 ~~i~~L~~L~~L~l--~~c~~l~~-----lp~~~-~l~~L~~L~l~~c~ 452 (481)
..+...++|++|++ ++ +.+.. +...+ ..++|++|++++|.
T Consensus 115 ~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 45566667777777 43 34432 11112 14667777777653
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.034 Score=55.11 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=33.5
Q ss_pred cCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVS 442 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~ 442 (481)
..+.+|+.+.+..+ +..++. |.++++|+.+.+. ..+..++.. |.++.+|+.+.+.. +++.++... ++++
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eecccccEEecccc--cceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 34445555555432 233333 4445555555553 233334332 44455555555542 344444322 2455
Q ss_pred CcEEEe
Q 036657 443 PITIDF 448 (481)
Q Consensus 443 L~~L~l 448 (481)
|+.+.|
T Consensus 336 L~~i~i 341 (394)
T 4gt6_A 336 LERIAI 341 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 555555
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.017 Score=56.93 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=52.9
Q ss_pred CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCE
Q 036657 347 PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSM 422 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~ 422 (481)
..+|+.+.+..+ ++.+.. .+..+.+|+.+.+..+ +..++. |.++++|+.+.+.+ +.+..++. .+.++.+|+.
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccc-cccceehhhhhcCCCCCCE
Confidence 455666666544 444433 2455666666666543 555655 66667777776654 33444443 3556666777
Q ss_pred EeeeCCCCCccCCCCC--CCCCCcEEEe
Q 036657 423 LCFKGCESLRSFPRGI--HFVSPITIDF 448 (481)
Q Consensus 423 L~l~~c~~l~~lp~~~--~l~~L~~L~l 448 (481)
+.+. ++++.++... ++++|+.+.+
T Consensus 315 i~lp--~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLP--TALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECC--TTCCEECTTTTTTCTTCCCCCC
T ss_pred EEcC--ccccEEHHHHhhCCCCCCEEEE
Confidence 6665 2455555432 3555555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.03 Score=55.57 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=50.6
Q ss_pred CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCCc----cc
Q 036657 390 LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQI----SG 462 (481)
Q Consensus 390 ~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~~----~~ 462 (481)
+..+.+|+.+.+.+ ++..++. .+.++++|+.+++. ++++.++... ++++|+.+.+.. .++.++.. ..
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCI 366 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCT
T ss_pred cccccccccccccc--ccceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCC
Confidence 55667777777753 3555543 36778888888886 3577776543 488888888865 36676652 34
Q ss_pred ccceEeeeC
Q 036657 463 NIIELKLWY 471 (481)
Q Consensus 463 ~L~~L~L~~ 471 (481)
+|+++++..
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 677777753
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.017 Score=57.34 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=51.3
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEE
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSML 423 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L 423 (481)
...|..+.+....+.. ..+..+.+|+.+.+..+ ++.+++ |.++.+|+.+.+.. ++..++. .+.++++|+.+
T Consensus 275 ~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp CTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEE
T ss_pred ccccceeccCceeecc--ccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEE
Confidence 4455555444332211 12455666666666543 555654 66666666666653 3445532 35566666666
Q ss_pred eeeCCCCCccCCCCC--CCCCCcEEEeec
Q 036657 424 CFKGCESLRSFPRGI--HFVSPITIDFSF 450 (481)
Q Consensus 424 ~l~~c~~l~~lp~~~--~l~~L~~L~l~~ 450 (481)
.+.. +++.++... ++++|+.+.+..
T Consensus 349 ~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 349 NFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred EECc--cccEehHHHhhCCCCCCEEEECC
Confidence 6652 355555432 366666666643
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.016 Score=57.64 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=49.4
Q ss_pred CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCE
Q 036657 347 PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSM 422 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~ 422 (481)
..+|+.+.+. +.+..++.. +..+.+|+.+++..+ ++.+++ |.++.+|+.+.+.. ++..++. .|.++++|+.
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNN 361 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCE
Confidence 4566666664 345555544 566777777777653 667765 77777788777753 3555543 4677777877
Q ss_pred EeeeC
Q 036657 423 LCFKG 427 (481)
Q Consensus 423 L~l~~ 427 (481)
+++.+
T Consensus 362 i~~~~ 366 (394)
T 4gt6_A 362 IEYSG 366 (394)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 77765
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0092 Score=49.44 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=34.4
Q ss_pred ceeeccccCC--CCCCCCCCCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCC
Q 036657 330 YLHWHEYSLK--MLPFDFEPENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQ 382 (481)
Q Consensus 330 ~L~l~~~~l~--~lP~~~~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~ 382 (481)
.++.++..++ .+|..+ +.+|++|+|++|+|+.+|.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4455566666 666543 35677777777777777665 4667777777777763
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.048 Score=53.61 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=83.0
Q ss_pred cChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC-CC-CCCceEEEcCCCCcc
Q 036657 284 LNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD-FE-PENLIELNLPYSKVE 361 (481)
Q Consensus 284 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~-~~-l~~L~~L~L~~~~i~ 361 (481)
....+|..+.+|+.+.+..+- ...-...+.... .|+.+.+..+ ++.++.. |. ..+|..+.+..+ +.
T Consensus 208 i~~~~f~~~~~l~~i~~~~~~---------~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSGV---------TTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK 275 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTTC---------CEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS
T ss_pred Eeecccccccccceeeeccce---------eEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhcccccccc-ce
Confidence 345566677777777765432 111222344444 6777766554 5556554 33 677888888653 66
Q ss_pred ccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeee
Q 036657 362 QIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFK 426 (481)
Q Consensus 362 ~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~ 426 (481)
.++.. +..+.+|+.+.+.++ .++.+++ |.++.+|+.+.|.. ++..++. .|.++++|+.+.+.
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 66554 677889999998876 4788876 88888999998863 4666654 36667777776664
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.081 Score=43.62 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=40.9
Q ss_pred EEEcCCCCcc--cccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 352 ELNLPYSKVE--QIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 352 ~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
.++-++++++ .+|.++. .+|++|+|++| .++.+|. |..+++|++|+|.++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 6777888888 8887643 46899999999 4888886 7888999999998753
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.79 Score=43.82 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=66.6
Q ss_pred HHHHHHHhhhCCCchhHHHHhhhhCC-CChhHHH-HHHHHHhcCCchhhHHHHHhccccCchhhHHHhhhhccCCCCCCH
Q 036657 111 ELSQEVVCYADGNPLALEVLGSSLYH-KSKQQWK-DKLNNLKLISEPSIYKVLKISYDELNSEVKEIFIDIACFFKGEDI 188 (481)
Q Consensus 111 ~i~~~iv~~c~GlPLAl~~lg~~L~~-k~~~~W~-~~l~~l~~~~~~~i~~~L~lSYd~L~~~~K~cFl~~a~Fp~~~~~ 188 (481)
+....|+..|+|.|+++..++..+.. .+...+- ...+.....-..++. .+.+ . ++..+..+..+|+ .....
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~l~~-~-~~~~~~~l~~la~--g~~~~ 298 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELE---ELRR-R-SPRYVDILRAIAL--GYNRW 298 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---HHHH-H-CHHHHHHHHHHHT--TCCSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHH---HHHh-C-ChhHHHHHHHHHh--CCCCH
Confidence 45678999999999999999876532 2222221 111111100011111 1222 2 7888999999998 22445
Q ss_pred HHHHHHhc-----CC-CcccccHHHHhhCcceeecCCCceeh-hHHHHHH
Q 036657 189 DFMTRIHD-----DP-MSIHDGLNILVSKSLITISDENELQM-HDLLQEM 231 (481)
Q Consensus 189 ~~l~~~~~-----~~-~~~~~~~~~L~~r~li~~~~~~~~~m-Hdll~d~ 231 (481)
+.+..... -. -....+++.|+++++|... ++.+.+ |.++++.
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 299 SLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHH
Confidence 55555441 11 1345679999999999876 566665 5666654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=89.00 E-value=1 Score=43.07 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=67.8
Q ss_pred HHHHhhhCCCchhHHHHhhhhCCC-ChhHHHH-HHHHHhcCCchhhHHHHH-hccc--cCchhhHHHhhhhccCCCCCCH
Q 036657 114 QEVVCYADGNPLALEVLGSSLYHK-SKQQWKD-KLNNLKLISEPSIYKVLK-ISYD--ELNSEVKEIFIDIACFFKGEDI 188 (481)
Q Consensus 114 ~~iv~~c~GlPLAl~~lg~~L~~k-~~~~W~~-~l~~l~~~~~~~i~~~L~-lSYd--~L~~~~K~cFl~~a~Fp~~~~~ 188 (481)
..|+..|+|.|+++..++..+... +...|-. ..+... ..+...+. +.++ .||+..+..+..+|+-+ ..
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g~---~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSKCG---KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCB---CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHcCC---CH
Confidence 678999999999999999876432 3333321 111111 11111111 2221 68899999999999822 55
Q ss_pred HHHHHHh---cC---C-CcccccHHHHhhCcceeecCCCcee-hhHHHHHH
Q 036657 189 DFMTRIH---DD---P-MSIHDGLNILVSKSLITISDENELQ-MHDLLQEM 231 (481)
Q Consensus 189 ~~l~~~~---~~---~-~~~~~~~~~L~~r~li~~~~~~~~~-mHdll~d~ 231 (481)
+.+.... .+ . -....+++.|+++++|... .+.++ .|.++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHh
Confidence 5554322 12 1 1345679999999999877 46666 56777764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 481 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 5e-10 | |
| d1fyxa_ | 149 | c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H | 4e-06 | |
| d1fyva_ | 161 | c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H | 2e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-04 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 57.9 bits (139), Expect = 5e-10
Identities = 11/62 (17%), Positives = 24/62 (38%)
Query: 112 LSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNSE 171
+ + + + GNP L + S K+ ++ N L+ + + SY L
Sbjct: 210 VLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMA 269
Query: 172 VK 173
++
Sbjct: 270 LQ 271
|
| >d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 2, TLR2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 4e-06
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 5 NAIETSDISIIIFSKDYASSKWCLNELVKILD-CKKMNGQIVIPVFYQVDPSDVRKQRGT 63
++IE S ++ + S+++ S+WC EL N I + + QR
Sbjct: 56 DSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFC 115
Query: 64 FEKAFVHHENNFPDKVQKWRDVLTEASNF 92
+ ++ + +W + F
Sbjct: 116 KLRKIMNTKT-----YLEWPMDEAQREGF 139
|
| >d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 1, TLR1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (99), Expect = 2e-05
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 1 PAISNAIETSDISIIIFSKDYASSKWCLNELVKILDCK-KMNGQIVIPVFYQVDPSDVRK 59
I IE S SI + S ++ S+WC EL +I + + P
Sbjct: 57 ENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIP 116
Query: 60 QRGTFEKAFVHHENNFPDKVQKWRDVLTEASNF 92
K+ + +W ++ F
Sbjct: 117 SSYHKLKSLMARRT-----YLEWPKEKSKRGLF 144
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 32/213 (15%), Positives = 66/213 (30%), Gaps = 16/213 (7%)
Query: 273 FLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLH 332
L L ++P AFA + L L + ++P + + +ELR
Sbjct: 59 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP---------EKMPKTLQELRVHE 109
Query: 333 WHEYSLKMLPFDFEPEN--LIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDL 390
++ F+ + + P + KL YI I+ + + +
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQ 167
Query: 391 SETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSF 450
P+L +L + +S++ NNL+ L + +
Sbjct: 168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227
Query: 451 CVNLTEFPQISGNIIELK---LWYTAIEEVPSS 480
L + P + ++ L I + S+
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.66 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.65 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.61 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.57 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.52 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.51 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.5 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.48 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.46 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.42 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.41 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.4 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.38 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.37 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.33 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.33 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.32 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.32 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.29 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.26 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.24 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.21 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.11 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.02 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.01 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.94 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.92 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.88 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.69 | |
| d1fyxa_ | 149 | Toll-like receptor 2, TLR2 {Human (Homo sapiens) [ | 98.13 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.1 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.92 | |
| d1fyva_ | 161 | Toll-like receptor 1, TLR1 {Human (Homo sapiens) [ | 97.84 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.59 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.09 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.8 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.49 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 93.11 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 91.26 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 88.5 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 87.96 |
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=6.3e-16 Score=145.45 Aligned_cols=169 Identities=17% Similarity=0.111 Sum_probs=142.2
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecC-CccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLD-QGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAF 371 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~ 371 (481)
++|++|++++|.+ ..+| ..|..++ +|++|++++|.++.+|....+++|++|+|++|++...|..+..++
T Consensus 31 ~~l~~L~Ls~N~i---------~~l~~~~f~~l~-~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 100 (266)
T d1p9ag_ 31 KDTTILHLSENLL---------YTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100 (266)
T ss_dssp TTCCEEECTTSCC---------SEEEGGGGTTCT-TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCT
T ss_pred cCCCEEECcCCcC---------CCcCHHHhhccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5899999999984 4454 5688888 999999999999999876569999999999999999999999999
Q ss_pred CCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEeeeCCCCCccCCCC-C-CCCCCcEE
Q 036657 372 KLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCFKGCESLRSFPRG-I-HFVSPITI 446 (481)
Q Consensus 372 ~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~-~-~l~~L~~L 446 (481)
+|++|+++++. +..++. +..+.++++|+++++ .+..+|.. +..+++|+.|++++ +.++.+|.. + .+++|++|
T Consensus 101 ~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L 177 (266)
T d1p9ag_ 101 ALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTL 177 (266)
T ss_dssp TCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEE
T ss_pred ccccccccccc-cceeecccccccccccccccccc-ccceeccccccccccchhccccc-ccccccCcccccccccccee
Confidence 99999999995 666665 788999999999985 56677655 56789999999996 688888865 3 49999999
Q ss_pred EeecCCCCCccCCc---ccccceEeeeCcCCc
Q 036657 447 DFSFCVNLTEFPQI---SGNIIELKLWYTAIE 475 (481)
Q Consensus 447 ~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~ 475 (481)
+|+++. ++.+|+. ..+|+.|+|++|.+.
T Consensus 178 ~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 178 LLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp ECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ecccCC-CcccChhHCCCCCCCEEEecCCCCC
Confidence 999965 9999984 346789999988653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-15 Score=143.54 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=139.0
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE- 346 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~- 346 (481)
.++.+.+.. .....+.+.+|.++++|+.|++++|.+ ..+|. +..++ +|++|++++|+++..|..+.
T Consensus 32 ~l~~L~Ls~--N~i~~l~~~~f~~l~~L~~L~L~~N~l---------~~l~~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~ 98 (266)
T d1p9ag_ 32 DTTILHLSE--NLLYTFSLATLMPYTRLTQLNLDRAEL---------TKLQV-DGTLP-VLGTLDLSHNQLQSLPLLGQT 98 (266)
T ss_dssp TCCEEECTT--SCCSEEEGGGGTTCTTCCEEECTTSCC---------CEEEC-CSCCT-TCCEEECCSSCCSSCCCCTTT
T ss_pred CCCEEECcC--CcCCCcCHHHhhccccccccccccccc---------ccccc-ccccc-ccccccccccccccccccccc
Confidence 455554443 333456678899999999999999983 44553 46677 99999999999999988876
Q ss_pred CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCE
Q 036657 347 PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSM 422 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~ 422 (481)
+.+|++|+++++.+..++.. +..+.+|++|++++| .+..+|. +..+++|+.|+++++ .+..+|. .++.+++|++
T Consensus 99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~ 176 (266)
T d1p9ag_ 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDT 176 (266)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCE
T ss_pred ccccccccccccccceeecccccccccccccccccc-ccceeccccccccccchhcccccc-cccccCccccccccccce
Confidence 99999999999999887554 678999999999999 4888886 788999999999995 5666664 4788999999
Q ss_pred EeeeCCCCCccCCCCC-CCCCCcEEEeecCC
Q 036657 423 LCFKGCESLRSFPRGI-HFVSPITIDFSFCV 452 (481)
Q Consensus 423 L~l~~c~~l~~lp~~~-~l~~L~~L~l~~c~ 452 (481)
|++++ +.++.+|..+ .+++|+.|+|+|++
T Consensus 177 L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 177 LLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp EECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred eeccc-CCCcccChhHCCCCCCCEEEecCCC
Confidence 99997 5799999877 59999999999854
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.61 E-value=1.2e-15 Score=146.78 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=140.4
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeC-CCCCCCcccCcceecCCccccccccccceeeccccCCCCCCC
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYM-PKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFD 344 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~-~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~ 344 (481)
..+|..+.+.........--+..+.++++|++|++++ |.+ .+.+|..++.++ +|++|++++|.+..++..
T Consensus 49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l--------~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~ 119 (313)
T d1ogqa_ 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--------VGPIPPAIAKLT-QLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--------ESCCCGGGGGCT-TCSEEEEEEECCEEECCG
T ss_pred cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc--------cccccccccccc-ccchhhhccccccccccc
Confidence 3456666665443332222357889999999999986 553 457999999999 999999999999887665
Q ss_pred -CC-CCCceEEEcCCCCcc-cccccccCCCCCcEEeccCCCCCcccCC-CCCCCCC-CEEeccCC---------------
Q 036657 345 -FE-PENLIELNLPYSKVE-QIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNL-ERTNLLNC--------------- 404 (481)
Q Consensus 345 -~~-l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L-~~L~L~~c--------------- 404 (481)
+. +.+|+++++++|.+. .+|..+..+++|+++++++|.....+|+ +..+.++ +.+.++++
T Consensus 120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~ 199 (313)
T d1ogqa_ 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred cccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 44 889999999998766 5688899999999999999864456776 5555554 55554432
Q ss_pred --------CCCccccccccCCCCCCEEeeeCCCCCccCCCCC-CCCCCcEEEeecCCCCC-ccCCccc---ccceEeeeC
Q 036657 405 --------RDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI-HFVSPITIDFSFCVNLT-EFPQISG---NIIELKLWY 471 (481)
Q Consensus 405 --------~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~-~l~~L~~L~l~~c~~L~-~lp~~~~---~L~~L~L~~ 471 (481)
.....+|..++.+++|+.+++.++. +...+..+ .+++|+.|++++|. +. .+|..++ +|++|+|++
T Consensus 200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-l~~~~~~~~~~~~L~~L~Ls~N~-l~g~iP~~l~~L~~L~~L~Ls~ 277 (313)
T d1ogqa_ 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCS
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccccccccccCccCe-ecccCChHHhCCCCCCEEECcC
Confidence 2222344455666777777777643 33333333 37778888887755 44 6777543 457788887
Q ss_pred cCCc-cCCC
Q 036657 472 TAIE-EVPS 479 (481)
Q Consensus 472 ~~l~-~lP~ 479 (481)
|+|+ .+|.
T Consensus 278 N~l~g~iP~ 286 (313)
T d1ogqa_ 278 NNLCGEIPQ 286 (313)
T ss_dssp SEEEEECCC
T ss_pred CcccccCCC
Confidence 7776 6664
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=3.6e-15 Score=135.11 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=130.7
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCC
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKA 370 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L 370 (481)
.+.+|+.|++.++.+ ..++ ++..++ +|++|++++|.++.+|+...+.+|++|++++|+++.+| .+..+
T Consensus 44 ~L~~L~~L~l~~~~i---------~~l~-~l~~l~-~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l 111 (210)
T d1h6ta2 44 ELNSIDQIIANNSDI---------KSVQ-GIQYLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDL 111 (210)
T ss_dssp HHHTCCEEECTTSCC---------CCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTC
T ss_pred HhcCccEEECcCCCC---------CCch-hHhhCC-CCCEEeCCCccccCccccccCccccccccccccccccc-ccccc
Confidence 356788889888773 3344 477888 99999999999998886555899999999999999887 58889
Q ss_pred CCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeec
Q 036657 371 FKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSF 450 (481)
Q Consensus 371 ~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~ 450 (481)
++|+.|++++|. +..++.+..+++|+.++++++ .+...+ .+..+++|++++++++ .+..++...++++|++|++++
T Consensus 112 ~~L~~L~l~~~~-~~~~~~l~~l~~l~~l~~~~n-~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~Ls~ 187 (210)
T d1h6ta2 112 KKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSK 187 (210)
T ss_dssp TTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCS
T ss_pred cccccccccccc-ccccccccccccccccccccc-cccccc-cccccccccccccccc-cccccccccCCCCCCEEECCC
Confidence 999999999884 677777888999999999885 344443 5778899999999974 677777644699999999998
Q ss_pred CCCCCccCCc--ccccceEeeeC
Q 036657 451 CVNLTEFPQI--SGNIIELKLWY 471 (481)
Q Consensus 451 c~~L~~lp~~--~~~L~~L~L~~ 471 (481)
| .++.+|.. +.+|+.|+|++
T Consensus 188 N-~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 188 N-HISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp S-CCCBCGGGTTCTTCSEEEEEE
T ss_pred C-CCCCChhhcCCCCCCEEEccC
Confidence 7 48888853 46788998874
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.57 E-value=4.4e-14 Score=135.08 Aligned_cols=195 Identities=19% Similarity=0.187 Sum_probs=112.6
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEP 347 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 347 (481)
.++.+.+.. .....+.+.+|.++++|+.|++++|.+ ....|..+..++ +|++|++++|.++.+|..+.
T Consensus 32 ~l~~L~Ls~--N~i~~l~~~~f~~l~~L~~L~l~~n~~--------~~i~~~~f~~l~-~L~~L~l~~n~l~~l~~~~~- 99 (305)
T d1xkua_ 32 DTALLDLQN--NKITEIKDGDFKNLKNLHTLILINNKI--------SKISPGAFAPLV-KLERLYLSKNQLKELPEKMP- 99 (305)
T ss_dssp TCCEEECCS--SCCCCBCTTTTTTCTTCCEEECCSSCC--------CCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC-
T ss_pred CCCEEECcC--CcCCCcChhHhhccccccccccccccc--------cccchhhhhCCC-ccCEecccCCccCcCccchh-
Confidence 455554443 333445667788899999999988873 333356688888 88999998888888886543
Q ss_pred CCceEEEcCCCCcccccc---------------------------cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEe
Q 036657 348 ENLIELNLPYSKVEQIWK---------------------------GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTN 400 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~---------------------------~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~ 400 (481)
..|..|++.++.+..++. .+..+++|+++++++|. +..+|. ..+++|++|+
T Consensus 100 ~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~-~~~~~L~~L~ 177 (305)
T d1xkua_ 100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ-GLPPSLTELH 177 (305)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS-SCCTTCSEEE
T ss_pred hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCc-ccCCccCEEE
Confidence 456666666665544321 13345667777777663 555553 1245566666
Q ss_pred ccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCCc---ccccceEeeeCcCCc
Q 036657 401 LLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQI---SGNIIELKLWYTAIE 475 (481)
Q Consensus 401 L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~~---~~~L~~L~L~~~~l~ 475 (481)
++++......+..+..++.++.|+++++ .+..++... ++++|++|++++| +++.+|.. +.+|+.|+|++|+|+
T Consensus 178 l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 178 LDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCccC
Confidence 6655444444444555555555555542 444443322 2555555555554 35555442 223455555555555
Q ss_pred cCC
Q 036657 476 EVP 478 (481)
Q Consensus 476 ~lP 478 (481)
.+|
T Consensus 256 ~i~ 258 (305)
T d1xkua_ 256 AIG 258 (305)
T ss_dssp CCC
T ss_pred ccC
Confidence 544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=3.5e-14 Score=127.26 Aligned_cols=153 Identities=14% Similarity=0.212 Sum_probs=116.4
Q ss_pred ccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccC
Q 036657 290 ANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKK 369 (481)
Q Consensus 290 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~ 369 (481)
..+.+|+.|++.++.+ ..+ +++..++ +|++|++++|.++.+++--.+++|++|++++|.+..++. +..
T Consensus 37 ~~l~~l~~L~l~~~~i---------~~l-~~l~~l~-nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~ 104 (199)
T d2omxa2 37 TDLDQVTTLQADRLGI---------KSI-DGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LAN 104 (199)
T ss_dssp HHHTTCCEEECTTSCC---------CCC-TTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred HHhcCCCEEECCCCCC---------CCc-cccccCC-CcCcCccccccccCcccccCCcccccccccccccccccc-ccc
Confidence 3467888888888773 333 3467777 888888888888887763348888999998888887763 778
Q ss_pred CCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEee
Q 036657 370 AFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFS 449 (481)
Q Consensus 370 L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~ 449 (481)
+++|+.|++++|. ...++.+..+++|+.|++++| .+..++ .+..+++|+.|++.+ +.++.++...++++|++|+++
T Consensus 105 l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~l~~~~~L~~L~l~~-n~l~~l~~l~~l~~L~~L~ls 180 (199)
T d2omxa2 105 LTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLNFSS-NQVTDLKPLANLTTLERLDIS 180 (199)
T ss_dssp CTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECCS-SCCCCCGGGTTCTTCCEEECC
T ss_pred ccccccccccccc-cccccccchhhhhHHhhhhhh-hhcccc-ccccccccccccccc-ccccCCccccCCCCCCEEECC
Confidence 8889999988874 566666888888999998885 355554 578888889998886 467777764468889999998
Q ss_pred cCCCCCccCC
Q 036657 450 FCVNLTEFPQ 459 (481)
Q Consensus 450 ~c~~L~~lp~ 459 (481)
+|. +..+|.
T Consensus 181 ~N~-i~~i~~ 189 (199)
T d2omxa2 181 SNK-VSDISV 189 (199)
T ss_dssp SSC-CCCCGG
T ss_pred CCC-CCCCcc
Confidence 874 777764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.52 E-value=3.9e-14 Score=129.63 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=119.6
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCC
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEP 347 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l 347 (481)
.++.+.+...... .+ ..+.+|++|+.|++++|.+ ..++ .+..++ ++++++++++.++.++.-..+
T Consensus 42 ~L~~L~l~~~~i~--~l--~~l~~l~~L~~L~ls~n~i---------~~~~-~l~~l~-~l~~l~~~~n~~~~i~~l~~l 106 (227)
T d1h6ua2 42 GITTLSAFGTGVT--TI--EGVQYLNNLIGLELKDNQI---------TDLA-PLKNLT-KITELELSGNPLKNVSAIAGL 106 (227)
T ss_dssp TCCEEECTTSCCC--CC--TTGGGCTTCCEEECCSSCC---------CCCG-GGTTCC-SCCEEECCSCCCSCCGGGTTC
T ss_pred CcCEEECCCCCCC--cc--hhHhcCCCCcEeecCCcee---------eccc-cccccc-ccccccccccccccccccccc
Confidence 4455555544332 22 2467778888888877763 2222 266666 777888877777777654557
Q ss_pred CCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeC
Q 036657 348 ENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 348 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
++|++|+++++....++ .+...+.++.+.++.+. +...+.+..+++|++|++.+|. +...+ .++++++|+.|++++
T Consensus 107 ~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~Ls~ 182 (227)
T d1h6ua2 107 QSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADD 182 (227)
T ss_dssp TTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCS
T ss_pred ccccccccccccccccc-hhccccchhhhhchhhh-hchhhhhccccccccccccccc-cccch-hhcccccceecccCC
Confidence 77888888777665543 24566777777777663 5555556777788888887753 33333 477788888888886
Q ss_pred CCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeee
Q 036657 428 CESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLW 470 (481)
Q Consensus 428 c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~ 470 (481)
| .++.+|...++++|++|++++| +++++|. .+.+|+.|+++
T Consensus 183 n-~l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 183 N-KISDISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp S-CCCCCGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred C-ccCCChhhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence 4 6777765445788888888886 4777774 35567777775
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.51 E-value=5.5e-14 Score=125.95 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=126.0
Q ss_pred cccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEecc
Q 036657 323 YLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLL 402 (481)
Q Consensus 323 ~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~ 402 (481)
.++ ++++|+++++.+++++.--.+++|++|++++|+++.++. ++.+++|++|++++|. +..+|.++++++|+.|+++
T Consensus 38 ~l~-~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~ 114 (199)
T d2omxa2 38 DLD-QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLF 114 (199)
T ss_dssp HHT-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECC
T ss_pred Hhc-CCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccc-ccccccccccccccccccc
Confidence 455 899999999999998653338999999999999998875 8999999999999994 8888889999999999999
Q ss_pred CCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEeecCCCCCccCC--cccccceEeeeCcCCccCC
Q 036657 403 NCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDFSFCVNLTEFPQ--ISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 403 ~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP 478 (481)
+|... .+ ..+..+++|+.|+++++ .+..+|....+++|+.|++++|. +..++. .+.+|++|++++|+|+++|
T Consensus 115 ~~~~~-~~-~~~~~l~~L~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N~i~~i~ 188 (199)
T d2omxa2 115 NNQIT-DI-DPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSNKVSDIS 188 (199)
T ss_dssp SSCCC-CC-GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred ccccc-cc-cccchhhhhHHhhhhhh-hhccccccccccccccccccccc-ccCCccccCCCCCCEEECCCCCCCCCc
Confidence 86543 33 35888999999999974 67777754569999999999974 888875 3568899999999999876
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.6e-13 Score=127.41 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=107.0
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeec-cccCCCCCCC-C
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWH-EYSLKMLPFD-F 345 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~-~~~l~~lP~~-~ 345 (481)
.++.+.+. ......+.+.+|.++++|+.|+++++.+ ....+..+..++ .++.+... .+.+..+++. |
T Consensus 33 ~~~~L~Ls--~N~i~~i~~~~f~~l~~L~~L~ls~n~l--------~~i~~~~~~~~~-~~~~l~~~~~~~~~~l~~~~~ 101 (284)
T d1ozna_ 33 ASQRIFLH--GNRISHVPAASFRACRNLTILWLHSNVL--------ARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATF 101 (284)
T ss_dssp TCSEEECT--TSCCCEECTTTTTTCTTCCEEECCSSCC--------CEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTT
T ss_pred CCCEEECc--CCcCCCCCHHHhhccccccccccccccc--------cccccccccccc-cccccccccccccccccchhh
Confidence 34555444 3333456778899999999999998884 222222333334 44444432 3345555433 3
Q ss_pred C-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCC
Q 036657 346 E-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNL 420 (481)
Q Consensus 346 ~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L 420 (481)
. +.+|++|++++|.+..++.. +..+.+|+.+++++| .++.+|. +..+++|++|+++++ .+..+|. .+..+++|
T Consensus 102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L 179 (284)
T d1ozna_ 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSL 179 (284)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred cccccCCEEecCCcccccccccccchhcccchhhhccc-cccccChhHhccccchhhcccccC-cccccchhhhcccccc
Confidence 3 56666666666666555433 445666666666666 3555554 556666666666663 3444432 35556666
Q ss_pred CEEeeeCCCCCccC-CCCCC-CCCCcEEEeecCCCCCccCC-c---ccccceEeeeCcCC
Q 036657 421 SMLCFKGCESLRSF-PRGIH-FVSPITIDFSFCVNLTEFPQ-I---SGNIIELKLWYTAI 474 (481)
Q Consensus 421 ~~L~l~~c~~l~~l-p~~~~-l~~L~~L~l~~c~~L~~lp~-~---~~~L~~L~L~~~~l 474 (481)
+.+++.++ .+..+ |..+. +++|++|+++++. +..+|. . ..+|++|++++|.+
T Consensus 180 ~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 180 DRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237 (284)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred chhhhhhc-cccccChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCCCC
Confidence 66666653 33333 33333 6666666666643 555443 1 33456666666554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=1e-13 Score=125.32 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=125.0
Q ss_pred hhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccc
Q 036657 288 AFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGE 367 (481)
Q Consensus 288 ~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~ 367 (481)
.+..+++|+.|++++|.+ ..++ .+..++ +|++|++++|.++.+|....+.+|+.|++.++.+..++ .+
T Consensus 63 ~l~~l~~L~~L~L~~n~i---------~~l~-~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~-~l 130 (210)
T d1h6ta2 63 GIQYLPNVTKLFLNGNKL---------TDIK-PLANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GL 130 (210)
T ss_dssp TGGGCTTCCEEECCSSCC---------CCCG-GGTTCT-TCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GG
T ss_pred hHhhCCCCCEEeCCCccc---------cCcc-ccccCc-cccccccccccccccccccccccccccccccccccccc-cc
Confidence 478899999999999984 3344 367788 99999999999999986555999999999999988765 57
Q ss_pred cCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEE
Q 036657 368 KKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITID 447 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~ 447 (481)
..+++|+.+++++|. +...+.++.+++|+++++++| .+..++ .+.++++|+.|++++| .++.+|...++++|+.|+
T Consensus 131 ~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n-~l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~ 206 (210)
T d1h6ta2 131 VHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLE 206 (210)
T ss_dssp GGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEE
T ss_pred ccccccccccccccc-ccccccccccccccccccccc-cccccc-cccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEE
Confidence 889999999999984 777777889999999999996 566776 4899999999999975 788988644699999999
Q ss_pred eec
Q 036657 448 FSF 450 (481)
Q Consensus 448 l~~ 450 (481)
|++
T Consensus 207 Ls~ 209 (210)
T d1h6ta2 207 LFS 209 (210)
T ss_dssp EEE
T ss_pred ccC
Confidence 976
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.48 E-value=2.7e-13 Score=123.88 Aligned_cols=174 Identities=17% Similarity=0.223 Sum_probs=142.5
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
+..+.+|+.|.+.++. ...++ ++..++ +|++|++++|.+..+++...+.+|++|++++|.++.++ ++.
T Consensus 37 ~~~l~~L~~L~l~~~~---------i~~l~-~l~~l~-~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~ 104 (227)
T d1h6ua2 37 QADLDGITTLSAFGTG---------VTTIE-GVQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIA 104 (227)
T ss_dssp HHHHHTCCEEECTTSC---------CCCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGT
T ss_pred HHHcCCcCEEECCCCC---------CCcch-hHhcCC-CCcEeecCCceeeccccccccccccccccccccccccc-ccc
Confidence 4567889999999987 34564 688899 99999999999998876555999999999999998875 578
Q ss_pred CCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEe
Q 036657 369 KAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDF 448 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l 448 (481)
.+++|+.++++++. ...++.+...+.++.+.+++|. +... ..+...++|++|++.+| .+...+...++++|+.|++
T Consensus 105 ~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~L 180 (227)
T d1h6ua2 105 GLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKA 180 (227)
T ss_dssp TCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSC-CCCC-GGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred cccccccccccccc-ccccchhccccchhhhhchhhh-hchh-hhhcccccccccccccc-ccccchhhcccccceeccc
Confidence 89999999999985 6667778888999999998865 3333 24778899999999964 5665555446999999999
Q ss_pred ecCCCCCccCC--cccccceEeeeCcCCccCCC
Q 036657 449 SFCVNLTEFPQ--ISGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 449 ~~c~~L~~lp~--~~~~L~~L~L~~~~l~~lP~ 479 (481)
++| +++.+|. .+.+|++|+|++|+|+++|+
T Consensus 181 s~n-~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~ 212 (227)
T d1h6ua2 181 DDN-KISDISPLASLPNLIEVHLKNNQISDVSP 212 (227)
T ss_dssp CSS-CCCCCGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred CCC-ccCCChhhcCCCCCCEEECcCCcCCCCcc
Confidence 997 5888886 35788999999999998874
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.46 E-value=4.6e-14 Score=135.54 Aligned_cols=181 Identities=17% Similarity=0.122 Sum_probs=141.8
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeecc-ccCC-CCCCCCC-CCCceEEEcCCCCccccc-cccc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHE-YSLK-MLPFDFE-PENLIELNLPYSKVEQIW-KGEK 368 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~-~~l~-~lP~~~~-l~~L~~L~L~~~~i~~lp-~~~~ 368 (481)
.+++.|++.++... ....+|..++.++ +|++|++++ |.+. .+|+.+. +.+|++|+|++|++..++ ..+.
T Consensus 50 ~~v~~L~L~~~~l~------g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~ 122 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLP------KPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCS------SCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred EEEEEEECCCCCCC------CCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence 36888999988741 1236899999999 999999987 5665 7999887 999999999999998764 4588
Q ss_pred CCCCCcEEeccCCCCCcccCC-CCCCCCCCEEeccCCCCCccccccccCCCCC-CEEeeeCCCCCcc-------------
Q 036657 369 KAFKLKYIDISHSQQLVRMLD-LSETPNLERTNLLNCRDLACVRSSIENFNNL-SMLCFKGCESLRS------------- 433 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L-~~L~l~~c~~l~~------------- 433 (481)
.+.+|+++++++|.....+|. ++++++|++++++++.....+|..++.+.++ +.+++++ +.+..
T Consensus 123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~~~ 201 (313)
T d1ogqa_ 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLNLAF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCCCSE
T ss_pred chhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 899999999999976777776 9999999999999977666788888888776 6666654 23321
Q ss_pred -----------CCCCC-CCCCCcEEEeecCCCCCccCCc--ccccceEeeeCcCCc-cCCCCC
Q 036657 434 -----------FPRGI-HFVSPITIDFSFCVNLTEFPQI--SGNIIELKLWYTAIE-EVPSSI 481 (481)
Q Consensus 434 -----------lp~~~-~l~~L~~L~l~~c~~L~~lp~~--~~~L~~L~L~~~~l~-~lP~si 481 (481)
+|... .+++|+.+++++|.....+|.. ..+|+.|+|++|+++ .+|.+|
T Consensus 202 l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l 264 (313)
T d1ogqa_ 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHH
Confidence 22233 3788999999987644445543 567899999999997 788754
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.42 E-value=1.2e-12 Score=124.88 Aligned_cols=194 Identities=15% Similarity=0.147 Sum_probs=135.3
Q ss_pred CcceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCcccc---------------------c
Q 036657 266 TDKVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEY---------------------L 324 (481)
Q Consensus 266 ~~~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~---------------------l 324 (481)
...++.+.+... ....+.+..|.++++|+.|++.+|.+ ..+|..+.. .
T Consensus 54 l~~L~~L~l~~n--~~~~i~~~~f~~l~~L~~L~l~~n~l---------~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~ 122 (305)
T d1xkua_ 54 LKNLHTLILINN--KISKISPGAFAPLVKLERLYLSKNQL---------KELPEKMPKTLQELRVHENEITKVRKSVFNG 122 (305)
T ss_dssp CTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCC---------SBCCSSCCTTCCEEECCSSCCCBBCHHHHTT
T ss_pred cccccccccccc--cccccchhhhhCCCccCEecccCCcc---------CcCccchhhhhhhhhccccchhhhhhhhhhc
Confidence 345566555433 34456778899999999999999874 223322110 0
Q ss_pred cccccceeeccccCCC---CCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC-CCCCCCCCEE
Q 036657 325 PEELRYLHWHEYSLKM---LPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD-LSETPNLERT 399 (481)
Q Consensus 325 ~~~Lr~L~l~~~~l~~---lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~-~~~l~~L~~L 399 (481)
...++.+....++... .+..+. +.+|+++++.++.+..+|..+ +++|+.|++++|......|. +.++++++.|
T Consensus 123 ~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L 200 (305)
T d1xkua_ 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 200 (305)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred cccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhcccccccc
Confidence 0123333333333222 122233 678999999999998887654 68999999999864444444 8889999999
Q ss_pred eccCCCCCccc-cccccCCCCCCEEeeeCCCCCccCCCCCC-CCCCcEEEeecCCCCCccCCc----------ccccceE
Q 036657 400 NLLNCRDLACV-RSSIENFNNLSMLCFKGCESLRSFPRGIH-FVSPITIDFSFCVNLTEFPQI----------SGNIIEL 467 (481)
Q Consensus 400 ~L~~c~~l~~l-p~~i~~L~~L~~L~l~~c~~l~~lp~~~~-l~~L~~L~l~~c~~L~~lp~~----------~~~L~~L 467 (481)
++++| .+..+ +..+.++++|+.|++++| .++.+|..+. +++|+.|++++| +++.++.. ..+|+.|
T Consensus 201 ~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L 277 (305)
T d1xkua_ 201 GLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV 277 (305)
T ss_dssp ECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred ccccc-cccccccccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEE
Confidence 99986 45555 456788999999999985 7889988775 999999999996 58887641 3467899
Q ss_pred eeeCcCCc
Q 036657 468 KLWYTAIE 475 (481)
Q Consensus 468 ~L~~~~l~ 475 (481)
+|++|.++
T Consensus 278 ~L~~N~~~ 285 (305)
T d1xkua_ 278 SLFSNPVQ 285 (305)
T ss_dssp ECCSSSSC
T ss_pred ECCCCcCc
Confidence 99999886
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=5e-13 Score=131.28 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=107.3
Q ss_pred hccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCccccccccc
Q 036657 289 FANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEK 368 (481)
Q Consensus 289 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~ 368 (481)
+..+++|+.|++.+|.+ ..+ +.+..++ +|+.|++.++.+..+++...+.+|++|+++++.+..++. +.
T Consensus 215 ~~~~~~L~~L~l~~n~l---------~~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~ 282 (384)
T d2omza2 215 LGILTNLDELSLNGNQL---------KDI-GTLASLT-NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LA 282 (384)
T ss_dssp GGGCTTCCEEECCSSCC---------CCC-GGGGGCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GT
T ss_pred ccccCCCCEEECCCCCC---------CCc-chhhccc-ccchhccccCccCCCCcccccccCCEeeccCcccCCCCc-cc
Confidence 45566666666666652 222 2455555 677777777776666654446677777777776666543 55
Q ss_pred CCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcEEEe
Q 036657 369 KAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPITIDF 448 (481)
Q Consensus 369 ~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~L~l 448 (481)
.++.++.++++.|. +..++.+..+++++.|+++++ .+..++ .+..+++|++|++++| .++.+|...++++|++|++
T Consensus 283 ~~~~l~~l~~~~n~-l~~~~~~~~~~~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l 358 (384)
T d2omza2 283 GLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSA 358 (384)
T ss_dssp TCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSS-CCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEEC
T ss_pred cccccccccccccc-cccccccchhcccCeEECCCC-CCCCCc-ccccCCCCCEEECCCC-CCCCChhHcCCCCCCEEEC
Confidence 66677777777663 555555667777777777774 455554 3677777777777765 6666664334777777777
Q ss_pred ecCCCCCccCC--cccccceEeeeCcC
Q 036657 449 SFCVNLTEFPQ--ISGNIIELKLWYTA 473 (481)
Q Consensus 449 ~~c~~L~~lp~--~~~~L~~L~L~~~~ 473 (481)
++| ++..+|. .+++|+.|+|++|+
T Consensus 359 ~~N-~l~~l~~l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 359 GHN-QISDLTPLANLTRITQLGLNDQA 384 (384)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEECCCEE
T ss_pred CCC-cCCCChhhccCCCCCEeeCCCCc
Confidence 775 4666664 24566777777663
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=4.8e-13 Score=110.09 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=80.4
Q ss_pred cceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCc
Q 036657 329 RYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLA 408 (481)
Q Consensus 329 r~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~ 408 (481)
|+|++++|.++.+|.--.+.+|++|++++|.++.+|.++..+++|++|++++| .++.+|.++.+++|++|++++ +.+.
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~l~~-N~i~ 78 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCN-NRLQ 78 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCS-SCCC
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccCccccccccCeEECCC-CccC
Confidence 56777777777776533377888888888888888777788888888888887 477777778888888888887 3455
Q ss_pred ccc--ccccCCCCCCEEeeeCCCCCccCCCCC----C-CCCCcEE
Q 036657 409 CVR--SSIENFNNLSMLCFKGCESLRSFPRGI----H-FVSPITI 446 (481)
Q Consensus 409 ~lp--~~i~~L~~L~~L~l~~c~~l~~lp~~~----~-l~~L~~L 446 (481)
.+| ..++.+++|+.|++++ +.+...+... . +++|+.|
T Consensus 79 ~~~~~~~l~~~~~L~~L~l~~-N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 79 QSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp SSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCchhhcCCCCCCEEECCC-CcCCcCccHHHHHHHHCcCcceE
Confidence 554 3467777888888875 4555544322 1 5666554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.40 E-value=3e-12 Score=123.74 Aligned_cols=74 Identities=22% Similarity=0.156 Sum_probs=60.6
Q ss_pred CCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCC
Q 036657 292 MSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAF 371 (481)
Q Consensus 292 l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~ 371 (481)
.++|+.|++++|. ...+|..+ .+|+.|++.++.++.++.. +..|++|++++|.+..+|. +..++
T Consensus 57 ~~~L~~L~Ls~N~---------l~~lp~~~----~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~~lp~-~~~l~ 120 (353)
T d1jl5a_ 57 PPHLESLVASCNS---------LTELPELP----QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPE-LQNSS 120 (353)
T ss_dssp CTTCSEEECCSSC---------CSSCCCCC----TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCC-CTTCT
T ss_pred CCCCCEEECCCCC---------Ccccccch----hhhhhhhhhhcccchhhhh--ccccccccccccccccccc-hhhhc
Confidence 5789999999888 45677653 3888999999988887742 4679999999999999985 67899
Q ss_pred CCcEEeccCC
Q 036657 372 KLKYIDISHS 381 (481)
Q Consensus 372 ~L~~L~Ls~~ 381 (481)
+|++|+++++
T Consensus 121 ~L~~L~l~~~ 130 (353)
T d1jl5a_ 121 FLKIIDVDNN 130 (353)
T ss_dssp TCCEEECCSS
T ss_pred cceeeccccc
Confidence 9999998776
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.38 E-value=1.6e-12 Score=127.52 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=144.2
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWK 365 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~ 365 (481)
...+..+++++.|.+.++.+ ..++. ....+ +|+.|+++++.++.+|....+.+|++|++++|.+..++.
T Consensus 190 ~~~~~~l~~~~~l~l~~n~i---------~~~~~-~~~~~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 258 (384)
T d2omza2 190 ISVLAKLTNLESLIATNNQI---------SDITP-LGILT-NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 258 (384)
T ss_dssp CGGGGGCTTCSEEECCSSCC---------CCCGG-GGGCT-TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ccccccccccceeeccCCcc---------CCCCc-ccccC-CCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc
Confidence 45678899999999998873 22322 34445 899999999999998754458999999999999998864
Q ss_pred cccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCccccccccCCCCCCEEeeeCCCCCccCCCCCCCCCCcE
Q 036657 366 GEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSSIENFNNLSMLCFKGCESLRSFPRGIHFVSPIT 445 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~L~~L~~L~l~~c~~l~~lp~~~~l~~L~~ 445 (481)
+..+++|++|+++++. +..++.+..++.++.+.+.++ .+..++ .+..++++++|+++++ +++.++....+++|++
T Consensus 259 -~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~ 333 (384)
T d2omza2 259 -LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFN-NISDISPVSSLTKLQR 333 (384)
T ss_dssp -GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS-CCSCCG-GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCE
T ss_pred -ccccccCCEeeccCcc-cCCCCcccccccccccccccc-cccccc-ccchhcccCeEECCCC-CCCCCcccccCCCCCE
Confidence 7889999999999984 888888889999999999985 455544 5888999999999974 7888775445999999
Q ss_pred EEeecCCCCCccCCc--ccccceEeeeCcCCccCCC
Q 036657 446 IDFSFCVNLTEFPQI--SGNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 446 L~l~~c~~L~~lp~~--~~~L~~L~L~~~~l~~lP~ 479 (481)
|++++| +++.+|.+ +.+|++|++++|+|+.+|+
T Consensus 334 L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~l~~l~~ 368 (384)
T d2omza2 334 LFFANN-KVSDVSSLANLTNINWLSAGHNQISDLTP 368 (384)
T ss_dssp EECCSS-CCCCCGGGGGCTTCCEEECCSSCCCBCGG
T ss_pred EECCCC-CCCCChhHcCCCCCCEEECCCCcCCCChh
Confidence 999998 58887753 4578999999999998863
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=6.6e-12 Score=118.46 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=139.9
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCCCCCCCC--CCCceEEEcC-CCCcccc-cccc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKMLPFDFE--PENLIELNLP-YSKVEQI-WKGE 367 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lP~~~~--l~~L~~L~L~-~~~i~~l-p~~~ 367 (481)
++++.|++++|.+ ..+|. .+..++ +|++|+++++.+..++.... +..+..+... .+.+..+ |..+
T Consensus 32 ~~~~~L~Ls~N~i---------~~i~~~~f~~l~-~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 101 (284)
T d1ozna_ 32 AASQRIFLHGNRI---------SHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (284)
T ss_dssp TTCSEEECTTSCC---------CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCCEEECcCCcC---------CCCCHHHhhccc-cccccccccccccccccccccccccccccccccccccccccchhh
Confidence 5689999999984 45664 688888 99999999999998887643 7788888765 5577777 4558
Q ss_pred cCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCccccc-cccCCCCCCEEeeeCCCCCccCCCCC--CCCC
Q 036657 368 KKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVRS-SIENFNNLSMLCFKGCESLRSFPRGI--HFVS 442 (481)
Q Consensus 368 ~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp~-~i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~ 442 (481)
.++++|++|++++|. +..++. +..+++|+.+++++ +.+..+|. .+..+++|++|+++++ .++.+|... ++++
T Consensus 102 ~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~ 178 (284)
T d1ozna_ 102 HGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHS 178 (284)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred cccccCCEEecCCcc-cccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccC-cccccchhhhccccc
Confidence 899999999999995 666654 78899999999998 56777764 5778999999999974 788887644 4999
Q ss_pred CcEEEeecCCCCCcc-CCcc---cccceEeeeCcCCccCCC
Q 036657 443 PITIDFSFCVNLTEF-PQIS---GNIIELKLWYTAIEEVPS 479 (481)
Q Consensus 443 L~~L~l~~c~~L~~l-p~~~---~~L~~L~L~~~~l~~lP~ 479 (481)
|+.++++++. +..+ |..+ .+|++|++++|.+..+|+
T Consensus 179 L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~ 218 (284)
T d1ozna_ 179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (284)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred cchhhhhhcc-ccccChhHhhhhhhcccccccccccccccc
Confidence 9999999976 5555 5544 577999999999988874
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.33 E-value=1.6e-13 Score=129.38 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhhhCCCchhHHHHhhhhCCCChhHHHHHHHHHhcCCchhhHHHHHhccccCchhhHHHhhh
Q 036657 107 RDLLELSQEVVCYADGNPLALEVLGSSLYHKSKQQWKDKLNNLKLISEPSIYKVLKISYDELNSEVKEIFID 178 (481)
Q Consensus 107 ~~~~~i~~~iv~~c~GlPLAl~~lg~~L~~k~~~~W~~~l~~l~~~~~~~i~~~L~lSYd~L~~~~K~cFl~ 178 (481)
+..++++++||++|+|+||||+++|+.|+.++.++|.+..+.|.+....+|.++|++||++||+++|+||-+
T Consensus 205 ~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk~c~~~ 276 (277)
T d2a5yb3 205 EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 276 (277)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHHHHHHh
Confidence 567899999999999999999999999999999999999999988888899999999999999999999975
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=8.5e-12 Score=114.62 Aligned_cols=198 Identities=14% Similarity=0.141 Sum_probs=142.9
Q ss_pred ceeeeeecCCcccccccChHhhccCCCCcEEEEeCCCCCCCcccCcceec-CCccccccccccceeecc-ccCCCCCCC-
Q 036657 268 KVEGIFLDLSKINDIHLNPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHL-DQGLEYLPEELRYLHWHE-YSLKMLPFD- 344 (481)
Q Consensus 268 ~v~~i~l~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~-~~l~~lP~~- 344 (481)
.++.+.+..+. ...+...+|.++++|++|++++|.+ ...+ +..+..++ .+++|.+.. +.+..++..
T Consensus 30 ~l~~L~Ls~n~--i~~l~~~~f~~l~~L~~L~ls~n~~--------~~~i~~~~f~~l~-~l~~l~~~~~n~l~~~~~~~ 98 (242)
T d1xwdc1 30 NAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDV--------LEVIEADVFSNLP-KLHEIRIEKANNLLYINPEA 98 (242)
T ss_dssp CCSEEEEESCC--CCEECTTTTTTCTTCCEEEEESCTT--------CCEECSSSEESCT-TCCEEEEECCTTCCEECTTS
T ss_pred CCCEEECcCCc--CCccChhHhhccchhhhhhhccccc--------cceeecccccccc-cccccccccccccccccccc
Confidence 45555554333 3346677899999999999998874 2333 34567777 888888764 567766655
Q ss_pred CC-CCCceEEEcCCCCcccccc--cccCCCCCcEEeccCCCCCcccCC--CCCCC-CCCEEeccCCCCCccccccccCCC
Q 036657 345 FE-PENLIELNLPYSKVEQIWK--GEKKAFKLKYIDISHSQQLVRMLD--LSETP-NLERTNLLNCRDLACVRSSIENFN 418 (481)
Q Consensus 345 ~~-l~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~-~L~~L~L~~c~~l~~lp~~i~~L~ 418 (481)
|. +.+|++|+++++++...+. ....+..|..+...++ .+..++. +.+++ .++.|++.+ +.+..++....+..
T Consensus 99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~ 176 (242)
T d1xwdc1 99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNGT 176 (242)
T ss_dssp EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTTC
T ss_pred ccccccccccccchhhhccccccccccccccccccccccc-ccccccccccccccccceeeeccc-ccccccccccccch
Confidence 44 8999999999998886654 2445666666666655 4777765 55554 788899987 56788888877788
Q ss_pred CCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecCCCCCccCC-cccccceEe-eeCcCCccCCC
Q 036657 419 NLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFCVNLTEFPQ-ISGNIIELK-LWYTAIEEVPS 479 (481)
Q Consensus 419 ~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c~~L~~lp~-~~~~L~~L~-L~~~~l~~lP~ 479 (481)
++..+....++.++.+|... ++++|+.|+++++. ++.+|. .+.+|..|. ++.++++.+|+
T Consensus 177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~~l~~lp~ 240 (242)
T d1xwdc1 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT 240 (242)
T ss_dssp CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEESSSCSCC
T ss_pred hhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCCCCCcCCC
Confidence 88888766678899998754 49999999999964 899987 467776664 44566888886
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=9.8e-13 Score=113.55 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=52.2
Q ss_pred CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCcccccc-ccCCCCCCEEee
Q 036657 347 PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVRSS-IENFNNLSMLCF 425 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~-i~~L~~L~~L~l 425 (481)
+.+|++|+|++|+|+.+|.....+++|++|++++| .+..++.++.+++|++|++++| .+..+|.. +..+++|++|++
T Consensus 17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L 94 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELIL 94 (162)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEEC
T ss_pred cCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccCCcccCcchhhhhcccc-cccCCCcccccccccccccee
Confidence 34455555555555555443444555555555555 2555544555555555555553 24444433 234555555555
Q ss_pred eCCCCCccCCC--CC-CCCCCcEEEeecCCCCCccC
Q 036657 426 KGCESLRSFPR--GI-HFVSPITIDFSFCVNLTEFP 458 (481)
Q Consensus 426 ~~c~~l~~lp~--~~-~l~~L~~L~l~~c~~L~~lp 458 (481)
+++ .+..++. .+ .+++|++|++++|+ +..+|
T Consensus 95 ~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~ 128 (162)
T d1a9na_ 95 TNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKK 128 (162)
T ss_dssp CSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGST
T ss_pred ccc-cccccccccccccccccchhhcCCCc-ccccc
Confidence 542 3444332 11 25555555555543 44444
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1e-12 Score=113.45 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=61.0
Q ss_pred cccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccC
Q 036657 327 ELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLN 403 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~ 403 (481)
.+|.|++++|.++.+|..+. +.+|++|+|++|.++.++ ++..+++|++|++++|. +..+|. +..+++|++|++++
T Consensus 19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~L~L~~ 96 (162)
T d1a9na_ 19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTN 96 (162)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCS
T ss_pred cCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCccccccccccccceecc
Confidence 45555555555555554333 555555555555555552 35555556666666553 555544 34455566666655
Q ss_pred CCCCccccc--cccCCCCCCEEeeeCCCCCccCCCC----C-CCCCCcEEEe
Q 036657 404 CRDLACVRS--SIENFNNLSMLCFKGCESLRSFPRG----I-HFVSPITIDF 448 (481)
Q Consensus 404 c~~l~~lp~--~i~~L~~L~~L~l~~c~~l~~lp~~----~-~l~~L~~L~l 448 (481)
| .+..++. .+..+++|++|++++| .+..+|.. + .+++|+.|+-
T Consensus 97 N-~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 97 N-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp C-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred c-cccccccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCC
Confidence 3 3333332 3455566666666653 34444431 1 2555655553
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=3.1e-12 Score=105.14 Aligned_cols=114 Identities=21% Similarity=0.183 Sum_probs=91.6
Q ss_pred cEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCc
Q 036657 296 RLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLK 374 (481)
Q Consensus 296 r~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~ 374 (481)
|+|++++|. ...++ .+..++ +|++|++++|.++.+|+.+. +.+|++|++++|.++.+| ++..+++|+
T Consensus 1 R~L~Ls~n~---------l~~l~-~l~~l~-~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~ 68 (124)
T d1dcea3 1 RVLHLAHKD---------LTVLC-HLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQ 68 (124)
T ss_dssp SEEECTTSC---------CSSCC-CGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred CEEEcCCCC---------CCCCc-ccccCC-CCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccC
Confidence 688999888 34555 488888 99999999999999998776 999999999999999987 589999999
Q ss_pred EEeccCCCCCcccCC---CCCCCCCCEEeccCCCCCcccc---cc-ccCCCCCCEE
Q 036657 375 YIDISHSQQLVRMLD---LSETPNLERTNLLNCRDLACVR---SS-IENFNNLSML 423 (481)
Q Consensus 375 ~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~c~~l~~lp---~~-i~~L~~L~~L 423 (481)
+|++++|+ +..+|. ++.+++|++|+++++ .+...+ .. +..+++|+.|
T Consensus 69 ~L~l~~N~-i~~~~~~~~l~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 69 ELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp EEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred eEECCCCc-cCCCCCchhhcCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence 99999994 877775 678899999999984 343332 22 3446777665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.26 E-value=1.3e-11 Score=109.48 Aligned_cols=100 Identities=17% Similarity=0.260 Sum_probs=53.2
Q ss_pred ccccceeeccccCCC-CCCC-CC-CCCceEEEcCCCCcccccc-cccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEE
Q 036657 326 EELRYLHWHEYSLKM-LPFD-FE-PENLIELNLPYSKVEQIWK-GEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERT 399 (481)
Q Consensus 326 ~~Lr~L~l~~~~l~~-lP~~-~~-l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L 399 (481)
.++++|++++|.++. ++.. |. +.+|++|+|++|.+..++. .+..+++|++|++++|+ +..+|. |.++++|++|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L 107 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCccccc
Confidence 355666666665543 3222 33 5566666666665554432 34555566666666552 555544 5556666666
Q ss_pred eccCCCCCcccccc-ccCCCCCCEEeeeC
Q 036657 400 NLLNCRDLACVRSS-IENFNNLSMLCFKG 427 (481)
Q Consensus 400 ~L~~c~~l~~lp~~-i~~L~~L~~L~l~~ 427 (481)
+|++ +.+..+|+. +..+++|++|++++
T Consensus 108 ~L~~-N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 108 NLYD-NQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp ECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred ccCC-ccccccCHHHhcCCcccccccccc
Confidence 6655 344554433 45555566665554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.7e-11 Score=110.22 Aligned_cols=176 Identities=16% Similarity=0.207 Sum_probs=131.0
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCC-ccccccccccceeeccccCCC-CCCC-CC-CCCceEEEcCC-CCccccc-cc
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQ-GLEYLPEELRYLHWHEYSLKM-LPFD-FE-PENLIELNLPY-SKVEQIW-KG 366 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~-lP~~-~~-l~~L~~L~L~~-~~i~~lp-~~ 366 (481)
++++.|++++|. ...+|. .|..++ +|++|++++|.+.. +|.. |. +.++++|.+.. +++..++ ..
T Consensus 29 ~~l~~L~Ls~n~---------i~~l~~~~f~~l~-~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~ 98 (242)
T d1xwdc1 29 RNAIELRFVLTK---------LRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 98 (242)
T ss_dssp SCCSEEEEESCC---------CCEECTTTTTTCT-TCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred CCCCEEECcCCc---------CCccChhHhhccc-hhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence 579999999988 455665 578888 99999999998765 4443 44 88899998754 5676655 44
Q ss_pred ccCCCCCcEEeccCCCCCcccCCCCCCCCCCEEec--cCCCCCcccccc-ccCC-CCCCEEeeeCCCCCccCCCCC-CCC
Q 036657 367 EKKAFKLKYIDISHSQQLVRMLDLSETPNLERTNL--LNCRDLACVRSS-IENF-NNLSMLCFKGCESLRSFPRGI-HFV 441 (481)
Q Consensus 367 ~~~L~~L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L--~~c~~l~~lp~~-i~~L-~~L~~L~l~~c~~l~~lp~~~-~l~ 441 (481)
+..+++|++++++++. +...|.+..+.+++.+.. .++..+..++.. +..+ ..++.|++.+ +.+..++... ..+
T Consensus 99 ~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~ 176 (242)
T d1xwdc1 99 FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNGT 176 (242)
T ss_dssp EECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTTC
T ss_pred ccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccccccch
Confidence 7899999999999984 777777666666665543 223456666533 4444 4788899985 6788888765 477
Q ss_pred CCcEEEeecCCCCCccCCc----ccccceEeeeCcCCccCCCC
Q 036657 442 SPITIDFSFCVNLTEFPQI----SGNIIELKLWYTAIEEVPSS 480 (481)
Q Consensus 442 ~L~~L~l~~c~~L~~lp~~----~~~L~~L~L~~~~l~~lP~s 480 (481)
++.++....+++++++|.. +.+|+.|+|++|+|+.+|.+
T Consensus 177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~ 219 (242)
T d1xwdc1 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 219 (242)
T ss_dssp CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence 8878876666789999873 46889999999999999874
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=8.4e-12 Score=110.72 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=67.7
Q ss_pred ceeeccccCCCCCCCCCCCCceEEEcCCCCccc-cc-ccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 330 YLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQ-IW-KGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 330 ~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~-lp-~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
.++.+++.++++|..+ +.++++|+|++|+|+. ++ ..+..+++|++|++++|. +..++. +..+++|++|++++ +
T Consensus 12 ~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~Ls~-N 88 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGE-N 88 (192)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCS-C
T ss_pred EEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-cccccccccccccccceeeecc-c
Confidence 4455555666666554 3566666666666653 32 234566666666666663 444443 56666666666666 3
Q ss_pred CCcccccc-ccCCCCCCEEeeeCCCCCccCCCCC--CCCCCcEEEeecC
Q 036657 406 DLACVRSS-IENFNNLSMLCFKGCESLRSFPRGI--HFVSPITIDFSFC 451 (481)
Q Consensus 406 ~l~~lp~~-i~~L~~L~~L~l~~c~~l~~lp~~~--~l~~L~~L~l~~c 451 (481)
.+..+|+. |.++++|++|+|++ +.++.+|... ++++|++|+|+++
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccc
Confidence 45555443 55666666666665 4566665533 3666666666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.9e-12 Score=119.51 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=126.8
Q ss_pred hHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccc-cCCC--CCCCCC-CCCceEEEcCCC-Cc
Q 036657 286 PQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEY-SLKM--LPFDFE-PENLIELNLPYS-KV 360 (481)
Q Consensus 286 ~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~-~l~~--lP~~~~-l~~L~~L~L~~~-~i 360 (481)
...+.++++|+.|.+.++.+ ....+..+..++ +|++|++++| .++. +..-+. +++|++|++++| .+
T Consensus 64 ~~l~~~c~~L~~L~L~~~~l--------~~~~~~~l~~~~-~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~ 134 (284)
T d2astb2 64 HGILSQCSKLQNLSLEGLRL--------SDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134 (284)
T ss_dssp HHHHTTBCCCSEEECTTCBC--------CHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred HHHHHhCCCcccccccccCC--------CcHHHHHHhcCC-CCcCccccccccccccccchhhHHHHhcccccccccccc
Confidence 34578899999999998864 333445566777 8999999986 3432 222222 689999999986 44
Q ss_pred c--ccccccc-CCCCCcEEeccCCC-CCcc--cCC-CCCCCCCCEEeccCCCCCc-cccccccCCCCCCEEeeeCCCCCc
Q 036657 361 E--QIWKGEK-KAFKLKYIDISHSQ-QLVR--MLD-LSETPNLERTNLLNCRDLA-CVRSSIENFNNLSMLCFKGCESLR 432 (481)
Q Consensus 361 ~--~lp~~~~-~L~~L~~L~Ls~~~-~l~~--lp~-~~~l~~L~~L~L~~c~~l~-~lp~~i~~L~~L~~L~l~~c~~l~ 432 (481)
. .+...+. ..++|+.|+++++. .+.. +.. +.++++|++|++++|..+. ..+..++++++|++|++++|+.+.
T Consensus 135 ~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~ 214 (284)
T d2astb2 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214 (284)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence 3 2223333 35789999999863 2322 223 3568999999999998765 355678899999999999998775
Q ss_pred cCC-CCC-CCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccC
Q 036657 433 SFP-RGI-HFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEV 477 (481)
Q Consensus 433 ~lp-~~~-~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~l 477 (481)
.-. ..+ ++++|+.|+++||-.-..++.....+..|.+.++.++.+
T Consensus 215 ~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i~~~~ls~~ 261 (284)
T d2astb2 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 261 (284)
T ss_dssp GGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred hHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccccccCccCCCC
Confidence 421 122 489999999999854444554445666777788777654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.02 E-value=2.9e-12 Score=114.33 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=82.6
Q ss_pred ChHhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccc
Q 036657 285 NPQAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQI 363 (481)
Q Consensus 285 ~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~l 363 (481)
.+..+..+++|+.|++++|. ...++ .+..++ +|++|++++|.++.+|..+. +.+|++|++++|+++.+
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~---------I~~i~-~l~~l~-~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l 108 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNN---------IEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEE---------ESCCC-CHHHHT-TCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH
T ss_pred hhhHHhcccccceeECcccC---------CCCcc-cccCCc-cccChhhccccccccccccccccccccccccccccccc
Confidence 35678888999999998876 34454 477777 88888888888888876554 56788888888888876
Q ss_pred cccccCCCCCcEEeccCCCCCcccCC---CCCCCCCCEEeccCCC
Q 036657 364 WKGEKKAFKLKYIDISHSQQLVRMLD---LSETPNLERTNLLNCR 405 (481)
Q Consensus 364 p~~~~~L~~L~~L~Ls~~~~l~~lp~---~~~l~~L~~L~L~~c~ 405 (481)
+ ++..+++|++|++++|. +..+++ ++.+++|+.|+++++.
T Consensus 109 ~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred c-cccccccccccccccch-hccccccccccCCCccceeecCCCc
Confidence 4 47778888888888884 666653 6788888888888753
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.2e-11 Score=114.95 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=121.1
Q ss_pred cCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCC-CCCCC-CCCCceEEEcCCC-Cccc--ccc
Q 036657 291 NMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKM-LPFDF-EPENLIELNLPYS-KVEQ--IWK 365 (481)
Q Consensus 291 ~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-lP~~~-~l~~L~~L~L~~~-~i~~--lp~ 365 (481)
...+|+.|+++++.+. ...++..+..++ +|++|+++++++.. .+..+ .+++|++|+++++ .++. +..
T Consensus 44 ~~~~L~~LdLs~~~i~-------~~~l~~l~~~c~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~ 115 (284)
T d2astb2 44 SPFRVQHMDLSNSVIE-------VSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115 (284)
T ss_dssp CCBCCCEEECTTCEEC-------HHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred cCCCCCEEECCCCccC-------HHHHHHHHHhCC-CcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch
Confidence 4568999999876530 122344466677 99999999998653 22233 3789999999985 5652 233
Q ss_pred cccCCCCCcEEeccCCCCCcc--cCC-CC-CCCCCCEEeccCCC-CCc--cccccccCCCCCCEEeeeCCCCCccC-CCC
Q 036657 366 GEKKAFKLKYIDISHSQQLVR--MLD-LS-ETPNLERTNLLNCR-DLA--CVRSSIENFNNLSMLCFKGCESLRSF-PRG 437 (481)
Q Consensus 366 ~~~~L~~L~~L~Ls~~~~l~~--lp~-~~-~l~~L~~L~L~~c~-~l~--~lp~~i~~L~~L~~L~l~~c~~l~~l-p~~ 437 (481)
-...+++|++|++++|..+.. ++. +. ..++|+.|++++|. .+. .+..-..++++|++|++++|..++.- +..
T Consensus 116 l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~ 195 (284)
T d2astb2 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 195 (284)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh
Confidence 346789999999999876643 222 22 34789999999974 232 24444567899999999999887632 222
Q ss_pred C-CCCCCcEEEeecCCCCCcc--CC--cccccceEeeeCc
Q 036657 438 I-HFVSPITIDFSFCVNLTEF--PQ--ISGNIIELKLWYT 472 (481)
Q Consensus 438 ~-~l~~L~~L~l~~c~~L~~l--p~--~~~~L~~L~L~~~ 472 (481)
+ ++++|++|++++|..+..- .. ..++|+.|+++++
T Consensus 196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 3 4899999999999877531 11 2457899999876
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=98.94 E-value=6.3e-09 Score=99.71 Aligned_cols=165 Identities=19% Similarity=0.202 Sum_probs=119.6
Q ss_pred CCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCCCCCCCCCCCceEEEcCCCCcccccccccCCCC
Q 036657 293 SNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKMLPFDFEPENLIELNLPYSKVEQIWKGEKKAFK 372 (481)
Q Consensus 293 ~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 372 (481)
.+|+.|+++++. ...+|+. ++ +|++|++++|.++++|.. +.+|++|++.+|+++.++.- .+.
T Consensus 38 ~~l~~LdLs~~~---------L~~lp~~---~~-~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~ 99 (353)
T d1jl5a_ 38 RQAHELELNNLG---------LSSLPEL---PP-HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPL 99 (353)
T ss_dssp HTCSEEECTTSC---------CSCCCSC---CT-TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTT
T ss_pred cCCCEEEeCCCC---------CCCCCCC---CC-CCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh---ccc
Confidence 579999999887 4567753 34 999999999999999976 46999999999999887642 246
Q ss_pred CcEEeccCCCCCcccCCCCCCCCCCEEeccCCCCCcccc-------------------ccccCCCCCCEEeeeCCC----
Q 036657 373 LKYIDISHSQQLVRMLDLSETPNLERTNLLNCRDLACVR-------------------SSIENFNNLSMLCFKGCE---- 429 (481)
Q Consensus 373 L~~L~Ls~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp-------------------~~i~~L~~L~~L~l~~c~---- 429 (481)
|++|++++|. +..+|.++.+++|++|+++++. +...| ..++.++.++.|.+.++.
T Consensus 100 L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~ 177 (353)
T d1jl5a_ 100 LEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL 177 (353)
T ss_dssp CCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred cccccccccc-cccccchhhhccceeecccccc-ccccccccccccchhhccccccccccccccccceeccccccccccc
Confidence 9999999994 9999999999999999998864 22222 234556667777665421
Q ss_pred ---------------CCccCCCCCCCCCCcEEEeecCCCCCccCCcccccceEeeeCcCCccCC
Q 036657 430 ---------------SLRSFPRGIHFVSPITIDFSFCVNLTEFPQISGNIIELKLWYTAIEEVP 478 (481)
Q Consensus 430 ---------------~l~~lp~~~~l~~L~~L~l~~c~~L~~lp~~~~~L~~L~L~~~~l~~lP 478 (481)
.+..+|....++.|+.++++++. ...+|....++..+.+..+.+...|
T Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (353)
T d1jl5a_ 178 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLP 240 (353)
T ss_dssp CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSCCC
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 12223333347788888888754 6667776667777766666665444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.92 E-value=2.1e-12 Score=115.26 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=76.5
Q ss_pred ecCCccccccccccceeeccccCCCCCCCCC-CCCceEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCCCCCCC
Q 036657 316 HLDQGLEYLPEELRYLHWHEYSLKMLPFDFE-PENLIELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLDLSETP 394 (481)
Q Consensus 316 ~l~~~l~~l~~~Lr~L~l~~~~l~~lP~~~~-l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~~~~l~ 394 (481)
.++..+..++ +|++|++++|.++.++. +. +.+|++|++++|.++.+|.....+++|++|++++| .+..++.+..++
T Consensus 39 ~l~~sl~~L~-~L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~~~~l~ 115 (198)
T d1m9la_ 39 KMDATLSTLK-ACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIEKLV 115 (198)
T ss_dssp CCHHHHHHTT-TCCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECCCHHHHHHHH
T ss_pred hhhhHHhccc-ccceeECcccCCCCccc-ccCCccccChhhcccccccccccccccccccccccccc-cccccccccccc
Confidence 3445666677 78888888888777763 43 77888888888877777665555667788888777 366666677777
Q ss_pred CCCEEeccCCCCCcccc--ccccCCCCCCEEeeeCC
Q 036657 395 NLERTNLLNCRDLACVR--SSIENFNNLSMLCFKGC 428 (481)
Q Consensus 395 ~L~~L~L~~c~~l~~lp--~~i~~L~~L~~L~l~~c 428 (481)
+|++|++++| .+..++ ..+..+++|+.|+++++
T Consensus 116 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred cccccccccc-hhccccccccccCCCccceeecCCC
Confidence 7888888773 455554 24677777777777764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=6.2e-09 Score=88.49 Aligned_cols=99 Identities=17% Similarity=0.051 Sum_probs=54.4
Q ss_pred eEEEcCCCCcccccccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEeeeC
Q 036657 351 IELNLPYSKVEQIWKGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVR-SSIENFNNLSMLCFKG 427 (481)
Q Consensus 351 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp-~~i~~L~~L~~L~l~~ 427 (481)
.+++..++++...|..+..+++|+.|+++++..++.++. |.++++|+.|++++ +.+..++ ..|..+++|++|+|++
T Consensus 11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccceeccC
Confidence 345555555555555555556666666655444555553 55566666666665 3455553 2355566666666664
Q ss_pred CCCCccCCCCC-CCCCCcEEEeecC
Q 036657 428 CESLRSFPRGI-HFVSPITIDFSFC 451 (481)
Q Consensus 428 c~~l~~lp~~~-~l~~L~~L~l~~c 451 (481)
+.++.+|... ...+|+.|+|+++
T Consensus 90 -N~l~~l~~~~~~~~~l~~L~L~~N 113 (156)
T d2ifga3 90 -NALESLSWKTVQGLSLQELVLSGN 113 (156)
T ss_dssp -SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred -CCCcccChhhhccccccccccCCC
Confidence 4566665543 2345666666653
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.5e-08 Score=83.69 Aligned_cols=95 Identities=21% Similarity=0.154 Sum_probs=46.4
Q ss_pred eeeccccCCCCCCCCC-CCCceEEEcCCC-Cccccccc-ccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCC
Q 036657 331 LHWHEYSLKMLPFDFE-PENLIELNLPYS-KVEQIWKG-EKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCR 405 (481)
Q Consensus 331 L~l~~~~l~~lP~~~~-l~~L~~L~L~~~-~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~ 405 (481)
++..++.+.+.|..+. +.+|++|++.++ .++.++.. +..+++|+.|++++| .++.++. |..+++|++|+|++ +
T Consensus 13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~-N 90 (156)
T d2ifga3 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-N 90 (156)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-S
T ss_pred EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccC-C
Confidence 3334444444444443 455555555433 35555332 455555555555555 2555543 45555555555555 3
Q ss_pred CCccccccccCCCCCCEEeeeC
Q 036657 406 DLACVRSSIENFNNLSMLCFKG 427 (481)
Q Consensus 406 ~l~~lp~~i~~L~~L~~L~l~~ 427 (481)
.+..+|.++....+|++|++++
T Consensus 91 ~l~~l~~~~~~~~~l~~L~L~~ 112 (156)
T d2ifga3 91 ALESLSWKTVQGLSLQELVLSG 112 (156)
T ss_dssp CCSCCCSTTTCSCCCCEEECCS
T ss_pred CCcccChhhhccccccccccCC
Confidence 4455554443334455555554
|
| >d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 2, TLR2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.1e-07 Score=78.10 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=46.2
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHH-HHhHhhCCCeEEeEEeecCCcccc
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKI-LDCKKMNGQIVIPVFYQVDPSDVR 58 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i-~~~~~~~~~~v~pvfy~v~p~~v~ 58 (481)
++.+||+.|+..|+|+|++|..|.||..|+... .+..+.++..++||+++--|.+..
T Consensus 53 ~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~ 110 (149)
T d1fyxa_ 53 NIIDSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHhCCEEEEEEcCccccccchHHHHHHHHHHHHHcCCceEEEEEeccCchhhc
Confidence 578899999999999999999999999999654 344456778999999975444433
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.10 E-value=4.1e-07 Score=87.13 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=111.5
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCC---------CCC------CCCCCCce
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKM---------LPF------DFEPENLI 351 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~---------lP~------~~~l~~L~ 351 (481)
..+..+++|+.|++++|.+. ......+...+...+ +|+.|++++|.+.. +.. ......|+
T Consensus 87 ~~l~~~~~L~~L~L~~n~i~----~~~~~~l~~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~ 161 (344)
T d2ca6a1 87 QALLKCPKLHTVRLSDNAFG----PTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 161 (344)
T ss_dssp HHHTTCTTCCEEECCSCCCC----TTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHhhCCCcccccccccccc----cccccchhhhhcccc-cchheecccccccccccccccccccccccccccccCcccc
Confidence 44566778888888877641 111122333444455 78888887776421 000 01245788
Q ss_pred EEEcCCCCcc-----cccccccCCCCCcEEeccCCCCCcc------cCC-CCCCCCCCEEeccCCCCC----cccccccc
Q 036657 352 ELNLPYSKVE-----QIWKGEKKAFKLKYIDISHSQQLVR------MLD-LSETPNLERTNLLNCRDL----ACVRSSIE 415 (481)
Q Consensus 352 ~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~------lp~-~~~l~~L~~L~L~~c~~l----~~lp~~i~ 415 (481)
.|+++++.+. .+...+...++|+.|++++|. +.. +.. +...++|++|++++|..- ..+...+.
T Consensus 162 ~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~ 240 (344)
T d2ca6a1 162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240 (344)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred eeecccccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccccccccccccccccc
Confidence 8888887665 234446677888888888884 432 222 667788888988876421 22445577
Q ss_pred CCCCCCEEeeeCCCCCcc-----CCCC---CCCCCCcEEEeecCCCCCc-----cCC----cccccceEeeeCcCCcc
Q 036657 416 NFNNLSMLCFKGCESLRS-----FPRG---IHFVSPITIDFSFCVNLTE-----FPQ----ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 416 ~L~~L~~L~l~~c~~l~~-----lp~~---~~l~~L~~L~l~~c~~L~~-----lp~----~~~~L~~L~L~~~~l~~ 476 (481)
..++|++|++++|. +.. +-.. ...++|++|++++|. +.. +.. -.++|++|+|++|.+.+
T Consensus 241 ~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 241 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 78888999988763 432 1111 124678899998864 543 222 13467889998888855
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.92 E-value=1e-06 Score=84.28 Aligned_cols=206 Identities=16% Similarity=0.139 Sum_probs=125.6
Q ss_pred cceeeeeecCCcccc--cccChHhhccCCCCcEEEEeCCCCCCCccc--CcceecCCccccccccccceeeccccCCCC-
Q 036657 267 DKVEGIFLDLSKIND--IHLNPQAFANMSNLRLLKFYMPKHNDIPIM--SSKLHLDQGLEYLPEELRYLHWHEYSLKML- 341 (481)
Q Consensus 267 ~~v~~i~l~~~~~~~--~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l- 341 (481)
..++.+.+..+.... ...-...+...++|+.|.+.++........ .....+...+...+ +|+.|++++|.+...
T Consensus 31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~ 109 (344)
T d2ca6a1 31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTA 109 (344)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTTT
T ss_pred CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCC-Cccccccccccccccc
Confidence 456666655432211 111234567788999999987653100000 00011222344455 899999998876542
Q ss_pred ----CCCCC-CCCceEEEcCCCCccc-----ccc---------cccCCCCCcEEeccCCCCCcc-----cCC-CCCCCCC
Q 036657 342 ----PFDFE-PENLIELNLPYSKVEQ-----IWK---------GEKKAFKLKYIDISHSQQLVR-----MLD-LSETPNL 396 (481)
Q Consensus 342 ----P~~~~-l~~L~~L~L~~~~i~~-----lp~---------~~~~L~~L~~L~Ls~~~~l~~-----lp~-~~~l~~L 396 (481)
...+. .++|++|++++|.+.. +.. .....+.|+.++++++. +.. +.. +...++|
T Consensus 110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L 188 (344)
T d2ca6a1 110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLL 188 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTC
T ss_pred ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc-ccccccccccchhhhhhhh
Confidence 22222 6789999999987642 111 12457789999998874 332 222 4567889
Q ss_pred CEEeccCCCCCc-----cccccccCCCCCCEEeeeCCCCCcc-----CCCCC-CCCCCcEEEeecCCCCCcc--------
Q 036657 397 ERTNLLNCRDLA-----CVRSSIENFNNLSMLCFKGCESLRS-----FPRGI-HFVSPITIDFSFCVNLTEF-------- 457 (481)
Q Consensus 397 ~~L~L~~c~~l~-----~lp~~i~~L~~L~~L~l~~c~~l~~-----lp~~~-~l~~L~~L~l~~c~~L~~l-------- 457 (481)
++|++++|.--. .+...+...++|+.|+++++ .+.. +...+ ..++|++|++++|. +..-
T Consensus 189 ~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~ 266 (344)
T d2ca6a1 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDA 266 (344)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCc-cCchhhHHHHHH
Confidence 999999975321 13345778899999999975 4432 22233 37899999999986 5431
Q ss_pred -CC-cccccceEeeeCcCCcc
Q 036657 458 -PQ-ISGNIIELKLWYTAIEE 476 (481)
Q Consensus 458 -p~-~~~~L~~L~L~~~~l~~ 476 (481)
+. ...+|++|++++|.|+.
T Consensus 267 l~~~~~~~L~~L~ls~N~i~~ 287 (344)
T d2ca6a1 267 FSKLENIGLQTLRLQYNEIEL 287 (344)
T ss_dssp HHTCSSCCCCEEECCSSCCBH
T ss_pred hhhccCCCCCEEECCCCcCCh
Confidence 11 12467999999998854
|
| >d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Toll/Interleukin receptor TIR domain family: Toll/Interleukin receptor TIR domain domain: Toll-like receptor 1, TLR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=1.1e-06 Score=74.48 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=45.7
Q ss_pred hHHHHhhhCCEEEEEEcCCCcchhhHHHHHHHHHHhH-hhCCCeEEeEEeecCC
Q 036657 2 AISNAIETSDISIIIFSKDYASSKWCLNELVKILDCK-KMNGQIVIPVFYQVDP 54 (481)
Q Consensus 2 ~~~~ai~~s~~~ivv~s~~ya~s~~cl~el~~i~~~~-~~~~~~v~pvfy~v~p 54 (481)
++.+||+.|+..|+|+|++|..|.||..|+...+... +.++..++||+++--|
T Consensus 58 ~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~~a~~~~~~~~~~~lIpV~l~~~~ 111 (161)
T d1fyva_ 58 NIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIP 111 (161)
T ss_dssp HHHHHHHHEEEEEEEESHHHHHHTSHHHHHHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred HHHHHHHhCCEEEEEecCccccChHHHHHHHHHHHHHHHcCCCceeEEEEecCc
Confidence 5789999999999999999999999999999888764 4556789999997433
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=1e-06 Score=74.86 Aligned_cols=77 Identities=23% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCCceEEEcCCCCccccc---ccccCCCCCcEEeccCCCCCcccCC--CCCCCCCCEEeccCCCCCcccc-------ccc
Q 036657 347 PENLIELNLPYSKVEQIW---KGEKKAFKLKYIDISHSQQLVRMLD--LSETPNLERTNLLNCRDLACVR-------SSI 414 (481)
Q Consensus 347 l~~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~Ls~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~~lp-------~~i 414 (481)
+.+|++|+|++|+|+.++ ..+..+++|+.|++++| .+..+++ ..+..+|+.|+++++.-..... .-+
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~ 142 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence 456777777777666543 33556777777777777 3666665 2233457777777643222111 114
Q ss_pred cCCCCCCEEe
Q 036657 415 ENFNNLSMLC 424 (481)
Q Consensus 415 ~~L~~L~~L~ 424 (481)
..+++|+.||
T Consensus 143 ~~~P~L~~LD 152 (162)
T d1koha1 143 ERFPKLLRLD 152 (162)
T ss_dssp TTSTTCCEET
T ss_pred HHCCCCCEEC
Confidence 4566777665
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=3.8e-05 Score=64.68 Aligned_cols=56 Identities=23% Similarity=0.150 Sum_probs=24.2
Q ss_pred cccceeeccccCCCCCCC---CC-CCCceEEEcCCCCccccccc-ccCCCCCcEEeccCCC
Q 036657 327 ELRYLHWHEYSLKMLPFD---FE-PENLIELNLPYSKVEQIWKG-EKKAFKLKYIDISHSQ 382 (481)
Q Consensus 327 ~Lr~L~l~~~~l~~lP~~---~~-l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~ 382 (481)
+|++|++++|.++.++.. +. +++|++|++++|.++.++.- .....+|+.|++++|.
T Consensus 66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence 444444444444443321 11 44555555555555544331 1122345555555553
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00015 Score=70.70 Aligned_cols=103 Identities=16% Similarity=0.252 Sum_probs=65.7
Q ss_pred CCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCC-----CCCCC-CCCCceEEEcCCCCccc-----
Q 036657 294 NLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKM-----LPFDF-EPENLIELNLPYSKVEQ----- 362 (481)
Q Consensus 294 ~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lP~~~-~l~~L~~L~L~~~~i~~----- 362 (481)
+|+.|+++++.+. ...+..-+..++ +++.|++++|.++. ++..+ ..++|++|+|++|.++.
T Consensus 3 ~l~~ld~~~~~i~-------~~~~~~l~~~l~-~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~ 74 (460)
T d1z7xw1 3 DIQSLDIQCEELS-------DARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 74 (460)
T ss_dssp EEEEEEEESCCCC-------HHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred CCCEEEeeCCcCC-------hHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence 6788899887741 222223334445 78888888887652 22222 26678888888887753
Q ss_pred ccccccC-CCCCcEEeccCCCCCcc-----cCC-CCCCCCCCEEeccCCC
Q 036657 363 IWKGEKK-AFKLKYIDISHSQQLVR-----MLD-LSETPNLERTNLLNCR 405 (481)
Q Consensus 363 lp~~~~~-L~~L~~L~Ls~~~~l~~-----lp~-~~~l~~L~~L~L~~c~ 405 (481)
+...+.. ..+|++|++++|. ++. ++. +..+++|++|++++|.
T Consensus 75 l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 75 VLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence 3333332 3478888888884 544 333 6778888888888754
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.00032 Score=68.13 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=62.0
Q ss_pred HhhccCCCCcEEEEeCCCCCCCcccCcceecCCccccccccccceeeccccCCC-----CCCCCC--CCCceEEEcCCCC
Q 036657 287 QAFANMSNLRLLKFYMPKHNDIPIMSSKLHLDQGLEYLPEELRYLHWHEYSLKM-----LPFDFE--PENLIELNLPYSK 359 (481)
Q Consensus 287 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lP~~~~--l~~L~~L~L~~~~ 359 (481)
..+..+++|++|.+.+|.+. +.....+...+...+ +|++|++++|+++. +...+. ..+|++|+|++|.
T Consensus 21 ~l~~~l~~l~~L~L~~~~i~----~~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 95 (460)
T d1z7xw1 21 ELLPLLQQCQVVRLDDCGLT----EARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95 (460)
T ss_dssp HHHHHHTTCSEEEEESSCCC----HHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred HHHHhCCCCCEEEeCCCCCC----HHHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC
Confidence 44677888899999888741 001123444566677 89999998887642 232322 3478999999888
Q ss_pred ccc-----ccccccCCCCCcEEeccCCC
Q 036657 360 VEQ-----IWKGEKKAFKLKYIDISHSQ 382 (481)
Q Consensus 360 i~~-----lp~~~~~L~~L~~L~Ls~~~ 382 (481)
++. ++..+..+++|++|++++|.
T Consensus 96 it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 96 LTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred ccccccccccchhhcccccccccccccc
Confidence 763 45567788899999988874
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.11 E-value=0.0076 Score=50.14 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=7.8
Q ss_pred cccCCCCCCEEeeeC
Q 036657 413 SIENFNNLSMLCFKG 427 (481)
Q Consensus 413 ~i~~L~~L~~L~l~~ 427 (481)
.+..-++|+.|+++.
T Consensus 126 ~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 126 AIEENESLLRVGISF 140 (167)
T ss_dssp HHHHCSSCCEEECCC
T ss_pred HHHhCCCccEeeCcC
Confidence 344445566665543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.26 E-value=0.028 Score=46.44 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCceEEEcCCC-Ccc-----cccccccCCCCCcEEeccCCCCCccc--CC----CCCCCCCCEEeccCCCCCc----ccc
Q 036657 348 ENLIELNLPYS-KVE-----QIWKGEKKAFKLKYIDISHSQQLVRM--LD----LSETPNLERTNLLNCRDLA----CVR 411 (481)
Q Consensus 348 ~~L~~L~L~~~-~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~l--p~----~~~l~~L~~L~L~~c~~l~----~lp 411 (481)
++|++|+|+++ .+. .+-..+...++|+.|++++|. +..- .. +...++|++|++++|..-. .+-
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 45667777653 333 233345566778888887773 4321 11 3345677788887764211 123
Q ss_pred ccccCCCCCCEEeeeCCCCCccCC--------CCC-CCCCCcEEEeec
Q 036657 412 SSIENFNNLSMLCFKGCESLRSFP--------RGI-HFVSPITIDFSF 450 (481)
Q Consensus 412 ~~i~~L~~L~~L~l~~c~~l~~lp--------~~~-~l~~L~~L~l~~ 450 (481)
..+..-++|++|+++++ ....+. ..+ .-++|+.|+++.
T Consensus 94 ~aL~~n~sL~~L~l~~n-~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGISF 140 (167)
T ss_dssp HHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHhCCcCCEEECCCC-cCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence 34556677888888753 222222 111 146677777755
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=88.50 E-value=0.056 Score=44.34 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=15.6
Q ss_pred CceEEEcCCCCccc-----ccccccCCCCCcEEeccCC
Q 036657 349 NLIELNLPYSKVEQ-----IWKGEKKAFKLKYIDISHS 381 (481)
Q Consensus 349 ~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~~ 381 (481)
+|++|++++|.+.. +-..+...+.|+.+++++|
T Consensus 47 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 47 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence 45555555554431 2222344455555555554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=87.96 E-value=0.11 Score=42.57 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=57.0
Q ss_pred CCceEEEcCCC-Ccc-----cccccccCCCCCcEEeccCCCCCcccC-----C-CCCCCCCCEEeccCCCCC----cccc
Q 036657 348 ENLIELNLPYS-KVE-----QIWKGEKKAFKLKYIDISHSQQLVRML-----D-LSETPNLERTNLLNCRDL----ACVR 411 (481)
Q Consensus 348 ~~L~~L~L~~~-~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~lp-----~-~~~l~~L~~L~L~~c~~l----~~lp 411 (481)
++|++|++.++ .++ .+-..+...++|+.|++++|. +..-. . +...++++.+++++|..- ..+-
T Consensus 17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~ 95 (166)
T d1io0a_ 17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 95 (166)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence 46677777653 343 233445677888888888873 43211 1 345677888888776432 2233
Q ss_pred ccccCCCCCCEEeeeCCC-CCcc-----CCCCC-CCCCCcEEEeec
Q 036657 412 SSIENFNNLSMLCFKGCE-SLRS-----FPRGI-HFVSPITIDFSF 450 (481)
Q Consensus 412 ~~i~~L~~L~~L~l~~c~-~l~~-----lp~~~-~l~~L~~L~l~~ 450 (481)
..+...++|+.++|..+. .+.. +...+ ..++|++|+++.
T Consensus 96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 456666777776665432 2211 11112 256677777654
|