Citrus Sinensis ID: 036717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580
Protein Sequence
KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRRL
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccEEEcccccccEEccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccEEccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEcccccccccccccEEEcccccccEEccccccccccccEEEccccEEEEEccccccccccccEEEccccccEEEccccccccccccEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHHccccccEEEcccccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccHHHHccccEEEEEEEcccccccccHHcccccEEEcccccccccccHHHHccccccccccccccccccccHHHcccccccEEccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEHHEEHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccccccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEccccccccccHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHccccccccccccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
kflrhqfnlkyldlshnklagnfptwllenntKLEVLYLINNSFSGFQLTGAQHGLlsldisknsftgelpqnMGIVLQKLVYMNIsknsfegnipssiakmqglrfldvstnnfagELSQSLVTNCFSLIWLdlsnnnfdgqifpnymnlTQLQLLYldnnhfsgkikdgllrSTELMVLDISnnrlsghipswmgNFSYLQILSMSKNllegnipvqfndlldLEILNIsennlsgsmistlnlSSVEHLYLQNnalggsipntffrgsaletldlrdnnfsgriphqinEHSNLRALLLRANylqgpiphqlcrlrklgimdlshnrlygsipacitnslfwkvgnESLYQLDeegadvgnvdirdyYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHmagldlssneltgnipseigdlqnihglnlsynflsgsipesfsnlkMIESLDlshnklngqippqltelhslskfdvsynnlsgpipdkeqfstfdessyrgnlhlcgppinksctnlpkllepsskgaedesaVDMVAFYWSFVASYVTLMLGLLAILWinpywrrl
Flexible Loop (DISEMBL)
KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTvqlrldesdlrWLVKQVEvnfmtknryESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILwinpywrrl
Low Complexity Region (SEG)
KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSnlralllranYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRRL
Disordered region (IsUnstruct)
***RHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLD**********************FDVSY*********************RGNLHLCGPPIN*********************AVDMVAFYWSFVASYVTLMLGLLAILWINPYWR**
Disordered Region (DISOPRED)
KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPI**************************VAFYWSFVASYVTLMLGLLAILWINPYWRRL
Disordered Region (DISEMBL)
KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLE********ESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRRL
Disordered Region (DISPRO)
*FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC*****************SAVDMVAFYWSFVASYVTLMLGLLAILWINPYW***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	580	2.2.26 [Sep-21-2011]
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.812	0.393	0.352	9e-60
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.839	0.389	0.321	3e-59
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.958	0.476	0.301	3e-58
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.865	0.458	0.326	4e-57
Q9LJF3	1164	Receptor-like protein kin	no	no	0.962	0.479	0.318	3e-56
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.95	0.535	0.313	5e-55
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.939	0.521	0.308	1e-54
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.848	0.485	0.321	2e-53
Q9LHP4	1141	Receptor-like protein kin	no	no	0.868	0.441	0.316	4e-53
O65440	992	Leucine-rich repeat recep	no	no	0.872	0.510	0.317	5e-53

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  231 bits (590), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 185/525 (35%), Positives = 269/525 (51%), Gaps = 54/525 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +L+YL L+ NK  G  P +                      L+GA   L  LD+S N F 
Sbjct: 292 SLQYLSLAENKFTGEIPDF----------------------LSGACDTLTGLDLSGNHFY 329

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIP-SSIAKMQGLRFLDVSTNNFAGELSQSLVTN 126
           G +P   G     L  + +S N+F G +P  ++ KM+GL+ LD+S N F+GEL +SL   
Sbjct: 330 GAVPPFFGSC-SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 388

Query: 127 CFSLIWLDLSNNNFDGQIFPNYMNLTQ--LQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
             SL+ LDLS+NNF G I PN     +  LQ LYL NN F+GKI   L   +EL+ L +S
Sbjct: 389 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 448

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
            N LSG IPS +G+ S L+ L +  N+LEG IP +   +  LE L +  N+L+G + S L
Sbjct: 449 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 508

Query: 245 -NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
            N +++  + L NN L G IP    R   L  L L +N+FSG IP ++ +  +L  L L 
Sbjct: 509 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 568

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
            N   G IP  +   ++ G   ++ N + G     I N    K  + +   L+ +G    
Sbjct: 569 TNLFNGTIPAAM--FKQSG--KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG---- 620

Query: 364 NVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEH---MAGLDLSSN 420
                          +    L  L  +   N +T   Y  +     ++   M  LD+S N
Sbjct: 621 ---------------IRSEQLNRLSTRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYN 664

Query: 421 ELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 480
            L+G IP EIG +  +  LNL +N +SGSIP+   +L+ +  LDLS NKL+G+IP  ++ 
Sbjct: 665 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 724

Query: 481 LHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINK 525
           L  L++ D+S NNLSGPIP+  QF TF  + +  N  LCG P+ +
Sbjct: 725 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 769

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  230 bits (586), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 183/569 (32%), Positives = 279/569 (49%), Gaps = 82/569 (14%)

Query: 12  LDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG---FQLTGAQHGLLSLDISKNSFTG 68
           L L++N L+G+ P  +  NNT LE L L     SG    +L+  Q  L  LD+S NS  G
Sbjct: 316 LVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQ-SLKQLDLSNNSLAG 374

Query: 69  ELPQNM-----------------GIV------LQKLVYMNISKNSFEGNIPSSIAKMQGL 105
            +P+ +                 G +      L  L ++ +  N+ EG +P  I+ ++ L
Sbjct: 375 SIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKL 434

Query: 106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS 165
             L +  N F+GE+ Q  + NC SL  +D+  N+F+G+I P+   L +L LL+L  N   
Sbjct: 435 EVLFLYENRFSGEIPQE-IGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELV 493

Query: 166 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD 225
           G +   L    +L +LD+++N+LSG IPS  G    L+ L +  N L+GN+P     L +
Sbjct: 494 GGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRN 553

Query: 226 LEILNISENNLSGSMISTLNLSS------------------------VEHLYLQNNALGG 261
           L  +N+S N L+G++      SS                        ++ L L  N L G
Sbjct: 554 LTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTG 613

Query: 262 SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKL 321
            IP T  +   L  LD+  N  +G IP Q+     L  + L  N+L GPIP  L +L +L
Sbjct: 614 KIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQL 673

Query: 322 GIMDLSHNRLYGSIPACITNSLFWKV----GNESLYQLDEEGADVGNVDIRDYYNSTVQL 377
           G + LS N+   S+P  + N     V    GN     + +E  ++G +++         L
Sbjct: 674 GELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNV---------L 724

Query: 378 RLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIH 437
            LD++     + Q     M K          L  +  L LS N LTG IP EIG LQ++ 
Sbjct: 725 NLDKNQFSGSLPQA----MGK----------LSKLYELRLSRNSLTGEIPVEIGQLQDLQ 770

Query: 438 -GLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSG 496
             L+LSYN  +G IP +   L  +E+LDLSHN+L G++P  + ++ SL   +VS+NNL G
Sbjct: 771 SALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGG 830

Query: 497 PIPDKEQFSTFDESSYRGNLHLCGPPINK 525
            +  K+QFS +   S+ GN  LCG P+++
Sbjct: 831 KL--KKQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  226 bits (577), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 175/580 (30%), Positives = 284/580 (48%), Gaps = 24/580 (4%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG----FQLTGAQHGLLSLDISK 63
           NL +  LS N L+G+     L N   LE L +  N+ +G     +  G+   L  L ++ 
Sbjct: 227 NLTFFSLSQNNLSGDKFPITLPNCKFLETLNISRNNLAGKIPNGEYWGSFQNLKQLSLAH 286

Query: 64  NSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL 123
           N  +GE+P  + ++ + LV +++S N+F G +PS       L+ L++  N  +G+   ++
Sbjct: 287 NRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTV 346

Query: 124 VTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD- 182
           V+    + +L ++ NN  G +  +  N + L++L L +N F+G +  G        VL+ 
Sbjct: 347 VSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEK 406

Query: 183 --ISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
             I+NN LSG +P  +G    L+ + +S N L G IP +   L +L  L +  NNL+G++
Sbjct: 407 ILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTI 466

Query: 241 ISTLNLSS--VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLR 298
              + +    +E L L NN L GSIP +  R + +  + L  N  +G+IP  I   S L 
Sbjct: 467 PEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLA 526

Query: 299 ALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV-----GNESLY 353
            L L  N L G +P QL   + L  +DL+ N L G +P  + +     +     G +  +
Sbjct: 527 ILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAF 586

Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEV-NFMTKNRYESYKGVILEHM 412
             +E G D         +      RL+   +        + + MT   + +   +I    
Sbjct: 587 VRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIY--- 643

Query: 413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNG 472
              D+S N ++G IP   G++  +  LNL +N ++G+IP+SF  LK I  LDLSHN L G
Sbjct: 644 --FDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQG 701

Query: 473 QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPK 532
            +P  L  L  LS  DVS NNL+GPIP   Q +TF  S Y  N  LCG P+ + C + P+
Sbjct: 702 YLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL-RPCGSAPR 760

Query: 533 LLEPSSKGAEDESAVDMV--AFYWSFVASYVTLMLGLLAI 570
               S   A+ ++    V     +SF+  +V L++ L  +
Sbjct: 761 RPITSRIHAKKQTVATAVIAGIAFSFMC-FVMLVMALYRV 799

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  223 bits (568), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 195/598 (32%), Positives = 274/598 (45%), Gaps = 96/598 (16%)

Query: 9   LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF-----QLTGAQHGLL---SLD 60
           L  LDLSHN+L+G  P   L    +L VL L  NSF G            +G+    ++D
Sbjct: 118 LSRLDLSHNRLSGPLPPGFLSALDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFPIQTVD 177

Query: 61  ISKNSFTGELPQNMGIVLQ---KLVYMNISKNSFEGNIPSSIAKMQG-LRFLDVSTNNFA 116
           +S N   GE+  +  + LQ    L   N+S NSF G+IPS +      L  LD S N+F+
Sbjct: 178 LSSNLLEGEILSS-SVFLQGAFNLTSFNVSNNSFTGSIPSFMCTASPQLTKLDFSYNDFS 236

Query: 117 GELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRST 176
           G+LSQ L + C  L  L    NN  G+I     NL +L+ L+L  N  SGKI +G+ R T
Sbjct: 237 GDLSQEL-SRCSRLSVLRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGITRLT 295

Query: 177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236
           +L +L++ +N + G IP  +G  S L  L +  N L G+IPV   +   L  LN+  N L
Sbjct: 296 KLTLLELYSNHIEGEIPKDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVNQL 355

Query: 237 SGSM--ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI--- 291
            G++  I      S+  L L NN+  G  P+T +    +  +    N  +G+I  Q+   
Sbjct: 356 GGTLSAIDFSRFQSLSILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVLEL 415

Query: 292 ----------NEHSNLRALL---------------------------------------- 301
                     N+ +NL   L                                        
Sbjct: 416 ESLSFFTFSDNKMTNLTGALSILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQI 475

Query: 302 --LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEG 359
             + A  L G IP  L +L+++ +MDLS NR  G+IP        W      L+ LD   
Sbjct: 476 FGIGACRLTGEIPAWLIKLQRVEVMDLSMNRFVGTIPG-------WLGTLPDLFYLDLS- 527

Query: 360 ADVGNVDIRDYYNSTVQLRL-------DESDLRWLVKQVEV---NFMTKNRYESYKGVIL 409
               N    +      QLR        D ++  +L   V V   N  T  +Y     +  
Sbjct: 528 ---DNFLTGELPKELFQLRALMSQKAYDATERNYLELPVFVNPNNVTTNQQYNQLSSL-- 582

Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK 469
                + +  N LTG IP E+G L+ +H L L  N  SGSIP+  SNL  +E LDLS+N 
Sbjct: 583 --PPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNN 640

Query: 470 LNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 527
           L+G+IP  LT LH LS F+V+ N LSGPIP   QF TF ++++ GN  LCG  +  SC
Sbjct: 641 LSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSC 698

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  220 bits (560), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 297/599 (49%), Gaps = 41/599 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG--FQLTGAQHGLL-SLDISKN 64
           +LK+LDLS N + G+F          L V  L  NS SG  F ++ +   LL +L++S+N
Sbjct: 202 SLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNCKLLETLNLSRN 261

Query: 65  SFTGELP-QNMGIVLQKLVYMNISKNSFEGNIPSSIAKM-QGLRFLDVSTNNFAGELSQS 122
           S  G++P  +     Q L  ++++ N + G IP  ++ + + L  LD+S N+  G+L QS
Sbjct: 262 SLIGKIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQS 321

Query: 123 LVTNCFSLIWLDLSNNNFDGQIFPNYMN-LTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
             T+C SL  L+L NN   G      ++ L+++  LYL  N+ SG +   L   + L VL
Sbjct: 322 F-TSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVL 380

Query: 182 DISNNRLSGHIPSWMGNF---SYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG 238
           D+S+N  +G +PS   +    S L+ L ++ N L G +PV+      L+ +++S N L+G
Sbjct: 381 DLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTG 440

Query: 239 SMISTL-NLSSVEHLYLQNNALGGSIPNTF-FRGSALETLDLRDNNFSGRIPHQINEHSN 296
            +   +  L  +  L +  N L G IP +    G  LETL L +N  +G +P  I++ +N
Sbjct: 441 LIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLPESISKCTN 500

Query: 297 LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS--LFW---KVGNES 351
           +  + L +N L G IP  + +L KL I+ L +N L G+IP+ + N   L W      N +
Sbjct: 501 MLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLT 560

Query: 352 LYQLDEEGADVGNVDIRDYYNSTVQLRLDE--SDLRWLVKQVEVNFMTKNRYES------ 403
                E  +  G V              +E  +D R     VE   +   R E       
Sbjct: 561 GNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLEHFPMVHS 620

Query: 404 ------YKGVIL------EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIP 451
                 Y G+ +        M  LDLS N ++G+IP   G +  +  LNL +N L+G+IP
Sbjct: 621 CPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIP 680

Query: 452 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESS 511
           +SF  LK I  LDLSHN L G +P  L  L  LS  DVS NNL+GPIP   Q +TF  + 
Sbjct: 681 DSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTR 740

Query: 512 YRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAI 570
           Y  N  LCG P+   C++  +     +   +   A  M A     V S++ +++ ++A+
Sbjct: 741 YANNSGLCGVPL-PPCSSGSRPTRSHAHPKKQSIATGMSA---GIVFSFMCIVMLIMAL 795

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  216 bits (549), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 185/591 (31%), Positives = 285/591 (48%), Gaps = 40/591 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG---FQLTGAQHGLLSLDISKN 64
           +L+ LDLS+N    + P  L  N T L+V+ +  NSF G   + L G   GL  ++ S N
Sbjct: 102 SLQALDLSNNAFESSLPKSL-SNLTSLKVIDVSVNSFFGTFPYGL-GMATGLTHVNASSN 159

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
           +F+G LP+++G     L  ++     FEG++PSS   ++ L+FL +S NNF G++ + ++
Sbjct: 160 NFSGFLPEDLGNA-TTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPK-VI 217

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
               SL  + L  N F G+I   +  LT+LQ L L   + +G+I   L +  +L  + + 
Sbjct: 218 GELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLY 277

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
            NRL+G +P  +G  + L  L +S N + G IP++  +L +L++LN+  N L+G + S +
Sbjct: 278 QNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKI 337

Query: 245 -NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
             L ++E L L  N+L GS+P    + S L+ LD+  N  SG IP  +    NL  L+L 
Sbjct: 338 AELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLILF 397

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
            N   G IP ++     L  + +  N + GSIPA          G+  + Q  E   +  
Sbjct: 398 NNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPA--------GSGDLPMLQHLELAKNNL 449

Query: 364 NVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKN------RYESYKGVILEH------ 411
              I D    +  L   +     L       F + N       + ++ G I         
Sbjct: 450 TGKIPDDIALSTSLSFIDISFNHLSSLSSSIFSSPNLQTFIASHNNFAGKIPNQIQDRPS 509

Query: 412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
           ++ LDLS N  +G IP  I   + +  LNL  N L G IP++ + + M+  LDLS+N L 
Sbjct: 510 LSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLT 569

Query: 472 GQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCG---PPINKSCT 528
           G IP  L    +L   +VS+N L GPIP    F+  D     GN  LCG   PP +KS  
Sbjct: 570 GNIPADLGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCGGVLPPCSKS-- 627

Query: 529 NLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGL--LAILWINPYW 577
                L  S+KG          A +   V + V + +G+  LA  WI   W
Sbjct: 628 -----LALSAKGRNPGRIHVNHAVFGFIVGTSVIVAMGMMFLAGRWIYTRW 673

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  214 bits (546), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 186/603 (30%), Positives = 282/603 (46%), Gaps = 58/603 (9%)

Query: 9   LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF--QLTGAQHGLLSLDISKNSF 66
           L+Y DLS N+L G  P  L  + + L+ L+L+ N  +G      G    +  + I  N  
Sbjct: 144 LEYFDLSINQLVGEIPPEL-GDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLL 202

Query: 67  TGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTN 126
           TG +P + G  L KLV + +  NS  G+IPS I  +  LR L +  NN  G++  S   N
Sbjct: 203 TGPIPSSFG-NLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSF-GN 260

Query: 127 CFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN 186
             ++  L++  N   G+I P   N+T L  L L  N  +G I   L     L VL +  N
Sbjct: 261 LKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLN 320

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-N 245
           +L+G IP  +G    +  L +S+N L G +P  F  L  LE L + +N LSG +   + N
Sbjct: 321 QLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIAN 380

Query: 246 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305
            + +  L L  N   G +P+T  RG  LE L L DN+F G +P  + +  +L  +  + N
Sbjct: 381 STELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGN 440

Query: 306 YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA----------------CITNSLFWKVGN 349
              G I         L  +DLS+N  +G + A                 IT ++  ++ N
Sbjct: 441 SFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWN 500

Query: 350 ES-LYQLD--------EEGADVGNVDIRDYYNSTVQLRLDESDLRW-------LVKQVEV 393
            + L QLD        E    + N+      N   +L+L+ + L         L+  +E 
Sbjct: 501 MTQLSQLDLSSNRITGELPESISNI------NRISKLQLNGNRLSGKIPSGIRLLTNLEY 554

Query: 394 NFMTKNRYESYKGVILEHMAGL---DLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI 450
             ++ NR+ S     L ++  L   +LS N+L   IP  +  L  +  L+LSYN L G I
Sbjct: 555 LDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEI 614

Query: 451 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDES 510
              F +L+ +E LDLSHN L+GQIPP   ++ +L+  DVS+NNL GPIPD   F      
Sbjct: 615 SSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPD 674

Query: 511 SYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAI 570
           ++ GN  LCG        N  + L+P S  +  +S  D     +  V      ++G + I
Sbjct: 675 AFEGNKDLCG------SVNTTQGLKPCSITSSKKSHKDRNLIIYILVP-----IIGAIII 723

Query: 571 LWI 573
           L +
Sbjct: 724 LSV 726

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  210 bits (534), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 174/541 (32%), Positives = 266/541 (49%), Gaps = 49/541 (9%)

Query: 14  LSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG--FQLTGAQHGLLSLDISKNSFTGELP 71
           +S N     F + L ++   L+ + +  NSFSG  F  +    GL+ L+ S N+ +G L 
Sbjct: 98  VSFNISCNGFESLLPKSIPPLKSIDISQNSFSGSLFLFSNESLGLVHLNASGNNLSGNLT 157

Query: 72  QNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL-------- 123
           +++G  L  L  +++  N F+G++PSS   +Q LRFL +S NN  GEL   L        
Sbjct: 158 EDLG-NLVSLEVLDLRGNFFQGSLPSSFKNLQKLRFLGLSGNNLTGELPSVLGQLPSLET 216

Query: 124 ---------------VTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI 168
                            N  SL +LDL+     G+I      L  L+ L L  N+F+G I
Sbjct: 217 AILGYNEFKGPIPPEFGNINSLKYLDLAIGKLSGEIPSELGKLKSLETLLLYENNFTGTI 276

Query: 169 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI 228
              +   T L VLD S+N L+G IP  +     LQ+L++ +N L G+IP   + L  L++
Sbjct: 277 PREIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQV 336

Query: 229 LNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRI 287
           L +  N LSG + S L  +S ++ L + +N+  G IP+T      L  L L +N F+G+I
Sbjct: 337 LELWNNTLSGELPSDLGKNSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQI 396

Query: 288 PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347
           P  ++   +L  + ++ N L G IP    +L KL  ++L+ NRL G IP  I++S+    
Sbjct: 397 PATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSLSF 456

Query: 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407
                        D     IR    ST+   L   +L+  +  V  NF++    + ++  
Sbjct: 457 ------------IDFSRNQIRSSLPSTI---LSIHNLQAFL--VADNFISGEVPDQFQDC 499

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
               ++ LDLSSN LTG IPS I   + +  LNL  N L+G IP   + +  +  LDLS+
Sbjct: 500 --PSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLDLSN 557

Query: 468 NKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCG---PPIN 524
           N L G +P  +    +L   +VSYN L+GP+P      T +    RGN  LCG   PP +
Sbjct: 558 NSLTGVLPESIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLPPCS 617

Query: 525 K 525
           K
Sbjct: 618 K 618

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  209 bits (532), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 174/550 (31%), Positives = 269/550 (48%), Gaps = 46/550 (8%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS 65
           NL+ L L+ N+L G  P  +    +KL+ L L +N  +G   T  G   GL  + I  N 
Sbjct: 154 NLETLILNSNQLTGKIPPDI-SKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNK 212

Query: 66  -FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
             +G++P  +G     L  + +++ S  GN+PSS+ K++ L  L + T   +GE+   L 
Sbjct: 213 EISGQIPSEIGDC-SNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDL- 270

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
            NC  L+ L L  N+  G I      LT+L+ L+L  N   G I + +   + L ++D+S
Sbjct: 271 GNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLS 330

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
            N LSG IPS +G  S+L+   +S N   G+IP   ++   L  L + +N +SG + S L
Sbjct: 331 LNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSEL 390

Query: 245 -------------------------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 279
                                    + + ++ L L  N+L G+IP+  F    L  L L 
Sbjct: 391 GTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLI 450

Query: 280 DNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACI 339
            N+ SG IP +I   S+L  L L  N + G IP  +  L+K+  +D S NRL+G +P  I
Sbjct: 451 SNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEI 510

Query: 340 TNS---LFWKVGNESLY-QLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVN- 394
            +        + N SL   L    + +  + + D   +    ++  S    L + V +N 
Sbjct: 511 GSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPAS----LGRLVSLNK 566

Query: 395 -FMTKNRYESYKGVILEHMAGL---DLSSNELTGNIPSEIGDLQNIH-GLNLSYNFLSGS 449
             ++KN +       L   +GL   DL SNEL+G IPSE+GD++N+   LNLS N L+G 
Sbjct: 567 LILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGK 626

Query: 450 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDE 509
           IP   ++L  +  LDLSHN L G + P L  + +L   ++SYN+ SG +PD + F     
Sbjct: 627 IPSKIASLNKLSILDLSHNMLEGDLAP-LANIENLVSLNISYNSFSGYLPDNKLFRQLSP 685

Query: 510 SSYRGNLHLC 519
               GN  LC
Sbjct: 686 QDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score =  209 bits (532), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 176/555 (31%), Positives = 276/555 (49%), Gaps = 49/555 (8%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG------FQLTGAQHGLLSLDI 61
           ++  LDLS+  ++G     +   +  L  L + +NSFSG      ++L+    GL  L+I
Sbjct: 77  SITRLDLSNLNISGTISPEISRLSPSLVFLDISSNSFSGELPKEIYELS----GLEVLNI 132

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
           S N F GEL       + +LV ++   NSF G++P S+  +  L  LD+  N F GE+ +
Sbjct: 133 SSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNYFDGEIPR 192

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLD-NNHFSGKIKDGLLRSTELMV 180
           S   +  SL +L LS N+  G+I     N+T L  LYL   N + G I     R   L+ 
Sbjct: 193 S-YGSFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRGGIPADFGRLINLVH 251

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
           LD++N  L G IP+ +GN   L++L +  N L G++P +  ++  L+ L++S N L G +
Sbjct: 252 LDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEGEI 311

Query: 241 ISTLNLSSVEHLYLQN---NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNL 297
              L LS ++ L L N   N L G IP        L+ L L  NNF+G+IP ++  + NL
Sbjct: 312 --PLELSGLQKLQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTGKIPSKLGSNGNL 369

Query: 298 RALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS-LFW--KVGNESLYQ 354
             + L  N L G IP  LC  R+L I+ L +N L+G +P  +      W  ++G   L  
Sbjct: 370 IEIDLSTNKLTGLIPESLCFGRRLKILILFNNFLFGPLPEDLGQCEPLWRFRLGQNFLTS 429

Query: 355 LDEEG-ADVGNVDIRDYYNS--TVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI--L 409
              +G   + N+ + +  N+  T ++  +E+         ++N           G I  L
Sbjct: 430 KLPKGLIYLPNLSLLELQNNFLTGEIPEEEAGNAQFSSLTQINLSNNRLSGPIPGSIRNL 489

Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK 469
             +  L L +N L+G IP EIG L+++  +++S N  SG  P  F +   +  LDLSHN+
Sbjct: 490 RSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLTYLDLSHNQ 549

Query: 470 LNGQIPPQLTELH------------------------SLSKFDVSYNNLSGPIPDKEQFS 505
           ++GQIP Q++++                         SL+  D S+NN SG +P   QFS
Sbjct: 550 ISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGSVPTSGQFS 609

Query: 506 TFDESSYRGNLHLCG 520
            F+ +S+ GN  LCG
Sbjct: 610 YFNNTSFLGNPFLCG 624

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	580
358345471	933	Receptor kinase [Medicago truncatula] gi	0.989	0.615	0.494	1e-140
255553269	2793	receptor-kinase, putative [Ricinus commu	0.920	0.191	0.506	1e-135
238478394	1083	receptor like protein 1 [Arabidopsis tha	0.991	0.530	0.459	1e-135
238478392	913	receptor like protein 1 [Arabidopsis tha	0.991	0.629	0.459	1e-135
240254032	1034	receptor like protein 1 [Arabidopsis tha	0.991	0.556	0.459	1e-135
297842171	966	leucine-rich repeat family protein [Arab	0.991	0.595	0.462	1e-132
357468869	703	Receptor protein kinase-like protein [Me	0.929	0.766	0.467	1e-131
358345705	703	Receptor protein kinase-like protein [Me	0.929	0.766	0.467	1e-131
358345693	1011	Receptor-like protein kinase [Medicago t	0.943	0.541	0.464	1e-131
357468861	1016	Receptor-like protein kinase [Medicago t	0.943	0.538	0.464	1e-131

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 302/611 (49%), Positives = 399/611 (65%), Gaps = 37/611 (6%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG-FQLTGAQHGLLSLD 60
           FL +Q  L+ LDLSHNKL+GNFP+W+LENNTKLE LYL+NNSF+G  +L   +HGLL L 
Sbjct: 306 FLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELPTFKHGLLDLQ 365

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
           IS N   G+L +++G +   L Y+N+SKNSFEG +PSSI +MQ +R LD+S NNF+GELS
Sbjct: 366 ISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDLSNNNFSGELS 425

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
             L++N  SL  L LS+N+F G + P   NLT+L  LYL+NN FSG I+DG+  ++ L  
Sbjct: 426 SHLISNLTSLRLLRLSHNSFHGLV-PLLSNLTRLNWLYLNNNSFSGVIEDGVSNNSSLFS 484

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
           LDISNN LSG IP W+G F+ L +LS+SKN L+G IP +  +L+ L  L++SENNLS  +
Sbjct: 485 LDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLISLSYLDLSENNLSDFL 544

Query: 241 ISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA 299
                N   ++ LYLQ NAL G+IP  F + + L +LDLRDNNF G IP  IN  S LR 
Sbjct: 545 PYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGNIPQWINRLSKLRV 604

Query: 300 LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV------------ 347
           LLL  N L GPIP  +C L  + IMDLSHN +  +IP CI N  F  V            
Sbjct: 605 LLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKNISFKMVEFQTTAVGGRAV 664

Query: 348 -------------GNES---LYQLDEEGADVGNV-DIRDYYNSTVQLRLDESDLRWLVKQ 390
                        GN +   ++ +D+     GN  DI  +YNS++ L    +D   +  +
Sbjct: 665 QNDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDI--FYNSSLSLNHPIADEYMISYE 722

Query: 391 -VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS 449
            VE+ F TK+ Y SYKG  L  M GLDLSSN L+G+IP EIG+L++I  LNLS+N  SGS
Sbjct: 723 IVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGELRDIKALNLSHNRFSGS 782

Query: 450 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDE 509
           IP +F NL  IESLDLS+N L+G +P  LT L+SL+ F+VSYN  SG +P   QF+ FDE
Sbjct: 783 IPGTFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIFNVSYNKFSGRVPTTMQFANFDE 842

Query: 510 SSYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLA 569
           ++YRGN  LCG  IN +C N   +  P+S   + ++A+DM +FYWS VASYVT+++GL  
Sbjct: 843 NNYRGNSDLCGSVINITC-NHTSIFPPAST-TQHQTAIDMESFYWSCVASYVTVVIGLAV 900

Query: 570 ILWINPYWRRL 580
           ILW+N +W R+
Sbjct: 901 ILWVNSHWCRV 911

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 286/565 (50%), Positives = 369/565 (65%), Gaps = 31/565 (5%)

Query: 2    FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG-FQLTGAQHGLLSLD 60
            FL +Q +L+++DLSHN L G FP+W+L+NN++LEV+ ++NNSF+G FQL   +H L++L 
Sbjct: 1333 FLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTFQLPSYRHELINLK 1392

Query: 61   ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
            IS NS  G++P+++G++L  L Y+N+S N FEGNIPSSI++M+GL  LD+S N F+GEL 
Sbjct: 1393 ISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDLSNNYFSGELP 1452

Query: 121  QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
            +SL++N   L+ L LSNNNF G+IFP  MNL +L +L ++NN+FSGKI         L V
Sbjct: 1453 RSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDVDFFYCPRLSV 1512

Query: 181  LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
            LDIS N+++G                         IP+Q  +L  +EIL++SEN   G+M
Sbjct: 1513 LDISKNKVAGV------------------------IPIQLCNLSSVEILDLSENRFFGAM 1548

Query: 241  ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRAL 300
             S  N SS+ +L+LQ N L G IP+   R S L  +DLR+N FSG IP  I++ S L  L
Sbjct: 1549 PSCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKFSGNIPSWISQLSELHVL 1608

Query: 301  LLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA 360
            LL  N L G IP+QLC+LR L IMDLSHN L GSIP+C  N  F  +  ES        A
Sbjct: 1609 LLGGNALGGHIPNQLCQLRNLKIMDLSHNLLCGSIPSCFHNISFGSMVEESFSSSSIGVA 1668

Query: 361  DVGNVDIRDYYNSTVQLRLDESDLRWLVK-QVEVNFMTKNRYESYKGVILEHMAGLDLSS 419
               + D   YY +T++L L    L W    +V+V F+ K RY SYKG ++  MAG+DLS 
Sbjct: 1669 MASHYDSYAYYKATLELDL-PGLLSWSSSSEVQVEFIMKYRYNSYKGSVINLMAGIDLSR 1727

Query: 420  NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479
            NEL G IPSEIGD+Q I  LNLSYN LSGSIP SFSNLK +ESLDL +N L+G+IP QL 
Sbjct: 1728 NELRGEIPSEIGDIQEIRSLNLSYNHLSGSIPFSFSNLKNLESLDLRNNSLSGEIPTQLV 1787

Query: 480  ELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSK 539
            EL+ L  FDVSYNNLSG I +K QF TFDESSY+GN  LCG  I++SC N      PS  
Sbjct: 1788 ELNFLGTFDVSYNNLSGRILEKGQFGTFDESSYKGNPELCGDLIHRSC-NTEATTPPSPS 1846

Query: 540  ---GAEDESAVDMVAFYWSFVASYV 561
                 EDE  +DM  FYWSF ASYV
Sbjct: 1847 PDVDEEDEGPIDMFWFYWSFCASYV 1871

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478394|ref|NP_001154318.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189998|gb|AEE28119.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/588 (45%), Positives = 369/588 (62%), Gaps = 13/588 (2%)

Query: 2    FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
            FL HQ +L ++DLSHNKL G FPTWL++NNT+L+ + L  NS +  QL    HGL  LDI
Sbjct: 476  FLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTKLQLPILVHGLQVLDI 535

Query: 62   SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
            S N     + +++G+V   L +MN S N F+G IPSSI +M+ L+ LD+S+N   G+L  
Sbjct: 536  SSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPI 595

Query: 122  SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
              ++ C+SL  L LSNN   G+IF  + NLT L  L+LD N+F+G +++GLL+S  L +L
Sbjct: 596  MFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLL 655

Query: 182  DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
            DIS+NR SG +P W+G  S L  L MS N L+G  P        +E+++IS N+ SGS+ 
Sbjct: 656  DISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPW-VEVMDISHNSFSGSIP 714

Query: 242  STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
              +N  S+  L LQNN   G +P   F+ + LE LDLR+NNFSG+I + I++ S LR LL
Sbjct: 715  RNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILL 774

Query: 302  LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
            LR N  Q  IP ++C+L ++G++DLSHN+  G IP+C +   F    N+    L  +  D
Sbjct: 775  LRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVAD-FD 833

Query: 362  VGNVDIRDYYNSTVQLRLDESDLRWLVKQ--VEVNFMTKNRYESYKGVILEHMAGLDLSS 419
               +    +      L LD+        +    V+F+TK+RYE+Y+G IL +M GLDLSS
Sbjct: 834  FSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSS 893

Query: 420  NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479
            NEL+G IP EIGDLQNI  LNLS N L+GSIP+S S LK +ESLDLS+NKL+G IPP L 
Sbjct: 894  NELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALA 953

Query: 480  ELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSK 539
            +L+SL   ++SYNNLSG IP K    TFDE SY GN HLCG P NK+C +  ++ EP S 
Sbjct: 954  DLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCIS-QRVPEPPSV 1012

Query: 540  GAEDE--------SAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
                +        + +DMV FYW+  A Y++  L L A L+I+  W R
Sbjct: 1013 STHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSR 1060

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478392|ref|NP_001154317.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189997|gb|AEE28118.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/588 (45%), Positives = 369/588 (62%), Gaps = 13/588 (2%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
           FL HQ +L ++DLSHNKL G FPTWL++NNT+L+ + L  NS +  QL    HGL  LDI
Sbjct: 306 FLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTKLQLPILVHGLQVLDI 365

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
           S N     + +++G+V   L +MN S N F+G IPSSI +M+ L+ LD+S+N   G+L  
Sbjct: 366 SSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPI 425

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
             ++ C+SL  L LSNN   G+IF  + NLT L  L+LD N+F+G +++GLL+S  L +L
Sbjct: 426 MFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLL 485

Query: 182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
           DIS+NR SG +P W+G  S L  L MS N L+G  P        +E+++IS N+ SGS+ 
Sbjct: 486 DISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPW-VEVMDISHNSFSGSIP 544

Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
             +N  S+  L LQNN   G +P   F+ + LE LDLR+NNFSG+I + I++ S LR LL
Sbjct: 545 RNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILL 604

Query: 302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
           LR N  Q  IP ++C+L ++G++DLSHN+  G IP+C +   F    N+    L  +  D
Sbjct: 605 LRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVAD-FD 663

Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQ--VEVNFMTKNRYESYKGVILEHMAGLDLSS 419
              +    +      L LD+        +    V+F+TK+RYE+Y+G IL +M GLDLSS
Sbjct: 664 FSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSS 723

Query: 420 NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479
           NEL+G IP EIGDLQNI  LNLS N L+GSIP+S S LK +ESLDLS+NKL+G IPP L 
Sbjct: 724 NELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALA 783

Query: 480 ELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSK 539
           +L+SL   ++SYNNLSG IP K    TFDE SY GN HLCG P NK+C +  ++ EP S 
Sbjct: 784 DLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCIS-QRVPEPPSV 842

Query: 540 GAEDE--------SAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
               +        + +DMV FYW+  A Y++  L L A L+I+  W R
Sbjct: 843 STHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSR 890

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254032|ref|NP_172219.5| receptor like protein 1 [Arabidopsis thaliana] gi|332189996|gb|AEE28117.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/588 (45%), Positives = 369/588 (62%), Gaps = 13/588 (2%)

Query: 2    FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
            FL HQ +L ++DLSHNKL G FPTWL++NNT+L+ + L  NS +  QL    HGL  LDI
Sbjct: 427  FLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTKLQLPILVHGLQVLDI 486

Query: 62   SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
            S N     + +++G+V   L +MN S N F+G IPSSI +M+ L+ LD+S+N   G+L  
Sbjct: 487  SSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPI 546

Query: 122  SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
              ++ C+SL  L LSNN   G+IF  + NLT L  L+LD N+F+G +++GLL+S  L +L
Sbjct: 547  MFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLL 606

Query: 182  DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
            DIS+NR SG +P W+G  S L  L MS N L+G  P        +E+++IS N+ SGS+ 
Sbjct: 607  DISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPW-VEVMDISHNSFSGSIP 665

Query: 242  STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
              +N  S+  L LQNN   G +P   F+ + LE LDLR+NNFSG+I + I++ S LR LL
Sbjct: 666  RNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILL 725

Query: 302  LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
            LR N  Q  IP ++C+L ++G++DLSHN+  G IP+C +   F    N+    L  +  D
Sbjct: 726  LRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVAD-FD 784

Query: 362  VGNVDIRDYYNSTVQLRLDESDLRWLVKQ--VEVNFMTKNRYESYKGVILEHMAGLDLSS 419
               +    +      L LD+        +    V+F+TK+RYE+Y+G IL +M GLDLSS
Sbjct: 785  FSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSS 844

Query: 420  NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479
            NEL+G IP EIGDLQNI  LNLS N L+GSIP+S S LK +ESLDLS+NKL+G IPP L 
Sbjct: 845  NELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALA 904

Query: 480  ELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSK 539
            +L+SL   ++SYNNLSG IP K    TFDE SY GN HLCG P NK+C +  ++ EP S 
Sbjct: 905  DLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCIS-QRVPEPPSV 963

Query: 540  GAEDE--------SAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
                +        + +DMV FYW+  A Y++  L L A L+I+  W R
Sbjct: 964  STHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSR 1011

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 274/592 (46%), Positives = 375/592 (63%), Gaps = 17/592 (2%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
           FL HQ +L+++DLS+NK++G  P+WLL NNTKL+VL L NN F+ FQ+  + H LL LD 
Sbjct: 364 FLIHQKDLRHVDLSNNKISGKLPSWLLANNTKLKVLLLQNNFFTSFQIPKSAHDLLFLDA 423

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
           S N F    P+N+G +   L YMNI KN F+GN+PSS+  M+GL++LD+S N+F G+L +
Sbjct: 424 SANEFNHLFPENIGWIFPHLRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGKLPR 483

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
           S V  C+S+  L LS+N   G+IFP   NLT L  L++DNN F+GKI  GL     L +L
Sbjct: 484 SFVNGCYSMAILKLSHNKLSGEIFPESTNLTSLLGLFMDNNLFTGKIGQGLRSLINLELL 543

Query: 182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
           D+SNN L+G IPSW+G    L  L +S N L+G IP    +   L++L++S N+LSG + 
Sbjct: 544 DMSNNNLTGVIPSWIGELPSLTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLSGGIP 603

Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
              +      L LQ+N L G+I +T      +E LDLR+N FSG IP  IN   N+  LL
Sbjct: 604 PHHDSRDGVVLLLQDNNLSGTIADTLLVN--VEILDLRNNRFSGNIPEFINTQ-NISILL 660

Query: 302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLD---EE 358
           LR N L G IPHQLC L  + ++DLS+NRL GSIP+C++N+ F      + Y  D     
Sbjct: 661 LRGNKLTGRIPHQLCGLSNIQLLDLSNNRLNGSIPSCLSNTSFGFGKECTSYDYDFGISF 720

Query: 359 GADVGN-----VDIRDYYNSTVQLR----LDESDLRW-LVKQVEVNFMTKNRYESYKGVI 408
            +DV N      D+    NS +  +    LD   + +    Q ++ F TK+RY++Y G  
Sbjct: 721 PSDVFNGFSLHQDLSSNKNSGIYFKSLLMLDPFSMDYKAATQTKIEFATKHRYDAYMGGN 780

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           L+ + G+DLS NEL+G IP E G L  +  LNLS+N LSG IP+S S+++ +ES DLS N
Sbjct: 781 LKLLFGIDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSLSSMEKMESFDLSFN 840

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT 528
           +L G+IP QLTEL SLS F VS+NNLSG IP+  QF+TFD  SY GN  LCG P N+SC 
Sbjct: 841 RLQGRIPAQLTELTSLSVFKVSHNNLSGVIPEGRQFNTFDAESYLGNRLLCGQPTNRSCN 900

Query: 529 NLPKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRRL 580
           N     E   +  ++ES +DM +FYWSF A+YVT+++G+LA L  +  W+R 
Sbjct: 901 N-NSFEEADDEVEDNESTIDMESFYWSFGAAYVTILVGILASLSFDSPWKRF 951

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/590 (46%), Positives = 370/590 (62%), Gaps = 51/590 (8%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
           FL +Q++L  +DLS NKL G FP W + ++ K                         LDI
Sbjct: 131 FLSYQYSLILMDLSSNKLVGLFPRWFIHSSMKY------------------------LDI 166

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
           S NS +G LP+++GI L  + YMN S N+FEGNIPSSI KM+ L  LD+S N+F+GEL +
Sbjct: 167 SINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNHFSGELPK 226

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
            L T C +L +L LSNN   G I P + N   ++ L+L+NN+FSG ++D L  +T L+ L
Sbjct: 227 QLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGNNTGLVFL 285

Query: 182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
            ISNN  SG IPS +G FSY+ +L MS+N+LEG IP++ +++  L+IL++S+N L GS+ 
Sbjct: 286 SISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLSQNKLIGSIP 345

Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
               L+ +  LYLQ N L GSIP+    GS L+ LDLR+N FSG+IPH +++ S LR LL
Sbjct: 346 KLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKLSELRVLL 405

Query: 302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQ-LDEEGA 360
           L  N L+G IP QLCRL+K+ IMDLS N L  SIP+C  N  F       + Q +D++  
Sbjct: 406 LGGNKLEGDIPIQLCRLKKIDIMDLSRNMLNASIPSCFRNMSF------GMRQYVDDDDG 459

Query: 361 DVGNVDIRDY-----YNSTVQLR----LDESDLRWLVKQVEVNFMTKNRYESYKGVILEH 411
                 I  Y     +N+++ ++    L   DL     Q EV F TK+    YKG +LE+
Sbjct: 460 PTFEFSISGYLPTISFNASLSIQPPWSLFNEDL-----QFEVEFRTKHYEYFYKGKVLEN 514

Query: 412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
           M GLDLS N LTG IPS+IG LQ +  LNLS+N LSG IP +FSNL  IESLDLS+N L+
Sbjct: 515 MTGLDLSWNNLTGLIPSQIGHLQQVRALNLSHNHLSGPIPITFSNLTQIESLDLSYNNLS 574

Query: 472 GQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLP 531
           G+IP +LT+L+ LS F+VSYNN SG  P   QF  FDE SYRGN  LCGP + + C  + 
Sbjct: 575 GKIPNELTQLNFLSTFNVSYNNFSGTPPSTGQFGGFDEDSYRGNPGLCGPLLYQKCERVE 634

Query: 532 KLLEPSSKG---AEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWR 578
               PSS+     E E+ VDM+ FYWSF ASY+T++L  + +L +NP WR
Sbjct: 635 S--SPSSQSNDNGEKETMVDMITFYWSFTASYITILLAFITVLCVNPRWR 682

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345705|ref|XP_003636916.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502851|gb|AES84054.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/590 (46%), Positives = 370/590 (62%), Gaps = 51/590 (8%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
           FL +Q++L  +DLS NKL G FP W + ++ K                         LDI
Sbjct: 131 FLSYQYSLILMDLSSNKLVGLFPRWFIHSSMKY------------------------LDI 166

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
           S NS +G LP+++GI L  + YMN S N+FEGNIPSSI KM+ L  LD+S N+F+GEL +
Sbjct: 167 SINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNHFSGELPK 226

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
            L T C +L +L LSNN   G I P + N   ++ L+L+NN+FSG ++D L  +T L+ L
Sbjct: 227 QLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGNNTGLVFL 285

Query: 182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
            ISNN  SG IPS +G FSY+ +L MS+N+LEG IP++ +++  L+IL++S+N L GS+ 
Sbjct: 286 SISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLSQNKLIGSIP 345

Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
               L+ +  LYLQ N L GSIP+    GS L+ LDLR+N FSG+IPH +++ S LR LL
Sbjct: 346 KLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKLSELRVLL 405

Query: 302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQ-LDEEGA 360
           L  N L+G IP QLCRL+K+ IMDLS N L  SIP+C  N  F       + Q +D++  
Sbjct: 406 LGGNKLEGDIPIQLCRLKKINIMDLSRNMLNASIPSCFRNMSF------GMRQYVDDDDG 459

Query: 361 DVGNVDIRDY-----YNSTVQLR----LDESDLRWLVKQVEVNFMTKNRYESYKGVILEH 411
                 I  Y     +N+++ ++    L   DL     Q EV F TK+    YKG +LE+
Sbjct: 460 PTFEFSISGYLPTISFNASLSIQPPWSLFNEDL-----QFEVEFRTKHYEYFYKGKVLEN 514

Query: 412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
           M GLDLS N LTG IPS+IG LQ +  LNLS+N LSG IP +FSNL  IESLDLS+N L+
Sbjct: 515 MTGLDLSWNNLTGLIPSQIGHLQQVRALNLSHNHLSGPIPITFSNLTQIESLDLSYNNLS 574

Query: 472 GQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLP 531
           G+IP +LT+L+ LS F+VSYNN SG  P   QF  FDE SYRGN  LCGP + + C  + 
Sbjct: 575 GKIPNELTQLNFLSTFNVSYNNFSGTPPSTGQFGGFDEDSYRGNPGLCGPLLYQKCERVE 634

Query: 532 KLLEPSSKG---AEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWR 578
               PSS+     E E+ VDM+ FYWSF ASY+T++L  + +L +NP WR
Sbjct: 635 S--SPSSQSNDNGEKETMVDMITFYWSFTASYITILLAFITVLCVNPRWR 682

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 273/588 (46%), Positives = 373/588 (63%), Gaps = 41/588 (6%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPT-WLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLD 60
           FL +Q+NL YL LS N + G+ P+ WL+ N+                        ++ LD
Sbjct: 397 FLSYQYNLVYLVLSSNNINGSLPSNWLIHNDD-----------------------MIYLD 433

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
           IS N+ +G LP+++GI L  + Y+N S NSFEGNIPSSI KM+ L+ LD S N+F+GEL 
Sbjct: 434 ISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELP 493

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
           + L T C +L +L LSNN   G I P + N   +  L+L+NN+FSG ++D L  +T L  
Sbjct: 494 KQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLET 552

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
           L ISNN  SG IPS +G FS +  L MSKN LEG IP++ + +  L+IL++S+N L+GS+
Sbjct: 553 LSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSI 612

Query: 241 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRAL 300
                L+ +  LYLQ N L GSIP   + G  L+ LDLR+N FSG+IP+ +++ S LR L
Sbjct: 613 PPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELRVL 672

Query: 301 LLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA 360
           LL  N  +G IP QLCRL+K+ IMDLS N L  SIP+C  N LF       + Q  +   
Sbjct: 673 LLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLF------GMRQYVDAVF 726

Query: 361 DVGNV-------DIRDYYNS--TVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEH 411
           D+ ++       D   +++S  ++ L L++  L   +  +EV F TK+    YKG +LE+
Sbjct: 727 DLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLEN 786

Query: 412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
           M GLDLS N+LTG IPS+IGDLQ I  LNLS+N LSG IP +FSNL  IESLDLS+N L+
Sbjct: 787 MTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLS 846

Query: 472 GQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNL- 530
           G+IP +LT+L+ LS F+VSYNNLSG  P   QF+ FDE +YRGN  LCGP +++ C  + 
Sbjct: 847 GKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVE 906

Query: 531 PKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWR 578
           P     S+   E+E+ VDM+ FYWSF ASY+T++L  + +L INP WR
Sbjct: 907 PPPSSQSNDNEEEETGVDMITFYWSFTASYITILLAFITVLCINPRWR 954

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 273/588 (46%), Positives = 373/588 (63%), Gaps = 41/588 (6%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPT-WLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLD 60
           FL +Q+NL YL LS N + G+ P+ WL+ N+                        ++ LD
Sbjct: 397 FLSYQYNLVYLVLSSNNINGSLPSNWLIHNDD-----------------------MIYLD 433

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
           IS N+ +G LP+++GI L  + Y+N S NSFEGNIPSSI KM+ L+ LD S N+F+GEL 
Sbjct: 434 ISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGELP 493

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
           + L T C +L +L LSNN   G I P + N   +  L+L+NN+FSG ++D L  +T L  
Sbjct: 494 KQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRLET 552

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
           L ISNN  SG IPS +G FS +  L MSKN LEG IP++ + +  L+IL++S+N L+GS+
Sbjct: 553 LSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKLNGSI 612

Query: 241 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRAL 300
                L+ +  LYLQ N L GSIP   + G  L+ LDLR+N FSG+IP+ +++ S LR L
Sbjct: 613 PPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELRVL 672

Query: 301 LLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA 360
           LL  N  +G IP QLCRL+K+ IMDLS N L  SIP+C  N LF       + Q  +   
Sbjct: 673 LLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLF------GMRQYVDAVF 726

Query: 361 DVGNV-------DIRDYYNS--TVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEH 411
           D+ ++       D   +++S  ++ L L++  L   +  +EV F TK+    YKG +LE+
Sbjct: 727 DLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLEN 786

Query: 412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
           M GLDLS N+LTG IPS+IGDLQ I  LNLS+N LSG IP +FSNL  IESLDLS+N L+
Sbjct: 787 MTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLS 846

Query: 472 GQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNL- 530
           G+IP +LT+L+ LS F+VSYNNLSG  P   QF+ FDE +YRGN  LCGP +++ C  + 
Sbjct: 847 GKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVE 906

Query: 531 PKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWR 578
           P     S+   E+E+ VDM+ FYWSF ASY+T++L  + +L INP WR
Sbjct: 907 PPPSSQSNDNEEEETGVDMITFYWSFTASYITILLAFITVLCINPRWR 954

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	580
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.991	0.530	0.454	1.1e-126
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.977	0.567	0.457	4.3e-125
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.986	0.592	0.446	3e-124
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.977	0.636	0.463	4.1e-120
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.982	0.584	0.445	1.8e-117
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.986	0.611	0.431	2.1e-116
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.956	0.611	0.388	5.4e-86
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.943	0.674	0.321	3.4e-61
UNIPROTKB|Q942F3	1121	P0480C01.18-1 "cDNA clone:J033	0.946	0.489	0.321	4e-58
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.877	0.407	0.324	4.5e-58

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 267/588 (45%), Positives = 366/588 (62%)

Query:     2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
             FL HQ +L ++DLSHNKL G FPTWL++NNT+L+ + L  NS +  QL    HGL  LDI
Sbjct:   476 FLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTKLQLPILVHGLQVLDI 535

Query:    62 SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
             S N     + +++G+V   L +MN S N F+G IPSSI +M+ L+ LD+S+N   G+L  
Sbjct:   536 SSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPI 595

Query:   122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
               ++ C+SL  L LSNN   G+IF  + NLT L  L+LD N+F+G +++GLL+S  L +L
Sbjct:   596 MFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLL 655

Query:   182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
             DIS+NR SG +P W+G  S L  L MS N L+G  P        +E+++IS N+ SGS+ 
Sbjct:   656 DISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIP 714

Query:   242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXX 301
               +N  S+  L LQNN   G +P   F+ + LE LDLR+NNFSG+I + I++ S      
Sbjct:   715 RNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILL 774

Query:   302 XXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
                   Q  IP ++C+L ++G++DLSHN+  G IP+C +   F    N+    L  +  D
Sbjct:   775 LRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVAD-FD 833

Query:   362 VGNVDIRDYYNSTVQLRLDESDLR-WLVKQVEV-NFMTKNRYESYKGVILEHMAGLDLSS 419
                +    +      L LD+     +  K   V +F+TK+RYE+Y+G IL +M GLDLSS
Sbjct:   834 FSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLDLSS 893

Query:   420 NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479
             NEL+G IP EIGDLQNI  LNLS N L+GSIP+S S LK +ESLDLS+NKL+G IPP L 
Sbjct:   894 NELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALA 953

Query:   480 ELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSS- 538
             +L+SL   ++SYNNLSG IP K    TFDE SY GN HLCG P NK+C +  ++ EP S 
Sbjct:   954 DLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCIS-QRVPEPPSV 1012

Query:   539 ----KGAEDE---SAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
                 K  E+E   + +DMV FYW+  A Y++  L L A L+I+  W R
Sbjct:  1013 STHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSR 1060

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 267/584 (45%), Positives = 368/584 (63%)

Query:     2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
             FL HQ +L ++DLS N++ GNFP+WLLENNTKLEVL L NNSF+ FQL  + H LL L++
Sbjct:   375 FLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTSFQLPKSAHNLLFLNV 434

Query:    62 SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
             S N F     QN G +L  LV +N++ N F+GN+PSS+  M+ + FLD+S N F G+L +
Sbjct:   435 SVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPR 494

Query:   122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
               +  C++L  L LS+N   G++FP   N T+L ++ +DNN F+G I  G      L VL
Sbjct:   495 RFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVL 554

Query:   182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
             DISNN+L+G IPSW+G    L  L +S N+LEG IP    ++  L++L++S N LSG + 
Sbjct:   555 DISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIP 614

Query:   242 STLNLSSVEH---LYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXX 298
                ++SS+ H   L LQNN L G IP+T      +  LDLR+N  SG +P  IN  +   
Sbjct:   615 P--HVSSIYHGAVLLLQNNNLSGVIPDTLLLNVIV--LDLRNNRLSGNLPEFINTQNISI 670

Query:   299 XXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFW-KVGNESLYQLDE 357
                    +  G IPHQ C L  + ++DLS+N+  GSIP+C++N+ F  + G++S Y+ D 
Sbjct:   671 LLLRGNNFT-GQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDS-YRYDV 728

Query:   358 EGADVGNVDIRDYYNSTVQLRLDESDL-RWLVKQVEVNFMTKNRYESYKGVILEHMAGLD 416
                  G      Y+ S   L +DE ++      Q ++ F TK+RY++Y G  L+ + G+D
Sbjct:   729 PSR-FGTAKDPVYFESL--LMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMD 785

Query:   417 LSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 476
             LS NEL+G IP E+G L  +  LNLS+N LSG I ESFS LK +ESLDLS N+L G IP 
Sbjct:   786 LSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPL 845

Query:   477 QLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEP 536
             QLT++ SL+ F+VSYNNLSG +P   QF+TF+  SY GN  LCG  I+ SC +      P
Sbjct:   846 QLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISCAS--NNFHP 903

Query:   537 SSKGAE-DESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
             +  G E DES VDM +FYWSFVA+YVT++LG+LA L  +  W R
Sbjct:   904 TDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSR 947

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
 Identities = 265/593 (44%), Positives = 369/593 (62%)

Query:     2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
             FL HQ +L+++DLS N ++G  P+WLL NNTKL+VL L NN F+ FQ+  + H LL LD+
Sbjct:   361 FLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTSFQIPKSAHNLLFLDV 420

Query:    62 SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
             S N F    P+N+G +   L Y+N SKN+F+ N+PSS+  M G++++D+S N+F G L +
Sbjct:   421 SANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGNLPR 480

Query:   122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
             S V  C+S+  L LS+N   G+IFP   N T +  L++DNN F+GKI  GL     L +L
Sbjct:   481 SFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELL 540

Query:   182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
             D+SNN L+G IPSW+G    L  L +S N L+G+IP+   +   L++L++S N+LSG + 
Sbjct:   541 DMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIP 600

Query:   242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXX 301
                +  +   L LQ+N L G+IP+T      +E LDLR+N FSG+IP  IN  +      
Sbjct:   601 PQHDSRNGVVLLLQDNKLSGTIPDTLLAN--VEILDLRNNRFSGKIPEFINIQNISILLL 658

Query:   302 XXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE-SLYQLD---E 357
                 +  G IPHQLC L  + ++DLS+NRL G+IP+C++N+ F   G E + Y  D    
Sbjct:   659 RGNNFT-GQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFG-FGKECTSYDYDFGIS 716

Query:   358 EGADVGN-----VDIRDYYNSTVQ----LRLDESDLRW-LVKQVEVNFMTKNRYESYKGV 407
               +DV N      D     N  +     L LD   + +    Q ++ F TK+RY++Y G 
Sbjct:   717 FPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYMGG 776

Query:   408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
              L+ + G+DLS NEL+G IP E G L  +  LNLS+N LSG IP+S S+++ +ES DLS 
Sbjct:   777 NLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSF 836

Query:   468 NKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 527
             N+L G+IP QLTEL SLS F VS+NNLSG IP   QF+TFD  SY GN  LCG P N+SC
Sbjct:   837 NRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSC 896

Query:   528 TNLPKLLEPSSKGAE-DESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
              N     E +  G E DES +DMV+FY SF A+YVT+++G+LA L  +  W R
Sbjct:   897 NN--NSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSR 947

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 272/587 (46%), Positives = 359/587 (61%)

Query:     2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
             FL +Q  L+ +DLS+N L+G FPTWLLENNT+L+ L L NNSF    L      L  LD+
Sbjct:   296 FLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFKTLTLPRTMRRLQILDL 355

Query:    62 SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
             S N+F  +LP+++G++L  L ++N+S N F GN+PSS+A+M+ + F+D+S NNF+G+L +
Sbjct:   356 SVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPR 415

Query:   122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
             +L T C+SL WL LS+N F G I     + T L  L +DNN F+GKI   LL    L V+
Sbjct:   416 NLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVI 475

Query:   182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
             D+SNN L+G IP W+GNF +L++L +S N L+G IP    ++  L +L++S N LSGS+ 
Sbjct:   476 DLSNNLLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSL- 533

Query:   242 STLNLSSVEHLY---LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXX 298
               L  SS ++ Y   L NN L GSIP+T + G  L  LDLR+N  SG IP          
Sbjct:   534 -PLRSSS-DYGYILDLHNNNLTGSIPDTLWYG--LRLLDLRNNKLSGNIP-LFRSTPSIS 588

Query:   299 XXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE 358
                     L G IP +LC L  + ++D +HNRL  SIP+C+TN  F   G  S    D  
Sbjct:   589 VVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGS-GGHSNADSDWY 647

Query:   359 GADV-GN-VDIRD--YYNSTVQLRLDESDLRWLVK-QVEVNFMTKNRYESYKGVILEHMA 413
              A +  N ++I    YY S +    D   L + V   V+V F  K RY+ Y    L  M 
Sbjct:   648 PASLLSNFMEIYTEVYYESLIVS--DRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMF 705

Query:   414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
             GLDLSSNEL+GNIP E+GDL+ +  LNLS N LSGSIP SFSNL+ IESLDLS NKL+G 
Sbjct:   706 GLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGT 765

Query:   474 IPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKL 533
             IP QLT L SL  F+VSYNNLSG IP  +QF+TF E SY GN  LCG P  +SC     +
Sbjct:   766 IPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGGTT-I 824

Query:   534 LEPSSKGAEDESAV-DMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
                     +DES + D+V  +WS   +YVT+M+G L  L  +  WRR
Sbjct:   825 SSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRR 871

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 263/590 (44%), Positives = 364/590 (61%)

Query:     2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
             FL +Q NL+ +DLS N+L+G+ PTWLLENN +L+VL L NNSF+ FQ+    H L  LD 
Sbjct:   377 FLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFTIFQIPTIVHKLQVLDF 436

Query:    62 SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
             S N  TG LP N+G VL +L++MN S N F+GN+PSS+ +M  + FLD+S NNF+GEL +
Sbjct:   437 SANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPR 496

Query:   122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
             SL+T CFSLI L LS+N+F G I P    LT L +L + NN F+G+I  GL     L + 
Sbjct:   497 SLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIF 556

Query:   182 DISNNRLSGHIPSWMG-NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
             D SNNRL+G I S +  + S+L +L +S NLLEG +P     +  L  L++S N LSG +
Sbjct:   557 DASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDL 616

Query:   241 ISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXX 298
              S++  ++  ++ ++L NN+  G +P T    + +  LDLR+N  SG IP  +N      
Sbjct:   617 PSSVVNSMYGIK-IFLHNNSFTGPLPVTLLENAYI--LDLRNNKLSGSIPQFVNTGKMIT 673

Query:   299 XXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE-SLYQLDE 357
                     L G IP +LC L  + ++DLS N+L G IP C+ N L  ++G    L    +
Sbjct:   674 LLLRGNN-LTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL-NHLSTELGEGIGLSGFSQ 731

Query:   358 EGADVGNVDIRDYYNSTVQLRLDESDLRW--LVKQVEVNFMTKNRYESYKGVILEHMAGL 415
             E    G+    ++Y ST    +DE  L +      VE+ F  K RY+S+ G  L++M GL
Sbjct:   732 E-ISFGDSLQMEFYRST--FLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGL 788

Query:   416 DLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475
             DLSSNEL+G IP+E+GDL  +  LNLS N LS SIP +FS LK IESLDLS+N L G IP
Sbjct:   789 DLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIP 848

Query:   476 PQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLE 535
              QLT L SL+ F+VS+NNLSG IP   QF+TF+++SY GN  LCG P ++SC       E
Sbjct:   849 HQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKE 908

Query:   536 PSSKGAE------DESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
               + G E      DE+A+DMV  YW+  ++Y   ++G+L ++  +  WRR
Sbjct:   909 ADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRR 958

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 253/586 (43%), Positives = 355/586 (60%)

Query:     2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
             FL +Q  L+ +DLS N L+GN PTWLL NN +LEVL L NNSF+ F +    H L   D 
Sbjct:   338 FLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFTIFPIPTMVHNLQIFDF 397

Query:    62 SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
             S N+  G+ P  M   L  LV +N S N F+G  P+SI +M+ + FLD+S NNF+G+L +
Sbjct:   398 SANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPR 456

Query:   122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
             S VT C S+++L LS+N F G+  P   N   L +L +DNN F+G I  GL  ST L +L
Sbjct:   457 SFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRIL 516

Query:   182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
             D+SNN LSG IP W+  F YL  + +S N LEG IP     +  L  L++S N  SG++ 
Sbjct:   517 DMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALP 576

Query:   242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXX 301
             S ++     +++L NN   G IP+T  +  +++ LDLR+N  SG IP Q ++        
Sbjct:   577 SHVDSELGIYMFLHNNNFTGPIPDTLLK--SVQILDLRNNKLSGSIP-QFDDTQSINILL 633

Query:   302 XXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
                  L G IP +LC L  + ++DLS N+L G IP+C++N  F ++  +++  L+   + 
Sbjct:   634 LKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAM-ALNIPPSF 692

Query:   362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV------ILEHMAGL 415
             +      + Y ST  +   E D R   ++ E+ F  K RY+SY G       IL  M G+
Sbjct:   693 LQTSLEMELYKSTFLVDKIEVD-RSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGM 751

Query:   416 DLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475
             DLS+NEL+G IP+E+GDL  +  LNLS+N L GSIP SFS L  +ESLDLSHN L G IP
Sbjct:   752 DLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIP 811

Query:   476 PQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC-TNL-PKL 533
               L+ L SL+ FDVS NNLSG IP   QF+TF+E SY GN  LCGPP ++SC TN  P+ 
Sbjct:   812 QLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEE 871

Query:   534 LEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
              +   +  +D++A+DM+ FY+S  + YVT ++G+L ++  +  WRR
Sbjct:   872 ADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRR 917

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 229/590 (38%), Positives = 319/590 (54%)

Query:     7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHG---LLSLDISK 63
             F L  L L    L    P +L+     L V+ L  N  SG   T        L  L +  
Sbjct:   319 FQLSVLVLRLCSLE-KIPNFLMYQKN-LHVVDLSGNRISGIIPTWLLENNPELEVLQLKN 376

Query:    64 NSFT-GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAK-MQGLRFLDVSTNNFAGELSQ 121
             NSFT  ++P ++      L  ++ S+N+  G  P +  + +  L  ++ S N F G    
Sbjct:   377 NSFTIFQMPTSV----HNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPS 432

Query:   122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLT-QLQLLYLDNNHFSGKIKDGLLRSTELMV 180
             S+    +++ +LDLS NN  G++  ++++    L +L L +N FSG         T L+V
Sbjct:   433 SM-GEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIV 491

Query:   181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
             L I+NN  +G I   +     L IL MS N LEG +P        L  L++S N LSG++
Sbjct:   492 LRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGAL 551

Query:   241 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXX 300
              S ++L +V  L+L NN   G IP+TF  GS ++ LDLR+N  SG IP  ++        
Sbjct:   552 PSHVSLDNV--LFLHNNNFTGPIPDTFL-GS-IQILDLRNNKLSGNIPQFVDTQDISFLL 607

Query:   301 XXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA 360
                   L G IP  LC   K+ ++DLS N+L G IP+C  N  F     E +       A
Sbjct:   608 LRGNS-LTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYYVAVA 666

Query:   361 DVGNVDIRDYYNSTV---QLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI------LEH 411
              + +  +  +Y ST      RLD S+      +++V F TK RY+SY G        L  
Sbjct:   667 -LESFYL-GFYKSTFVVENFRLDYSNYF----EIDVKFATKQRYDSYIGAFQFSEGTLNS 720

Query:   412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
             M GLDLSSNEL+G IP+E+GDL  +  LNLS+NFLS  IP+SFS L+ IESLDLS+N L 
Sbjct:   721 MYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQ 780

Query:   472 GQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLP 531
             G IP QLT L SL+ F+VSYNNLSG IP  +QF+TFDE+SY GN  LCGPP + SC    
Sbjct:   781 GSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLCGPPTDTSCETKK 840

Query:   532 KLLEPSSKGAED--ESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRR 579
                E ++ G ED  E A+DM+ FYWS   +YVT ++G+L ++ ++  WRR
Sbjct:   841 NSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRR 890

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 188/585 (32%), Positives = 284/585 (48%)

Query:     8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQ-HGLLSLDISKNSF 66
             NL  L LS NKL+G  P+  + N   LE L L NN+    ++  A   GL  L + +   
Sbjct:   251 NLSTLSLSMNKLSGGIPS-SIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEG 309

Query:    67 TGELP-QNMGIVLQ--KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL 123
               +L   N G V    KL ++++     EGNIP  +     L +LD+S N   G   + L
Sbjct:   310 NNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWL 369

Query:   124 VTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI 183
                   +  + LS+N   G + PN      L  L L  N+FSG+I D +  S ++MVL +
Sbjct:   370 AD--LKIRNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGES-QVMVLML 426

Query:   184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST 243
             S N  SG +P  +    +L++L +SKN L G  P +F     LE L+IS N  SG + + 
Sbjct:   427 SENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPESYLEWLDISSNEFSGDVPAY 485

Query:   244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE-HSXXXXXXX 302
                S+   L  QNN   G  P  F   S L  LDL DN  SG +   I++  S       
Sbjct:   486 FGGSTSMLLMSQNN-FSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSL 544

Query:   303 XXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADV 362
                 L+G IP  +  L  L ++DLS N L G +P+ + N          + +  E  A  
Sbjct:   545 RNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLT-------CMIKSPEPSA-- 595

Query:   363 GNVDIRDYYNSTVQL----RLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS 418
               + IR Y++S   +    RL E +   +   V VN+    +    +   L  +  LDLS
Sbjct:   596 --MTIRPYFSSYTDIPNIERLIEIESEDIFSLV-VNWKNSKQVLFDRNFYLYTL--LDLS 650

Query:   419 SNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 478
              N+L G IP+ +G+L+++  LNLS N  SG IP+SF +L+ +ESLDLSHN L G+IP  L
Sbjct:   651 KNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTL 710

Query:   479 TELHSLSKFDVSYNNLSGPIPDKEQFSTFDESS-YRGNLHLCGPPINKSCTNLP-KLLEP 536
             ++L  L+  D+  N L G IP+  Q    +  + Y  N  +CG  I   C   P +  +P
Sbjct:   711 SKLSELNTLDLRNNKLKGRIPESPQLDRLNNPNIYANNSGICGMQIQVPC--FPTQTKQP 768

Query:   537 SSKGAEDESAVDMVAFYWSFVASYVTLMLG-LLAILWI--NPYWR 578
             + +  E++   +   F W+  A+ +    G L+A++++  N  W+
Sbjct:   769 AEEKEEEDKEEEETIFSWN--AAAIGCSCGFLIAVVFMSYNELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

UNIPROTKB|Q942F3 P0480C01.18-1 "cDNA clone:J033069J12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 606 (218.4 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 185/576 (32%), Positives = 284/576 (49%)

Query:     9 LKYLDLSHNKLAGNFPT-WLLENNT-KLEVLYLINNSFSGF-QLTGAQHGLLSLDISKNS 65
             L  LDLS+NK+  +    W+++     +  L L  N  SG  + T    GL  LD+S N 
Sbjct:   173 LDSLDLSNNKITDDSDLRWMVDAGVGAVRWLDLALNRISGVPEFTNCS-GLQYLDLSGNL 231

Query:    66 FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
               GE+P       + L  +N+S N   G  P  IA +  L  L++S NNF+GEL      
Sbjct:   232 IVGEVPGGALSDCRGLKVLNLSFNHLAGVFPPDIAGLTSLNALNLSNNNFSGELPGEAFA 291

Query:   126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR--STELMVLDI 183
                 L  L LS N+F+G I     +L +LQ L L +N FSG I   L +  +++L +L +
Sbjct:   292 KLQQLTALSLSFNHFNGSIPDTVASLPELQQLDLSSNTFSGTIPSSLCQDPNSKLHLLYL 351

Query:   184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST 243
              NN L+G IP  + N + L  L +S N + G+IP    DL +L+ L + +N L G + ++
Sbjct:   352 QNNYLTGGIPDAVSNCTSLVSLDLSLNYINGSIPASLGDLGNLQDLILWQNELEGEIPAS 411

Query:   244 LN-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXXX 302
             L+ +  +EHL L  N L GSIP    + + L  + L  N  SG IP  + + S       
Sbjct:   412 LSRIQGLEHLILDYNGLTGSIPPELAKCTKLNWISLASNRLSGPIPSWLGKLSYLAILKL 471

Query:   303 XXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN-----SLFWKVGNESLY-QLD 356
                   GPIP +L   + L  +DL+ N+L GSIP  +       ++   VG   +Y + D
Sbjct:   472 SNNSFSGPIPPELGDCQSLVWLDLNSNQLNGSIPKELAKQSGKMNVGLIVGRPYVYLRND 531

Query:   357 EEGADV-GNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEH--MA 413
             E  ++  G   + ++      +R D  DL  +  +   NF T+    S +    ++  M 
Sbjct:   532 ELSSECRGKGSLLEF----TSIRPD--DLSRMPSKKLCNF-TRMYVGSTEYTFNKNGSMI 584

Query:   414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
              LDLS N+L   IP E+GD+  +  +NL +N LSG+IP   +  K +  LDLS+N+L G 
Sbjct:   585 FLDLSYNQLDSAIPGELGDMFYLMIMNLGHNLLSGTIPSRLAEAKKLAVLDLSYNQLEGP 644

Query:   474 IPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCG---PPINKSCTNL 530
             IP   + L SLS+ ++S N L+G IP+    +TF +S Y  N  LCG   PP + S    
Sbjct:   645 IPNSFSAL-SLSEINLSNNQLNGTIPELGSLATFPKSQYENNTGLCGFPLPPCDHSSPRS 703

Query:   531 PKLLEPSSKGAEDESAVDMVAFYWSFVASYVTLMLG 566
                 +   + A   S++ M   +  F    + + +G
Sbjct:   704 SNDHQSHRRQASMASSIAMGLLFSLFCIIVIIIAIG 739

GO:0001578 "microtubule bundle formation" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 4.5e-58, P = 4.5e-58
 Identities = 175/539 (32%), Positives = 274/539 (50%)

Query:     8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLD---ISKN 64
             NL+ L LS  +L+G  P  L +  + L+ L L NNS +G  +  A   L+ L    +  N
Sbjct:   337 NLEQLVLSGTQLSGEIPVELSKCQS-LKQLDLSNNSLAG-SIPEALFELVELTDLYLHNN 394

Query:    65 SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
             +  G L  ++   L  L ++ +  N+ EG +P  I+ ++ L  L +  N F+GE+ Q  +
Sbjct:   395 TLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQE-I 452

Query:   125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
              NC SL  +D+  N+F+G+I P+   L +L LL+L  N   G +   L    +L +LD++
Sbjct:   453 GNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLA 512

Query:   185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
             +N+LSG IPS  G    L+ L +  N L+GN+P     L +L  +N+S N L+G++    
Sbjct:   513 DNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLC 572

Query:   245 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXXXXX 304
               SS     + NN     IP        L+ L L  N  +G+IP  + +           
Sbjct:   573 GSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSS 632

Query:   305 XYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGN 364
               L G IP QL   +KL  +DL++N L G IP  +      ++G   L         V +
Sbjct:   633 NALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGK--LSQLGELKL----SSNQFVES 686

Query:   365 VDIRDYYNST--VQLRLDESDLRWLVKQ-------VEVNFMTKNRYE-SYKGVI--LEHM 412
             +   + +N T  + L LD + L   + Q       + V  + KN++  S    +  L  +
Sbjct:   687 LPT-ELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKL 745

Query:   413 AGLDLSSNELTGNIPSEIGDLQNIHG-LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
               L LS N LTG IP EIG LQ++   L+LSYN  +G IP +   L  +E+LDLSHN+L 
Sbjct:   746 YELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLT 805

Query:   472 GQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNL 530
             G++P  + ++ SL   +VS+NNL G +  K+QFS +   S+ GN  LCG P+++ C  +
Sbjct:   806 GEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR-CNRV 861

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	580
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-67
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-25
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  235 bits (600), Expect = 4e-67
 Identities = 167/544 (30%), Positives = 258/544 (47%), Gaps = 54/544 (9%)

Query: 7   FNLKYL---DLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISK 63
           F L Y+   +LS+N+L+G  P  +   ++ L  L L NN+F+G    G+   L +LD+S 
Sbjct: 90  FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSN 149

Query: 64  NSFTGELPQNMGIV-----------------------LQKLVYMNISKNSFEGNIPSSIA 100
           N  +GE+P ++G                         L  L ++ ++ N   G IP  + 
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 101 KMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLD 160
           +M+ L+++ +  NN +GE+   +     SL  LDL  NN  G I  +  NL  LQ L+L 
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 161 NNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQF 220
            N  SG I   +    +L+ LD+S+N LSG IP  +     L+IL +  N   G IPV  
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Query: 221 NDLLDLEILNISENNLSGSMISTL----NLSSVEHLYLQNNALGGSIPNTFFRGSALETL 276
             L  L++L +  N  SG +   L    NL+ ++   L  N L G IP        L  L
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD---LSTNNLTGEIPEGLCSSGNLFKL 385

Query: 277 DLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP 336
            L  N+  G IP  +    +LR + L+ N   G +P +  +L  +  +D+S+N L G I 
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI- 444

Query: 337 ACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFM 396
               NS  W + +  +  L       G   + D + S     LD S  +     V     
Sbjct: 445 ----NSRKWDMPSLQMLSLARNKFFGG---LPDSFGSKRLENLDLSRNQ-FSGAVPRKLG 496

Query: 397 TKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSN 456
           +           L  +  L LS N+L+G IP E+   + +  L+LS+N LSG IP SFS 
Sbjct: 497 S-----------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545

Query: 457 LKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNL 516
           + ++  LDLS N+L+G+IP  L  + SL + ++S+N+L G +P    F   + S+  GN+
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605

Query: 517 HLCG 520
            LCG
Sbjct: 606 DLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  178 bits (452), Expect = 2e-47
 Identities = 130/429 (30%), Positives = 209/429 (48%), Gaps = 36/429 (8%)

Query: 80  KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN 139
           ++V +++S  +  G I S+I ++  ++ +++S N  +G +   + T   SL +L+LSNNN
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 140 FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNF 199
           F G I P   ++  L+ L L NN  SG+I + +   + L VLD+  N L G IP+ + N 
Sbjct: 130 FTGSI-PR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 200 SYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNA 258
           + L+ L+++ N L G IP +   +  L+ + +  NNLSG +   +  L+S+ HL L  N 
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 259 LGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRL 318
           L G IP++      L+ L L  N  SG IP  I     L +L L  N L G IP  + +L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 319 RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE-GADVGNVDIRDYYNSTVQL 377
           + L I+ L  N   G IP  +T+    +V      +   E   ++G  +     N TV  
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-----NLTV-- 360

Query: 378 RLDESDLRWLVKQVEVNFMTKNRYESYKGVILE------HMAGLDLSSNELTGNIPSEIG 431
            LD S                    +  G I E      ++  L L SN L G IP  +G
Sbjct: 361 -LDLST------------------NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 432 DLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY 491
             +++  + L  N  SG +P  F+ L ++  LD+S+N L G+I  +  ++ SL    ++ 
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461

Query: 492 NNLSGPIPD 500
           N   G +PD
Sbjct: 462 NKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  155 bits (392), Expect = 9e-40
 Identities = 123/383 (32%), Positives = 182/383 (47%), Gaps = 35/383 (9%)

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR-STELMVLDI 183
            N   ++ +DLS  N  G+I      L  +Q + L NN  SG I D +   S+ L  L++
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM-IS 242
           SNN  +G IP   G+   L+ L +S N+L G IP        L++L++  N L G +  S
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 243 TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLL 302
             NL+S+E L L +N L G IP    +  +L+ + L  NN SG IP++I   ++L  L L
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 303 RANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADV 362
             N L GPIP  L  L+ L  + L  N+L G IP     S+F     + L  LD      
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP----PSIF---SLQKLISLDL----- 291

Query: 363 GNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI------LEHMAGLD 416
                     S   L  +  +L   ++ +E+  +  N   ++ G I      L  +  L 
Sbjct: 292 ----------SDNSLSGEIPELVIQLQNLEILHLFSN---NFTGKIPVALTSLPRLQVLQ 338

Query: 417 LSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 476
           L SN+ +G IP  +G   N+  L+LS N L+G IPE   +   +  L L  N L G+IP 
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 477 QLTELHSLSKFDVSYNNLSGPIP 499
            L    SL +  +  N+ SG +P
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (317), Expect = 3e-30
 Identities = 93/257 (36%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 1   KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF--QLTGAQHGLLS 58
           K L    NL  LDLS N L G  P  L  ++  L  L L +NS  G   +  GA   L  
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408

Query: 59  LDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGE 118
           + +  NSF+GELP      L  + +++IS N+ +G I S    M  L+ L ++ N F G 
Sbjct: 409 VRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 119 LSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTEL 178
           L  S  +    L  LDLS N F G +     +L++L  L L  N  SG+I D L    +L
Sbjct: 468 LPDSFGSK--RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Query: 179 MVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG 238
           + LD+S+N+LSG IP+       L  L +S+N L G IP    ++  L  +NIS N+L G
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Query: 239 SMIST-----LNLSSVE 250
           S+ ST     +N S+V 
Sbjct: 586 SLPSTGAFLAINASAVA 602

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  110 bits (276), Expect = 3e-25
 Identities = 87/261 (33%), Positives = 126/261 (48%), Gaps = 22/261 (8%)

Query: 241 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI-NEHSNLRA 299
           I+  N S V  + L    + G I +  FR   ++T++L +N  SG IP  I    S+LR 
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 300 LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEG 359
           L L  N   G IP     +  L  +DLS+N L G IP          +G+ S  ++ + G
Sbjct: 123 LNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPN--------DIGSFSSLKVLDLG 172

Query: 360 ADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSS 419
            +V    I +   +   L         LV Q+        + +S K + L +        
Sbjct: 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL---GQMKSLKWIYLGY-------- 221

Query: 420 NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479
           N L+G IP EIG L +++ L+L YN L+G IP S  NLK ++ L L  NKL+G IPP + 
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 480 ELHSLSKFDVSYNNLSGPIPD 500
            L  L   D+S N+LSG IP+
Sbjct: 282 SLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.1 bits (208), Expect = 6e-17
 Identities = 36/86 (41%), Positives = 55/86 (63%)

Query: 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
           GL L +  L G IP++I  L+++  +NLS N + G+IP S  ++  +E LDLS+N  NG 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 474 IPPQLTELHSLSKFDVSYNNLSGPIP 499
           IP  L +L SL   +++ N+LSG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 6e-12
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 12/112 (10%)

Query: 373 STVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI------LEHMAGLDLSSNELTGNI 426
           S    + D +  +W +  + ++       +  +G I      L H+  ++LS N + GNI
Sbjct: 405 SGADCQFDSTKGKWFIDGLGLD------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNI 458

Query: 427 PSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 478
           P  +G + ++  L+LSYN  +GSIPES   L  +  L+L+ N L+G++P  L
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 7e-10
 Identities = 30/88 (34%), Positives = 50/88 (56%)

Query: 157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNI 216
           L LDN    G I + + +   L  +++S N + G+IP  +G+ + L++L +S N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 217 PVQFNDLLDLEILNISENNLSGSMISTL 244
           P     L  L ILN++ N+LSG + + L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 31/85 (36%), Positives = 42/85 (49%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
           L L N    G I  +   L  LQ + L  N   G I   L   T L VLD+S N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 193 PSWMGNFSYLQILSMSKNLLEGNIP 217
           P  +G  + L+IL+++ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query: 436 IHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           I GL L    L G IP   S L+ ++S++LS N + G IPP L  + SL   D+SYN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 496 GPIPD 500
           G IP+
Sbjct: 480 GSIPE 484

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 31/91 (34%), Positives = 48/91 (52%)

Query: 249 VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ 308
           ++ L L N  L G IPN   +   L++++L  N+  G IP  +   ++L  L L  N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 309 GPIPHQLCRLRKLGIMDLSHNRLYGSIPACI 339
           G IP  L +L  L I++L+ N L G +PA +
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 6e-08
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 229 LNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRI 287
           L +    L G + + ++ L  ++ + L  N++ G+IP +    ++LE LDL  N+F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 288 PHQINEHSNLRALLLRANYLQGPIPHQL-CRLRKLGIMDLSHNRLYGSIP 336
           P  + + ++LR L L  N L G +P  L  RL      + + N     IP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 26/110 (23%)

Query: 59  LDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGE 118
           L +      G +P ++   L+ L  +N+S NS  GNIP S+  +  L  LD+S N+F G 
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 119 LSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI 168
           + +SL                  GQ       LT L++L L+ N  SG++
Sbjct: 482 IPESL------------------GQ-------LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 24/65 (36%), Positives = 42/65 (64%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
           ++LS N+  G I P+  ++T L++L L  N F+G I + L + T L +L+++ N LSG +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 193 PSWMG 197
           P+ +G
Sbjct: 507 PAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 411 HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES-FSNLKMIESLDLSHNK 469
            +  +DLS   ++G I S I  L  I  +NLS N LSG IP+  F+    +  L+LS+N 
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 470 LNGQIPPQLTELHSLSKFDVSYNNLSGPIP-DKEQFSTFDESSYRGNLHLCGPPINKSCT 528
             G IP     + +L   D+S N LSG IP D   FS+       GN+ +   P   S T
Sbjct: 130 FTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN--SLT 185

Query: 529 NLPKL 533
           NL  L
Sbjct: 186 NLTSL 190

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 54  HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN 113
             L S+++S NS  G +P ++G +   L  +++S NSF G+IP S+ ++  LR L+++ N
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 114 NFAGELSQSL 123
           + +G +  +L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 23/160 (14%)

Query: 147 NYMNLTQLQLLYLDNNHFS----GKIKDGLLRSTELMVLDISNNRLSGHIPSWMG----- 197
                  LQ L L +N       G ++  LLRS+ L  L ++NN L       +      
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKD 134

Query: 198 NFSYLQILSMSKNLLEGNIPVQFNDLL----DLEILNISENNLSGSMISTL-----NLSS 248
               L+ L + +N LEG         L    DL+ LN++ N +  + I  L        +
Sbjct: 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN 194

Query: 249 VEHLYLQNNAL----GGSIPNTFFRGSALETLDLRDNNFS 284
           +E L L NN L      ++  T     +LE L+L DNN +
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 26/56 (46%), Positives = 32/56 (57%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL 470
           LDLS+N LT         L N+  L+LS N L+   PE+FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 439 LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNL 494
           L+LS N L+     +F  L  ++ LDLS N L    P   + L SL   D+S NNL
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 65/266 (24%), Positives = 112/266 (42%), Gaps = 56/266 (21%)

Query: 1   KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLD 60
           + L +   L  LDL+ N+L  N    L    T L  L L NN+ +               
Sbjct: 87  ENLLNLLPLPSLDLNLNRLRSNISELL--ELTNLTSLDLDNNNIT--------------- 129

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
                   ++P  +G++   L  +++S N  E ++PS +  +  L+ LD+S N+ +    
Sbjct: 130 --------DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS---- 176

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
                                  +     NL+ L  L L  N  S  +   +   + L  
Sbjct: 177 ----------------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEE 213

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
           LD+SNN +   + S + N   L  L +S N LE ++P    +L +LE L++S N +S S+
Sbjct: 214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SI 270

Query: 241 ISTLNLSSVEHLYLQNNALGGSIPNT 266
            S  +L+++  L L  N+L  ++P  
Sbjct: 271 SSLGSLTNLRELDLSGNSLSNALPLI 296

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 31/113 (27%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
           LRH   L+ ++LS N + GN P  L                       G+   L  LD+S
Sbjct: 441 LRH---LQSINLSGNSIRGNIPPSL-----------------------GSITSLEVLDLS 474

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
            NSF G +P+++G  L  L  +N++ NS  G +P+++    G R L  ++ NF
Sbjct: 475 YNSFNGSIPESLG-QLTSLRILNLNGNSLSGRVPAAL----GGRLLHRASFNF 522

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 69/287 (24%), Positives = 111/287 (38%), Gaps = 37/287 (12%)

Query: 7   FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNS-FSGFQLTGAQHGLLSLDISKNS 65
            NLK LDLS NK+  + P+ L  N   L+ L L  N      +L      L +LD+S N 
Sbjct: 140 SNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
            + +LP  +  +L  L  +++S NS    + SS++ ++ L  L++S N    E     + 
Sbjct: 198 IS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN--KLEDLPESIG 252

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN 185
           N  +L  LDLSNN        +  +LT L+ L L  N  S  +    +    L++  + N
Sbjct: 253 NLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPL--IALLLLLLELLLN 308

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN 245
             L+                            ++      L   NI  N  + S  +   
Sbjct: 309 LLLT-------------------------LKALELKLNSILLNNNILSNGETSSPEALSI 343

Query: 246 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN 292
           L S+ +L+  +NAL  S  N +   +      L D            
Sbjct: 344 LESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVNQLLEK 390

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	580
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.61
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
PLN03150	623	hypothetical protein; Provisional	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.97
KOG4341	483	consensus F-box protein containing LRR [General fu	97.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.95
KOG4341	483	consensus F-box protein containing LRR [General fu	97.86
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
PRK15386	426	type III secretion protein GogB; Provisional	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.02
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.82
KOG4308	478	consensus LRR-containing protein [Function unknown	93.94
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.69
KOG4308	478	consensus LRR-containing protein [Function unknown	93.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.07
smart00370	26	LRR Leucine-rich repeats, outliers.	93.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.65
smart00370	26	LRR Leucine-rich repeats, outliers.	92.65
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.86
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.5
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	86.27
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.75

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-59  Score=532.90  Aligned_cols=511  Identities=32%  Similarity=0.499  Sum_probs=438.6

Q ss_pred             cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717            3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV   82 (580)
Q Consensus         3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   82 (580)
                      |..+++|+.|+|++|+++|.+|..++..+++|++|+|++|.+++......+++|++|++++|.+.+.+|..+. ++++|+
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~  167 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIG-SFSSLK  167 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHh-cCCCCC
Confidence            5678999999999999998999998889999999999999998753335788999999999999988888775 799999


Q ss_pred             EEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCc
Q 036717           83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNN  162 (580)
Q Consensus        83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (580)
                      +|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence            99999999998999999999999999999999988888765 78999999999999999889999999999999999999


Q ss_pred             cccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCC
Q 036717          163 HFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIS  242 (580)
Q Consensus       163 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  242 (580)
                      .+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..+.
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence            99988999999999999999999999988999999999999999999999988999999999999999999999887776


Q ss_pred             cc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCC
Q 036717          243 TL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKL  321 (580)
Q Consensus       243 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  321 (580)
                      .+ .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|..+..+++|
T Consensus       327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L  406 (968)
T PLN00113        327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL  406 (968)
T ss_pred             hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence            55 88999999999999998899999999999999999999998999999888999999999999998999999999999


Q ss_pred             CEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccch--hhcccccccccccchhhhh------ccccEE
Q 036717          322 GIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIR--DYYNSTVQLRLDESDLRWL------VKQVEV  393 (580)
Q Consensus       322 ~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~  393 (580)
                      +.|++++|++++.+|..+...+       .+..+++.++.+......  .....+..+.+..+.+...      ...++.
T Consensus       407 ~~L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~  479 (968)
T PLN00113        407 RRVRLQDNSFSGELPSEFTKLP-------LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN  479 (968)
T ss_pred             CEEECcCCEeeeECChhHhcCC-------CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceE
Confidence            9999999999988888776643       344444444444332211  1122233333333322110      122344


Q ss_pred             EEeecccccee-cc--cccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcc
Q 036717          394 NFMTKNRYESY-KG--VILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL  470 (580)
Q Consensus       394 ~~~~~~~~~~~-~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  470 (580)
                      ..++.+++... +.  ..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|+++++|+.|||++|++
T Consensus       480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL  559 (968)
T ss_pred             EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence            44555554321 11  2377899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCCCCCC
Q 036717          471 NGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPP  522 (580)
Q Consensus       471 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  522 (580)
                      ++.+|..+..+++|++|++++|+++|.+|...++.++...++.||+.+||.+
T Consensus       560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.7e-54  Score=487.43  Aligned_cols=501  Identities=32%  Similarity=0.478  Sum_probs=433.3

Q ss_pred             CCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC----CCCCCccEEEccCCCCCccCChhHhhcCCCC
Q 036717            6 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT----GAQHGLLSLDISKNSFTGELPQNMGIVLQKL   81 (580)
Q Consensus         6 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L   81 (580)
                      ..+++.|++++|.++|.++.. +..+++|+.|+|++|.+++. ++    ..+++|++|++++|.+++.+|..   .+++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L  142 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNL  142 (968)
T ss_pred             CCcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCcc---ccCCC
Confidence            457999999999999888765 45999999999999999863 33    27889999999999999888863   47899


Q ss_pred             cEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccC
Q 036717           82 VYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDN  161 (580)
Q Consensus        82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  161 (580)
                      ++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY  221 (968)
T ss_pred             CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence            999999999999999999999999999999999988888765 7999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccC
Q 036717          162 NHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI  241 (580)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  241 (580)
                      |.+.+..|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+
T Consensus       222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence            99999999999999999999999999999999999999999999999999998999999999999999999999998777


Q ss_pred             Ccc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCC
Q 036717          242 STL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRK  320 (580)
Q Consensus       242 ~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  320 (580)
                      ..+ .+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.+++
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence            665 8899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchh--hcccccccccccchhhh-------hcccc
Q 036717          321 LGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRD--YYNSTVQLRLDESDLRW-------LVKQV  391 (580)
Q Consensus       321 L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~  391 (580)
                      |+.+++++|.+.+.+|..+...       .+++.+++.++.+....+..  ....+..++++.+.+..       ....+
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~-------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGAC-------RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCC-------CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence            9999999999999999887764       35566666666554322222  22334445555444332       22334


Q ss_pred             EEEEeeccccceecc--cccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCc
Q 036717          392 EVNFMTKNRYESYKG--VILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK  469 (580)
Q Consensus       392 ~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  469 (580)
                      +...+..+.+.....  ...++|+.|++++|++++.+|..+.++++|+.|+|++|.+++.+|..++++++|++|+|++|+
T Consensus       455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence            445555554432111  114689999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCchhhcCCCCCCEEeccCCcccccCCCC-cccCCcCccccCCCCCCC
Q 036717          470 LNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK-EQFSTFDESSYRGNLHLC  519 (580)
Q Consensus       470 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc  519 (580)
                      +++.+|..+..+++|++|||++|++++.+|.. ..+..+...++.+|...+
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999999999999999999999999965 344556666777777554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-42  Score=331.84  Aligned_cols=395  Identities=23%  Similarity=0.263  Sum_probs=277.7

Q ss_pred             cEEEccCCcccCCCCC---C-CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEc
Q 036717           35 EVLYLINNSFSGFQLT---G-AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDV  110 (580)
Q Consensus        35 ~~L~L~~n~l~~~~~~---~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  110 (580)
                      +.|+++++.+..+...   + -...-+.||+++|.+. .+....|.++++|+.+++.+|.++ .+|...+...+|+.|+|
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            4566666666554211   1 2234456777777776 454555557777777777777776 56665555566777777


Q ss_pred             ccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCC
Q 036717          111 STNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSG  190 (580)
Q Consensus       111 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  190 (580)
                      .+|.|+ ++..+.+..++.|+.|||+.|.|+...-..|..-.++++|+|++|.|+..-.+.|.++.+|..|.|+.|+++.
T Consensus       133 ~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt  211 (873)
T KOG4194|consen  133 RHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT  211 (873)
T ss_pred             eccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence            777776 5555555667777777777777765555566666677777777777776666667777777777777777776


Q ss_pred             CCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccC
Q 036717          191 HIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFR  269 (580)
Q Consensus       191 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~  269 (580)
                      ..+..|.++++|+.|+|..|++.-.-.-.|.++++|+.|.+..|.+.......| .+.++++|+|..|+++..-..++.+
T Consensus       212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg  291 (873)
T KOG4194|consen  212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG  291 (873)
T ss_pred             cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence            666667777777777777777663334566777777777777777776666655 6777777777777777666666777


Q ss_pred             CCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCC
Q 036717          270 GSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN  349 (580)
Q Consensus       270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~  349 (580)
                      ++.|+.|++++|.|....++.+..+++|+.|+|+.|.|+...++.|..+..|+.|++++|+++. +    ...       
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l----~e~-------  359 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-L----AEG-------  359 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-H----Hhh-------
Confidence            7777777777777776666666667777777777777776666677777777777777777641 1    100       


Q ss_pred             CCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCC--
Q 036717          350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP--  427 (580)
Q Consensus       350 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--  427 (580)
                                                                           .|.  .+++|++|||++|.++..+.  
T Consensus       360 -----------------------------------------------------af~--~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  360 -----------------------------------------------------AFV--GLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             -----------------------------------------------------HHH--HhhhhhhhcCcCCeEEEEEecc
Confidence                                                                 011  16788889999998876544  


Q ss_pred             -cccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          428 -SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       428 -~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                       ..|.+|++|+.|.|.+|++..+...+|.++..||+|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.|.-
T Consensus       385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence             457789999999999999987777889999999999999999988888899888 899888888888887743

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-41  Score=324.48  Aligned_cols=404  Identities=21%  Similarity=0.229  Sum_probs=344.3

Q ss_pred             CCCCCC-CccEEEccCCCCCccCChhH--hhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHh
Q 036717           49 LTGAQH-GLLSLDISKNSFTGELPQNM--GIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT  125 (580)
Q Consensus        49 ~~~~~~-~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  125 (580)
                      ++..|+ +-+.||.+++.+. .+...-  +.-.+.-+.|++++|++..+.+..|.++++|+.+++.+|.++ .||... .
T Consensus        46 cpa~c~c~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~  122 (873)
T KOG4194|consen   46 CPATCPCNTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-H  122 (873)
T ss_pred             CCCcCCCCceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-c
Confidence            444444 4467899998775 321111  112346678999999999999999999999999999999998 899743 4


Q ss_pred             CCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEE
Q 036717          126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQIL  205 (580)
Q Consensus       126 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  205 (580)
                      ...+|+.|+|.+|.|+....+.++.++.|+.|||+.|.|+......|..-.++++|+|++|+|+......|..+.+|..|
T Consensus       123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL  202 (873)
T ss_pred             cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence            45679999999999998888899999999999999999997766778888999999999999998888899999999999


Q ss_pred             EcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc
Q 036717          206 SMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS  284 (580)
Q Consensus       206 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  284 (580)
                      .|+.|+++...+..|..++.|+.|+|..|.|.......| .+++|+.|.+..|.+.......|..+.++++|+|+.|+++
T Consensus       203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ  282 (873)
T ss_pred             ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence            999999998888899999999999999999987644445 8999999999999999888899999999999999999999


Q ss_pred             ccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCC
Q 036717          285 GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGN  364 (580)
Q Consensus       285 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~  364 (580)
                      ..-..|+.+++.|+.|+++.|.|..+-+..+..+++|++||+++|+++..-+..+..                       
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~-----------------------  339 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV-----------------------  339 (873)
T ss_pred             hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH-----------------------
Confidence            888889999999999999999999888999999999999999999998433333322                       


Q ss_pred             ccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccC
Q 036717          365 VDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYN  444 (580)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  444 (580)
                                                                  +..|++|.|++|.+...-...|..+++|++|||++|
T Consensus       340 --------------------------------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  340 --------------------------------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             --------------------------------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence                                                        678999999999999888889999999999999999


Q ss_pred             cceecccc---cccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCCCCC
Q 036717          445 FLSGSIPE---SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGP  521 (580)
Q Consensus       445 ~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  521 (580)
                      .++..+.+   .|.+|++|+.|+|.+|+|..+...+|.++++|+.|||.+|.+...-|.+-.-..+++.-+..-..+|++
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC  455 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence            99987764   588999999999999999977778999999999999999999876665422223444444445567765


Q ss_pred             C
Q 036717          522 P  522 (580)
Q Consensus       522 ~  522 (580)
                      .
T Consensus       456 q  456 (873)
T KOG4194|consen  456 Q  456 (873)
T ss_pred             c
Confidence            4

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.2e-40  Score=305.93  Aligned_cols=406  Identities=27%  Similarity=0.434  Sum_probs=227.0

Q ss_pred             ccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717            4 RHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGELPQNMGIVLQKLV   82 (580)
Q Consensus         4 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   82 (580)
                      .++..+++|++++|+++ .+|+++. .+.+++.++.++|+++..+.. ....+|+.++.++|.+. ++|++++ .+-.++
T Consensus        65 ~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~-~~~~l~  140 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIG-RLLDLE  140 (565)
T ss_pred             hcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHH-HHhhhh
Confidence            45666777777777777 6666654 566777777777766654221 24455556666666555 5555554 344555


Q ss_pred             EEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCc
Q 036717           83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNN  162 (580)
Q Consensus        83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (580)
                      .++..+|+++ ..|..+..+.+|..+++.+|.+. ..|+.... ++.|++||...|-++ .+|+.++.+.+|.-|++..|
T Consensus       141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence            5555555555 34555555555555555555555 44444332 555555555555443 44455555555555555555


Q ss_pred             cccccccccccCCCCCCEEEcccCCCCCCCchhhh-cCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccC
Q 036717          163 HFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG-NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI  241 (580)
Q Consensus       163 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  241 (580)
                      ++. ..| .|.++..|++++++.|++. .+|.... .++++..||+..|+++ ..|+.+.-+.+|..||+++|.+++.+.
T Consensus       217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc
Confidence            554 333 3444444444444444444 2333222 4444444444444444 444444444444444554444444444


Q ss_pred             CccCCCCCcEEEeeCC----------------------------------------------------------------
Q 036717          242 STLNLSSVEHLYLQNN----------------------------------------------------------------  257 (580)
Q Consensus       242 ~~~~~~~L~~L~l~~n----------------------------------------------------------------  257 (580)
                      ...++ .|+.|-+.+|                                                                
T Consensus       293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~  371 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD  371 (565)
T ss_pred             ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence            43333 4444444444                                                                


Q ss_pred             -cCcccCChhccCCC---CccEEeCCCCcCcccCchhhccCcCcce-eecccccccccCcccccCCCCCCEEEeeCCeec
Q 036717          258 -ALGGSIPNTFFRGS---ALETLDLRDNNFSGRIPHQINEHSNLRA-LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY  332 (580)
Q Consensus       258 -~l~~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  332 (580)
                       +++ .+|.......   -...++++.|++. ++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|++++|.+.
T Consensus       372 ~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln  448 (565)
T KOG0472|consen  372 KQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN  448 (565)
T ss_pred             cccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh
Confidence             333 2222111111   1334444444444 34443333333322 22222222 345555566666666666666553


Q ss_pred             CccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccc
Q 036717          333 GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM  412 (580)
Q Consensus       333 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  412 (580)
                       .+|..++.                                                                   +..|
T Consensus       449 -~LP~e~~~-------------------------------------------------------------------lv~L  460 (565)
T KOG0472|consen  449 -DLPEEMGS-------------------------------------------------------------------LVRL  460 (565)
T ss_pred             -hcchhhhh-------------------------------------------------------------------hhhh
Confidence             44443332                                                                   4567


Q ss_pred             cEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCC
Q 036717          413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN  492 (580)
Q Consensus       413 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  492 (580)
                      +.||+|.|++. .+|..+-.+..++.+-.++|++....|..+.++.+|.+|||.+|.+. .+|..+++|++|++|++.+|
T Consensus       461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCC
Confidence            88888888887 77777777777777777778888767777888888888888888887 67888888888888888888


Q ss_pred             ccc
Q 036717          493 NLS  495 (580)
Q Consensus       493 ~l~  495 (580)
                      ++.
T Consensus       539 pfr  541 (565)
T KOG0472|consen  539 PFR  541 (565)
T ss_pred             ccC
Confidence            887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=295.86  Aligned_cols=452  Identities=26%  Similarity=0.358  Sum_probs=291.5

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN   85 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~   85 (580)
                      ..++.+++++|.+. .+.... .++..|.+|++.+|++...+.. ..+..++.++.++|++. ++|+.++ ...+++.++
T Consensus        45 v~l~~lils~N~l~-~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~-s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIG-SLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchh-hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHh-hhhhhhhhh
Confidence            34556666666665 343333 3566666666666666554211 24455566666666666 6666665 456666666


Q ss_pred             cccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccc
Q 036717           86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS  165 (580)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (580)
                      .++|.+. .+|+.++.+-.|+.++..+|++. ..|.++ ..+.++..+++.+|++.... +..-+++.|++|+...|-+.
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~-~~~i~m~~L~~ld~~~N~L~  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALP-ENHIAMKRLKHLDCNSNLLE  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCC-HHHHHHHHHHhcccchhhhh
Confidence            6666666 45566666666666666666666 555554 45666666666666666333 33333666666666666665


Q ss_pred             ccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhc-cCCCCCcEEEccCCcCccccCCcc
Q 036717          166 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQF-NDLLDLEILNISENNLSGSMISTL  244 (580)
Q Consensus       166 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~  244 (580)
                       .+|..++.+.+|.-|++..|++. ..| .|.++..|+++.++.|++. .+|... ..++.+.+||++.|+++..+....
T Consensus       197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c  272 (565)
T KOG0472|consen  197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC  272 (565)
T ss_pred             -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH
Confidence             56666666677777777777666 445 4666666777777777666 334333 366777777777777776666665


Q ss_pred             CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc-------------------------------------c-
Q 036717          245 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG-------------------------------------R-  286 (580)
Q Consensus       245 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------------------------~-  286 (580)
                      .+.+|++||+++|.++ ..|..++++ +|+.|.+.+|.+..                                     . 
T Consensus       273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            6667777777777776 456666666 67777777776520                                     0 


Q ss_pred             Cchhh---ccCcCcceeecccccccccCcccccCC--CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCC
Q 036717          287 IPHQI---NEHSNLRALLLRANYLQGPIPHQLCRL--RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD  361 (580)
Q Consensus       287 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~  361 (580)
                      .+..+   ....+.+.|+++.-+++....+.|..-  .-...++++.|++. ++|..+....-..      ..       
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv------T~-------  416 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV------TD-------  416 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH------HH-------
Confidence            00000   112345666666666663333333221  12678999999996 7887665432100      00       


Q ss_pred             CCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEec
Q 036717          362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNL  441 (580)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  441 (580)
                                     +.++.+.+.|.+...               ..+++|+.|+|++|-+. .+|.+++.+..|+.||+
T Consensus       417 ---------------l~lsnn~isfv~~~l---------------~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Lnl  465 (565)
T KOG0472|consen  417 ---------------LVLSNNKISFVPLEL---------------SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNL  465 (565)
T ss_pred             ---------------HHhhcCccccchHHH---------------Hhhhcceeeecccchhh-hcchhhhhhhhhheecc
Confidence                           001111111111100               22788999999999998 88999999999999999


Q ss_pred             ccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCC
Q 036717          442 SYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHL  518 (580)
Q Consensus       442 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l  518 (580)
                      |+|+|. .+|+....+..||.+-.++|++....|+.+.+|.+|.+|||.+|.+....|.-.....+......|||+-
T Consensus       466 S~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  466 SFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            999998 8999999999999999999999988888899999999999999999966555566677777777777754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=2.6e-36  Score=294.29  Aligned_cols=369  Identities=25%  Similarity=0.390  Sum_probs=310.9

Q ss_pred             CCCccEEEccCCCCC-ccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717           53 QHGLLSLDISKNSFT-GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI  131 (580)
Q Consensus        53 ~~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  131 (580)
                      ++-.+-+|+++|.++ +..|..+- .+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~-qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVE-QMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHH-HhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence            344566778888887 46777774 7899999999999988 78999999999999999999988 565554 7889999


Q ss_pred             EEEcccccCCC-cCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccC
Q 036717          132 WLDLSNNNFDG-QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN  210 (580)
Q Consensus       132 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  210 (580)
                      .+++..|++.. .+|+.+..+..|..|||++|++. ..|..+..-+++-.|+||+|+|..+....|.+++.|-.|||++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            99999998863 46778889999999999999998 67888888899999999999998655567788999999999999


Q ss_pred             cCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCc-ccCChhccCCCCccEEeCCCCcCcccCc
Q 036717          211 LLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALG-GSIPNTFFRGSALETLDLRDNNFSGRIP  288 (580)
Q Consensus       211 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~  288 (580)
                      ++. .+|.....+..|++|+|++|.+........ .+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence            997 677788999999999999998875444433 6788888999887543 357888999999999999999998 889


Q ss_pred             hhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccch
Q 036717          289 HQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIR  368 (580)
Q Consensus       289 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  368 (580)
                      +.+..+++|+.|+|++|+|+ .+.-......+|+.|++|.|+++ .+|+++..                           
T Consensus       239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK---------------------------  289 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK---------------------------  289 (1255)
T ss_pred             HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence            99999999999999999998 44444555678999999999997 78887765                           


Q ss_pred             hhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce-eeCCcccccccCCCeEecccCcce
Q 036717          369 DYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT-GNIPSEIGDLQNIHGLNLSYNFLS  447 (580)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~  447 (580)
                                                              ++.|+.|.+.+|+++ +-+|..++.+.+|+++..++|.+.
T Consensus       290 ----------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  290 ----------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             ----------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence                                                    667888888899876 358888999999999999999988


Q ss_pred             ecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCC
Q 036717          448 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP  499 (580)
Q Consensus       448 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  499 (580)
                       ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|++||+..|+=---.|
T Consensus       330 -lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  330 -LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             -cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence             89999999999999999999988 689999999999999999997554444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=4.8e-35  Score=285.53  Aligned_cols=370  Identities=25%  Similarity=0.374  Sum_probs=323.3

Q ss_pred             CCCCcEEEcccCcCc-cccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717           78 LQKLVYMNISKNSFE-GNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL  156 (580)
Q Consensus        78 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  156 (580)
                      +|-.+-.|+++|.++ +..|.....+++++-|.|....+. .+|..+ +.|.+|++|.+++|++. .+...++.++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence            667888999999999 579999999999999999999998 899986 89999999999999997 45577889999999


Q ss_pred             EeccCccccc-cccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCc
Q 036717          157 LYLDNNHFSG-KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN  235 (580)
Q Consensus       157 L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  235 (580)
                      +.+..|++.. -+|..+..+..|+.||||+|++. ..|..+..-+++-.|+|++|+|..+....|.++..|-.|||++|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            9999998863 46778889999999999999998 778889999999999999999986666677899999999999999


Q ss_pred             CccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc-ccCchhhccCcCcceeecccccccccCccc
Q 036717          236 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS-GRIPHQINEHSNLRALLLRANYLQGPIPHQ  314 (580)
Q Consensus       236 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  314 (580)
                      +...+|..-.+..|++|.|++|.+..---..+..+++|++|.+++.+-+ .-+|..+..+.+|..++++.|.+. .+|++
T Consensus       162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            9999998889999999999999876443344556788999999987644 458889999999999999999998 89999


Q ss_pred             ccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEE
Q 036717          315 LCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVN  394 (580)
Q Consensus       315 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (580)
                      +..+++|+.|++|+|+++. +..+...                                                     
T Consensus       241 ly~l~~LrrLNLS~N~ite-L~~~~~~-----------------------------------------------------  266 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITE-LNMTEGE-----------------------------------------------------  266 (1255)
T ss_pred             HhhhhhhheeccCcCceee-eeccHHH-----------------------------------------------------
Confidence            9999999999999999972 2211111                                                     


Q ss_pred             EeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCccee-cccccccCcccCCEEECCCCccccc
Q 036717          395 FMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG-SIPESFSNLKMIESLDLSHNKLNGQ  473 (580)
Q Consensus       395 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~  473 (580)
                                    -.+|++|+||.|+++ .+|+++..++.|+.|++.+|+++- -+|..++.+.+|+.+..++|.+. .
T Consensus       267 --------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-l  330 (1255)
T KOG0444|consen  267 --------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-L  330 (1255)
T ss_pred             --------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-c
Confidence                          247889999999999 899999999999999999999873 48999999999999999999998 8


Q ss_pred             CchhhcCCCCCCEEeccCCcccccCCCC-cccCCcCccccCCCCCCCCCCC
Q 036717          474 IPPQLTELHSLSKFDVSYNNLSGPIPDK-EQFSTFDESSYRGNLHLCGPPI  523 (580)
Q Consensus       474 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~  523 (580)
                      .|+.+..+..|+.|.|+.|.+. +.|.+ +.+..+...+...||.+.-||-
T Consensus       331 VPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             CchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            9999999999999999999998 56665 4456677788899999887764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=8.9e-34  Score=288.98  Aligned_cols=452  Identities=27%  Similarity=0.340  Sum_probs=290.7

Q ss_pred             CCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCC-CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717            9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTG-AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS   87 (580)
Q Consensus         9 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~   87 (580)
                      ++.|+++.|-+- ..|-.+.++.-+|+.|++++|.+..++.+- .+.+|+.|+++.|.+. ..|.... ++.+|++++|.
T Consensus        23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~-~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCS-NMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhh-hhhcchhheec
Confidence            566677777655 445555556666777777777777664442 5667777777777776 6665443 67777777777


Q ss_pred             cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc
Q 036717           88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK  167 (580)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (580)
                      +|.+. ..|..+..+++|++|+++.|.+. .+|..+ ..+..+..+..++|.-.    ..++... ++.+++..|.+.+.
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~~~  171 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLGGS  171 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcccc
Confidence            77776 66777777777777777777776 666654 56677777777777211    1122222 67777777777777


Q ss_pred             ccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCC
Q 036717          168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS  247 (580)
Q Consensus       168 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  247 (580)
                      ++..+..+..  .|+|++|.+. .  ..+..+.+|+.|..+.|++....    -.-++++.|+.+.|.++... ..+...
T Consensus       172 ~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~-~~p~p~  241 (1081)
T KOG0618|consen  172 FLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLD-VHPVPL  241 (1081)
T ss_pred             hhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeec-cccccc
Confidence            6666655555  6888888876 2  33567778888888888776321    23468899999999988333 333567


Q ss_pred             CCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717          248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS  327 (580)
Q Consensus       248 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  327 (580)
                      +|++++++.|+++ .+|+++..+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. .+|.....++.|++||+.
T Consensus       242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence            8999999999998 56799999999999999999996 78888888999999999999998 677778889999999999


Q ss_pred             CCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchh--hccccccccc-----ccchhhhh--ccccEEEEeec
Q 036717          328 HNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRD--YYNSTVQLRL-----DESDLRWL--VKQVEVNFMTK  398 (580)
Q Consensus       328 ~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~  398 (580)
                      .|++. ..|+.+...     .+.++..+..+...+.......  -...+..+.+     .+..+.-+  ...+++..++.
T Consensus       319 ~N~L~-~lp~~~l~v-----~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  319 SNNLP-SLPDNFLAV-----LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY  392 (1081)
T ss_pred             hcccc-ccchHHHhh-----hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence            99996 666633221     1111222221111111111000  0000111111     11111111  22344555556


Q ss_pred             cccceecccc---cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717          399 NRYESYKGVI---LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  475 (580)
Q Consensus       399 ~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  475 (580)
                      |+++.|+...   +..|+.|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-
T Consensus       393 NrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l  469 (1081)
T KOG0618|consen  393 NRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL  469 (1081)
T ss_pred             cccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence            6666555432   344556666666666 55666666666666666666666 455 55666666666666666654322


Q ss_pred             hhhcCCCCCCEEeccCCc
Q 036717          476 PQLTELHSLSKFDVSYNN  493 (580)
Q Consensus       476 ~~l~~l~~L~~L~Ls~N~  493 (580)
                      ..-...+.|++||+++|.
T Consensus       470 ~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  470 PEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhCCCcccceeeccCCc
Confidence            222222566666666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-33  Score=285.66  Aligned_cols=425  Identities=30%  Similarity=0.417  Sum_probs=282.9

Q ss_pred             cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCccCChhHhhcCCCC
Q 036717            3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGELPQNMGIVLQKL   81 (580)
Q Consensus         3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L   81 (580)
                      .+++-+|+.||+++|.+. .+|..+- .+.+|+.|+++.|.+...+.. ..+++|+++.|.+|.+. ..|..+. .+.+|
T Consensus        41 ~~~~v~L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl  116 (1081)
T KOG0618|consen   41 VEKRVKLKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNL  116 (1081)
T ss_pred             hhheeeeEEeeccccccc-cCCchhh-hHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHH-hhhcc
Confidence            345556999999999998 8888765 789999999999999876533 37789999999999988 8888875 78999


Q ss_pred             cEEEcccCcCccccchhhhcCCCCCEEEcccC-------------------cCccccchHHHhCCCCCcEEEcccccCCC
Q 036717           82 VYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN-------------------NFAGELSQSLVTNCFSLIWLDLSNNNFDG  142 (580)
Q Consensus        82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-------------------~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  142 (580)
                      ++|++++|.+. .+|..+..+..++.+..++|                   .+.+.++.+. ..+..  .|+|.+|.+..
T Consensus       117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~~  192 (1081)
T KOG0618|consen  117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEMEV  192 (1081)
T ss_pred             cccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch-hhhhe--eeecccchhhh
Confidence            99999999987 66766666555555555555                   3333333332 22223  48888887762


Q ss_pred             cCCccccCCCC--------------------CCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCC
Q 036717          143 QIFPNYMNLTQ--------------------LQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYL  202 (580)
Q Consensus       143 ~~~~~~~~l~~--------------------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  202 (580)
                         ..+..+.+                    |+.|+.+.|.+....+.  ..-.+|+.++++.|+++ .+|+|+..+.+|
T Consensus       193 ---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nl  266 (1081)
T KOG0618|consen  193 ---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANL  266 (1081)
T ss_pred             ---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccc
Confidence               12233333                    34444444444322111  12345677777777776 445777777777


Q ss_pred             CEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccC-CC-CccEEeCCC
Q 036717          203 QILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR-GS-ALETLDLRD  280 (580)
Q Consensus       203 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~-~L~~L~l~~  280 (580)
                      +.++..+|+++ .+|..+...++|+.+.+.+|.+...++.....++|++|+|..|.+. ..|+.+.. .. .|+.|+.+.
T Consensus       267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~  344 (1081)
T KOG0618|consen  267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSS  344 (1081)
T ss_pred             eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhh
Confidence            77777777774 5566666666777777777777766666556777777777777776 34433222 21 245555555


Q ss_pred             CcCcccCch-hhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhh-hhcccccCCCCccccccC
Q 036717          281 NNFSGRIPH-QINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACIT-NSLFWKVGNESLYQLDEE  358 (580)
Q Consensus       281 n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~~~~~~~~~~~~l~~~  358 (580)
                      |++. ..|. .=...+.|+.|++.+|.++...-..+.+.++|+.|++++|++. ++|+... ++       +.++.+.++
T Consensus       345 n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kl-------e~LeeL~LS  415 (1081)
T KOG0618|consen  345 NKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKL-------EELEELNLS  415 (1081)
T ss_pred             cccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhch-------HHhHHHhcc
Confidence            5554 2221 1122456777888888888777677777888888888888885 5555332 22       234444444


Q ss_pred             CCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCe
Q 036717          359 GADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHG  438 (580)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  438 (580)
                      |+.+..++.                      ..               ..++.|++|...+|++. ..| ++..+++|+.
T Consensus       416 GNkL~~Lp~----------------------tv---------------a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  416 GNKLTTLPD----------------------TV---------------ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             cchhhhhhH----------------------HH---------------HhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            444333221                      00               12678999999999998 667 7999999999


Q ss_pred             EecccCcceec-ccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCC
Q 036717          439 LNLSYNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN  492 (580)
Q Consensus       439 L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  492 (580)
                      +|+|.|+++.. +|..... ++|++|||++|.=...-...|..+.++...++.-|
T Consensus       457 lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             EecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999999854 3443332 89999999999844455677888888888888877

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=2.9e-29  Score=233.07  Aligned_cols=406  Identities=20%  Similarity=0.202  Sum_probs=264.7

Q ss_pred             CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEccc-CcCccccchHHHhCCCCC
Q 036717           52 AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVST-NNFAGELSQSLVTNCFSL  130 (580)
Q Consensus        52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L  130 (580)
                      -.+.-+.++|..|+|+ .||...|+.+++||.|||++|.|+.+.|++|..+++|..|-+.+ |+|+ .+|...|.++..+
T Consensus        65 LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             CCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            3457788999999999 89999999999999999999999999999999999988887766 8888 8999999999999


Q ss_pred             cEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC------------CCCchhhhc
Q 036717          131 IWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS------------GHIPSWMGN  198 (580)
Q Consensus       131 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~~~~~  198 (580)
                      +.|.+.-|++.-...+.|..++++..|.+.+|.+..+-...|..+..++.+.+..|.+.            ...|..+++
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            99999999998777788999999999999999998555558889999999999888732            112223333


Q ss_pred             CCCCCEEEcccCcCCCcCchhccCCCCCcEE---EccCCcCccccCC-cc-CCCCCcEEEeeCCcCcccCChhccCCCCc
Q 036717          199 FSYLQILSMSKNLLEGNIPVQFNDLLDLEIL---NISENNLSGSMIS-TL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL  273 (580)
Q Consensus       199 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L---~l~~n~l~~~~~~-~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  273 (580)
                      ........+.+.++..+.+..|...  ++.+   -.+.+......+. .+ .+++|++|++++|+++++-+.+|.+...+
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence            3334444444444443333333221  1111   1122222222222 22 78888888888888888888888888888


Q ss_pred             cEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccC-hhhhhhccc--ccCC-
Q 036717          274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP-ACITNSLFW--KVGN-  349 (580)
Q Consensus       274 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~~--~~~~-  349 (580)
                      ++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|..|.+-.|++...-- .++..+.-.  ..++ 
T Consensus       301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~  380 (498)
T KOG4237|consen  301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP  380 (498)
T ss_pred             hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence            888888888876666677888888888888888888888888888888888888887743211 122211100  0000 


Q ss_pred             -----CCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc-EEEccCCcce
Q 036717          350 -----ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA-GLDLSSNELT  423 (580)
Q Consensus       350 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~  423 (580)
                           ..+.++.+....+++.... ..                   .+........    -...++-+. +...|+..++
T Consensus       381 ~Cq~p~~~~~~~~~dv~~~~~~c~-~~-------------------ee~~~~~s~~----cP~~c~c~~tVvRcSnk~lk  436 (498)
T KOG4237|consen  381 RCQSPGFVRQIPISDVAFGDFRCG-GP-------------------EELGCLTSSP----CPPPCTCLDTVVRCSNKLLK  436 (498)
T ss_pred             CCCCCchhccccchhccccccccC-Cc-------------------cccCCCCCCC----CCCCcchhhhhHhhcccchh
Confidence                 0011111111111110000 00                   0000000000    000011121 2334444444


Q ss_pred             eeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCC
Q 036717          424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN  492 (580)
Q Consensus       424 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  492 (580)
                       .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+++|+++..--..|.+++.|.+|-|++|
T Consensus       437 -~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  437 -LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             -hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence             4443332  34567778888887 56655  56677 7888888887666677788888888888776

>PLN03210 Resistant to P

Probab=99.93  E-value=3.1e-24  Score=244.07  Aligned_cols=347  Identities=18%  Similarity=0.212  Sum_probs=181.0

Q ss_pred             CchHHhhCCCCCcEEEccCCcccCC-----CCCC----CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCcc
Q 036717           23 FPTWLLENNTKLEVLYLINNSFSGF-----QLTG----AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEG   93 (580)
Q Consensus        23 ~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~   93 (580)
                      +....|.++++|+.|.+..+.....     ..+.    ..++|+.|++.++.+. .+|..+  .+.+|+.|++++|++. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence            4455566777777777765532210     0111    2234666666666655 555554  2456666666666655 


Q ss_pred             ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccccccc
Q 036717           94 NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLL  173 (580)
Q Consensus        94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  173 (580)
                      .++..+..+++|+.|+|+++.....+|.  +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ 
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            3455555666666666665543334553  3455666666666655444555555566666666666553333444433 


Q ss_pred             CCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEE
Q 036717          174 RSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLY  253 (580)
Q Consensus       174 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  253 (580)
                      ++++|+.|++++|.....+|..   .++|+.|++++|.+. .+|..+ .+++|+.|.+.++.......            
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~------------  764 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE------------  764 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccc------------
Confidence            4555666666555433333321   234555555555544 333322 34444444444322111000            


Q ss_pred             eeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecC
Q 036717          254 LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG  333 (580)
Q Consensus       254 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  333 (580)
                          .+....+..+...++|+.|++++|...+.+|.+++.+++|+.|++++|..-+.+|... .+++|+.|++++|....
T Consensus       765 ----~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        765 ----RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             ----cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence                0000111112223456666666665555566666666666666666654333445443 45666666666654322


Q ss_pred             ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc
Q 036717          334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA  413 (580)
Q Consensus       334 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  413 (580)
                      .+|..                                                                      ..+++
T Consensus       840 ~~p~~----------------------------------------------------------------------~~nL~  849 (1153)
T PLN03210        840 TFPDI----------------------------------------------------------------------STNIS  849 (1153)
T ss_pred             ccccc----------------------------------------------------------------------ccccC
Confidence            22210                                                                      23556


Q ss_pred             EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCc
Q 036717          414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK  469 (580)
Q Consensus       414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  469 (580)
                      .|+|++|.++ .+|..+..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus       850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            6666666666 556666666666666666643333455556666666666666664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.93  E-value=3.1e-24  Score=244.12  Aligned_cols=342  Identities=20%  Similarity=0.244  Sum_probs=249.8

Q ss_pred             CChhHhhcCCCCcEEEcccCc------CccccchhhhcCC-CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCC
Q 036717           70 LPQNMGIVLQKLVYMNISKNS------FEGNIPSSIAKMQ-GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDG  142 (580)
Q Consensus        70 ~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  142 (580)
                      +....|..+++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+  ...+|+.|++.+|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence            345556678888888886553      2334566676664 5888888888776 677654  4678888888888876 


Q ss_pred             cCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccC
Q 036717          143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFND  222 (580)
Q Consensus       143 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  222 (580)
                      .++..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ .
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            4566677888888888887654445553 6778888888888877666778888888888888888875444566544 6


Q ss_pred             CCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc-------ccCchhhccCc
Q 036717          223 LLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS-------GRIPHQINEHS  295 (580)
Q Consensus       223 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~~~  295 (580)
                      +++|+.|++++|......+.  ...+|+.|++++|.+. .+|..+ .+++|+.|++.++...       ...+......+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            78888888888765443332  2467888888888876 556544 4677888887764321       11222233456


Q ss_pred             CcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhccccc
Q 036717          296 NLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTV  375 (580)
Q Consensus       296 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  375 (580)
                      +|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+                                    
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------  822 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------  822 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence            88888998887777788888888889999988876544555321                                    


Q ss_pred             ccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccccccc
Q 036717          376 QLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFS  455 (580)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  455 (580)
                                                      .+++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++.
T Consensus       823 --------------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~  866 (1153)
T PLN03210        823 --------------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE  866 (1153)
T ss_pred             --------------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh
Confidence                                            1678999999998765556553   368999999999998 6899999


Q ss_pred             CcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCc
Q 036717          456 NLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNN  493 (580)
Q Consensus       456 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  493 (580)
                      .+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus       867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99999999999955444678888899999999999885

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=7e-27  Score=217.30  Aligned_cols=401  Identities=19%  Similarity=0.236  Sum_probs=278.5

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      ..+|-++-.++ ++|..+   .+.-..++|..|+|+.+.|.+|+.+++|+.|||++|+|+ .|.+..|.++..|..|-+.
T Consensus        49 ~~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvly  123 (498)
T KOG4237|consen   49 GIVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLY  123 (498)
T ss_pred             ceEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhh
Confidence            45677777777 888766   467889999999999888899999999999999999999 7777788999988777665


Q ss_pred             c-ccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC--
Q 036717          137 N-NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE--  213 (580)
Q Consensus       137 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--  213 (580)
                      + |+|+......|.++..++.|.+..|++.-...+.|..++++..|.+..|.+...--..|..+..++.+.+..|.+.  
T Consensus       124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence            5 9999777778999999999999999998788889999999999999999988444448888999999999888732  


Q ss_pred             ----------CcCchhccCCCCCcEEEccCCcCccccCCccCCC--CCcEEEeeCCcCcccCC-hhccCCCCccEEeCCC
Q 036717          214 ----------GNIPVQFNDLLDLEILNISENNLSGSMISTLNLS--SVEHLYLQNNALGGSIP-NTFFRGSALETLDLRD  280 (580)
Q Consensus       214 ----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~  280 (580)
                                ...|..+++.....-..+.+.++..+....+.+.  .+..=..+.+...++.| ..|..+++|++|++++
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence                      1223334444445555566666665555544222  33222233343444444 4688999999999999


Q ss_pred             CcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCC
Q 036717          281 NNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA  360 (580)
Q Consensus       281 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~  360 (580)
                      |+++++-+.+|.+...++.|.|..|++...-...|.++..|+.|++.+|+|+...|..|....+       +..+.+-.+
T Consensus       284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~-------l~~l~l~~N  356 (498)
T KOG4237|consen  284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS-------LSTLNLLSN  356 (498)
T ss_pred             CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce-------eeeeehccC
Confidence            9999999999999999999999999999777788999999999999999999888877765432       222222222


Q ss_pred             CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce---eeCCcccc------
Q 036717          361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT---GNIPSEIG------  431 (580)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~------  431 (580)
                      .+--                ...+.|+...++..-...+    -+-.....++.++++...+.   ...|++.+      
T Consensus       357 p~~C----------------nC~l~wl~~Wlr~~~~~~~----~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~  416 (498)
T KOG4237|consen  357 PFNC----------------NCRLAWLGEWLRKKSVVGN----PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSP  416 (498)
T ss_pred             cccC----------------ccchHHHHHHHhhCCCCCC----CCCCCCchhccccchhccccccccCCccccCCCCCCC
Confidence            1110                0112222221111100000    00011234555555554433   12233221      


Q ss_pred             ---cccCCCe-EecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccc
Q 036717          432 ---DLQNIHG-LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSG  496 (580)
Q Consensus       432 ---~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  496 (580)
                         .++-+.+ .--|+..++ .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+++|+++-
T Consensus       417 cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~  478 (498)
T KOG4237|consen  417 CPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS  478 (498)
T ss_pred             CCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence               2333433 334444444 6666554  35678999999999 67776  56788 99999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=4.6e-22  Score=210.29  Aligned_cols=194  Identities=27%  Similarity=0.330  Sum_probs=94.8

Q ss_pred             CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEc
Q 036717          104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI  183 (580)
Q Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  183 (580)
                      .-..|+++.+.++ .+|..+.   ++|+.|++++|+++. +|.   .+++|++|++++|+++. +|..   .++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence            3455666666665 5555432   356666666666653 222   23556666666666652 3321   245566666


Q ss_pred             ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccC
Q 036717          184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI  263 (580)
Q Consensus       184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  263 (580)
                      ++|.+. .+|..+   ++|+.|++++|+++ .+|.   ..++|+.|++++|.+++.+.   ...+|+.|++++|.+++ +
T Consensus       270 s~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        270 FSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             cCCchh-hhhhch---hhcCEEECcCCccc-cccc---cccccceeECCCCccccCCC---CcccccccccccCcccc-c
Confidence            666555 233221   34555666666555 2332   12455566666665554332   12345555555555542 3


Q ss_pred             ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeec
Q 036717          264 PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY  332 (580)
Q Consensus       264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  332 (580)
                      |..   ..+|+.|++++|+++ .+|..   ..+|+.|++++|.+++ +|..   ..+|+.|++++|.++
T Consensus       338 P~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        338 PTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT  395 (788)
T ss_pred             ccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence            321   134555555555555 23321   1345555555555542 3322   124555555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=9.2e-22  Score=208.01  Aligned_cols=265  Identities=24%  Similarity=0.300  Sum_probs=157.6

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEc
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNI   86 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l   86 (580)
                      ..-..|+++++.++ .+|..+.   ++|+.|++++|+++.+  +..+++|++|++++|+++ .+|.    ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L--P~lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL--PALPPELRTLEVSGNQLT-SLPV----LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC--CCCCCCCcEEEecCCccC-cccC----cccccceeec
Confidence            34567888888887 7777553   4688888888888864  345677888888888877 5664    2457778888


Q ss_pred             ccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccc
Q 036717           87 SKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG  166 (580)
Q Consensus        87 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (580)
                      ++|.++ .+|..   .++|+.|++++|+++ .+|.    ..++|+.|++++|.+++ +|..   ..+|+.|++++|.+++
T Consensus       270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             cCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence            888776 34432   256777788888776 5554    23567777777777764 2321   2356667777777763


Q ss_pred             cccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCC
Q 036717          167 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL  246 (580)
Q Consensus       167 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  246 (580)
                       +|..   ..+|+.|++++|++++ +|..   .++|+.|++++|.+.. +|..   ..+|+.|++++|.+++.+..   .
T Consensus       337 -LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l---~  401 (788)
T PRK15387        337 -LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL---P  401 (788)
T ss_pred             -cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc---c
Confidence             3431   2456777777777663 3432   2356666666666652 3432   23456666666665543321   2


Q ss_pred             CCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccc
Q 036717          247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQL  315 (580)
Q Consensus       247 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  315 (580)
                      ++|+.|++++|.++. +|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus       402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            345555555555552 3322   124455555555554 445555555555555555555554444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=2.2e-20  Score=198.96  Aligned_cols=246  Identities=22%  Similarity=0.335  Sum_probs=121.0

Q ss_pred             CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717            8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS   87 (580)
Q Consensus         8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~   87 (580)
                      +.++|+++++.++ .+|..+   .+.|+.|+|++|+++.++ .....+|++|++++|.++ .+|..+.   +.|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLT-SIPATLP---DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCccc-cCChhhh---ccccEEECc
Confidence            4456666666666 555433   235666666666666542 123345666666666665 4555432   356666666


Q ss_pred             cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc
Q 036717           88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK  167 (580)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (580)
                      +|.++ .+|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|+++. +|..+.  ++|+.|++++|.++. 
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence            66665 3444443  35666666666655 455432   1356666666665553 232221  345555555555552 


Q ss_pred             ccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCC
Q 036717          168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS  247 (580)
Q Consensus       168 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  247 (580)
                      +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++..+...  ..
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l--~~  388 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENL--PA  388 (754)
T ss_pred             CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhH--HH
Confidence            33322  2455555555555552 343332  45555555555554 2333332  34555555555554433221  12


Q ss_pred             CCcEEEeeCCcCcccCChhc----cCCCCccEEeCCCCcCc
Q 036717          248 SVEHLYLQNNALGGSIPNTF----FRGSALETLDLRDNNFS  284 (580)
Q Consensus       248 ~L~~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~n~l~  284 (580)
                      .|+.|++++|++. .+|..+    ..++.+..+++.+|.++
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            3445555555544 222221    22244445555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=8.4e-20  Score=194.55  Aligned_cols=139  Identities=19%  Similarity=0.311  Sum_probs=63.9

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      +...|+++++.++ .+|..+   .++|+.|++++|+++ .+|..+.  ++|++|++++|.++ .+|..+.   ++|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence            3455555555555 455433   234555555555555 3343332  35555555555555 4444321   2455555


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  213 (580)
                      +++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|.++. +|..+.  ++|+.|++++|.++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            5555554 2333322  24555555555554 2333331  345555555555442 222221  23444445554444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=4.1e-20  Score=183.44  Aligned_cols=204  Identities=25%  Similarity=0.285  Sum_probs=92.0

Q ss_pred             CCCCcEEEcccccCCCcCCccccCCC---CCCEEeccCccccc----cccccccCC-CCCCEEEcccCCCCCC----Cch
Q 036717          127 CFSLIWLDLSNNNFDGQIFPNYMNLT---QLQLLYLDNNHFSG----KIKDGLLRS-TELMVLDISNNRLSGH----IPS  194 (580)
Q Consensus       127 l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~  194 (580)
                      +++|++|++++|.+....+..+..+.   +|++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            44444444444444332222222222   25555555554442    111222333 4555555555555421    122


Q ss_pred             hhhcCCCCCEEEcccCcCCCc----CchhccCCCCCcEEEccCCcCccccCCc----c-CCCCCcEEEeeCCcCcccCCh
Q 036717          195 WMGNFSYLQILSMSKNLLEGN----IPVQFNDLLDLEILNISENNLSGSMIST----L-NLSSVEHLYLQNNALGGSIPN  265 (580)
Q Consensus       195 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~  265 (580)
                      .+..+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+.....    + .+++|++|++++|.+++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            334444555555555555421    1222333445555555555554322111    1 345556666665555532221


Q ss_pred             hcc-----CCCCccEEeCCCCcCcc----cCchhhccCcCcceeeccccccccc----CcccccCC-CCCCEEEeeCCe
Q 036717          266 TFF-----RGSALETLDLRDNNFSG----RIPHQINEHSNLRALLLRANYLQGP----IPHQLCRL-RKLGIMDLSHNR  330 (580)
Q Consensus       266 ~~~-----~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~  330 (580)
                      .+.     ..+.|+.|++++|.+++    .+...+..+++|+.+++++|.++..    ....+... +.++.+++.+|+
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            111     12466666666666641    1223344455666666666666633    22233333 466666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=4.1e-20  Score=183.39  Aligned_cols=280  Identities=24%  Similarity=0.276  Sum_probs=147.5

Q ss_pred             EEEcccccCCC-cCCccccCCCCCCEEeccCcccccc----ccccccCCCCCCEEEcccCCCCC------CCchhhhcCC
Q 036717          132 WLDLSNNNFDG-QIFPNYMNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSG------HIPSWMGNFS  200 (580)
Q Consensus       132 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~l~  200 (580)
                      .|+|..+.+++ .....+..+++|+.|+++++.+++.    ++..+...+.+++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            45666666653 2233445566677777777776432    33344555667777777666542      1123344455


Q ss_pred             CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcc----cCChhccCC-CCccE
Q 036717          201 YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGG----SIPNTFFRG-SALET  275 (580)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~-~~L~~  275 (580)
                      +|+.|++++|.+.+..+..+..+..                   . ++|++|++++|.+++    .+...+..+ ++|+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~  141 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK  141 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence            5666666555554333333332222                   1 234555555544442    112223333 55666


Q ss_pred             EeCCCCcCccc----CchhhccCcCcceeeccccccccc----CcccccCCCCCCEEEeeCCeecCccChhhhhhccccc
Q 036717          276 LDLRDNNFSGR----IPHQINEHSNLRALLLRANYLQGP----IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV  347 (580)
Q Consensus       276 L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~  347 (580)
                      |++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+....    
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~----  217 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL----  217 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh----
Confidence            66666665522    223344455666666666665532    222334445666677766666532222111100    


Q ss_pred             CCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCC
Q 036717          348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP  427 (580)
Q Consensus       348 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  427 (580)
                                                                                 ..+++|+.|++++|.+++...
T Consensus       218 -----------------------------------------------------------~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         218 -----------------------------------------------------------ASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             -----------------------------------------------------------cccCCCCEEecCCCcCchHHH
Confidence                                                                       014566777777776664322


Q ss_pred             cccc-----cccCCCeEecccCcce----ecccccccCcccCCEEECCCCccccc----CchhhcCC-CCCCEEeccCCc
Q 036717          428 SEIG-----DLQNIHGLNLSYNFLS----GSIPESFSNLKMIESLDLSHNKLNGQ----IPPQLTEL-HSLSKFDVSYNN  493 (580)
Q Consensus       428 ~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~  493 (580)
                      ..+.     ..+.|+.|++++|.++    ..+...+..+++|+++++++|.++..    ....+... +.|+.+++.+|+
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            2222     1367777777777775    22344555667788888888887744    44444445 577777777776


Q ss_pred             c
Q 036717          494 L  494 (580)
Q Consensus       494 l  494 (580)
                      +
T Consensus       319 ~  319 (319)
T cd00116         319 F  319 (319)
T ss_pred             C
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=4.4e-19  Score=146.85  Aligned_cols=184  Identities=28%  Similarity=0.476  Sum_probs=148.2

Q ss_pred             ccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCC
Q 036717          243 TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLG  322 (580)
Q Consensus       243 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  322 (580)
                      .+.+.+++.|.+++|+++ .+|..+..+.+|+.|++++|+++ ..|..+..++.|+.|+++-|.+. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            346677788888888888 66667888888888888888887 67888888888899888888887 7888899999999


Q ss_pred             EEEeeCCeecC-ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeecccc
Q 036717          323 IMDLSHNRLYG-SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRY  401 (580)
Q Consensus       323 ~L~l~~n~l~~-~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (580)
                      .||+++|++.. .+|..|..                                                            
T Consensus       106 vldltynnl~e~~lpgnff~------------------------------------------------------------  125 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFY------------------------------------------------------------  125 (264)
T ss_pred             hhhccccccccccCCcchhH------------------------------------------------------------
Confidence            99999988853 23332221                                                            


Q ss_pred             ceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCC
Q 036717          402 ESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL  481 (580)
Q Consensus       402 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  481 (580)
                             +..|+.|+|+.|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+|+++ .+|..++++
T Consensus       126 -------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  126 -------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             -------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence                   567778899999998 88888999999999999999988 78999999999999999999998 677777665


Q ss_pred             C---CCCEEeccCCcccccCC
Q 036717          482 H---SLSKFDVSYNNLSGPIP  499 (580)
Q Consensus       482 ~---~L~~L~Ls~N~l~~~~p  499 (580)
                      .   +=+.+.+.+|++..+|.
T Consensus       196 ~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  196 DLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             hhhhhHHHHhhhhCCCCChHH
Confidence            3   33456677788776654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=5.3e-18  Score=140.50  Aligned_cols=179  Identities=26%  Similarity=0.475  Sum_probs=133.4

Q ss_pred             ccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCc
Q 036717          148 YMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLE  227 (580)
Q Consensus       148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  227 (580)
                      +..+.+++.|.+++|+++ ..|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++.|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            345667777788888887 56667788888888888888887 66777888888888888888886 7788888888888


Q ss_pred             EEEccCCcCccc--cCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccc
Q 036717          228 ILNISENNLSGS--MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN  305 (580)
Q Consensus       228 ~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  305 (580)
                      .||+.+|++...  +-.++.+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+- ..|..++.++.|++|.+.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            888888887642  233447778888888888887 77778888888888888888876 67888888888888888888


Q ss_pred             cccccCcccccCCC---CCCEEEeeCCeec
Q 036717          306 YLQGPIPHQLCRLR---KLGIMDLSHNRLY  332 (580)
Q Consensus       306 ~l~~~~~~~~~~l~---~L~~L~l~~n~l~  332 (580)
                      .++ .+|..+..+.   +=+.+.+.+|++.
T Consensus       184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  184 RLT-VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             eee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            887 4555444332   2233444555543

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=1.1e-15  Score=162.75  Aligned_cols=118  Identities=36%  Similarity=0.609  Sum_probs=106.3

Q ss_pred             cccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEecc
Q 036717          411 HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS  490 (580)
Q Consensus       411 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  490 (580)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCc--ccCCcCccccCCCCCCCCCCCCCCCC
Q 036717          491 YNNLSGPIPDKE--QFSTFDESSYRGNLHLCGPPINKSCT  528 (580)
Q Consensus       491 ~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~~~~C~  528 (580)
                      +|+++|.+|...  .+.......+.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  12233456789999999987666774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=9.6e-15  Score=143.12  Aligned_cols=175  Identities=31%  Similarity=0.486  Sum_probs=131.9

Q ss_pred             CCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEE
Q 036717          246 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMD  325 (580)
Q Consensus       246 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  325 (580)
                      +.--...+++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|+.++++.|+++ ..|..+|.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344456677777776 67777777777888888888776 67778888888888888888887 6677777665 77888


Q ss_pred             eeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceec
Q 036717          326 LSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYK  405 (580)
Q Consensus       326 l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (580)
                      +++|+++ .+|..++.                                                                
T Consensus       150 ~sNNkl~-~lp~~ig~----------------------------------------------------------------  164 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGL----------------------------------------------------------------  164 (722)
T ss_pred             EecCccc-cCCccccc----------------------------------------------------------------
Confidence            8888875 56654431                                                                


Q ss_pred             ccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCC
Q 036717          406 GVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS  485 (580)
Q Consensus       406 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  485 (580)
                         .+.|..||.+.|.+. .+|..++.+.+|+.|+++.|++. ..|+.+..|+ |..||+|+|+++ .+|-.|..|+.|+
T Consensus       165 ---~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  165 ---LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQ  237 (722)
T ss_pred             ---chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhe
Confidence               566777888888887 67777888888888888888887 5666666554 778888888887 6788888888888


Q ss_pred             EEeccCCcccc
Q 036717          486 KFDVSYNNLSG  496 (580)
Q Consensus       486 ~L~Ls~N~l~~  496 (580)
                      +|-|.+|+|+.
T Consensus       238 ~l~LenNPLqS  248 (722)
T KOG0532|consen  238 VLQLENNPLQS  248 (722)
T ss_pred             eeeeccCCCCC
Confidence            88888888874

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.29  E-value=5.2e-12  Score=128.95  Aligned_cols=82  Identities=40%  Similarity=0.623  Sum_probs=38.3

Q ss_pred             ccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccC
Q 036717          412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY  491 (580)
Q Consensus       412 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  491 (580)
                      |++|++++|.+. ..+..+..+..+..+.+.+|++. ..+..++.+++++.|++++|+++.. +. +..+.+++.|++++
T Consensus       211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccC
Confidence            444444444322 23344444455555555555544 2244444555555555555555422 22 44455555555555


Q ss_pred             Cccccc
Q 036717          492 NNLSGP  497 (580)
Q Consensus       492 N~l~~~  497 (580)
                      |.++..
T Consensus       287 n~~~~~  292 (394)
T COG4886         287 NSLSNA  292 (394)
T ss_pred             cccccc
Confidence            555433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=6e-12  Score=128.52  Aligned_cols=199  Identities=29%  Similarity=0.412  Sum_probs=128.3

Q ss_pred             EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCC-CCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQ-GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      .+++..|.+...+....  .++.++.|++.+|.++ .++.....++ +|+.|++++|.+. .++.. ...+++|+.|+++
T Consensus        97 ~l~~~~~~~~~~~~~~~--~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRSNISELL--ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccccCchhhh--cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhh-hhccccccccccC
Confidence            46666666532222221  3466777777777777 4555556563 7777777777776 55433 3567777777777


Q ss_pred             cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcC
Q 036717          137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNI  216 (580)
Q Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  216 (580)
                      +|++.. ++......++|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..
T Consensus       172 ~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~  247 (394)
T COG4886         172 FNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL  247 (394)
T ss_pred             Cchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence            777763 3333336677777777777776 44544444555777777777533 34555677777777777777765 33


Q ss_pred             chhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChh
Q 036717          217 PVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNT  266 (580)
Q Consensus       217 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  266 (580)
                      +..+..+++++.|++++|.++.... .....+++.|+++++.+....+..
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhh
Confidence            5666777778888888887776655 446677888888887777554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=7.8e-12  Score=109.10  Aligned_cols=126  Identities=24%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             CCCCCcEEEccCCcccCCCCCC-CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhh-hcCCCCCE
Q 036717           30 NNTKLEVLYLINNSFSGFQLTG-AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRF  107 (580)
Q Consensus        30 ~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~  107 (580)
                      +..++++|+|++|.|+.++... .+.+|+.|++++|.++ .++. + ..+++|+.|++++|+|+.. .+.+ ..+++|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            4445555555555555543332 3455555566655555 3332 1 2355566666666666532 2223 34556666


Q ss_pred             EEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCC---ccccCCCCCCEEec
Q 036717          108 LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF---PNYMNLTQLQLLYL  159 (580)
Q Consensus       108 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l  159 (580)
                      |++++|++...-.-..+..+++|+.|++.+|++.....   ..+..+|+|+.||-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            66666655421111223455666666666665542210   12345666666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=9.6e-13  Score=125.44  Aligned_cols=210  Identities=23%  Similarity=0.183  Sum_probs=124.9

Q ss_pred             hCCCCCcEEEccCCcccCCCC---CCCCCCccEEEccCCCCCccCC-hhHhhcCCCCcEEEcccCcCccccch-hhhcCC
Q 036717           29 ENNTKLEVLYLINNSFSGFQL---TGAQHGLLSLDISKNSFTGELP-QNMGIVLQKLVYMNISKNSFEGNIPS-SIAKMQ  103 (580)
Q Consensus        29 ~~l~~L~~L~L~~n~l~~~~~---~~~~~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~  103 (580)
                      +++.+|+++.|.++.+.....   ...+++++.|||++|-+..--+ ..+...+|+|+.|+++.|++...... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            367778888888887766542   2377788888888886652211 23445688888888888877632211 112467


Q ss_pred             CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccc-cccccCCCCCCEEE
Q 036717          104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI-KDGLLRSTELMVLD  182 (580)
Q Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~  182 (580)
                      +|+.|.++.|.++-.--..+...+|+|+.|+|..|...........-+..|++|+|++|.+.... -.....++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            78888888887764333344556788888888877532222333445667788888877765322 13346677777777


Q ss_pred             cccCCCCCC-Cchh-----hhcCCCCCEEEcccCcCCCc-CchhccCCCCCcEEEccCCcCcc
Q 036717          183 ISNNRLSGH-IPSW-----MGNFSYLQILSMSKNLLEGN-IPVQFNDLLDLEILNISENNLSG  238 (580)
Q Consensus       183 L~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~  238 (580)
                      ++.+.+... .|+.     ...+++|+.|++..|++... .-..+..+++|+.|.+..|.+..
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            777776532 1222     23355666666666665321 11223344555555555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.26  E-value=5.4e-13  Score=123.72  Aligned_cols=242  Identities=24%  Similarity=0.320  Sum_probs=126.5

Q ss_pred             CCCCcEEEcccCcCccc----cchhhhcCCCCCEEEcccCcCcc----ccchHH------HhCCCCCcEEEcccccCCCc
Q 036717           78 LQKLVYMNISKNSFEGN----IPSSIAKMQGLRFLDVSTNNFAG----ELSQSL------VTNCFSLIWLDLSNNNFDGQ  143 (580)
Q Consensus        78 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~------~~~l~~L~~L~L~~n~l~~~  143 (580)
                      ...++.+++++|.+...    +...+++.+.|+..++++- ++|    ++|..+      +..+++|++|+||+|.+...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            34555556665555421    2234445566666666543 222    233221      23445666666666666533


Q ss_pred             CCccc----cCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc----
Q 036717          144 IFPNY----MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN----  215 (580)
Q Consensus       144 ~~~~~----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----  215 (580)
                      .++.|    ..+..|++|+|.+|.+...-...++.  .|.+|.  .+       ...+.-+.|+++....|++...    
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~  176 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATA  176 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccHHH
Confidence            33322    34556666666666554211111100  000000  00       0012234566666666655422    


Q ss_pred             CchhccCCCCCcEEEccCCcCccccCCc-----cCCCCCcEEEeeCCcCccc----CChhccCCCCccEEeCCCCcCccc
Q 036717          216 IPVQFNDLLDLEILNISENNLSGSMIST-----LNLSSVEHLYLQNNALGGS----IPNTFFRGSALETLDLRDNNFSGR  286 (580)
Q Consensus       216 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~  286 (580)
                      +...|...+.|+.+.++.|.|.......     ..+++|+.|++++|.++..    +...+..+++|+++++++|.+...
T Consensus       177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~  256 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE  256 (382)
T ss_pred             HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence            2234555566666666666654333211     1667777777777766532    234555667788888888877644


Q ss_pred             Cchhh-----ccCcCcceeecccccccccC----cccccCCCCCCEEEeeCCee
Q 036717          287 IPHQI-----NEHSNLRALLLRANYLQGPI----PHQLCRLRKLGIMDLSHNRL  331 (580)
Q Consensus       287 ~~~~~-----~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l  331 (580)
                      ....+     ...|+|+++.+.+|.|+...    ...+...+.|..|++++|++
T Consensus       257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            33332     33678888888888777322    23344567888888888888

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=3.8e-13  Score=132.11  Aligned_cols=211  Identities=25%  Similarity=0.353  Sum_probs=168.1

Q ss_pred             EEEccCCcccCCCCCC---CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEccc
Q 036717           36 VLYLINNSFSGFQLTG---AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVST  112 (580)
Q Consensus        36 ~L~L~~n~l~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  112 (580)
                      .|.|++-++..++...   .+.--...|++.|++. ++|..+. .+-.|+.+.+..|.+. .+|..++++..|+++||+.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence            4556666666554443   2333456799999998 8988775 5778899999999998 7899999999999999999


Q ss_pred             CcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCC
Q 036717          113 NNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI  192 (580)
Q Consensus       113 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  192 (580)
                      |++. ..|..++ . --|+.|.+++|+++ .+|+.++.++.|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+
T Consensus       131 NqlS-~lp~~lC-~-lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l  204 (722)
T KOG0532|consen  131 NQLS-HLPDGLC-D-LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL  204 (722)
T ss_pred             chhh-cCChhhh-c-CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence            9998 7887663 3 35899999999998 67888888899999999999998 67888899999999999999998 55


Q ss_pred             chhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc---CCCCCcEEEeeCC
Q 036717          193 PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL---NLSSVEHLYLQNN  257 (580)
Q Consensus       193 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~l~~n  257 (580)
                      |..+..+ .|..||++.|++. .+|..|..|..|++|.|.+|.+...+....   ...-.++|+..-|
T Consensus       205 p~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  205 PEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            6667754 6899999999998 889999999999999999999886544332   2233456666666

>PLN03150 hypothetical protein; Provisional

Probab=99.22  E-value=1.8e-11  Score=130.66  Aligned_cols=92  Identities=36%  Similarity=0.625  Sum_probs=85.7

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCC-CCCCEE
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSKF  487 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L  487 (580)
                      +++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ .++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            6789999999999999999999999999999999999999999999999999999999999999999998875 467899


Q ss_pred             eccCCcccccCCC
Q 036717          488 DVSYNNLSGPIPD  500 (580)
Q Consensus       488 ~Ls~N~l~~~~p~  500 (580)
                      ++++|+..|.+|.
T Consensus       521 ~~~~N~~lc~~p~  533 (623)
T PLN03150        521 NFTDNAGLCGIPG  533 (623)
T ss_pred             EecCCccccCCCC
Confidence            9999998886653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=1.1e-11  Score=108.18  Aligned_cols=128  Identities=27%  Similarity=0.325  Sum_probs=36.4

Q ss_pred             CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717           52 AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI  131 (580)
Q Consensus        52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  131 (580)
                      ++..++.|+|++|.|+ .+. .+...+.+|+.|++++|.|+..  +.+..+++|+.|++++|.++ .+...+...+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            4445566666666655 332 2322355666666666666532  24555666666666666665 44433333456666


Q ss_pred             EEEcccccCCCcC-CccccCCCCCCEEeccCccccccc---cccccCCCCCCEEEcc
Q 036717          132 WLDLSNNNFDGQI-FPNYMNLTQLQLLYLDNNHFSGKI---KDGLLRSTELMVLDIS  184 (580)
Q Consensus       132 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~L~  184 (580)
                      +|++++|+|.... ...+..+++|+.|++.+|.+....   ...+..+|+|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            6666666664321 134455666666666666655321   1123445666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.17  E-value=6.3e-12  Score=114.04  Aligned_cols=134  Identities=27%  Similarity=0.296  Sum_probs=95.4

Q ss_pred             ccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhc
Q 036717          292 NEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYY  371 (580)
Q Consensus       292 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  371 (580)
                      .....|+++++++|.|+ .+.+...-.++++.|++++|.+..     +.++                             
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nL-----------------------------  325 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNL-----------------------------  325 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhh-----------------------------
Confidence            33456777888888777 566666667788888888887751     1110                             


Q ss_pred             ccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccc
Q 036717          372 NSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIP  451 (580)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  451 (580)
                                                         ..+++|+.||||+|.++ .+.++-..+.+.+.|.|+.|.+..  -
T Consensus       326 -----------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--L  367 (490)
T KOG1259|consen  326 -----------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--L  367 (490)
T ss_pred             -----------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--h
Confidence                                               01677888888888887 555555677788888888888762  3


Q ss_pred             ccccCcccCCEEECCCCccccc-CchhhcCCCCCCEEeccCCcccccC
Q 036717          452 ESFSNLKMIESLDLSHNKLNGQ-IPPQLTELHSLSKFDVSYNNLSGPI  498 (580)
Q Consensus       452 ~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~  498 (580)
                      ..++.+-+|..||+++|+|... -...++++|.|+.+.|.+|++.+.+
T Consensus       368 SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  368 SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            4567778888888888888643 2346788888888889999888644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=4.7e-12  Score=120.82  Aligned_cols=161  Identities=18%  Similarity=0.179  Sum_probs=74.9

Q ss_pred             CCCCccEEEccCCCCCccCCh-hHhhcCCCCcEEEcccCcCccc--cchhhhcCCCCCEEEcccCcCccccchHHHhCCC
Q 036717           52 AQHGLLSLDISKNSFTGELPQ-NMGIVLQKLVYMNISKNSFEGN--IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCF  128 (580)
Q Consensus        52 ~~~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  128 (580)
                      ++.+|+.+.|.++.+. ..+. .....|++++.|||++|-+...  +..-...+|+|+.|+++.|.+........-..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4556666666666654 2221 2334566666666666655422  1223345666666666666554322222222345


Q ss_pred             CCcEEEcccccCCCcCC-ccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCC-chhhhcCCCCCEEE
Q 036717          129 SLIWLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI-PSWMGNFSYLQILS  206 (580)
Q Consensus       129 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  206 (580)
                      +|+.|.++.|.++.... .....+|+|+.|++.+|............+..|+.|||++|.+.... -...+.++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            55555555555542111 12234455555555555322122222233444555555555544211 01233444444455


Q ss_pred             cccCcCC
Q 036717          207 MSKNLLE  213 (580)
Q Consensus       207 l~~n~l~  213 (580)
                      ++.+.+.
T Consensus       278 ls~tgi~  284 (505)
T KOG3207|consen  278 LSSTGIA  284 (505)
T ss_pred             ccccCcc
Confidence            5444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.16  E-value=7.7e-12  Score=116.17  Aligned_cols=183  Identities=19%  Similarity=0.234  Sum_probs=108.1

Q ss_pred             cCCCCcEEEcccCcCccccch----hhhcCCCCCEEEcccCcCccccchHH-------------HhCCCCCcEEEccccc
Q 036717           77 VLQKLVYMNISKNSFEGNIPS----SIAKMQGLRFLDVSTNNFAGELSQSL-------------VTNCFSLIWLDLSNNN  139 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~~l~~L~~L~L~~n~  139 (580)
                      .+++|++|+||+|.+....+.    -+..+..|++|.|.+|.+. ......             ...-+.|+.+..++|+
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            345666666666655433332    2334566666666666553 111111             1233567777777777


Q ss_pred             CCCcC----CccccCCCCCCEEeccCcccccc----ccccccCCCCCCEEEcccCCCCCCC----chhhhcCCCCCEEEc
Q 036717          140 FDGQI----FPNYMNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSGHI----PSWMGNFSYLQILSM  207 (580)
Q Consensus       140 l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l  207 (580)
                      +....    ...|...+.|+.+.++.|.|...    ....+..+++|+.|||..|.++...    ...++.+++|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            65422    22345567777777777766421    2345667777888888777776432    334556677888888


Q ss_pred             ccCcCCCcCchhcc-----CCCCCcEEEccCCcCccccCCcc-----CCCCCcEEEeeCCcCc
Q 036717          208 SKNLLEGNIPVQFN-----DLLDLEILNISENNLSGSMISTL-----NLSSVEHLYLQNNALG  260 (580)
Q Consensus       208 ~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~  260 (580)
                      ++|.+......+|.     ..+.|+++.+.+|.++.......     ..+.|+.|++++|.+.
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            88877654433332     35778888888887764322211     4678888888888883

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.4e-11  Score=111.83  Aligned_cols=132  Identities=28%  Similarity=0.353  Sum_probs=104.3

Q ss_pred             CCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccC
Q 036717          269 RGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVG  348 (580)
Q Consensus       269 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~  348 (580)
                      ....|+++|+++|.|+ .+.++..-.|.++.|+++.|.+...  ..+..+++|+.||+++|.++. +-.+-.        
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~--------  349 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHL--------  349 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHh--------
Confidence            3467899999999998 6777888889999999999999743  338889999999999999862 111100        


Q ss_pred             CCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCc
Q 036717          349 NESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPS  428 (580)
Q Consensus       349 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  428 (580)
                                                                                 .+-+.+.|.|+.|.+..  -.
T Consensus       350 -----------------------------------------------------------KLGNIKtL~La~N~iE~--LS  368 (490)
T KOG1259|consen  350 -----------------------------------------------------------KLGNIKTLKLAQNKIET--LS  368 (490)
T ss_pred             -----------------------------------------------------------hhcCEeeeehhhhhHhh--hh
Confidence                                                                       05678889999999862  23


Q ss_pred             ccccccCCCeEecccCcceecc-cccccCcccCCEEECCCCccccc
Q 036717          429 EIGDLQNIHGLNLSYNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ  473 (580)
Q Consensus       429 ~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~  473 (580)
                      .++.+-+|..||+++|+|.... ...+++++.|+++.|.+|.+.+.
T Consensus       369 GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  369 GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            4778889999999999998532 36799999999999999999854

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=1.7e-10  Score=125.81  Aligned_cols=272  Identities=22%  Similarity=0.228  Sum_probs=162.1

Q ss_pred             CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCC--CCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCE
Q 036717           30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNS--FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRF  107 (580)
Q Consensus        30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  107 (580)
                      .....+.+.+-+|.+..+.....++.|++|-+..|.  +. .++..+|..++.|++||+++|.--+.+|..++.+-+|++
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            456778888888888776555567789898888886  44 777887888999999999987666688999999999999


Q ss_pred             EEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccc--ccccccccCCCCCCEEEccc
Q 036717          108 LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS--GKIKDGLLRSTELMVLDISN  185 (580)
Q Consensus       108 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~  185 (580)
                      |++++..+. .+|..+ .++..|.+|++..+.-....+.....+++|++|.+......  ...-..+..+.+|+.+....
T Consensus       600 L~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             ccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            999999888 888876 78899999999887765455566666889999888765422  11222334444555554433


Q ss_pred             CCCCCCCchhhhcCCCCC----EEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc------C-CCCCcEEEe
Q 036717          186 NRLSGHIPSWMGNFSYLQ----ILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL------N-LSSVEHLYL  254 (580)
Q Consensus       186 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~-~~~L~~L~l  254 (580)
                      ...  .+-..+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+........      . ++++..+..
T Consensus       678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~  754 (889)
T KOG4658|consen  678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI  754 (889)
T ss_pred             chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence            222  0111122222222    2222222222 334455666777777777766653322111      1 223333333


Q ss_pred             eCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccc
Q 036717          255 QNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ  308 (580)
Q Consensus       255 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  308 (580)
                      .++... ..+.+....++|+.|.+..+.....+......+..+..+.+..+.+.
T Consensus       755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            333222 12222333456666666666554444444444444444444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.06  E-value=1.3e-10  Score=83.35  Aligned_cols=60  Identities=45%  Similarity=0.625  Sum_probs=35.2

Q ss_pred             CCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcc
Q 036717          435 NIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNL  494 (580)
Q Consensus       435 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  494 (580)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455566666666555555556666666666666666555555566666666666666553

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.02  E-value=3.1e-10  Score=81.36  Aligned_cols=61  Identities=43%  Similarity=0.609  Sum_probs=57.7

Q ss_pred             ccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcc
Q 036717          410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL  470 (580)
Q Consensus       410 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  470 (580)
                      ++|+.|++++|+++...++.|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988889999999999999999999999999999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.94  E-value=7.9e-10  Score=120.67  Aligned_cols=59  Identities=29%  Similarity=0.349  Sum_probs=40.5

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceec-ccccccCcccCCEEECCC
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS-IPESFSNLKMIESLDLSH  467 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~  467 (580)
                      .++|+.|.+..+.....+......+..++.+-+..+.+.+. .-...++++++..+.++.
T Consensus       769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~  828 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF  828 (889)
T ss_pred             cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence            67888899988887767666677777777777777777755 344455555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=1.3e-10  Score=118.74  Aligned_cols=221  Identities=24%  Similarity=0.243  Sum_probs=106.4

Q ss_pred             CCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEE
Q 036717           78 LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLL  157 (580)
Q Consensus        78 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  157 (580)
                      +.+|+.|++.+|+|..+ ...+..+++|++|++++|.|+ .+..  +..++.|+.|++++|.++.  ...+..++.|+.+
T Consensus        94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLL  167 (414)
T ss_pred             ccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchh--ccCCccchhhhcc
Confidence            45555555555555522 222445555555555555555 3332  2344445555666555542  2333445566666


Q ss_pred             eccCcccccccc-ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCC--CcEEEccCC
Q 036717          158 YLDNNHFSGKIK-DGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD--LEILNISEN  234 (580)
Q Consensus       158 ~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n  234 (580)
                      ++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.++..-  .+..+..  |+.+++++|
T Consensus       168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n  242 (414)
T KOG0531|consen  168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGN  242 (414)
T ss_pred             cCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccC
Confidence            666665553322 1 34455666666666655421  22333333444455555554211  1111222  556666666


Q ss_pred             cCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCccc---Cchh-hccCcCcceeeccccccccc
Q 036717          235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGR---IPHQ-INEHSNLRALLLRANYLQGP  310 (580)
Q Consensus       235 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~-~~~~~~L~~L~l~~n~l~~~  310 (580)
                      .+.......-.+..+..+++..|.+...  ..+...+.+..+....+.+...   .... ....+.++...+..|.+...
T Consensus       243 ~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  243 RISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             ccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            6554432222455666666666665422  1233334455555555554411   1111 33445666777777666544


Q ss_pred             C
Q 036717          311 I  311 (580)
Q Consensus       311 ~  311 (580)
                      .
T Consensus       321 ~  321 (414)
T KOG0531|consen  321 S  321 (414)
T ss_pred             c
Confidence            3

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=2e-10  Score=117.35  Aligned_cols=266  Identities=24%  Similarity=0.247  Sum_probs=160.7

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCC-CCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF-QLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN   85 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~   85 (580)
                      +..+.++...+.+. ..... ...+..++.++++.|.+..+ .....+.+|..|++.+|.+. .+...+ ..+++|++|+
T Consensus        49 ~~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~  124 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLD  124 (414)
T ss_pred             chhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccch-hhhhcchhee
Confidence            34455555555443 11111 13566677777777777762 22346677888888888776 443322 2577888888


Q ss_pred             cccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCC-ccccCCCCCCEEeccCccc
Q 036717           86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNNHF  164 (580)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l  164 (580)
                      +++|.|+..  ..+..++.|+.|++++|.+. .+..  +..+..|+.+++++|.+....+ . ...+.+++.+++.+|.+
T Consensus       125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  125 LSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             ccccccccc--cchhhccchhhheeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            888887754  34566777888888888777 4444  3447778888888887764433 2 46677788888888877


Q ss_pred             cccccccccCCCCCCEEEcccCCCCCCCchhhhcCC--CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCC
Q 036717          165 SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFS--YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIS  242 (580)
Q Consensus       165 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  242 (580)
                      ...  ..+..+..+..+++..|.+...-+  +..+.  +|+.+++++|.+. ..+..+..+..+..+++..|.+......
T Consensus       199 ~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~  273 (414)
T KOG0531|consen  199 REI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGL  273 (414)
T ss_pred             hcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccc
Confidence            532  233444555555777777663222  22222  3778888888776 3335566677778888887776643321


Q ss_pred             ccCCCCCcEEEeeCCcCccc---CChh-ccCCCCccEEeCCCCcCcccCc
Q 036717          243 TLNLSSVEHLYLQNNALGGS---IPNT-FFRGSALETLDLRDNNFSGRIP  288 (580)
Q Consensus       243 ~~~~~~L~~L~l~~n~l~~~---~~~~-~~~~~~L~~L~l~~n~l~~~~~  288 (580)
                      . ..+.+..+....+.+...   .... ....+.++...+..|.+....+
T Consensus       274 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  274 E-RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             c-ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            1 344555556666655421   1111 3445677888888887765443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=6.2e-10  Score=101.29  Aligned_cols=177  Identities=24%  Similarity=0.240  Sum_probs=98.5

Q ss_pred             CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCC-CCccCChhHhhcCCCCcEE
Q 036717            8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS-FTGELPQNMGIVLQKLVYM   84 (580)
Q Consensus         8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L   84 (580)
                      .|+.||||+..|+..-...+...|.+|+.|.|.++++.+.-..  +.-.+|+.|+++.+. ++.....-++.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4677777777776444445556777777777777777664111  244667777777764 4433334455667777777


Q ss_pred             EcccCcCccccch-hhhc-CCCCCEEEcccCcCc--cccchHHHhCCCCCcEEEccccc-CCCcCCccccCCCCCCEEec
Q 036717           85 NISKNSFEGNIPS-SIAK-MQGLRFLDVSTNNFA--GELSQSLVTNCFSLIWLDLSNNN-FDGQIFPNYMNLTQLQLLYL  159 (580)
Q Consensus        85 ~l~~n~l~~~~~~-~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l  159 (580)
                      ++++|.+....-. .++. -++|+.|+++++.-.  ..--..+...|++|.+|||++|. ++......|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            7777765532211 1111 245677777665211  11112234566777777776643 33333345556666666666


Q ss_pred             cCcccccccccc---ccCCCCCCEEEcccC
Q 036717          160 DNNHFSGKIKDG---LLRSTELMVLDISNN  186 (580)
Q Consensus       160 ~~n~l~~~~~~~---l~~l~~L~~L~L~~n  186 (580)
                      +.|..  ++|..   +...++|.+|+..++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66543  33332   234455666665554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=2.8e-09  Score=97.08  Aligned_cols=200  Identities=23%  Similarity=0.209  Sum_probs=120.9

Q ss_pred             CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCC----CCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717           10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTG----AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN   85 (580)
Q Consensus        10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~   85 (580)
                      +.+|+.+-.|.......+.  -.....+.+....+.......    +-..|++||||+..++-.--..+...|++|+.|.
T Consensus       139 ~~lDl~~r~i~p~~l~~l~--~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lS  216 (419)
T KOG2120|consen  139 QTLDLTGRNIHPDVLGRLL--SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLS  216 (419)
T ss_pred             eeeccCCCccChhHHHHHH--hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcc
Confidence            5677777776622111111  234455555544433321111    3346899999988877444455666788999999


Q ss_pred             cccCcCccccchhhhcCCCCCEEEcccCc-CccccchHHHhCCCCCcEEEcccccCCCcCCccc-c-CCCCCCEEeccCc
Q 036717           86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNN-FAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY-M-NLTQLQLLYLDNN  162 (580)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~-~l~~L~~L~l~~n  162 (580)
                      +.++++.+.+...++.-.+|+.|+++.+. ++......++.+|+.|..|++++|.+........ . --++|+.|+++++
T Consensus       217 lEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  217 LEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             ccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            99999998888889999999999998763 4433344557888899999999887764322211 1 1256777777765


Q ss_pred             ccc---ccccccccCCCCCCEEEcccCCC-CCCCchhhhcCCCCCEEEcccCc
Q 036717          163 HFS---GKIKDGLLRSTELMVLDISNNRL-SGHIPSWMGNFSYLQILSMSKNL  211 (580)
Q Consensus       163 ~l~---~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~  211 (580)
                      .-.   ..+..-...+++|.+|||+.|.. +......|-.++.|++|.++.|.
T Consensus       297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            311   11111224566777777766542 22222334456666666666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.59  E-value=8.3e-09  Score=92.83  Aligned_cols=240  Identities=22%  Similarity=0.258  Sum_probs=126.4

Q ss_pred             CCCCcEEEcccCcCccccchh----hhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCC
Q 036717           78 LQKLVYMNISKNSFEGNIPSS----IAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQ  153 (580)
Q Consensus        78 l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  153 (580)
                      +..+..++||+|.|......+    +++-.+|+..+++.- ++|..-..+..++.              ...+++.+||+
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~--------------~Ll~aLlkcp~   93 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLV--------------MLLKALLKCPR   93 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHH--------------HHHHHHhcCCc
Confidence            456666666666665333333    333455666666543 22222221111100              11233445555


Q ss_pred             CCEEeccCccccccccc----cccCCCCCCEEEcccCCCCCCCchhh-------------hcCCCCCEEEcccCcCCCcC
Q 036717          154 LQLLYLDNNHFSGKIKD----GLLRSTELMVLDISNNRLSGHIPSWM-------------GNFSYLQILSMSKNLLEGNI  216 (580)
Q Consensus       154 L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~  216 (580)
                      |+..++++|.+....|.    .+++.+.|.+|.+++|.+......-+             .+-|.|++.....|++..-.
T Consensus        94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238          94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence            55555555555433332    23455666666666666542211111             23456777777777765221


Q ss_pred             c----hhccCCCCCcEEEccCCcCccccCCc------cCCCCCcEEEeeCCcCcccC----ChhccCCCCccEEeCCCCc
Q 036717          217 P----VQFNDLLDLEILNISENNLSGSMIST------LNLSSVEHLYLQNNALGGSI----PNTFFRGSALETLDLRDNN  282 (580)
Q Consensus       217 ~----~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~  282 (580)
                      .    ..+..-.+|+++.+..|.|.......      +.+.+|+.|++++|.++-..    ...+...+.|+.|.+.+|-
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            1    12333357788888887775443222      26678888888888776332    2344555678888888887


Q ss_pred             CcccCchhh------ccCcCcceeecccccccccCcccc-------cCCCCCCEEEeeCCeec
Q 036717          283 FSGRIPHQI------NEHSNLRALLLRANYLQGPIPHQL-------CRLRKLGIMDLSHNRLY  332 (580)
Q Consensus       283 l~~~~~~~~------~~~~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~n~l~  332 (580)
                      ++......+      ...|+|..|-...|.+.+.+....       ..++-|..+.+.+|++.
T Consensus       254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            764433322      134677777777776654332211       23455566666667664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.50  E-value=7e-09  Score=83.52  Aligned_cols=90  Identities=22%  Similarity=0.354  Sum_probs=64.9

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD  488 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  488 (580)
                      ++.++.|+|++|+++ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|-.||..+|.+. .+|..+---+.....+
T Consensus        76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~  152 (177)
T KOG4579|consen   76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIK  152 (177)
T ss_pred             cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHH
Confidence            456777888888888 67777888888888888888888 67777777888888888888877 5555433333444456


Q ss_pred             ccCCcccccCCCC
Q 036717          489 VSYNNLSGPIPDK  501 (580)
Q Consensus       489 Ls~N~l~~~~p~~  501 (580)
                      +.++++.+.+|..
T Consensus       153 lgnepl~~~~~~k  165 (177)
T KOG4579|consen  153 LGNEPLGDETKKK  165 (177)
T ss_pred             hcCCcccccCccc
Confidence            6777777766644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.49  E-value=1.9e-09  Score=109.46  Aligned_cols=178  Identities=27%  Similarity=0.263  Sum_probs=82.8

Q ss_pred             chHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCC----------CccCChhHhhcCCCCcEEEcccCcCc
Q 036717           24 PTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSF----------TGELPQNMGIVLQKLVYMNISKNSFE   92 (580)
Q Consensus        24 ~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l----------~~~~~~~~~~~l~~L~~L~l~~n~l~   92 (580)
                      |-++| .+..|++|.|.++.+....-. .--..|+.|-.++. +          .|.+....  ....|...++++|.+.
T Consensus       102 pi~if-pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIF-PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP--VWNKLATASFSYNRLV  177 (1096)
T ss_pred             Cceec-cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch--hhhhHhhhhcchhhHH
Confidence            55666 788888888888877642100 01112222222111 0          01111111  0124455555555555


Q ss_pred             cccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccc
Q 036717           93 GNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL  172 (580)
Q Consensus        93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  172 (580)
                       ..-.++.-++.|+.|+|++|+++ .+.  .+..|++|++|||++|.+.....-...++. |+.|.+++|.++..  ..+
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi  250 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGI  250 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhH
Confidence             33445555555556666655555 222  234555556666665555422111122222 55566665555422  224


Q ss_pred             cCCCCCCEEEcccCCCCCCC-chhhhcCCCCCEEEcccCcC
Q 036717          173 LRSTELMVLDISNNRLSGHI-PSWMGNFSYLQILSMSKNLL  212 (580)
Q Consensus       173 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l  212 (580)
                      .++.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|.+
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            45555566666665544321 11233444555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=8.6e-08  Score=87.58  Aligned_cols=225  Identities=21%  Similarity=0.252  Sum_probs=113.6

Q ss_pred             CCcEEEccCCcCccccCCcc---CCCCCcEEEeeCCcCcc--cCChhccCCCCccEEeCCCCcCcccCchhhccCcCcce
Q 036717          225 DLEILNISENNLSGSMISTL---NLSSVEHLYLQNNALGG--SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA  299 (580)
Q Consensus       225 ~L~~L~l~~n~l~~~~~~~~---~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  299 (580)
                      .++.+.+.++.|........   ..+.++.++|.+|.|++  .+...+.+++.|++|+++.|++...+-..-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            33444444444443332221   45667777777777763  23344566777777777777776333221124457777


Q ss_pred             eecccccccc-cCcccccCCCCCCEEEeeCCeecCcc--ChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccc
Q 036717          300 LLLRANYLQG-PIPHQLCRLRKLGIMDLSHNRLYGSI--PACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQ  376 (580)
Q Consensus       300 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  376 (580)
                      |.|.+..+.- .....+..+|.++.+.++.|.+....  ..|...                            +.....+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----------------------------~s~~v~t  177 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED----------------------------WSTEVLT  177 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc----------------------------cchhhhh
Confidence            7777766541 22334556677777777777542100  001100                            0000011


Q ss_pred             cccccch-hhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCC-cccccccCCCeEecccCcceecc-ccc
Q 036717          377 LRLDESD-LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP-SEIGDLQNIHGLNLSYNFLSGSI-PES  453 (580)
Q Consensus       377 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-p~~  453 (580)
                      ++...+. ..|..         .++.    +..++++..+.+..|.+...-. ..+..++.+..|+|+.|+|...- -++
T Consensus       178 lh~~~c~~~~w~~---------~~~l----~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~  244 (418)
T KOG2982|consen  178 LHQLPCLEQLWLN---------KNKL----SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA  244 (418)
T ss_pred             hhcCCcHHHHHHH---------HHhH----HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH
Confidence            1111000 00100         0000    0225667777777776653322 33455666667777777776422 255


Q ss_pred             ccCcccCCEEECCCCcccccCch------hhcCCCCCCEEecc
Q 036717          454 FSNLKMIESLDLSHNKLNGQIPP------QLTELHSLSKFDVS  490 (580)
Q Consensus       454 ~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~Ls  490 (580)
                      +.++++|..|.+++|.+......      .++.+++++.|+=+
T Consensus       245 Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  245 LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            66777777777777776533221      23556666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=1.4e-07  Score=86.28  Aligned_cols=205  Identities=14%  Similarity=0.146  Sum_probs=104.9

Q ss_pred             HhhcCCCCcEEEcccCcCcc--ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCC-ccccC
Q 036717           74 MGIVLQKLVYMNISKNSFEG--NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF-PNYMN  150 (580)
Q Consensus        74 ~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~  150 (580)
                      ++..+++++.+||.+|.|+.  .+..-+.++|.|+.|+++.|++...|...- ....+|+.|.|.+..+.-... ..+..
T Consensus        66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhc
Confidence            33456677777777777663  233345567777777777776663332211 244567777776665543222 23456


Q ss_pred             CCCCCEEeccCcccccc--ccccccC-CCCCCEEEcccCCCCC--CCchhhhcCCCCCEEEcccCcCCCc-CchhccCCC
Q 036717          151 LTQLQLLYLDNNHFSGK--IKDGLLR-STELMVLDISNNRLSG--HIPSWMGNFSYLQILSMSKNLLEGN-IPVQFNDLL  224 (580)
Q Consensus       151 l~~L~~L~l~~n~l~~~--~~~~l~~-l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~  224 (580)
                      +|.+++|.++.|.+...  ..+.... .+.++++.+-.|....  .....-.-++++..+.+..|.+... ....+..++
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p  224 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP  224 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence            67777777777643311  1111111 1234444444332210  0000111245666666666655432 223444555


Q ss_pred             CCcEEEccCCcCccccCC--ccCCCCCcEEEeeCCcCcccCCh------hccCCCCccEEeCC
Q 036717          225 DLEILNISENNLSGSMIS--TLNLSSVEHLYLQNNALGGSIPN------TFFRGSALETLDLR  279 (580)
Q Consensus       225 ~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~  279 (580)
                      .+..|+|+.++|.....-  .-.++.|..|.++++.+.+....      .++.+++++.|+=+
T Consensus       225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            666677777666543221  11667777777777766543221      24556677776544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=4.7e-07  Score=81.79  Aligned_cols=185  Identities=18%  Similarity=0.197  Sum_probs=116.5

Q ss_pred             cCCCCcEEEcccCcCccccchh----hhcCCCCCEEEcccCcCcc----ccchHH--------HhCCCCCcEEEcccccC
Q 036717           77 VLQKLVYMNISKNSFEGNIPSS----IAKMQGLRFLDVSTNNFAG----ELSQSL--------VTNCFSLIWLDLSNNNF  140 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~----~~~~~~--------~~~l~~L~~L~L~~n~l  140 (580)
                      .||+|+..+||.|.+....|..    +++-+.|++|.+++|.+..    .+...+        ...-+.|+..+.+.|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            5777777777777776555543    4455678888887776541    111111        12346788888888887


Q ss_pred             CCcCCc----cccCCCCCCEEeccCccccccc-----cccccCCCCCCEEEcccCCCCCCCc----hhhhcCCCCCEEEc
Q 036717          141 DGQIFP----NYMNLTQLQLLYLDNNHFSGKI-----KDGLLRSTELMVLDISNNRLSGHIP----SWMGNFSYLQILSM  207 (580)
Q Consensus       141 ~~~~~~----~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l  207 (580)
                      ......    .+..-.+|+++.+..|.|....     ...+..+.+|+.||+..|.++....    ..+...+.|+.|.+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            632211    1223357888888888776321     1223556788888888888774333    33445667888888


Q ss_pred             ccCcCCCcCchhc----c--CCCCCcEEEccCCcCccccCCc-----c---CCCCCcEEEeeCCcCcc
Q 036717          208 SKNLLEGNIPVQF----N--DLLDLEILNISENNLSGSMIST-----L---NLSSVEHLYLQNNALGG  261 (580)
Q Consensus       208 ~~n~l~~~~~~~~----~--~l~~L~~L~l~~n~l~~~~~~~-----~---~~~~L~~L~l~~n~l~~  261 (580)
                      ..|-++.....++    .  ..++|..|...+|.+.+.....     +   .+|-|..|.+.+|.+..
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            8888775443332    2  3578888888888765533222     1   56778888888888863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=2.4e-08  Score=101.56  Aligned_cols=127  Identities=26%  Similarity=0.215  Sum_probs=82.2

Q ss_pred             CCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEccc
Q 036717            9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISK   88 (580)
Q Consensus         9 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~   88 (580)
                      |...+.+.|++. .+. ....-++.|+.|+|++|+++.......++.|++|||++|.+. .+|..-...|. |..|++++
T Consensus       166 L~~a~fsyN~L~-~mD-~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMD-ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHH-HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence            455566666665 332 233456777788888887776654456777788888888776 56654333344 77788888


Q ss_pred             CcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCC
Q 036717           89 NSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFD  141 (580)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  141 (580)
                      |.++..  ..+.++++|+.||+++|-+.+.-.-..+..+..|+.|+|.+|++-
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            877633  456777788888888877664333333445667777777777653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=1.1e-07  Score=76.74  Aligned_cols=80  Identities=24%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             ccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEc
Q 036717           56 LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDL  135 (580)
Q Consensus        56 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  135 (580)
                      |+.++|++|.+. ..|..+...++.++.|++++|.|+ .+|.+++.++.|+.|+++.|.+. ..|.-++ .+.++..|+.
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~-~L~~l~~Lds  130 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA-PLIKLDMLDS  130 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH-HHHhHHHhcC
Confidence            334444444444 344444333444444444444444 33444444444444444444443 3333322 2444444444


Q ss_pred             cccc
Q 036717          136 SNNN  139 (580)
Q Consensus       136 ~~n~  139 (580)
                      .+|.
T Consensus       131 ~~na  134 (177)
T KOG4579|consen  131 PENA  134 (177)
T ss_pred             CCCc
Confidence            4433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.08  E-value=3.1e-06  Score=55.30  Aligned_cols=36  Identities=39%  Similarity=0.657  Sum_probs=15.4

Q ss_pred             CCCeEecccCcceecccccccCcccCCEEECCCCccc
Q 036717          435 NIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN  471 (580)
Q Consensus       435 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  471 (580)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=4.6e-06  Score=54.50  Aligned_cols=38  Identities=39%  Similarity=0.721  Sum_probs=32.5

Q ss_pred             ccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccc
Q 036717          458 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSG  496 (580)
Q Consensus       458 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  496 (580)
                      ++|++|++++|+|+ .+|..+.++++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            47999999999999 567789999999999999999983

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.97  E-value=1.6e-05  Score=66.91  Aligned_cols=126  Identities=14%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             CChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCcccc
Q 036717           70 LPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM  149 (580)
Q Consensus        70 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  149 (580)
                      ++...|..+++|+.+.+.. .+..+....|.++++|+.+++.++ +. .++...|.++++++.+.+.+ .+.......|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence            4455555666777777664 455455556666766777777654 44 55666666666677766654 33333344555


Q ss_pred             CCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCC
Q 036717          150 NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYL  202 (580)
Q Consensus       150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  202 (580)
                      .+++|+.+++..+ +.......|.+. +++.+.+.. .+.......|.++++|
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            6666666666543 433344445554 666666554 2332334455555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.96  E-value=3.7e-07  Score=87.48  Aligned_cols=132  Identities=19%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             CCCCCEEEcccCCCCC-CCchhh-hcCCCCCEEEcccCcC-CCcCchhc-cCCCCCcEEEccCCcCcccc--CC-ccCCC
Q 036717          175 STELMVLDISNNRLSG-HIPSWM-GNFSYLQILSMSKNLL-EGNIPVQF-NDLLDLEILNISENNLSGSM--IS-TLNLS  247 (580)
Q Consensus       175 l~~L~~L~L~~n~l~~-~~~~~~-~~l~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~l~~~~--~~-~~~~~  247 (580)
                      +..|+.++.+++.-.+ ..-..+ .+..+|+.|.++.++- +......+ .+++.|+.+++..+......  .. ..+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            4455556555543221 111112 2345666666666542 11111111 23455666666655432221  11 11666


Q ss_pred             CCcEEEeeCCcCc-cc----CChhccCCCCccEEeCCCCcCc-ccCchhhccCcCcceeeccccc
Q 036717          248 SVEHLYLQNNALG-GS----IPNTFFRGSALETLDLRDNNFS-GRIPHQINEHSNLRALLLRANY  306 (580)
Q Consensus       248 ~L~~L~l~~n~l~-~~----~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~  306 (580)
                      .|+.+.+++|... +.    ....-.....|+.+.++++... ...-+.+..+++|+.+++-.++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            7777777766432 11    0112233456777777777543 2333445667777777776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.95  E-value=1.3e-05  Score=69.63  Aligned_cols=123  Identities=18%  Similarity=0.217  Sum_probs=63.4

Q ss_pred             cEEEccCCcccCCCCCC-CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccC
Q 036717           35 EVLYLINNSFSGFQLTG-AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN  113 (580)
Q Consensus        35 ~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (580)
                      ++++|.+.++..+.-.+ -..+...+||++|.+. .++.  +..+++|..|.+++|+|+.+.|.--..+++|+.|.|.+|
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            44455544444332111 2334555666666544 2211  113556666666666666555544444566666666666


Q ss_pred             cCcc--ccchHHHhCCCCCcEEEcccccCCCcC---CccccCCCCCCEEeccCc
Q 036717          114 NFAG--ELSQSLVTNCFSLIWLDLSNNNFDGQI---FPNYMNLTQLQLLYLDNN  162 (580)
Q Consensus       114 ~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~n  162 (580)
                      ++..  .+.+  ...|+.|++|.+-+|+++...   .-.+..+|+|+.||+..-
T Consensus        99 si~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   99 SIQELGDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             chhhhhhcch--hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            5541  1222  345666666666666655321   123456777777777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.86  E-value=6.6e-07  Score=85.79  Aligned_cols=295  Identities=20%  Similarity=0.161  Sum_probs=180.8

Q ss_pred             CCCEEECCCCCCcc-cCchHHhhCCCCCcEEEccCCc-ccCCCC---CCCCCCccEEEccCCC-CCccCChhHhhcCCCC
Q 036717            8 NLKYLDLSHNKLAG-NFPTWLLENNTKLEVLYLINNS-FSGFQL---TGAQHGLLSLDISKNS-FTGELPQNMGIVLQKL   81 (580)
Q Consensus         8 ~L~~L~Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L   81 (580)
                      .|+.|.+.+++-.+ .-...+..+++++++|.+.++. +++...   ...++.|++|++..|. ++...-..+...|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            57888888886332 2334455689999999988885 333211   2378999999999964 5544445566789999


Q ss_pred             cEEEcccCc-Cccc-cchhhhcCCCCCEEEcccCcCc-cccchHHHhCCCCCcEEEcccccC-CCcC-CccccCCCCCCE
Q 036717           82 VYMNISKNS-FEGN-IPSSIAKMQGLRFLDVSTNNFA-GELSQSLVTNCFSLIWLDLSNNNF-DGQI-FPNYMNLTQLQL  156 (580)
Q Consensus        82 ~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~  156 (580)
                      ++|+++++. |++. +...+.+++.++.+.+.+|.=. .+.-...-..+..+..+++.++.. ++.. ...-..+..||.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            999999874 4432 1234455777777777765211 111111223455566777666643 2211 112246788899


Q ss_pred             EeccCccc-cccccccc-cCCCCCCEEEcccCC-CCCCCchhh-hcCCCCCEEEcccCcCCC--cCchhccCCCCCcEEE
Q 036717          157 LYLDNNHF-SGKIKDGL-LRSTELMVLDISNNR-LSGHIPSWM-GNFSYLQILSMSKNLLEG--NIPVQFNDLLDLEILN  230 (580)
Q Consensus       157 L~l~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~  230 (580)
                      |+.+++.- ++..-..+ .+..+|+.+.++.++ ++...-..+ .+++.|+.+++..+....  .+...-.+++.|+++.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            99887643 22222222 567899999999886 332222222 346789999998886431  1222334678899999


Q ss_pred             ccCCcCcccc-CCc-----cCCCCCcEEEeeCCcCc-ccCChhccCCCCccEEeCCCCcCccc--CchhhccCcCcceee
Q 036717          231 ISENNLSGSM-IST-----LNLSSVEHLYLQNNALG-GSIPNTFFRGSALETLDLRDNNFSGR--IPHQINEHSNLRALL  301 (580)
Q Consensus       231 l~~n~l~~~~-~~~-----~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~  301 (580)
                      ++++...... ...     -....++.+.++++... +.....+..+++|+.+++.+++-...  +...-..+|++++..
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            9987643222 111     15678899999998754 33455677889999999999864311  112224566665544


Q ss_pred             c
Q 036717          302 L  302 (580)
Q Consensus       302 l  302 (580)
                      +
T Consensus       459 ~  459 (483)
T KOG4341|consen  459 Y  459 (483)
T ss_pred             h
Confidence            3

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.83  E-value=2.8e-05  Score=67.59  Aligned_cols=127  Identities=20%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             ccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEc
Q 036717           56 LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDL  135 (580)
Q Consensus        56 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  135 (580)
                      =+.+++++.++. .+ ..++....+...+||++|.+...  ..|..++.|..|.+++|+|+ .|.+.+..-+++|+.|.|
T Consensus        21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccccc-ch-hhccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence            355666666554 22 22333455677788888887632  45677888888888888888 676666666778888888


Q ss_pred             ccccCCCcC-CccccCCCCCCEEeccCccccccc---cccccCCCCCCEEEcccCC
Q 036717          136 SNNNFDGQI-FPNYMNLTQLQLLYLDNNHFSGKI---KDGLLRSTELMVLDISNNR  187 (580)
Q Consensus       136 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~L~~n~  187 (580)
                      .+|++.... ...+..+|.|++|.+-+|.++...   --.+..+++|+.||...-.
T Consensus        96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            888876321 234567788888888888776332   1235667888888887643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.75  E-value=5.7e-05  Score=63.50  Aligned_cols=124  Identities=16%  Similarity=0.221  Sum_probs=62.8

Q ss_pred             chhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCC
Q 036717           96 PSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS  175 (580)
Q Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (580)
                      ..+|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            45677777888888764 455 677777777778888888764 5555556677777788888865 4443445566667


Q ss_pred             CCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCC
Q 036717          176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDL  226 (580)
Q Consensus       176 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  226 (580)
                      ++|+.+++..+ +.......|.++ +++.+.+.. .+.......|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77887777654 443444556666 777777765 3333455666666555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=1.6e-05  Score=85.13  Aligned_cols=195  Identities=25%  Similarity=0.331  Sum_probs=129.7

Q ss_pred             CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccC--------CCCC---------CCCCCccEEEccCCCC-Ccc
Q 036717            8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG--------FQLT---------GAQHGLLSLDISKNSF-TGE   69 (580)
Q Consensus         8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~---------~~~~~L~~L~L~~n~l-~~~   69 (580)
                      +++..++.+.... .....+..... |+.+.|.+-....        +.+.         ..-.+|++||+++... ...
T Consensus        61 ~ltki~l~~~~~~-~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~  138 (699)
T KOG3665|consen   61 NLTKIDLKNVTLQ-HQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG  138 (699)
T ss_pred             eeEEeeccceecc-hhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence            5666777766665 33334443333 8888776542211        1111         1346899999998763 334


Q ss_pred             CChhHhhcCCCCcEEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCC-cCCcc
Q 036717           70 LPQNMGIVLQKLVYMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDG-QIFPN  147 (580)
Q Consensus        70 ~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~  147 (580)
                      -|..++..+|.|+.|.+++-.+.. .......++++|..||+|+.+++ .+ .+ .+.+++|+.|.+.+=.+.. .....
T Consensus       139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~G-IS~LknLq~L~mrnLe~e~~~~l~~  215 (699)
T KOG3665|consen  139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SG-ISRLKNLQVLSMRNLEFESYQDLID  215 (699)
T ss_pred             HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HH-HhccccHHHHhccCCCCCchhhHHH
Confidence            567778889999999999877653 23455677899999999999988 44 22 5889999999998877764 22346


Q ss_pred             ccCCCCCCEEeccCccccccc------cccccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEc
Q 036717          148 YMNLTQLQLLYLDNNHFSGKI------KDGLLRSTELMVLDISNNRLSGHIPSW-MGNFSYLQILSM  207 (580)
Q Consensus       148 ~~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l  207 (580)
                      +.++++|+.||+|........      -+.-..+|.|+.||.|+..+....-+. +...++|+.+..
T Consensus       216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence            678999999999987544221      112245899999999988877543332 233455655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.64  E-value=0.00012  Score=72.30  Aligned_cols=74  Identities=15%  Similarity=0.289  Sum_probs=48.0

Q ss_pred             CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccc-cccccCcccccCCCCCCE
Q 036717          245 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN-YLQGPIPHQLCRLRKLGI  323 (580)
Q Consensus       245 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  323 (580)
                      .+.++++|++++|.++ .+|.   -..+|+.|.+++|.--..+|..+.  ++|+.|++++| .+. .+|.      .|+.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence            4678888999988877 4452   234688888887543335665442  57888888887 444 3443      4666


Q ss_pred             EEeeCCee
Q 036717          324 MDLSHNRL  331 (580)
Q Consensus       324 L~l~~n~l  331 (580)
                      |+++++..
T Consensus       117 L~L~~n~~  124 (426)
T PRK15386        117 LEIKGSAT  124 (426)
T ss_pred             EEeCCCCC
Confidence            77765543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=0.00028  Score=69.78  Aligned_cols=54  Identities=13%  Similarity=0.178  Sum_probs=26.8

Q ss_pred             CCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccC
Q 036717           31 NTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKN   89 (580)
Q Consensus        31 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n   89 (580)
                      +.+++.|++++|.++.++  ....+|+.|.+++|.-...+|..+   .++|++|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence            455666666666555432  333456666665543222344322   235555555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=5e-05  Score=81.48  Aligned_cols=150  Identities=21%  Similarity=0.291  Sum_probs=103.9

Q ss_pred             CCCCEEECCCCC-CcccCchHHhhCCCCCcEEEccCCcccCCCCC---CCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717            7 FNLKYLDLSHNK-LAGNFPTWLLENNTKLEVLYLINNSFSGFQLT---GAQHGLLSLDISKNSFTGELPQNMGIVLQKLV   82 (580)
Q Consensus         7 ~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   82 (580)
                      .+|+.||+++.. ++..-|..+...+|.|+.|.+++-.+....+.   .++++|..||+|+.+++ .+ .++ +.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHH
Confidence            478999999875 33344556677899999999998777654322   47899999999999988 44 444 4789999


Q ss_pred             EEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccc--cch---HHHhCCCCCcEEEcccccCCCcCCccc-cCCCCCC
Q 036717           83 YMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGE--LSQ---SLVTNCFSLIWLDLSNNNFDGQIFPNY-MNLTQLQ  155 (580)
Q Consensus        83 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~--~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~  155 (580)
                      +|.+.+=.+.. ..-..+.++++|++||+|.......  +..   +....+|+|+.||.+++.+.....+.+ ..-++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            99888776653 3335677899999999998755421  111   112457899999999888775443332 2344555


Q ss_pred             EEec
Q 036717          156 LLYL  159 (580)
Q Consensus       156 ~L~l  159 (580)
                      .+.+
T Consensus       279 ~i~~  282 (699)
T KOG3665|consen  279 QIAA  282 (699)
T ss_pred             hhhh
Confidence            4443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.27  E-value=6.1e-05  Score=79.30  Aligned_cols=10  Identities=40%  Similarity=0.587  Sum_probs=5.3

Q ss_pred             ccEEeCCCCc
Q 036717          273 LETLDLRDNN  282 (580)
Q Consensus       273 L~~L~l~~n~  282 (580)
                      ++.|+++.+.
T Consensus       403 l~~L~l~~~~  412 (482)
T KOG1947|consen  403 LRVLNLSDCR  412 (482)
T ss_pred             cceEecccCc
Confidence            5555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.00018  Score=65.47  Aligned_cols=86  Identities=21%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCC--CCCccCChhHhhcCCCCcEEEcccCcCccc-cchhhhcCCCCC
Q 036717           30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKN--SFTGELPQNMGIVLQKLVYMNISKNSFEGN-IPSSIAKMQGLR  106 (580)
Q Consensus        30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~  106 (580)
                      .+..|+.|.+.+..++...-...+++|+.|+++.|  ++.+.++.-+ ..+|+|+++++++|++... --..+..+++|.
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchh
Confidence            45556666666666655443445666677777766  4444443333 2456666666666666520 011233445555


Q ss_pred             EEEcccCcCc
Q 036717          107 FLDVSTNNFA  116 (580)
Q Consensus       107 ~L~L~~n~l~  116 (580)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            5555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=4.4e-05  Score=69.58  Aligned_cols=101  Identities=20%  Similarity=0.154  Sum_probs=55.3

Q ss_pred             CCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCcccc-chhhhcCCCCCEEE
Q 036717           31 NTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNI-PSSIAKMQGLRFLD  109 (580)
Q Consensus        31 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~  109 (580)
                      +.+.++|++.+|.++++++-..++.|+.|.||-|.|+ .+...  ..|++|+.|+|..|.|.... -..+.++++|+.|-
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs-sL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS-SLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccc-cchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4455666666666666655556666666666666665 33221  24666666666666665321 12345566666666


Q ss_pred             cccCcCccccch----HHHhCCCCCcEEE
Q 036717          110 VSTNNFAGELSQ----SLVTNCFSLIWLD  134 (580)
Q Consensus       110 L~~n~l~~~~~~----~~~~~l~~L~~L~  134 (580)
                      |..|.-.+..+.    ..+.-+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            666655443332    2234456666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.83  E-value=0.00011  Score=67.06  Aligned_cols=82  Identities=16%  Similarity=0.103  Sum_probs=39.7

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      +.+.|++-+|.+. .|  .+...++.|++|.|+-|+|+..  ..+..|++|+.|+|..|.|..--.-..+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4445555555554 22  2233455566666666655533  23455555555555555554222222234445555555


Q ss_pred             cccccCC
Q 036717          135 LSNNNFD  141 (580)
Q Consensus       135 L~~n~l~  141 (580)
                      |..|.-.
T Consensus        95 L~ENPCc  101 (388)
T KOG2123|consen   95 LDENPCC  101 (388)
T ss_pred             hccCCcc
Confidence            5544443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.66  E-value=0.00037  Score=73.31  Aligned_cols=189  Identities=22%  Similarity=0.056  Sum_probs=115.8

Q ss_pred             ccCCCCCEEECCCC-CCcccCchHHhhCCCCCcEEEccCC-cc-cCC-----CCCCCCCCccEEEccCCC-CCccCChhH
Q 036717            4 RHQFNLKYLDLSHN-KLAGNFPTWLLENNTKLEVLYLINN-SF-SGF-----QLTGAQHGLLSLDISKNS-FTGELPQNM   74 (580)
Q Consensus         4 ~~~~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n-~l-~~~-----~~~~~~~~L~~L~L~~n~-l~~~~~~~~   74 (580)
                      ..++.|+.|.+.++ .++..--..+...+++|+.|+++++ .. ...     .....+++|+.|+++.+. +++..-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            45788999999988 4542222344568999999999973 21 111     112366899999999998 665444555


Q ss_pred             hhcCCCCcEEEcccCc-Cccccch-hhhcCCCCCEEEcccCcCcc-ccchHHHhCCCCCcEEEcccccCCCcCCccccCC
Q 036717           75 GIVLQKLVYMNISKNS-FEGNIPS-SIAKMQGLRFLDVSTNNFAG-ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNL  151 (580)
Q Consensus        75 ~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  151 (580)
                      ...|++|++|.+.++. ++...-. ....++.|++|+++.+...+ ..-.....++++++.|.+....-          +
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c  334 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------C  334 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------C
Confidence            5568999999988777 5543323 34458889999999886542 21222345678877766543321          4


Q ss_pred             CCCCEEeccCcccc---ccccccccCCCCCCEEEcccCCCCCCC-chhhhcCCCC
Q 036717          152 TQLQLLYLDNNHFS---GKIKDGLLRSTELMVLDISNNRLSGHI-PSWMGNFSYL  202 (580)
Q Consensus       152 ~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L  202 (580)
                      +.++.+.+....-.   .........+++++.+.+..+...... ...+.+++.|
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            44555554433221   122223466778888888777744322 2344555555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.0014  Score=59.79  Aligned_cols=40  Identities=28%  Similarity=0.452  Sum_probs=18.1

Q ss_pred             CCCCCCEEEcccC--CCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717          174 RSTELMVLDISNN--RLSGHIPSWMGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       174 ~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~  213 (580)
                      .+++|++|.++.|  ++.+-++.....+++|+++++++|++.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3445555555555  333222322333455555555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.02  E-value=0.0028  Score=34.29  Aligned_cols=12  Identities=58%  Similarity=0.753  Sum_probs=5.4

Q ss_pred             CCEEECCCCccc
Q 036717          460 IESLDLSHNKLN  471 (580)
Q Consensus       460 L~~L~Ls~N~l~  471 (580)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.82  E-value=0.0038  Score=33.75  Aligned_cols=20  Identities=60%  Similarity=0.717  Sum_probs=11.4

Q ss_pred             CCeEecccCcceecccccccC
Q 036717          436 IHGLNLSYNFLSGSIPESFSN  456 (580)
Q Consensus       436 L~~L~Ls~N~l~~~~p~~~~~  456 (580)
                      |++|||++|+++ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            556666666666 45544543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.94  E-value=0.00069  Score=69.68  Aligned_cols=109  Identities=20%  Similarity=0.184  Sum_probs=57.0

Q ss_pred             ccEEEccCCCCCccCChhHh---hcCCCCcEEEcccCcCccccchhhh----cC-CCCCEEEcccCcCcccc----chHH
Q 036717           56 LLSLDISKNSFTGELPQNMG---IVLQKLVYMNISKNSFEGNIPSSIA----KM-QGLRFLDVSTNNFAGEL----SQSL  123 (580)
Q Consensus        56 L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~----~~~~  123 (580)
                      +..+.|.+|.+.......+.   ...+.|..|++++|.+.+..-..+.    .. ..+++|++..|.+++..    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            66677777776644333332   2345677777777776633222222    22 44666777777666432    2222


Q ss_pred             HhCCCCCcEEEcccccCCC----cCCcc----ccCCCCCCEEeccCcccc
Q 036717          124 VTNCFSLIWLDLSNNNFDG----QIFPN----YMNLTQLQLLYLDNNHFS  165 (580)
Q Consensus       124 ~~~l~~L~~L~L~~n~l~~----~~~~~----~~~l~~L~~L~l~~n~l~  165 (580)
                       .....++.++++.|.+..    ..+..    +....++++|.+.++.++
T Consensus       169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence             235667777777776631    11111    223445555666555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.70  E-value=0.0029  Score=56.55  Aligned_cols=84  Identities=21%  Similarity=0.228  Sum_probs=70.3

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD  488 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  488 (580)
                      ....+.||++.|++. .....|+-++.|..|+++.|++. ..|+.++.+..+..+++..|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            566788999999887 55566788888899999999988 67888888888889998888887 6788888999999999


Q ss_pred             ccCCccc
Q 036717          489 VSYNNLS  495 (580)
Q Consensus       489 Ls~N~l~  495 (580)
                      +-.|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9888764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.69  E-value=0.039  Score=27.56  Aligned_cols=13  Identities=62%  Similarity=0.917  Sum_probs=6.0

Q ss_pred             CCCEEECCCCCCc
Q 036717            8 NLKYLDLSHNKLA   20 (580)
Q Consensus         8 ~L~~L~Ls~n~i~   20 (580)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            5566666666554

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.41  E-value=0.0012  Score=67.98  Aligned_cols=186  Identities=20%  Similarity=0.236  Sum_probs=95.4

Q ss_pred             CcEEEcccCcCccccch----hhhcCCCCCEEEcccCcCccccchHHHhCC----CCCcEEEcccccCCCcCCccccCCC
Q 036717           81 LVYMNISKNSFEGNIPS----SIAKMQGLRFLDVSTNNFAGELSQSLVTNC----FSLIWLDLSNNNFDGQIFPNYMNLT  152 (580)
Q Consensus        81 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~  152 (580)
                      +..+.+.+|.+......    .+...+.|+.|++++|.+.+.--..+...+    ..+++|++..|.++.....      
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~------  162 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA------  162 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH------
Confidence            55666666666543332    334456666666666666532222111111    2334444444444321111      


Q ss_pred             CCCEEeccCccccccccccccCCCCCCEEEcccCCCCC----CCchh----hhcCCCCCEEEcccCcCCCc----Cchhc
Q 036717          153 QLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSG----HIPSW----MGNFSYLQILSMSKNLLEGN----IPVQF  220 (580)
Q Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~----~~~l~~L~~L~l~~n~l~~~----~~~~~  220 (580)
                                    .+...+.....++.++++.|.+..    .++..    +....++++|.+++|.++..    ....+
T Consensus       163 --------------~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l  228 (478)
T KOG4308|consen  163 --------------PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVL  228 (478)
T ss_pred             --------------HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHH
Confidence                          122223334444555555544421    11122    22355666677766665521    11233


Q ss_pred             cCCCC-CcEEEccCCcCccccCCcc-----CC-CCCcEEEeeCCcCcccC----ChhccCCCCccEEeCCCCcCccc
Q 036717          221 NDLLD-LEILNISENNLSGSMISTL-----NL-SSVEHLYLQNNALGGSI----PNTFFRGSALETLDLRDNNFSGR  286 (580)
Q Consensus       221 ~~l~~-L~~L~l~~n~l~~~~~~~~-----~~-~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~  286 (580)
                      ...+. +..+++..|.+.+......     .+ ..++.++++.|.++...    ...+..++.++.+.++.|.+...
T Consensus       229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            34444 5567777777765422111     23 56788889998887543    34556678899999999988743

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.07  E-value=0.1  Score=29.39  Aligned_cols=23  Identities=39%  Similarity=0.551  Sum_probs=18.5

Q ss_pred             CCCCCEEECCCCCCcccCchHHhh
Q 036717            6 QFNLKYLDLSHNKLAGNFPTWLLE   29 (580)
Q Consensus         6 ~~~L~~L~Ls~n~i~~~~~~~~~~   29 (580)
                      +++|+.|+|++|+|+ .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467889999999888 88887763

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.07  E-value=0.1  Score=29.39  Aligned_cols=23  Identities=39%  Similarity=0.551  Sum_probs=18.5

Q ss_pred             CCCCCEEECCCCCCcccCchHHhh
Q 036717            6 QFNLKYLDLSHNKLAGNFPTWLLE   29 (580)
Q Consensus         6 ~~~L~~L~Ls~n~i~~~~~~~~~~   29 (580)
                      +++|+.|+|++|+|+ .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467889999999888 88887763

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.65  E-value=0.098  Score=29.49  Aligned_cols=16  Identities=38%  Similarity=0.536  Sum_probs=9.6

Q ss_pred             ccCCEEECCCCccccc
Q 036717          458 KMIESLDLSHNKLNGQ  473 (580)
Q Consensus       458 ~~L~~L~Ls~N~l~~~  473 (580)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.65  E-value=0.098  Score=29.49  Aligned_cols=16  Identities=38%  Similarity=0.536  Sum_probs=9.6

Q ss_pred             ccCCEEECCCCccccc
Q 036717          458 KMIESLDLSHNKLNGQ  473 (580)
Q Consensus       458 ~~L~~L~Ls~N~l~~~  473 (580)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.86  E-value=0.014  Score=52.32  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717           77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL  156 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  156 (580)
                      .+.+.+.||++.|++. ..-..|..++.|..|+++.|++. ..|.++ .....++.+++.+|..+ ..|.++...+++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            3455555566555554 22334444555555555555554 444433 33444444444444443 33444444444444


Q ss_pred             EeccCcc
Q 036717          157 LYLDNNH  163 (580)
Q Consensus       157 L~l~~n~  163 (580)
                      +++-.+.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            4444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.38  E-value=0.15  Score=28.08  Aligned_cols=13  Identities=23%  Similarity=0.429  Sum_probs=4.6

Q ss_pred             CCcEEEcccCcCc
Q 036717           80 KLVYMNISKNSFE   92 (580)
Q Consensus        80 ~L~~L~l~~n~l~   92 (580)
                      +|++|++++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.50  E-value=0.12  Score=45.63  Aligned_cols=33  Identities=9%  Similarity=0.131  Sum_probs=17.3

Q ss_pred             CcEEEcccCcCccccchhhhcCCCCCEEEcccC
Q 036717           81 LVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN  113 (580)
Q Consensus        81 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (580)
                      ++.+|-++..|..+.-+.+.+++.++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            445555555555444455555555555555444

>TIGR00864 PCC polycystin cation channel protein

Probab=86.27  E-value=0.43  Score=58.11  Aligned_cols=37  Identities=27%  Similarity=0.221  Sum_probs=33.6

Q ss_pred             ECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          464 DLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       464 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      ||++|+|+.+.+..|..+++|+.|+|++|++.|.|.-
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L   37 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL   37 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence            6899999988888999999999999999999999975

Note: this model has been restricted to the amino half because for technical reasons.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.75  E-value=0.14  Score=45.22  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=16.1

Q ss_pred             CCccEEeCCCC-cCcccCchhhccCcCcceeecc
Q 036717          271 SALETLDLRDN-NFSGRIPHQINEHSNLRALLLR  303 (580)
Q Consensus       271 ~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~  303 (580)
                      ++|+.|++++| +|+...-.++..+++|+.|.+.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            34555555544 3443333444555555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	580
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-62
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-18
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-62
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-14
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		6e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-04
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		5e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		5e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  236 bits (603), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 284/560 (50%), Gaps = 66/560 (11%)
Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
           FL     L++LD+S NKL+G+F +  +   T+L++L + +N F G         L  L +
Sbjct: 218 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276
Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP------------------------- 96
           ++N FTGE+P  +      L  +++S N F G +P                         
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 97  SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQ--L 154
            ++ KM+GL+ LD+S N F+GEL +SL     SL+ LDLS+NNF G I PN     +  L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
           Q LYL NN F+GKI   L   +EL+ L +S N LSG IPS +G+ S L+ L +  N+LEG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL 273
            IP +   +  LE L +  N+L+G + S L N +++  + L NN L G IP    R   L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 274 ETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYG 333
             L L +N+FSG IP ++ +                         R L  +DL+ N   G
Sbjct: 517 AILKLSNNSFSGNIPAELGD------------------------CRSLIWLDLNTNLFNG 552
Query: 334 SIPACITNSLFWKVGNESL-YQLDEEGADVGNVDIRDYYNSTVQL----RLDESDLRWLV 388
           +IPA    ++F + G  +  +   +    + N  ++   +    L     +    L  L 
Sbjct: 553 TIPA----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 389 KQVEVNFMTKNRYESYKGVILEH---MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNF 445
            +   N +T   Y  +     ++   M  LD+S N L+G IP EIG +  +  LNL +N 
Sbjct: 609 TRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 446 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
           +SGSIP+   +L+ +  LDLS NKL+G+IP  ++ L  L++ D+S NNLSGPIP+  QF 
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 506 TFDESSYRGNLHLCGPPINK 525
           TF  + +  N  LCG P+ +
Sbjct: 728 TFPPAKFLNNPGLCGYPLPR 747

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 171/397 (43%), Gaps = 60/397 (15%)
Query: 129 SLIWLDLSNNNFDGQI--FPNYMNLTQLQLLYLDNN--HFSGKIKDGLLRSTELMVLDIS 184
           SL  LDLS N+  G +    +  + + L+ L + +N   F GK+  GL +   L VLD+S
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 159
Query: 185 NNRLSG-HIPSWM--GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
            N +SG ++  W+       L+ L++S N + G++ V     ++LE L++S NN S  + 
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP 217
Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXX 301
              + S+++HL +  N L G         + L+ L++  N F G IP             
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------------- 264
Query: 302 XXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
                   P+P     L+ L  + L+ N+  G IP       F     ++L  LD  G  
Sbjct: 265 --------PLP-----LKSLQYLSLAENKFTGEIPD------FLSGACDTLTGLDLSGNH 305
Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNR--------YESYKGVILEHMA 413
                +  ++ S   L            ++ ++ + K R        +  + G + E + 
Sbjct: 306 FYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 414 GL-------DLSSNELTGNI-PSEIGDLQN-IHGLNLSYNFLSGSIPESFSNLKMIESLD 464
            L       DLSSN  +G I P+   + +N +  L L  N  +G IP + SN   + SL 
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 465 LSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
           LS N L+G IP  L  L  L    +  N L G IP +
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  236 bits (602), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 284/560 (50%), Gaps = 66/560 (11%)
Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
           FL     L++LD+S NKL+G+F +  +   T+L++L + +N F G         L  L +
Sbjct: 215 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 273
Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP------------------------- 96
           ++N FTGE+P  +      L  +++S N F G +P                         
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 97  SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQ--L 154
            ++ KM+GL+ LD+S N F+GEL +SL     SL+ LDLS+NNF G I PN     +  L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
           Q LYL NN F+GKI   L   +EL+ L +S N LSG IPS +G+ S L+ L +  N+LEG
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL 273
            IP +   +  LE L +  N+L+G + S L N +++  + L NN L G IP    R   L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 274 ETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYG 333
             L L +N+FSG IP ++ +                         R L  +DL+ N   G
Sbjct: 514 AILKLSNNSFSGNIPAELGD------------------------CRSLIWLDLNTNLFNG 549
Query: 334 SIPACITNSLFWKVGNESL-YQLDEEGADVGNVDIRDYYNSTVQL----RLDESDLRWLV 388
           +IPA    ++F + G  +  +   +    + N  ++   +    L     +    L  L 
Sbjct: 550 TIPA----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 389 KQVEVNFMTKNRYESYKGVILEH---MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNF 445
            +   N +T   Y  +     ++   M  LD+S N L+G IP EIG +  +  LNL +N 
Sbjct: 606 TRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 446 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
           +SGSIP+   +L+ +  LDLS NKL+G+IP  ++ L  L++ D+S NNLSGPIP+  QF 
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 506 TFDESSYRGNLHLCGPPINK 525
           TF  + +  N  LCG P+ +
Sbjct: 725 TFPPAKFLNNPGLCGYPLPR 744

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 171/397 (43%), Gaps = 60/397 (15%)
Query: 129 SLIWLDLSNNNFDGQI--FPNYMNLTQLQLLYLDNN--HFSGKIKDGLLRSTELMVLDIS 184
           SL  LDLS N+  G +    +  + + L+ L + +N   F GK+  GL +   L VLD+S
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 156
Query: 185 NNRLSG-HIPSWM--GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
            N +SG ++  W+       L+ L++S N + G++ V     ++LE L++S NN S  + 
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP 214
Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXX 301
              + S+++HL +  N L G         + L+ L++  N F G IP             
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------------- 261
Query: 302 XXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
                   P+P     L+ L  + L+ N+  G IP       F     ++L  LD  G  
Sbjct: 262 --------PLP-----LKSLQYLSLAENKFTGEIPD------FLSGACDTLTGLDLSGNH 302
Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNR--------YESYKGVILEHMA 413
                +  ++ S   L            ++ ++ + K R        +  + G + E + 
Sbjct: 303 FYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 414 GL-------DLSSNELTGNI-PSEIGDLQN-IHGLNLSYNFLSGSIPESFSNLKMIESLD 464
            L       DLSSN  +G I P+   + +N +  L L  N  +G IP + SN   + SL 
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 465 LSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
           LS N L+G IP  L  L  L    +  N L G IP +
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 27/251 (10%)
Query: 281 NNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACIT 340
           NN  G IP  I + +           + G IP  L +++ L  +D S+N L G++P  I+
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 341 NSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNR 400
           +         +L  +  +G  +    I D Y S  +L        +    +  N +T   
Sbjct: 147 SL-------PNLVGITFDGNRISGA-IPDSYGSFSKL--------FTSMTISRNRLTGKI 190
Query: 401 YESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLS---GSIPESFSNL 457
             ++  +   ++A +DLS N L G+     G  +N   ++L+ N L+   G +  S    
Sbjct: 191 PPTFANL---NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS---- 243
Query: 458 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLH 517
           K +  LDL +N++ G +P  LT+L  L   +VS+NNL G IP       FD S+Y  N  
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 518 LCGPPINKSCT 528
           LCG P+  +CT
Sbjct: 304 LCGSPL-PACT 313

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 173/398 (43%), Gaps = 71/398 (17%)
Query: 202 LQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST--LNLSSVEHLYLQNNAL 259
           L++L+++ N +       F  L +L++LN+S N L G + S+    L  V ++ LQ N +
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 260 GGSIPNTFFRGSALETLDLRDN-----NFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQ 314
                 TF     L+TLDLRDN     +F   IP                 +L G   ++
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD---------------IFLSG---NK 392
Query: 315 LCRLRKLGI----MDLSHNRLYGSIPACITNSLFW--KVGNESLYQLDEEGADVGNVDIR 368
           L  L K+ +    + LS NRL         + L++  +V +  +  L++      + D  
Sbjct: 393 LVTLPKINLTANLIHLSENRLEN------LDILYFLLRVPHLQILILNQNRFSSCSGDQT 446
Query: 369 DYYNSTV-QLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP 427
              N ++ QL L E+ L       ++ + T+  ++ ++G  L H+  L L+ N L    P
Sbjct: 447 PSENPSLEQLFLGENML-------QLAWETELCWDVFEG--LSHLQVLYLNHNYLNSLPP 497
Query: 428 SEIGDLQNIHGLNLSYNFLS----GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 483
                L  + GL+L+ N L+      +P +      +E LD+S N+L   + P      S
Sbjct: 498 GVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDISRNQL---LAPNPDVFVS 548
Query: 484 LSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT-----NLPKLLEPSS 538
           LS  D+++N          + STF       N+ + GPP +  C      +   L   S+
Sbjct: 549 LSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST 604
Query: 539 KGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPY 576
           +G ++E  +  + F   F+   VTL L L+ IL +  +
Sbjct: 605 EGCDEEEVLKSLKFSL-FIVCTVTLTLFLMTILTVTKF 641

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 113/257 (43%), Gaps = 45/257 (17%)
Query: 68  GELPQNMGIVLQKLVYM-NISKNSF-EGNIPSSIAKMQGLRFLDVSTN--NFAGELSQSL 123
           G+ P      L++L +  N   N+F E ++PS       L FLD+S N  +F G  SQS 
Sbjct: 341 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-------LEFLDLSRNGLSFKGCCSQSD 393
Query: 124 VTNCFSLIWLDLSNNNFDGQIF--PNYMNLTQLQ-----------------------LLY 158
                SL +LDLS   F+G I    N++ L QL+                       L+Y
Sbjct: 394 FGT-ISLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 159 LDNNHFSGKIK-DGLLRS-TELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGN 215
           LD +H   ++  +G+    + L VL ++ N    + +P        L  L +S+  LE  
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 216 IPVQFNDLLDLEILNISENN-LSGSMISTLNLSSVEHL-YLQNNALGGSIPNTFFRGSAL 273
            P  FN L  L++LN+S NN  S        L+S++ L Y  N+ +           S+L
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 569
Query: 274 ETLDLRDNNFSGRIPHQ 290
             L+L  N+F+    HQ
Sbjct: 570 AFLNLTQNDFACTCEHQ 586

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 44/230 (19%)
Query: 68  GELPQNMGIVLQKLVYM-NISKNSF-EGNIPSSIAKMQGLRFLDVSTN--NFAGELSQSL 123
           G+ P      L++L +  N   N+F E ++PS       L FLD+S N  +F G  SQS 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-------LEFLDLSRNGLSFKGCCSQSD 369
Query: 124 VTNCFSLIWLDLSNNNFDGQIF--PNYMNLTQLQ-----------------------LLY 158
                SL +LDLS   F+G I    N++ L QL+                       L+Y
Sbjct: 370 FGTT-SLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 159 LDNNHFSGKIK-DGLLRS-TELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGN 215
           LD +H   ++  +G+    + L VL ++ N    + +P        L  L +S+  LE  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 216 IPVQFNDLLDLEILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIP 264
            P  FN L  L++LN++ N L        + L+S++ ++L  N    S P
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 113/257 (43%), Gaps = 45/257 (17%)
Query: 68  GELPQNMGIVLQKLVYM-NISKNSF-EGNIPSSIAKMQGLRFLDVSTN--NFAGELSQSL 123
           G+ P      L++L +  N   N+F E ++PS       L FLD+S N  +F G  SQS 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-------LEFLDLSRNGLSFKGCCSQSD 369
Query: 124 VTNCFSLIWLDLSNNNFDGQIF--PNYMNLTQLQ-----------------------LLY 158
                SL +LDLS   F+G I    N++ L QL+                       L+Y
Sbjct: 370 FGTT-SLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 159 LDNNHFSGKIK-DGLLRS-TELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGN 215
           LD +H   ++  +G+    + L VL ++ N    + +P        L  L +S+  LE  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 216 IPVQFNDLLDLEILNISENN-LSGSMISTLNLSSVEHL-YLQNNALGGSIPNTFFRGSAL 273
            P  FN L  L++LN+S NN  S        L+S++ L Y  N+ +           S+L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 274 ETLDLRDNNFSGRIPHQ 290
             L+L  N+F+    HQ
Sbjct: 546 AFLNLTQNDFACTCEHQ 562

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 25/255 (9%)
Query: 50  TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKN--SFEGNIPSSIAKMQGLRF 107
           TG       L++  N     LP  +   L +L  +++S N  SF+G    S      L++
Sbjct: 24  TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82
Query: 108 LDVSTN-------NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLD 160
           LD+S N       NF G L Q        L  LD  ++N   Q+    + L+   L+YLD
Sbjct: 83  LDLSFNGVITMSSNFLG-LEQ--------LEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD 132
Query: 161 NNHFSGKIK-DGLLRS-TELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGNIP 217
            +H   ++  +G+    + L VL ++ N    + +P        L  L +S+  LE   P
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 218 VQFNDLLDLEILNISENN-LSGSMISTLNLSSVEHL-YLQNNALGGSIPNTFFRGSALET 275
             FN L  L++LN+S NN  S        L+S++ L Y  N+ +           S+L  
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252
Query: 276 LDLRDNNFSGRIPHQ 290
           L+L  N+F+    HQ
Sbjct: 253 LNLTQNDFACTCEHQ 267

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 147 NYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN-RLSGHIPSWMGNFSYLQIL 205
           ++ +   L +L+L +N  +G         T L  LD+S+N +L    P+      +L  L
Sbjct: 50  SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 206 SMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 264
            + +  L+   P  F  L  L+ L + +NNL     +T  +L ++ HL+L  N +  S+P
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI-PSVP 168
Query: 265 NTFFRG-SALETLDLRDNNFSGRIPHQINE 293
              FRG  +L+ L L  N+ +   PH   +
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRD 198

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 103/471 (21%), Positives = 172/471 (36%), Gaps = 81/471 (17%)
Query: 83  YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDG 142
           Y+++S NS      +S +++Q L+FL V        +  +      SLI L L  N F  
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDG----LLRSTELMVLDISNNRLSGHIPSWMGN 198
                +  L  L++L L   +  G +  G     L S E++VL   NN       S+  N
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR-DNNIKKIQPASFFLN 152
Query: 199 FSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNA 258
                +L ++ N ++    +   DLL          N  G   + L LSS+    +    
Sbjct: 153 MRRFHVLDLTFNKVKS---ICEEDLL----------NFQGKHFTLLRLSSITLQDMNEYW 199
Query: 259 LGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSXXXXXXXXXXYLQGPIPHQLCRL 318
           LG       F+ +++ TLDL  N F   +                               
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAK----------------------------- 230
Query: 319 RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLR 378
                      R + +I      SL       + Y +   G+  G+ + +D  N T +  
Sbjct: 231 -----------RFFDAIAGTKIQSLIL----SNSYNM---GSSFGHTNFKDPDNFTFK-G 271
Query: 379 LDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLD---LSSNELTGNIPSEIGDLQN 435
           L+ S        V+   ++K++  +    +  H   L+   L+ NE+     +    L +
Sbjct: 272 LEASG-------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 436 IHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           +  LNLS NFL       F NL  +E LDLS+N +          L +L +  +  N L 
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 496 GPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESA 546
             +PD      FD  +    + L   P + SC  +  L    +K ++ E  
Sbjct: 385 S-VPD----GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 430

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	580
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-155
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-30
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  463 bits (1193), Expect = e-155
 Identities = 173/544 (31%), Positives = 257/544 (47%), Gaps = 8/544 (1%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            L++LD+S NKL+G+F   +    T+L++L + +N F G         L  L +++N FT
Sbjct: 224 ALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
           GE+P  +      L  +++S N F G +P        L  L +S+NNF+GEL    +   
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLT-QLQLLYLDNNHFSGKIKDGLLRS--TELMVLDIS 184
             L  LDLS N F G++  +  NL+  L  L L +N+FSG I   L ++    L  L + 
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
           NN  +G IP  + N S L  L +S N L G IP     L  L  L +  N L G +   L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

Query: 245 -NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
             + ++E L L  N L G IP+     + L  + L +N  +G IP  I    NL  L L 
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
            N   G IP +L   R L  +DL+ N   G+IPA +         N    +      + G
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582

Query: 364 NVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRY---ESYKGVILEHMAGLDLSSN 420
                    + ++ +   S+    +       +T   Y    S        M  LD+S N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 421 ELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 480
            L+G IP EIG +  +  LNL +N +SGSIP+   +L+ +  LDLS NKL+G+IP  ++ 
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

Query: 481 LHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSKG 540
           L  L++ D+S NNLSGPIP+  QF TF  + +  N  LCG P+ +   +         + 
Sbjct: 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 762

Query: 541 AEDE 544
               
Sbjct: 763 HHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  259 bits (663), Expect = 2e-77
 Identities = 105/342 (30%), Positives = 162/342 (47%), Gaps = 13/342 (3%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENN--TKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNS 65
           +L+ LDLS N ++G      + ++   +L+ L +  N  SG         L  LD+S N+
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
           F+  +P         L +++IS N   G+   +I+    L+ L++S+N F G +      
Sbjct: 212 FSTGIPFLGD--CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--- 266

Query: 126 NCFSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
              SL +L L+ N F G+I          L  L L  NHF G +       + L  L +S
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 185 NNRLSGHIP-SWMGNFSYLQILSMSKNLLEGNIPVQFNDLL-DLEILNISENNLSGSM-- 240
           +N  SG +P   +     L++L +S N   G +P    +L   L  L++S NN SG +  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 241 -ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA 299
            +     ++++ LYLQNN   G IP T    S L +L L  N  SG IP  +   S LR 
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 300 LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN 341
           L L  N L+G IP +L  ++ L  + L  N L G IP+ ++N
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  231 bits (591), Expect = 4e-67
 Identities = 104/348 (29%), Positives = 163/348 (46%), Gaps = 23/348 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG-----FQLTGAQHGLLSLDIS 62
            L+ L LS++ + G+      + +  L  L L  NS SG       L      L  L++S
Sbjct: 78  GLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG-LKFLNVS 134

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIA---KMQGLRFLDVSTNNFAGEL 119
            N+       + G+ L  L  +++S NS  G              L+ L +S N  +G++
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194

Query: 120 SQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELM 179
               V+ C +L +LD+S+NNF   I P   + + LQ L +  N  SG     +   TEL 
Sbjct: 195 D---VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250

Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD-LEILNISENNLSG 238
           +L+IS+N+  G IP        LQ LS+++N   G IP   +   D L  L++S N+  G
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 239 SMISTL-NLSSVEHLYLQNNALGGSIP-NTFFRGSALETLDLRDNNFSGRIPHQI-NEHS 295
           ++     + S +E L L +N   G +P +T  +   L+ LDL  N FSG +P  + N  +
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368

Query: 296 NLRALLLRANYLQGPIPHQLCR--LRKLGIMDLSHNRLYGSIPACITN 341
           +L  L L +N   GPI   LC+     L  + L +N   G IP  ++N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  221 bits (566), Expect = 2e-63
 Identities = 102/343 (29%), Positives = 155/343 (45%), Gaps = 16/343 (4%)

Query: 12  LDLSHNKLAGNFPT--WLLENNTKLEVLYLINNSFSG-FQLTGAQHGLLSLDISKNSFTG 68
           +DLS   L   F      L + T LE L+L N+  +G          L SLD+S+NS +G
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 69  ELPQNMGIV-LQKLVYMNISKNSFEGNIP-SSIAKMQGLRFLDVSTNNFAGELSQSLVT- 125
            +     +     L ++N+S N+ +     S   K+  L  LD+S N+ +G      V  
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 126 -NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
             C  L  L +S N   G +  +      L+ L + +N+FS  I   L   + L  LDIS
Sbjct: 175 DGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDIS 231

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
            N+LSG     +   + L++L++S N   G IP     L  L+ L+++EN  +G +   L
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-PLP-LKSLQYLSLAENKFTGEIPDFL 289

Query: 245 --NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQ-INEHSNLRALL 301
                ++  L L  N   G++P  F   S LE+L L  NNFSG +P   + +   L+ L 
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 302 LRANYLQGPIPHQLCRLR-KLGIMDLSHNRLYGSIPACITNSL 343
           L  N   G +P  L  L   L  +DLS N   G I   +  + 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  191 bits (488), Expect = 9e-53
 Identities = 76/290 (26%), Positives = 124/290 (42%), Gaps = 17/290 (5%)

Query: 58  SLDISKNSFT---GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
           S+D+S          +  ++   L  L  + +S +   G++         L  LD+S N+
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 115 FAGELSQSL-VTNCFSLIWLDLSNNNFDGQI-FPNYMNLTQLQLLYLDNNHFSGKIKDGL 172
            +G ++    + +C  L +L++S+N  D        + L  L++L L  N  SG    G 
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 173 LRS---TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEIL 229
           + S    EL  L IS N++SG +   +     L+ L +S N     IP    D   L+ L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHL 228

Query: 230 NISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIP 288
           +IS N LSG     +   + ++ L + +N   G IP       +L+ L L +N F+G IP
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 286

Query: 289 HQI-NEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA 337
             +      L  L L  N+  G +P        L  + LS N   G +P 
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  159 bits (404), Expect = 1e-41
 Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 14/225 (6%)

Query: 129 SLIWLDLSNNNFD---GQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN 185
            +  +DLS+   +     +  + ++LT L+ L+L N+H +G +  G   S  L  LD+S 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSR 109

Query: 186 NRLSGHIPS--WMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMIS 242
           N LSG + +   +G+ S L+ L++S N L+    V     L  LE+L++S N++SG+ + 
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 243 TL----NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLR 298
                     ++HL +  N + G +     R   LE LD+  NNFS  IP  + + S L+
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 226

Query: 299 ALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343
            L +  N L G     +    +L ++++S N+  G IP     SL
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (348), Expect = 3e-34
 Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 34/265 (12%)

Query: 245 NLSSVEHLYLQNNAL---GGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
               V  + L +  L     ++ ++    + LE+L L +++ +G +       ++L +L 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 302 LRANYLQGPIP--HQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEG 359
           L  N L GP+     L     L  +++S N L           L       SL  LD   
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL------NSLEVLD--- 157

Query: 360 ADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI----LEHMAGL 415
             +    I         L     +L+ L        ++ N+     G +      ++  L
Sbjct: 158 --LSANSISGANVVGWVLSDGCGELKHLA-------ISGNKIS---GDVDVSRCVNLEFL 205

Query: 416 DLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475
           D+SSN  +  IP  +GD   +  L++S N LSG    + S    ++ L++S N+  G IP
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 476 PQLTELHSLSKFDVSYNNLSGPIPD 500
           P    L SL    ++ N  +G IPD
Sbjct: 265 PLP--LKSLQYLSLAENKFTGEIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (283), Expect = 3e-26
 Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 13/174 (7%)

Query: 174 RSTELMVLDISNNRLS---GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILN 230
           R  ++  +D+S+  L+     + S + + + L+ L +S + + G++   F     L  L+
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 231 ISENNLSGSMISTL---NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGR 286
           +S N+LSG + +     + S ++ L + +N L      +     ++LE LDL  N+ SG 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 287 IPHQINEHSN---LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA 337
                        L+ L +  N + G +   + R   L  +D+S N     IP 
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF 218

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 432 DLQNIHGLNLSYNFLS---GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 488
               +  ++LS   L+    ++  S  +L  +ESL LS++ +NG +        SL+  D
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 489 VSYNNLSGPIPDKEQFS 505
           +S N+LSGP+       
Sbjct: 107 LSRNSLSGPVTTLTSLG 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  221 bits (566), Expect = 4e-64
 Identities = 107/538 (19%), Positives = 184/538 (34%), Gaps = 61/538 (11%)

Query: 8   NLKYLDLSHNKLAGNFPTWL-LENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKN 64
           NL+ L LS+NK+       L +  N+ L+ L L +N    F      A   L  L ++  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 65  SFTGELPQNMGIVLQ--KLVYMNISKNSFEGNIPSSIAKMQG--LRFLDVSTNNFAGELS 120
                L + + + L    +  +++S +       ++   ++   L  LD+S NN     +
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS----- 175
            S       L +  L  NN       +   L  ++ L L  +     I    L       
Sbjct: 266 DSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 176 ----TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN--IPVQFNDL--LDLE 227
                 L  L++ +N + G   +       L+ LS+S +           F  L    L 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 228 ILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSG 285
           ILN+++N +S         L  +E L L  N +G  +    +RG   +  + L  N +  
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 286 RIPHQINEHSNLRALLLRANYLQG--PIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343
              +      +L+ L+LR   L+     P     LR L I+DLS+N +       +    
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL- 503

Query: 344 FWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYES 403
                 E L  LD                      L  ++L  L K              
Sbjct: 504 ------EKLEILD----------------------LQHNNLARLWKH------ANPGGPI 529

Query: 404 YKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESL 463
           Y    L H+  L+L SN           DL  +  ++L  N L+      F+N   ++SL
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 464 DLSHNKLNGQIPPQL-TELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCG 520
           +L  N +             +L++ D+ +N           F  +   ++     L  
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  209 bits (535), Expect = 9e-60
 Identities = 109/516 (21%), Positives = 187/516 (36%), Gaps = 45/516 (8%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS 65
           + +  D SH KL    P  L  N   + VL L +N               L SLD+  N+
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
            +   P+     L  L  +N+  N        + A    L  L + +N+     +     
Sbjct: 61  ISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF-V 118

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDI 183
              +LI LDLS+N          + L  LQ L L NN       +   +  ++ L  L++
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQF---NDLLDLEILNISENNLSG-- 238
           S+N++    P        L  L ++   L  ++  +         +  L++S + LS   
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 239 -SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNL 297
            +    L  +++  L L  N L     ++F     LE   L  NN      H ++   N+
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 298 RALLLRANY---------LQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVG 348
           R L L+ ++         L          L+ L  +++  N + G      T        
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------- 351

Query: 349 NESLYQLDEEGADVGNVDI-RDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407
             +L  L    +      +  + + S     L   +L         N ++K   +++   
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-------NKISKIESDAFSW- 403

Query: 408 ILEHMAGLDLSSNELTGNIP-SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLS 466
            L H+  LDL  NE+   +   E   L+NI  + LSYN        SF+ +  ++ L L 
Sbjct: 404 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 467 HNKLNG--QIPPQLTELHSLSKFDVSYNNLSGPIPD 500
              L      P     L +L+  D+S NN++    D
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (509), Expect = 4e-56
 Identities = 103/529 (19%), Positives = 183/529 (34%), Gaps = 84/529 (15%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ--LTGAQHGLLSLDISKNS 65
            LK L+L HN+L+           T L  L+L++NS    +      Q  L++LD+S N 
Sbjct: 74  MLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQG--LRFLDVSTNNFAGELSQSL 123
            +        + L+ L  + +S N  +      +       L+ L++S+N          
Sbjct: 133 LSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 124 VTNCFSLIWLDLSNNNFDGQI---FPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTEL 178
                 L  L L+N      +       +  T ++ L L N+  S         L+ T L
Sbjct: 192 -HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 179 MVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN---- 234
            +LD+S N L+            L+   +  N ++       + L ++  LN+  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 235 NLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIP 288
           ++S + +  +       L  +EHL +++N + G   N F     L+ L L ++  S R  
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 289 HQIN----EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLF 344
                    HS L  L L  N +          L  L ++DL  N +       +T   +
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE----LTGQEW 426

Query: 345 WKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESY 404
              G E+++++                                        ++ N+Y   
Sbjct: 427 R--GLENIFEIY---------------------------------------LSYNKYLQL 445

Query: 405 KGVILEHMAGL---DLSSNELTG--NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKM 459
                  +  L    L    L    + PS    L+N+  L+LS N ++    +    L+ 
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 460 IESLDLSHNKLN--------GQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
           +E LDL HN L         G     L  L  L   ++  N       +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  184 bits (470), Expect = 9e-51
 Identities = 84/459 (18%), Positives = 164/459 (35%), Gaps = 51/459 (11%)

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
               D S    T ++P +   +   +  +N++ N       ++  +   L  LDV  N  
Sbjct: 6   HEVADCSHLKLT-QVPDD---LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
           +    +        L  L+L +N         +   T L  L+L +N       +  ++ 
Sbjct: 62  SKLEPELC-QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDL--LDLEILNISE 233
             L+ LD+S+N LS            LQ L +S N ++     + +      L+ L +S 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 234 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFF---RGSALETLDLRDNNFSGRIPH 289
           N +          +  +  L+L N  LG S+          +++  L L ++  S     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 290 QIN--EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347
                + +NL  L L  N L          L +L    L +N +       +        
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL----- 295

Query: 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407
              ++  L+ +     +   +    +++  ++D+   +WL                    
Sbjct: 296 --FNVRYLNLKR----SFTKQSISLASLP-KIDDFSFQWLKC------------------ 330

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS--IPESFSNLKM--IESL 463
            LEH   L++  N++ G   +    L N+  L+LS +F S      E+F +L    +  L
Sbjct: 331 -LEH---LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 464 DLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKE 502
           +L+ NK++       + L  L   D+  N +   +  +E
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (437), Expect = 3e-46
 Identities = 73/369 (19%), Positives = 138/369 (37%), Gaps = 31/369 (8%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLE--NNTKLEVLYLINNSFSGFQ---LTGAQH-GL 56
                 L  L L++ +L  +    L     NT +  L L N+  S        G +   L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 57  LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFA 116
             LD+S N+       +    L +L Y  +  N+ +     S+  +  +R+L++  +   
Sbjct: 251 TMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 117 GELSQSLVT--------NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI 168
             +S + +             L  L++ +N+  G     +  L  L+ L L N+  S + 
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 169 KDGL----LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDL 223
                   L  + L +L+++ N++S           +L++L +  N +   +  Q +  L
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 224 LDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGG--SIPNTFFRGSALETLDLRD 280
            ++  + +S N       ++   + S++ L L+  AL    S P+ F     L  LDL +
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 281 NNFSGRIPHQINEHSNLRALLLRANYLQ--------GPIPHQLCRLRKLGIMDLSHNRLY 332
           NN +      +     L  L L+ N L         G   + L  L  L I++L  N   
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 333 GSIPACITN 341
                   +
Sbjct: 550 EIPVEVFKD 558

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  163 bits (415), Expect = 2e-43
 Identities = 84/422 (19%), Positives = 142/422 (33%), Gaps = 60/422 (14%)

Query: 105 LRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHF 164
               D S      ++   L TN   +  L+L++N        N+   +QL  L +  N  
Sbjct: 6   HEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 165 SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLL 224
           S    +   +   L VL++ +N LS          + L  L +  N ++      F    
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 225 DLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTF--FRGSALETLDLRDN 281
           +L  L++S N LS + + T   L +++ L L NN +          F  S+L+ L+L  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 282 NFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC---RLRKLGIMDLSHNRLYGSIPAC 338
                 P   +    L  L L    L   +  +LC       +  + LS+++L  +    
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 339 ITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTK 398
                                                   L  ++L  L   +  N +  
Sbjct: 242 FLG-------------------------------------LKWTNLTML--DLSYNNLNV 262

Query: 399 NRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI-------- 450
              +S+    L  +    L  N +       +  L N+  LNL  +F   SI        
Sbjct: 263 VGNDSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320

Query: 451 -PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDE 509
              SF  LK +E L++  N + G      T L +L    +S +  S      E F +   
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 510 SS 511
           S 
Sbjct: 381 SP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (375), Expect = 5e-38
 Identities = 67/307 (21%), Positives = 116/307 (37%), Gaps = 22/307 (7%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTG------AQHGL 56
            +    L++L++  N + G   + +      L+ L L N+  S   LT       A   L
Sbjct: 325 FQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 57  LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP-SSIAKMQGLRFLDVSTNNF 115
             L+++KN  +          L  L  +++  N     +       ++ +  + +S N +
Sbjct: 384 HILNLTKNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDG--QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLL 173
                 S      SL  L L              +  L  L +L L NN+ +    D L 
Sbjct: 443 LQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 174 RSTELMVLDISNNRLS--------GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD 225
              +L +LD+ +N L+        G    ++   S+L IL++  N  +      F DL +
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 226 LEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNF 283
           L+I+++  NNL+    S   N  S++ L LQ N +       F      L  LD+R N F
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

Query: 284 SGRIPHQ 290
                  
Sbjct: 622 DCTCESI 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (335), Expect = 8e-33
 Identities = 62/292 (21%), Positives = 113/292 (38%), Gaps = 25/292 (8%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL---DISKN 64
            L  L+L+ NK++             LEVL L  N            GL ++    +S N
Sbjct: 382 PLHILNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEG--NIPSSIAKMQGLRFLDVSTNNFAGELSQS 122
            +   L +N   ++  L  + + + + +   + PS    ++ L  LD+S NN A  ++  
Sbjct: 441 KYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDD 498

Query: 123 LVTNCFSLIWLDLSNNN--------FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR 174
           ++     L  LDL +NN          G        L+ L +L L++N F     +    
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD-LEILNISE 233
             EL ++D+  N L+    S   N   L+ L++ KNL+       F      L  L++  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 234 NNLSGS------MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 279
           N    +       ++ +N +      L ++ L  + P+  + G  +   D  
Sbjct: 619 NPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH--YHGFPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 17/176 (9%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHG------ 55
             +   NL  LDLS+N +A      +LE   KLE+L L +N+ +         G      
Sbjct: 475 PFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 56  ----LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVS 111
               L  L++  N F   +P  +   L +L  +++  N+      S       L+ L++ 
Sbjct: 534 GLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 112 TNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQI-----FPNYMNLTQLQLLYLDNN 162
            N       +       +L  LD+  N FD        F N++N T   +  L ++
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (534), Expect = 5e-60
 Identities = 79/543 (14%), Positives = 160/543 (29%), Gaps = 93/543 (17%)

Query: 8   NLKYLDLSHNKLAGNFPTWL---LENNTKLEVLYLINNSFSGFQLTGAQHG----LLSLD 60
            L+ L L  +    N   +    +  N   E    +   +    +          L+   
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
           I+ +     + ++  I L K   +    N+    +  ++ ++  LR   +  + F  E  
Sbjct: 166 INSDPQQKSIKKSSRITL-KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 121 QSLVT------------------NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNN 162
                                  N   L  +++ N     ++      L ++QL+ +  N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 163 HF--------SGKIKDGLLRSTELMVLDISNNRL-SGHIPSWMGNFSYLQILSMSKNLLE 213
                       +         ++ ++ I  N L +  + + +     L +L    N LE
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 214 GNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGS- 271
           G +P  F   + L  LN++ N ++    +       VE+L   +N L   IPN F   S 
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401

Query: 272 -ALETLDLRDNNFSG-------RIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGI 323
             +  +D   N            +     +  N+ ++ L  N +             L  
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 324 MDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD 383
           ++L  N L   IP            N   Y L                     + L  + 
Sbjct: 462 INLMGNML-TEIPKNSLKDENENFKN--TYLL-------------------TSIDLRFNK 499

Query: 384 LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNI------H 437
           L  L        +            L     +DLS N  +   P++  +   +      +
Sbjct: 500 LTKLSDDFRATTLPY----------LVG---IDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

Query: 438 GLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGP 497
             +   N      PE  +    +  L +  N +   +  ++    ++S  D+  N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602

Query: 498 IPD 500
              
Sbjct: 603 DLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  198 bits (506), Expect = 6e-56
 Identities = 72/525 (13%), Positives = 156/525 (29%), Gaps = 78/525 (14%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT------GAQHGLLSLDI 61
            +  L L     +G  P   +   T+LEVL L ++     +         A         
Sbjct: 82  RVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 62  SKNSFTGELPQNMG-IVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
            +  +               L+   I+ +  + +I  S         +   +NN    +S
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVS 199

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
           +++      L    + N+ F  +           +    +                +L  
Sbjct: 200 KAV-MRLTKLRQFYMGNSPFVAEN-----ICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLL--------EGNIPVQFNDLLDLEILNIS 232
           +++ N      +P+++     +Q+++++ N          +            ++I+ I 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 233 ENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQ 290
            NNL    + T    +  +  L    N L G +P  F     L +L+L  N  +    + 
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANF 372

Query: 291 INEHSNLRALLLRANYLQG-PIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN 349
                 +  L    N L+  P       +  +  +D S+N +                  
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL 409
            ++  ++                      L              N ++K   E +     
Sbjct: 433 INVSSIN----------------------LSN------------NQISKFPKELFST--G 456

Query: 410 EHMAGLDLSSNELTG-------NIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIE 461
             ++ ++L  N LT        +      +   +  ++L +N L+    +   + L  + 
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 462 SLDLSHNKLNGQIPPQLTELHSLSKF------DVSYNNLSGPIPD 500
            +DLS+N  +   P Q     +L  F      D   N      P+
Sbjct: 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (445), Expect = 1e-47
 Identities = 60/478 (12%), Positives = 145/478 (30%), Gaps = 93/478 (19%)

Query: 78  LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL---VTNCFSLIWLD 134
             ++  +++      G +P +I ++  L  L + ++             ++   S     
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 135 LSNNNFDGQIFPNYMNLTQLQLLYLD--NNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
               ++               L+     ++     IK     + +   +   +N ++  +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198

Query: 193 PSWMGNFSYLQILSMSKNLLEG-------------------NIPVQFNDLLDLEILNISE 233
              +   + L+   M  +                          +++++L DL  + +  
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 234 NNLSGSMISTL-NLSSVEHLYLQNNAL--------GGSIPNTFFRGSALETLDLRDNNF- 283
                 + + L  L  ++ + +  N                    G  ++ + +  NN  
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 284 SGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343
           +  +   + +   L  L    N L+G +P       KL  ++L++N++   IPA      
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI-TEIPANFCGF- 375

Query: 344 FWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYES 403
                     Q++                    L    + L+++    +   ++      
Sbjct: 376 --------TEQVEN-------------------LSFAHNKLKYIPNIFDAKSVSVMSA-- 406

Query: 404 YKGVILEHMAGLDLSSNELTG-------NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSN 456
                      +D S NE+          +        N+  +NLS N +S    E FS 
Sbjct: 407 -----------IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 457 LKMIESLDLSHNKLNG-------QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTF 507
              + S++L  N L                  + L+  D+ +N L+  + D  + +T 
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (413), Expect = 3e-43
 Identities = 55/376 (14%), Positives = 125/376 (33%), Gaps = 47/376 (12%)

Query: 1   KFLRHQFNLKYLDLSHNKLAGNFPTW----LLENNTKLEVLYLINNSFSG-----FQLTG 51
            F+ +     + DL  + +  +              K   +  ++N+ +       +LT 
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT- 206

Query: 52  AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVS 111
               L    +  + F  E               N                ++ L  ++V 
Sbjct: 207 ---KLRQFYMGNSPFVAENICEAWENE------NSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 112 TNNFAGELSQSLVTNCFSLIWLDLSNNNF--------DGQIFPNYMNLTQLQLLYLDNNH 163
                 +L   L      +  ++++ N          D Q   +     ++Q++Y+  N+
Sbjct: 258 NCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 164 F-SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFND 222
             +  ++  L +  +L +L+   N+L G +P+  G+   L  L+++ N +          
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGF 375

Query: 223 LLDLEILNISENNLSG--SMISTLNLSSVEHLYLQNNALGG-------SIPNTFFRGSAL 273
              +E L+ + N L    ++    ++S +  +    N +G         +  T F+G  +
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQG-------PIPHQLCRLRKLGIMDL 326
            +++L +N  S       +  S L ++ L  N L                    L  +DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 327 SHNRLYGSIPACITNS 342
             N+L   +      +
Sbjct: 496 RFNKL-TKLSDDFRAT 510

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (412), Expect = 5e-43
 Identities = 56/367 (15%), Positives = 115/367 (31%), Gaps = 35/367 (9%)

Query: 1   KFLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLD 60
           K  R       +    N +        +   TKL   Y+ N+ F    +        + +
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAENICE---AWENEN 231

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
                            L+ L  + +        +P+ +  +  ++ ++V+ N       
Sbjct: 232 SEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 121 QSL-------VTNCFSLIWLDLSNNNF-DGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL 172
                           +  + +  NN     +  +   + +L +L    N   GK+    
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAF 349

Query: 173 LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIP--VQFNDLLDLEILN 230
               +L  L+++ N+++    ++ G    ++ LS + N L+  IP       +  +  ++
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAID 408

Query: 231 ISENNLSGSMISTL--------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNN 282
            S N +                   +V  + L NN +       F  GS L +++L  N 
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 283 FSG-------RIPHQINEHSNLRALLLRANYLQG-PIPHQLCRLRKLGIMDLSHNRLYGS 334
            +                   L ++ LR N L       +   L  L  +DLS+N     
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SK 527

Query: 335 IPACITN 341
            P    N
Sbjct: 528 FPTQPLN 534

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  149 bits (378), Expect = 1e-38
 Identities = 56/369 (15%), Positives = 120/369 (32%), Gaps = 41/369 (11%)

Query: 8   NLKYLDLSHNKLAGNFPTWL-------LENNTKLEVLYLINNSFSGFQLT---GAQHGLL 57
            ++ ++++ N+                     K++++Y+  N+   F +         L 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 58  SLDISKNSFTGELP--QNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
            L+   N   G+LP   +      KL  +N++ N       +     + +  L  + N  
Sbjct: 334 MLECLYNQLEGKLPAFGS----EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDG-------QIFPNYMNLTQLQLLYLDNNHFSGKI 168
               +     +   +  +D S N            + P       +  + L NN  S   
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 169 KDGLLRSTELMVLDISNNRLSG-------HIPSWMGNFSYLQILSMSKNLLEGNIP-VQF 220
           K+     + L  +++  N L+               N   L  + +  N L       + 
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 221 NDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQN------NALGGSIPNTFFRGSALE 274
             L  L  +++S N+ S      LN S+++   ++N      N      P       +L 
Sbjct: 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 275 TLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334
            L +  N+    +  +I    N+  L ++ N         +C   + G+  L +++    
Sbjct: 570 QLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT-QD 625

Query: 335 IPACITNSL 343
           I  C    +
Sbjct: 626 IRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  147 bits (373), Expect = 7e-38
 Identities = 58/384 (15%), Positives = 122/384 (31%), Gaps = 51/384 (13%)

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG----KIKDGLLRSTELMVL 181
           +   +  L L      G++      LT+L++L L ++            G+  +      
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 182 DISNNRLSGHIPSWMG--NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS 239
                        +    +FS L    ++ +  + +I       L    +    NN++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 240 MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA 299
             + + L+ +   Y+ N+              A E  +            + +   +L  
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 300 LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL-YGSIPACITNSLFWKVGNESLYQLDEE 358
           + +        +P  L  L ++ +++++ NR   G        +L      E +  +   
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY-- 311

Query: 359 GADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS 418
                               +  ++L+    +  +  M K          L     L+  
Sbjct: 312 --------------------IGYNNLKTFPVETSLQKMKK----------LGM---LECL 338

Query: 419 SNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP-- 476
            N+L G +P   G    +  LNL+YN ++          + +E+L  +HNKL   IP   
Sbjct: 339 YNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIF 396

Query: 477 QLTELHSLSKFDVSYNNLSGPIPD 500
               +  +S  D SYN +      
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (316), Expect = 2e-30
 Identities = 43/383 (11%), Positives = 105/383 (27%), Gaps = 93/383 (24%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
           L+  N +  G       N    +    + + +  +    L  +  +  L +     SG +
Sbjct: 42  LNGKNWSQQGFGTQPGANWNFNK----ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV 97

Query: 193 PSWMGNFSYLQILSMSKNLLEGN----IPVQFNDLLDLEILNISENNLSGSMISTL---N 245
           P  +G  + L++L++  +  + N     P   +  +  E       +   + +      +
Sbjct: 98  PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157

Query: 246 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305
            S +    + ++    SI  +         +    NN +                     
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-------------------- 197

Query: 306 YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNV 365
                +   + RL KL    + ++            +      +E   Q   E     N 
Sbjct: 198 -----VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE----NSEYAQQYKTEDLKWDN- 247

Query: 366 DIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGN 425
                                                      L+ +  +++ +      
Sbjct: 248 -------------------------------------------LKDLTDVEVYNCPNLTK 264

Query: 426 IPSEIGDLQNIHGLNLSYNFL--------SGSIPESFSNLKMIESLDLSHNKL-NGQIPP 476
           +P+ +  L  +  +N++ N                     + I+ + + +N L    +  
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 477 QLTELHSLSKFDVSYNNLSGPIP 499
            L ++  L   +  YN L G +P
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  124 bits (313), Expect = 4e-30
 Identities = 33/288 (11%), Positives = 82/288 (28%), Gaps = 37/288 (12%)

Query: 85  NISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQ- 143
           N   + +      S+     +  L +     +G +  ++      L  L L ++      
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNE 121

Query: 144 ---IFPNYMNLTQLQLLYLDNNHFSGKI--KDGLLRSTELMVLDISNNRLSGHIPSWMGN 198
                         +       H+       D     ++L+   I+++     I      
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 199 FSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-------------- 244
                 +    N +   +      L  L    +  +      I                 
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 245 ------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNF--------SGRIPHQ 290
                 NL  +  + + N      +P        ++ +++  N            +    
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 291 INEHSNLRALLLRANYLQ-GPIPHQLCRLRKLGIMDLSHNRLYGSIPA 337
                 ++ + +  N L+  P+   L +++KLG+++  +N+L G +PA
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 33/273 (12%), Positives = 78/273 (28%), Gaps = 35/273 (12%)

Query: 273 LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP----IPHQLCRLRKLGIMDLSH 328
           +  L L     SGR+P  I + + L  L L ++  +       P  +             
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 329 NRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLV 388
                +         F  +  + +    ++ +       +    +    ++ +       
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS-----IKKSSRITLKDTQIGQLSNNITF 197

Query: 389 KQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG 448
               V  +TK          L       + ++        E  +       N  Y     
Sbjct: 198 VSKAVMRLTK----------LRQ---FYMGNSPFVAENICEAWEN-----ENSEYAQQYK 239

Query: 449 SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFD 508
           +    + NLK +  +++ +     ++P  L  L  +   +V+ N        K+ +    
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 509 ESSYRGNL--------HLCGPPINKSCTNLPKL 533
           ++     +        +L   P+  S   + KL
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 3/81 (3%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
            D   N      P  I    ++  L +  N +     +   N+     LD+  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISID 603

Query: 475 PPQLTELHSLSKFDVSYNNLS 495
              +        + + Y+   
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 7/123 (5%)

Query: 416 DLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ-- 473
           +   +         +     + GL+L     SG +P++   L  +E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 474 --IPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLP 531
              P  ++   S  +      +      D +    F +        +   P  KS     
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK---DCINSDPQQKSIKKSS 179

Query: 532 KLL 534
           ++ 
Sbjct: 180 RIT 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  195 bits (497), Expect = 5e-55
 Identities = 83/512 (16%), Positives = 159/512 (31%), Gaps = 72/512 (14%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL---DISKN 64
           +L+ L      LA       + +   L+ L + +N    F+L      L +L   D+S N
Sbjct: 101 SLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 65  SFTGELPQNMGIVLQKL----VYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
                   ++  VL ++    + +++S N      P +  +++ L  L +  N  +  + 
Sbjct: 160 KIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVM 217

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQ------IFPNYMNLTQLQLLYLD---NNHFSGKIKDG 171
           ++ +     L    L    F  +             L  L +        +++   I D 
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 172 LLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNI 231
               T +    + +  +              Q L +          ++   L  L   + 
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 232 SENNLSGSMISTLNLSSVEHLYLQNNALG--GSIPNTFFRGSALETLDLRDNNFSGRIPH 289
              N      S ++L S+E L L  N L   G    + F  ++L+ LDL  N     +  
Sbjct: 336 KGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 290 QINEHSNLRALLLRANYLQGPIPHQ-LCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVG 348
                  L  L  + + L+          LR L  +D+SH     +              
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------- 443

Query: 349 NESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI 408
             SL  L                       +  +  +          +            
Sbjct: 444 LSSLEVLK----------------------MAGNSFQENFLPDIFTELRN---------- 471

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           L     LDLS  +L    P+    L ++  LN+S+N         +  L  ++ LD S N
Sbjct: 472 LTF---LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 469 KLNGQIPPQLTEL-HSLSKFDVSYNNLSGPIP 499
            +      +L     SL+  +++ N+ +    
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (486), Expect = 2e-53
 Identities = 98/512 (19%), Positives = 173/512 (33%), Gaps = 47/512 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS 65
           + K LDLS N L     ++   +  +L+VL L        +     +   L +L ++ N 
Sbjct: 29  STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
                       L  L  +   + +        I  ++ L+ L+V+ N           +
Sbjct: 88  IQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL----LYLDNNHFSGKIKDGLLRSTELMVL 181
           N  +L  LDLS+N        +   L Q+ L    L L  N  +  I+ G  +   L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 182 DISNNRLSGHIPS-WMGNFSYLQILSMSKNLLEGNIPVQFNDL--------LDLEILNIS 232
            + NN  S ++    +   + L++  +          ++  D         L +E   ++
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 233 ENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQ 290
             +     I  L   L++V    L +  +      ++      + L+L +  F      Q
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFG-----Q 318

Query: 291 INEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
                      L     +G        L  L  +DLS N L  S   C + S F   G  
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDF---GTT 373

Query: 351 SLYQLDEEGADVGNVDIRDYYNSTVQ-LRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL 409
           SL  LD     V  +         ++ L    S+L+ + +      +    Y        
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-------- 425

Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI-PESFSNLKMIESLDLSHN 468
                LD+S              L ++  L ++ N    +  P+ F+ L+ +  LDLS  
Sbjct: 426 -----LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
           +L    P     L SL   ++S+NN       
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  167 bits (425), Expect = 5e-45
 Identities = 85/509 (16%), Positives = 156/509 (30%), Gaps = 54/509 (10%)

Query: 13  DLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGEL 70
                      P  L  +    + L L  N           +   L  LD+S+       
Sbjct: 13  QCMELNFY-KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 71  PQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL 130
                  L  L  + ++ N  +     + + +  L+ L     N A   +  +  +  +L
Sbjct: 69  DGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTL 126

Query: 131 IWLDLSNNNFDGQIFPNYM-NLTQLQLLYLDNNHFSGKIKDGLLRSTEL----MVLDISN 185
             L++++N       P Y  NLT L+ L L +N         L    ++    + LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIP-VQFNDLLDLEILNISENNLSG----SM 240
           N ++   P        L  L++  N    N+       L  LE+  +             
Sbjct: 187 NPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 241 ISTLNLSSVEHLYLQNNAL------GGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH 294
                L  + +L ++   L         I + F   + + +  L             N  
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-- 303

Query: 295 SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFW-KVGNESLY 353
              + L L           +L  L++L     + N+   +       SL +  +    L 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA 413
                              S   L L  + +      +  NF+            LE + 
Sbjct: 361 FKGCCSQSDFG------TTSLKYLDLSFNGVI----TMSSNFLG-----------LEQLE 399

Query: 414 GLDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNG 472
            LD   + L       +   L+N+  L++S+     +    F+ L  +E L ++ N    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 473 QIPPQ-LTELHSLSKFDVSYNNLSGPIPD 500
              P   TEL +L+  D+S   L    P 
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  163 bits (414), Expect = 2e-43
 Identities = 66/367 (17%), Positives = 123/367 (33%), Gaps = 37/367 (10%)

Query: 5   HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF-QLTGAQHG-------- 55
            +  L  L L +N  + N     ++    LEV  L+   F     L              
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 56  -LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
            +    ++   +  +   ++   L  +   ++   + E     S     G + L++    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCK 315

Query: 115 FAGELSQSLVT------------------NCFSLIWLDLSNN--NFDGQIFPNYMNLTQL 154
           F    +  L +                  +  SL +LDLS N  +F G    +    T L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLE 213
           + L L  N     +    L   +L  LD  ++ L       +  +   L  L +S     
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 214 GNIPVQFNDLLDLEILNISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGS 271
                 FN L  LE+L ++ N+   + +  +   L ++  L L    L    P  F   S
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 272 ALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRL-RKLGIMDLSHNR 330
           +L+ L++  NNF           ++L+ L    N++      +L      L  ++L+ N 
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 331 LYGSIPA 337
              +   
Sbjct: 555 FACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  161 bits (409), Expect = 7e-43
 Identities = 74/373 (19%), Positives = 117/373 (31%), Gaps = 41/373 (10%)

Query: 6   QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGL-----LSLD 60
                 LDLS N +    P        +L  L L NN  S   +     GL       L 
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNS------FEGNIPSSIAKMQGLRFLDVSTNN 114
           + +    G L +     L+ L  + I +        +  +I      +  +    + +  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 115 FAGELSQSLVTNCFSLIWLDLSNNNF-------------------DGQIFPNYMNLTQLQ 155
                  S     F    L+L N  F                    G    + ++L  L+
Sbjct: 294 IERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350

Query: 156 LLYLDNNH--FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE 213
            L L  N   F G        +T L  LD+S N +   + S       L+ L    + L+
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 214 GNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG- 270
                  F  L +L  L+IS  +   +       LSS+E L +  N+   +     F   
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330
             L  LDL         P   N  S+L+ L +  N            L  L ++D S N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 331 LYGSIPACITNSL 343
           +  S    + +  
Sbjct: 530 IMTSKKQELQHFP 542

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  154 bits (392), Expect = 2e-40
 Identities = 71/316 (22%), Positives = 118/316 (37%), Gaps = 17/316 (5%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           N+    L    +           N   + L L+N  F  F  T     L  L  + N   
Sbjct: 283 NVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGG 338

Query: 68  GELPQNMGIVLQKLVYMNISKN--SFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
               +   + L  L ++++S+N  SF+G    S      L++LD+S N     +S +   
Sbjct: 339 NAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF-L 393

Query: 126 NCFSLIWLDLSNNNFDGQIFPNY-MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
               L  LD  ++N       +  ++L  L  L + + H            + L VL ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 185 NNRLSGHI-PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST 243
            N    +  P        L  L +S+  LE   P  FN L  L++LN+S NN        
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 244 L-NLSSVEHLYLQNNALGGSIPNTFFR-GSALETLDLRDNNFSGRIPHQ--INEHSNLRA 299
              L+S++ L    N +  S         S+L  L+L  N+F+    HQ  +    + R 
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

Query: 300 LLLRANYLQGPIPHQL 315
           LL+    ++   P   
Sbjct: 574 LLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  150 bits (382), Expect = 3e-39
 Identities = 83/504 (16%), Positives = 154/504 (30%), Gaps = 73/504 (14%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF-------------------- 47
            LK L+++HN +          N T LE L L +N                         
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 48  ---QLTGAQHG------LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNI--- 95
               +   Q G      L  L +  N  +  + +     L  L    +    F       
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 96  PSSIAKMQGLRFLDVSTN-----NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMN 150
               + ++GL  L +        ++  +    L     ++    L +   +     ++  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSY 302

Query: 151 LTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
               Q L L N  F       L     L                   +   L+ L +S+N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRN 357

Query: 211 LL--EGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFF 268
            L  +G           L+ L++S N +     + L L  +EHL  Q++ L      + F
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 269 RG-SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQ-LCRLRKLGIMDL 326
                L  LD+   +         N  S+L  L +  N  Q          LR L  +DL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 327 SHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNST--VQLRLDESDL 384
           S  +L    P    +         SL  L+    +  ++D   Y        L    + +
Sbjct: 478 SQCQLEQLSPTAFNSL-------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 385 RWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSE--IGDLQNIHGLNLS 442
               KQ   +F +   +             L+L+ N+       +  +  +++   L + 
Sbjct: 531 MTSKKQELQHFPSSLAF-------------LNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577

Query: 443 YNFLSGSIPESFSNLKMIESLDLS 466
              +  + P     + ++ SL+++
Sbjct: 578 VERMECATPSDKQGMPVL-SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.0 bits (216), Expect = 4e-18
 Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 9/167 (5%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLS--- 58
                 NL YLD+SH      F        + LEVL +  NSF    L      L +   
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 59  LDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGE 118
           LD+S+       P      L  L  +N+S N+F          +  L+ LD S N+    
Sbjct: 475 LDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 119 LSQSLVTNCFSLIWLDLSNNNFDG----QIFPNYMNLTQLQLLYLDN 161
             Q L     SL +L+L+ N+F      Q F  ++   +  L+ ++ 
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 2e-17
 Identities = 48/301 (15%), Positives = 91/301 (30%), Gaps = 41/301 (13%)

Query: 228 ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRI 287
                E N     I      S ++L L  N L      +FF    L+ LDL         
Sbjct: 11  TYQCMELNFYK--IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 288 PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347
                  S+L  L+L  N +Q         L  L  +      L       I +      
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH------ 122

Query: 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLR-----------LDESDLRWLVK------- 389
             ++L +L+     + +  + +Y+++   L            +  +DLR L +       
Sbjct: 123 -LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 390 -QVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD-------LQNIHGLNL 441
             + +N M   +  ++K + L     L L +N  + N+              + + G   
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHK---LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 442 SYNFLSGSIPESFSNLKMIESLDLSHNKLN---GQIPPQLTELHSLSKFDVSYNNLSGPI 498
           +   L      +   L  +   +     L+     I      L ++S F +    +    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 499 P 499
            
Sbjct: 299 D 299

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  187 bits (477), Expect = 8e-55
 Identities = 69/256 (26%), Positives = 112/256 (43%), Gaps = 4/256 (1%)

Query: 85  NISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL-VTNCFSLIWLDLSN-NNFDG 142
           +    ++ G +  +  +   +  LD+S  N          + N   L +L +   NN  G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYL 202
            I P    LTQL  LY+ + + SG I D L +   L+ LD S N LSG +P  + +   L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 203 QILSMSKNLLEGNIPVQFNDLLDL-EILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 261
             ++   N + G IP  +     L   + IS N L+G +  T    ++  + L  N L G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 262 SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKL 321
                F      + + L  N+ +  +  ++    NL  L LR N + G +P  L +L+ L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 322 GIMDLSHNRLYGSIPA 337
             +++S N L G IP 
Sbjct: 271 HSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  181 bits (461), Expect = 1e-52
 Identities = 69/253 (27%), Positives = 121/253 (47%), Gaps = 6/253 (2%)

Query: 56  LLSLDISKNSFTGELPQNMGI-VLQKLVYMNISK-NSFEGNIPSSIAKMQGLRFLDVSTN 113
           + +LD+S  +     P    +  L  L ++ I   N+  G IP +IAK+  L +L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 114 NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLL 173
           N +G +   L +   +L+ LD S N   G + P+  +L  L  +  D N  SG I D   
Sbjct: 112 NVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 174 RSTELM-VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNIS 232
             ++L   + IS NRL+G IP    N + L  + +S+N+LEG+  V F    + + ++++
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 233 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN 292
           +N+L+  +       ++  L L+NN + G++P    +   L +L++  NN  G IP Q  
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 293 EHSNLRALLLRAN 305
                       N
Sbjct: 289 NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (454), Expect = 1e-51
 Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 8/239 (3%)

Query: 108 LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQ--IFPNYMNLTQLQLLYL-DNNHF 164
            D     + G L  +  T  + +  LDLS  N      I  +  NL  L  LY+   N+ 
Sbjct: 31  TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 165 SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLL 224
            G I   + + T+L  L I++  +SG IP ++     L  L  S N L G +P   + L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 225 DLEILNISENNLSGSMISTL-NLSS-VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNN 282
           +L  +    N +SG++  +  + S     + +  N L G IP TF   + L  +DL  N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208

Query: 283 FSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN 341
             G          N + + L  N L   +  ++   + L  +DL +NR+YG++P  +T 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (384), Expect = 1e-41
 Identities = 54/209 (25%), Positives = 85/209 (40%), Gaps = 15/209 (7%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSG------FQLTGAQHGLLSLDI 61
            L YL ++H  ++G  P + L     L  L    N+ SG        L      L+ +  
Sbjct: 102 QLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLP----NLVGITF 156

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
             N  +G +P + G   +    M IS+N   G IP + A +  L F+D+S N   G+ S 
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
               +  +   + L+ N+    +         L  L L NN   G +  GL +   L  L
Sbjct: 216 LF-GSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 182 DISNNRLSGHIPSWMGNFSYLQILSMSKN 210
           ++S N L G IP   GN     + + + N
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (351), Expect = 6e-37
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           +DLS N L G+     G  +N   ++L+ N L+  +       K +  LDL +N++ G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260

Query: 475 PPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT 528
           P  LT+L  L   +VS+NNL G IP       FD S+Y  N  LCG P+  +CT
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (267), Expect = 1e-25
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           L  +  L ++   ++G IP  +  ++ +  L+ SYN LSG++P S S+L  +  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 469 KLNGQIPPQLTELHSLSKF-DVSYNNLSGPIPD 500
           +++G IP        L     +S N L+G IP 
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (263), Expect = 5e-25
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 409 LEHMAGLDLSS-NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
           L ++  L +   N L G IP  I  L  +H L +++  +SG+IP+  S +K + +LD S+
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 468 NKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
           N L+G +PP ++ L +L       N +SG IPD
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (261), Expect = 7e-25
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNL-KMIESLDLSH 467
           ++ +  LD S N L+G +P  I  L N+ G+    N +SG+IP+S+ +  K+  S+ +S 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 468 NKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
           N+L G+IPP    L +L+  D+S N L G    
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  100 bits (252), Expect = 1e-23
 Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 10/156 (6%)

Query: 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM-ISTL--NL 246
             + SW+                 G +         +  L++S  NL     I +   NL
Sbjct: 22  TTLSSWLPTTDC------CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL 75

Query: 247 SSVEHLYLQN-NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305
             +  LY+   N L G IP    + + L  L +   N SG IP  +++   L  L    N
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

Query: 306 YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN 341
            L G +P  +  L  L  +    NR+ G+IP    +
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS--IPESFSNLKMIESLDLSH-NKL 470
             D  +    G +         ++ L+LS   L     IP S +NL  +  L +   N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 471 NGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
            G IPP + +L  L    +++ N+SG IPD
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.5 bits (184), Expect = 9e-15
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 27/134 (20%)

Query: 6   QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNS 65
             NL ++DLS N L G+       ++   + ++L                      +KNS
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFG-SDKNTQKIHL----------------------AKNS 232

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
              +L +      + L  +++  N   G +P  + +++ L  L+VS NN  GE+ Q    
Sbjct: 233 LAFDLGKVGL--SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-- 288

Query: 126 NCFSLIWLDLSNNN 139
           N         +NN 
Sbjct: 289 NLQRFDVSAYANNK 302

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  182 bits (464), Expect = 2e-50
 Identities = 96/512 (18%), Positives = 174/512 (33%), Gaps = 61/512 (11%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLD 60
            + Q  L  L L+ N L        L     L+ L+ I    S         Q  L SL 
Sbjct: 77  FQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
           +  N  +  +    G   +KL  ++   N+        ++ +Q    L ++ N       
Sbjct: 136 LGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFP-----NYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
           +    +      L+         IF         +L       +D+   S  + +GL   
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
           + +  +++  +       +    FS LQ L ++   L   +P     L  L+ L +S N 
Sbjct: 255 S-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312

Query: 236 LSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNN--FSGRIPHQI 291
                  +  N  S+ HL ++ N     +          L  LDL  ++   S     Q+
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 292 NEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNES 351
              S+L++L L  N              +L ++DL+  RL          S F     ++
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA----QSPF-----QN 423

Query: 352 LYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEH 411
           L+ L                     L L              + +  +  + + G  L  
Sbjct: 424 LHLL-------------------KVLNLSH------------SLLDISSEQLFDG--LPA 450

Query: 412 MAGLDLSSNELTGNIPSEIG---DLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           +  L+L  N        +      L  +  L LS+  LS     +F++LKM+  +DLSHN
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
           +L       L+ L  +   +++ N++S  +P 
Sbjct: 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  179 bits (456), Expect = 2e-49
 Identities = 89/507 (17%), Positives = 160/507 (31%), Gaps = 36/507 (7%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS 65
           + + L+ S N L              L  L L              +QH L +L ++ N 
Sbjct: 34  STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
               + +      + L ++   +          +   + L  L + +N+ +  +      
Sbjct: 93  LIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGF 150

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH-FSGKIKDGLLRSTELMVLDIS 184
               L  LD  NN        +  +L Q   L L+ N      I+ G   S     L+  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 185 NNRLSGHIPSWMGN--FSYLQILSMSKNLLEGNIPVQFNDL--LDLEILNISENNLSGSM 240
             +    I   + N     L + +      E   P  F  L  + +E +N+ ++      
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 241 ISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA 299
            +T    S ++ L L    L   +P+     S L+ L L  N F        +   +L  
Sbjct: 271 SNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 300 LLLRANYLQGPI-PHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE 358
           L ++ N  +  +    L  L  L  +DLSH+ +                    L  L+  
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-----SDCCNLQLRNLSHLQSLNLS 384

Query: 359 GADVGNVDIRDYYNST--VQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLD 416
             +  ++    +        L L  + L+    Q     +   +              L+
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV-------------LN 431

Query: 417 LSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI---PESFSNLKMIESLDLSHNKLNGQ 473
           LS + L  +       L  +  LNL  N           S   L  +E L LS   L+  
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491

Query: 474 IPPQLTELHSLSKFDVSYNNLSGPIPD 500
                T L  ++  D+S+N L+    +
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIE 518

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  159 bits (405), Expect = 3e-42
 Identities = 97/528 (18%), Positives = 169/528 (32%), Gaps = 85/528 (16%)

Query: 10  KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGE 69
           K  +  +  L    P  L  +    E L    N                  I   +F+  
Sbjct: 15  KTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPT--------------IQNTTFSR- 55

Query: 70  LPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFS 129
                   L  L ++++++         +      L  L ++ N     ++++ ++   +
Sbjct: 56  --------LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKA 106

Query: 130 LIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS 189
           L  L           F    N   L+ LYL +NH S         + +L VLD  NN + 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 190 G-------------------------HIPSWMGNFSYLQILSMSKNLLEGNIP--VQFND 222
                                      I     + +  Q L+         I   ++ + 
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 223 LLDLEILNISENNL---SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 279
           +  L +    + +    S ++   L   SVE + LQ +       NTF   S L+ LDL 
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 280 DNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACI 339
             + S  +P  +   S L+ L+L AN  +            L  + +  N     +    
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 340 TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKN 399
             +L      E+L +LD              ++           LR L   ++   ++ N
Sbjct: 346 LENL------ENLRELDLS------------HDDIETSDCCNLQLRNL-SHLQSLNLSYN 386

Query: 400 RYESYKGVILEHMAGL---DLSSNELTGNIP-SEIGDLQNIHGLNLSYNFLSGSIPESFS 455
              S K    +    L   DL+   L      S   +L  +  LNLS++ L  S  + F 
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 456 NLKMIESLDLSHNKL---NGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
            L  ++ L+L  N     N Q    L  L  L    +S+ +LS     
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (387), Expect = 8e-40
 Identities = 104/508 (20%), Positives = 174/508 (34%), Gaps = 41/508 (8%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ---LTGAQH-GLL 57
            L +Q  L+ L L  N ++ +          KL+VL   NN+        ++  Q    L
Sbjct: 124 PLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 58  SLDISKNSFTG---ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
           SL+++ N   G       +                 F+G   S+I  +    F D+   +
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 115 FAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR 174
            +  + + L     S+  ++L  + F       +   + LQ L L   H S ++  GL+ 
Sbjct: 243 ISPAVFEGLCEM--SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISE 233
            + L  L +S N+          NF  L  LS+  N     +      +L +L  L++S 
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 234 NNLSGSMISTL---NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPH- 289
           +++  S    L   NLS ++ L L  N         F     LE LDL       +    
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 290 QINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN 349
                  L+ L L  + L          L  L  ++L  N           +        
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL----QTL 475

Query: 350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL 409
             L  L      +   D+           +D+     L     V+ ++ NR  S     L
Sbjct: 476 GRLEIL-----VLSFCDLSS---------IDQHAFTSLKMMNHVD-LSHNRLTSSSIEAL 520

Query: 410 EHMAG--LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
            H+ G  L+L+SN ++  +PS +  L     +NL  N L  +     SN+  +E    + 
Sbjct: 521 SHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKENM 576

Query: 468 NKLNGQIPPQLTELHSLSKFDVSYNNLS 495
            KL             L    +S   LS
Sbjct: 577 QKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  145 bits (369), Expect = 1e-37
 Identities = 59/383 (15%), Positives = 122/383 (31%), Gaps = 49/383 (12%)

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL 188
           S   L+ S N         +  L  L  L L         +D       L  L ++ N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 189 SGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLS 247
                + +     L+ L   +  +     +  ++   LE L +  N++S   +       
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 248 SVEHLYLQNNALGGSIPNTF--FRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305
            ++ L  QNNA+           + +   +L+L  N+ +G I     + +  ++L     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGT 212

Query: 306 YLQGPIPHQL--CRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
                I   L    ++ L +               I+ ++F  +   S+  ++ +     
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDED-----ISPAVFEGLCEMSVESINLQK---- 263

Query: 364 NVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT 423
                                         ++       ++       +  LDL++  L+
Sbjct: 264 ------------------------------HYFFNISSNTFHC--FSGLQELDLTATHLS 291

Query: 424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELH 482
             +PS +  L  +  L LS N        S SN   +  L +  N    ++    L  L 
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 483 SLSKFDVSYNNLSGPIPDKEQFS 505
           +L + D+S++++        Q  
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 33/262 (12%), Positives = 81/262 (30%), Gaps = 48/262 (18%)

Query: 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG 333
           +T +  +   +  IP  +   ++   L    N L         RL  L  +DL+  ++Y 
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEV 393
                  +           ++LD                    L L  + L ++ +    
Sbjct: 72  IHEDTFQS----------QHRLDT-------------------LVLTANPLIFMAETALS 102

Query: 394 NFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES 453
                           + +  L      ++      + + + +  L L  N +S      
Sbjct: 103 G--------------PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 454 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLS--KFDVSYNNLSGPIPDKEQFSTFDESS 511
               + ++ LD  +N ++      ++ L   +    +++ N+++G  P     + F   +
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 512 YRGNLHLCGPPINKSCTNLPKL 533
           + G  +L         + +  L
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSL 230

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  184 bits (468), Expect = 6e-50
 Identities = 78/573 (13%), Positives = 164/573 (28%), Gaps = 88/573 (15%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ--LTGAQHGLLSL 59
            L +   +  L L+     G  P   +   T+L+VL    +S +         +      
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 60  DISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGN------------------------- 94
           +  K+       +      Q+L   ++ +++   N                         
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 95  ---IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNL 151
              I  +I ++  L+ +  + + F                  +            ++ NL
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSG---------HIPSWMGNFSYL 202
             L  + L N     ++ D L    EL  L+I+ NR             +         +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 203 QILSMSKNLLEG-NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALG 260
           QI  M  N LE          ++ L +L+   N +    +        +  L L  N + 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIE 608

Query: 261 GSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEHS--NLRALLLRANYLQG-----PIP 312
             IP  F      +E L    N     IP+  N  S   + ++    N +          
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 313 HQLCRLRKLGIMDLSHNRLYGSIPACITN--SLFW-KVGNESLYQLDEEGADVGNVDIRD 369
               +      + LS+N +             +    + N  +  + E      + + ++
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 370 YYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSE 429
            Y  T  + L  + L  L        +            L +   +D+S N  +   P++
Sbjct: 727 TYLLTT-IDLRFNKLTSLSDDFRATTLPY----------LSN---MDVSYNCFSS-FPTQ 771

Query: 430 IGDLQNIHGLNLSY------NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 483
             +   +    + +      N +    P   +    +  L +  N +   +  +L     
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQ 828

Query: 484 LSKFDVSYNNL-SGPIPDKEQFSTFDESSYRGN 515
           L   D++ N   S  +     +          +
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  168 bits (427), Expect = 2e-44
 Identities = 73/524 (13%), Positives = 155/524 (29%), Gaps = 80/524 (15%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHG------ 55
           FL +   L   DL  + +  N     ++ ++++  L          ++T           
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS-LKDTQIGNLTNRITFISKAIQRLTK 449

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
           L  +  + + FT +               N        N   S + ++ L  +++     
Sbjct: 450 LQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDG---------QIFPNYMNLTQLQLLYLDNNHFSG 166
             +L   L  +   L  L+++ N             ++  +     ++Q+ Y+  N+   
Sbjct: 504 MTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 167 KIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD 225
                 L+   +L +LD  +N++  H+ +  G    L  L +  N +E            
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 226 LEILNISENNLSG--SMISTLNLSSVEHLYLQNNALGGSIPNTF-----FRGSALETLDL 278
           +E L  S N L    ++ +  ++  +  +    N +G    N       ++G    T+ L
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 279 RDNNFSGRIPHQINEHSNLRALLLRANYLQ-------GPIPHQLCRLRKLGIMDLSHNRL 331
             N             S +  ++L  N +         P          L  +DL  N+L
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 332 YGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQV 391
             S+      +         L  +D     V       +    +      S L+      
Sbjct: 741 -TSLSDDFRATTL-----PYLSNMD-----VSYNCFSSFPTQPLNS----SQLKAF---- 781

Query: 392 EVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIP 451
                            + H    D   N +    P+ I    ++  L +  N +     
Sbjct: 782 ----------------GIRHQ--RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

Query: 452 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           +    L     LD++ N         +        + + Y+   
Sbjct: 824 KLTPQL---YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  168 bits (426), Expect = 2e-44
 Identities = 90/534 (16%), Positives = 171/534 (32%), Gaps = 74/534 (13%)

Query: 21  GNFPTWLLENNTKLEVLYLINNSFSG------FQLTGAQHGLLSLDISKNSFTGELPQNM 74
           G+ P   L+NN ++  L L      G       QLT     L  L    +S T       
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT----ELKVLSFGTHSETVSGRLFG 367

Query: 75  GIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG--ELSQSLVTNCFSLIW 132
              L   +                +   Q L   D+  +      E+      +  SL  
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 133 LDLSN-NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS---------------- 175
             + N  N    I      LT+LQ++Y  N+ F+                          
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 176 ---TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG---------NIPVQFNDL 223
               +L  +++ N      +P ++ +   LQ L+++ N              +    +  
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 224 LDLEILNISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN 281
             ++I  +  NNL     S     +  +  L   +N +       F     L  L L  N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYN 605

Query: 282 NFSGRIPHQINEH-SNLRALLLRANYLQG-PIPHQLCRLRKLGIMDLSHNRLYGSIPACI 339
                IP         +  L    N L+  P       +  +G +D S+N++ GS    I
Sbjct: 606 QIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI-GSEGRNI 663

Query: 340 TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNST--VQLRLDESDLRWLVKQVEVNFMT 397
           + S+       +   +     ++       +   +    + L  + +  +          
Sbjct: 664 SCSMD-DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI---------P 713

Query: 398 KNRYESYKGVI--LEHMAGLDLSSNELTGNIPSEI--GDLQNIHGLNLSYNFLSGSIPES 453
           +N  +   G       +  +DL  N+LT  +  +     L  +  +++SYN  S S P  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQ 771

Query: 454 FSNLKMIESLDLSH------NKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
             N   +++  + H      N++  Q P  +T   SL +  +  N++   + +K
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (286), Expect = 1e-26
 Identities = 51/404 (12%), Positives = 121/404 (29%), Gaps = 58/404 (14%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
           LD  N  +      N ++         + + +  +    L  +  +  L ++     G +
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339

Query: 193 PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIS---------- 242
           P  +G  + L++LS   +    +  +  ++ L  ++    ++ +                
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 243 --------------TLNLSSVEHLYLQNNALGG------SIPNTFFRGSALETLDLRDNN 282
                            +     + L++  +G        I     R + L+ +   ++ 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 283 FSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS 342
           F+       N   +                     L+ L  ++L +      +P  + + 
Sbjct: 460 FTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD- 513

Query: 343 LFWKVGNESLYQLDEEGADVGN---VDIRDYYNSTVQLRLDESDLRWLVK-QVEVNFMTK 398
                    L +L  +  ++     +          +L  DE     +    +  N + +
Sbjct: 514 ---------LPEL--QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 399 NRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLK 458
               +     +  +  LD   N++        G    +  L L YN +     +  +   
Sbjct: 563 FPASASLQK-MVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

Query: 459 MIESLDLSHNKLNGQIPP--QLTELHSLSKFDVSYNNLSGPIPD 500
            +E L  SHNKL   IP       ++ +   D SYN +     +
Sbjct: 620 QVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  113 bits (283), Expect = 3e-26
 Identities = 46/281 (16%), Positives = 86/281 (30%), Gaps = 35/281 (12%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL---DISKN 64
            L  L L +N++    P        ++E L   +N             +  +   D S N
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 65  SFTGELPQNMGIVLQ-----KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF---- 115
                  +N+   +          + +S N  +       A    +  + +S N      
Sbjct: 655 KIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 116 --AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM---NLTQLQLLYLDNNHFSGKIKD 170
             + +       N + L  +DL  N        +      L  L  + +  N FS     
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKL--TSLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

Query: 171 GLLRSTELMVLDI------SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLL 224
             L S++L    I        NR+    P+ +     L  L +  N +   +  +     
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TP 827

Query: 225 DLEILNISENNLS----GSMISTLNLSSVEHLYLQNNALGG 261
            L IL+I++N        S+   +       LY +   + G
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 36/271 (13%), Positives = 85/271 (31%), Gaps = 45/271 (16%)

Query: 241 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRAL 300
           +   N   V  L L      G +P+   + + L+ L    ++ +       +E       
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 301 LLRANYLQGPIPH-QLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEG 359
             R + ++       L   ++L + DL  + +  +               E      +  
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--------------PEMKPIKKDSR 422

Query: 360 ADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSS 419
             + +  I +  N   ++      ++ L K                   L+    +  ++
Sbjct: 423 ISLKDTQIGNLTN---RITFISKAIQRLTK-------------------LQI---IYFAN 457

Query: 420 NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479
           +  T +  +   +       N  Y     +   S+SNLK +  ++L +     Q+P  L 
Sbjct: 458 SPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 480 ELHSLSKFDVSYNNLSGPIPDKEQFSTFDES 510
           +L  L   +++ N        K  ++   + 
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADD 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  168 bits (427), Expect = 2e-45
 Identities = 95/511 (18%), Positives = 159/511 (31%), Gaps = 70/511 (13%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS 65
           +L  L L+ N +   F        T LE L  +    +  +    G    L  L+++ N 
Sbjct: 81  HLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRF----LDVSTNNFAGELSQ 121
                       L  LV++++S N  +    + +  ++        LD+S N    +  Q
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFIQ 197

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGL-------- 172
                   L  L L  N     I      NL  L +  L    F  +    +        
Sbjct: 198 DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257

Query: 173 LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNIS 232
           L    +    ++               + +  +S++   ++    V        + L+I 
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSII 315

Query: 233 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS--GRIPHQ 290
              L      TL+L  ++ L L  N    SI        +L  LDL  N  S  G   + 
Sbjct: 316 RCQLKQ--FPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 291 INEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
               ++LR L L  N     +      L +L  +D  H+ L          SL      E
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL------E 424

Query: 351 SLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILE 410
            L  LD                                  +       +    + G  L 
Sbjct: 425 KLLYLD----------------------------------ISYTNTKIDFDGIFLG--LT 448

Query: 411 HMAGLDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK 469
            +  L ++ N    N  S +  +  N+  L+LS   L       F  L  ++ L++SHN 
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 470 LNGQIPPQLTELHSLSKFDVSYNNLSGPIPD 500
           L         +L+SLS  D S+N +      
Sbjct: 509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  165 bits (421), Expect = 2e-44
 Identities = 85/511 (16%), Positives = 163/511 (31%), Gaps = 70/511 (13%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS 65
           + K +DLS N L     ++   N ++L+ L L        +       H L +L ++ N 
Sbjct: 33  STKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
                       L  L  +   +          I ++  L+ L+V+ N        +  +
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL----LYLDNNHFSGKIKDGLLRSTELMVL 181
           N  +L+ +DLS N        +   L +       L +  N     I+D   +  +L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

Query: 182 DISNNRLSGHIPSW-MGNFSYLQILSMSKNLLEGNIPVQFND---LLDLEILNISENNLS 237
            +  N  S +I    + N + L +  +     +    ++  +   +  L  + I E  L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 238 GSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI 291
            +   +        L++V  + L   ++         +    ++L +            +
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 292 NEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNES 351
                L++L L  N  +G I  +   L  L  +DLS N L            +  +G  S
Sbjct: 328 ---PFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSF-----SGCCSYSDLGTNS 377

Query: 352 LYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEH 411
           L  LD                S     +  ++   L +                   L+H
Sbjct: 378 LRHLD---------------LSFNGAIIMSANFMGLEE-------------------LQH 403

Query: 412 MAGLDLSSNELTGNIP-SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL 470
              LD   + L      S    L+ +  L++SY          F  L  + +L ++ N  
Sbjct: 404 ---LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 471 NGQIPPQ-LTELHSLSKFDVSYNNLSGPIPD 500
                        +L+  D+S   L      
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  156 bits (396), Expect = 4e-41
 Identities = 84/487 (17%), Positives = 153/487 (31%), Gaps = 70/487 (14%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ------LTGAQHGL 56
           +     LK L+++HN +          N T L  + L  N            L       
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 57  LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPS-SIAKMQGLRFLDVSTNNF 115
           LSLD+S N       Q+      KL  + +  N    NI    +  + GL    +    F
Sbjct: 184 LSLDMSLNPIDFI--QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 116 AGELSQSLVTNCF-------SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI 168
             E +  +            ++    L+  N        +  L  +  + L         
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-- 299

Query: 169 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI 228
            + + +  +   L I   +L    P+   +  +L+ L+++ N    +I  +   L  L  
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKG--SISFKKVALPSLSY 354

Query: 229 LNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
           L++S N LS S   +   L  +S+ HL L  N     +   F     L+ LD + +    
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKR 413

Query: 286 RIPHQ-INEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLF 344
                       L  L +     +         L  L  + ++ N    +  + +  +  
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT- 472

Query: 345 WKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESY 404
                 +L  LD                      L +  L  +   V   F T       
Sbjct: 473 -----TNLTFLD----------------------LSKCQLEQISWGV---FDT------- 495

Query: 405 KGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLD 464
               L  +  L++S N L     S    L ++  L+ S+N +  S        K +   +
Sbjct: 496 ----LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 465 LSHNKLN 471
           L++N + 
Sbjct: 552 LTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  101 bits (254), Expect = 7e-23
 Identities = 56/344 (16%), Positives = 114/344 (33%), Gaps = 54/344 (15%)

Query: 173 LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNIS 232
           +     +     + +LS  +P  +   S  + + +S N L+      F++  +L+ L++S
Sbjct: 8   IEVVPNITYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS 64

Query: 233 ENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI 291
              +          L  + +L L  N +    P +F   ++LE L   +   +      I
Sbjct: 65  RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124

Query: 292 NEHSNLRALLLRANYLQG-PIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
            +   L+ L +  N++    +P     L  L  +DLS+N +  +I       L       
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQFLR------ 177

Query: 351 SLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILE 410
                                N  V L LD S           N +   + ++++G+ L 
Sbjct: 178 --------------------ENPQVNLSLDMSL----------NPIDFIQDQAFQGIKLH 207

Query: 411 HMAGLDLSSNELTGNIPSE-IGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESL------ 463
               L L  N  + NI    + +L  +H   L                 ++E L      
Sbjct: 208 E---LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 464 --DLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
              L++         +   L ++S   ++  ++       + F 
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  145 bits (368), Expect = 6e-37
 Identities = 119/596 (19%), Positives = 206/596 (34%), Gaps = 61/596 (10%)

Query: 3   LRHQFNLKYLDLSHNKLAGNF-PTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL-- 59
            +  F+L  L L    L+          N   L  L L  N      L  +   L SL  
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152

Query: 60  -DISKNSFTGELPQNM--GIVLQKLVYMNISKNSFEGNIPSSIAK-MQGLRFLDVSTNNF 115
            D S N     + ++    +  + L + +++ NS    +     K M   R + +   + 
Sbjct: 153 IDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL--L 173
           +G        N +++      +N        + +    +       ++     ++    L
Sbjct: 212 SG--------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 174 RSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233
             + +  LD+S+  +             L++L+++ N +       F  L +L++LN+S 
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 234 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN 292
           N L     S    L  V ++ LQ N +      TF     L+TLDLRDN  +      I+
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIH 378

Query: 293 EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL----YGSIPACITNSLFWKVG 348
              ++  + L  N L   +P        +    LS NRL           + +     + 
Sbjct: 379 FIPSIPDIFLSGNKLVT-LPKINLTANLI---HLSENRLENLDILYFLLRVPHLQILILN 434

Query: 349 NESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI 408
                    +     N  +        QL L E+ L+   +      + +          
Sbjct: 435 QNRFSSCSGDQTPSENPSLE-------QLFLGENMLQLAWETELCWDVFEG--------- 478

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           L H+  L L+ N L    P     L  + GL+L+ N L+            +E LD+S N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRN 536

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT 528
           +L     P +    SLS  D+++N          + STF       N+ + GPP +  C 
Sbjct: 537 QLL-APNPDV--FVSLSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIYCV 589

Query: 529 NLPKL----LEPSSKGAEDESAVDMVAFYWSFVASYVTLMLGLLAILWINPYWRRL 580
                    L   S    DE  V     +  F+   VTL L L+ IL +  +    
Sbjct: 590 YPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFC 645

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  142 bits (360), Expect = 6e-36
 Identities = 92/520 (17%), Positives = 163/520 (31%), Gaps = 59/520 (11%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL---DISKN 64
             + L LS N +             +L++L L +          A   L +L   D+  +
Sbjct: 25  TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNI--PSSIAKMQGLRFLDVSTNNFAGELSQS 122
                L  +    L  L  + +        +        ++ L  LD+S N         
Sbjct: 84  KIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 123 LVTNCFSLIWLDLSNNNF---DGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL------L 173
                 SL  +D S+N                T L    L  N    ++           
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 174 RSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233
           R+  L +LD+S N  +            + I     N +  +          +       
Sbjct: 202 RNMVLEILDVSGNGWT------------VDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 234 NNLSG---SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQ 290
           +N+     +  + L  SSV HL L +  +       F     L+ L+L  N  +      
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309

Query: 291 INEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
                NL+ L L  N L          L K+  +DL  N +   I       L      E
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFL------E 362

Query: 351 SLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD-----LRWLVKQVEVNFMTKNRYESYK 405
            L  L     D+ +  +   +       +  S      L  +     +  +++NR E+  
Sbjct: 363 KLQTL-----DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417

Query: 406 GVI----LEHMAGLDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSI-----PESFS 455
            +     + H+  L L+ N  +     +   +  ++  L L  N L  +       + F 
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 456 NLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
            L  ++ L L+HN LN   P   + L +L    ++ N L+
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  125 bits (316), Expect = 2e-30
 Identities = 77/376 (20%), Positives = 133/376 (35%), Gaps = 22/376 (5%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
                 N   Q+      L   + L L  N+             +L +L++ +      I
Sbjct: 9   AFYRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 193 PSWM-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL---NLSS 248
                 N   L+IL +  + +    P  F  L  L  L +    LS +++      NL +
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 249 VEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQIN--EHSNLRALLLRAN 305
           +  L L  N +     +  F   ++L+++D   N       H++   +   L    L AN
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 306 YLQGPIP------HQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEG 359
            L   +           R   L I+D+S N     I    +N++        +      G
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 360 ADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSS 419
           A  G  +I+D   +T    L  S +R L   +   F+       ++   L+ +  L+L+ 
Sbjct: 245 AGFGFHNIKDPDQNTFA-GLARSSVRHL--DLSHGFVFSLNSRVFET--LKDLKVLNLAY 299

Query: 420 NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 479
           N++          L N+  LNLSYN L      +F  L  +  +DL  N +         
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 480 ELHSLSKFDVSYNNLS 495
            L  L   D+  N L+
Sbjct: 360 FLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  112 bits (281), Expect = 5e-26
 Identities = 96/495 (19%), Positives = 162/495 (32%), Gaps = 88/495 (17%)

Query: 1   KFLRHQFNLKYLDLSHNKLAGNFPTWLLEN--NTKLEVLYLINNSFSGFQLTGAQHG--- 55
                  +LK +D S N++        LE      L    L  NS               
Sbjct: 142 PSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 56  -----LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDV 110
                L  LD+S N +T ++                  N+   +   S+     +     
Sbjct: 201 FRNMVLEILDVSGNGWTVDIT-------------GNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 111 STNNFAGELSQSLVTNCF--SLIWLDLSNNNF---DGQIFPNYMNLTQLQLLYLDNNHFS 165
             +N   +  Q+        S+  LDLS+      + ++F     L  L++L L  N  +
Sbjct: 248 GFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---TLKDLKVLNLAYNKIN 303

Query: 166 GKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLL 224
            KI D        L VL++S N L     S       +  + + KN +       F  L 
Sbjct: 304 -KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 225 DLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS 284
            L+ L++ +N L+    +   + S+  ++L  N L  ++P           + L +N   
Sbjct: 363 KLQTLDLRDNALT----TIHFIPSIPDIFLSGNKL-VTLPKINLT---ANLIHLSENRLE 414

Query: 285 G-RIPHQINEHSNLRALLLRANYLQGPIPHQLCR-LRKLGIMDLSHNRLYGSIPACITNS 342
              I + +    +L+ L+L  N        Q       L  + L  N L  +    +   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 343 LFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYE 402
           +F   G   L  L                       L+ + L  L   V  +        
Sbjct: 475 VF--EGLSHLQVLY----------------------LNHNYLNSLPPGVFSH-------- 502

Query: 403 SYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIES 462
                 L  + GL L+SN LT  +        N+  L++S N L    P+ F +L     
Sbjct: 503 ------LTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLS---V 551

Query: 463 LDLSHNKLNGQIPPQ 477
           LD++HNK   +    
Sbjct: 552 LDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 18/172 (10%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLS--- 58
           FL    +L+ L L+ N+ +          N  LE L+L  N       T     +     
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 59  ----LDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
               L ++ N     LP  +   L  L  ++++ N     +  +      L  LD+S N 
Sbjct: 481 HLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPAN-LEILDISRNQ 537

Query: 115 FAGELSQSLVTNCFSLIWLDLSNNNFDGQI----FPNYMNLTQLQLLYLDNN 162
               L         SL  LD+++N F  +     F N++N T + +     +
Sbjct: 538 ----LLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPAD 585

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (342), Expect = 4e-34
 Identities = 96/508 (18%), Positives = 174/508 (34%), Gaps = 49/508 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS 65
           + K LDLS N L  +  ++   +  +L+VL L        +     +   L +L ++ N 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
               L       L  L  +   + +        I  ++ L+ L+V+ N           +
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL----LYLDNNHFSGKIKDGLLRSTELMVL 181
           N  +L  LDLS+N        +   L Q+ L    L L  N  +  I+ G  +   L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKL 205

Query: 182 DISNNRLSGHIPS-WMGNFSYLQILSMSKNLLEGNIPVQFNDL--------LDLEILNIS 232
            + NN  S ++    +   + L++  +          ++  D         L +E   ++
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 233 ENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQ 290
             +     I  L   L++V    L +  +      ++  G   + L+L +  F       
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQ---FP 320

Query: 291 INEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
             +  +L+ L   +N            L  L  +DLS N L     +          G  
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGL-----SFKGCCSQSDFGTT 373

Query: 351 SLYQLDEEGADVGNV-DIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL 409
           SL  LD     V  +            L    S+L+ + +      +    Y        
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-------- 425

Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI-PESFSNLKMIESLDLSHN 468
                LD+S              L ++  L ++ N    +  P+ F+ L+ +  LDLS  
Sbjct: 426 -----LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 469 KLNGQIPPQ-LTELHSLSKFDVSYNNLS 495
           +L  Q+ P     L SL   +++ N L 
Sbjct: 481 QLE-QLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  135 bits (341), Expect = 6e-34
 Identities = 91/524 (17%), Positives = 175/524 (33%), Gaps = 71/524 (13%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLD 60
            +   +L  L L+ N +  +         + L+ L  +  + +  +    G    L  L+
Sbjct: 72  YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRF----LDVSTNNFA 116
           ++ N             L  L ++++S N  +    + +  +  +      LD+S N   
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM- 189

Query: 117 GELSQSLVTNCF---SLIWLDLSNNNFDGQIFPNYM-NLTQLQLLYL------DNNHFSG 166
                 +    F    L  L L NN     +    +  L  L++  L      +  +   
Sbjct: 190 ----NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 167 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDL 226
             K  L     L + +     L  ++   +  F+ L  +S S +L+   I    +   + 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS-SFSLVSVTIERVKDFSYNF 304

Query: 227 EILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN--NFS 284
              ++   N       TL L S++ L   +N  G +   +     +LE LDL  N  +F 
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK 362

Query: 285 GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLF 344
           G         ++L+ L L  N +   +      L +L  +D  H+ L       +  SL 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL- 420

Query: 345 WKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESY 404
                                                 +L +L   +            +
Sbjct: 421 -------------------------------------RNLIYL--DISHTHTRVAFNGIF 441

Query: 405 KGVILEHMAGLDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESL 463
            G  L  +  L ++ N    N   +I  +L+N+  L+LS   L    P +F++L  ++ L
Sbjct: 442 NG--LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 464 DLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTF 507
           +++ N+L          L SL K  +  N      P  +  S +
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 2e-31
 Identities = 77/395 (19%), Positives = 137/395 (34%), Gaps = 23/395 (5%)

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL 188
           S   LDLS N        ++ +  +LQ+L L                + L  L ++ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 189 SGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL--NL 246
                      S LQ L   +  L          L  L+ LN++ N +    +     NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALE----TLDLRDNNFSGRIPHQINEHSNLRALLL 302
           +++EHL L +N +             +     +LDL  N  +  I     +   L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 303 RANYLQGPIPHQLCR-LRKLGIMDLSHNRLYGSIP-ACITNSLFWKVGNESLYQLDEEGA 360
           R N+    +     + L  L +  L                S    + N ++ +      
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTK--------NRYESYKGVILEHM 412
           D    DI D +N    +         + +  + ++            ++  +  + L+ +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLS--GSIPESFSNLKMIESLDLSHNKL 470
             L  +SN+   N  SE+  L ++  L+LS N LS  G   +S      ++ LDLS N +
Sbjct: 328 KRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 471 NGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
              +      L  L   D  ++NL   + +   F 
Sbjct: 386 I-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFL 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 49/296 (16%)

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
            S ++L L  N L      +FF    L+ LDL                S+L  L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVD 366
           +Q         L  L  +      L       I +        ++L +L+     + +  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-------KTLKELNVAHNLIQSFK 140

Query: 367 IRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNI 426
           + +Y+++   L                                     LDLSSN++    
Sbjct: 141 LPEYFSNLTNLEH-----------------------------------LDLSSNKIQSIY 165

Query: 427 PSEIGDLQNIHG----LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTEL 481
            +++  L  +      L+LS N ++   P +F  ++ +  L L +N  +  +    +  L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGL 224

Query: 482 HSLSKFDVSYNNLSGPIPDKE-QFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEP 536
             L    +           ++   S  +              ++    ++  L   
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  128 bits (324), Expect = 7e-32
 Identities = 86/500 (17%), Positives = 178/500 (35%), Gaps = 78/500 (15%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHG---LLSLDISKN 64
           +L++LDLS N L+ +  +      + L+ L L+ N +    +T        L +L I   
Sbjct: 75  SLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
               E+ +     L  L  + I   S       S+  ++ +  L +  +  A  L +   
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFA 192

Query: 125 TNCFSLIWLDLSNNN---FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
               S+ +L+L + N   F     P     + ++ L    +  + +  + LL+    + L
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI-L 251

Query: 182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
           ++S             + +   +   + +  +    +   + + +  L+I +  L   + 
Sbjct: 252 ELSEVEFD--------DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 242 STL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQ---INEHSN 296
           +    L  V+ + ++N+ +   +P +F +   +LE LDL +N                 +
Sbjct: 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 297 LRALLLRANYLQ--GPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQ 354
           L+ L+L  N+L+        L  L+ L  +D+S N     +P                  
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWP------------ 409

Query: 355 LDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAG 414
                                        +R+L        ++       K  I + +  
Sbjct: 410 ---------------------------EKMRFL-------NLSSTGIRVVKTCIPQTLEV 435

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           LD+S+N L  +    +  LQ    L +S N L  ++P++ S   ++  + +S N+L    
Sbjct: 436 LDVSNNNLD-SFSLFLPRLQE---LYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVP 489

Query: 475 PPQLTELHSLSKFDVSYNNL 494
                 L SL K  +  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 7e-29
 Identities = 60/378 (15%), Positives = 130/378 (34%), Gaps = 14/378 (3%)

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN 185
           +C +    D  + +F   I         ++ L L  N  +      L     L VL + +
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL- 244
           +R++        +   L+ L +S N L       F  L  L+ LN+  N      +++L 
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 245 -NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEHSNLRALLL 302
            NL++++ L + N      I    F G ++L  L+++  +        +    ++  L L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 303 RANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDE--EGA 360
             +     +      L  +  ++L    L     + +          +  ++     + +
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSN 420
               + +  Y     ++  D+  L  L    + N    +       V    +  L +   
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLG---DFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 421 ELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ--- 477
            L  ++ +    L+ +  + +  + +         +LK +E LDLS N +  +       
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 478 LTELHSLSKFDVSYNNLS 495
                SL    +S N+L 
Sbjct: 357 KGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 8e-29
 Identities = 92/511 (18%), Positives = 166/511 (32%), Gaps = 74/511 (14%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            +K LDLS NK+        L     L+VL L ++  +               I  ++F 
Sbjct: 27  AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN--------------TIEGDAFY 71

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                     L  L ++++S N       S    +  L++L++  N +      SL  N 
Sbjct: 72  S---------LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 128 FSLIWLDLSNNNFDGQIFPNY-MNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISN 185
            +L  L + N     +I       LT L  L +         +   L+S  ++  L +  
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHL 181

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFN-----------DLLDLEILNISEN 234
           +  +  +  +    S ++ L +    L                          + + S N
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPN--------TFFRGSALETLDLRDNNFSGR 286
            L   +   L LS VE      N LG   P+               +  L +        
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 287 IPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWK 346
           +    +    ++ + +  + +          L+ L  +DLS N +       + NS   K
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY---LKNSAC-K 357

Query: 347 VGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKG 406
               SL  L      +    ++      + L+    +L  L        +++N +     
Sbjct: 358 GAWPSLQTLVLSQNHL--RSMQKTGEILLTLK----NLTSL-------DISRNTFHPMPD 404

Query: 407 VI--LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLD 464
                E M  L+LSS  +   + + I   Q +  L++S N L  S       L+    L 
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELY 457

Query: 465 LSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           +S NKL   +P   +    L    +S N L 
Sbjct: 458 ISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (285), Expect = 8e-27
 Identities = 81/451 (17%), Positives = 146/451 (32%), Gaps = 49/451 (10%)

Query: 58  SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG 117
             D    SFT  +P     +   +  +++S N         +     L+ L + ++    
Sbjct: 9   VCDGRSRSFT-SIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN- 63

Query: 118 ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRS 175
            +      +  SL  LDLS+N+       +     L+ L+ L L  N +       L  +
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 176 -TELMVLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233
            T L  L I N      I        + L  L +    L          + D+  L +  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 234 NNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN 292
           +  +  +    + LSSV +L L++  L     +          +       S       N
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 293 EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352
           E   L   +L  + ++                D + N L G      ++ +         
Sbjct: 242 ELLKLLRYILELSEVE--------------FDDCTLNGL-GDFNPSESDVV--------- 277

Query: 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM 412
                E   V  V IR  +     L  D S +  L+++V+   +  ++         +H+
Sbjct: 278 ----SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 413 AG---LDLSSNELTGNI---PSEIGDLQNIHGLNLSYNFLS--GSIPESFSNLKMIESLD 464
                LDLS N +        +  G   ++  L LS N L       E    LK + SLD
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 465 LSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           +S N  +  +P        +   ++S   + 
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (273), Expect = 3e-25
 Identities = 59/365 (16%), Positives = 118/365 (32%), Gaps = 32/365 (8%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL--- 59
                +LKYL+L  N       T L  N T L+ L + N             GL SL   
Sbjct: 94  FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 60  DISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG-- 117
           +I   S            ++ + ++ +  +     +      +  +R+L++   N A   
Sbjct: 154 EIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 118 ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM---------------NLTQLQLLYLDNN 162
                +      +  L    +    + F   +               + T   L   + +
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 163 HFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFND 222
                 + G + +  +  L I    L   + +       ++ +++  + +          
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 223 LLDLEILNISENNLSGSMISTL----NLSSVEHLYLQNNALG--GSIPNTFFRGSALETL 276
           L  LE L++SEN +    +          S++ L L  N L               L +L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 277 DLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP 336
           D+  N F   +P        +R L L +  ++  +    C  + L ++D+S+N L  S  
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKT--CIPQTLEVLDVSNNNL-DSFS 447

Query: 337 ACITN 341
             +  
Sbjct: 448 LFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.3 bits (245), Expect = 9e-22
 Identities = 55/350 (15%), Positives = 112/350 (32%), Gaps = 37/350 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           ++ +L L  ++ A        +  + +  L L + + + FQ +      +S  + K +F 
Sbjct: 173 DIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 68  GELPQNMGIV-----------LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVS----- 111
           G +  +               L ++ + + + N      PS    +  L  ++       
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 112 --TNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGK 167
                +      ++ +    +  + + N+     + P     +L  L+ L L  N    +
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 168 IKDG---LLRSTELMVLDISNNRLS--GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFND 222
                        L  L +S N L         +     L  L +S+N     +P     
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 223 LLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNN 282
              +  LN+S   +   ++ T    ++E L + NN L  S          L+ L +  N 
Sbjct: 409 PEKMRFLNLSSTGIR--VVKTCIPQTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNK 462

Query: 283 FSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY 332
               +P        L  + +  N L+        RL  L  + L  N   
Sbjct: 463 LK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 2e-31
 Identities = 68/463 (14%), Positives = 147/463 (31%), Gaps = 40/463 (8%)

Query: 69  ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCF 128
           E+ QN      +     ++ +S +  + S       ++ LD+S N  + ++S + +    
Sbjct: 4   EIKQN----GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL 188
            L  L+LS+N        +  +L+ L+ L L+NN+        LL    +  L  +NN +
Sbjct: 59  KLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI 111

Query: 189 SGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL--NL 246
           S  +          + + ++ N +     +       ++ L++  N +     + L  + 
Sbjct: 112 S-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
            ++EHL LQ N +   +         L+TLDL  N  +  +  +    + +  + LR N 
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVD 366
           L   I   L   + L   DL  N  +            +   N+ +  + ++        
Sbjct: 226 LVL-IEKALRFSQNLEHFDLRGNGFH------CGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 367 IRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNI 426
             +                 L              +    +  +  A L    +E    +
Sbjct: 279 NEEECTVPTLGHYGAYCCEDL---------PAPFADRLIALKRKEHALLSGQGSETE-RL 328

Query: 427 PSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP---PQLTELHS 483
             E  +      ++         I +     +   +L+     L+ Q+        EL  
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

Query: 484 LSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKS 526
             +  V    L     ++           R           ++
Sbjct: 389 TLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (278), Expect = 3e-26
 Identities = 55/329 (16%), Positives = 103/329 (31%), Gaps = 20/329 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           N+K LDLS N L+       L   TKLE+L L +N         +   L +LD++ N   
Sbjct: 35  NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ 93

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
            EL          +  ++ + N+    +  S    QG + + ++ N     L        
Sbjct: 94  -ELLV-----GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKIT-MLRDLDEGCR 143

Query: 128 FSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN 186
             + +LDL  N  D   F     +   L+ L L  N         +     L  LD+S+N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK--LKTLDLSSN 201

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL 246
           +L+  +     + + +  +S+  N L   I        +LE  ++  N      +     
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
            +     +    +           +                    +    L+        
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 307 LQG----PIPHQLCRLRKLGIMDLSHNRL 331
            QG     +  +     +   +D    + 
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQY 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  107 bits (269), Expect = 5e-25
 Identities = 68/494 (13%), Positives = 145/494 (29%), Gaps = 65/494 (13%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
             K   ++ + L       L ++   ++ L L  N  S               IS     
Sbjct: 11  RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS--------------QISAADLA 55

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                       KL  +N+S N         +  +  LR LD++ N          +   
Sbjct: 56  P---------FTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV------QELLVG 98

Query: 128 FSLIWLDLSNNN---FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
            S+  L  +NNN                  + +YL NN  +          + +  LD+ 
Sbjct: 99  PSIETLHAANNNISRVSCSRGQG------KKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 185 NNRLSG-HIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST 243
            N +   +      +   L+ L++  N +  ++  Q      L+ L++S N L+      
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEF 210

Query: 244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
            + + V  + L+NN L   I         LE  DLR N F      +     N R   + 
Sbjct: 211 QSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVA 268

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
              ++              +                   +  K    +L        +  
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

Query: 364 NVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT 423
             +  +      ++   +   R ++ QV +                +    L+     L 
Sbjct: 329 ECER-ENQARQREIDALKEQYRTVIDQVTLR--------------KQAKITLEQKKKALD 373

Query: 424 GNIPSEIGDLQNIHGLNLSYNFLSG--SIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 481
             + +       + G               E  S L+++ ++   + ++   +  Q  + 
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY--VEQQSVQN 431

Query: 482 HSLSKFDVSYNNLS 495
           +++  +D+  +  +
Sbjct: 432 NAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.8 bits (241), Expect = 2e-21
 Identities = 63/370 (17%), Positives = 127/370 (34%), Gaps = 33/370 (8%)

Query: 168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLE 227
           I +         +  ++++ L   + S   +   ++ L +S N L             LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 228 ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRI 287
           +LN+S N L    +   +LS++  L L NN +          G ++ETL   +NN S R+
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 288 PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347
                     + + L  N +            ++  +DL  N +     A +  S     
Sbjct: 115 SCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS---- 168

Query: 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407
             ++L  L+ +   + +V  +  +     L L  + L ++  + +               
Sbjct: 169 --DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQ--------------- 211

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLS-GSIPESFSNLKMIESLDLS 466
               +  + L +N+L   I   +   QN+   +L  N    G++ + FS  + ++++   
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 467 HNK-LNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINK 525
             K L GQ   + T             +L  P  D+       E +           +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 526 SCTNLPKLLE 535
              N  +  E
Sbjct: 331 ERENQARQRE 340

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 6e-12
 Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 32/235 (13%)

Query: 262 SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKL 321
           +I      G+  +   + D++    +        N++ L L  N L       L    KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 322 GIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDE 381
            +++LS N LY ++               +L  L     D+ N  +++            
Sbjct: 61  ELLNLSSNVLYETLDL---------ESLSTLRTL-----DLNNNYVQELLVGP------- 99

Query: 382 SDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNL 441
             +  L           N          +    + L++N++T     + G    +  L+L
Sbjct: 100 -SIETL-------HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 442 SYNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
             N +   +  E  ++   +E L+L +N +   +  Q+     L   D+S N L+
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (295), Expect = 2e-28
 Identities = 79/330 (23%), Positives = 128/330 (38%), Gaps = 29/330 (8%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           NL  ++ S+N+L    P   L+N TKL  + + NN  +          L  L +  N  T
Sbjct: 69  NLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 125

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
              P      L  L  + +S N+      S+++ +  L+ L    N          + N 
Sbjct: 126 DIDPLKN---LTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP---LANL 176

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
            +L  LD+S+N            LT L+ L   NN  S     G+L  T L  L ++ N+
Sbjct: 177 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQ 232

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NL 246
           L       + + + L  L ++ N +    P   + L  L  L +  N +S   IS L  L
Sbjct: 233 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGL 286

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
           +++ +L L  N L    P +      L  L L  NN S   P  ++  + L+ L    N 
Sbjct: 287 TALTNLELNENQLEDISPISNL--KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRLYGSIP 336
           +       L  L  +  +   HN++    P
Sbjct: 343 VSDVSS--LANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  114 bits (287), Expect = 2e-27
 Identities = 94/494 (19%), Positives = 156/494 (31%), Gaps = 59/494 (11%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
                 L    +          +  ++  L                + L  ++ S N  T
Sbjct: 25  EKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 81

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
              P      L KLV + ++ N       + +A +  L  L +  N          + N 
Sbjct: 82  DITPLK---NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT---DIDPLKNL 133

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
            +L  L+LS+N            LT LQ L   N     K    L   T L  LDIS+N+
Sbjct: 134 TNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANL---TTLERLDISSNK 188

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NL 246
           +S    S +   + L+ L  + N +    P     L +L+ L+++ N L    I TL +L
Sbjct: 189 VSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASL 242

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
           +++  L L NN +    P +    + L  L L  N  S   P  +   + L  L L  N 
Sbjct: 243 TNLTDLDLANNQISNLAPLSGL--TKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVD 366
           L+   P  +  L+ L  + L  N +    P               L +L      V +V 
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISDISPVS---------SLTKLQRLFFYNNKVSDVS 347

Query: 367 IRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNI 426
                 +   L    + +  L     +  +T+                L L+    T   
Sbjct: 348 SLANLTNINWLSAGHNQISDL---TPLANLTRITQ-------------LGLNDQAWTNAP 391

Query: 427 PSEIGDLQNIHGLNLSYNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 485
            +      N+   N   N     I P + S+       D++ N  +              
Sbjct: 392 VNY---KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPV 447

Query: 486 KFDVSYNNLSGPIP 499
                    SG + 
Sbjct: 448 TIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (278), Expect = 3e-26
 Identities = 85/457 (18%), Positives = 164/457 (35%), Gaps = 54/457 (11%)

Query: 78  LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN 137
           L + +   + K +    +      +  +  L           S   V    +L  ++ SN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 77

Query: 138 NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 197
           N           NLT+L  + ++NN  +       L  T L  L + NN+++   P  + 
Sbjct: 78  NQLTD--ITPLKNLTKLVDILMNNNQIADITPLANL--TNLTGLTLFNNQITDIDP--LK 131

Query: 198 NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNN 257
           N + L  L +S N +        + L  L+ L+          ++  NL+++E L + +N
Sbjct: 132 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLA--NLTTLERLDISSN 187

Query: 258 ALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCR 317
            +  S  +   + + LE+L   +N  S   P  +   +NL  L L  N L+      L  
Sbjct: 188 KV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LAS 241

Query: 318 LRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQL 377
           L  L  +DL++N++    P           G   L +L      + N+            
Sbjct: 242 LTNLTDLDLANNQISNLAPLS---------GLTKLTELKLGANQISNI------------ 280

Query: 378 RLDESDLRWLVKQVEVNFMTKNRYESYKGV-ILEHMAGLDLSSNELTGNIPSEIGDLQNI 436
               S L  L   +    + +N+ E    +  L+++  L L  N ++   P  +  L  +
Sbjct: 281 ----SPLAGL-TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 437 HGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSG 496
             L    N +S     S +NL  I  L   HN+++   P  L  L  +++  ++    + 
Sbjct: 334 QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 497 PIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKL 533
              + +   +   +       L  P       +  + 
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEP 426

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  102 bits (257), Expect = 2e-23
 Identities = 78/383 (20%), Positives = 151/383 (39%), Gaps = 41/383 (10%)

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
           T     +   L   N       +  +L Q+  L  D         DG+     L  ++ S
Sbjct: 21  TALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFS 76

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
           NN+L+   P  + N + L  + M+ N +    P    +L +L  L +  N ++   I  L
Sbjct: 77  NNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--IDPL 130

Query: 245 -NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
            NL+++  L L +N +  S  +     ++L+ L    N  +   P  +   + L  L + 
Sbjct: 131 KNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDIS 185

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
           +N +       L +L  L  +  ++N++    P              +L +L   G  + 
Sbjct: 186 SNKVSDISV--LAKLTNLESLIATNNQISDITPLG---------ILTNLDELSLNGNQLK 234

Query: 364 NVDIRDYYNSTVQLRL------DESDLRWLVKQVEVNFMTKNRYESYKGVI-LEHMAGLD 416
           ++       +   L L      + + L  L K  E+  +  N+  +   +  L  +  L+
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-LGANQISNISPLAGLTALTNLE 293

Query: 417 LSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 476
           L+ N+L     S I +L+N+  L L +N +S   P   S+L  ++ L   +NK++     
Sbjct: 294 LNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 347

Query: 477 QLTELHSLSKFDVSYNNLSGPIP 499
            L  L +++     +N +S   P
Sbjct: 348 SLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 54/279 (19%), Positives = 103/279 (36%), Gaps = 26/279 (9%)

Query: 226 LEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
           L    I+++     + +   L+      L    +  ++  T      + TL         
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL--DQVTTLQADRLGIK- 59

Query: 286 RIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFW 345
                +   +NL  +    N L    P  L  L KL  + +++N++    P     +L  
Sbjct: 60  -SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNL-- 114

Query: 346 KVGNESLY----QLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRY 401
                 L     Q+ +        ++     S+  +  D S L  L    +++F   N+ 
Sbjct: 115 ----TGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSF--GNQV 167

Query: 402 ESYKGVI-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMI 460
              K +  L  +  LD+SSN+++    S +  L N+  L  + N +S   P     L  +
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL 223

Query: 461 ESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499
           + L L+ N+L       L  L +L+  D++ N +S   P
Sbjct: 224 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (288), Expect = 4e-28
 Identities = 70/325 (21%), Positives = 128/325 (39%), Gaps = 25/325 (7%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           ++  L ++  K+A +     +E  T LE L L  N  +          L +L I  N  T
Sbjct: 45  SITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT 101

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                 +   L  L  + +++++      S +A +  +  L++  N+   +LS   ++N 
Sbjct: 102 D--ISALQ-NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP--LSNM 154

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             L +L ++ +           NLT L  L L+ N          L  T L       N+
Sbjct: 155 TGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISPLASL--TSLHYFTAYVNQ 210

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NL 246
           ++   P  + N + L  L +  N +    P    +L  L  L I  N +S   I+ + +L
Sbjct: 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDL 264

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
           + ++ L + +N +  S  +     S L +L L +N         I   +NL  L L  N+
Sbjct: 265 TKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRL 331
           +    P  L  L K+   D ++  +
Sbjct: 323 ITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (285), Expect = 1e-27
 Identities = 64/329 (19%), Positives = 116/329 (35%), Gaps = 23/329 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
                 L    +         E    +  L +     +  Q       L  L+++ N  T
Sbjct: 23  EGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT 79

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
              P +    L KL  + I  N       S++  +  LR L ++ +N +     S + N 
Sbjct: 80  DISPLSN---LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDI---SPLANL 131

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             +  L+L  N+    +     N+T L  L +  +         +   T+L  L ++ N+
Sbjct: 132 TKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQ 188

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
           +    P  + + + L   +   N +    P    ++  L  L I  N ++  +    NLS
Sbjct: 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSPLANLS 243

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
            +  L +  N +  S  N     + L+ L++  N  S      +N  S L +L L  N L
Sbjct: 244 QLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQL 299

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIP 336
                  +  L  L  + LS N +    P
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (255), Expect = 9e-24
 Identities = 66/334 (19%), Positives = 122/334 (36%), Gaps = 27/334 (8%)

Query: 9   LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTG 68
              L      +   FP     +  +     L   S +          +  L ++      
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVAS 58

Query: 69  ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCF 128
              Q +   L  L Y+N++ N      P  ++ +  L  L + TN        S + N  
Sbjct: 59  --IQGIE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT---DISALQNLT 110

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL 188
           +L  L L+ +N          NLT++  L L  NH    +   L   T L  L ++ +++
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167

Query: 189 SGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLS 247
               P  + N + L  LS++ N +E   P     L  L       N ++   I+ + N++
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMT 221

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
            +  L + NN +    P      S L  L++  N  S    + + + + L+ L + +N +
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN 341
                  L  L +L  + L++N+L       I  
Sbjct: 278 SDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.1 bits (240), Expect = 8e-22
 Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 21/278 (7%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            L  L +  NK+  +     L+N T L  LYL  ++ S          + SL++  N   
Sbjct: 89  KLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNL 145

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
            +L       +  L Y+ ++++  +   P  IA +  L  L ++ N        S + + 
Sbjct: 146 SDLSPLSN--MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI---SPLASL 198

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
            SL +     N           N+T+L  L + NN  +      L   ++L  L+I  N+
Sbjct: 199 TSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQ 254

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NL 246
           +S    + + + + L++L++  N +  +I V  N+L  L  L ++ N L    +  +  L
Sbjct: 255 ISD--INAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS 284
           +++  L+L  N +    P      S +++ D  +    
Sbjct: 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 7e-11
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 37/274 (13%)

Query: 226 LEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
              L      ++  +    +L+      LQ  ++   +        ++  L +     + 
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVTQEEL--ESITKLVVAGEKVAS 58

Query: 286 RIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFW 345
                I   +NL  L L  N +    P  L  L KL  + +  N++  +  + + N    
Sbjct: 59  IQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQN---- 108

Query: 346 KVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYK 405
                +L +L     ++ ++           L L  +     +  +              
Sbjct: 109 ---LTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSN------------ 153

Query: 406 GVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDL 465
              +  +  L ++ +++    P  I +L +++ L+L+YN +    P   ++L  +     
Sbjct: 154 ---MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206

Query: 466 SHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499
             N++    P  +  +  L+   +  N ++   P
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           L  +  L++ SN+++    S + +L  ++ L L+ N L     E    L  + +L LS N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLS 495
            +    P  L  L  +   D +   + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           L++ +N+++    + + DL  +  LN+  N +S       +NL  + SL L++N+L  + 
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 475 PPQLTELHSLSKFDVSYNNLSGPIP 499
              +  L +L+   +S N+++   P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           L L+ N++     S +  L ++H      N ++   P   +N+  + SL + +NK+    
Sbjct: 182 LSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 475 PPQLTELHSLSKFDVSYNNLSGP 497
           P  L  L  L+  ++  N +S  
Sbjct: 238 P--LANLSQLTWLEIGTNQISDI 258

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (283), Expect = 3e-27
 Identities = 69/355 (19%), Positives = 132/355 (37%), Gaps = 34/355 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ--LTGAQHGLLSLDISKNS 65
           N K +   ++ +    P  LL++  ++E+L L +              H +  L +  N+
Sbjct: 46  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLV 124
               LP ++   +  L  + + +N    ++P  I      L  L +S NN    +     
Sbjct: 105 IR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF 161

Query: 125 TNCFSLIWLDLSNNN---FDGQIFPNYMNL-------------TQLQLLYLDNNHFSGKI 168
               SL  L LS+N     D  + P+  +                ++ L   +N  +  +
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VV 220

Query: 169 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI 228
           +  +     L +L + +N L+    +W+ N+  L  + +S N LE  +   F  +  LE 
Sbjct: 221 RGPVNVE--LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

Query: 229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIP 288
           L IS N L    +    + +++ L L +N L   +     +   LE L L  N+    + 
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIV-TLK 334

Query: 289 HQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343
             ++ H  L+ L L  N         L   R +    +     +  I   + + L
Sbjct: 335 --LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (262), Expect = 1e-24
 Identities = 64/401 (15%), Positives = 136/401 (33%), Gaps = 51/401 (12%)

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNR 187
               + +     D       + L   +++   N+    K+   LL S  ++ +L++++ +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NL 246
           +             +Q L M  N +    P  F ++  L +L +  N+LS        N 
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 247 SSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305
             +  L + NN L   I +  F+  ++L+ L L  N  +  +   +    +L    +  N
Sbjct: 141 PKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYN 196

Query: 306 YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLY----QLDEEGAD 361
            L       L     +  +D SHN +   +   +   L        L      L +    
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSI-NVVRGPVNVEL------TILKLQHNNLTDTAWL 244

Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNE 421
           +    +        ++ L  ++L  ++    V               ++ +  L +S+N 
Sbjct: 245 LNYPGLV-------EVDLSYNELEKIMYHPFVK--------------MQRLERLYISNNR 283

Query: 422 LTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 481
           L   +      +  +  L+LS+N L   +  +      +E+L L HN +   +       
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--H 338

Query: 482 HSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPP 522
           H+L    +S+N+       +  F      +       C   
Sbjct: 339 HTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.7 bits (249), Expect = 8e-23
 Identities = 63/335 (18%), Positives = 120/335 (35%), Gaps = 29/335 (8%)

Query: 5   HQFNLKYLDLSHNKLAGNFPTWLLENN-TKLEVLYLINNSFSGFQ---LTGAQHGLLSLD 60
            Q++  + D+  +    +      +      +++   N++        L   +  +  L+
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLN 75

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
           ++      E+          +  + +  N+     P     +  L  L +  N+ +  L 
Sbjct: 76  LNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 121 QSLVTNCFSLIWLDLSNNNF---DGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTE 177
           + +  N   L  L +SNNN    +   F      T LQ L L +N  +  +   L+ S  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTF---QATTSLQNLQLSSNRLT-HVDLSLIPS-- 187

Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
           L   ++S N LS      +     ++ L  S N +     V+    ++L IL +  NNL+
Sbjct: 188 LFHANVSYNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT 239

Query: 238 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEHSN 296
                 LN   +  + L  N L   I    F     LE L + +N     +         
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT 296

Query: 297 LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
           L+ L L  N+L   +     +  +L  + L HN +
Sbjct: 297 LKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.2 bits (245), Expect = 3e-22
 Identities = 62/355 (17%), Positives = 126/355 (35%), Gaps = 45/355 (12%)

Query: 147 NYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM-GNFSYLQIL 205
           N         +++D            +      ++   N+ +   +P+ +  +F  +++L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 206 SMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 264
           +++   +E      F     ++ L +  N +         N+  +  L L+ N L  S+P
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP 133

Query: 265 NTFFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLG 322
              F     L TL + +NN   RI     +  ++L+ L L +N L       +  L    
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA- 191

Query: 323 IMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDES 382
             ++S+N L  ++   I           ++ +LD     +  V                 
Sbjct: 192 --NVSYNLL-STLAIPI-----------AVEELDASHNSINVVR-----------GPVNV 226

Query: 383 DLRWLVKQVEVNFMTKNRYESYKGVI-LEHMAGLDLSSNELTGNIPSEI-GDLQNIHGLN 440
           +L  L        +  N       ++    +  +DLS NEL   I       +Q +  L 
Sbjct: 227 ELTIL-------KLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLY 278

Query: 441 LSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           +S N L  ++      +  ++ LDLSHN L   +     +   L    + +N++ 
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 35/187 (18%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
           L     ++ LD SHN +       +      L +L L +N+ +         GL+ +D+S
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRGPVNVE---LTILKLQHNNLTDTAWLLNYPGLVEVDLS 256

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQS 122
            N                     I  + F          MQ L  L +S N     L+  
Sbjct: 257 YNELE-----------------KIMYHPFVK--------MQRLERLYISNNRLV-ALNLY 290

Query: 123 LVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD 182
                 +L  LDLS+N+    +  N     +L+ LYLD+N     +K     +  L  L 
Sbjct: 291 G-QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT--LKNLT 345

Query: 183 ISNNRLS 189
           +S+N   
Sbjct: 346 LSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQ-HGLLSLDI 61
           L +   L  +DLS+N+L             +LE LY+ NN      L G     L  LD+
Sbjct: 244 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
           S N     + +N      +L  + +  NS    +  S      L+ L +S N++     +
Sbjct: 303 SHNHLL-HVERNQPQ-FDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLR 357

Query: 122 SLVTNCFSL 130
           +L  N    
Sbjct: 358 ALFRNVARP 366

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 1e-26
 Identities = 70/312 (22%), Positives = 119/312 (38%), Gaps = 22/312 (7%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGA---QHGLLSLDISKN 64
             + LDL  N++          +   LE L L  N  S  +  GA      L +L +  N
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSN 90

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSL 123
                +P  +   L  L  ++IS+N     +   +   +  L+ L+V  N+    +S   
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 124 VTNCFSLIWLDLSNNNF---DGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELM 179
            +   SL  L L   N      +      +L  L +L L + + +  I+D   +    L 
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNIN-AIRDYSFKRLYRLK 203

Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS 239
           VL+IS+      +         L  LS++   L     +    L+ L  LN+S N +S  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 240 MISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEH-SN 296
             S L  L  ++ + L    L   +    FRG + L  L++  N  +  +   +     N
Sbjct: 264 EGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321

Query: 297 LRALLLRANYLQ 308
           L  L+L +N L 
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (265), Expect = 2e-24
 Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 20/292 (6%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ---LTGAQHGLLSL 59
                +L+ L+L+ N ++         N   L  L L +N          TG  + L  L
Sbjct: 52  FASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LTKL 109

Query: 60  DISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGEL 119
           DIS+N     L   M   L  L  + +  N        + + +  L  L +   N    +
Sbjct: 110 DISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SI 167

Query: 120 SQSLVTNCFSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRSTE 177
               +++   LI L L + N       +Y    L +L++L + +  +   +    L    
Sbjct: 168 PTEALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 178 LMVLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236
           L  L I++  L+  +P     +  YL+ L++S N +        ++LL L+ + +    L
Sbjct: 226 LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 237 SGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFS 284
             +++       L+ +  L +  N L  ++  + F     LETL L  N  +
Sbjct: 285 --AVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 2e-23
 Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 23/269 (8%)

Query: 95  IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNF---DGQIFPNYMNL 151
           +P  I      R LD+  N     L+Q    +   L  L+L+ N     +   F N   L
Sbjct: 26  VPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNN---L 79

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
             L+ L L +N     I  G+    + L  LDIS N++   +     +   L+ L +  N
Sbjct: 80  FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 211 LLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFF 268
            L   I  + F+ L  LE L + + NL+      L +L  +  L L++  +  +I +  F
Sbjct: 139 DLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSF 196

Query: 269 RG-SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS 327
           +    L+ L++    +   +        NL +L +    L       +  L  L  ++LS
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 328 HNRLYGSIPACITNSLFWKVGNESLYQLD 356
           +N +     + I  S+        L ++ 
Sbjct: 257 YNPI-----STIEGSML--HELLRLQEIQ 278

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 5e-23
 Identities = 67/327 (20%), Positives = 123/327 (37%), Gaps = 54/327 (16%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISE 233
            TE  +LD+  NR+         +F +L+ L +++N++   +    FN+L +L  L +  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 234 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI 291
           N L    +     LS++  L +  N +   + +  F+    L++L++ DN+    I H+ 
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 292 -NEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
            +  ++L  L L    L       L  L  L ++ L H  +       I +  F     +
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-----AIRDYSF-----K 197

Query: 351 SLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILE 410
            LY+L                     L +               ++         G+ L 
Sbjct: 198 RLYRLKV-------------------LEISHW-----------PYLDTMTPNCLYGLNLT 227

Query: 411 HMAGLDLSSNELTGNIPSE-IGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK 469
               L ++   LT  +P   +  L  +  LNLSYN +S         L  ++ + L   +
Sbjct: 228 S---LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

Query: 470 LNGQIPPQ-LTELHSLSKFDVSYNNLS 495
           L   + P     L+ L   +VS N L+
Sbjct: 284 LA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 67/325 (20%), Positives = 118/325 (36%), Gaps = 53/325 (16%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
           S +   +     R    +P   G  +  ++L + KN ++     +F     LE L ++EN
Sbjct: 10  SAQDRAVLCHRKRFV-AVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 235 NLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQIN 292
            +S        NL ++  L L++N L   IP   F G S L  LD+ +N     + +   
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125

Query: 293 EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352
           +  NL++L +  N L          L  L  + L    L  SIP               L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPT----EAL-----SHL 175

Query: 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM 412
           + L                     LRL                +   R  S+K   L  +
Sbjct: 176 HGLIV-------------------LRLRH------------LNINAIRDYSFKR--LYRL 202

Query: 413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLN 471
             L++S       +        N+  L++++  L+ ++P  +  +L  +  L+LS+N ++
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 472 GQIPPQ-LTELHSLSKFDVSYNNLS 495
             I    L EL  L +  +    L+
Sbjct: 262 -TIEGSMLHELLRLQEIQLVGGQLA 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 3e-26
 Identities = 45/329 (13%), Positives = 100/329 (30%), Gaps = 23/329 (6%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
              H    + L    +     +   L    ++ +  Y  + +        A      ++ 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 62  SKNSFTGELPQNMGI-VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
                       +        V + +         P    ++  L+ + +       EL 
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFPNYM-NLTQLQLLYL-DNNHF--------SGKIKD 170
            ++      L  L L+ N    +  P  + +L +L+ L +              S     
Sbjct: 121 DTM-QQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 171 GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILN 230
                  L  L +    +   +P+ + N   L+ L +  + L   +    + L  LE L+
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235

Query: 231 ISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPH 289
           +       +        + ++ L L++ +   ++P    R + LE LDLR      R+P 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 290 QINEHSNLRALLLRANYLQGPIPHQLCRL 318
            I +      +L+  +       H+    
Sbjct: 296 LIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 46/328 (14%), Positives = 100/328 (30%), Gaps = 45/328 (13%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
           S+    L    +         +  +        ++            +  + +I   +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGR 66

Query: 235 NLSG--SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN 292
            L     ++          L L++  L    P+  FR S L+ + +        +P  + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 293 EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352
           + + L  L L  N L+  +P  +  L +L  + +        +P  + +       ++ L
Sbjct: 125 QFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAS-TDASGEHQGL 182

Query: 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM 412
             L                     LRL+ + +R L   +                 L+++
Sbjct: 183 VNLQS-------------------LRLEWTGIRSLPASIAN---------------LQNL 208

Query: 413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNG 472
             L + ++ L+  +   I  L  +  L+L       + P  F     ++ L L       
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 473 QIPPQLTELHSLSKFDVSYNNLSGPIPD 500
            +P  +  L  L K D+        +P 
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 50/280 (17%), Positives = 89/280 (31%), Gaps = 38/280 (13%)

Query: 236 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPH------ 289
           +  S     + S  E+LY Q +       +   +       D    + + R  +      
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 290 ---------------QINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334
                          +        AL LR+  L    P Q  RL  L  M +    L   
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGL-ME 118

Query: 335 IPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLR-LDESDLRWLVKQVEV 393
           +P  +            L  L      +    +R    S   L  L E  +R   +  E+
Sbjct: 119 LPDTMQQ-F------AGLETL-----TLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 394 NFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES 453
                +   S +   L ++  L L    +  ++P+ I +LQN+  L +  + LS ++  +
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 454 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNN 493
             +L  +E LDL         PP       L +  +   +
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 1e-25
 Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 21/265 (7%)

Query: 69  ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCF 128
           E+ QN      +     ++ +S +  + S       ++ LD+S N  + ++S + +    
Sbjct: 4   EIKQN----GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL 188
            L  L+LS+N        +  +L+ L+ L L+NN+        LL    +  L  +NN +
Sbjct: 59  KLELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

Query: 189 SGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL--NL 246
           S  +          + + ++ N +     +       ++ L++  N +     + L  + 
Sbjct: 112 S-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
            ++EHL LQ N +   +         L+TLDL  N  +  +  +    + +  + LR N 
Sbjct: 169 DTLEHLNLQYNFI-YDVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRL 331
           L   I   L   + L   DL  N  
Sbjct: 226 LVL-IEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 8e-25
 Identities = 47/277 (16%), Positives = 103/277 (37%), Gaps = 17/277 (6%)

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
                ++ +S   +   ++      +  +++S N       + +A    L  L++S+N  
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
              L    + +  +L  LDL+NN    Q          ++ L+  NN+ S ++     + 
Sbjct: 71  YETLD---LESLSTLRTLDLNNNYV--QELL---VGPSIETLHAANNNIS-RVSCSRGQG 121

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG-NIPVQFNDLLDLEILNISEN 234
                + ++NN+++       G  S +Q L +  N ++  N          LE LN+  N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH 294
            +   +   +  + ++ L L +N L   +   F   + +  + LR+N     I   +   
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 295 SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
            NL    LR N        +    +   +  ++   +
Sbjct: 237 QNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 41/277 (14%), Positives = 87/277 (31%), Gaps = 19/277 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            L+ L+LS N L        LE+ + L  L L NN             + +L  + N+ +
Sbjct: 59  KLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNIS 112

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             +  + G   + +    ++ N               +++LD+  N         L  + 
Sbjct: 113 -RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
            +L  L+L  N          +   +L+ L L +N  +  +      +  +  + + NN+
Sbjct: 169 DTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
           L   I   +     L+   +  N         F       +  +++  +           
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEEC 283

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS 284
           +V  L          +P  F        + L  ++  
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 52/253 (20%), Positives = 95/253 (37%), Gaps = 16/253 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           N+K LDLS N L+       L   TKLE+L L +N         +   L +LD++ N   
Sbjct: 35  NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ 93

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
            EL          +  ++ + N+    +  S    QG + + ++ N     L        
Sbjct: 94  -ELLV-----GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKIT-MLRDLDEGCR 143

Query: 128 FSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN 186
             + +LDL  N  D   F     +   L+ L L  N     +K  ++   +L  LD+S+N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSN 201

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL 246
           +L+  +     + + +  +S+  N L   I        +LE  ++  N      +     
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 247 SSVEHLYLQNNAL 259
            +     +    +
Sbjct: 260 KNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 8e-22
 Identities = 54/328 (16%), Positives = 106/328 (32%), Gaps = 79/328 (24%)

Query: 168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLE 227
           I +         +  ++++ L   + S   +   ++ L +S N L             LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 228 ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRI 287
           +LN+S N L    +   +LS++  L L NN +          G ++ETL   +NN S R+
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 288 PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347
                     + +                         L++N++   +            
Sbjct: 115 SCSRG--QGKKNI------------------------YLANNKI-TMLRDLDEGCR---- 143

Query: 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407
               +  LD +  ++  V+  +   S+  L                              
Sbjct: 144 --SRVQYLDLKLNEIDTVNFAELAASSDTLEH---------------------------- 173

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
                  L+L  N +  ++  ++     +  L+LS N L+  +   F +   +  + L +
Sbjct: 174 -------LNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 468 NKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           NKL   I   L    +L  FD+  N   
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 13/222 (5%)

Query: 121 QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
             +  N        +++++    +     +   ++ L L  N  S      L   T+L +
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
           L++S+N L       + + S L+ L ++ N ++     +      +E L+ + NN+  S 
Sbjct: 63  LNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI--SR 113

Query: 241 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG-RIPHQINEHSNLRA 299
           +S       +++YL NN +           S ++ LDL+ N                L  
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 300 LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN 341
           L L+ N++   +  Q+    KL  +DLS N+L   +     +
Sbjct: 174 LNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL-AFMGPEFQS 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 43/237 (18%), Positives = 82/237 (34%), Gaps = 36/237 (15%)

Query: 262 SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKL 321
           +I      G+  +   + D++    +        N++ L L  N L       L    KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 322 GIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDE 381
            +++LS N LY                 ESL  L                     L L+ 
Sbjct: 61  ELLNLSSNVLY-ETLDL-----------ESLSTLRT-------------------LDLNN 89

Query: 382 SDLRWLV--KQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGL 439
           + ++ L+    +E      N          +    + L++N++T     + G    +  L
Sbjct: 90  NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 440 NLSYNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           +L  N +   +  E  ++   +E L+L +N +   +  Q+     L   D+S N L+
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 13/74 (17%), Positives = 26/74 (35%)

Query: 426 IPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 485
           I     +        ++ + L  ++     +   ++ LDLS N L+      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 486 KFDVSYNNLSGPIP 499
             ++S N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (274), Expect = 1e-25
 Identities = 89/464 (19%), Positives = 156/464 (33%), Gaps = 82/464 (17%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
               L+L++  L     + L E    LE L    NS +  +L      L SL +  N+  
Sbjct: 72  QAHELELNNLGL-----SSLPELPPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLK 124

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             L      +   L Y+ +S N  E  +P  +     L+ +DV  N+      + L    
Sbjct: 125 -ALSD----LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL-----KKLPDLP 172

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
            SL ++   NN    +  P   NL  L  +Y DNN    K+ D       L  +   NN 
Sbjct: 173 PSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNI 226

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
           L   +P  + N  +L  +    NLL+  +P   +    LE LN+ +N L+       +L+
Sbjct: 227 LE-ELPE-LQNLPFLTTIYADNNLLK-TLP---DLPPSLEALNVRDNYLTDLPELPQSLT 280

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
            ++      + L    PN       L  L+   N     +        +L  L +  N L
Sbjct: 281 FLDVSENIFSGLSELPPN-------LYYLNASSNEIR-SLCDLP---PSLEELNVSNNKL 329

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDI 367
              +P    RL +L     S N L   +P    N     V    L +  +    V ++ +
Sbjct: 330 IE-LPALPPRLERL---IASFNHL-AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 384

Query: 368 RDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP 427
               +   ++     +L+                             L + +N L    P
Sbjct: 385 N---SHLAEVPELPQNLKQ----------------------------LHVETNPLR-EFP 412

Query: 428 SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN 471
                +++   L ++   +      +      +E     H+  +
Sbjct: 413 DIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (258), Expect = 1e-23
 Identities = 72/403 (17%), Positives = 140/403 (34%), Gaps = 57/403 (14%)

Query: 95  IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTN------------CFSLIWLDLSNNNFDG 142
           +P     ++       + + +                             L+L+N     
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-- 83

Query: 143 QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYL 202
              P       L+ L    N  + ++ +       L+V + +   LS   P        L
Sbjct: 84  SSLPE--LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------L 133

Query: 203 QILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 262
           + L +S N LE  +P +  +   L+I+++  N+L   +       S+E +   NN L   
Sbjct: 134 EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD--LPPSLEFIAAGNNQL-EE 187

Query: 263 IPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLG 322
           +P        L  +   +N+   ++P       +L +++   N L+     +L  L  L 
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE--ELPELQNLPFLT 240

Query: 323 IMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDES 382
            +   +N L  ++P    +     V +  L  L E    +  +D+              S
Sbjct: 241 TIYADNNLL-KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV---------SENIFS 290

Query: 383 DLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLS 442
            L  L   +     + N   S    +   +  L++S+N+L   +P+    L+    L  S
Sbjct: 291 GLSELPPNLYYLNASSNEIRSLCD-LPPSLEELNVSNNKLI-ELPALPPRLER---LIAS 345

Query: 443 YNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 485
           +N L+  +PE   NLK    L + +N L  + P     +  L 
Sbjct: 346 FNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.0 bits (242), Expect = 1e-21
 Identities = 83/476 (17%), Positives = 154/476 (32%), Gaps = 87/476 (18%)

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAK-------------M 102
           L       ++ T E+P      ++       + + +E N P    +              
Sbjct: 13  LQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 103 QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM-NLTQLQLLYLDN 161
           +    L+++          SL      L  L  S N+      P    +L  L +   + 
Sbjct: 71  RQAHELELNNLGL-----SSLPELPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNL 123

Query: 162 NHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFN 221
              S            L  L +SNN+L   +P  + N S+L+I+ +  N L+  +P    
Sbjct: 124 KALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDL-- 171

Query: 222 DLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN 281
               LE +    N L   +    NL  +  +Y  NN+L   +P+       LE++   +N
Sbjct: 172 -PPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNN 225

Query: 282 NFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN 341
                   ++     L  +    N L+  +P     L  L   ++  N L   +P    +
Sbjct: 226 ILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEAL---NVRDNYL-TDLPELPQS 278

Query: 342 SLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRY 401
             F  V       L E   ++  ++     N    L      L  L        ++ N+ 
Sbjct: 279 LTFLDVSENIFSGLSELPPNLYYLNASS--NEIRSLCDLPPSLEEL-------NVSNNKL 329

Query: 402 ESYKGVI--LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKM 459
                +   LE    L  S N L   +P    +L+    L++ YN L    P+   +++ 
Sbjct: 330 IELPALPPRLER---LIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVED 381

Query: 460 ----------------IESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499
                           ++ L +  N L  + P     +  L    ++   +  P  
Sbjct: 382 LRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.7 bits (197), Expect = 5e-16
 Identities = 57/334 (17%), Positives = 109/334 (32%), Gaps = 57/334 (17%)

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN- 234
           T L      ++ L+  +P    N         + +  E N P    +  ++ +  + +  
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 235 -------NLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
                   L+   +S+L      +E L    N+L   +P       +L   +      S 
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 128

Query: 286 RIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFW 345
             P        L  L +  N L+  +P +L     L I+D+ +N L   +P    +  F 
Sbjct: 129 LPP-------LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFI 178

Query: 346 KVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYK 405
             GN  L +L E                   +  D + L+ L                  
Sbjct: 179 AAGNNQLEELPELQN----------LPFLTAIYADNNSLKKLPDL--------------- 213

Query: 406 GVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDL 465
                 +  +   +N L      E+ +L  +  +    N L  ++P+   +L+   +L++
Sbjct: 214 ---PLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNV 264

Query: 466 SHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP 499
             N L   +P     L  L   +  ++ LS   P
Sbjct: 265 RDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 33/257 (12%)

Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
             ++ + ++     ++ L   +P       +        + +    P    E   +    
Sbjct: 6   RNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
           LR            C  R+   ++L++  L  S+P    +         SL +L E    
Sbjct: 65  LRD-----------CLDRQAHELELNNLGL-SSLPELPPHLESLVASCNSLTELPELPQS 112

Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI-LEHMAGLDLSSN 420
           + ++ + +  N+   L      L +L        ++ N+ E    +     +  +D+ +N
Sbjct: 113 LKSLLVDN--NNLKALSDLPPLLEYL-------GVSNNQLEKLPELQNSSFLKIIDVDNN 163

Query: 421 ELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 480
            L   +P     L+    +    N L   +PE   NL  + ++   +N L  ++P     
Sbjct: 164 SLK-KLPDLPPSLEF---IAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS 216

Query: 481 LHSLSKFDVSYNNLSGP 497
           L S+       N L   
Sbjct: 217 LESI---VAGNNILEEL 230

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (275), Expect = 1e-25
 Identities = 67/328 (20%), Positives = 117/328 (35%), Gaps = 26/328 (7%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNS 65
           N K +   ++ +    P  LL++  ++E+L L +              H +  L +  N+
Sbjct: 52  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLV 124
               LP ++   +  L  + + +N    ++P  I      L  L +S NN    +     
Sbjct: 111 IR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF 167

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
               SL  L LS+N     +  +   +  L    +  N  S      L     +  LD S
Sbjct: 168 QATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS-----TLAIPIAVEELDAS 219

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
           +N ++  +         L IL +  N L  +      +   L  +++S N L   M    
Sbjct: 220 HNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 245 -NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
             +  +E LY+ NN L  ++         L+ LDL  N+    +     +   L  L L 
Sbjct: 275 VKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
            N +          L+ L    LSHN  
Sbjct: 333 HNSIVTLKLSTHHTLKNL---TLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.5 bits (245), Expect = 8e-22
 Identities = 62/371 (16%), Positives = 134/371 (36%), Gaps = 52/371 (14%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGH 191
           + +     D       + L   +++   N+    K+   LL S  ++ +L++++ ++   
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI 90

Query: 192 IPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSV 249
                     +Q L M  N +   +P   F ++  L +L +  N+LS        N   +
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149

Query: 250 EHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ 308
             L + NN L   I +  F+  ++L+ L L  N  +  +   ++   +L    +  N L 
Sbjct: 150 TTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 205

Query: 309 GPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLY----QLDEEGADVGN 364
                 L     +  +D SHN +   +   +   L        L      L +    +  
Sbjct: 206 -----TLAIPIAVEELDASHNSI-NVVRGPVNVEL------TILKLQHNNLTDTAWLLNY 253

Query: 365 VDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG 424
             +        ++ L  ++L  ++    V               ++ +  L +S+N L  
Sbjct: 254 PGLV-------EVDLSYNELEKIMYHPFVK--------------MQRLERLYISNNRLV- 291

Query: 425 NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 484
            +      +  +  L+LS+N L   +  +      +E+L L HN +   +       H+L
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTL 347

Query: 485 SKFDVSYNNLS 495
               +S+N+  
Sbjct: 348 KNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 2e-20
 Identities = 60/353 (16%), Positives = 123/353 (34%), Gaps = 41/353 (11%)

Query: 147 NYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILS 206
           N         +++D            +      ++   N+ +     + + +F  +++L+
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 207 MSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPN 265
           ++   +E      F     ++ L +  N +         N+  +  L L+ N L  S+P 
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPR 140

Query: 266 TFFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLGI 323
             F     L TL + +NN   RI     +  ++L+ L L +N L       +  L     
Sbjct: 141 GIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA-- 197

Query: 324 MDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD 383
            ++S+N L  ++   I           ++ +LD     +  V                  
Sbjct: 198 -NVSYNLL-STLAIPI-----------AVEELDASHNSINVVRGPVNVE----------- 233

Query: 384 LRWLVKQVEVNFMTKNRYESYKGVI-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLS 442
           L  L        +  N       ++    +  +DLS NEL   +      +Q +  L +S
Sbjct: 234 LTIL-------KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 443 YNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
            N L  ++      +  ++ LDLSHN L   +     +   L    + +N++ 
Sbjct: 287 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 55/310 (17%), Positives = 97/310 (31%), Gaps = 44/310 (14%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
           L     ++ LD SHN +           N +L +L L +N+ +         GL+ +D+S
Sbjct: 207 LAIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS 262

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQS 122
            N                     I  + F          MQ L  L +S N     L+  
Sbjct: 263 YNELE-----------------KIMYHPFVK--------MQRLERLYISNNRLV-ALNLY 296

Query: 123 LVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD 182
                 +L  LDLS+N+    +  N     +L+ LYLD+N     +K     +  L  L 
Sbjct: 297 G-QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT--LKNLT 351

Query: 183 ISNNRLSG-HIPSWMGNFSYLQILSMSKNLLEGNIPVQ-------FNDLLDLEILNISEN 234
           +S+N      + +   N +   +    ++                    LD  +  I+  
Sbjct: 352 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALT 411

Query: 235 NLSGSMIST-LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE 293
           ++   +       S+ + +    +                E L+   N     +    NE
Sbjct: 412 SVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNE 471

Query: 294 HSNLRALLLR 303
                 LL  
Sbjct: 472 QIQQEQLLQG 481

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 48/257 (18%), Positives = 89/257 (34%), Gaps = 19/257 (7%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQ-HGLLSLDI 61
           L +   L  +DLS+N+L             +LE LY+ NN      L G     L  LD+
Sbjct: 250 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
           S N     + +N      +L  + +  NS    +  S      L+ L +S N++     +
Sbjct: 309 SHNHLL-HVERNQPQ-FDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLR 363

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL 181
           +L  N         + ++ D     +Y     L     D  +      D LL+   L  +
Sbjct: 364 ALFRN-----VARPAVDDADQHCKIDYQLEHGLCCKESDKPY-----LDRLLQYIALTSV 413

Query: 182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
                R  G   +   +              +G +P+Q N+ L+ E+  +       +  
Sbjct: 414 VEKVQRAQGRCSA--TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNE 471

Query: 242 STLNLSSVEHLYLQNNA 258
                  ++ L+ + + 
Sbjct: 472 QIQQEQLLQGLHAEIDT 488

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (269), Expect = 1e-24
 Identities = 78/353 (22%), Positives = 128/353 (36%), Gaps = 86/353 (24%)

Query: 151 LTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
                +L +  +  +  + D L     +  L I +N L+  +P+       L+ L +S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 211 LLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG 270
            L  ++PV    LL+L I +    +L          S +  L++  N L  S+P      
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLT-SLPVLP--- 140

Query: 271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330
             L+ L + DN  +  +P      S L  L    N L   +P     L++L    +S N+
Sbjct: 141 PGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS-LPMLPSGLQEL---SVSDNQ 192

Query: 331 LYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ 390
           L  S+P   +           LY+L              Y N    L    S L+ L   
Sbjct: 193 L-ASLPTLPS----------ELYKLWA------------YNNRLTSLPALPSGLKEL--- 226

Query: 391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI 450
                                     +S N LT ++P    +L+    L +S N L+ S+
Sbjct: 227 -------------------------IVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SL 256

Query: 451 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQ 503
           P   S L    SL +  N+L  ++P  L  L S +  ++  N LS       +
Sbjct: 257 PMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (266), Expect = 2e-24
 Identities = 65/336 (19%), Positives = 108/336 (32%), Gaps = 69/336 (20%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
               L++  + L    P  L  +                         + +L I  N+ T
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAH-------------------------ITTLVIPDNNLT 74

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             LP        +L  + +S N    ++P     +  L        +     S       
Sbjct: 75  -SLPALPP----ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS------- 121

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             L  L +  N       P       LQ L + +N  +  +       +EL  L   NN+
Sbjct: 122 -GLCKLWIFGNQL--TSLPV--LPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQ 172

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
           L+  +P        LQ LS+S N L  ++P   ++L  L   N    +L          S
Sbjct: 173 LT-SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL------PS 221

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
            ++ L +  N L  S+P      S L+ L +  N  +  +P      S L +L +  N L
Sbjct: 222 GLKELIVSGNRL-TSLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQL 273

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343
              +P  L  L     ++L  N L           +
Sbjct: 274 TR-LPESLIHLSSETTVNLEGNPL-SERTLQALREI 307

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 73/316 (23%), Positives = 112/316 (35%), Gaps = 45/316 (14%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           ++  L +  N L     T L     +L  L +  N  +   L     GLL L I  N  T
Sbjct: 62  HITTLVIPDNNL-----TSLPALPPELRTLEVSGNQLT--SLPVLPPGLLELSIFSNPLT 114

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             LP     +   L  + I  N    ++P       GL+ L VS N        SL    
Sbjct: 115 -HLPA----LPSGLCKLWIFGNQLT-SLPVLP---PGLQELSVSDNQL-----ASLPALP 160

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             L  L   NN       P     + LQ L + +N  +  +       +EL  L   NNR
Sbjct: 161 SELCKLWAYNNQL--TSLPM--LPSGLQELSVSDNQLA-SLPTLP---SELYKLWAYNNR 212

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL--N 245
           L+  +P+       L+ L +S N L  ++P       +L+ L +S N L+     +L   
Sbjct: 213 LT-SLPALPSG---LKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-----SLPML 259

Query: 246 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305
            S +  L +  N L   +P +    S+  T++L  N  S R    + E ++         
Sbjct: 260 PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII 318

Query: 306 YLQGPIPHQLCRLRKL 321
                        R L
Sbjct: 319 RFDMAGASAPRETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 35/183 (19%), Positives = 71/183 (38%), Gaps = 24/183 (13%)

Query: 314 QLCRLRKLGIMDLSHNRLYGSIPACITNSL-FWKVGNESLYQLDEEGADVGNVDIRDYYN 372
           + C      ++++  + L  ++P C+   +    + + +L  L     ++  +++    N
Sbjct: 35  RACLNNGNAVLNVGESGL-TTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVS--GN 91

Query: 373 STVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD 432
               L +    L  L     +         +    +   +  L +  N+LT ++P     
Sbjct: 92  QLTSLPVLPPGLLEL----SIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVLPPG 142

Query: 433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 492
           LQ    L++S N L+ S+P   S L     L   +N+L   +P   + L  L    VS N
Sbjct: 143 LQE---LSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQEL---SVSDN 191

Query: 493 NLS 495
            L+
Sbjct: 192 QLA 194

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (259), Expect = 2e-24
 Identities = 63/341 (18%), Positives = 117/341 (34%), Gaps = 60/341 (17%)

Query: 8   NLKYLDLSHNKLA---GNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKN 64
           +L+ +  S   L     + P           +L L NN  +              +I   
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDT-------ALLDLQNNKIT--------------EIKDG 70

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
            F           L+ L  + +  N      P + A +  L  L +S N       + L 
Sbjct: 71  DFKN---------LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-----KELP 116

Query: 125 TNCF-SLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHF-SGKIKDGLLRS-TELM 179
                +L  L +  N          +   L Q+ ++ L  N   S  I++G  +   +L 
Sbjct: 117 EKMPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174

Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSG 238
            + I++  ++  IP   G    L  L +  N +   +       L +L  L +S N++S 
Sbjct: 175 YIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA 230

Query: 239 SMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG------RIPHQI 291
               +L N   +  L+L NN L   +P        ++ + L +NN S         P   
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 292 NEHSNLRALLLRANYLQ-GPIPHQLCR-LRKLGIMDLSHNR 330
            + ++   + L +N +Q   I     R +     + L + +
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 65/354 (18%), Positives = 114/354 (32%), Gaps = 89/354 (25%)

Query: 129 SLIWLDLSNNNFDGQIFPNYM-NLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNN 186
               LDL NN    +I      NL  L  L L NN  S KI  G      +L  L +S N
Sbjct: 53  DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST--- 243
           +L   +P        LQ L + +N +       FN L  + ++ +  N L  S I     
Sbjct: 111 QLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
             +  + ++ + +  +  +IP       +L  L L  N  +                 + 
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITK----------------VD 208

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
           A  L+G        L  L  + LS N +     + + N         +   L E      
Sbjct: 209 AASLKG--------LNNLAKLGLSFNSI-----SAVDNGSLA-----NTPHLRE------ 244

Query: 364 NVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT 423
                        L L+ + L     +V                  +++  + L +N ++
Sbjct: 245 -------------LHLNNNKL----VKVPGGL-----------ADHKYIQVVYLHNNNIS 276

Query: 424 G------NIPSEIGDLQNIHGLNLSYNFLSGSI--PESFSNLKMIESLDLSHNK 469
                    P       +  G++L  N +      P +F  + +  ++ L + K
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 55/352 (15%), Positives = 115/352 (32%), Gaps = 66/352 (18%)

Query: 153 QLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL 212
            L+++   +     K+   L   T   +LD+ NN+++        N   L  L +  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 213 EGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-S 271
               P  F  L+ LE L +S+N L    +      +++ L +  N +   +  + F G +
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK--ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLN 145

Query: 272 ALETLDLRDNNF-SGRIPHQI-NEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHN 329
            +  ++L  N   S  I +        L  + +    +          L +L    L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGN 202

Query: 330 RLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVK 389
           ++       +  +       + L  L +                   L L  + +  +  
Sbjct: 203 KI-----TKVDAASL-----KGLNNLAK-------------------LGLSFNSISAVDN 233

Query: 390 QVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS 449
               N                H+  L L++N+L   +P  + D + I  + L  N +S +
Sbjct: 234 GSLAN--------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-A 277

Query: 450 IPES-------FSNLKMIESLDLSHNKLN-GQIPPQL-TELHSLSKFDVSYN 492
           I  +        +       + L  N +   +I P     ++  +   +   
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           LDL +N++T     +  +L+N+H L L  N +S   P +F+ L  +E L LS N+L  ++
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115

Query: 475 PPQLTELHSLSKFDVSYNNLS 495
           P ++    +L +  V  N ++
Sbjct: 116 PEKM--PKTLQELRVHENEIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           +  S   L   +P ++    +   L+L  N ++      F NLK + +L L +NK++ +I
Sbjct: 36  VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KI 91

Query: 475 PPQ-LTELHSLSKFDVSYNNLS 495
            P     L  L +  +S N L 
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLK 113

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 46/252 (18%), Positives = 91/252 (36%), Gaps = 58/252 (23%)

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
            +  +   +  L   +P           LDL++N  +           NL  L+L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDI 367
               P     L KL  + LS N+L   +P  +  +L                        
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTL------------------------ 123

Query: 368 RDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT-GNI 426
                   +LR+ E+++  + K V                 L  M  ++L +N L    I
Sbjct: 124 -------QELRVHENEITKVRKSVFNG--------------LNQMIVVELGTNPLKSSGI 162

Query: 427 PSEI-GDLQNIHGLNLSYNFLSGSIPES-FSNLKMIESLDLSHNKLNGQIPPQ-LTELHS 483
            +     ++ +  + ++   ++ +IP+    +L     L L  NK+  ++    L  L++
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL---TELHLDGNKIT-KVDAASLKGLNN 217

Query: 484 LSKFDVSYNNLS 495
           L+K  +S+N++S
Sbjct: 218 LAKLGLSFNSIS 229

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 82/368 (22%), Positives = 145/368 (39%), Gaps = 37/368 (10%)

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSY---LQILSM 207
             +  + L  N  + ++ +       +L  L +        I +    F     L IL +
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSSLIILKL 86

Query: 208 SKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSI 263
             N     +    FN L +LE+L +++ NL G+++S      L+S+E L L++N +    
Sbjct: 87  DYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 264 PNTFFRG-SALETLDLRDNNFSGRIPHQI---NEHSNLRALLLRANYLQGPIPHQLC--- 316
           P +FF        LDL  N     I  +     +  +   L L +  LQ    + L    
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 317 -----RLRKLGIMDLSHNRLYGSIPACITNSLFW-KVGNESLYQLDEEGADVGNVDIRDY 370
                +   +  +DLS N    S+     +++   K+ +  L      G+  G+ + +D 
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 371 YNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEI 430
            N T +  L+ S ++     +  + +       +       +  L L+ NE+   I    
Sbjct: 265 DNFTFK-GLEASGVKTC--DLSKSKIFALLKSVFSH--FTDLEQLTLAQNEIN-KIDDNA 318

Query: 431 GD-LQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSKF 487
              L ++  LNLS NFL  SI    F NL  +E LDLS+N +   +  Q    L +L + 
Sbjct: 319 FWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKEL 376

Query: 488 DVSYNNLS 495
            +  N L 
Sbjct: 377 ALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.7 bits (233), Expect = 1e-20
 Identities = 62/347 (17%), Positives = 117/347 (33%), Gaps = 30/347 (8%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLS---LDISKN 64
           ++ Y+DLS N +A             L+ L +   +           GL S   L +  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSF-EGNIPSSI-AKMQGLRFLDVSTNNFAGELSQS 122
            F  +L       L  L  + +++ +     +  +    +  L  L +  NN       S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 123 LVTNCFSLIWLDLSNNNFD---GQIFPN-------YMNLTQLQLLYLDNNHFSGKIKDGL 172
              N      LDL+ N       +   N        + L+ + L  ++      +     
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 173 LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNIS 232
            ++T +  LD+S N     +      F      +  ++L+  N     +        +  
Sbjct: 209 FKNTSITTLDLSGNGFKESMA---KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 233 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI 291
                G     L  S V+   L  + +  ++  + F   + LE L L  N  + +I    
Sbjct: 266 NFTFKG-----LEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNA 318

Query: 292 NEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA 337
               ++L  L L  N+L          L KL ++DLS+N +  ++  
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGD 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 62/309 (20%), Positives = 121/309 (39%), Gaps = 38/309 (12%)

Query: 8   NLKYLDLSHNKLAGNF-PTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL---DISK 63
           NL+ L L+   L G        +  T LE+L L +N+    Q       +      D++ 
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

Query: 64  NSFT----GELPQNMGIVLQKLVYMN-----ISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
           N        +L    G     L   +     +++         +  K   +  LD+S N 
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 115 FAGELS------------QSLVTNCFSLIWLDLSNNNF---DGQIFPNYMNLTQLQLLYL 159
           F   ++            QSL+ +    +     + NF   D   F   +  + ++   L
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDL 282

Query: 160 DNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIP 217
             +     +   +    T+L  L ++ N ++  I        ++L  L++S+N L G+I 
Sbjct: 283 SKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSID 339

Query: 218 VQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALE 274
            + F +L  LE+L++S N++      +   L +++ L L  N L  S+P+  F   ++L+
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQ 398

Query: 275 TLDLRDNNF 283
            + L  N +
Sbjct: 399 KIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 82/425 (19%), Positives = 152/425 (35%), Gaps = 60/425 (14%)

Query: 81  LVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNF 140
           + Y+++S NS      +S +++Q L+FL V        +  +      SLI L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 141 ---DGQIFPNYMNLTQLQLLYLDNNHF-SGKIKDGLLRS-TELMVLDISNNRLSGHIPSW 195
              +   F     L  L++L L   +     +     +  T L +L + +N +    P+ 
Sbjct: 92  LQLETGAFN---GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 196 M-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYL 254
              N     +L ++ N ++ +I     + L          N  G   + L LSS+    +
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SIC---EEDLL---------NFQGKHFTLLRLSSITLQDM 195

Query: 255 QNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQ 314
               LG       F+ +++ TLDL  N F   +  +  +      +              
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ-----------SL 244

Query: 315 LCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNV--DIRDYYN 372
           +            H            N  F  +    +   D   + +  +   +  ++ 
Sbjct: 245 ILSNSYNMGSSFGHTNF-----KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299

Query: 373 STVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD 432
              QL L ++++  +                     L H+  L+LS N L  +I S + +
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWG--------------LTHLLKLNLSQNFLG-SIDSRMFE 344

Query: 433 -LQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSKFDV 489
            L  +  L+LSYN +  ++ + SF  L  ++ L L  N+L   +P      L SL K  +
Sbjct: 345 NLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWL 402

Query: 490 SYNNL 494
             N  
Sbjct: 403 HTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 5e-17
 Identities = 81/447 (18%), Positives = 143/447 (31%), Gaps = 111/447 (24%)

Query: 58  SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFA 116
            +D+S NS   EL +     LQ L ++ + + +    I ++    +  L  L +  N F 
Sbjct: 34  YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 117 GELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLR 174
            +L         +L  L L+  N DG +        LT L++L L +N+           
Sbjct: 93  -QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 175 S-TELMVLDISNNRLSGHIPSWMGNFSYL-------------QILSMSKNLLEGNIPVQF 220
           +     VLD++ N++   I     +                  +  M++  L        
Sbjct: 152 NMRRFHVLDLTFNKVK-SICE--EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 221 NDLLDLEILNISENNL----SGSMISTLNLSSVEHLYLQNNALGG---------SIPNTF 267
                +  L++S N      +      +  + ++ L L N+   G            N  
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 268 FRG---SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIM 324
           F+G   S ++T DL  +     +   +                          L +L   
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSV--------------------FSHFTDLEQL--- 304

Query: 325 DLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLR-LDESD 383
            L+ N +   I      + FW + +  L +L+               N    L  +D   
Sbjct: 305 TLAQNEI-NKIDD----NAFWGLTH--LLKLNL------------SQN---FLGSIDSRM 342

Query: 384 LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD-LQNIHGLNLS 442
              L K                   LE    LDLS N +   +  +    L N+  L L 
Sbjct: 343 FENLDK-------------------LEV---LDLSYNHIR-ALGDQSFLGLPNLKELALD 379

Query: 443 YNFLSGSIPES-FSNLKMIESLDLSHN 468
            N L  S+P+  F  L  ++ + L  N
Sbjct: 380 TNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 26/204 (12%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWL--LENNTKLEVLYLINNSFSGFQLTGAQ------- 53
                ++  LDLS N    +           TK++ L L N+   G              
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 54  -------HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGL 105
                   G+ + D+SK+     L +++      L  + +++N     I  +    +  L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325

Query: 106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNH 163
             L++S N   G +   +  N   L  LDLS N+   +   +     L  L+ L LD N 
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI--RALGDQSFLGLPNLKELALDTNQ 382

Query: 164 FSGKIKDGLLRS-TELMVLDISNN 186
               + DG+    T L  + +  N
Sbjct: 383 LK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLS 466
           +  H+  +DLS N +     +    LQ++  L +        I   +F  L  +  L L 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 467 HNKLNGQIPPQ-LTELHSLSKFDVSYNNL-SGPIPD 500
           +N+   Q+       L +L    ++  NL    +  
Sbjct: 88  YNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 55/278 (19%)

Query: 247 SSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRA 304
           + V ++ L  N++   +  T F     L+ L +        I +      S+L  L L  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 305 NYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGN 364
           N            L  L ++ L+   L G+    ++ + F       L  L+        
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGA---VLSGNFFKP-----LTSLEM------- 133

Query: 365 VDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG 424
                       L L +++++ +        M +                LDL+ N++  
Sbjct: 134 ------------LVLRDNNIKKIQPASFFLNMRR----------FHV---LDLTFNKVK- 167

Query: 425 NIPSEIGD-----------LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
           +I  E              L +I   +++  +L      +      I +LDLS N     
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 474 IPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESS 511
           +  +  +  + +K      + S  +      + F +  
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.9 bits (239), Expect = 8e-22
 Identities = 51/291 (17%), Positives = 103/291 (35%), Gaps = 29/291 (9%)

Query: 55  GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
               LD+  N  + EL ++    LQ L  + +  N        + + ++ L+ L +S N+
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 115 FAGELSQSLVTNCF-SLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHF-SGKIKD 170
                   +  N   SL+ L + +N    +  P  +   L  +  + +  N   +   + 
Sbjct: 114 L-----VEIPPNLPSSLVELRIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 171 GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEIL 229
           G     +L  L IS  +L+  IP        L  L +  N ++  I ++       L  L
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222

Query: 230 NISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIP 288
            +  N +      +L  L ++  L+L NN L   +P        L+ + L  NN + ++ 
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVG 280

Query: 289 -------HQINEHSNLRALLLRANYLQGPI--PHQLCRLRKLGIMDLSHNR 330
                      + +    + L  N +      P     +     +   + +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 62/265 (23%), Positives = 96/265 (36%), Gaps = 15/265 (5%)

Query: 95  IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPN-YMNLTQ 153
           +P  I+       LD+  N+ + EL +        L  L L NN    +I    +  L +
Sbjct: 48  VPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103

Query: 154 LQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL- 212
           LQ LY+  NH   +I   L  S  L+ L I +NR+             +  + M  N L 
Sbjct: 104 LQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 213 EGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-S 271
                    D L L  L ISE  L+   I      ++  L+L +N +  +I        S
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLT--GIPKDLPETLNELHLDHNKIQ-AIELEDLLRYS 217

Query: 272 ALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
            L  L L  N         ++    LR L L  N L   +P  L  L+ L ++ L  N +
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNI 276

Query: 332 YGSIPACITNSLFWKVGNESLYQLD 356
              +       + + V       + 
Sbjct: 277 -TKVGVNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 70/353 (19%), Positives = 109/353 (30%), Gaps = 88/353 (24%)

Query: 129 SLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNN 186
               LDL NN+   ++  + +  L  L  L L NN  S KI +       +L  L IS N
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL 246
            L   IP      S L  L +  N                 I  + +   SG       L
Sbjct: 113 HLV-EIPP--NLPSSLVELRIHDN----------------RIRKVPKGVFSG-------L 146

Query: 247 SSVEHLYLQNNALG-GSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305
            ++  + +  N L         F G  L  L + +   +  IP  +     L  L L  N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHN 203

Query: 306 YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNV 365
            +Q      L R  KL  + L HN++       I N          L  L E        
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQI-----RMIENGSLS-----FLPTLRE-------- 245

Query: 366 DIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGN 425
                      L LD + L     +V                 L+ +  + L +N +T  
Sbjct: 246 -----------LHLDNNKL----SRVPAGLPD-----------LKLLQVVYLHTNNIT-K 278

Query: 426 IPSEI-------GDLQNIHGLNLSYNFLSGSI--PESFSNLKMIESLDLSHNK 469
           +                 +G++L  N +      P +F  +    ++   + K
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 57/346 (16%), Positives = 115/346 (33%), Gaps = 66/346 (19%)

Query: 153 QLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL 212
            L+++   +      +   +  S +  +LD+ NN +S           +L  L +  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 213 EGNIPVQ-FNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGS 271
              I  + F+ L  L+ L IS+N+L    I     SS+  L + +N +       F    
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV--EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 272 ALETLDLRDNNF-SGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330
            +  +++  N   +        +   L  L +    L G IP  L     L  + L HN+
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNK 204

Query: 331 LYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ 390
           +       I              +L                     L L  + +R +   
Sbjct: 205 I-----QAIELEDL-----LRYSKLYR-------------------LGLGHNQIRMIENG 235

Query: 391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI 450
                             L  +  L L +N+L+  +P+ + DL+ +  + L  N ++   
Sbjct: 236 SLSF--------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 451 PESFSNLKM------IESLDLSHNKL-NGQIPPQ----LTELHSLS 485
              F  +           + L +N +   ++ P     +T+  ++ 
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 7e-14
 Identities = 57/323 (17%), Positives = 98/323 (30%), Gaps = 83/323 (25%)

Query: 177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236
            L V+  S+  L   +P  +       +L +  N +       F  L  L  L +  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 237 SGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE 293
           S   I       L  ++ LY+  N L   IP        L  L + DN    ++P     
Sbjct: 91  S--KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIR-KVP----- 139

Query: 294 HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLY 353
                                   LR +  +++  N L  S         F  +    L 
Sbjct: 140 ------------------KGVFSGLRNMNCIEMGGNPLENS---GFEPGAFDGL---KLN 175

Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA 413
            L                                        +++ +       + E + 
Sbjct: 176 YLR---------------------------------------ISEAKLTGIPKDLPETLN 196

Query: 414 GLDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNG 472
            L L  N++   I  E       ++ L L +N +      S S L  +  L L +NKL+ 
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 473 QIPPQLTELHSLSKFDVSYNNLS 495
           ++P  L +L  L    +  NN++
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT 277

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 9e-22
 Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 30/257 (11%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +   L+L  NKL  + P  + +  T+L  L L +N  S                   S  
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS------------FKGCCSQSDF 75

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
           G            L Y+++S N     + S+   ++ L  LD   +N       S+  + 
Sbjct: 76  G---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 128 FSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDIS 184
            +LI+LD+S+ +   ++  N +   L+ L++L +  N F       +      L  LD+S
Sbjct: 126 RNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
             +L    P+   + S LQ+L+MS N         +  L  L++L+ S N++  S    L
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 245 N--LSSVEHLYLQNNAL 259
               SS+  L L  N  
Sbjct: 244 QHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 3e-21
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 14/255 (5%)

Query: 58  SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFA- 116
            +  +    T  +P     +      + +  N  +        K+  L  L +S+N  + 
Sbjct: 11  EIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 117 GELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS- 175
                       SL +LDLS N     +  N++ L QL+ L   +++     +  +  S 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN-LLEGNIPVQFNDLLDLEILNISEN 234
             L+ LDIS+              S L++L M+ N   E  +P  F +L +L  L++S+ 
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 235 NLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQIN 292
            L     +   +LSS++ L + +N    S+    ++  ++L+ LD   N+       Q  
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQEL 243

Query: 293 EH--SNLRALLLRAN 305
           +H  S+L  L L  N
Sbjct: 244 QHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 6e-20
 Identities = 49/210 (23%), Positives = 76/210 (36%), Gaps = 10/210 (4%)

Query: 129 SLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGK-IKDGLLRS-TELMVLDISN 185
           S   L+L +N     +    +  LTQL  L L +N  S K          T L  LD+S 
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL 244
           N +   + S       L+ L    + L+       F  L +L  L+IS  +   +     
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 245 -NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALL 301
             LSS+E L +  N+   +     F     L  LDL       ++        S+L+ L 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
           +  N            L  L ++D S N +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 14/189 (7%)

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF---SYLQILSM 207
           +    L L++N     +  G+    T+L  L +S+N LS        +    + L+ L +
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDL 85

Query: 208 SKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSIP 264
           S N +   +   F  L  LE L+   +NL   M      L+L ++ +L + +        
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAF 142

Query: 265 NTFFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLG 322
           N  F G S+LE L +  N+F       I     NL  L L    L+   P     L  L 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 323 IMDLSHNRL 331
           ++++SHN  
Sbjct: 203 VLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 47/299 (15%), Positives = 99/299 (33%), Gaps = 57/299 (19%)

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
           +  ++  L+  +P+  G  S    L +  N L+      F+ L  L  L++S N LS   
Sbjct: 12  IRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 241 IST---LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI-NEHSN 296
             +      +S+++L L  N +  ++ + F     LE LD + +N        +     N
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 297 LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLD 356
           L  L +   + +         L  L ++ ++ N    +        +F ++ N       
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----DIFTELRN------- 176

Query: 357 EEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGL- 415
                                      L +L        +++ + E         ++ L 
Sbjct: 177 ---------------------------LTFL-------DLSQCQLEQLSPTAFNSLSSLQ 202

Query: 416 --DLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNL-KMIESLDLSHNKLN 471
             ++S N            L ++  L+ S N +  S  +   +    +  L+L+ N   
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 55/262 (20%), Positives = 94/262 (35%), Gaps = 41/262 (15%)

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGR-IPHQINEH-SNLRALLLRA 304
           SS   L L++N L       F + + L  L L  N  S +    Q +   ++L+ L L  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 305 NYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGN 364
           N +   +      L +L  +D  H+ L   +      S+F  + N  L  LD        
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNL-KQMSE---FSVFLSLRN--LIYLDI------- 133

Query: 365 VDIRDYYNSTVQLRLDE----SDLRWLVKQVEVNFMTKNRY-ESYKGVILEHMAG---LD 416
                 +  T           S L  L        M  N + E++   I   +     LD
Sbjct: 134 -----SHTHTRVAFNGIFNGLSSLEVL-------KMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 417 LSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 475
           LS  +L   +       L ++  LN+S+N         +  L  ++ LD S N +     
Sbjct: 182 LSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSK 239

Query: 476 PQLTE--LHSLSKFDVSYNNLS 495
            Q  +    SL+  +++ N+ +
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 30/186 (16%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            L++LD  H+ L       +  +   L  L + +                        F 
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--------------VAFNGIFN 147

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLVTN 126
           G         L  L  + ++ NSF+ N    I  +++ L FLD+S      +LS +   +
Sbjct: 148 G---------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNS 197

Query: 127 CFSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRS--TELMVLDI 183
             SL  L++S+NNF   +    Y  L  LQ+L    NH     K   L+   + L  L++
Sbjct: 198 LSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

Query: 184 SNNRLS 189
           + N  +
Sbjct: 256 TQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 46/229 (20%), Positives = 82/229 (35%), Gaps = 33/229 (14%)

Query: 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG 333
             +       +  +P  I   S+   L L +N LQ        +L +L  + LS N L  
Sbjct: 10  TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEV 393
                  +   +   +  L  L     D+    +    ++ + L      L  L      
Sbjct: 67  KG---CCSQSDFGTTS--LKYL-----DLSFNGVITMSSNFLGL----EQLEHL------ 106

Query: 394 NFMTKNRYES--YKGVI--LEHMAGLDLSSNELTGNIPSEI-GDLQNIHGLNLSYN-FLS 447
                +  +      V   L ++  LD+S         + I   L ++  L ++ N F  
Sbjct: 107 -DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 448 GSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSKFDVSYNNLS 495
             +P+ F+ L+ +  LDLS  +L  Q+ P     L SL   ++S+NN  
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 23/139 (16%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
                +L+ L ++ N    NF   +      L  L L                     +S
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------------QLS 191

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQS 122
             +F           L  L  +N+S N+F          +  L+ LD S N+      Q 
Sbjct: 192 PTAFNS---------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 123 LVTNCFSLIWLDLSNNNFD 141
           L     SL +L+L+ N+F 
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLS--GSIPESFSNLKMIESLDL 465
           I      L+L SN+L          L  +  L+LS N LS  G   +S      ++ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 466 SHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
           S N +   +      L  L   D  ++NL   + +   F 
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFL 123

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 56/242 (23%), Positives = 90/242 (37%), Gaps = 17/242 (7%)

Query: 95  IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN---FDGQIFPNYMNL 151
           +P  I      R+L++  NN    +      +   L  L L  N+    +   F     L
Sbjct: 69  VPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG---L 122

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPS-WMGNFSYLQILSMSK 209
             L  L L +N  +  I  G     ++L  L + NN +   IPS        L  L + +
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180

Query: 210 NLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTF 267
                 I    F  L +L+ LN+   N+    +  L  L  +E L +  N      P +F
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 268 FRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS 327
              S+L+ L + ++  S    +  +  ++L  L L  N L          LR L  + L 
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298

Query: 328 HN 329
           HN
Sbjct: 299 HN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.7 bits (220), Expect = 6e-19
 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 24/215 (11%)

Query: 129 SLIWLDLSNNNF---DGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDIS 184
           +  +L+L  NN        F +   L  L++L L  N    +I+ G       L  L++ 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRH---LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF 131

Query: 185 NNRLSGHIPS-WMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMIS 242
           +N L+  IPS      S L+ L +  N +E +IP   FN +  L  L++ E       + 
Sbjct: 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK----KLE 185

Query: 243 TL------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSN 296
            +       L ++++L L    +   +P        LE L++  N+F    P   +  S+
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 297 LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
           L+ L +  + +     +    L  L  ++L+HN L
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 8e-18
 Identities = 60/280 (21%), Positives = 92/280 (32%), Gaps = 57/280 (20%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           N +YL+L  N +          +   LEVL L  N      +           I   +F 
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN-----SIR---------QIEVGAFN 120

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLVTN 126
           G         L  L  + +  N     IPS     +  LR L +  N     +       
Sbjct: 121 G---------LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNR 169

Query: 127 CFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN 186
             SL+ LDL                   +L Y+    F G      L +  L  L++   
Sbjct: 170 VPSLMRLDLGELK---------------KLEYISEGAFEG------LFN--LKYLNLGMC 206

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST--- 243
            +   +P+       L+ L MS N      P  F+ L  L+ L +  + +S  +I     
Sbjct: 207 NIK-DMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS--LIERNAF 262

Query: 244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNF 283
             L+S+  L L +N L     + F     L  L L  N +
Sbjct: 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 56/238 (23%), Positives = 90/238 (37%), Gaps = 34/238 (14%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
            RH  +L+ L L  N +              L  L L +N      LT          I 
Sbjct: 95  FRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN-----WLT---------VIP 139

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQ 121
             +F           L KL  + +  N  E +IPS    ++  L  LD+        +S+
Sbjct: 140 SGAFEY---------LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMV 180
                 F+L +L+L   N   +  PN   L  L+ L +  NHF  +I+ G     + L  
Sbjct: 190 GAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKK 246

Query: 181 LDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNL 236
           L + N+++S  I        + L  L+++ N L  ++P   F  L  L  L++  N  
Sbjct: 247 LWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 48/251 (19%)

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH-SNLRALLLRAN 305
           S+  +L L  N +     +TF     LE L L  N+   +I        ++L  L L  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 306 YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNV 365
           +L          L KL  + L +N +  SIP+      F       +  L          
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPI-ESIPS----YAF-----NRVPSLMR-------- 175

Query: 366 DIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGN 425
                      L L E              +      +++G  L ++  L+L    +  +
Sbjct: 176 -----------LDLGEL-----------KKLEYISEGAFEG--LFNLKYLNLGMCNIK-D 210

Query: 426 IPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSL 484
           +P+ +  L  +  L +S N      P SF  L  ++ L + +++++  I       L SL
Sbjct: 211 MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASL 268

Query: 485 SKFDVSYNNLS 495
            + ++++NNLS
Sbjct: 269 VELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 8e-08
 Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 51/227 (22%)

Query: 271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330
           +    +       S  +P  I   SN R L L  N +Q         L  L ++ L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 331 LYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ 390
           +       I    F       L  L+                    L L ++ L  +   
Sbjct: 111 I-----RQIEVGAFN-----GLASLNT-------------------LELFDNWLTVIPSG 141

Query: 391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEI-GDLQNIHGLNLS-YNFLSG 448
                             L  +  L L +N +  +IPS     + ++  L+L     L  
Sbjct: 142 AFEY--------------LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 449 SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
               +F  L  ++ L+L    +  +  P LT L  L + ++S N+  
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 2/134 (1%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +L  LDL   K          E    L+ L L   +           GL  L++S N F 
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP 231

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
            E+       L  L  + +  +       ++   +  L  L+++ NN +  L   L T  
Sbjct: 232 -EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPL 289

Query: 128 FSLIWLDLSNNNFD 141
             L+ L L +N ++
Sbjct: 290 RYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 415 LDLSSNELTGNIPSE-IGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
           L++S N     I       L ++  L +  + +S     +F  L  +  L+L+HN L+  
Sbjct: 223 LEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280

Query: 474 IPPQ-LTELHSLSKFDVSYNNL 494
           +P    T L  L +  + +N  
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 18/212 (8%)

Query: 129 SLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNN 186
           +   L+L  N     I  N + +L  L++L L  NH    I+ G       L  L++ +N
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL- 244
           RL+          S L+ L +  N +E +IP   FN +  L  L++ E       +S + 
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK----RLSYIS 177

Query: 245 -----NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA 299
                 LS++ +L L    L   IP        L+ LDL  N+ S   P       +L+ 
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 300 LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
           L +  + +Q    +    L+ L  ++L+HN L
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 8e-19
 Identities = 58/246 (23%), Positives = 93/246 (37%), Gaps = 25/246 (10%)

Query: 95  IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN---FDGQIFPNYMNL 151
           +P  I+     R L++  N     +  +   +   L  L LS N+    +   F     L
Sbjct: 58  VPDGIST--NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG---L 111

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSY---LQILSM 207
             L  L L +N  +  I +G     ++L  L + NN +   IPS    F+    L+ L +
Sbjct: 112 ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPS--YAFNRIPSLRRLDL 167

Query: 208 SK-NLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 264
            +   L   I    F  L +L  LN++  NL    I  L  L  ++ L L  N L  +I 
Sbjct: 168 GELKRLS-YISEGAFEGLSNLRYLNLAMCNLR--EIPNLTPLIKLDELDLSGNHL-SAIR 223

Query: 265 NTFFRG-SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGI 323
              F+G   L+ L +  +       +  +   +L  + L  N L          L  L  
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

Query: 324 MDLSHN 329
           + L HN
Sbjct: 284 IHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 56/280 (20%), Positives = 93/280 (33%), Gaps = 57/280 (20%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           N + L+L  N++         ++   LE+L L  N      +           I   +F 
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN-----HIR---------TIEIGAFN 109

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLVTN 126
           G         L  L  + +  N     IP+     +  L+ L +  N     +       
Sbjct: 110 G---------LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 127 CFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN 186
             SL  LDL                   +L Y+    F G         + L  L+++  
Sbjct: 159 IPSLRRLDLGELK---------------RLSYISEGAFEG--------LSNLRYLNLAMC 195

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST--- 243
            L   IP+       L  L +S N L    P  F  L+ L+ L + ++ +   +I     
Sbjct: 196 NLR-EIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ--VIERNAF 251

Query: 244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNF 283
            NL S+  + L +N L     + F     LE + L  N +
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 55/238 (23%), Positives = 90/238 (37%), Gaps = 34/238 (14%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
            +H  +L+ L LS N +              L  L L +N     +LT          I 
Sbjct: 84  FKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN-----RLT---------TIP 128

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQ 121
             +F           L KL  + +  N  E +IPS    ++  LR LD+        +S+
Sbjct: 129 NGAFVY---------LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 122 SLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMV 180
                  +L +L+L+  N   +  PN   L +L  L L  NH S  I+ G  +    L  
Sbjct: 179 GAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQK 235

Query: 181 LDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNL 236
           L +  +++   I      N   L  ++++ N L   +P   F  L  LE +++  N  
Sbjct: 236 LWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 55/276 (19%)

Query: 225 DLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNN 282
           +  +LN+ EN +    +++  +L  +E L L  N +  +I    F G + L TL+L DN 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 283 FSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSH-NRLYGSIPACIT 340
            +  IP+    + S L+ L LR N ++    +   R+  L  +DL    RL     + I+
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-----SYIS 177

Query: 341 NSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNR 400
              F     E L  L                     L L   +LR      E+  +T   
Sbjct: 178 EGAF-----EGLSNLRY-------------------LNLAMCNLR------EIPNLTP-- 205

Query: 401 YESYKGVILEHMAGLDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKM 459
                   L  +  LDLS N L+  I       L ++  L +  + +      +F NL+ 
Sbjct: 206 --------LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 460 IESLDLSHNKLNGQIPPQ-LTELHSLSKFDVSYNNL 494
           +  ++L+HN L   +P    T LH L +  + +N  
Sbjct: 257 LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 56/250 (22%), Positives = 92/250 (36%), Gaps = 46/250 (18%)

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
           ++   L L  N +     N+F     LE L L  N+         N  +NL  L L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVD 366
           L          L KL  + L +N +  SIP+      F       +  L           
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPI-ESIPS----YAF-----NRIPSLRR--------- 164

Query: 367 IRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNI 426
                     L L E              ++     +++G  L ++  L+L+   L   I
Sbjct: 165 ----------LDLGEL-----------KRLSYISEGAFEG--LSNLRYLNLAMCNLR-EI 200

Query: 427 PSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLS 485
           P+ +  L  +  L+LS N LS   P SF  L  ++ L +  +++   I       L SL 
Sbjct: 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLV 258

Query: 486 KFDVSYNNLS 495
           + ++++NNL+
Sbjct: 259 EINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 2/134 (1%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +L+ LDL   K          E  + L  L L   +            L  LD+S N  +
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS 220

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             +       L  L  + + ++  +    ++   +Q L  ++++ NN    L   L T  
Sbjct: 221 -AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPL 278

Query: 128 FSLIWLDLSNNNFD 141
             L  + L +N ++
Sbjct: 279 HHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           +      L   +P  I    N   LNL  N +      SF +L+ +E L LS N +   I
Sbjct: 48  VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI 103

Query: 475 PPQ-LTELHSLSKFDVSYNNLS 495
                  L +L+  ++  N L+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT 125

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 61/356 (17%), Positives = 119/356 (33%), Gaps = 24/356 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ---LTGAQHGLLSLDISKN 64
            LK+L LS   L  +    +   N    +L L            L       L +    N
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN--NFAGELSQS 122
                +       +  L   NI     +      ++ +  L+     +N      E + +
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 123 LVTNCFSLIW------LDLSNNNFDGQIFPNYM-----NLTQLQLLYLDNNHFSGKIKDG 171
                  L+W        +SN    GQ+          +L  L +  + ++ F       
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 172 LLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNI 231
               + + + + + +             S    L  S NLL   +      L +LE L +
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 232 SENNLS---GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRI 287
             N L         T  + S++ L +  N++             +L +L++  N  +  I
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 288 PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343
              +     ++ L L +N ++  IP Q+ +L  L  ++++ N+L  S+P  I + L
Sbjct: 416 FRCL--PPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQL-KSVPDGIFDRL 467

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.2 bits (221), Expect = 6e-19
 Identities = 86/509 (16%), Positives = 166/509 (32%), Gaps = 94/509 (18%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
               L++S N ++    T  + + +KL +L + +N                  +  + F 
Sbjct: 22  KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ--------------YLDISVFK 66

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                      Q+L Y+++S N     I         L+ LD+S N F          N 
Sbjct: 67  F---------NQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNM 114

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI---S 184
             L +L LS  + +        +L   ++L +    +  K     L+      L I   +
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDL-----------LDLEILNISE 233
           N      +   +   + L++ ++   L +       + L           L L  +  + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 234 NNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGS-----ALETLDLRDNNFSGRIP 288
           N+    ++  +  ++V +  + N  L G +    F  S     AL    +  + F     
Sbjct: 235 NSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 289 HQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVG 348
           +     SN+       +  +        ++     +D S+N L           L     
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHL----- 347

Query: 349 NESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEV-NFMTKNRYESYKGV 407
                                       L L  + L+ L K  E+   M   +       
Sbjct: 348 -----------------------TELETLILQMNQLKELSKIAEMTTQMKSLQQ------ 378

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGD-LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLS 466
                  LD+S N ++ +         +++  LN+S N L+ +I         I+ LDL 
Sbjct: 379 -------LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLH 429

Query: 467 HNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
            NK+   IP Q+ +L +L + +V+ N L 
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 84/482 (17%), Positives = 171/482 (35%), Gaps = 70/482 (14%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            L+ L +SHN++       + + N +LE L L +N           + L  LD+S N+F 
Sbjct: 46  KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN-LKHLDLSFNAFD 103

Query: 68  GELPQNMGIV-LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTN 126
             LP       + +L ++ +S    E +    IA +   + L V    +  +     + +
Sbjct: 104 -ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162

Query: 127 CF--SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD------GLLRSTEL 178
               SL  +  +N  F   +  +   +  L+L  +       K          L  + +L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 179 MVLDISNNRLSGHIPSWMGNF---SYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
             L ++N   + +    +      + +   S+S   L+G +  +  D     +  +S + 
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 236 LSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPH 289
           +   +            S++       +           + S    LD  +N  +  +  
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 290 QINEHSNLRALLLRANYLQ--GPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347
                + L  L+L+ N L+    I     +++ L  +D+S N +         +      
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT---- 398

Query: 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407
             +SL  L+               N      L ++  R L  +++V              
Sbjct: 399 --KSLLSLNM------------SSN-----ILTDTIFRCLPPRIKV-------------- 425

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLS 466
                  LDL SN++  +IP ++  L+ +  LN++ N L  S+P+  F  L  ++ + L 
Sbjct: 426 -------LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476

Query: 467 HN 468
            N
Sbjct: 477 TN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 3e-16
 Identities = 50/348 (14%), Positives = 113/348 (32%), Gaps = 11/348 (3%)

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
            +  +L +  N+ S ++    + S ++L +L IS+NR+     S       L+ L +S N
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 211 LLEGNIPVQFNDLLDLEILNISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFF 268
            L     +  +  ++L+ L++S N      I     N+S ++ L L    L  S      
Sbjct: 80  KLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 269 RGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSH 328
             +  + L +    +            +     L   +      H +  +    + +L  
Sbjct: 137 HLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 329 NRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWL- 387
           + +   +     +     +              + N++        +   +  + + +  
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 388 VKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLS 447
           +  V++      R   Y G  L+ ++   + S+              N++  N + +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 448 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
                  S +     LD S+N L   +      L  L    +  N L 
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 5e-16
 Identities = 58/277 (20%), Positives = 101/277 (36%), Gaps = 26/277 (9%)

Query: 22  NFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTG----ELPQNMGIV 77
              T    +N  L  +    NSF           +    IS     G          G  
Sbjct: 215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 78  LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFS----LIWL 133
           L+ L    +  + F             +   + + +      ++ +   C S     + L
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-----TRMVHMLCPSKISPFLHL 329

Query: 134 DLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS--GKIKDGLLRSTELMVLDISNNRLSGH 191
           D SNN     +F N  +LT+L+ L L  N      KI +   +   L  LDIS N +S  
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 192 IP----SWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
                 SW  +   L  L+MS N+L   I         +++L++  N +       + L 
Sbjct: 390 EKKGDCSWTKS---LLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLE 444

Query: 248 SVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNF 283
           +++ L + +N L  S+P+  F   ++L+ + L  N +
Sbjct: 445 ALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           L++S N ++    S+I  L  +  L +S+N +       F   + +E LDLSHNKL   I
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-I 84

Query: 475 PPQLTELHSLSKFDVSYNNLSGPIPDKEQFS 505
                   +L   D+S+N     +P  ++F 
Sbjct: 85  SCH--PTVNLKHLDLSFNAFDA-LPICKEFG 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 27/134 (20%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +L+ LD+S N ++ +           L  L + +N  +          +  LD+  N   
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                                     +IP  + K++ L+ L+V++N     +   +    
Sbjct: 435 --------------------------SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRL 467

Query: 128 FSLIWLDLSNNNFD 141
            SL  + L  N +D
Sbjct: 468 TSLQKIWLHTNPWD 481

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 50/220 (22%), Positives = 78/220 (35%), Gaps = 19/220 (8%)

Query: 95  IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNF---DGQIFPNYMNL 151
           +P  I      + + +  N  +  +  +    C +L  L L +N     D   F     L
Sbjct: 26  VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAF---TGL 79

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPS-WMGNFSYLQILSMSK 209
             L+ L L +N     +          L  L +    L   +        + LQ L +  
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQD 138

Query: 210 NLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTF 267
           N L+  +P   F DL +L  L +  N +S         L S++ L L  N +   +    
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHA 196

Query: 268 FRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRAN 305
           FR    L TL L  NN S  +P +       L+ L L  N
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 17/234 (7%)

Query: 57  LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFA 116
           ++    +      +P  +    Q++    +  N       +S    + L  L + +N  A
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 117 GELSQSLVTNCFSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
             +  +  T    L  LDLS+N     + P  +  L +L  L+LD      ++  GL R 
Sbjct: 70  -RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 127

Query: 176 -TELMVLDISNNRLSGHIPS-WMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233
              L  L + +N L   +P     +   L  L +  N +       F  L  L+ L + +
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 234 NNLSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNF 283
           N ++   +      +L  +  LYL  N L  ++P        AL+ L L DN +
Sbjct: 187 NRVA--HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 49/214 (22%), Positives = 79/214 (36%), Gaps = 24/214 (11%)

Query: 129 SLIWLDLSNNNF---DGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDIS 184
           +   + L  N         F        L +L+L +N  + +I          L  LD+S
Sbjct: 33  ASQRIFLHGNRISHVPAASFRA---CRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88

Query: 185 NNRLSGHIPSWMGNFSY---LQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSM 240
           +N     +      F     L  L + +  L+  +    F  L  L+ L + +N L    
Sbjct: 89  DNAQLRSVDP--ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL--QA 143

Query: 241 IST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEH-S 295
           +      +L ++ HL+L  N +  S+P   FRG  +L+ L L  N  +  +         
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLG 201

Query: 296 NLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHN 329
            L  L L AN L       L  LR L  + L+ N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
              Q ++L  N  S  +     R+   L +L + +N L+    +     + L+ L +S N
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 211 LLEGNIPVQ-FNDLLDLEILNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSIPNT 266
               ++    F+ L  L  L++    L    +       L+++++LYLQ+NAL  ++P+ 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 267 FFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIM 324
            FR    L  L L  N  S  +P +      +L  LLL  N +    PH    L +L  +
Sbjct: 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 325 DLSHNRL 331
            L  N L
Sbjct: 207 YLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 14/210 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLS---LDISKN 64
             + + L  N+++ + P         L +L+L +N  +      A  GL     LD+S N
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDN 90

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSL 123
           +    +       L +L  +++ +   +  +   +   +  L++L +  N     L    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 124 VTNCFSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRS-TELMV 180
             +  +L  L L  N       P      L  L  L L  N  +  +     R    LM 
Sbjct: 149 FRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMT 205

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKN 210
           L +  N LS      +     LQ L ++ N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 40/166 (24%), Positives = 62/166 (37%), Gaps = 16/166 (9%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISE 233
                 + +  NR+S    +       L IL +  N+L   I    F  L  LE L++S+
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 234 NNLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGR 286
           N      + ++       L  +  L+L    L   +    FRG +AL+ L L+DN     
Sbjct: 90  NAQ----LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 287 IPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
           +P        NL  L L  N +          L  L  + L  NR+
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 7/151 (4%)

Query: 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST 243
               L   +P   G  +  Q + +  N +       F    +L IL +  N L+    + 
Sbjct: 19  PQQGLQ-AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 244 L-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI-NEHSNLRAL 300
              L+ +E L L +NA   S+    F G   L TL L        +   +    + L+ L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134

Query: 301 LLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
            L+ N LQ         L  L  + L  NR+
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 49/249 (19%), Positives = 81/249 (32%), Gaps = 51/249 (20%)

Query: 225 DLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNN 282
             + + +  N +S    ++     ++  L+L +N L   I    F G + LE LDL DN 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 283 FSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN 341
               +          L  L L    LQ   P     L  L  + L  N L  ++P     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPD---- 146

Query: 342 SLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRY 401
             F       L  L                     L L  + +  + ++           
Sbjct: 147 DTF-----RDLGNLTH-------------------LFLHGNRISSVPERAFRG------- 175

Query: 402 ESYKGVILEHMAGLDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPES-FSNLKM 459
                  L  +  L L  N +  ++      DL  +  L L  N LS ++P    + L+ 
Sbjct: 176 -------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRA 226

Query: 460 IESLDLSHN 468
           ++ L L+ N
Sbjct: 227 LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 46/239 (19%), Positives = 72/239 (30%), Gaps = 54/239 (22%)

Query: 262 SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKL 321
           ++P         + + L  N  S           NL  L L +N L          L  L
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 322 GIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDE 381
             +DLS N    S+      + F  +G                                 
Sbjct: 83  EQLDLSDNAQLRSVDP----ATFHGLGR-------------------------------- 106

Query: 382 SDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGL---DLSSNELTGNIPSEI-GDLQNIH 437
             L  L        + +   +     +   +A L    L  N L   +P +   DL N+ 
Sbjct: 107 --LHTL-------HLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156

Query: 438 GLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSKFDVSYNNLS 495
            L L  N +S     +F  L  ++ L L  N++   + P    +L  L    +  NNLS
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 15/141 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLS-------LD 60
            L  L L    L       L      L+ LYL +N      L                L 
Sbjct: 106 RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN-----ALQALPDDTFRDLGNLTHLF 159

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS 120
           +  N  +  +P+     L  L  + + +N      P +   +  L  L +  NN +  L 
Sbjct: 160 LHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALP 217

Query: 121 QSLVTNCFSLIWLDLSNNNFD 141
              +    +L +L L++N + 
Sbjct: 218 TEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
                  L   +P  I        + L  N +S     SF   + +  L L  N L  +I
Sbjct: 16  TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARI 71

Query: 475 PPQ-LTELHSLSKFDVSYNNLSGPIPD 500
                T L  L + D+S N     +  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDP 98

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.6 bits (214), Expect = 5e-18
 Identities = 59/308 (19%), Positives = 105/308 (34%), Gaps = 35/308 (11%)

Query: 57  LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI--AKMQGLRFLDVSTNN 114
           LS +   N+ +     +      K     +   +      S +    +     L ++  N
Sbjct: 13  LSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLN 70

Query: 115 FAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR 174
            +  L  +L      +  L+++ N       P       L+ L   +N  S  + +    
Sbjct: 71  LS-SLPDNLPPQ---ITVLEITQNAL--ISLPE--LPASLEYLDACDNRLS-TLPELP-- 119

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
              L  LD+ NN+L+  +P        L+ ++   N L   +P        LE+L++  N
Sbjct: 120 -ASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPEL---PTSLEVLSVRNN 170

Query: 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALET----LDLRDNNFSGRIPHQ 290
            L+   +  L   S+E L +  N L  S+P    R    E        R+N  +  IP  
Sbjct: 171 QLTF--LPEL-PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 291 INEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
           I        ++L  N L   I   L +       D    R+Y S+     N+L   + + 
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSMSDGQQNTLHRPLADA 283

Query: 351 SLYQLDEE 358
                 E 
Sbjct: 284 VTAWFPEN 291

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 60/312 (19%), Positives = 109/312 (34%), Gaps = 48/312 (15%)

Query: 12  LDLSHNKLAGNFPTWL--LENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGE 69
            +  +N ++G +  +    +   K  +     N           +    L +++ + +  
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-S 73

Query: 70  LPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFS 129
           LP N+     ++  + I++N+   ++P   A    L +LD   N  +  L +       S
Sbjct: 74  LPDNLP---PQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPA----S 121

Query: 130 LIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS 189
           L  LD+ NN     + P       L+ +  DNN  +  + +     T L VL + NN+L+
Sbjct: 122 LKHLDVDNNQL--TMLPE--LPALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQLT 173

Query: 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSV 249
             +P    +   L+ L +S NLLE ++P         E   I                  
Sbjct: 174 -FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEI------------------ 210

Query: 250 EHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQG 309
                + N +   IP          T+ L DN  S RI   +++ +          Y   
Sbjct: 211 -FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 310 PIPHQLCRLRKL 321
               Q    R L
Sbjct: 269 SDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 9e-16
 Identities = 53/324 (16%), Positives = 102/324 (31%), Gaps = 54/324 (16%)

Query: 203 QILSMSKNLLEGNIPVQFNDLL----DLEILNISENNL--SGSMISTLNLSSVEHLYLQN 256
              S+S+N     I   + D        E   +   N   + S++    ++    L L  
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 257 NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC 316
             L  S+P+       +  L++  N     +P      ++L  L    N L   +P    
Sbjct: 69  LNLS-SLPDNL--PPQITVLEITQNALI-SLPELP---ASLEYLDACDNRLST-LPELPA 120

Query: 317 RLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQ 376
            L+ L   D+ +N+L   +P       +    N  L  L E               S   
Sbjct: 121 SLKHL---DVDNNQL-TMLPELPALLEYINADNNQLTMLPELP------------TSLEV 164

Query: 377 LRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQN- 435
           L +  + L +L +                    E +  LD+S+N L  ++P+      + 
Sbjct: 165 LSVRNNQLTFLPEL------------------PESLEALDVSTNLLE-SLPAVPVRNHHS 205

Query: 436 ---IHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 492
                      N ++  IPE+  +L    ++ L  N L+ +I   L++  +   +     
Sbjct: 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 493 NLSGPIPDKEQFSTFDESSYRGNL 516
             S     +         +     
Sbjct: 265 YFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 9e-16
 Identities = 39/261 (14%), Positives = 70/261 (26%), Gaps = 29/261 (11%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
               L L+   L+ + P  L      + VL +  N+     L      L  LD   N  +
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPPQ---ITVLEITQNALI--SLPELPASLEYLDACDNRLS 113

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             LP+        L ++++  N     +P   A    L +++   N         L    
Sbjct: 114 -TLPELPA----SLKHLDVDNNQLT-MLPELPAL---LEYINADNNQL-----TMLPELP 159

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG---KIKDGLLRSTELMVLDIS 184
            SL  L + NN       P       L+ L +  N                   +     
Sbjct: 160 TSLEVLSVRNNQL--TFLPE--LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
            NR++ HIP  + +      + +  N L  +   +       +                 
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 245 NLSSVEHLYLQNNALGGSIPN 265
           N                +  +
Sbjct: 274 NTLHRPLADAVTAWFPENKQS 294

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.3 bits (203), Expect = 2e-17
 Identities = 51/264 (19%), Positives = 81/264 (30%), Gaps = 24/264 (9%)

Query: 89  NSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL--VTNCFSLIWLDLSNNNFDGQIFP 146
              +    + I K   L+ L V        +      V     L  L L N    G   P
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 147 NYMNLTQLQLLYLDNNHFSGKIKDGLL------RSTELMVLDISNNRLSGHIPSWMGNFS 200
             +  T   L  L+  + S   +D  L          L VL I+           +  F 
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 201 YLQILSMSKNLLEGNIPV----QFNDLLDLEILNISENNLS----GSMISTLNLSSVEHL 252
            L  L +S N   G   +           L++L +    +                ++ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 253 YLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQG-P 310
            L +N+L  +         S L +L+L       ++P  +   + L  L L  N L   P
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNP 290

Query: 311 IPHQLCRLRKLGIMDLSHNRLYGS 334
            P +L ++  L    L  N    S
Sbjct: 291 SPDELPQVGNL---SLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 51/277 (18%), Positives = 77/277 (27%), Gaps = 22/277 (7%)

Query: 27  LLENNTKLEVLYLINN---SFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQ--KL 81
           L      LE L    +       F        L  L +        +      VL    L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 82  VYMNISKNSFEGNIPSSIAKMQG-----LRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS 136
             + +      G  P  + +  G     L   +VS       L++        L  L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK----DGLLRSTELMVLDISNNR---LS 189
             +              L  L L +N   G+         L+   L VL + N      S
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD-LEILNISENNLSGSMISTLNLSS 248
           G   +       LQ L +S N L         D    L  LN+S   L    +     + 
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGLPAK 275

Query: 249 VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
           +  L L  N L  +          +  L L+ N F  
Sbjct: 276 LSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 41/195 (21%), Positives = 61/195 (31%), Gaps = 18/195 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLE----NNTKLEVLYLINNSFSGF--QLTGAQHGLLSLDI 61
           +L  L+L +   A     WL E        L+VL +       F  +       L +LD+
Sbjct: 122 DLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 62  SKNSFTGELPQNMGIV------LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
           S N   GE      +       LQ L   N    +  G   +  A    L+ LD+S N+ 
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
                         L  L+LS      Q+        +L +L L  N          L  
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQ 297

Query: 176 TELMVLDISNNRLSG 190
             +  L +  N    
Sbjct: 298 --VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.1 bits (174), Expect = 1e-13
 Identities = 41/205 (20%), Positives = 66/205 (32%), Gaps = 17/205 (8%)

Query: 150 NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM---GNFSYLQILS 206
             +   LL   +          +++S  L  L +   R+   I          S LQ L+
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 207 MSKNLLEGNIPVQ--FNDLLDLEILNISENNLSG-----SMISTLNLSSVEHLYLQNNAL 259
           +    + G  P         DL ILN+   + +      + +       ++ L +     
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 260 GGSIPNTFFRGSALETLDLRDNNFSGRIPHQI----NEHSNLRALLLRANYLQ---GPIP 312
                       AL TLDL DN   G           +   L+ L LR   ++   G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 313 HQLCRLRKLGIMDLSHNRLYGSIPA 337
                  +L  +DLSHN L  +  A
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 53/286 (18%), Positives = 89/286 (31%), Gaps = 30/286 (10%)

Query: 197 GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI----STLNLSSVEHL 252
           G  S   +L       +          L L+ L +    +   ++      L +S ++ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 253 YLQNNALGGSIPNTFFR--GSALETLDLRDNNFSGRIPH----QINEHSNLRALLLRANY 306
            L+N  + G+ P       G  L  L+LR+ +++ R       Q      L+ L +   +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVD 366
                  Q+     L  +DLS N   G                + L   +        V 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 367 IRDYYNSTVQLRLDES--DLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG 424
                       LD S   LR        ++ ++                L+LS   L  
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS-------------LNLSFTGLKQ 267

Query: 425 NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL 470
            +P  +     +  L+LSYN L    P S   L  + +L L  N  
Sbjct: 268 -VPKGL--PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 50/260 (19%), Positives = 84/260 (32%), Gaps = 13/260 (5%)

Query: 241 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE---HSNL 297
           +     S    L   +            +  +L+ L +R      RI          S L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 298 RALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDE 357
           + L L    + G  P  L       +  L+   +  +        L   +    L  L  
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL-KPGLKVLSI 156

Query: 358 EGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDL 417
             A   N              LD SD   L ++  ++ +   ++ +     L+ +A  + 
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT-----LQVLALRNA 211

Query: 418 SSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPP 476
                +G   +       + GL+LS+N L  +    S      + SL+LS   L  Q+P 
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270

Query: 477 QLTELHSLSKFDVSYNNLSG 496
            L     LS  D+SYN L  
Sbjct: 271 GL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 415 LDLSSNELTGNIPSEIG-----DLQNIHGLNLSYNFLSGSIPESFSNLKM-IESLDLSHN 468
           L L + E+TG  P  +      DL  ++  N+S+      + E    LK  ++ L ++  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQF 504
                   Q+    +LS  D+S N   G        
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 55/289 (19%), Positives = 108/289 (37%), Gaps = 41/289 (14%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            +K LDLS+N++        L+    L+ L L +N      +           I ++SF+
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN-----GIN---------TIEEDSFS 97

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLVTN 126
                     L  L ++++S N    N+ SS    +  L FL++  N +      SL ++
Sbjct: 98  S---------LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 127 CFSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDIS 184
              L  L + N +   +I    +  LT L+ L +D +      +   L+S   +  L + 
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILH 206

Query: 185 NNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQ--------FNDLLDLEILNISENN 235
             +    +        S ++ L +    L+     +                 + I++ +
Sbjct: 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265

Query: 236 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNF 283
           L   M     +S +  L    N L  S+P+  F   ++L+ + L  N +
Sbjct: 266 LFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 28/267 (10%)

Query: 94  NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNN---NFDGQIFPNYMN 150
           +IPS +   + ++ LD+S N     +S S +  C +L  L L++N     +   F +   
Sbjct: 45  SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSS--- 98

Query: 151 LTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIP--SWMGNFSYLQILSM 207
           L  L+ L L  N+ S  +     +  + L  L++  N     +   S   + + LQIL +
Sbjct: 99  LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV 156

Query: 208 SKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPN 265
                   I  + F  L  LE L I  ++L      +L ++ +V HL L        +  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE 215

Query: 266 TFFRG-SALETLDLRDNNFSGRIPHQINEHS--------NLRALLLRANYLQGPIPHQLC 316
            F    S++E L+LRD +       +++             R + +    L   +   L 
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 317 RLRKLGIMDLSHNRLYGSIPACITNSL 343
           ++  L  ++ S N+L  S+P  I + L
Sbjct: 275 QISGLLELEFSRNQLK-SVPDGIFDRL 300

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 52/265 (19%), Positives = 102/265 (38%), Gaps = 20/265 (7%)

Query: 55  GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTN 113
            + SLD+S N  T  +  +       L  + ++ N     I     + +  L  LD+S N
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 114 NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDG 171
             +  LS S      SL +L+L  N +   +    +  +LT+LQ+L + N     KI+  
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 172 LLRS-TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILN 230
                T L  L+I  + L  + P  + +   +  L +        + +  +    +E L 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 231 ISENNLSGSMISTL---------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN 281
           + + +L     S L            +  ++ + + +L   +     + S L  L+   N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 282 NFSGRIPHQINEH-SNLRALLLRAN 305
                +P  I +  ++L+ + L  N
Sbjct: 288 QLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 59/303 (19%), Positives = 108/303 (35%), Gaps = 45/303 (14%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISE 233
           +  +  LD+SNNR++    S +     LQ L ++ N +   I    F+ L  LE L++S 
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 234 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI 291
           N LS    S    LSS+  L L  N        + F   + L+ L + + +   +I  + 
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 292 NEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
               + L  L + A+ LQ   P  L  ++ +  + L   +    +     +         
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT------S 222

Query: 351 SLYQLDEEGADVGNVDIRDYYNSTVQL-RLDESDLRWLVKQVEVNFMTKNRYESYKGVIL 409
           S+  L+          +RD    T     L   +   L+K                    
Sbjct: 223 SVECLE----------LRDTDLDTFHFSELSTGETNSLIK-------------------K 253

Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES-FSNLKMIESLDLSHN 468
                + ++   L   +   +  +  +  L  S N L  S+P+  F  L  ++ + L  N
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

Query: 469 KLN 471
             +
Sbjct: 312 PWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 53/331 (16%), Positives = 109/331 (32%), Gaps = 68/331 (20%)

Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS 239
           +   S+  L+  IPS  G    ++ L +S N +           ++L+ L ++ N ++  
Sbjct: 35  ICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-- 89

Query: 240 MIST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI--NE 293
            I      +L S+EHL L  N L  ++ +++F+  S+L  L+L  N +   +      + 
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSH 147

Query: 294 HSNLRALLLRANYLQGPIPHQ-LCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352
            + L+ L +        I  +    L  L  +++  + L                  +S+
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-----QSYEPKSL-----KSI 197

Query: 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM 412
             +                     L L       L++                      +
Sbjct: 198 QNVSH-------------------LILHMKQHILLLEIFVDV--------------TSSV 224

Query: 413 AGLDLSSNELTGNIPSEI--------GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLD 464
             L+L   +L     SE+                + ++   L   + +  + +  +  L+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 465 LSHNKLNGQIPPQ-LTELHSLSKFDVSYNNL 494
            S N+L   +P      L SL K  +  N  
Sbjct: 284 FSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 24/220 (10%), Positives = 57/220 (25%), Gaps = 39/220 (17%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDI 61
              H   L+ L + +               T LE L +  +                   
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--------------SY 189

Query: 62  SKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ 121
              S            +Q + ++ +        +   +     +  L++   +       
Sbjct: 190 EPKSLKS---------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 122 SLVTNCF-------SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR 174
            L T          +   + +++ +   Q+      ++ L  L    N     + DG+  
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFD 298

Query: 175 S-TELMVLDISNN------RLSGHIPSWMGNFSYLQILSM 207
             T L  + +  N          ++  W+   S  +  S 
Sbjct: 299 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 338

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQ 473
           LDLS+N +T    S++    N+  L L+ N ++ +I E SFS+L  +E LDLS+N L   
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SN 114

Query: 474 IPPQL-TELHSLSKFDVSYNNLSGPIPDKEQFS 505
           +       L SL+  ++  N     + +   FS
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFS 146

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 48/258 (18%)

Query: 242 STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL 301
           ++L+          + +L  SIP+      A+++LDL +N  +      +    NL+AL+
Sbjct: 26  ASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALV 82

Query: 302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
           L +N +          L  L  +DLS+N L  ++ +    S F       L  L      
Sbjct: 83  LTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSS----SWFKP-----LSSLTF---- 128

Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNE 421
                          L L  +  + L +    + +TK             +  L + + +
Sbjct: 129 ---------------LNLLGNPYKTLGETSLFSHLTK-------------LQILRVGNMD 160

Query: 422 LTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL-T 479
               I  +    L  +  L +  + L    P+S  +++ +  L L   +    +      
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD 219

Query: 480 ELHSLSKFDVSYNNLSGP 497
              S+   ++   +L   
Sbjct: 220 VTSSVECLELRDTDLDTF 237

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 7e-17
 Identities = 57/363 (15%), Positives = 109/363 (30%), Gaps = 34/363 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL-------- 59
           +L+YLD+SHN+L       +      L  L L  N F    +      L  L        
Sbjct: 101 DLEYLDVSHNRLQNISCCPM----ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

Query: 60  DISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGEL 119
              +         ++  +L  LV  +I     E     +   +     L    N+     
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH----LVFHPNSLFSVQ 212

Query: 120 SQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS---- 175
               V     L   ++  N+ + Q    +++        L+      +            
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 176 ---TELMVLDISNNRLSGHIPSWMGNFS-----YLQILSMSKNLLEGNIPVQFNDLLDLE 227
                +  L+I N  ++  I      +S      L I  +   +   +    ++   ++ 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 228 ILNISENNL-SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGR 286
           I  +S ++     M+   + SS   L    N    S+         L+TL L+ N     
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-N 391

Query: 287 IPHQINEHSNLRALLLRANYLQ----GPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS 342
                    N+ +L      L                 + +++LS N L GS+  C+   
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451

Query: 343 LFW 345
           +  
Sbjct: 452 VKV 454

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.5 bits (201), Expect = 2e-16
 Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 22/347 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ---LTGAQHGLLSLDISKN 64
            L +L LS  K        +   +    +L L++    G +   L      +L L    N
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
           S            L  L   NI  N        +           ++      E +    
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 125 TNCFSLIW------LDLSNNNFDGQIFPNYMN-----LTQLQLLYLDNNHFSGKIKDGLL 173
              F   W      L++ N     +I           L  L + ++ N  F    +    
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 174 RSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233
              E+ +  +S +           + S    L+ ++N+   ++    + L  L+ L +  
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 234 NNL---SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPH 289
           N L       + T N+SS+E L +  N+L     +       ++  L+L  N  +G +  
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 290 QINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP 336
            +     ++ L L  N +   IP  +  L+ L  ++++ N+L  S+P
Sbjct: 447 CLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQL-KSVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 83/480 (17%), Positives = 162/480 (33%), Gaps = 68/480 (14%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            L+ L LSHN++  +    +   N  LE L + +N             L  LD+S N F 
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS-LRHLDLSFNDFD 134

Query: 68  GELPQNMGIV-LQKLVYMNISKNSFEGNIPSSIAKMQ-GLRFLDVSTNNFAGELSQSLVT 125
             LP       L KL ++ +S   F       +A +      LD+ + +  G  ++SL  
Sbjct: 135 -VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193

Query: 126 NCFSLIWLDLSNNN------FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELM 179
              +++ L    N+              ++ L+ ++L   +       + +     T L 
Sbjct: 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253

Query: 180 VLDISNNRLSGHIPSWMGNF--SYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
           V                  F    ++ L++    +   I  +     +  + ++   ++ 
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 238 GSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI 291
             +            + +    L  +             S+   L+   N F+  +    
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 292 NEHSNLRALLLRANYLQ--GPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN 349
           +    L+ L+L+ N L+    +      +  L  +D+S N    S+ +   +        
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN----SLNSHAYDRTC--AWA 427

Query: 350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL 409
           ES+  L+               N      L  S  R L  +V+V                
Sbjct: 428 ESILVLNL------------SSN-----MLTGSVFRCLPPKVKV---------------- 454

Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHN 468
                LDL +N +  +IP ++  LQ +  LN++ N L  S+P+  F  L  ++ + L  N
Sbjct: 455 -----LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 91/465 (19%), Positives = 164/465 (35%), Gaps = 63/465 (13%)

Query: 58  SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFA 116
           +L +S+NS + EL       L +L  + +S N    ++   +    Q L +LDVS N   
Sbjct: 56  ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 117 GELSQSLVTNCFSLIWLDLSNNNFD----GQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL 172
                 +     SL  LDLS N+FD     + F N   LT+L  L L    F  ++    
Sbjct: 114 NISCCPMA----SLRHLDLSFNDFDVLPVCKEFGN---LTKLTFLGLSAAKFR-QLDLLP 165

Query: 173 LRSTELMVLDISNNRLSGH----IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI 228
           +    L  + +                + N + L ++    +L    + +  N L  L++
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPN--------TFFRGSALETLDLRD 280
            NI  N+ +   + T          L N  L               FF    +E L++ +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 281 NNFSGRIPHQINEHSN-----LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSI 335
              + RI  +   +S      L    ++                ++ I  LS +     I
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-PFI 344

Query: 336 PACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNF 395
                 S        S   L+               N               +K+++   
Sbjct: 345 HMVCPPSP------SSFTFLNF------------TQNVFTDSVFQGCST---LKRLQTLI 383

Query: 396 MTKNRYESYKGV--ILEHMAGLDLSSNELT----GNIPSEIGDLQNIHGLNLSYNFLSGS 449
           + +N  +++  V  + ++M+ L+     L               ++I  LNLS N L+GS
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 450 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNL 494
           +         ++ LDL +N++   IP  +T L +L + +V+ N L
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 1e-14
 Identities = 58/303 (19%), Positives = 116/303 (38%), Gaps = 39/303 (12%)

Query: 8   NLKYLDLSHNKLAGNF------PTWLLENNTKLEVLYLINNSFSGFQLTGAQH-----GL 56
            L +L LS+ KL              L     L  + L +   +               +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 57  LSLDISKNSFTG----ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVST 112
             L+I   + T     E        L+ L+  ++    F  +  +  +    +    +S 
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 113 NNFAGELSQSLVTNCF----SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS--G 166
           ++     +  +   C     S  +L+ + N F   +F     L +LQ L L  N      
Sbjct: 339 SD-----TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 167 KIKDGLLRSTELMVLDISNNRLSGHIP----SWMGNFSYLQILSMSKNLLEGNIPVQFND 222
           K+       + L  LD+S N L+ H      +W  +   + +L++S N+L G++   F  
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES---ILVLNLSSNMLTGSV---FRC 447

Query: 223 LLD-LEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRD 280
           L   +++L++  N +        +L +++ L + +N L  S+P+  F   ++L+ + L D
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506

Query: 281 NNF 283
           N +
Sbjct: 507 NPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 49/351 (13%), Positives = 108/351 (30%), Gaps = 19/351 (5%)

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSY---LQILSM 207
            + + L L  N  S +++   +   +EL VL +S+NR+   +      F +   L+ L +
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDF--HVFLFNQDLEYLDV 107

Query: 208 SKNLLEGNIPVQFNDLLDLEILNISENNLS--GSMISTLNLSSVEHLYLQNNALGGSIPN 265
           S N L+ NI      +  L  L++S N+           NL+ +  L L        +  
Sbjct: 108 SHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDL 163

Query: 266 TFFRGSALETLDLR-DNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIM 324
                  L  + L   +        +  +  N   L L  +            +  LG +
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 325 DLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDL 384
            LS+ +L       +   L       +L  +  +  +         +       ++  ++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 385 RWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYN 444
                 + +         +Y    L+ +    + +     +  +       ++   LS +
Sbjct: 284 Y----NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 445 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
                      +      L+ + N     +    + L  L    +  N L 
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 53/335 (15%), Positives = 102/335 (30%), Gaps = 62/335 (18%)

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
                L +S N +S      +   S L++L +S N +       F    DLE L++S N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 236 LSGSMISTLNLSSVEHLYLQNNALGGSIPNT--FFRGSALETLDLRDNNFSGRIPHQINE 293
           L    IS   ++S+ HL L  N     +P    F   + L  L L    F  ++      
Sbjct: 112 LQN--ISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVA 167

Query: 294 HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLY 353
           H +L  +LL            +       +   +   L+        NSLF         
Sbjct: 168 HLHLSCILLDLVSYH------IKGGETESLQIPNTTVLHLVFH---PNSLFS-------- 210

Query: 354 QLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA 413
                      V +    N+   L+L    L     Q  + F+++             + 
Sbjct: 211 -----------VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP-------TLL 252

Query: 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
            + L   E T     ++                       F   + +E L++ +  +  +
Sbjct: 253 NVTLQHIETTWKCSVKLF---------------------QFFWPRPVEYLNIYNLTITER 291

Query: 474 IPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFD 508
           I  +       +   +   ++   +    + + + 
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.3 bits (204), Expect = 8e-17
 Identities = 60/385 (15%), Positives = 122/385 (31%), Gaps = 67/385 (17%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQH---------GLLS 58
           +++ LD+   +L+      LL    + +V+ L +   +       +           L  
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE---ARCKDISSALRVNPALAE 60

Query: 59  LDISKNSFTGELPQNMGIVLQ----KLVYMNISKNSF--EG--NIPSSIAKMQGLRFLDV 110
           L++  N         +   LQ    K+  +++        G   + S++  +  L+ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 111 STNNF----AGELSQSLVTNCFSLIWLDLSNNNFDGQ----IFPNYMNLTQLQLLYLDNN 162
           S N         L + L+     L  L L   +        +          + L + NN
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 163 HFSGK----IKDGLLRSTE-LMVLDISNNRLS----GHIPSWMGNFSYLQILSMSKNLLE 213
             +      +  GL  S   L  L + +  ++      +   + + + L+ L++  N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 214 GN-----IPVQFNDLLDLEILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGSI 263
                   P   +    L  L I E  ++      L        S++ L L  N LG   
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 264 PNTFFRG-----SALETLDLRDNNFSGR----IPHQINEHSNLRALLLRANYLQGP---- 310
                         LE+L ++  +F+          + ++  L  L +  N L+      
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 311 ----IPHQLCRLRKLGIMDLSHNRL 331
               +      LR L    L+   +
Sbjct: 361 LCQGLGQPGSVLRVL---WLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 65/337 (19%), Positives = 107/337 (31%), Gaps = 60/337 (17%)

Query: 3   LRHQFNLKYLDLSHNKL----AGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQH---- 54
           LR    L  L+L  N+L           L   + K++ L L N   +G    G       
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG---AGCGVLSST 108

Query: 55  -----GLLSLDISKNSFTGELPQNMGIVLQ----KLVYMNISKNSFEGNIPSSIAKM--- 102
                 L  L +S N       Q +   L     +L  + +   S        +A +   
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168

Query: 103 -QGLRFLDVSTNNF----AGELSQSLVTNCFSLIWLDLSNNNFDGQ----IFPNYMNLTQ 153
               + L VS N+        L Q L  +   L  L L +          +     +   
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228

Query: 154 LQLLYLDNNHFSGK----IKDGLLRS-TELMVLDISNNRLS----GHIPSWMGNFSYLQI 204
           L+ L L +N         +  GLL   + L  L I    ++    G +   +     L+ 
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 205 LSMSKNLLEGNIPVQFNDLLD-----LEILNISENNLS-------GSMISTLNLSSVEHL 252
           LS++ N L         + L      LE L +   + +        S+++      +  L
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA--QNRFLLEL 346

Query: 253 YLQNNALGGSIPNTFFRG-----SALETLDLRDNNFS 284
            + NN L  +      +G     S L  L L D + S
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 60/325 (18%), Positives = 104/325 (32%), Gaps = 63/325 (19%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWL---LENNTKLEVLYLINNSFS-------GFQLTG 51
            L  Q  L+ L L +  L+      L   L      + L + NN  +          L  
Sbjct: 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196

Query: 52  AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVS 111
           +   L +L +     T +  +++  ++                          LR L + 
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASK---------------------ASLRELALG 235

Query: 112 TNNF----AGELSQSLVTNCFSLIWLDLSNNNFDGQ----IFPNYMNLTQLQLLYLDNNH 163
           +N        EL   L+     L  L +       +    +         L+ L L  N 
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 164 FSGK----IKDGLLR-STELMVLDISNNRLSG----HIPSWMGNFSYLQILSMSKNLLEG 214
              +    + + LL    +L  L + +   +     H  S +    +L  L +S N LE 
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355

Query: 215 NIPVQFNDLLD-----LEILNISENNLS----GSMISTL-NLSSVEHLYLQNNALGGSIP 264
               +    L      L +L +++ ++S     S+ +TL    S+  L L NN LG +  
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415

Query: 265 NTFFRG-----SALETLDLRDNNFS 284
                        LE L L D  +S
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 59/346 (17%), Positives = 109/346 (31%), Gaps = 67/346 (19%)

Query: 31  NTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNS 90
           +  ++ L +     S             L          LP      + +L    +++  
Sbjct: 2   SLDIQSLDIQCEELS-------DARWAEL----------LPLLQQCQVVRLDDCGLTEAR 44

Query: 91  FEGNIPSSIAKMQGLRFLDVSTNNF----AGELSQSLVTNCFSLIWLDLSNNNFDGQ--- 143
            + +I S++     L  L++ +N         + Q L T    +  L L N    G    
Sbjct: 45  CK-DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103

Query: 144 -IFPNYMNLTQLQLLYLDNNHFSGK----IKDGLLR-STELMVLDISNNRLS----GHIP 193
            +      L  LQ L+L +N         + +GLL     L  L +    LS      + 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 194 SWMGNFSYLQILSMSKNLLEGNIPVQF------NDLLDLEILNISENNLSGSMISTL--- 244
           S +      + L++S N +     V+       +    LE L +    ++      L   
Sbjct: 164 SVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 245 --NLSSVEHLYLQNNALGGS-----IPNTFFRGSALETLDLRDNNFSGR----IPHQINE 293
             + +S+  L L +N LG        P      S L TL + +   + +    +   +  
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 294 HSNLRALLLRANYLQGP--------IPHQLCRLRKLGIMDLSHNRL 331
             +L+ L L  N L           +    C+L  L    +     
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESL---WVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 38/202 (18%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWL---LENNTKLEVLYLINNSFSGFQLTGAQH----- 54
           L     L+ L +    +       L   L     L+ L L  N        GA+      
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD---EGARLLCETL 308

Query: 55  -----GLLSLDISKNSFTGELPQNMGIVLQK---LVYMNISKNSFEGNIPSSIAKM---- 102
                 L SL +   SFT     +   VL +   L+ + IS N  E      + +     
Sbjct: 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368

Query: 103 -QGLRFLDVSTNNF----AGELSQSLVTNCFSLIWLDLSNNNFD-------GQIFPNYMN 150
              LR L ++  +        L+ +L+ N  SL  LDLSNN           +       
Sbjct: 369 GSVLRVLWLADCDVSDSSCSSLAATLLANH-SLRELDLSNNCLGDAGILQLVESVRQ--P 425

Query: 151 LTQLQLLYLDNNHFSGKIKDGL 172
              L+ L L + ++S +++D L
Sbjct: 426 GCLLEQLVLYDIYWSEEMEDRL 447

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 63/429 (14%), Positives = 120/429 (27%), Gaps = 115/429 (26%)

Query: 79  QKLVYMNISKNSF-EGNIPSSIAKMQGLRFLDVSTNNF----AGELSQSLVTNCFSLIWL 133
             +  ++I      +      +  +Q  + + +           ++S +L  N  +L  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAEL 61

Query: 134 DLSNNNFDGQ---------IFPNYMNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMV 180
           +L +N                P+     ++Q L L N   +G     +   L     L  
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPS----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 181 LDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM 240
           L +S+N L                 +  + L EG +  Q      LE L +   +LS + 
Sbjct: 118 LHLSDNLLGD---------------AGLQLLCEGLLDPQCR----LEKLQLEYCSLSAAS 158

Query: 241 ISTL-----NLSSVEHLYLQNNALGGSIPNTFFRG-----SALETLDLRDNNFSGRIPHQ 290
              L          + L + NN +  +      +G       LE L L     +      
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 291 INEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE 350
           +         ++ +             LR+L    L  N+L     A +   L     + 
Sbjct: 219 L-------CGIVASK----------ASLREL---ALGSNKLGDVGMAELCPGL--LHPSS 256

Query: 351 SLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILE 410
            L  L      +      D                 L + +                  E
Sbjct: 257 RLRTLWIWECGITAKGCGD-----------------LCRVLRAK---------------E 284

Query: 411 HMAGLDLSSNELTGNIPSEIGD-LQNIHG----LNLSYNFLSG----SIPESFSNLKMIE 461
            +  L L+ NEL       + + L         L +     +           +  + + 
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344

Query: 462 SLDLSHNKL 470
            L +S+N+L
Sbjct: 345 ELQISNNRL 353

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 63/324 (19%), Positives = 108/324 (33%), Gaps = 36/324 (11%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            L  LD  ++ +  +     +E  T L  L   +N+ +   L+   + L  L    N  T
Sbjct: 43  TLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITTLDLSQNTN-LTYLACDSNKLT 98

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             L       L KL Y+N   N         +++   L +L+ + N     L++  V++ 
Sbjct: 99  -NLDVT---PLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNT----LTEIDVSHN 147

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             L  LD   N        +    TQL  L    N  +            L  L+   N 
Sbjct: 148 TQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELDVSQN---KLLNRLNCDTNN 202

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
           ++  +   +     L  L  S N L   I      L  L   + S N L  + +    LS
Sbjct: 203 IT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL--TELDVSTLS 254

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
            +  L+     L   I  T    + L             +   +  ++ L  L  +A  +
Sbjct: 255 KLTTLHCIQTDL-LEIDLTHN--TQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI 309

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRL 331
              +   L +  KL  + L++  L
Sbjct: 310 T-ELD--LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 66/392 (16%), Positives = 130/392 (33%), Gaps = 38/392 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           NL YL    NKL  N     +   TKL  L    N  +   ++     L  L+ ++N+ T
Sbjct: 86  NLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLDVSQNPL-LTYLNCARNTLT 140

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
            E+  +      +L  ++   N     +   +     L  LD S N     +++  V+  
Sbjct: 141 -EIDVSH---NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK----ITELDVSQN 190

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             L  L+   NN             QL  L   +N  + +I    L  T+L   D S N 
Sbjct: 191 KLLNRLNCDTNNITKLDLN---QNIQLTFLDCSSNKLT-EIDVTPL--TQLTYFDCSVNP 244

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
           L+  +       S L  L   +  L          L+  +        +    ++  + +
Sbjct: 245 LT-ELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC--RKIKELDVT--HNT 297

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
            +  L  Q   +   +  +      L  L L +   +  +   ++ ++ L++L     ++
Sbjct: 298 QLYLLDCQAAGI-TELDLSQN--PKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDI 367
           Q      + ++  L     +  +        +TN+      +  L        ++   D 
Sbjct: 352 QD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG 409

Query: 368 RDYYNSTVQLRLDESDLRWLVKQVEVNFMTKN 399
             Y  +T    +   +L      V   F ++N
Sbjct: 410 GVYDQAT--NTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 60/324 (18%), Positives = 111/324 (34%), Gaps = 33/324 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           N      +  ++     T   E    L  L   N+S +         GL  L  + N+ T
Sbjct: 19  NFASEVAAAFEMQAT-DTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT 77

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             L  +       L Y+    N    N+   +  +  L +L+  TN     L++  V+  
Sbjct: 78  -TLDLSQ---NTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNK----LTKLDVSQN 126

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             L +L+ + N           + TQL  L    N    K+       T+L  LD S N+
Sbjct: 127 PLLTYLNCARNTLTEIDVS---HNTQLTELDCHLNKKITKLDVTPQ--TQLTTLDCSFNK 181

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
           ++  +   +     L  L+   N +   +    N  + L  L+ S N L  + I    L+
Sbjct: 182 IT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL--TEIDVTPLT 233

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
            + +     N L   +  +    S L TL     +       +I+   N + +  +A   
Sbjct: 234 QLTYFDCSVNPL-TELDVSTL--SKLTTLHCIQTDLL-----EIDLTHNTQLIYFQAEGC 285

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRL 331
           +      +    +L ++D     +
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGI 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 69/453 (15%), Positives = 144/453 (31%), Gaps = 63/453 (13%)

Query: 78  LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN 137
               V       +       S  ++  L  LD   ++       + +     L  L  ++
Sbjct: 20  FASEVAAAFEMQA---TDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTS 73

Query: 138 NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 197
           NN            T L  L  D+N  +      L   T+L  L+   N+L+    S   
Sbjct: 74  NNITTLDLSQ---NTNLTYLACDSNKLTNLDVTPL---TKLTYLNCDTNKLTKLDVS--- 124

Query: 198 NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNN 257
               L  L+ ++N L     +  +    L  L+   N    + +     + +  L    N
Sbjct: 125 QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFN 180

Query: 258 ALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCR 317
            +   +  +      L  L+   NN + ++   +N++  L  L   +N L   I   +  
Sbjct: 181 KIT-ELDVSQN--KLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VTP 231

Query: 318 LRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQL 377
           L +L   D S N L   +                L  L     D+  +D+    ++T  +
Sbjct: 232 LTQLTYFDCSVNPL-TELDVS---------TLSKLTTLHCIQTDLLEIDLT---HNTQLI 278

Query: 378 RLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIH 437
                  R  +K+++V   T+                LD  +  +T     ++     + 
Sbjct: 279 YFQAEGCR-KIKELDVTHNTQLYL-------------LDCQAAGIT---ELDLSQNPKLV 321

Query: 438 GLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGP 497
            L L+   L+  +    S+   ++SL   +  +       + ++ +L+    +       
Sbjct: 322 YLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITM 376

Query: 498 IPDKEQFSTFDESSYRGNLHLCGPPINKSCTNL 530
             +    ++   +     L   G P+N    + 
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG 409

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 45/286 (15%), Positives = 97/286 (33%), Gaps = 33/286 (11%)

Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALE 274
           +    F D      +  +    +   IS   L+++  L   N+++           + L 
Sbjct: 10  SFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKL--TGLT 67

Query: 275 TLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334
            L    NN +  +   +++++NL  L   +N L       L +L  L   +   N+L   
Sbjct: 68  KLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYL---NCDTNKL-TK 120

Query: 335 IPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTV-----QLRLDESDLRWLVK 389
           +             N  L  L+     +  +D+      T        ++ + D+    +
Sbjct: 121 LDVS---------QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ 171

Query: 390 QVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS 449
              ++  + N+         + +  L+  +N +T  +   +     +  L+ S N L+  
Sbjct: 172 LTTLDC-SFNKITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-E 226

Query: 450 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           I    + L  +   D S N L       L++L +L        +L 
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 5e-14
 Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 22/240 (9%)

Query: 78  LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN 137
             + +  N+ K S    +     ++  +  +  + ++     S   +    ++  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 74

Query: 138 NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSW 195
           N           NL  L  L+LD N    KIKD   L    +L  L + +N +S  I   
Sbjct: 75  NKL--TDIKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DING- 126

Query: 196 MGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYL 254
           + +   L+ L +  N +  +I V  + L  L+ L++ +N +S   I  L  L+ +++LYL
Sbjct: 127 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYL 182

Query: 255 QNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQ 314
             N +  S          L+ L+L       +  +  +       +      L  P    
Sbjct: 183 SKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 7e-14
 Identities = 51/258 (19%), Positives = 105/258 (40%), Gaps = 29/258 (11%)

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
            +  ++ K S T  + QN    L  +  +  + +  + ++   I  +  +  L ++ N  
Sbjct: 23  TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 77

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQI--FPNYMNLTQLQLLYLDNNHFSGKIKD--G 171
                   +TN  +L WL L  N    +I    +  +L +L+ L L++N     I D  G
Sbjct: 78  T---DIKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHN----GISDING 126

Query: 172 LLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNI 231
           L+   +L  L + NN+++  I   +   + L  LS+  N +  +I      L  L+ L +
Sbjct: 127 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYL 182

Query: 232 SENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQ 290
           S+N++S   +  L  L +++ L L +        N         T+   D +     P  
Sbjct: 183 SKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEI 238

Query: 291 INEHSNLRALLLRANYLQ 308
           I++  +     ++ +  +
Sbjct: 239 ISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 1e-11
 Identities = 39/241 (16%), Positives = 82/241 (34%), Gaps = 23/241 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           ++  +  +++ +        ++    +  L+L  N  +  +       L  L + +N   
Sbjct: 44  SIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK 100

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ-SLVTN 126
                     L+KL  +++  N    +I + +  +  L  L +  N     ++  ++++ 
Sbjct: 101 DLSSLKD---LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNK----ITDITVLSR 151

Query: 127 CFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDIS 184
              L  L L +N            LT+LQ LYL  N     I D   L     L VL++ 
Sbjct: 152 LTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELF 205

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
           +        +   N      +  +   L    P   +D  D E  N+  +    +   + 
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 245 N 245
            
Sbjct: 264 I 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 51/295 (17%), Positives = 102/295 (34%), Gaps = 31/295 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQH--GLLSLDISKNS 65
                +L    +              ++ +   N+      + G Q+   +  L ++ N 
Sbjct: 22  ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNK 76

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
            T   P      L+ L ++ + +N  + ++ SS+  ++ L+ L +  N  +     + + 
Sbjct: 77  LTDIKPLTN---LKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS---DINGLV 128

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDI 183
           +   L  L L NN            LT+L  L L++N    +I D   L   T+L  L +
Sbjct: 129 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLYL 182

Query: 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST 243
           S N +S  + + +     L +L +             ++L+    +     N  GS+++ 
Sbjct: 183 SKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV----KNTDGSLVTP 236

Query: 244 LNLSSVEHLYLQN--NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSN 296
             +S        N    L        F      T+      F GR+   + E   
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 16/198 (8%)

Query: 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 194
           ++ +    QIFP+     +     L     +  +    L S  +  +  +N+ +   +  
Sbjct: 5   ITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SVQG 60

Query: 195 WMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLY 253
            +     +  L ++ N L  +I     +L +L  L + EN +    +S+L +L  ++ L 
Sbjct: 61  -IQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLS 115

Query: 254 LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH 313
           L++N +   I         LE+L L +N  +      ++  + L  L L  N +   +P 
Sbjct: 116 LEHNGI-SDING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP- 170

Query: 314 QLCRLRKLGIMDLSHNRL 331
            L  L KL  + LS N +
Sbjct: 171 -LAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 19/181 (10%)

Query: 154 LQLLYLDNNHFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL 211
           +      +      IK         E +  ++    ++  +       + +  +  + + 
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD 54

Query: 212 LEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG 270
           ++ ++      L ++  L ++ N L+   I  L NL ++  L+L  N +   + +     
Sbjct: 55  IK-SVQ-GIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIK-DLSS-LKDL 108

Query: 271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330
             L++L L  N  S  I   +     L +L L  N +       L RL KL  + L  N+
Sbjct: 109 KKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ 164

Query: 331 L 331
           +
Sbjct: 165 I 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
                  +L    +T  +     +L +I  +  + + +  S+ +    L  +  L L+ N
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGN 75

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLS 495
           KL   I P LT L +L    +  N + 
Sbjct: 76  KLT-DIKP-LTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           L L  N ++ +I   +  L  +  L L  N ++       S L  +++L L  N+++  I
Sbjct: 114 LSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI 168

Query: 475 PPQLTELHSLSKFDVSYNNLS 495
            P L  L  L    +S N++S
Sbjct: 169 VP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 42/277 (15%)

Query: 222 DLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRD 280
              +    N+ + +++     T   L+S++ +   N+ +  S+         +  L L  
Sbjct: 19  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74

Query: 281 NNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACIT 340
           N  +  I   +    NL  L L  N ++      L  L+KL  + L HN         I+
Sbjct: 75  NKLT-DIKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNG--------IS 122

Query: 341 NSLFWKVGNESLYQLDE-EGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKN 399
           +          L  L + E   +GN  I D            + L  L K   ++ +  N
Sbjct: 123 D-------INGLVHLPQLESLYLGNNKITDI-----------TVLSRLTKLDTLS-LEDN 163

Query: 400 RYESYKGVI-LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLK 458
           +      +  L  +  L LS N ++ ++   +  L+N+  L L             SNL 
Sbjct: 164 QISDIVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 459 MIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           +  ++  +   L    P  +++     K +V ++   
Sbjct: 222 VPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 30/226 (13%)

Query: 94  NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPN--YMNL 151
           N+P S       + LD+S N     L      +   L  LDLS      Q   +  Y +L
Sbjct: 25  NLPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSL 75

Query: 152 TQLQLLYLDNNHFS---GKIKDGLLRSTELMVLDISNNRLSGHIPSWM-GNFSYLQILSM 207
           + L  L L  N           GL   + L  L      L+  + ++  G+   L+ L++
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 208 SKNLLEGNIPVQ--FNDLLDLEILNISENNLS----GSMISTLNLSSVE-HLYLQNNALG 260
           + NL++ +  +   F++L +LE L++S N +       +     +  +   L L  N + 
Sbjct: 132 AHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 261 GSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH-SNLRALLLRAN 305
             I    F+   L+ L L  N     +P  I +  ++L+ + L  N
Sbjct: 191 -FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 49/265 (18%), Positives = 83/265 (31%), Gaps = 74/265 (27%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           + K LDLS N L  +  ++   +  +L+VL L        ++           I   ++ 
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-----EIQ---------TIEDGAYQ 73

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
             L                                  L  L ++ N       QSL    
Sbjct: 74  S-LSH--------------------------------LSTLILTGNPI-----QSLALGA 95

Query: 128 F----SLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRS-TELMV 180
           F    SL  L     N       N+   +L  L+ L + +N            + T L  
Sbjct: 96  FSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 181 LDISNNRLSGHIPSWMGNFSYLQ-------ILSMSKNLLEGNIPVQFNDLLDLEILNISE 233
           LD+S+N++   I     +   L         L +S N +   I       + L+ L +  
Sbjct: 154 LDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDT 209

Query: 234 NNLSGSMISTL-NLSSVEHLYLQNN 257
           N L          L+S++ ++L  N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 15/172 (8%)

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISEN 234
                LD+S N L         +F  LQ+L +S+  ++  I    +  L  L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 235 NLSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQ 290
            +    ++      LSS++ L      L  S+ N        L+ L++  N        +
Sbjct: 87  PIQ--SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 291 INEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIM----DLSHNRLYGSIPA 337
              + +NL  L L +N +Q      L  L ++ ++    DLS N +   I  
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 46/238 (19%), Positives = 75/238 (31%), Gaps = 47/238 (19%)

Query: 247 SSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI-NEHSNLRALLLRA 304
            S ++L L  N L   + +  F     L+ LDL        I        S+L  L+L  
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 305 NYLQ---GPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
           N +Q         L  L+KL         L  S+       L       +L +L+     
Sbjct: 86  NPIQSLALGAFSGLSSLQKL---VAVETNL-ASLENFPIGHLK------TLKELNVAHNL 135

Query: 362 VGNVDIRDYYNSTVQLR-----------LDESDLRWLVKQVEVNFMTKNRYESYKGVILE 410
           + +  + +Y+++   L            +  +DLR L +                  +  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ------------------MPL 177

Query: 411 HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
               LDLS N +   I         +  L L  N L       F  L  ++ + L  N
Sbjct: 178 LNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 415 LDLSSNELTGNIPSEIGD-LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
           LDLS  E+   I       L ++  L L+ N +      +FS L  ++ L      L   
Sbjct: 57  LDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-S 114

Query: 474 IPPQL-TELHSLSKFDVSYNNLS 495
           +       L +L + +V++N + 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQ 137

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 30/185 (16%), Positives = 71/185 (38%), Gaps = 12/185 (6%)

Query: 78  LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN 137
            +  +   + ++S       + A+M  L ++ ++  N       + +    ++  L ++N
Sbjct: 22  FKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINN 75

Query: 138 NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 197
            +     +     L+ L+ L +     +      L   T L +LDIS++     I + + 
Sbjct: 76  IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 198 NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQN 256
               +  + +S N    +I      L +L+ LNI  + +       + +   +  LY  +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFS 190

Query: 257 NALGG 261
             +GG
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDISNN 186
           SL ++ L+N N              ++ L ++N        +   +   + L  L I   
Sbjct: 45  SLTYITLANINV--TDLTGIEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGK 98

Query: 187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL 246
            ++      +   + L +L +S +  + +I  + N L  +  +++S N     ++    L
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL 158

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG 285
             ++ L +Q + +        F    L  L        G
Sbjct: 159 PELKSLNIQFDGVHDYRGIEDF--PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +L Y+ L++  +        +E    ++ L + N   + +        L  L I     T
Sbjct: 45  SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
            +   N+   L  L  ++IS ++ + +I + I  +  +  +D+S N    ++    +   
Sbjct: 102 SDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTL 158

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG 166
             L  L++  +      +    +  +L  LY  +    G
Sbjct: 159 PELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           L +   ++T +    +  L ++  L++S++    SI    + L  + S+DLS+N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 475 PPQLTELHSLSKFDVSYNNLS 495
            P L  L  L   ++ ++ + 
Sbjct: 153 MP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           L +++   T    + I  L N+  L +    ++     + S L  +  LD+SH+  +  I
Sbjct: 71  LTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 475 PPQLTELHSLSKFDVSYNNL 494
             ++  L  ++  D+SYN  
Sbjct: 129 LTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 23/198 (11%), Positives = 64/198 (32%), Gaps = 34/198 (17%)

Query: 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 194
               + D    P+           L  +  +   +  +     L  + ++N  ++     
Sbjct: 7   GLKASQDNVNIPDS-TFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVT----- 57

Query: 195 WMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLY 253
              + + ++                     +++ L I+  + +    + +  LS++E L 
Sbjct: 58  ---DLTGIEYAH------------------NIKDLTINNIHATN--YNPISGLSNLERLR 94

Query: 254 LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH 313
           +    +           ++L  LD+  +     I  +IN    + ++ L  N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 314 QLCRLRKLGIMDLSHNRL 331
            L  L +L  +++  + +
Sbjct: 155 -LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           +  +  + L++  +T ++ + I    NI  L ++    +       S L  +E L +   
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK 501
            +     P L+ L SL+  D+S++     I  K
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 8/141 (5%)

Query: 198 NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQN 256
            F       + ++       +    +  L  + ++  N++   ++ +    +++ L + N
Sbjct: 21  TFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINN 75

Query: 257 NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC 316
                  P      S LE L +   + +      ++  ++L  L +  +     I  ++ 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 317 RLRKLGIMDLSHNRLYGSIPA 337
            L K+  +DLS+N     I  
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP 154

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 15/204 (7%)

Query: 129 SLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNN 186
           S   L L   +    I  + + NL  +  +Y+  +    +++     + +++  ++I N 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 187 RLSGHIPSWM-GNFSYLQILSMSKNLLEGNIP--VQFNDLLDLEILNISENN----LSGS 239
           R   +I          L+ L +    L+   P   +        IL I++N     +  +
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 240 MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI--NEHSNL 297
               L  +    L L NN    S+    F G+ L+ + L  N +   I        +S  
Sbjct: 150 AFQGLC-NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 298 RALLLRANYLQGPIPHQLCRLRKL 321
             L +    +       L  L++L
Sbjct: 208 SLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 22/210 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT----GAQHGLLSL---D 60
           + + L L    L    P+    N   +  +Y+  +      L      + + L  +   +
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV----TLQQLESHSFYNLSKVTHIE 86

Query: 61  ISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP--SSIAKMQGLRFLDVSTNNFAGE 118
           I        +  +    L  L ++ I     +   P  + +        L+++ N +   
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 119 LSQSLVTN-CFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR--S 175
           +  +     C   + L L NN F   +     N T+L  +YL+ N +   I         
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQIL 205
           +   +LD+S   ++  +PS      +L+ L
Sbjct: 205 SGPSLLDVSQTSVT-ALPS--KGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 19/216 (8%)

Query: 127 CFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISN 185
           C       ++  +   Q  P+       Q L L   H    I      +   +  + +S 
Sbjct: 10  CHQEEDFRVTCKDI--QRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSI 64

Query: 186 NRLSGHIPSWMGNFSY---LQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLS--GS 239
           +     + S   +F     +  + +        I      +L  L+ L I    L     
Sbjct: 65  DVTLQQLES--HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122

Query: 240 MISTLNLSSVEHLYLQNNALGGSIPNTFFRG--SALETLDLRDNNFSGRIPHQINEHSNL 297
           +    +      L + +N    SIP   F+G  +   TL L +N F+  +       + L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181

Query: 298 RALLLRANYLQGPIPHQLCR--LRKLGIMDLSHNRL 331
            A+ L  N     I             ++D+S   +
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 24/161 (14%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLS---LDISKN 64
            + ++++ + +         L+    L+ L + N     F      +       L+I+ N
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 65  SFTGELPQNMGIVLQK-LVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL 123
            +   +P N    L    + + +  N F  ++         L  + ++ N +   + +  
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 124 VTNCFSLI-WLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH 163
               +S    LD+S  +      P+   L  L+ L   N  
Sbjct: 200 FGGVYSGPSLLDVSQTSV--TALPSKG-LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 36/270 (13%), Positives = 80/270 (29%), Gaps = 55/270 (20%)

Query: 225 DLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNF 283
             E   ++  ++    I +L   S + L L    L  +IP+  F     +  + +  +  
Sbjct: 12  QEEDFRVTCKDIQR--IPSL-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVT 67

Query: 284 SGRIPHQI-NEHSNLRALLLRANYLQGPIPHQLCR-LRKLGIMDLSHNRLYGSIPACITN 341
             ++        S +  + +R       I     + L  L  + + +  L    P     
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD---- 122

Query: 342 SLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRY 401
            L      +  + L+               N  +   +  +  + L  +           
Sbjct: 123 -LTKVYSTDIFFILE------------ITDNPYMT-SIPVNAFQGLCNETLT-------- 160

Query: 402 ESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLK-M 459
                        L L +N  T ++     +   +  + L+ N     I + +F  +   
Sbjct: 161 -------------LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 460 IESLDLSHNKLNGQIPP----QLTELHSLS 485
              LD+S   +   +P      L EL + +
Sbjct: 207 PSLLDVSQTSVT-ALPSKGLEHLKELIARN 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 17/213 (7%)

Query: 129 SLIWLDLSNNNF---DGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDIS 184
           + I L              F        L+ + +  N     I+  +  +  +L  + I 
Sbjct: 31  NAIELRFVLTKLRVIQKGAF---SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 185 N-NRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN----LSG 238
             N L  +I      N   LQ L +S   ++    V     L   +L+I +N     +  
Sbjct: 88  KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 239 SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH-SNL 297
           +    L+  S   L+L  N +   I N+ F G+ L+ L+L DNN    +P+ +    S  
Sbjct: 147 NSFVGLSFES-VILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204

Query: 298 RALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330
             L +    +     + L  L+KL      + +
Sbjct: 205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 43/238 (18%), Positives = 85/238 (35%), Gaps = 28/238 (11%)

Query: 58  SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG 117
                ++  T E+P ++     +L                + +    L  +++S N+   
Sbjct: 13  VFLCQESKVT-EIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 118 ELSQSLVTNCFSLIWLDLSNNN----FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL- 172
            +   + +N   L  + +   N     + + F    NL  LQ L + N      + D   
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAF---QNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 173 LRSTELMVLDISNNRLSGHIP--SWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILN 230
           + S + ++LDI +N     I   S++G      IL ++KN ++  I     +   L+ LN
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 231 ISENNLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDN 281
           +S+NN     +  L        S    L +    +  S+P+        L      + 
Sbjct: 184 LSDNNN----LEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 17/233 (7%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSL---DISKN 64
           N   L     KL              LE + +  N             L  L    I K 
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSL 123
           +    +       L  L Y+ IS    + ++P            LD+  N     + ++ 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 124 VTNC-FSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRS-TELM 179
                F  + L L+ N    Q   N         +L   DNN+   ++ + +    +  +
Sbjct: 149 FVGLSFESVILWLNKNGI--QEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPV 205

Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNIS 232
           +LDIS  R+   +PS       L+ L          +P     L+ L   +++
Sbjct: 206 ILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 34/252 (13%)

Query: 225 DLEILNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRD 280
           +   L      L   +I          +E + +  N +   I    F     L  + +  
Sbjct: 31  NAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 281 NNFSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACI 339
            N    I  +  ++  NL+ LL+    ++           +  ++D+  N    +I    
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--- 145

Query: 340 TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKN 399
             + F  +  ES+              +    N    ++   +      +  E+N    N
Sbjct: 146 -RNSFVGLSFESVI-------------LWLNKN---GIQEIHNSAFNGTQLDELNLSDNN 188

Query: 400 RYESYKGVI---LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSN 456
             E     +         LD+S   +  ++PS    L+N+  L     +    +P +   
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLP-TLEK 244

Query: 457 LKMIESLDLSHN 468
           L  +    L++ 
Sbjct: 245 LVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 42/263 (15%), Positives = 78/263 (29%), Gaps = 56/263 (21%)

Query: 247 SSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI-NEHSNLRAL-LLR 303
            +   L      L   I    F G   LE +++  N+    I   + +    L  + + +
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
           AN L    P     L  L  + +S+  +   +P         K+ +     LD       
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPD------VHKIHSLQKVLLD------- 134

Query: 364 NVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT 423
                   N  +   ++ +    L  +  +                     L L+ N + 
Sbjct: 135 -----IQDNINIH-TIERNSFVGLSFESVI---------------------LWLNKNGIQ 167

Query: 424 GNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ----L 478
             I +      Q         N L     + F        LD+S  +++  +P      L
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL 225

Query: 479 TELHSLSKFDVSYNNLSGPIPDK 501
            +L + S    +YN    P  +K
Sbjct: 226 KKLRARS----TYNLKKLPTLEK 244

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 12/185 (6%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHG--LLSLDISKNS 65
            L  + +              +N   L+ L + N            H    + LDI  N 
Sbjct: 80  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 66  FTGELPQNMGIVLQ-KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
               + +N  + L  + V + ++KN  +  I +S      L  L++S NN   EL   + 
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD 182
                 + LD+S         P+Y   NL +L+     N      + + L     LM   
Sbjct: 199 HGASGPVILDISRTRI--HSLPSYGLENLKKLRARSTYNLKKLPTL-EKL---VALMEAS 252

Query: 183 ISNNR 187
           ++   
Sbjct: 253 LTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
                +++T  IPS++   +N   L      L      +FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 475 PPQ-LTELHSLSKFDVSYNN 493
                + L  L +  +   N
Sbjct: 71  EADVFSNLPKLHEIRIEKAN 90

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 19/186 (10%)

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL 211
               +L+L  N         L+  T L  L++    L+  +    G    L  L +S N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88

Query: 212 LEGNIPVQFNDLLDLEILNISENNLSGSMISTL------NLSSVEHLYLQNNALGGSIPN 265
           L+ ++P+    L  L +L++S N      +++L       L  ++ LYL+ N L  ++P 
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNR-----LTSLPLGALRGLGELQELYLKGNEL-KTLPP 141

Query: 266 TFFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLGI 323
                   LE L L +NN +  +P  +     NL  LLL+ N L   IP        L  
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPF 199

Query: 324 MDLSHN 329
             L  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 41/171 (23%), Positives = 66/171 (38%), Gaps = 10/171 (5%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
               + ++     L+  +P          IL +S+NLL             L  LN+   
Sbjct: 9   VASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH 294
            L+  +     L  +  L L +N L  S+P       AL  LD+  N  +  +P      
Sbjct: 66  ELT-KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122

Query: 295 -SNLRALLLRANYLQGPIPHQLC-RLRKLGIMDLSHNRLYGSIPACITNSL 343
              L+ L L+ N L+  +P  L     KL  + L++N L   +PA + N L
Sbjct: 123 LGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGL 171

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 47/186 (25%), Positives = 67/186 (36%), Gaps = 19/186 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +   L LS N L   F    L   T+L  L L     +  Q+ G    L +LD+S N   
Sbjct: 32  DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLVTN 126
             LP  +G  L  L  +++S N    ++P      +  L+ L +  N       ++L   
Sbjct: 91  -SLP-LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-----KTLPPG 142

Query: 127 CF----SLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
                  L  L L+NNN      P  +   L  L  L L  N     I  G   S  L  
Sbjct: 143 LLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPF 199

Query: 181 LDISNN 186
             +  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
              +  L+L   ELT  +  + G L  +  L+LS+N L  S+P     L  +  LD+S N
Sbjct: 54  YTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 469 KLNGQIPP----QLTELHSLSKFDVSYNNLS 495
           +L   +P      L EL  L    +  N L 
Sbjct: 111 RLT-SLPLGALRGLGELQELY---LKGNELK 137

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 415 LDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
           ++     LT  +P ++  D      L+LS N L      +      +  L+L   +L   
Sbjct: 15  VNCDKRNLT-ALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--T 68

Query: 474 IPPQLTELHSLSKFDVSYNNLS 495
                  L  L   D+S+N L 
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQ 90

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 415 LDLSSNELTGNIPSEIGD-LQNIHGLNLSYNFLSGSIPES-FSNLKMIESLDLSHNKLNG 472
           LD+S N LT ++P      L  +  L L  N L  ++P    +    +E L L++N L  
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT- 161

Query: 473 QIPPQL-TELHSLSKFDVSYNNLSGPIPDKEQFSTFDESS 511
           ++P  L   L +L    +  N+L   IP       F    
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYT-IPK----GFFGSHL 196

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 19/231 (8%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           NL  L+L  N++    P   L+N TK+  L L  N             + +LD++    T
Sbjct: 64  NLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
              P      L  L  + +  N    NI S +A +  L++L +     +     + + N 
Sbjct: 121 DVTPLAG---LSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS---DLTPLANL 172

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             L  L   +N           +L  L  ++L NN  S      L  ++ L ++ ++N  
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQT 228

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNI-PVQFNDLLDLEILNISENNLS 237
           ++     +  N   L + ++ K      I P   +D       N++ N  S
Sbjct: 229 ITNQPVFYNNN---LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 44/242 (18%), Positives = 88/242 (36%), Gaps = 25/242 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            +  L      +        ++    L  L L +N  +          +  L++S N   
Sbjct: 42  GITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                     LQ +  ++++        P  +A +  L+ L +  N      + S +   
Sbjct: 99  NVSAIAG---LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT---NISPLAGL 150

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDISN 185
            +L +L + N            NL++L  L  D+N    KI D   L     L+ + + N
Sbjct: 151 TNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDN----KISDISPLASLPNLIEVHLKN 204

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN 245
           N++S   P  + N S L I++++   +        N+L+   ++       SG+ I+   
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV----KGPSGAPIAPAT 258

Query: 246 LS 247
           +S
Sbjct: 259 IS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 41/252 (16%), Positives = 89/252 (35%), Gaps = 23/252 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           N   +    + +          +   +  L       +  +     + L+ L++  N  T
Sbjct: 20  NAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT 76

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
              P      L K+  + +S N       S+IA +Q ++ LD+++         + +   
Sbjct: 77  DLAPLKN---LTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI---TDVTPLAGL 128

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDISN 185
            +L  L L  N            LT LQ L + N     ++ D   L   ++L  L   +
Sbjct: 129 SNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNA----QVSDLTPLANLSKLTTLKADD 182

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN 245
           N++S  I   + +   L  + +  N +    P    +  +L I+ ++   ++   +   N
Sbjct: 183 NKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 246 LSSVEHLYLQNN 257
              V ++    +
Sbjct: 239 NLVVPNVVKGPS 250

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 46/238 (19%), Positives = 90/238 (37%), Gaps = 24/238 (10%)

Query: 97  SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL 156
                +     +    +N    ++Q+ +     +  L                 L  L  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDG---ITTLSAFGTGV--TTIEGVQYLNNLIG 67

Query: 157 LYLDNNHFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
           L L +N    +I D   L   T++  L++S N L  ++ + +     ++ L ++   +  
Sbjct: 68  LELKDN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD 121

Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL 273
             P     L +L++L +  N +  + IS L  L+++++L + N  +    P      S L
Sbjct: 122 VTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLANL--SKL 175

Query: 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
            TL   DN  S   P  +    NL  + L+ N +    P  L     L I+ L++  +
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           L ++ GL+L  N++T    + + +L  I  L LS N L      + + L+ I++LDL+  
Sbjct: 62  LNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTST 117

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLS 495
           ++    P  L  L +L    +  N ++
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
           L ++  L L  N++T NI S +  L N+  L++    +S  +    +NL  + +L    N
Sbjct: 128 LSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDN 183

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLS 495
           K++  I P L  L +L +  +  N +S
Sbjct: 184 KIS-DISP-LASLPNLIEVHLKNNQIS 208

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 49/304 (16%), Positives = 98/304 (32%), Gaps = 57/304 (18%)

Query: 1   KFLRHQFNLKYLDLSHNKLAGNFPTWL---LENNTKLEVLYLINNSFSGFQLTGAQHGLL 57
             L    ++K + LS N +      WL   + +   LE+    +  F+G         L 
Sbjct: 26  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALR 84

Query: 58  SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGN----IPSSIAKMQGLRFLDVSTN 113
            L                +   KL  + +S N+F       +   ++K   L  L +  N
Sbjct: 85  LL------------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 114 NF----AGELSQSLVTNCF--------SLIWLDLSNNNFDGQ----IFPNYMNLTQLQLL 157
                   +++++L              L  +    N  +          + +   L  +
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 158 YLDNNHFSGK-----IKDGLLRSTELMVLDISNNRLSG----HIPSWMGNFSYLQILSMS 208
            +  N    +     + +GL    EL VLD+ +N  +      +   + ++  L+ L ++
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252

Query: 209 KNLL--EGNIPV----QFNDLLDLEILNISENNLSGSMISTL------NLSSVEHLYLQN 256
             LL   G   V       + + L+ L +  N +    + TL       +  +  L L  
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312

Query: 257 NALG 260
           N   
Sbjct: 313 NRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 58/236 (24%)

Query: 1   KFLRHQFNLKYLDLSHNK------------LAGNFPTWLLENNTKLEVLYLINNSFSGFQ 48
            FL     L++L L +N             L         +N   L  +    N      
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-- 173

Query: 49  LTGAQH---------GLLSLDISKNSFTGE---------LPQNMGIVLQKLVYMNISKNS 90
               +           L ++ + +N    E         L        Q+L  +++  N+
Sbjct: 174 -GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-----QELKVLDLQDNT 227

Query: 91  F--EG--NIPSSIAKMQGLRFLDVSTNNF----AGELSQSLVTNCF-SLIWLDLSNNNFD 141
           F   G   +  ++     LR L ++        A  +  +        L  L L  N  +
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 142 ---GQIFPNYM--NLTQLQLLYLDNNHFS------GKIKDGLLRSTELMVLDISNN 186
               +     +   +  L  L L+ N FS       +I++         + ++ + 
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 44/246 (17%)

Query: 95  IPSSIAKMQGLRFLDVSTNNF----AGELSQSLVTNCFSLIWLDLSNN--NFDGQIFPNY 148
           + + + +   ++ + +S N      A  LS+++ +    L   + S+          P  
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEA 82

Query: 149 M--------NLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSGHIPSWM 196
           +           +L  + L +N F       + D L + T L  L + NN L        
Sbjct: 83  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ----- 137

Query: 197 GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL---SGSMISTL--NLSSVEH 251
                     +++ L E  +  +  +   L  +    N L   S    +    +   +  
Sbjct: 138 A------GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 252 LYLQNNALG-----GSIPNTFFRGSALETLDLRDNNFSGR----IPHQINEHSNLRALLL 302
           + +  N +        +         L+ LDL+DN F+      +   +    NLR L L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 303 RANYLQ 308
               L 
Sbjct: 252 NDCLLS 257

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 38/185 (20%)

Query: 133 LDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLS 189
           LDLS+NN   ++   +    LT L  L L +NH +  I          L  LD+S+N L 
Sbjct: 44  LDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSS 248
             +  ++                       F+DL  LE+L +  N++     +   +++ 
Sbjct: 102 -TLDEFL-----------------------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 249 VEHLYLQNNALGGSIPNTFFRG----SALETLDLRDNNFSGRIPHQINEHSNLRALLLRA 304
           ++ LYL  N +    P    +       L  LDL  N    ++P        L A +   
Sbjct: 138 LQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD--LQKLPAWVKNG 193

Query: 305 NYLQG 309
            YL  
Sbjct: 194 LYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 45/191 (23%), Positives = 66/191 (34%), Gaps = 39/191 (20%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
               LDLSHN L+     W     T L  L L +N      L           IS  +F 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-----HLN---------FISSEAFV 85

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLVTN 126
                     +  L Y+++S N     +   + + +Q L  L +  N+        +  N
Sbjct: 86  P---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI-----VVVDRN 130

Query: 127 CF----SLIWLDLSNNN---FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL--LRSTE 177
            F     L  L LS N    F  ++  +   L +L LL L +N         L  L +  
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190

Query: 178 LMVLDISNNRL 188
              L + NN L
Sbjct: 191 KNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 28/173 (16%)

Query: 175 STELMVLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNIS 232
            +   +LD+S+N LS     W     + L  L +S N L   I  + F  + +L  L++S
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 233 ENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQ 290
            N+L         +L ++E L L NN +   +    F   + L+ L L  N  S R P +
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 291 INEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL 343
           +                         +L KL ++DLS N+L   +P      L
Sbjct: 155 LI--------------------KDGNKLPKLMLLDLSSNKL-KKLPLTDLQKL 186

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 9e-08
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)

Query: 207 MSKNLLE--GNIPVQFNDLLDLEILNISENNLS--GSMISTLNLSSVEHLYLQNNALGGS 262
             + L     ++P          +L++S NNLS   +  +   L+++  L L +N L   
Sbjct: 26  SKQQLPNVPQSLPS------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-F 78

Query: 263 IPNTFFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRANYLQGPIPHQLCRLRK 320
           I +  F     L  LDL  N+    +   +      L  LLL  N++     +    + +
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 321 LGIMDLSHNRL 331
           L  + LS N++
Sbjct: 138 LQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 415 LDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 472
           LDLSSN L   +   +  DLQ +  L L  N +   +   +F ++  ++ L LS N+++ 
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 473 QIPPQ----LTELHSLSKFDVSYNNLSGPIPDKEQFSTFD--ESSYRGNLHLCGPPINKS 526
           + P +      +L  L   D+S N L   +P     +      +  +  L+L   P+   
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPL----TDLQKLPAWVKNGLYLHNNPLECD 204

Query: 527 C 527
           C
Sbjct: 205 C 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 415 LDLSSNELTGNIPSEI--GDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLN 471
           LDLS N L+  + +E     L N+H L LS+N L+  I   +F  +  +  LDLS N L+
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 472 GQIPPQ-LTELHSLSKFDVSYNNLS 495
             +     ++L +L    +  N++ 
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIV 125

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 42/308 (13%), Positives = 88/308 (28%), Gaps = 59/308 (19%)

Query: 8   NLKYLDLSHNKL----AGNFPTWLLENNTKLEVLYLINNSFS-------GFQLTGAQHGL 56
           ++  L+LS N L    +      L      +  L L  N  S          L      +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 57  LSLDISKNSFTGELPQNMGIVLQK----LVYMNISKNSFEGNIPSSIAKM-----QGLRF 107
             LD+  N F+ +               +  +N+  N         + ++       +  
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 108 LDVSTNNF----AGELSQSLVTNCFSLIWLDLSNNNFD-------GQIFPNYMNLTQLQL 156
           L++  NN       EL++ L +   S+  LDLS N            IF +      +  
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS--IPNHVVS 229

Query: 157 LYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSG-------HIPSWMGNFSYLQIL 205
           L L  N   G     +K        L  + +  + +          + +   N   + ++
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 206 SMSKN-------------LLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHL 252
             +               + E +       LL+  ++   ++  +   ++      +   
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN--IPDELRES 347

Query: 253 YLQNNALG 260
                 L 
Sbjct: 348 IQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 46/312 (14%), Positives = 94/312 (30%), Gaps = 55/312 (17%)

Query: 1   KFLRHQFNLKYLDLSHNKL----AGNFPTWLLENNTKLEVLYLINNSFS--GFQ-----L 49
           +F      +  LDLS N L                  +  L L  NS            L
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 50  TGAQHGLLSLDISKNSFTGELPQNMGIVLQ----KLVYMNISKNSFEGNIPSSIAKM--- 102
                 + SL++S N  + +    +   L      +  +++  N F     S   +    
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 103 --QGLRFLDVSTNNF----AGELSQSLVTNCFSLIWLDLSNNNFD-------GQIFPNYM 149
               +  L++  N+     + EL Q L     ++  L+L  NN          +   +  
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS-- 193

Query: 150 NLTQLQLLYLDNNHFSGK----IKDGLLR-STELMVLDISNNRLSG----HIPSWMGNFS 200
               +  L L  N    K    +          ++ L++  N L G    ++     +  
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 201 YLQILSMSKNLLEGNIPVQFNDLLD-------LEILNISENNLSGSMISTL------NLS 247
           +LQ + +  ++++     Q   L         + +++ +   +  S    +         
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSG 313

Query: 248 SVEHLYLQNNAL 259
             +   L N  L
Sbjct: 314 KADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 54/355 (15%), Positives = 106/355 (29%), Gaps = 62/355 (17%)

Query: 118 ELSQSLVTNCFSLIWLDLSNNNFD-------GQIFPNYMNLTQLQLLYLDNNHFSGK--- 167
              +   +    +  LDLS NN          Q F N      +  L L  N    K   
Sbjct: 12  NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSD 69

Query: 168 -IKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF-----SYLQILSMSKNLLEGNIPVQF 220
            +   L      +  L++S N LS      +          + +L +  N        +F
Sbjct: 70  ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129

Query: 221 NDLL-----DLEILNISENNLS-------GSMISTLNLSSVEHLYLQNNALGGS------ 262
                     +  LN+  N+L          +++ +  ++V  L L+ N L         
Sbjct: 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLRGNNLASKNCAELA 188

Query: 263 ----IPNTFFRGSALETLDLRDNNFSGRIPHQINE-----HSNLRALLLRANYLQGPIPH 313
                        ++ +LDL  N    +   ++        +++ +L L  N L GP   
Sbjct: 189 KFLASIPA-----SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 314 QLCRLRK----LGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRD 369
            L  L+     L  + L ++ +                  + +  +D+ G ++       
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303

Query: 370 YYNS--TVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNEL 422
             N    +  + D   L        + F  K++       I + +     +   L
Sbjct: 304 ISNLIRELSGKADVPSLLNQC----LIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 23/231 (9%)

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
            +  ++ K S T  + QN    L  +  +  + +  + ++   I  +  +  L ++ N  
Sbjct: 26  TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 80

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLL 173
                   + N  +L WL L  N    +   +  +L +L+ L L++N     I D  GL+
Sbjct: 81  T---DIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHN----GISDINGLV 131

Query: 174 RSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233
              +L  L + NN+++    + +   + L  LS+  N +  +I      L  L+ L +S+
Sbjct: 132 HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 187

Query: 234 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNF 283
           N++S   +  L  L +++ L L +        N         T+   D + 
Sbjct: 188 NHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 23/233 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           ++  +  +++ +        ++    +  L+L  N  +  +       L  L + +N   
Sbjct: 47  SIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ-SLVTN 126
                     L+KL  +++  N    +I + +  +  L  L +  N     ++  ++++ 
Sbjct: 104 DLSSLKD---LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNK----ITDITVLSR 154

Query: 127 CFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDIS 184
              L  L L +N            LT+LQ LYL  N     I D   L     L VL++ 
Sbjct: 155 LTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELF 208

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
           +        +   N      +  +   L    P   +D  D E  N+  +   
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 47/289 (16%), Positives = 99/289 (34%), Gaps = 25/289 (8%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
                +L    +              ++ +   N+     Q       +  L ++ N  T
Sbjct: 25  ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT 81

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
              P      L+ L ++ + +N  + ++ SS+  ++ L+ L +  N  +     + + + 
Sbjct: 82  DIKPLAN---LKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS---DINGLVHL 133

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDISN 185
             L  L L NN            LT+L  L L++N    +I D   L   T+L  L +S 
Sbjct: 134 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLYLSK 187

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG-SMISTL 244
           N +S  + + +     L +L +             ++L+    +  ++ +L    +IS  
Sbjct: 188 NHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245

Query: 245 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE 293
                 ++          +   F       T+      F GR+   + E
Sbjct: 246 GDYEKPNVKWHLPEFTNEVSFIF---YQPVTIGKAKARFHGRVTQPLKE 291

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 15/183 (8%)

Query: 150 NLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSK 209
              +     L     +  +    L    +  +  +N+ +   +   +     +  L ++ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 210 NLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFF 268
           N L  +I     +L +L  L + EN +    +S+L +L  ++ L L++N +   I     
Sbjct: 78  NKLT-DIK-PLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGI-SDING-LV 131

Query: 269 RGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSH 328
               LE+L L +N  +      ++  + L  L L  N +   +P  L  L KL  + LS 
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 329 NRL 331
           N +
Sbjct: 188 NHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 19/178 (10%)

Query: 157 LYLDNNHFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
                      IK         E +  ++    ++  +       + +  +  + + ++ 
Sbjct: 7   TITVPT----PIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK- 59

Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL 273
           ++      L ++  L ++ N L+   I  L NL ++  L+L  N +   + +       L
Sbjct: 60  SVQ-GIQYLPNVTKLFLNGNKLT--DIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKL 114

Query: 274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
           ++L L  N  S  I   +     L +L L  N +       L RL KL  + L  N++
Sbjct: 115 KSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN 468
                  +L    +T  +     +L +I  +  + + +  S+ +    L  +  L L+ N
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGN 78

Query: 469 KLNGQIPPQLTELHSLSKFDVSYNNLS 495
           KL   I P L  L +L    +  N + 
Sbjct: 79  KLT-DIKP-LANLKNLGWLFLDENKVK 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 1e-09
 Identities = 68/465 (14%), Positives = 139/465 (29%), Gaps = 81/465 (17%)

Query: 116 AGELSQSLVTNC---FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL 172
           A ++  S    C   F + WL+L N N    +      L  LQ L               
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------LEMLQKLLY---QIDPNWTSRS 217

Query: 173 LRSTEL-MVLDISNNRLSGHIPSWMGNFSYLQILS--MSKNLLEGNIPVQFNDLLDLEIL 229
             S+ + + +      L   + S       L +L    +           FN  L  +IL
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNA-----FN--LSCKIL 269

Query: 230 NISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPH 289
             +       +   L+ ++  H+ L ++++                L    +     +P 
Sbjct: 270 LTTRFK---QVTDFLSAATTTHISLDHHSMT------LTPDEVKSLLLKYLDCRPQDLPR 320

Query: 290 QINEHS---------NLRALLLRANYLQGPIPHQLCRLRKLGIMDLS---HNRLYGS--- 334
           ++   +         ++R  L   +  +     +L  + +  +  L    + +++     
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 335 ------IPACITNSLFWKVGNESLYQLDEEGAD----VGNVDIRDYYNSTVQLRLDESDL 384
                 IP  I  SL W    + +        +       V+ +    ST+   +    L
Sbjct: 381 FPPSAHIPT-ILLSLIW---FDVIKSDVMVVVNKLHKYSLVE-KQPKESTI--SIPSIYL 433

Query: 385 RWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYN 444
              VK      + ++  + Y   I +     DL    L     S IG     H  N+ + 
Sbjct: 434 ELKVKLENEYALHRSIVDHYN--IPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHP 487

Query: 445 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE-LHSLSKFDVSYNNLSGPIPDKEQ 503
                    F + + +E   + H+         +   L  L  +   Y      I D + 
Sbjct: 488 ERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQLKFYK-PY------ICDNDP 539

Query: 504 FSTFDESSYRGNLHLCGPPINKS-CTNLPKL-LEPSSKGAEDESA 546
                 ++    L      +  S  T+L ++ L    +   +E+ 
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 60/446 (13%), Positives = 129/446 (28%), Gaps = 142/446 (31%)

Query: 214 GNIPVQFNDLL---------DLEILNISENNLSGSMISTLNLSSVEHLYLQNNAL----- 259
           G    Q+ D+L         + +  ++ +        S L+   ++H+ +  +A+     
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQD-----MPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 260 --------GGSIPNTFFRGSALET--------LDLRDNNFSGRIPHQINEHSNLRALLLR 303
                      +   F     L          +       S      I +   L      
Sbjct: 67  LFWTLLSKQEEMVQKFV-EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----- 120

Query: 304 ANYLQGPIPHQLCRLRKL-----GIMDLSHNR---LYG-----------------SIPAC 338
            N  Q    + + RL+        +++L   +   + G                  +   
Sbjct: 121 -NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 339 ITNSLFW-KVGNES------------LYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLR 385
           +   +FW  + N +            LYQ+D       N   R  ++S ++LR+      
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQID------PNWTSRSDHSSNIKLRIHS---- 229

Query: 386 WLVKQVEVNFMTKNRYE-SYKGVIL------EHMAGLDLSSNEL--TGNIPSEIGDLQNI 436
             ++      +    YE     ++L      +     +LS   L  T         L   
Sbjct: 230 --IQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAA 284

Query: 437 HGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN---GQIPPQLTELHSLSKFDVSYNN 493
              ++S +  S ++          E   L    L+     +P ++   +           
Sbjct: 285 TTTHISLDHHSMTLTPD-------EVKSLLLKYLDCRPQDLPREVLTTNPRR-------- 329

Query: 494 LSGPIPD--KEQFSTFDESSYRGNLHLCGPPINKSCTNLPKLLEPSSKGAEDESAVDMVA 551
           LS  I +  ++  +T+D   +     L    I +S  N+   LEP+          +   
Sbjct: 330 LSI-IAESIRDGLATWDNWKHVNCDKL--TTIIESSLNV---LEPA----------EYRK 373

Query: 552 FYWSFV--ASYVTLMLGLLAILWINP 575
            +           +   LL+++W + 
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDV 399

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 31/189 (16%)

Query: 133 LDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFS---GKIKDGLLRSTELMVLDISNNRL 188
           LDL +N     +    +  LT+L+LLYL++N        I   L     L  L +++N+L
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL---KNLETLWVTDNKL 97

Query: 189 SGHIPSWMGNFSY---LQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL 244
              +P   G F     L  L + +N L+ ++P + F+ L  L  L++  N L      +L
Sbjct: 98  Q-ALPI--GVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-----SL 148

Query: 245 ------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINEH-SN 296
                  L+S++ L L NN L   +P   F   + L+TL L +N    R+P    +    
Sbjct: 149 PKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206

Query: 297 LRALLLRAN 305
           L+ L L+ N
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
           +     +D S+ +L+  IPS     +  + L +  N L       F+ L  L +L +++N
Sbjct: 15  NNNKNSVDCSSKKLTA-IPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71

Query: 235 NLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRI 287
            L      TL       L ++E L++ +N L  ++P   F     L  L L  N     +
Sbjct: 72  KL-----QTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLK-SL 124

Query: 288 PHQINEH-SNLRALLLRANYLQGPIPHQLC-RLRKLGIMDLSHNRLYGSIPACITNSL 343
           P ++ +  + L  L L  N LQ  +P  +  +L  L  + L +N+L   +P    + L
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKL 180

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 39/186 (20%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
            L+ L L+ NKL    P  + +    LE L++ +N     +L                  
Sbjct: 62  KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN-----KLQ----------------- 98

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLVTN 126
             LP  +   L  L  + + +N  + ++P  +   +  L +L +  N       QSL   
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-----QSLPKG 151

Query: 127 CF----SLIWLDLSNNNFDGQIFPNYM--NLTQLQLLYLDNNHFSGKIKDGLLRSTELMV 180
            F    SL  L L NN    +  P      LT+L+ L LDNN      +       +L +
Sbjct: 152 VFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 181 LDISNN 186
           L +  N
Sbjct: 210 LQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 12/139 (8%)

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF---SYLQILSM 207
                L L+NN F+     G+ +   +L  ++ SNN+++  I    G F   S +  + +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILL 88

Query: 208 SKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPN 265
           + N LE N+  + F  L  L+ L +  N ++     +   LSSV  L L +N +  ++  
Sbjct: 89  TSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAP 146

Query: 266 -TFFRGSALETLDLRDNNF 283
             F    +L TL+L  N F
Sbjct: 147 GAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 180 VLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG 238
            L ++NN  +    + +      L+ ++ S N +       F     +  + ++ N L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 239 SMISTL------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI 291
                +       L S++ L L++N +   + N  F G S++  L L DN  +  +    
Sbjct: 95  ----NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

Query: 292 NEH-SNLRALLLRAN 305
            +   +L  L L AN
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 50/170 (29%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
               L L++N+      T + +   +L  +   NN     ++T         DI + +F 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-----KIT---------DIEEGAFE 78

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSI-AKMQGLRFLDVSTNNFAGELSQSLVTN 126
           G            +  + ++ N  E N+   +   ++ L+ L + +N         +  +
Sbjct: 79  G---------ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI-----TCVGND 123

Query: 127 CF----SLIWLDLSNNN--------FDGQIFPNYMNLTQLQLLYLDNNHF 164
            F    S+  L L +N         FD         L  L  L L  N F
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFD--------TLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 415 LDLSSNELTGNIPSEI-GDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 472
           L L++NE T    + I   L  +  +N S N ++  I E +F     +  + L+ N+L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95

Query: 473 QIPPQL-TELHSLSKFDVSYNNLS 495
            +  ++   L SL    +  N ++
Sbjct: 96  -VQHKMFKGLESLKTLMLRSNRIT 118

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 9/225 (4%)

Query: 273 LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY 332
           L    L D               + +  +L  +  +           +L   +LS  +  
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA-TDEQLFRCELSVEKST 362

Query: 333 GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQL--RLDESDLRWLVKQ 390
                  +     ++  E+ + L      +  +D   Y   T+Q    L   D       
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422

Query: 391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI 450
            ++           K      +  L L+  +LT  +   +  L  +  L+LS+N L  ++
Sbjct: 423 DDLRSKFLLENSVLKMEY-ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-AL 478

Query: 451 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           P + + L+ +E L  S N L   +   +  L  L +  +  N L 
Sbjct: 479 PPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 39/214 (18%), Positives = 70/214 (32%), Gaps = 10/214 (4%)

Query: 96  PSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQ 155
               A  + L   ++S       + QS + +C  L  L+  N      I      L  L 
Sbjct: 342 CRDSATDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 156 LLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN 215
                  +FS       +       LD   ++           ++ +++L ++   L   
Sbjct: 400 YEKETLQYFSTLKA---VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-V 455

Query: 216 IPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALET 275
           +      LL +  L++S N L     +   L  +E L   +NAL  ++         L+ 
Sbjct: 456 LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG-VANLPRLQE 512

Query: 276 LDLRDNNFSG-RIPHQINEHSNLRALLLRANYLQ 308
           L L +N          +     L  L L+ N L 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 78  LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL--VTNCFSLIWLDL 135
           L  + ++++S N     +P ++A ++ L  L  S N       +++  V N   L  L L
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL-----ENVDGVANLPRLQELLL 515

Query: 136 SNNNFDG-QIFPNYMNLTQLQLLYLDNNHFS 165
            NN           ++  +L LL L  N   
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 29/207 (14%), Positives = 54/207 (26%), Gaps = 25/207 (12%)

Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFF 268
           +         +L  L I         +  L       L  + +L +  + L   +    F
Sbjct: 22  DSLHHLPGAENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAF 76

Query: 269 RG-SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS 327
                L  L+L  N     +  +  +  +L+ L+L  N L     H  C LR L   +  
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEE 130

Query: 328 HNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLR-----LDES 382
                                  +   +      V N  +       V LR         
Sbjct: 131 GLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDV--GDDVLLRCQVEGRGLE 188

Query: 383 DLRWLVKQVEVNFMTKNRYESYKGVIL 409
              W++ ++E +             + 
Sbjct: 189 QAGWILTELEQSATVMKSGGLPSLGLT 215

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 176 TELMVLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISE 233
             L  L I N +   H+          L+ L++ K+ L   +    F+    L  LN+S 
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF 89

Query: 234 NNLSGSMISTLNLSSVEHLYLQNNAL 259
           N L      T+   S++ L L  N L
Sbjct: 90  NALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 7e-07
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 425 NIPSEIGDLQNIHGLNLSYNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ-LTELH 482
           +    +   +N+  L +        +       L  + +L +  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 483 SLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLP 531
            LS+ ++S+N L           T    S +  L L G P++ SC    
Sbjct: 81  RLSRLNLSFNALESLSWK-----TVQGLSLQ-ELVLSGNPLHCSCALRW 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 409 LEHMAGLDLSSNELTGNIPSE-IGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
            E++  L + + +   ++    +  L  +  L +  + L    P++F     +  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 468 NKLNGQIPPQLTELHSLSKFDVSYNNL 494
           N L   +  +  +  SL +  +S N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 94  NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPN-YMNLT 152
           +    +   + L  L +        L    +     L  L +  +     + P+ +    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 153 QLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL 188
           +L  L L  N     +    ++   L  L +S N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 152 TQLQLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF---SYLQILSM 207
             +  + L+ N     I  G      +L  +D+SNN++S  +      F     L  L +
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVL 87

Query: 208 SKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPN 265
             N +   +P   F  L  L++L ++ N ++   +    +L ++  L L +N L      
Sbjct: 88  YGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 266 TFFRGSALETLDLRDNNF 283
           TF    A++T+ L  N F
Sbjct: 147 TFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 17/135 (12%)

Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSG 238
            + +  N +    P     +  L+ + +S N +   +    F  L  L  L +  N ++ 
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 239 SMISTL------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQI 291
                L       L S++ L L  N +   +    F+    L  L L DN     I    
Sbjct: 94  ----ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

Query: 292 NEH-SNLRALLLRAN 305
                 ++ + L  N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 11/116 (9%)

Query: 415 LDLSSNELTGNIPSEIGD-LQNIHGLNLSYNFLSGSIPES-FSNLKMIESLDLSHNKLNG 472
           +DLS+N+++  +  +    L++++ L L  N ++  +P+S F  L  ++ L L+ NK+N 
Sbjct: 61  IDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN- 117

Query: 473 QIPPQL-TELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 527
            +      +LH+L+   +  N L   I       TF        +HL   P    C
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQT-IAK----GTFSPLRAIQTMHLAQNPFICDC 168

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 11/82 (13%)

Query: 418 SSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP- 476
               LT  IP+ +   + I  + L  N +    P +FS  K +  +DLS+N+++ ++ P 
Sbjct: 19  RGKGLT-EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPD 74

Query: 477 ---QLTELHSLSKFDVSYNNLS 495
               L  L+SL    +  N ++
Sbjct: 75  AFQGLRSLNSL---VLYGNKIT 93

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 130 LIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS 189
            + L       +  +      L   + L L  N+   KI   L     L +L +  N + 
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK 83

Query: 190 GHIPSWMGNFSYLQILSMSKNL---LEGNIPVQFNDLLDLEILNISENNLSG-SMISTL- 244
             I +       L+ L +S N    L G        L++L +L +S N ++    I  L 
Sbjct: 84  -KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 245 NLSSVEHLYLQNN 257
            L  +E L L  N
Sbjct: 138 ALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 19/140 (13%)

Query: 80  KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN 139
           + V ++      E  + ++++ ++  + L +STNN       S ++   +L  L L  N 
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNL 81

Query: 140 FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNF 199
              +I         L+ L++  N  +  +  G+ +   L VL +SNN+++        N+
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT--------NW 130

Query: 200 SYLQILSMSKNL----LEGN 215
             +  L+    L    L GN
Sbjct: 131 GEIDKLAALDKLEDLLLAGN 150

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 41/199 (20%), Positives = 78/199 (39%), Gaps = 19/199 (9%)

Query: 135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDISNNRLSGHI 192
           +       Q+FP+   L       L        + D       + +   +  N+ +   +
Sbjct: 3   IQRPTPINQVFPDP-GLANAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNIQ-SL 56

Query: 193 PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHL 252
              M  F+ L+ L +S N +  ++     DL  LE L+++ N L    ++ +  + +  L
Sbjct: 57  AG-MQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLKN--LNGIPSACLSRL 111

Query: 253 YLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP 312
           +L NN L     ++      LE L +R+N     +   +   S L  L L  N +     
Sbjct: 112 FLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG 167

Query: 313 HQLCRLRKLGIMDLSHNRL 331
             L RL+K+  +DL+  + 
Sbjct: 168 --LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 16/178 (8%)

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL 188
           + +  +L   +       +   L+ +Q    DN++    +  G+   T L  L +S+N++
Sbjct: 20  NAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQI 75

Query: 189 SGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLS 247
           S   P  + + + L+ LS+++N L+    +       L  L +  N L      +L +L 
Sbjct: 76  SDLSP--LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--TDSLIHLK 128

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRAN 305
           ++E L ++NN L  SI       S LE LDL  N  +      +     +  + L   
Sbjct: 129 NLEILSIRNNKL-KSIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 39/244 (15%), Positives = 73/244 (29%), Gaps = 52/244 (21%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           N    +L    +         +  + ++     N++            L  L +S N   
Sbjct: 20  NAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN--- 73

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                             IS         S +  +  L  L V+ N     L        
Sbjct: 74  -----------------QISD-------LSPLKDLTKLEELSVNRNR----LKNLNGIPS 105

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD--GLLRSTELMVLDISN 185
             L  L L NN    +   + ++L  L++L + NN    K+K    L   ++L VLD+  
Sbjct: 106 ACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNN----KLKSIVMLGFLSKLEVLDLHG 159

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN--NLSGSMIST 243
           N ++      +     +  + ++              +     L I+    +  G  IS 
Sbjct: 160 NEITNTGG--LTRLKKVNWIDLTGQ------KCVNEPVKYQPELYITNTVKDPDGRWISP 211

Query: 244 LNLS 247
             +S
Sbjct: 212 YYIS 215

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 27/165 (16%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS---GKIKDGLLRSTELMVLDISNNRLS 189
           LDL +          +  LT+L  L LD N        + D L   TEL  L ++NN+L+
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGTLGLANNQLA 96

Query: 190 GHIPSWMGNFSY---LQILSMSKNLLEGNIPVQ-FNDLLDLEILNISENNLSGSMISTL- 244
             +P   G F +   L  L +  N L+  +P   F+ L  L+ L ++ N L      ++ 
Sbjct: 97  S-LPL--GVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-----SIP 147

Query: 245 -----NLSSVEHLYLQNNALGGSIP-NTFFRGSALETLDLRDNNF 283
                 L++++ L L  N L  S+P   F R   L+T+ L  N F
Sbjct: 148 AGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSY---LQILSMSKNL 211
           + L L +   +          T+L  L++  N+L   + +  G F     L  L ++ N 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSA--GVFDDLTELGTLGLANNQ 94

Query: 212 LEGNIPVQFNDLLDLEILNISENNLSGSMISTL------NLSSVEHLYLQNNALGGSIPN 265
           L       F+ L  L+ L +  N L      +L       L+ ++ L L  N L  SIP 
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQL-QSIPA 148

Query: 266 TFFRG-SALETLDLRDNNFSGRIPHQINEH-SNLRALLLRAN 305
             F   + L+TL L  N     +PH   +    L+ + L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 43/328 (13%), Positives = 92/328 (28%), Gaps = 62/328 (18%)

Query: 10  KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFS-------GFQLTGAQHGLLSLDIS 62
           + LD            +  E  + L  L L     +          L   +H L  ++++
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA 109

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQS 122
                    + +  V  +   + +  NS                    +      +L   
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSLG----------------PEA----CKDLRDL 149

Query: 123 LVTNCFSLIWLDLSNNNFDGQ----IFPNYMNLTQLQLLYLDNNHFSGK----IKDGLLR 174
           L+ +   +  L LSNN         +       T +  L L +     +    +   L R
Sbjct: 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209

Query: 175 STELMVLDISNNRLSG----HIPSWMGNFSYLQILSMSKN---------LLEGNIPVQFN 221
           + +L  L+++ N         +         L++L +  N         L +     +  
Sbjct: 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269

Query: 222 DLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN 281
             + + +   +  +   S+I +    ++                   R   L   DL D+
Sbjct: 270 ARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV----------QRHLELLLRDLEDS 319

Query: 282 NFS----GRIPHQINEHSNLRALLLRAN 305
             +     R    +     +RALL +  
Sbjct: 320 RGATLNPWRKAQLLRVEGEVRALLEQLG 347

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/216 (14%), Positives = 66/216 (30%), Gaps = 54/216 (25%)

Query: 8   NLKYLDLSHNKL----AGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISK 63
             + L L  N L      +    LL +  ++  L L NN  +     G     L   ++ 
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA---AGVAV--LMEGLAG 181

Query: 64  NSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKM----QGLRFLDVSTNNF---- 115
           N                + ++++            +A      + L+ L+V+ N      
Sbjct: 182 N--------------TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFD-------GQIFPNYMNLTQLQLLYLDNNHFSGK- 167
           A  L+++   +  SL  L L  N            +        ++ +   +    S   
Sbjct: 228 ALALARAAREHP-SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286

Query: 168 --------------IKDGLLRSTELMVLDISNNRLS 189
                          +  + R  EL++ D+ ++R +
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGA 322

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLL-RSTELMVLDISNNRLSGH 191
           L L +N         + +L  L+ LYL +N     +  G+    T+L VLD+  N+L+  
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV- 102

Query: 192 IPSWMGNF---SYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLS 247
           +PS    F    +L+ L M  N L   +P     L  L  L + +N L          LS
Sbjct: 103 LPS--AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 248 SVEHLYLQNN 257
           S+ H YL  N
Sbjct: 160 SLTHAYLFGN 169

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 25/125 (20%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
           LD   +N DG+I         L+ L L N      +   L +  +L  L++S NR+ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 193 PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHL 252
                    L  L++S N L+        D+  LE L                L  ++ L
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK--------DISTLEPLK--------------KLECLKSL 125

Query: 253 YLQNN 257
            L N 
Sbjct: 126 DLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 396 MTKNRYESYKGVILEHMAGLDLSSNELT-GNIPSEIGDLQNIHGLNLSYNFLSGSIPESF 454
           M +  +   +      +  L L + +   G I     +  N+  L+L    L  S+  + 
Sbjct: 10  MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL 67

Query: 455 SNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
             L  ++ L+LS N++ G +     +L +L+  ++S N L 
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 150 NLTQLQLLYLDNNHFS-GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSY---LQIL 205
             + ++ L LDN+  + GK++       EL  L   N  L     + + N      L+ L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKL 69

Query: 206 SMSKNLLEGNIPVQFNDLLDLEILNISENNLSG-SMISTL-NLSSVEHLYLQNN 257
            +S N + G + V      +L  LN+S N +   S I  L  L +++ L L N 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           LD S +   G +     + + +  L+     L+ SI  +   L  ++ L+LS N+++G +
Sbjct: 24  LDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGL 80

Query: 475 PPQLTELHSLSKFDVSYNNLS 495
                +  +L+  ++S N + 
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIK 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 25/133 (18%)

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
           TN      LDL        I      L Q   +   +N    K+ DG      L  L ++
Sbjct: 16  TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVN 72

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
           NNR+             L  L ++ N L         +L DL+ L               
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLV--------ELGDLDPLA-------------- 110

Query: 245 NLSSVEHLYLQNN 257
           +L S+ +L +  N
Sbjct: 111 SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           LDL   ++   I +    L     ++ S N +   + + F  L+ +++L +++N++    
Sbjct: 24  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIG 80

Query: 475 PPQLTELHSLSKFDVSYNNLS 495
                 L  L++  ++ N+L 
Sbjct: 81  EGLDQALPDLTELILTNNSLV 101

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
             E +  ++    ++    +     + +  +  + + ++ ++      L ++  L +  N
Sbjct: 18  FAETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGN 73

Query: 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRDNNFSGRIPHQINE 293
            L   + +   L+++ +L L  N L  S+PN  F   + L+ L L +N     +P  + +
Sbjct: 74  KLH-DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD 130

Query: 294 H-SNLRALLLRANYLQGPIPHQLC-RLRKLGIMDLSHNRLYGSIPA 337
             +NL  L L  N LQ  +P  +  +L  L  +DLS+N+L  S+P 
Sbjct: 131 KLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL-QSLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 27/166 (16%)

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS---GKIKDGLLRSTELMVLDISN 185
           ++ +L L  N            LT L  L L  N        + D L   T L  L +  
Sbjct: 64  NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKL---TNLKELVLVE 118

Query: 186 NRLSGHIPSWMGNFSYL---QILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIS 242
           N+L   +P   G F  L     L+++ N L+      F+ L +L  L++S N L      
Sbjct: 119 NQLQS-LPD--GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ----- 170

Query: 243 TL------NLSSVEHLYLQNNALGGSIPN-TFFRGSALETLDLRDN 281
           +L       L+ ++ L L  N L  S+P+  F R ++L+ + L DN
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 215

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 6/88 (6%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQ 473
           L L  N+ T  +P E+ + +++  ++LS N +S ++   SFSN+  + +L LS+N+L   
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 474 IPPQLTE-LHSLSKFDVSYNNLSGPIPD 500
           IPP+  + L SL    +  N++S  +P+
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISV-VPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 16/111 (14%)

Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSY---LQILSMSKNL 211
             LYLD N F+  +   L     L ++D+SNNR+S  + +   +FS    L  L +S N 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN--QSFSNMTQLLTLILSYNR 89

Query: 212 LEGNIPV-QFNDLLDLEILNISENNLS----GSMISTLNLSSVEHLYLQNN 257
           L   IP   F+ L  L +L++  N++S    G+     +LS++ HL +  N
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN---DLSALSHLAIGAN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 25/199 (12%)

Query: 158 YLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE---- 213
             D +  +  I +   +      L   +        SW+       +L     L      
Sbjct: 121 GEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK 180

Query: 214 --GNIPVQFNDLLDLEILNISENNLSGSMISTL---NLSSVEHLYL---QNNALGGSIPN 265
              N+ +      +L+ L I    L  S++  +   +L ++E L L     +       N
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240

Query: 266 TFF------RGSALETLDLRDNNFSGRIPHQINEH---SNLRALLLRANYLQG----PIP 312
            F       R   L+ L + D      +     E      L  + + A  L       + 
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300

Query: 313 HQLCRLRKLGIMDLSHNRL 331
             + +++ L  +++ +N L
Sbjct: 301 DHVDKIKHLKFINMKYNYL 319

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 155 QLLYLDNNHFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF---SYLQILSMSKN 210
             L L++N       DGL      L+ L++  N+L+G I      F   S++Q L + +N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEP--NAFEGASHIQELQLGEN 88

Query: 211 LLEGNIPV-QFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNN 257
            ++  I    F  L  L+ LN+ +N +S  M  +  +L+S+  L L +N
Sbjct: 89  KIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	580
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.97

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.7e-64  Score=557.45  Aligned_cols=522  Identities=33%  Similarity=0.453  Sum_probs=429.5

Q ss_pred             cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717            3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV   82 (580)
Q Consensus         3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   82 (580)
                      +.++++|++|++++|.+++.+|..+ .++++|++|++++|.+++......+++|++|++++|.+++.+|..++..+++|+
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~  297 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT  297 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred             cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCC
Confidence            5667778888888888776666544 478888888888887776433347788999999999998889988876679999


Q ss_pred             EEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCC-CCCEEeccC
Q 036717           83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLT-QLQLLYLDN  161 (580)
Q Consensus        83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~  161 (580)
                      +|++++|++++.+|..++++++|++|++++|.+++.+|...+..+++|++|++++|.+++.+|..+..++ +|++|++++
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~  377 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS  377 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCS
T ss_pred             EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccC
Confidence            9999999999999999999999999999999999899988789999999999999999988899888887 999999999


Q ss_pred             ccccccccccccC--CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccc
Q 036717          162 NHFSGKIKDGLLR--STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS  239 (580)
Q Consensus       162 n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  239 (580)
                      |.+++..+..+..  +++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.
T Consensus       378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  457 (768)
T 3rgz_A          378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE  457 (768)
T ss_dssp             SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc
Confidence            9999888888776  88999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCC
Q 036717          240 MISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRL  318 (580)
Q Consensus       240 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  318 (580)
                      .+..+ .+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|.+++.+|..++.+
T Consensus       458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred             CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence            77766 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEeeCCeecCccChhhhhhcccccCC-CC-ccccccCCCCCCCccchhhcccccccccccchhhhhccccE----
Q 036717          319 RKLGIMDLSHNRLYGSIPACITNSLFWKVGN-ES-LYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVE----  392 (580)
Q Consensus       319 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  392 (580)
                      ++|+.|++++|+++|.+|.++.......... .. ................ ...............+..+.....    
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~  616 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH-GAGNLLEFQGIRSEQLNRLSTRNPCNIT  616 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC-SSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc-ccccccccccccchhhhccccccccccc
Confidence            9999999999999999999887643211100 00 0000000000000000 000000000000000000000000    


Q ss_pred             EEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccc
Q 036717          393 VNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNG  472 (580)
Q Consensus       393 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  472 (580)
                      ...........+  ..+++|+.|||++|+++|.+|.+|+.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|
T Consensus       617 ~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          617 SRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             SCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             cceecccCchhh--hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence            000000000111  226889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCCCCCCCCCCCCC
Q 036717          473 QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTN  529 (580)
Q Consensus       473 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C~~  529 (580)
                      .+|+.+..+++|++||+++|+++|.+|...+|.++...+|.||+++||+|.. .|..
T Consensus       695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~  750 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDP  750 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCS
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCC
Confidence            9999999999999999999999999999999999999999999999999986 8865

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.4e-56  Score=494.50  Aligned_cols=484  Identities=30%  Similarity=0.431  Sum_probs=352.2

Q ss_pred             ccCCCCCEEECCCCCCcccCchHH--hhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCC
Q 036717            4 RHQFNLKYLDLSHNKLAGNFPTWL--LENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKL   81 (580)
Q Consensus         4 ~~~~~L~~L~Ls~n~i~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L   81 (580)
                      .++++|++|++++|++++..|..+  +.++++|++|++++|.+++......+++|++|++++|.+.+.+|.  +..+++|
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L  225 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSAL  225 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCC
Confidence            344555555555555554443331  345666666666666665543334677788888888887766665  3467888


Q ss_pred             cEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCC-CCCCEEecc
Q 036717           82 VYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNL-TQLQLLYLD  160 (580)
Q Consensus        82 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~  160 (580)
                      ++|++++|.+++.+|..++++++|++|++++|.+++.+|..   .+++|++|++++|.+++.+|..+... ++|++|+++
T Consensus       226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls  302 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS  302 (768)
T ss_dssp             CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred             CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence            88888888888777888888888888888888877666652   67778888888888777777776654 788888888


Q ss_pred             CccccccccccccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEcccCcCCCcCchhccCCC-CCcEEEccCCcCcc
Q 036717          161 NNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW-MGNFSYLQILSMSKNLLEGNIPVQFNDLL-DLEILNISENNLSG  238 (580)
Q Consensus       161 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~  238 (580)
                      +|.+++..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++
T Consensus       303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~  382 (768)
T 3rgz_A          303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG  382 (768)
T ss_dssp             SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred             CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence            88887777878888888888888888877666654 77788888888888888777777777766 78888888887776


Q ss_pred             ccCCcc-C--CCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccc
Q 036717          239 SMISTL-N--LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQL  315 (580)
Q Consensus       239 ~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  315 (580)
                      ..+..+ .  +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|.+++.+|..+
T Consensus       383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  462 (768)
T 3rgz_A          383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL  462 (768)
T ss_dssp             ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence            555544 2  6678888888888877778788888888888888888877778888888888888888888887788888


Q ss_pred             cCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhh--cccccccccccchhhhhccccEE
Q 036717          316 CRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDY--YNSTVQLRLDESDLRWLVKQVEV  393 (580)
Q Consensus       316 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  393 (580)
                      ..+++|+.|++++|++++.+|..+...       ..++.+++.++.+....+..+  ...+..+.+.             
T Consensus       463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l-------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-------------  522 (768)
T 3rgz_A          463 MYVKTLETLILDFNDLTGEIPSGLSNC-------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLS-------------  522 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGC-------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC-------------
T ss_pred             cCCCCceEEEecCCcccCcCCHHHhcC-------CCCCEEEccCCccCCcCChHHhcCCCCCEEECC-------------
Confidence            888888888888888887777776654       355566666665553322211  1222333333             


Q ss_pred             EEeeccccc-eecc--cccccccEEEccCCcceeeCCc------------------------------------------
Q 036717          394 NFMTKNRYE-SYKG--VILEHMAGLDLSSNELTGNIPS------------------------------------------  428 (580)
Q Consensus       394 ~~~~~~~~~-~~~~--~~l~~L~~L~Ls~n~l~~~~~~------------------------------------------  428 (580)
                          .+.+. ..+.  ..+++|+.|++++|.++|.+|.                                          
T Consensus       523 ----~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          523 ----NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             ----SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             ----CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence                33322 1111  2256667777777766655554                                          


Q ss_pred             ----------------------------ccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcC
Q 036717          429 ----------------------------EIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE  480 (580)
Q Consensus       429 ----------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  480 (580)
                                                  .++.+++|++|+|++|+++|.+|..|+++++|+.|+|++|+++|.+|+.+.+
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  678 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD  678 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence                                        4455688999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEeccCCcccccCCCC-cccCCcCccccCCCC
Q 036717          481 LHSLSKFDVSYNNLSGPIPDK-EQFSTFDESSYRGNL  516 (580)
Q Consensus       481 l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  516 (580)
                      +++|++|||++|+++|.+|.. ..+..+...++.+|.
T Consensus       679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            999999999999999999975 445556666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-52  Score=463.82  Aligned_cols=484  Identities=20%  Similarity=0.195  Sum_probs=268.1

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCC---CCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGF---QLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY   83 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   83 (580)
                      +++++|+|++|.+++..|. .+.++++|++|+|++|...+.   .....+++|++|+|++|.+.+..|..+ .++++|++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~  101 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFE  101 (844)
T ss_dssp             TTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCC
T ss_pred             CCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCE
Confidence            5677777777777633333 345777777777777743321   112356677777777777764444444 36777777


Q ss_pred             EEcccCcCccccchh--hhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCC--CCCCEEec
Q 036717           84 MNISKNSFEGNIPSS--IAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNL--TQLQLLYL  159 (580)
Q Consensus        84 L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l  159 (580)
                      |++++|.+++..|..  ++++++|++|++++|.+++..+...++++++|++|++++|.+++..+..+..+  ++|+.|++
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            777777776655544  67777777777777777644443445677777777777777766666666655  67777777


Q ss_pred             cCccccccccccccCCCC------CCEEEcccCCCCCCCchhhhcC---CCCCEEEcccC---------cCCCcCchhcc
Q 036717          160 DNNHFSGKIKDGLLRSTE------LMVLDISNNRLSGHIPSWMGNF---SYLQILSMSKN---------LLEGNIPVQFN  221 (580)
Q Consensus       160 ~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n---------~l~~~~~~~~~  221 (580)
                      ++|.+.+..+..+..+++      |+.|++++|.+.+..+..+...   ..++.+.++.+         .+.+.....|.
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~  261 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA  261 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence            777776666655554444      7777777776655444433321   12222222211         01111111122


Q ss_pred             CC--CCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcc
Q 036717          222 DL--LDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLR  298 (580)
Q Consensus       222 ~l--~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  298 (580)
                      ++  ++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++..+..|..+++|++|++++|++++..|..+..+++|+
T Consensus       262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred             ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence            21  344555555555444443333 444555555555555444444444455555555555555444444444555555


Q ss_pred             eeecccccccccCcccccCCCCCCEEEeeCCeecC------------------ccChhhhhhcccccCCCCccccccCCC
Q 036717          299 ALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG------------------SIPACITNSLFWKVGNESLYQLDEEGA  360 (580)
Q Consensus       299 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~p~~~~~~~~~~~~~~~~~~l~~~~~  360 (580)
                      .|++++|.+++..+..|..+++|+.|++++|.+++                  .+|...          ..+..+++..+
T Consensus       342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~----------~~l~~L~ls~N  411 (844)
T 3j0a_A          342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN----------LTANLIHLSEN  411 (844)
T ss_dssp             EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCC----------TTCCEEECCSC
T ss_pred             EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccc----------cccceeecccC
Confidence            55555555544444444445555555555554432                  222211          12333444444


Q ss_pred             CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecc----cccccccEEEccCCcce-----eeCCcccc
Q 036717          361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKG----VILEHMAGLDLSSNELT-----GNIPSEIG  431 (580)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~L~~L~Ls~n~l~-----~~~~~~~~  431 (580)
                      .+...+...+..              -...++...+..+.+.....    ..+++|+.|++++|.++     +..+..|.
T Consensus       412 ~l~~l~~~~~~~--------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  477 (844)
T 3j0a_A          412 RLENLDILYFLL--------------RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE  477 (844)
T ss_dssp             CCCSSTTHHHHT--------------TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred             ccccCchhhhhh--------------cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence            443332221110              01223334444444432221    12566777777777775     33445667


Q ss_pred             cccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccc
Q 036717          432 DLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESS  511 (580)
Q Consensus       432 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  511 (580)
                      ++++|+.|+|++|.+++.+|..|.++++|+.|+|++|++++..|..+.  ++|+.|||++|++++..|..  +..+...+
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~  553 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLD  553 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEE
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEE
Confidence            777777777777777777777777777777777777777766665555  67777777777777766643  44555666


Q ss_pred             cCCCCCCCC
Q 036717          512 YRGNLHLCG  520 (580)
Q Consensus       512 ~~~n~~lc~  520 (580)
                      +.+|++.|+
T Consensus       554 l~~Np~~C~  562 (844)
T 3j0a_A          554 ITHNKFICE  562 (844)
T ss_dssp             EEEECCCCS
T ss_pred             ecCCCcccc
Confidence            667777663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.6e-51  Score=441.38  Aligned_cols=471  Identities=19%  Similarity=0.153  Sum_probs=330.0

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM   84 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L   84 (580)
                      +++++|++++|.++ .++...+.++++|++|+|++|.++++..  ...+++|++|++++|.+++..|..+ ..+++|++|
T Consensus        33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L  110 (606)
T 3t6q_A           33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHL  110 (606)
T ss_dssp             TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-SSCTTCCEE
T ss_pred             CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-cccccccEe
Confidence            36788888888887 4444445688888888888888876532  2467888888888888875445444 478888888


Q ss_pred             EcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCC--EEeccCc
Q 036717           85 NISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQ--LLYLDNN  162 (580)
Q Consensus        85 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~l~~n  162 (580)
                      ++++|++++..+..++++++|++|++++|.+.+..... +..+++|++|++++|.+++..+..|..+++|+  +|++++|
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence            88888888766777888888888888888887422122 23578888888888888877677777888888  7888888


Q ss_pred             cccccccccccCC---------------------------------------------------CCCCEEEcccCCCCCC
Q 036717          163 HFSGKIKDGLLRS---------------------------------------------------TELMVLDISNNRLSGH  191 (580)
Q Consensus       163 ~l~~~~~~~l~~l---------------------------------------------------~~L~~L~L~~n~l~~~  191 (580)
                      .+++..+..+...                                                   .+|+.|++++|.+.+.
T Consensus       190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence            7776555443221                                                   1577788888888877


Q ss_pred             CchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCCh-hccC
Q 036717          192 IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPN-TFFR  269 (580)
Q Consensus       192 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~~  269 (580)
                      .+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+.+.++. .+..
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            7777888888888888888887 667778888888888888888887766544 788888888888888755544 4778


Q ss_pred             CCCccEEeCCCCcCcccC--chhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChh-hhhhcccc
Q 036717          270 GSALETLDLRDNNFSGRI--PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPAC-ITNSLFWK  346 (580)
Q Consensus       270 ~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~~~  346 (580)
                      +++|++|++++|.+++..  +..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|.. +...    
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l----  424 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL----  424 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC----
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc----
Confidence            888888888888887655  667788888888888888888777888888888888888888887665543 3332    


Q ss_pred             cCCCCccccccCCCCCCCccchhh--cccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCccee
Q 036717          347 VGNESLYQLDEEGADVGNVDIRDY--YNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG  424 (580)
Q Consensus       347 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  424 (580)
                         ..++.+++.++.+....+..+  ...++.+.++.+.+......         ....+  ..+++|+.|++++|++++
T Consensus       425 ---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~--~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          425 ---HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---------KTNSL--QTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             ---TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---------SSCGG--GGCTTCCEEECTTSCCCE
T ss_pred             ---ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc---------cchhh--ccCCCccEEECCCCccCc
Confidence               345556666555544322211  22223333332221110000         00001  125677777777777777


Q ss_pred             eCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          425 NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       425 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      ..|..|+.+++|++|+|++|++++..|..+.+++.| .|+|++|++++.+|..+..+++|++|++++|+++|.|+.
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            777777777777777777777777777777777777 777777777776676677777777777777777776653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.9e-50  Score=441.62  Aligned_cols=490  Identities=20%  Similarity=0.198  Sum_probs=278.9

Q ss_pred             ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717            2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ   79 (580)
Q Consensus         2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~   79 (580)
                      .|.++++|++|++++|.+++..| ..+.++++|++|+|++|.++.++.  ...+++|++|++++|.+. .++...+..++
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  121 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQK  121 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCT
T ss_pred             HHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccC
Confidence            35677777777777777774333 445577778888887777776543  236777888888888777 45444445677


Q ss_pred             CCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHH-HhCCCCCcEEEcccccCCCcCCccccCC-------
Q 036717           80 KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSL-VTNCFSLIWLDLSNNNFDGQIFPNYMNL-------  151 (580)
Q Consensus        80 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------  151 (580)
                      +|++|++++|.+++..|..++++++|++|++++|.+++..+..+ ...+++|++|++++|.+++..+..+..+       
T Consensus       122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF  201 (680)
T ss_dssp             TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred             CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhh
Confidence            88888888887777777777777888888888777774333322 1245677777777777766555544332       


Q ss_pred             --------------------CCCCEEeccCccccccccccccCCCC--CCEEEcccCCCCCCCchhhhcCCCCCEEEccc
Q 036717          152 --------------------TQLQLLYLDNNHFSGKIKDGLLRSTE--LMVLDISNNRLSGHIPSWMGNFSYLQILSMSK  209 (580)
Q Consensus       152 --------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  209 (580)
                                          ++|++|++++|.+++..+..+..++.  |++|++++|.+.+..|..|+.+++|++|++++
T Consensus       202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY  281 (680)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence                                34455555555555555555555433  66777777666665566666666677777776


Q ss_pred             CcCCCcCchhccCCCCCcEEEccCCcCcc---------ccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCC-------
Q 036717          210 NLLEGNIPVQFNDLLDLEILNISENNLSG---------SMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSA-------  272 (580)
Q Consensus       210 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~-------  272 (580)
                      |.+.+..+..|..+++|+.|++++|...+         .....+ .+++|++|++++|.+++..+..|..+++       
T Consensus       282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  361 (680)
T 1ziw_A          282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS  361 (680)
T ss_dssp             CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred             CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence            66665555555555555555555443221         000111 4455555555555555544444444444       


Q ss_pred             ---------------------ccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCCe
Q 036717          273 ---------------------LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHNR  330 (580)
Q Consensus       273 ---------------------L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  330 (580)
                                           |+.|++++|++++..|.++..+++|+.|++++|.+++.++ ..+..+++|+.|++++|+
T Consensus       362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~  441 (680)
T 1ziw_A          362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK  441 (680)
T ss_dssp             TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred             CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence                                 4444555556666667778888888888888888876555 678888888888888888


Q ss_pred             ecCccChhhhhhcccccCCCCccccccCCCCCCCccc----hhhcccccccccccchhhhhc-------cccEEEEeecc
Q 036717          331 LYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDI----RDYYNSTVQLRLDESDLRWLV-------KQVEVNFMTKN  399 (580)
Q Consensus       331 l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  399 (580)
                      +++..+..+...+       .++.+++.++.+.....    ......++.+.++.+.+..+.       ..++...+..+
T Consensus       442 l~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          442 YLQLTRNSFALVP-------SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             EEECCTTTTTTCT-------TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cceeChhhhhcCc-------ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC
Confidence            8766665555432       33444444433321110    011112222222222211110       11122222222


Q ss_pred             ccceec-----------ccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCC
Q 036717          400 RYESYK-----------GVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN  468 (580)
Q Consensus       400 ~~~~~~-----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  468 (580)
                      .+..+.           -..+++|+.|++++|+++...+..|+++++|++|+|++|++++..+..|.++++|+.|+|++|
T Consensus       515 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence            222110           011445555555555555333334555555555555555555444444555555555555555


Q ss_pred             cccccCchhhc-CCCCCCEEeccCCcccccCCC
Q 036717          469 KLNGQIPPQLT-ELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       469 ~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      ++++..|..+. .+++|++|++++|++.|.|+.
T Consensus       595 ~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          595 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            55555554444 455555555555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.2e-50  Score=433.10  Aligned_cols=445  Identities=20%  Similarity=0.192  Sum_probs=347.9

Q ss_pred             ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717            2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ   79 (580)
Q Consensus         2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~   79 (580)
                      .|.++++|++|++++|++++..| ..+.++++|++|+|++|.+++...  ...+++|++|++++|.+++ ++...+..++
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~  129 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQK  129 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCT
T ss_pred             HhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCC
Confidence            47889999999999999985444 445689999999999999887532  2478899999999999984 4333345789


Q ss_pred             CCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc--EEEcccccCCCcCCccccCC------
Q 036717           80 KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI--WLDLSNNNFDGQIFPNYMNL------  151 (580)
Q Consensus        80 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~l------  151 (580)
                      +|++|++++|++++..+..+..+++|++|++++|.++ .++...+..+++|+  .|++++|.+.+..+..+...      
T Consensus       130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~  208 (606)
T 3t6q_A          130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN  208 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             cccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence            9999999999998754445556999999999999998 55555568889888  88999998887665544321      


Q ss_pred             ---------------------------------------------CCCCEEeccCccccccccccccCCCCCCEEEcccC
Q 036717          152 ---------------------------------------------TQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNN  186 (580)
Q Consensus       152 ---------------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  186 (580)
                                                                   .+|++|++++|.+++..+..+..+++|++|++++|
T Consensus       209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  288 (606)
T 3t6q_A          209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT  288 (606)
T ss_dssp             CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred             cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence                                                         16777888888888777777888889999999998


Q ss_pred             CCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCc-c-CCCCCcEEEeeCCcCcccC-
Q 036717          187 RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST-L-NLSSVEHLYLQNNALGGSI-  263 (580)
Q Consensus       187 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~-  263 (580)
                      .++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. + .+++|++|++++|.+++.. 
T Consensus       289 ~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  367 (606)
T 3t6q_A          289 HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC  367 (606)
T ss_dssp             CCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred             ccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence            888 66777888888999999999888777788888888999999988887544332 3 7888899999988888665 


Q ss_pred             -ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc-cccCCCCCCEEEeeCCeecCccChhhhh
Q 036717          264 -PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH-QLCRLRKLGIMDLSHNRLYGSIPACITN  341 (580)
Q Consensus       264 -~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~  341 (580)
                       +..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+++..|..+..
T Consensus       368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  447 (606)
T 3t6q_A          368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG  447 (606)
T ss_dssp             STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred             cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence             66788888899999999888888888888888899999988888876554 4788888899999988888777776655


Q ss_pred             hcccccCCCCccccccCCCCCCCccc-----hhhcccccccccccchhhhhccccEEEEeeccccceecc---ccccccc
Q 036717          342 SLFWKVGNESLYQLDEEGADVGNVDI-----RDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKG---VILEHMA  413 (580)
Q Consensus       342 ~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~  413 (580)
                      .       ..++.+++.++.+.....     ......++.+.                 ++.+.+.....   ..+++|+
T Consensus       448 l-------~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~-----------------Ls~n~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          448 L-------PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV-----------------LSFCDLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             C-------TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE-----------------CTTSCCCEECTTTTTTCTTCC
T ss_pred             C-------CCCCEEECCCCCCCccccccchhhccCCCccEEE-----------------CCCCccCccChhhhccccCCC
Confidence            3       356666666666543211     11222233333                 33333333321   2378999


Q ss_pred             EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717          414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  475 (580)
Q Consensus       414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  475 (580)
                      .|++++|++++..|..+..++.| +|++++|.+++.+|..+..+++|+.|++++|.+.+..+
T Consensus       504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999999 99999999999999999999999999999999987654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-49  Score=434.33  Aligned_cols=465  Identities=21%  Similarity=0.233  Sum_probs=308.7

Q ss_pred             ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717            2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ   79 (580)
Q Consensus         2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~   79 (580)
                      .|.++++|++|++++|.++ .+|...+.++++|++|+|++|.++++..  ...+++|++|++++|.+++..|..+ ..++
T Consensus        68 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~  145 (680)
T 1ziw_A           68 LCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLE  145 (680)
T ss_dssp             HHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCT
T ss_pred             HHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccc
Confidence            3567888888888888887 6776666688888888888888877642  2367788888888888775444444 4677


Q ss_pred             CCcEEEcccCcCccccchhhh--cCCCCCEEEcccCcCccccchH-----------------------------------
Q 036717           80 KLVYMNISKNSFEGNIPSSIA--KMQGLRFLDVSTNNFAGELSQS-----------------------------------  122 (580)
Q Consensus        80 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~-----------------------------------  122 (580)
                      +|++|++++|.+++..+..++  .+++|++|++++|.+++..+..                                   
T Consensus       146 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~  225 (680)
T 1ziw_A          146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR  225 (680)
T ss_dssp             TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred             cCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence            788888888877766665554  3467777777777666332221                                   


Q ss_pred             ---------------HHhCCC--CCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEccc
Q 036717          123 ---------------LVTNCF--SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN  185 (580)
Q Consensus       123 ---------------~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  185 (580)
                                     .+..++  +|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             EEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence                           112222  255555555555554455555555555555555555555555555555555555555


Q ss_pred             CCCCC-----CCc----hhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcc--ccCCcc---CCCCCcE
Q 036717          186 NRLSG-----HIP----SWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG--SMISTL---NLSSVEH  251 (580)
Q Consensus       186 n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~---~~~~L~~  251 (580)
                      |...+     .+|    ..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+..  .....+   ..++|+.
T Consensus       306 ~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~  385 (680)
T 1ziw_A          306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI  385 (680)
T ss_dssp             CBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred             hhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence            43322     112    145666777777777777777667777777777777777765432  222222   2356777


Q ss_pred             EEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCc-hhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCe
Q 036717          252 LYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIP-HQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR  330 (580)
Q Consensus       252 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  330 (580)
                      |++++|.+++..|..+..+++|+.|++++|++++.+| ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus       386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  465 (680)
T 1ziw_A          386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA  465 (680)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence            7777777777777778888888888888888876555 567777888888888887776666667777777777777776


Q ss_pred             ec--CccChhhhhhcccccCCCCccccccCCCCCCCccch--hhcccccccccccchhhhh---------------cccc
Q 036717          331 LY--GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIR--DYYNSTVQLRLDESDLRWL---------------VKQV  391 (580)
Q Consensus       331 l~--~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~  391 (580)
                      +.  +.+|..+...       .+++.+++.++.+......  .....++.+.++.+.+..+               ...+
T Consensus       466 l~~~~~~p~~~~~l-------~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L  538 (680)
T 1ziw_A          466 LKNVDSSPSPFQPL-------RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL  538 (680)
T ss_dssp             CBCTTCSSCTTTTC-------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred             ccccccCCcccccC-------CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence            65  3455544433       2444555555554443332  1223344444444443322               1334


Q ss_pred             EEEEeeccccceecc---cccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccccccc-CcccCCEEECCC
Q 036717          392 EVNFMTKNRYESYKG---VILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFS-NLKMIESLDLSH  467 (580)
Q Consensus       392 ~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~  467 (580)
                      +...+..+.+..++.   ..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.|++++
T Consensus       539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence            556667777666654   2378999999999999988888899999999999999999998888887 789999999999


Q ss_pred             CcccccCc
Q 036717          468 NKLNGQIP  475 (580)
Q Consensus       468 N~l~~~~p  475 (580)
                      |.+....+
T Consensus       619 N~~~c~c~  626 (680)
T 1ziw_A          619 NPFDCTCE  626 (680)
T ss_dssp             CCCCBCCC
T ss_pred             CCcccCCc
Confidence            99987544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-49  Score=426.72  Aligned_cols=434  Identities=20%  Similarity=0.173  Sum_probs=295.0

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM   84 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L   84 (580)
                      +++++|++++|+++ .++...+.++++|++|+|++|.++++...  ..+++|++|++++|.+++..|..+ .++++|++|
T Consensus        32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCEE
T ss_pred             CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccCCEE
Confidence            57888888888888 45554566888888888888888876322  467888888888888885445554 478888888


Q ss_pred             EcccCcCccccchhhhcCCCCCEEEcccCcCcc-ccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCC----EEec
Q 036717           85 NISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG-ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQ----LLYL  159 (580)
Q Consensus        85 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l  159 (580)
                      ++++|.+++..+..++++++|++|++++|.+.+ .+|.. +.++++|++|++++|.+++..+..+..+++|+    +|++
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l  188 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM  188 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence            888888887776788888888888888888874 45654 47888888888888888877777776665554    7888


Q ss_pred             cCccccccccccccCCCCCCEEEcccCCCC--------------------------------------------------
Q 036717          160 DNNHFSGKIKDGLLRSTELMVLDISNNRLS--------------------------------------------------  189 (580)
Q Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--------------------------------------------------  189 (580)
                      ++|.+++..+..+.. .+|+.|++++|.+.                                                  
T Consensus       189 ~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  267 (606)
T 3vq2_A          189 SLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR  267 (606)
T ss_dssp             TTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred             cCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence            888877555444433 37777777776543                                                  


Q ss_pred             --------CCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcc
Q 036717          190 --------GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGG  261 (580)
Q Consensus       190 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  261 (580)
                              +..|. +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+...+ .. .+++|++|++++|...+
T Consensus       268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~  342 (606)
T 3vq2_A          268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSI  342 (606)
T ss_dssp             ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCE
T ss_pred             ccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCcc
Confidence                    22233 566788899999998886 445 7888888999999999885444 44 88888899998886554


Q ss_pred             cCChhccCCCCccEEeCCCCcCccc--CchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccC-hh
Q 036717          262 SIPNTFFRGSALETLDLRDNNFSGR--IPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP-AC  338 (580)
Q Consensus       262 ~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~  338 (580)
                      ..  .+..+++|++|++++|++++.  .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..
T Consensus       343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence            33  566788888888888888765  37778888888888888888874 55778888888888888888887666 34


Q ss_pred             hhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEcc
Q 036717          339 ITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS  418 (580)
Q Consensus       339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  418 (580)
                      +...       ..++.+++.++.+....+..+.                                    .+++|+.|+++
T Consensus       420 ~~~l-------~~L~~L~l~~n~l~~~~~~~~~------------------------------------~l~~L~~L~l~  456 (606)
T 3vq2_A          420 FLSL-------EKLLYLDISYTNTKIDFDGIFL------------------------------------GLTSLNTLKMA  456 (606)
T ss_dssp             TTTC-------TTCCEEECTTSCCEECCTTTTT------------------------------------TCTTCCEEECT
T ss_pred             hhcc-------ccCCEEECcCCCCCccchhhhc------------------------------------CCCCCCEEECC
Confidence            4332       3455555555544332211111                                    13445555555


Q ss_pred             CCccee-eCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCccc
Q 036717          419 SNELTG-NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS  495 (580)
Q Consensus       419 ~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  495 (580)
                      +|.+++ .+|..++.+++|++|++++|.+++..|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            555544 24444455555555555555555444444555555555555555555444455555555555555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-49  Score=437.79  Aligned_cols=497  Identities=21%  Similarity=0.227  Sum_probs=368.8

Q ss_pred             ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChh-HhhcC
Q 036717            2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQN-MGIVL   78 (580)
Q Consensus         2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~-~~~~l   78 (580)
                      .|.++++|++|+|++|...+.++...+.++++|++|+|++|.+++...  ...+++|++|++++|.+++.+|.. .+..+
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            478999999999999977668877777899999999999999987632  248899999999999999766654 34689


Q ss_pred             CCCcEEEcccCcCccccc-hhhhcCCCCCEEEcccCcCccccchHHHhCC--CCCcEEEcccccCCCcCCccccCCCC--
Q 036717           79 QKLVYMNISKNSFEGNIP-SSIAKMQGLRFLDVSTNNFAGELSQSLVTNC--FSLIWLDLSNNNFDGQIFPNYMNLTQ--  153 (580)
Q Consensus        79 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~--  153 (580)
                      ++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+ ..+  ++|+.|++++|.+.+..+..+..+++  
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCcc
Confidence            999999999999987654 689999999999999999986555543 555  89999999999999888877776665  


Q ss_pred             ----CCEEeccCccccccccccccC--------------------------------------CCCCCEEEcccCCCCCC
Q 036717          154 ----LQLLYLDNNHFSGKIKDGLLR--------------------------------------STELMVLDISNNRLSGH  191 (580)
Q Consensus       154 ----L~~L~l~~n~l~~~~~~~l~~--------------------------------------l~~L~~L~L~~n~l~~~  191 (580)
                          |++|++++|.+++..+..+..                                      .++|+.|++++|.+.+.
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~  281 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL  281 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence                999999999877554443321                                      25788888888888877


Q ss_pred             CchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCC
Q 036717          192 IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG  270 (580)
Q Consensus       192 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~  270 (580)
                      .+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.+.+..+..|..+
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            77788888888888888888887778888888888888888888887766555 78888888888888887777778888


Q ss_pred             CCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccCh-hhhhhcccccCC
Q 036717          271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA-CITNSLFWKVGN  349 (580)
Q Consensus       271 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~~~~~~  349 (580)
                      ++|+.|++++|.+++. +    .+++|+.|++++|+++ .+|..   ...++.+++++|++++.... .+.       ..
T Consensus       362 ~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~-------~l  425 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLL-------RV  425 (844)
T ss_dssp             CCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHT-------TC
T ss_pred             CCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhh-------cC
Confidence            8888888888888732 2    2667777777777776 33332   34556666666666532111 111       11


Q ss_pred             CCccccccCCCCCCCccch---hhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeC
Q 036717          350 ESLYQLDEEGADVGNVDIR---DYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNI  426 (580)
Q Consensus       350 ~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  426 (580)
                      ..++.+++.++.+......   .....++.+.++.+.+......       ......+.  .+++|+.|+|++|++++..
T Consensus       426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~-------~~~~~~~~--~l~~L~~L~Ls~N~l~~~~  496 (844)
T 3j0a_A          426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET-------ELCWDVFE--GLSHLQVLYLNHNYLNSLP  496 (844)
T ss_dssp             TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS-------CCCSSCSS--CBCCEECCCCCHHHHTTCC
T ss_pred             CccceeeCCCCcccccccccccccCCccccccCCCCcccccccc-------ccchhhhc--CcccccEEECCCCcccccC
Confidence            3444445555444432211   1112222333332221110000       00001111  2789999999999999999


Q ss_pred             CcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCC
Q 036717          427 PSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFST  506 (580)
Q Consensus       427 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  506 (580)
                      |..|.++++|+.|+|++|++++..|..+.  ++|+.|+|++|++++.+|+.+   ++|+.|++++|++.|.|+.. +|..
T Consensus       497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~-~f~~  570 (844)
T 3j0a_A          497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS-TFIN  570 (844)
T ss_dssp             TTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC-SHHH
T ss_pred             hhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH-HHHH
Confidence            99999999999999999999988777776  899999999999999999775   47899999999999999743 2222


Q ss_pred             cCccccCCCCCCCCCCCCCCCCCCCCC
Q 036717          507 FDESSYRGNLHLCGPPINKSCTNLPKL  533 (580)
Q Consensus       507 ~~~~~~~~n~~lc~~~~~~~C~~~~~~  533 (580)
                      |   ...++..+||.+....|..++..
T Consensus       571 ~---~~~~~~~~~~~~~~~~C~~p~~~  594 (844)
T 3j0a_A          571 W---LNHTNVTIAGPPADIYCVYPDSF  594 (844)
T ss_dssp             H---HHHTTTTTCCCGGGCCCSSCSSS
T ss_pred             H---HHhcCcccccccccCccCCchhh
Confidence            2   23466778888888889875543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-48  Score=420.20  Aligned_cols=445  Identities=20%  Similarity=0.187  Sum_probs=364.0

Q ss_pred             ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717            2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ   79 (580)
Q Consensus         2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~   79 (580)
                      .|.++++|++|++++|.++ .++...+.++++|++|+|++|.+++...  ...+++|++|++++|.++ .++...+..++
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  128 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLI  128 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCT
T ss_pred             hccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCC
Confidence            5789999999999999999 5555556799999999999999998632  247899999999999998 45533356899


Q ss_pred             CCcEEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCC----cEEEcccccCCCcCCccccCCCCC
Q 036717           80 KLVYMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL----IWLDLSNNNFDGQIFPNYMNLTQL  154 (580)
Q Consensus        80 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L  154 (580)
                      +|++|++++|.+++ .+|..++++++|++|++++|.+++ ++...+..+++|    ++|++++|.+++..+..+... +|
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L  206 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL  206 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred             CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCcccccCc-ee
Confidence            99999999999986 569999999999999999999985 443334555554    489999999986655555444 88


Q ss_pred             CEEeccCcccc----------------------------------------------------------ccccccccCCC
Q 036717          155 QLLYLDNNHFS----------------------------------------------------------GKIKDGLLRST  176 (580)
Q Consensus       155 ~~L~l~~n~l~----------------------------------------------------------~~~~~~l~~l~  176 (580)
                      ++|++++|.++                                                          +..|. +..++
T Consensus       207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~  285 (606)
T 3vq2_A          207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLA  285 (606)
T ss_dssp             EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGT
T ss_pred             eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCC
Confidence            88888887653                                                          12232 56678


Q ss_pred             CCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeC
Q 036717          177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQN  256 (580)
Q Consensus       177 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  256 (580)
                      +|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. ....+++|++|++++
T Consensus       286 ~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~  359 (606)
T 3vq2_A          286 NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSR  359 (606)
T ss_dssp             TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCS
T ss_pred             CCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcC
Confidence            9999999999997 455 788899999999999999 4777 45 8999999999999655544 334889999999999


Q ss_pred             CcCccc--CChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCCeecC
Q 036717          257 NALGGS--IPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHNRLYG  333 (580)
Q Consensus       257 n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~  333 (580)
                      |.+++.  .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+++
T Consensus       360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             SCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred             CccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence            999866  37888999999999999999884 56788899999999999999998877 688899999999999999998


Q ss_pred             ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc
Q 036717          334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA  413 (580)
Q Consensus       334 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  413 (580)
                      ..|..+...       .+++.+++.++.+.......                                 .+  ..+++|+
T Consensus       439 ~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~~---------------------------------~~--~~l~~L~  476 (606)
T 3vq2_A          439 DFDGIFLGL-------TSLNTLKMAGNSFKDNTLSN---------------------------------VF--ANTTNLT  476 (606)
T ss_dssp             CCTTTTTTC-------TTCCEEECTTCEEGGGEECS---------------------------------CC--TTCTTCC
T ss_pred             cchhhhcCC-------CCCCEEECCCCcCCCcchHH---------------------------------hh--ccCCCCC
Confidence            888776654       24555555544432200000                                 00  1278999


Q ss_pred             EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCC-CCCEEeccCC
Q 036717          414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSKFDVSYN  492 (580)
Q Consensus       414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N  492 (580)
                      .|++++|++++..|..|+.+++|++|++++|++++.+|..|+++++|++|+|++|+++ .+|..+..++ +|++|++++|
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence            9999999999999999999999999999999999999999999999999999999999 6777799997 6999999999


Q ss_pred             cccccCCCC
Q 036717          493 NLSGPIPDK  501 (580)
Q Consensus       493 ~l~~~~p~~  501 (580)
                      ++.|.|+..
T Consensus       556 ~~~c~c~~~  564 (606)
T 3vq2_A          556 SVACICEHQ  564 (606)
T ss_dssp             CCCCSSTTH
T ss_pred             CcccCCccH
Confidence            999999863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-48  Score=413.93  Aligned_cols=444  Identities=20%  Similarity=0.199  Sum_probs=348.0

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM   84 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L   84 (580)
                      ++++.|++++|.++ .++...+.++++|++|+|++|.++++..  ...+++|++|++++|.++ .++...+..+++|++|
T Consensus        28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence            46889999999998 5555556689999999999998887633  246789999999999988 4554455688999999


Q ss_pred             EcccCcCccccchhhhcCCCCCEEEcccCcCcc-ccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCC----CEEec
Q 036717           85 NISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG-ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL----QLLYL  159 (580)
Q Consensus        85 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~l  159 (580)
                      ++++|++++..+..++++++|++|++++|.+++ .+|.. ++++++|++|++++|.+++..+..+..+++|    ++|++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence            999999886655578899999999999998874 35655 4788999999999999987777778777777    78999


Q ss_pred             cCccccccccccccCCCCCCEEEcccC-----------------------------------------------------
Q 036717          160 DNNHFSGKIKDGLLRSTELMVLDISNN-----------------------------------------------------  186 (580)
Q Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~L~~n-----------------------------------------------------  186 (580)
                      ++|.+++..+..+... +|+.|++++|                                                     
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            9998887777666554 6788877776                                                     


Q ss_pred             -----CCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcc
Q 036717          187 -----RLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGG  261 (580)
Q Consensus       187 -----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  261 (580)
                           .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+...+.  ..+++|++|++++|.+.+
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccc
Confidence                 223344566777888999999998887 577777777 89999999998885444  367889999999998876


Q ss_pred             cCChhccCCCCccEEeCCCCcCcccC--chhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccCh-h
Q 036717          262 SIPNTFFRGSALETLDLRDNNFSGRI--PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA-C  338 (580)
Q Consensus       262 ~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~  338 (580)
                      ..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|.+++..+. +..+++|+.|++++|.+.+..|. .
T Consensus       340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~  416 (570)
T 2z63_A          340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV  416 (570)
T ss_dssp             BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred             cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence            5554  67789999999999888554  67788899999999999998865444 88899999999999998866552 3


Q ss_pred             hhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEcc
Q 036717          339 ITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS  418 (580)
Q Consensus       339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  418 (580)
                      +...       ..++.+++.++.+.......                                  +  ..+++|+.|+++
T Consensus       417 ~~~l-------~~L~~L~l~~n~l~~~~~~~----------------------------------~--~~l~~L~~L~l~  453 (570)
T 2z63_A          417 FLSL-------RNLIYLDISHTHTRVAFNGI----------------------------------F--NGLSSLEVLKMA  453 (570)
T ss_dssp             TTTC-------TTCCEEECTTSCCEECCTTT----------------------------------T--TTCTTCCEEECT
T ss_pred             hhcC-------CCCCEEeCcCCcccccchhh----------------------------------h--hcCCcCcEEECc
Confidence            3322       23444444443332211100                                  0  127889999999


Q ss_pred             CCcce-eeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCccccc
Q 036717          419 SNELT-GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGP  497 (580)
Q Consensus       419 ~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  497 (580)
                      +|.++ +.+|..+..+++|++|++++|++++..|..|+++++|++|++++|++++..|..+..+++|++|++++|+++|.
T Consensus       454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            99997 57888999999999999999999988899999999999999999999988888899999999999999999999


Q ss_pred             CCCCccc
Q 036717          498 IPDKEQF  504 (580)
Q Consensus       498 ~p~~~~~  504 (580)
                      ||....+
T Consensus       534 ~~~~~~~  540 (570)
T 2z63_A          534 CPRIDYL  540 (570)
T ss_dssp             TTTTHHH
T ss_pred             CcchHHH
Confidence            9876443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-48  Score=415.29  Aligned_cols=422  Identities=21%  Similarity=0.230  Sum_probs=342.2

Q ss_pred             ccccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717            2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQ   79 (580)
Q Consensus         2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~   79 (580)
                      .|.++++|++|++++|+++ .++...+.++++|++|+|++|.+++...  ...+++|++|++++|.++ .++...+..++
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~  124 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK  124 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCT
T ss_pred             HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccc
Confidence            4788999999999999998 5666667799999999999999987642  347899999999999998 56654456899


Q ss_pred             CCcEEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCC----cEEEcccccCCCcCCccccCCCCC
Q 036717           80 KLVYMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL----IWLDLSNNNFDGQIFPNYMNLTQL  154 (580)
Q Consensus        80 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L  154 (580)
                      +|++|++++|.+++ .+|..|+++++|++|++++|.++ .++...++.+++|    +.|++++|.+.+..+..+... +|
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L  202 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL  202 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred             cccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cc
Confidence            99999999999987 46999999999999999999998 4544445777777    899999999988777776655 78


Q ss_pred             CEEeccCc----------------------------------------------------------cccccccccccCCC
Q 036717          155 QLLYLDNN----------------------------------------------------------HFSGKIKDGLLRST  176 (580)
Q Consensus       155 ~~L~l~~n----------------------------------------------------------~l~~~~~~~l~~l~  176 (580)
                      ++|++++|                                                          .+.+..+..+..++
T Consensus       203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~  282 (570)
T 2z63_A          203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT  282 (570)
T ss_dssp             EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred             eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence            88887776                                                          22334456677789


Q ss_pred             CCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeC
Q 036717          177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQN  256 (580)
Q Consensus       177 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  256 (580)
                      +|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. ..+++|++|++++
T Consensus       283 ~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~  356 (570)
T 2z63_A          283 NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSR  356 (570)
T ss_dssp             TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCS
T ss_pred             cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcC
Confidence            9999999999988 577778888 9999999999987 4444  4678899999999988766554 5788999999999


Q ss_pred             CcCcccC--ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCCeecC
Q 036717          257 NALGGSI--PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHNRLYG  333 (580)
Q Consensus       257 n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~  333 (580)
                      |.+++..  +..+..+++|++|++++|.+++..+. +..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+
T Consensus       357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            9988654  67788899999999999998865444 8889999999999999887665 567889999999999999987


Q ss_pred             ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc
Q 036717          334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA  413 (580)
Q Consensus       334 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  413 (580)
                      ..|..+...       ..++.+++.++.+......                                 ..+  ..+++|+
T Consensus       436 ~~~~~~~~l-------~~L~~L~l~~n~l~~~~~p---------------------------------~~~--~~l~~L~  473 (570)
T 2z63_A          436 AFNGIFNGL-------SSLEVLKMAGNSFQENFLP---------------------------------DIF--TELRNLT  473 (570)
T ss_dssp             CCTTTTTTC-------TTCCEEECTTCEEGGGEEC---------------------------------SCC--TTCTTCC
T ss_pred             cchhhhhcC-------CcCcEEECcCCcCccccch---------------------------------hhh--hcccCCC
Confidence            777766553       2444444444432210000                                 001  1278999


Q ss_pred             EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCch
Q 036717          414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP  476 (580)
Q Consensus       414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  476 (580)
                      .|++++|++++..|..|..+++|++|++++|++++.+|..|.++++|+.|++++|.+++..|.
T Consensus       474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999999999999999999999999999998889999999999999999999987664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.5e-49  Score=426.70  Aligned_cols=442  Identities=20%  Similarity=0.256  Sum_probs=299.5

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCC-----------CC-CCCCCccEEEccCCCCCccCChhH
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQ-----------LT-GAQHGLLSLDISKNSFTGELPQNM   74 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~-~~~~~L~~L~L~~n~l~~~~~~~~   74 (580)
                      .+++.|+|+++.++|.+|..+ .++++|++|+|++|.+....           ++ ..+..|+ +++++|.+.+.+|..+
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~  158 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF  158 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred             CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence            478999999999999999775 59999999999999762111           01 0123455 6666666665555443


Q ss_pred             hhcCC------------------CCcEEEcc--cCcCccccchhhhcCCCCCEEEcccCcCccc----------------
Q 036717           75 GIVLQ------------------KLVYMNIS--KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGE----------------  118 (580)
Q Consensus        75 ~~~l~------------------~L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------  118 (580)
                      ...+.                  .++.+.+.  +|++++ +|.+++++++|++|++++|.+++.                
T Consensus       159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence            31111                  12222222  467776 777888888888888888888764                


Q ss_pred             -cchHHHh--CCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcc-ccc-cccccccCC------CCCCEEEcccCC
Q 036717          119 -LSQSLVT--NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH-FSG-KIKDGLLRS------TELMVLDISNNR  187 (580)
Q Consensus       119 -~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~  187 (580)
                       +|..+ .  ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+      ++|++|++++|.
T Consensus       238 ~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          238 YKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             cCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence             66654 5  77888888888888887788888888888888888887 776 677766665      788888888888


Q ss_pred             CCCCCch--hhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCC-CcEEEeeCCcCcccCC
Q 036717          188 LSGHIPS--WMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIP  264 (580)
Q Consensus       188 l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~  264 (580)
                      ++ .+|.  .++.+++|++|++++|.+.+.+| .|..+++|++|++++|.++..+.....+++ |++|++++|.++ .+|
T Consensus       317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp  393 (636)
T 4eco_A          317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP  393 (636)
T ss_dssp             CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred             CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc
Confidence            87 6676  78888888888888888877777 777788888888888888755544447777 888888888887 667


Q ss_pred             hhccCCC--CccEEeCCCCcCcccCchhhc-------cCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCcc
Q 036717          265 NTFFRGS--ALETLDLRDNNFSGRIPHQIN-------EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSI  335 (580)
Q Consensus       265 ~~~~~~~--~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  335 (580)
                      ..+....  +|+.|++++|++++..|..+.       .+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+
T Consensus       394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i  472 (636)
T 4eco_A          394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI  472 (636)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred             hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence            6666544  788888888888877777776       6678888888888887544444556788888888888886 55


Q ss_pred             ChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEE
Q 036717          336 PACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGL  415 (580)
Q Consensus       336 p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  415 (580)
                      |..........                                                           ...+++|+.|
T Consensus       473 ~~~~~~~~~~~-----------------------------------------------------------~~~l~~L~~L  493 (636)
T 4eco_A          473 PKNSLKDENEN-----------------------------------------------------------FKNTYLLTSI  493 (636)
T ss_dssp             CSSSSEETTEE-----------------------------------------------------------CTTGGGCCEE
T ss_pred             CHHHhcccccc-----------------------------------------------------------ccccCCccEE
Confidence            54322110000                                                           0003356666


Q ss_pred             EccCCcceeeCCcccc--cccCCCeEecccCcceecccccccCcccCCEEEC------CCCcccccCchhhcCCCCCCEE
Q 036717          416 DLSSNELTGNIPSEIG--DLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDL------SHNKLNGQIPPQLTELHSLSKF  487 (580)
Q Consensus       416 ~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L  487 (580)
                      ++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+.++++|++|+|      ++|++.+.+|..+..+++|++|
T Consensus       494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L  571 (636)
T 4eco_A          494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL  571 (636)
T ss_dssp             ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence            66666666 4555554  66666666666666664 5666666666666666      3455566666666666666666


Q ss_pred             eccCCcccccCCCCcccCCcCccccCCCCCCC
Q 036717          488 DVSYNNLSGPIPDKEQFSTFDESSYRGNLHLC  519 (580)
Q Consensus       488 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc  519 (580)
                      +|++|++ +.+|... +..+...++.+|+..|
T Consensus       572 ~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          572 QIGSNDI-RKVNEKI-TPNISVLDIKDNPNIS  601 (636)
T ss_dssp             ECCSSCC-CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred             ECCCCcC-CccCHhH-hCcCCEEECcCCCCcc
Confidence            6666666 4555432 2444555555555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.4e-46  Score=400.79  Aligned_cols=445  Identities=20%  Similarity=0.203  Sum_probs=286.3

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM   84 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L   84 (580)
                      ++|++|++++|++++..|. .+.++++|++|+|++|.+++...  ...+++|++|++++|.++ .++...+..+++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEE
Confidence            4677778887777743333 34577777888887777776532  236677777888777777 4444444567777788


Q ss_pred             EcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcc
Q 036717           85 NISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH  163 (580)
Q Consensus        85 ~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (580)
                      ++++|.+++ ..|..++++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+..+..+++|++|+++.|.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            887777775 2456677777778888777775446665556777777777777777777777777777777777777777


Q ss_pred             ccccccccccCCCCCCEEEcccCCCCCCC--c-hhhhcCCCCCEEEcccCcCCCcCc----hhccCCCCCcEEEccCCcC
Q 036717          164 FSGKIKDGLLRSTELMVLDISNNRLSGHI--P-SWMGNFSYLQILSMSKNLLEGNIP----VQFNDLLDLEILNISENNL  236 (580)
Q Consensus       164 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l  236 (580)
                      +.......+..+++|++|++++|.+.+..  + .....+++|+.|++++|.+.+..+    ..+..+++|+.+++++|.+
T Consensus       184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            65332222345677777777777776531  1 112335566666666665543222    2233455566666666555


Q ss_pred             ccccCC-------ccCC-----------------------------CCCcEEEeeCCcCcccCChhc-cCCCCccEEeCC
Q 036717          237 SGSMIS-------TLNL-----------------------------SSVEHLYLQNNALGGSIPNTF-FRGSALETLDLR  279 (580)
Q Consensus       237 ~~~~~~-------~~~~-----------------------------~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~  279 (580)
                      .+....       ...+                             ++|++|++++|.+. .+|..+ ..+++|++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred             cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence            442110       0022                             34555556555554 344433 345666666666


Q ss_pred             CCcCcccCch---hhccCcCcceeecccccccccCc--ccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccc
Q 036717          280 DNNFSGRIPH---QINEHSNLRALLLRANYLQGPIP--HQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQ  354 (580)
Q Consensus       280 ~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~  354 (580)
                      +|++++.+|.   .++.+++|+.|++++|.+++..+  ..+..+++|+.|++++|+++ .+|..+...       ..++.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~-------~~L~~  414 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP-------EKMRF  414 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC-------TTCCE
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc-------ccccE
Confidence            6666554432   24555666666666666654322  33555666666666666665 344332221       12222


Q ss_pred             cccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccccc
Q 036717          355 LDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQ  434 (580)
Q Consensus       355 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  434 (580)
                                                             ..++.+++..+++...++|+.|++++|++++.+    ..++
T Consensus       415 ---------------------------------------L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~  451 (549)
T 2z81_A          415 ---------------------------------------LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLP  451 (549)
T ss_dssp             ---------------------------------------EECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCT
T ss_pred             ---------------------------------------EECCCCCcccccchhcCCceEEECCCCChhhhc----ccCC
Confidence                                                   233334444444444678999999999998643    5789


Q ss_pred             CCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCc
Q 036717          435 NIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTF  507 (580)
Q Consensus       435 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  507 (580)
                      +|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.||...++..|
T Consensus       452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~  522 (549)
T 2z81_A          452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  522 (549)
T ss_dssp             TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred             hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence            9999999999999 5676 467899999999999999999999999999999999999999999854444333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.3e-48  Score=416.40  Aligned_cols=415  Identities=20%  Similarity=0.259  Sum_probs=343.8

Q ss_pred             ccccCCCCCEEECCCCCC------cc------cCchHHhhCCCCCcEEEccCCcccCCCCCCC-----------------
Q 036717            2 FLRHQFNLKYLDLSHNKL------AG------NFPTWLLENNTKLEVLYLINNSFSGFQLTGA-----------------   52 (580)
Q Consensus         2 ~l~~~~~L~~L~Ls~n~i------~~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------   52 (580)
                      .|.++++|++|+|++|.+      .|      .+|...   +..|+ +++++|.+.+. .+..                 
T Consensus       100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~-~~~~~~~~~~~l~~~~l~~~~  174 (636)
T 4eco_A          100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYD-PREDFSDLIKDCINSDPQQKS  174 (636)
T ss_dssp             GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCC-GGGGSCHHHHHHHHHCTTSCC
T ss_pred             HHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccC-chhhHHHHHHHHhhcCccccc
Confidence            478999999999999976      33      445443   34455 66666655543 1111                 


Q ss_pred             -----CCCccEEEcc--CCCCCccCChhHhhcCCCCcEEEcccCcCccc-----------------cchhhh--cCCCCC
Q 036717           53 -----QHGLLSLDIS--KNSFTGELPQNMGIVLQKLVYMNISKNSFEGN-----------------IPSSIA--KMQGLR  106 (580)
Q Consensus        53 -----~~~L~~L~L~--~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~  106 (580)
                           ...++.+.+.  +|+++| +|..++ ++++|++|++++|.+++.                 +|..++  ++++|+
T Consensus       175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~  252 (636)
T 4eco_A          175 IKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT  252 (636)
T ss_dssp             CCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred             cccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCC
Confidence                 1122222222  578887 898875 799999999999999985                 899988  999999


Q ss_pred             EEEcccCcCccccchHHHhCCCCCcEEEccccc-CCC-cCCccccCC------CCCCEEeccCccccccccc--cccCCC
Q 036717          107 FLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN-FDG-QIFPNYMNL------TQLQLLYLDNNHFSGKIKD--GLLRST  176 (580)
Q Consensus       107 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~  176 (580)
                      +|++++|.+.+.+|..+ .++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++ .+|.  .+..++
T Consensus       253 ~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~  330 (636)
T 4eco_A          253 DVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK  330 (636)
T ss_dssp             EEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT
T ss_pred             EEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC
Confidence            99999999998899764 799999999999998 887 788877776      99999999999999 7888  899999


Q ss_pred             CCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCC-CcEEEccCCcCccccCCccC--CCCCcEEE
Q 036717          177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD-LEILNISENNLSGSMISTLN--LSSVEHLY  253 (580)
Q Consensus       177 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~--~~~L~~L~  253 (580)
                      +|++|++++|.+.+.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++..+.....  +++|++|+
T Consensus       331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~  408 (636)
T 4eco_A          331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID  408 (636)
T ss_dssp             TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEE
T ss_pred             CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEE
Confidence            99999999999998888 8999999999999999998 78888999999 99999999999965543333  45899999


Q ss_pred             eeCCcCcccCChhcc-------CCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc-cccCCC------
Q 036717          254 LQNNALGGSIPNTFF-------RGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH-QLCRLR------  319 (580)
Q Consensus       254 l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~------  319 (580)
                      +++|.+++..|..+.       .+++|+.|++++|+++...+..+..+++|+.|++++|.++ .+|. .+....      
T Consensus       409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l  487 (636)
T 4eco_A          409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNT  487 (636)
T ss_dssp             CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTG
T ss_pred             CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccccc
Confidence            999999998888888       7789999999999999544455667999999999999999 4554 343332      


Q ss_pred             -CCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeec
Q 036717          320 -KLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTK  398 (580)
Q Consensus       320 -~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (580)
                       +|+.|++++|+++ .+|..+..                                                         
T Consensus       488 ~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------------------------------  509 (636)
T 4eco_A          488 YLLTSIDLRFNKLT-KLSDDFRA---------------------------------------------------------  509 (636)
T ss_dssp             GGCCEEECCSSCCC-BCCGGGST---------------------------------------------------------
T ss_pred             CCccEEECcCCcCC-ccChhhhh---------------------------------------------------------
Confidence             9999999999998 67765431                                                         


Q ss_pred             cccceecccccccccEEEccCCcceeeCCcccccccCCCeEec------ccCcceecccccccCcccCCEEECCCCcccc
Q 036717          399 NRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNL------SYNFLSGSIPESFSNLKMIESLDLSHNKLNG  472 (580)
Q Consensus       399 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  472 (580)
                              ..+++|+.|+|++|++++ +|..+..+++|++|+|      ++|++.+.+|..++++++|++|+|++|++ +
T Consensus       510 --------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~  579 (636)
T 4eco_A          510 --------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-R  579 (636)
T ss_dssp             --------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred             --------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-C
Confidence                    017899999999999997 8999999999999999      56888999999999999999999999999 5


Q ss_pred             cCchhhcCCCCCCEEeccCCcccccC
Q 036717          473 QIPPQLTELHSLSKFDVSYNNLSGPI  498 (580)
Q Consensus       473 ~~p~~l~~l~~L~~L~Ls~N~l~~~~  498 (580)
                      .+|..+.  ++|++||+++|++.+.-
T Consensus       580 ~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          580 KVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             ccCHhHh--CcCCEEECcCCCCcccc
Confidence            7888766  79999999999988643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.7e-46  Score=407.44  Aligned_cols=412  Identities=19%  Similarity=0.252  Sum_probs=343.1

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEc-cCCcccCCCCCC----------------------------------
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL-INNSFSGFQLTG----------------------------------   51 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~----------------------------------   51 (580)
                      .+++.|+|+++.++|.+|..+. ++++|++|+| ++|.+++.....                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~-~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGG-GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHh-ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            5789999999999999998764 9999999999 888766541110                                  


Q ss_pred             -------------------CCCCccEEEcc--CCCCCccCChhHhhcCCCCcEEEcccCcCcc-----------------
Q 036717           52 -------------------AQHGLLSLDIS--KNSFTGELPQNMGIVLQKLVYMNISKNSFEG-----------------   93 (580)
Q Consensus        52 -------------------~~~~L~~L~L~--~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------   93 (580)
                                         ....++.+.+.  +|.+++ +|..+. ++++|++|++++|++++                 
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence                               11223333343  377886 898765 89999999999999998                 


Q ss_pred             ccchhhh--cCCCCCEEEcccCcCccccchHHHhCCCCCcEEEccccc-CCC-cCCccccC-------CCCCCEEeccCc
Q 036717           94 NIPSSIA--KMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN-FDG-QIFPNYMN-------LTQLQLLYLDNN  162 (580)
Q Consensus        94 ~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~l~~n  162 (580)
                      .+|..++  ++++|++|+|++|.+.+.+|.. +.++++|++|++++|+ +++ .+|..+..       +++|++|++++|
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            3888877  9999999999999999899966 4899999999999998 887 67765554       459999999999


Q ss_pred             cccccccc--cccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCC-CcEEEccCCcCccc
Q 036717          163 HFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLD-LEILNISENNLSGS  239 (580)
Q Consensus       163 ~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~  239 (580)
                      .++ .+|.  .+..+++|+.|++++|.+. .+| .|+.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++..
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l  634 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI  634 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC
Confidence            999 7888  8999999999999999999 778 8999999999999999998 88888999999 99999999999965


Q ss_pred             cCCccCC--CCCcEEEeeCCcCcccCChhc---c--CCCCccEEeCCCCcCcccCchh-hccCcCcceeecccccccccC
Q 036717          240 MISTLNL--SSVEHLYLQNNALGGSIPNTF---F--RGSALETLDLRDNNFSGRIPHQ-INEHSNLRALLLRANYLQGPI  311 (580)
Q Consensus       240 ~~~~~~~--~~L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~  311 (580)
                      +......  ++|+.|++++|.+.+.+|...   .  .+++|+.|++++|+++ .+|.. +..+++|+.|++++|.++ .+
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence            5333333  459999999999987665322   2  3458999999999999 55554 458999999999999999 55


Q ss_pred             cccccCC--------CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccch
Q 036717          312 PHQLCRL--------RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD  383 (580)
Q Consensus       312 ~~~~~~l--------~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (580)
                      |..+...        ++|+.|++++|+++ .+|..+..                                          
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------  749 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------  749 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------
Confidence            5544332        38999999999998 67765431                                          


Q ss_pred             hhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEeccc------CcceecccccccCc
Q 036717          384 LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSY------NFLSGSIPESFSNL  457 (580)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l  457 (580)
                                             ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++      |.+.+.+|..|.++
T Consensus       750 -----------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          750 -----------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             -----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             -----------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence                                   017899999999999997 798999999999999976      88899999999999


Q ss_pred             ccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccC
Q 036717          458 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPI  498 (580)
Q Consensus       458 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  498 (580)
                      ++|+.|+|++|++ +.+|..+.  ++|+.|||++|++...-
T Consensus       806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             SSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             CCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence            9999999999999 68888765  69999999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=390.46  Aligned_cols=412  Identities=20%  Similarity=0.217  Sum_probs=303.1

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM   84 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L   84 (580)
                      ++|++|++++|.++ .++...+.++++|++|+|++|+++++..  ...+++|++|++++|+++ .+|..   .+++|++|
T Consensus        21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L   95 (520)
T 2z7x_B           21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL   95 (520)
T ss_dssp             TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred             ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence            67888999988888 5555556688889999999888887622  247788899999998888 67765   58889999


Q ss_pred             EcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCC--cEEEcccccC--CCcCCccccC---------
Q 036717           85 NISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL--IWLDLSNNNF--DGQIFPNYMN---------  150 (580)
Q Consensus        85 ~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~---------  150 (580)
                      ++++|++++ .+|..|+++++|++|++++|.+++    ..+..+++|  ++|++++|.+  .+..|..+..         
T Consensus        96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~  171 (520)
T 2z7x_B           96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV  171 (520)
T ss_dssp             ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred             eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence            999988886 467888888999999998888874    224667777  8888888888  5555555544         


Q ss_pred             -----------------CCCCCEEeccCcc-------ccccccccccCCCCCCEEEcccCCCCCCCchhhh---cCCCCC
Q 036717          151 -----------------LTQLQLLYLDNNH-------FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG---NFSYLQ  203 (580)
Q Consensus       151 -----------------l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~  203 (580)
                                       +++|+.|++++|.       +.+.++ .+..+++|+.|++++|.+.+..+..+.   ..++|+
T Consensus       172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~  250 (520)
T 2z7x_B          172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW  250 (520)
T ss_dssp             CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred             eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence                             4455555555554       333333 455566666666666655432221111   135777


Q ss_pred             EEEcccCcCCCcCchhc-----cCCCCCcEEEccCCcCccccCCcc----CCCCCcEEEeeCCcCcccCChhccCCCCcc
Q 036717          204 ILSMSKNLLEGNIPVQF-----NDLLDLEILNISENNLSGSMISTL----NLSSVEHLYLQNNALGGSIPNTFFRGSALE  274 (580)
Q Consensus       204 ~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  274 (580)
                      +|++++|.+.+.+|..+     ..+++|+.+++++|.+ ..+...+    ...+|+.|++++|.+....  .+..+++|+
T Consensus       251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~  327 (520)
T 2z7x_B          251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL  327 (520)
T ss_dssp             EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence            77777777776777766     6777777777777777 2221111    2256888888888776332  125677888


Q ss_pred             EEeCCCCcCcccCchhhccCcCcceeecccccccc--cCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCc
Q 036717          275 TLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQG--PIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL  352 (580)
Q Consensus       275 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~  352 (580)
                      +|++++|++++..|..+..+++|+.|++++|.+++  .+|..+..+++|+.|++++|.+++.+|....            
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~------------  395 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC------------  395 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC------------
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh------------
Confidence            88888888887778888888888888888888875  4556778888888888888888765554210            


Q ss_pred             cccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccc
Q 036717          353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD  432 (580)
Q Consensus       353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  432 (580)
                                                                            ..+++|+.|++++|++++..|..+. 
T Consensus       396 ------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~-  420 (520)
T 2z7x_B          396 ------------------------------------------------------SWTKSLLSLNMSSNILTDTIFRCLP-  420 (520)
T ss_dssp             ------------------------------------------------------CCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred             ------------------------------------------------------ccCccCCEEECcCCCCCcchhhhhc-
Confidence                                                                  0167899999999999988877665 


Q ss_pred             ccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       433 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                       ++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.|+.
T Consensus       421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence             79999999999999 7888788999999999999999954444499999999999999999998874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.4e-44  Score=374.38  Aligned_cols=379  Identities=20%  Similarity=0.260  Sum_probs=314.4

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      +.++.+++.++ .+|. +   .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            45777777777 6776 2   47888888888888877788888888888888888888767777667888889999998


Q ss_pred             cccCCCcCCccccCCCCCCEEeccCcccccccccc--ccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEcccCcCC
Q 036717          137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDG--LLRSTELMVLDISNNRLSGHIPSW-MGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~  213 (580)
                      +|.+++..+..|.++++|++|++++|.+++..+..  +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            88888777888888889999999998888654444  788889999999999888776765 788889999999999888


Q ss_pred             CcCchhccCC--CCCcEEEccCCcCccccCCc---------cCCCCCcEEEeeCCcCcccCChhccCC---CCccEEeCC
Q 036717          214 GNIPVQFNDL--LDLEILNISENNLSGSMIST---------LNLSSVEHLYLQNNALGGSIPNTFFRG---SALETLDLR  279 (580)
Q Consensus       214 ~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~  279 (580)
                      +..+..+..+  .+++.+++++|.+.+..+..         +.+++|++|++++|.+++..|..+...   ++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            7777777665  67888999998888765443         245789999999999988777766543   789999999


Q ss_pred             CCcCccc----------Cchhhcc--CcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhccccc
Q 036717          280 DNNFSGR----------IPHQINE--HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV  347 (580)
Q Consensus       280 ~n~l~~~----------~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~  347 (580)
                      +|.+.+.          .+..+..  .++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..      
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------  321 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------  321 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------
Confidence            8865432          1222222  368999999999999999999999999999999999998666655433      


Q ss_pred             CCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCC
Q 036717          348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIP  427 (580)
Q Consensus       348 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  427 (580)
                                                                                   +++|+.|++++|.+++..|
T Consensus       322 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~  340 (455)
T 3v47_A          322 -------------------------------------------------------------LTHLLKLNLSQNFLGSIDS  340 (455)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred             -------------------------------------------------------------cccCCEEECCCCccCCcCh
Confidence                                                                         6789999999999999989


Q ss_pred             cccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCc
Q 036717          428 SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTF  507 (580)
Q Consensus       428 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  507 (580)
                      ..|+.+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.||...++..|
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~  420 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  420 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence            99999999999999999999999999999999999999999999887888899999999999999999999976555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.1e-44  Score=384.03  Aligned_cols=478  Identities=16%  Similarity=0.143  Sum_probs=337.0

Q ss_pred             CCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717            6 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY   83 (580)
Q Consensus         6 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   83 (580)
                      |+...+.|.+++.++ .+|..+   .++|++|+|++|.+++...  ...+++|++|++++|.+++ ++...+..+++|++
T Consensus         4 C~~~~~c~~~~~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~   78 (549)
T 2z81_A            4 CDASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEH   78 (549)
T ss_dssp             ECTTSEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred             CCCCceEECCCCccc-cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCE
Confidence            566667899999998 899854   3799999999999987632  2478999999999999995 44444458999999


Q ss_pred             EEcccCcCccccchhhhcCCCCCEEEcccCcCccc-cchHHHhCCCCCcEEEcccccCCCcC-CccccCCCCCCEEeccC
Q 036717           84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGE-LSQSLVTNCFSLIWLDLSNNNFDGQI-FPNYMNLTQLQLLYLDN  161 (580)
Q Consensus        84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~  161 (580)
                      |++++|++++..|..|+++++|++|++++|.+++. ++. .+.++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            99999999988888899999999999999999842 333 4589999999999999854444 46899999999999999


Q ss_pred             ccccccccccccCCCCCCEEEcccCCCCCCCchh-hhcCCCCCEEEcccCcCCCcC--c-hhccCCCCCcEEEccCCcCc
Q 036717          162 NHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW-MGNFSYLQILSMSKNLLEGNI--P-VQFNDLLDLEILNISENNLS  237 (580)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~l~  237 (580)
                      |.+++..|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+++..  + .....+++|+.|++++|.++
T Consensus       158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          158 LSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred             CcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence            99999899999999999999999999874 4444 467999999999999998642  1 23345789999999999987


Q ss_pred             cccCCc-----cCCCCCcEEEeeCCcCcccC------ChhccCCCCccEEeCCCCcCccc-----CchhhccCcCcceee
Q 036717          238 GSMIST-----LNLSSVEHLYLQNNALGGSI------PNTFFRGSALETLDLRDNNFSGR-----IPHQINEHSNLRALL  301 (580)
Q Consensus       238 ~~~~~~-----~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~  301 (580)
                      +..+..     ..+++|+.+++++|.+.+..      ...+..+++++.|++.++.+...     ++..+...++|+.|+
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~  316 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT  316 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred             hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence            643322     26789999999999876531      12234455666666666554321     111223344566666


Q ss_pred             cccccccccCcccc-cCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccc----hhhcccccc
Q 036717          302 LRANYLQGPIPHQL-CRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDI----RDYYNSTVQ  376 (580)
Q Consensus       302 l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~  376 (580)
                      +++|.++ .+|..+ ..+++|+.|++++|++++.+|......    .....++.+++.++.+...+.    ......++.
T Consensus       317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~  391 (549)
T 2z81_A          317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK----GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS  391 (549)
T ss_dssp             EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT----TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred             eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhh----hccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence            6666555 344333 345666666666666654443221000    011234444444444443221    111122222


Q ss_pred             cccccchhhhhccccEEEEeeccccceecc--cccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccc
Q 036717          377 LRLDESDLRWLVKQVEVNFMTKNRYESYKG--VILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESF  454 (580)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  454 (580)
                      ++++.+                 .+..++.  ..+++|+.|++++|+++ .+|..+.  ++|++|++++|++++.+    
T Consensus       392 L~Ls~N-----------------~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----  447 (549)
T 2z81_A          392 LDISRN-----------------TFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----  447 (549)
T ss_dssp             EECTTC-----------------CCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----
T ss_pred             EECCCC-----------------CCccCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----
Confidence            222222                 2222221  12678889999999887 3444432  58899999999888643    


Q ss_pred             cCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC-cccCCcCccccCCCCCCCCC
Q 036717          455 SNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK-EQFSTFDESSYRGNLHLCGP  521 (580)
Q Consensus       455 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~  521 (580)
                      ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|.. ..+..+...++.+|++.|+.
T Consensus       448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence            57899999999999998 5665 467899999999999999877753 45566677777777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.6e-44  Score=392.54  Aligned_cols=361  Identities=20%  Similarity=0.240  Sum_probs=281.4

Q ss_pred             CcCccccchhhhcCCCCCEEEcccCcCcc-----------------ccchHH-HhCCCCCcEEEcccccCCCcCCccccC
Q 036717           89 NSFEGNIPSSIAKMQGLRFLDVSTNNFAG-----------------ELSQSL-VTNCFSLIWLDLSNNNFDGQIFPNYMN  150 (580)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~  150 (580)
                      |.+++ +|..++++++|++|+|++|.+++                 .+|..+ |.++++|++|++++|.+.+.+|..|.+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            55665 78888888888888888888886                 277665 347888888888888888888888888


Q ss_pred             CCCCCEEeccCcc-ccc-cccccccCC-------CCCCEEEcccCCCCCCCch--hhhcCCCCCEEEcccCcCCCcCchh
Q 036717          151 LTQLQLLYLDNNH-FSG-KIKDGLLRS-------TELMVLDISNNRLSGHIPS--WMGNFSYLQILSMSKNLLEGNIPVQ  219 (580)
Q Consensus       151 l~~L~~L~l~~n~-l~~-~~~~~l~~l-------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  219 (580)
                      +++|++|++++|+ +++ .+|..+..+       ++|++|++++|.+. .+|.  .++.+++|+.|++++|.++ .+| .
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence            8888888888887 776 666655444       48888888888888 6777  7888888888888888887 666 7


Q ss_pred             ccCCCCCcEEEccCCcCccccCCccCCCC-CcEEEeeCCcCcccCChhccCCCC--ccEEeCCCCcCcccCchhh---c-
Q 036717          220 FNDLLDLEILNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIPNTFFRGSA--LETLDLRDNNFSGRIPHQI---N-  292 (580)
Q Consensus       220 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~---~-  292 (580)
                      |..+++|+.|++++|.+...+.....+++ |++|++++|.++ .+|..+...+.  |+.|++++|++++.+|...   . 
T Consensus       591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            88888888888888888855545447777 888888888887 67777666543  8888888888887655322   2 


Q ss_pred             -cCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhc
Q 036717          293 -EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYY  371 (580)
Q Consensus       293 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  371 (580)
                       .+++|+.|++++|.++...+..+..+++|+.|++++|+++ .+|..+......                          
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~--------------------------  722 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG--------------------------  722 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS--------------------------
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc--------------------------
Confidence             3347888888888888433333457888888888888887 566543221000                          


Q ss_pred             ccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccc--cccCCCeEecccCcceec
Q 036717          372 NSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIG--DLQNIHGLNLSYNFLSGS  449 (580)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~  449 (580)
                                                       ....+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|.+++ 
T Consensus       723 ---------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-  767 (876)
T 4ecn_A          723 ---------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-  767 (876)
T ss_dssp             ---------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             ---------------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-
Confidence                                             0011568999999999999 7888887  99999999999999997 


Q ss_pred             ccccccCcccCCEEECCC------CcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCcCccccCCCCCC
Q 036717          450 IPESFSNLKMIESLDLSH------NKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHL  518 (580)
Q Consensus       450 ~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l  518 (580)
                      +|..+.++++|+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.+|... +..+...++.+|+..
T Consensus       768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNI  840 (876)
T ss_dssp             CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTC
T ss_pred             cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCC
Confidence            799999999999999976      889999999999999999999999999 7888762 356666777777643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-44  Score=382.17  Aligned_cols=449  Identities=20%  Similarity=0.221  Sum_probs=334.0

Q ss_pred             CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717           10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS   87 (580)
Q Consensus        10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~   87 (580)
                      ++||+++|+++ .+|..+.   ++|++|+|++|.+++...  ...+++|++|++++|++++..|..+ ..+++|++|+++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECC
T ss_pred             ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecC
Confidence            68999999999 7887543   899999999999988632  2478999999999999995445544 589999999999


Q ss_pred             cCcCccccchhhhcCCCCCEEEcccCcCcc-ccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCC--CEEeccCccc
Q 036717           88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAG-ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL--QLLYLDNNHF  164 (580)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l  164 (580)
                      +|+++ .+|..  .+++|++|++++|.+++ .+|.. ++++++|++|++++|.+++   ..+..+++|  ++|++++|.+
T Consensus        78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             CCcee-ecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            99998 56665  89999999999999985 35554 5889999999999999875   456677777  9999999998


Q ss_pred             --cccccccccCCC-CCCEEEcccCCCCCCCc-hhhhcCCCCCEEEcccCc-------CCCcCchhccCCCCCcEEEccC
Q 036717          165 --SGKIKDGLLRST-ELMVLDISNNRLSGHIP-SWMGNFSYLQILSMSKNL-------LEGNIPVQFNDLLDLEILNISE  233 (580)
Q Consensus       165 --~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~  233 (580)
                        .+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.|++++|.       +.+.++ .+..+++|+.|++++
T Consensus       151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~  229 (520)
T 2z7x_B          151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN  229 (520)
T ss_dssp             TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred             cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence              777777776655 34456777777765443 356678888888888886       444444 677888888888888


Q ss_pred             CcCccccCCcc----CCCCCcEEEeeCCcCcccCChhc-----cCCCCccEEeCCCCcCcccCc-hhhccC---cCccee
Q 036717          234 NNLSGSMISTL----NLSSVEHLYLQNNALGGSIPNTF-----FRGSALETLDLRDNNFSGRIP-HQINEH---SNLRAL  300 (580)
Q Consensus       234 n~l~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L  300 (580)
                      |.+.+......    ..++|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+| .++..+   ++|+.|
T Consensus       230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L  307 (520)
T 2z7x_B          230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF  307 (520)
T ss_dssp             EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred             cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence            87765332211    34588888888888887788777     7788888888888887  344 444443   567777


Q ss_pred             ecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccc
Q 036717          301 LLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLD  380 (580)
Q Consensus       301 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  380 (580)
                      ++++|.+....  .+..+++|++|++++|++++.+|..+...       ..++.+++.++.+...+....          
T Consensus       308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~l~~~~~----------  368 (520)
T 2z7x_B          308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHL-------TELETLILQMNQLKELSKIAE----------  368 (520)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCC-------SSCCEEECCSSCCCBHHHHHH----------
T ss_pred             EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccC-------CCCCEEEccCCccCccccchH----------
Confidence            77777765432  12566777788888887776666655432       244444444444432211000          


Q ss_pred             cchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCc-ccccccCCCeEecccCcceecccccccCccc
Q 036717          381 ESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPS-EIGDLQNIHGLNLSYNFLSGSIPESFSNLKM  459 (580)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  459 (580)
                                            .+  ..+++|+.|++++|.+++.+|. .+..+++|++|++++|.+++..|..+.  ++
T Consensus       369 ----------------------~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~  422 (520)
T 2z7x_B          369 ----------------------MT--TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR  422 (520)
T ss_dssp             ----------------------HH--TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred             ----------------------HH--hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence                                  00  1278999999999999985665 588999999999999999988888775  79


Q ss_pred             CCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC--cccCCcCccccCCCCCCCC
Q 036717          460 IESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK--EQFSTFDESSYRGNLHLCG  520 (580)
Q Consensus       460 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~~~~~~~~~n~~lc~  520 (580)
                      |+.|+|++|+++ .+|..+..+++|++|++++|+++ .+|..  ..+..+......+|+..|.
T Consensus       423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence            999999999999 78888889999999999999999 46653  3344555566666665553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1e-43  Score=385.81  Aligned_cols=449  Identities=21%  Similarity=0.185  Sum_probs=314.6

Q ss_pred             CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717            8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN   85 (580)
Q Consensus         8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~   85 (580)
                      ++++|||++|+|+ .+|...|.++++|++|+|++|+|++++..  ..+++|++|+|++|+++ .+|...|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence            7899999999998 77777778999999999999999887432  47889999999999998 68877777899999999


Q ss_pred             cccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCC----CEEeccC
Q 036717           86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL----QLLYLDN  161 (580)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~l~~  161 (580)
                      +++|++++..+..|+++++|++|++++|.+++......+..+++|++|++++|++++..+..+..+.++    ..++++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            999999987777899999999999999998743333445789999999999999987777766544433    3566666


Q ss_pred             ccccccccccccCCCCCCEEEcccCCCCC---------------------------------------------------
Q 036717          162 NHFSGKIKDGLLRSTELMVLDISNNRLSG---------------------------------------------------  190 (580)
Q Consensus       162 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---------------------------------------------------  190 (580)
                      |.+....+..+ ....++.+++.+|....                                                   
T Consensus       211 n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          211 NPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             CCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             CcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            66553322221 11222223322221100                                                   


Q ss_pred             -------CCch----------------------hhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccC
Q 036717          191 -------HIPS----------------------WMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI  241 (580)
Q Consensus       191 -------~~~~----------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  241 (580)
                             ..+.                      .+.....++.|++.+|.+....+   ..+..|+.+++..|.+.... 
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~-  365 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAF-  365 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBC-
T ss_pred             hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCCc-
Confidence                   0001                      12223334444444444332211   12334445555544443322 


Q ss_pred             CccCCCCCcEEEeeCCcCcc--cCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCC
Q 036717          242 STLNLSSVEHLYLQNNALGG--SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRL  318 (580)
Q Consensus       242 ~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l  318 (580)
                      ....+++|+.+++++|.+..  ..+..+....+|+.+++..+.... .+..+..+++|+.+++..+......+ ..+..+
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l  444 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  444 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccc
Confidence            22357888999999888753  345666777888899988888764 44567778888888888876664443 456778


Q ss_pred             CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeec
Q 036717          319 RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTK  398 (580)
Q Consensus       319 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (580)
                      ++++.++++.|.+.+..|..+....       .++.+++.++........                              
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~-------~L~~L~Ls~N~~~~~~~~------------------------------  487 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLS-------SLEVLKMAGNSFQENFLP------------------------------  487 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCT-------TCCEEECTTCEEGGGEEC------------------------------
T ss_pred             cccccccccccccccccccccccch-------hhhhhhhhhcccccccCc------------------------------
Confidence            8888888888888766665444321       222222222211100000                              


Q ss_pred             cccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhh
Q 036717          399 NRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL  478 (580)
Q Consensus       399 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  478 (580)
                         ..+  ..+++|+.|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|||++|+|++..|+.+
T Consensus       488 ---~~~--~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          488 ---DIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             ---SCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             ---hhh--hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence               001  127889999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             cCC-CCCCEEeccCCcccccCCCCcccCCc
Q 036717          479 TEL-HSLSKFDVSYNNLSGPIPDKEQFSTF  507 (580)
Q Consensus       479 ~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~  507 (580)
                      ..+ ++|++|+|++|+++|.|.. .+|..|
T Consensus       563 ~~l~~~L~~L~L~~Np~~C~C~~-~~~~~w  591 (635)
T 4g8a_A          563 QHFPSSLAFLNLTQNDFACTCEH-QSFLQW  591 (635)
T ss_dssp             TCCCTTCCEEECTTCCBCCSGGG-HHHHHH
T ss_pred             HhhhCcCCEEEeeCCCCcccCCc-HHHHHH
Confidence            988 6899999999999999963 334433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.9e-43  Score=375.48  Aligned_cols=440  Identities=21%  Similarity=0.233  Sum_probs=297.2

Q ss_pred             CCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717            6 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY   83 (580)
Q Consensus         6 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   83 (580)
                      +...+++++++|.++ .+|..+   .++|++|+|++|.++++..  ...+++|++|++++|.+++..|. .+..+++|++
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCE
T ss_pred             cCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCE
Confidence            445588999999998 688754   3789999999999988742  24788999999999999844344 4457899999


Q ss_pred             EEcccCcCccccchhhhcCCCCCEEEcccCcCccccc-hHHHhCCCCCcEEEcccccCCCcCCccccCCCCC--CEEecc
Q 036717           84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELS-QSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL--QLLYLD  160 (580)
Q Consensus        84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~  160 (580)
                      |++++|+++ .+|..  .+++|++|++++|.++ .++ ...+.++++|++|++++|.+++.   .+..+++|  ++|+++
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            999999998 56655  7899999999999988 433 23458899999999999998753   34445555  999999


Q ss_pred             Cccc--cccccccccCC--------------------------CCCCEEEcccCCCCC----CCchhhhcCC--------
Q 036717          161 NNHF--SGKIKDGLLRS--------------------------TELMVLDISNNRLSG----HIPSWMGNFS--------  200 (580)
Q Consensus       161 ~n~l--~~~~~~~l~~l--------------------------~~L~~L~L~~n~l~~----~~~~~~~~l~--------  200 (580)
                      +|.+  ++..|..+..+                          ++|+.+++++|....    .....+..++        
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9988  66666555443                          345555555543100    0011223333        


Q ss_pred             -------------------CCCEEEcccCcCCCcCchhc-----cCCCCCcEEEccCCcCccccCCcc----CCCCCcEE
Q 036717          201 -------------------YLQILSMSKNLLEGNIPVQF-----NDLLDLEILNISENNLSGSMISTL----NLSSVEHL  252 (580)
Q Consensus       201 -------------------~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~----~~~~L~~L  252 (580)
                                         +|++|++++|.+.+.+|..+     ..++.|+.+++..+.+ ..+....    ...+|++|
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L  336 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKML  336 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEE
Confidence                               34444444444444444333     2333333333333332 1110000    12457777


Q ss_pred             EeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccccc--CcccccCCCCCCEEEeeCCe
Q 036717          253 YLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP--IPHQLCRLRKLGIMDLSHNR  330 (580)
Q Consensus       253 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~  330 (580)
                      ++++|.+....  ....+++|++|++++|++++..|..+..+++|+.|++++|.+++.  +|..+..+++|+.|++++|+
T Consensus       337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence            77777765321  125667788888888888877777778888888888888887753  34567778888888888888


Q ss_pred             ecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccc
Q 036717          331 LYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILE  410 (580)
Q Consensus       331 l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  410 (580)
                      +++.+|....                                                                  ..++
T Consensus       415 l~~~~~~~~~------------------------------------------------------------------~~l~  428 (562)
T 3a79_B          415 LNSHAYDRTC------------------------------------------------------------------AWAE  428 (562)
T ss_dssp             CBSCCSSCCC------------------------------------------------------------------CCCT
T ss_pred             CCCccChhhh------------------------------------------------------------------cCcc
Confidence            7754553211                                                                  1168


Q ss_pred             cccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEecc
Q 036717          411 HMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS  490 (580)
Q Consensus       411 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  490 (580)
                      +|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+.++++|++|+|++|++++..+..+..+++|++|+++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence            899999999999987777665  79999999999999 677777799999999999999995444449999999999999


Q ss_pred             CCcccccCCCCcccCCcCccc--cCCCCCCCCCCCCCCCCC
Q 036717          491 YNNLSGPIPDKEQFSTFDESS--YRGNLHLCGPPINKSCTN  529 (580)
Q Consensus       491 ~N~l~~~~p~~~~~~~~~~~~--~~~n~~lc~~~~~~~C~~  529 (580)
                      +|+++|.||..+.+..|....  ...+...|+.|....|..
T Consensus       506 ~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          506 DNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             SCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred             CCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence            999999998543323231110  011122346677778865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-41  Score=353.92  Aligned_cols=381  Identities=20%  Similarity=0.212  Sum_probs=294.3

Q ss_pred             CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717           10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS   87 (580)
Q Consensus        10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~   87 (580)
                      +.++.+++.++ .+|.  .  .++|++|+|++|.+++...  ...+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            46777888887 7775  2  3778888888888876522  24678888888888888767766666678888888888


Q ss_pred             cCcCccccchhhhcCCCCCEEEcccCcCccccch-HHHhCCCCCcEEEcccccCCCcCCcc-ccCCCCCCEEeccCcccc
Q 036717           88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ-SLVTNCFSLIWLDLSNNNFDGQIFPN-YMNLTQLQLLYLDNNHFS  165 (580)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~  165 (580)
                      +|++++..|..|+++++|++|++++|.+++.++. ..+..+++|++|++++|.+++..+.. +.++++|++|++++|.++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            8888877788888888888888888888754433 23567888888888888888766655 678888888888888888


Q ss_pred             ccccccccCC--CCCCEEEcccCCCCCCCchhh--------hcCCCCCEEEcccCcCCCcCchhccCC---CCCcEEEcc
Q 036717          166 GKIKDGLLRS--TELMVLDISNNRLSGHIPSWM--------GNFSYLQILSMSKNLLEGNIPVQFNDL---LDLEILNIS  232 (580)
Q Consensus       166 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~  232 (580)
                      +..+..+..+  .+|+.|++++|.+.+..+..+        ..+++|++|++++|.+.+..+..+...   ++++.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            7777766554  678888888888775444332        245677888888887776666655433   677777777


Q ss_pred             CCcCccccCCccCCCCCcEEEeeCCcCcccCChhcc--CCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccccc
Q 036717          233 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFF--RGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP  310 (580)
Q Consensus       233 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  310 (580)
                      +|...+......             .+.+..+..+.  ..++|+.|++++|++++..|..+..+++|++|++++|.+++.
T Consensus       248 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          248 NSYNMGSSFGHT-------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             TCTTTSCCTTCC-------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccccccchh-------------hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            776554322211             11112222222  236899999999999988899999999999999999999988


Q ss_pred             CcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccc
Q 036717          311 IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ  390 (580)
Q Consensus       311 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (580)
                      .+..+..+++|+.|++++|.+++..|..+..                                                 
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------  345 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-------------------------------------------------  345 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTT-------------------------------------------------
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcC-------------------------------------------------
Confidence            8889999999999999999997655554433                                                 


Q ss_pred             cEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcc
Q 036717          391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL  470 (580)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  470 (580)
                                        +++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|++
T Consensus       346 ------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          346 ------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ------------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence                              67899999999999999999999999999999999999987778889999999999999999


Q ss_pred             cccCc
Q 036717          471 NGQIP  475 (580)
Q Consensus       471 ~~~~p  475 (580)
                      ++..|
T Consensus       408 ~~~~~  412 (455)
T 3v47_A          408 DCSCP  412 (455)
T ss_dssp             CCCTT
T ss_pred             ccCCC
Confidence            98876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-40  Score=359.49  Aligned_cols=457  Identities=20%  Similarity=0.173  Sum_probs=293.9

Q ss_pred             CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717           10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS   87 (580)
Q Consensus        10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~   87 (580)
                      +..+-++.+++ .+|..+   -+.+++|+|++|+|+++...  ..+++|++|||++|+|+ .+|...|.++++|++|+|+
T Consensus        34 ~~~~c~~~~l~-~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           34 ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             TEEECTTSCCS-SCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCCcC-ccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEcc
Confidence            34566666777 777632   14688888888888876432  36788888888888888 6777666788888888888


Q ss_pred             cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCc-CCccccCCCCCCEEeccCccccc
Q 036717           88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQ-IFPNYMNLTQLQLLYLDNNHFSG  166 (580)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~  166 (580)
                      +|++++..+.+|+++++|++|++++|+++ .++...++++++|++|++++|.++.. .+..+..+++|++|++++|++++
T Consensus       109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          109 GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            88888776777888888888888888887 56666668888888888888888753 45677788888888888888887


Q ss_pred             cccccccCCCC----CCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc---------------------------
Q 036717          167 KIKDGLLRSTE----LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN---------------------------  215 (580)
Q Consensus       167 ~~~~~l~~l~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------  215 (580)
                      ..+..+..+.+    ...++++.|.+....+..+. ...++.+++.+|.....                           
T Consensus       188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  266 (635)
T 4g8a_A          188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  266 (635)
T ss_dssp             ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             cccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence            77766654433    34678888887744333222 22333444433321100                           


Q ss_pred             -------------------------------CchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCC
Q 036717          216 -------------------------------IPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIP  264 (580)
Q Consensus       216 -------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~  264 (580)
                                                     ....+....+++.+++.++.+..... ......++.|++.+|.+....+
T Consensus       267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~  345 (635)
T 4g8a_A          267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPT  345 (635)
T ss_dssp             CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCC
T ss_pred             cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCc
Confidence                                           00111222334444444444332221 1134456666666666553322


Q ss_pred             hh-------------------ccCCCCccEEeCCCCcCc--ccCchhhccCcCcceeecccccccccCcccccCCCCCCE
Q 036717          265 NT-------------------FFRGSALETLDLRDNNFS--GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGI  323 (580)
Q Consensus       265 ~~-------------------~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  323 (580)
                      ..                   ...+++|+.+++++|.+.  +..+..+..+.+|+.+++..+.+.. .+..+..+++|+.
T Consensus       346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~  424 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEH  424 (635)
T ss_dssp             CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCE
T ss_pred             ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccc
Confidence            11                   123344555555555443  1233333444455555555544432 2333444555555


Q ss_pred             EEeeCCeecCccChhh-hhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccc
Q 036717          324 MDLSHNRLYGSIPACI-TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYE  402 (580)
Q Consensus       324 L~l~~n~l~~~~p~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (580)
                      ++++++......+... ...       ..+..++                                       ...+...
T Consensus       425 l~l~~~~~~~~~~~~~~~~l-------~~l~~l~---------------------------------------ls~n~l~  458 (635)
T 4g8a_A          425 LDFQHSNLKQMSEFSVFLSL-------RNLIYLD---------------------------------------ISHTHTR  458 (635)
T ss_dssp             EECTTSEEESTTSSCTTTTC-------TTCCEEE---------------------------------------CTTSCCE
T ss_pred             hhhhhccccccccccccccc-------ccccccc---------------------------------------ccccccc
Confidence            5555554433222111 000       0111111                                       1111111


Q ss_pred             eecc---cccccccEEEccCCcc-eeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhh
Q 036717          403 SYKG---VILEHMAGLDLSSNEL-TGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL  478 (580)
Q Consensus       403 ~~~~---~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  478 (580)
                      ....   ..++.++.|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|+|++..|..|
T Consensus       459 ~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  538 (635)
T 4g8a_A          459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  538 (635)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred             cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH
Confidence            1111   2268899999999985 45688999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEeccCCcccccCCCCc-cc-CCcCccccCCCCCCCCC
Q 036717          479 TELHSLSKFDVSYNNLSGPIPDKE-QF-STFDESSYRGNLHLCGP  521 (580)
Q Consensus       479 ~~l~~L~~L~Ls~N~l~~~~p~~~-~~-~~~~~~~~~~n~~lc~~  521 (580)
                      ..+++|++|||++|++++..|..- .+ ..+...+..+||+.|++
T Consensus       539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            999999999999999999888652 22 45666777888887754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.9e-40  Score=350.58  Aligned_cols=386  Identities=21%  Similarity=0.249  Sum_probs=309.5

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC--CCCCCCccEEEccCCCCCccCChhHhhcCCCCcEE
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL--TGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYM   84 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L   84 (580)
                      ++|++|++++|.++ .++...+.++++|++|+|++|.++++..  ...+++|++|++++|.++ .+|..   .+++|++|
T Consensus        52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred             CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence            68999999999999 6666567799999999999999998633  247899999999999999 78876   69999999


Q ss_pred             EcccCcCccc-cchhhhcCCCCCEEEcccCcCccccchHHHhCCCCC--cEEEcccccC--CCcCCccccC---------
Q 036717           85 NISKNSFEGN-IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSL--IWLDLSNNNF--DGQIFPNYMN---------  150 (580)
Q Consensus        85 ~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~---------  150 (580)
                      ++++|++++. .|..|+++++|++|++++|.+++ ..   +..+++|  ++|++++|.+  ++..+..+..         
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~  202 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV  202 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence            9999999973 46899999999999999999884 22   3455666  9999999998  6655555443         


Q ss_pred             -----------------CCCCCEEeccCcc----------------------------cccc----ccccccCCCCCCEE
Q 036717          151 -----------------LTQLQLLYLDNNH----------------------------FSGK----IKDGLLRSTELMVL  181 (580)
Q Consensus       151 -----------------l~~L~~L~l~~n~----------------------------l~~~----~~~~l~~l~~L~~L  181 (580)
                                       +++|+.+++++|.                            +.+.    .+.. ...++|++|
T Consensus       203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L  281 (562)
T 3a79_B          203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL  281 (562)
T ss_dssp             ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEE
T ss_pred             ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEE
Confidence                             4466677776653                            1100    0111 123489999


Q ss_pred             EcccCCCCCCCchhh-----hcCCCCCEEEcccCcCCCcCc-hhccC---CCCCcEEEccCCcCccccCCccCCCCCcEE
Q 036717          182 DISNNRLSGHIPSWM-----GNFSYLQILSMSKNLLEGNIP-VQFND---LLDLEILNISENNLSGSMISTLNLSSVEHL  252 (580)
Q Consensus       182 ~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  252 (580)
                      ++++|.+.+.+|..+     ..++.|+.+++..+.+  .+| ..+..   ..++++|++++|.+..... ...+++|++|
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L  358 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFL  358 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred             EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEE
Confidence            999999998888776     6666777777777776  333 33222   3679999999999865442 1368899999


Q ss_pred             EeeCCcCcccCChhccCCCCccEEeCCCCcCcc--cCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCC
Q 036717          253 YLQNNALGGSIPNTFFRGSALETLDLRDNNFSG--RIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHN  329 (580)
Q Consensus       253 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  329 (580)
                      ++++|.+++..|..+..+++|++|++++|++++  .+|..+..+++|+.|++++|.+++.+| ..+..+++|+.|++++|
T Consensus       359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            999999998899999999999999999999996  345678999999999999999998455 45888999999999999


Q ss_pred             eecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccc
Q 036717          330 RLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL  409 (580)
Q Consensus       330 ~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  409 (580)
                      ++++.+|..+                                                                     .
T Consensus       439 ~l~~~~~~~l---------------------------------------------------------------------~  449 (562)
T 3a79_B          439 MLTGSVFRCL---------------------------------------------------------------------P  449 (562)
T ss_dssp             CCCGGGGSSC---------------------------------------------------------------------C
T ss_pred             CCCcchhhhh---------------------------------------------------------------------c
Confidence            9986554321                                                                     2


Q ss_pred             ccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717          410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  475 (580)
Q Consensus       410 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  475 (580)
                      ++|+.|++++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+..+
T Consensus       450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            58899999999999 677777799999999999999995444449999999999999999997655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=338.55  Aligned_cols=345  Identities=19%  Similarity=0.194  Sum_probs=244.5

Q ss_pred             CEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEccc
Q 036717          106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN  185 (580)
Q Consensus       106 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  185 (580)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555554 455432   24556666666666655555666666666666666666655566666666666666666


Q ss_pred             CCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCC
Q 036717          186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP  264 (580)
Q Consensus       186 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~  264 (580)
                      |.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            66665444556666666777776666666666666667777777777777766655544 66777777777777776666


Q ss_pred             hhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccCh-hhhhhc
Q 036717          265 NTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA-CITNSL  343 (580)
Q Consensus       265 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~  343 (580)
                      ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.++ .+|. .+..  
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~--  246 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRH--  246 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTT--
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcC--
Confidence            66777888888888888887777777778888888888887777666666666668888888888886 3332 2221  


Q ss_pred             ccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce
Q 036717          344 FWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT  423 (580)
Q Consensus       344 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  423 (580)
                                                                                       +++|+.|+|++|.++
T Consensus       247 -----------------------------------------------------------------l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          247 -----------------------------------------------------------------LVYLRFLNLSYNPIS  261 (477)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCSSCCC
T ss_pred             -----------------------------------------------------------------ccccCeeECCCCcCC
Confidence                                                                             678888999999988


Q ss_pred             eeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcc
Q 036717          424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQ  503 (580)
Q Consensus       424 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  503 (580)
                      +..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|+++|.|+..+.
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~  341 (477)
T 2id5_A          262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV  341 (477)
T ss_dssp             EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH
T ss_pred             ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH
Confidence            88888888899999999999999988888899999999999999999887777888889999999999999888765433


Q ss_pred             cCCcCccccCCCCCCCCCC
Q 036717          504 FSTFDESSYRGNLHLCGPP  522 (580)
Q Consensus       504 ~~~~~~~~~~~n~~lc~~~  522 (580)
                      +.......+.++...|..|
T Consensus       342 ~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          342 FRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             HTTTTSSCCTTCCCBEEES
T ss_pred             HhhhhccccCccCceeCCc
Confidence            3333334455666666443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.2e-39  Score=331.33  Aligned_cols=375  Identities=25%  Similarity=0.338  Sum_probs=244.9

Q ss_pred             cCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCC---CCCC-------------ccEEEccCCCCCc
Q 036717            5 HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTG---AQHG-------------LLSLDISKNSFTG   68 (580)
Q Consensus         5 ~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~-------------L~~L~L~~n~l~~   68 (580)
                      +.++|++|++++|.+ |.+|.++ .++++|++|++++|.+++. .+.   .+.+             +++|++++|.++ 
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-   84 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-   84 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-
T ss_pred             ccccchhhhcccCch-hhCChhH-hcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCccc-
Confidence            357899999999999 5999876 5999999999999998864 332   3333             588899999888 


Q ss_pred             cCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccc
Q 036717           69 ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY  148 (580)
Q Consensus        69 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  148 (580)
                      .+|.    ..++|++|++++|.+++ +|..   +++|++|++++|.++ .++.    ..++|++|++++|.+++ +| .|
T Consensus        85 ~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~  149 (454)
T 1jl5_A           85 SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-EL  149 (454)
T ss_dssp             CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CC
T ss_pred             cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-cc
Confidence            4654    24788999999998886 5643   478889999988887 4443    12688899999888885 55 58


Q ss_pred             cCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717          149 MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI  228 (580)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  228 (580)
                      ..+++|++|++++|++++ +|..   ..+|++|++++|.+.+ +| .++.+++|++|++++|.+++ +|..   .++|++
T Consensus       150 ~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~  219 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES  219 (454)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred             CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence            888889999998888875 4543   3588888888888885 45 47888888888888888874 3332   257888


Q ss_pred             EEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccc
Q 036717          229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ  308 (580)
Q Consensus       229 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  308 (580)
                      |++++|.++..+ ....+++|++|++++|.+++ +|..   .++|+.|++++|++++ +|..   .++|+.|++++|.++
T Consensus       220 L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          220 IVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS  290 (454)
T ss_dssp             EECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             EECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence            888888887544 44478888888888888874 4432   3678888888888875 4443   367888888888887


Q ss_pred             ccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhc
Q 036717          309 GPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLV  388 (580)
Q Consensus       309 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (580)
                      +. +..   .++|+.|++++|++++ ++.                                                   
T Consensus       291 ~l-~~~---~~~L~~L~l~~N~l~~-i~~---------------------------------------------------  314 (454)
T 1jl5_A          291 GL-SEL---PPNLYYLNASSNEIRS-LCD---------------------------------------------------  314 (454)
T ss_dssp             EE-SCC---CTTCCEEECCSSCCSE-ECC---------------------------------------------------
T ss_pred             cc-cCc---CCcCCEEECcCCcCCc-ccC---------------------------------------------------
Confidence            52 211   2578888888888763 110                                                   


Q ss_pred             cccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCC
Q 036717          389 KQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN  468 (580)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  468 (580)
                                         ..++|+.|++++|++++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++|
T Consensus       315 -------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          315 -------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             -------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred             -------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence                               02478888888888885 5554   578888999988888 4565   4678889999999


Q ss_pred             cccc--cCchhhcCC-------------CCCCEEeccCCcccc--cCCC
Q 036717          469 KLNG--QIPPQLTEL-------------HSLSKFDVSYNNLSG--PIPD  500 (580)
Q Consensus       469 ~l~~--~~p~~l~~l-------------~~L~~L~Ls~N~l~~--~~p~  500 (580)
                      ++++  .+|..+..+             ++|++|++++|++++  .+|.
T Consensus       368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCC------------------------------
T ss_pred             CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence            8888  678887777             889999999999998  6774

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.2e-38  Score=326.25  Aligned_cols=344  Identities=25%  Similarity=0.319  Sum_probs=189.6

Q ss_pred             CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEE
Q 036717           54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWL  133 (580)
Q Consensus        54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  133 (580)
                      ++++.|+++++.+. .+|. + ..+++|++|++++|.+++..+  +.++++|++|++++|.+. .++.  +.++++|++|
T Consensus        46 ~~l~~L~l~~~~i~-~l~~-~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLGIK-SIDG-V-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEE
T ss_pred             ccccEEecCCCCCc-cCcc-h-hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEE
Confidence            34444444444444 3332 1 234455555555555443322  445555555555555444 2222  3445555555


Q ss_pred             EcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717          134 DLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       134 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  213 (580)
                      ++++|.+++..  .+..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+..  .+..+++|+.|++++|.+.
T Consensus       118 ~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDID--PLKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            55555444321  144555555555555554432 1 24445555555553 2232221  1455555555555555554


Q ss_pred             CcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc
Q 036717          214 GNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE  293 (580)
Q Consensus       214 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  293 (580)
                      +.  ..+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            22  224555555555555555554433 22455566666666665532  245566666777777766664433  566


Q ss_pred             CcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhccc
Q 036717          294 HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNS  373 (580)
Q Consensus       294 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  373 (580)
                      +++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +.                                 
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~---------------------------------  306 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS---------------------------------  306 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG---------------------------------
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc---------------------------------
Confidence            6677777777776664433  6666777777777777653221  11                                 


Q ss_pred             ccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccccc
Q 036717          374 TVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES  453 (580)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  453 (580)
                                                        .+++|+.|++++|++++..|  +..+++|++|++++|.+++.  ..
T Consensus       307 ----------------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  348 (466)
T 1o6v_A          307 ----------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS  348 (466)
T ss_dssp             ----------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ----------------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence                                              15667777777777775544  66777777777777777754  35


Q ss_pred             ccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccc
Q 036717          454 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSG  496 (580)
Q Consensus       454 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  496 (580)
                      +.++++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            6777777777777777776665  6777777777777777776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-37  Score=323.27  Aligned_cols=357  Identities=24%  Similarity=0.314  Sum_probs=303.2

Q ss_pred             CCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccc
Q 036717           17 NKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP   96 (580)
Q Consensus        17 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   96 (580)
                      ..+.+.++.   ..+++++.|+++++.+..++....+++|++|++++|.+. .++.  +..+++|++|++++|.+++..+
T Consensus        34 ~~~~~~i~~---~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~  107 (466)
T 1o6v_A           34 TNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP  107 (466)
T ss_dssp             SSTTSEECH---HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             cccccccCh---hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh
Confidence            344444443   246789999999999988755568899999999999998 4555  4589999999999999996654


Q ss_pred             hhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCC
Q 036717           97 SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRST  176 (580)
Q Consensus        97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~  176 (580)
                        ++++++|++|++++|.++ .++.  +..+++|++|++++|.+.+.  ..+..+++|++|+++ +.+.+..  .+..++
T Consensus       108 --~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~  177 (466)
T 1o6v_A          108 --LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLT  177 (466)
T ss_dssp             --GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCT
T ss_pred             --hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCC
Confidence              999999999999999998 5554  68999999999999999863  358899999999997 4555333  388999


Q ss_pred             CCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeC
Q 036717          177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQN  256 (580)
Q Consensus       177 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  256 (580)
                      +|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.. ....+++|++|++++
T Consensus       178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN  252 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred             CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCC
Confidence            999999999999854  348899999999999999986655  778999999999999998753 333889999999999


Q ss_pred             CcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccC
Q 036717          257 NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP  336 (580)
Q Consensus       257 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  336 (580)
                      |.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|
T Consensus       253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            99986554  8889999999999999986544  8889999999999999997544  7899999999999999986443


Q ss_pred             hhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEE
Q 036717          337 ACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLD  416 (580)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  416 (580)
                        +..                                                                   +++|+.|+
T Consensus       327 --~~~-------------------------------------------------------------------l~~L~~L~  337 (466)
T 1o6v_A          327 --VSS-------------------------------------------------------------------LTKLQRLF  337 (466)
T ss_dssp             --GGG-------------------------------------------------------------------CTTCCEEE
T ss_pred             --hcc-------------------------------------------------------------------CccCCEeE
Confidence              211                                                                   78999999


Q ss_pred             ccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccccc
Q 036717          417 LSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ  473 (580)
Q Consensus       417 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  473 (580)
                      +++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999999965  578999999999999999998877  89999999999999999963

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.3e-38  Score=326.78  Aligned_cols=354  Identities=20%  Similarity=0.192  Sum_probs=202.9

Q ss_pred             CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEE
Q 036717           30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLD  109 (580)
Q Consensus        30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  109 (580)
                      ++++|++|++++|.+++++....+++|++|++++|.+++ +|   +..+++|++|++++|.+++. +  ++++++|++|+
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            444555555555554443222244455555555555442 32   22455555555555555532 2  45555555555


Q ss_pred             cccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC
Q 036717          110 VSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS  189 (580)
Q Consensus       110 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  189 (580)
                      +++|.+++ ++   +..+++|++|++++|++++.   .+..+++|++|++++|...+.+  .+..+++|++|++++|.++
T Consensus       113 L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          113 CDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             CCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence            55555552 33   34555555555555555542   2445555555555555333232  2445555566666665555


Q ss_pred             CCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccC
Q 036717          190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR  269 (580)
Q Consensus       190 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  269 (580)
                      + +|  ++.+++|+.|++++|.+++.   .+..+++|+.|++++|.+++.+  ...+++|++|++++|.+++..   +..
T Consensus       184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~  252 (457)
T 3bz5_A          184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VST  252 (457)
T ss_dssp             C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred             e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence            4 23  45555666666666655543   2555566666666666665533  225566666666666665432   334


Q ss_pred             CCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCC
Q 036717          270 GSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN  349 (580)
Q Consensus       270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~  349 (580)
                      +++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.....        
T Consensus       253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~--------  308 (457)
T 3bz5_A          253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAG--------  308 (457)
T ss_dssp             CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCC--------
T ss_pred             CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCc--------
Confidence            455666665554              24455566665555444  345566666666666665555531111        


Q ss_pred             CCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcc
Q 036717          350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSE  429 (580)
Q Consensus       350 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  429 (580)
                        +..+++                                                 ...++|+.|++++|++++. +  
T Consensus       309 --L~~L~l-------------------------------------------------~~~~~L~~L~L~~N~l~~l-~--  334 (457)
T 3bz5_A          309 --ITELDL-------------------------------------------------SQNPKLVYLYLNNTELTEL-D--  334 (457)
T ss_dssp             --CSCCCC-------------------------------------------------TTCTTCCEEECTTCCCSCC-C--
T ss_pred             --ceEech-------------------------------------------------hhcccCCEEECCCCccccc-c--
Confidence              111100                                                 1156888999999999974 3  


Q ss_pred             cccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC
Q 036717          430 IGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK  501 (580)
Q Consensus       430 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  501 (580)
                      ++.+++|+.|++++|++++        ++.|+.|++++|++.|.     ..+..|..+++++|+++|.+|..
T Consensus       335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            8899999999999999985        24567788999999876     34567888899999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-38  Score=328.38  Aligned_cols=375  Identities=25%  Similarity=0.295  Sum_probs=270.5

Q ss_pred             ccccCCCCCEEECCCCCCcccCchHHhhCCCC-------------CcEEEccCCcccCCCCCCCCCCccEEEccCCCCCc
Q 036717            2 FLRHQFNLKYLDLSHNKLAGNFPTWLLENNTK-------------LEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTG   68 (580)
Q Consensus         2 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~   68 (580)
                      .|.++++|++|++++|+++|.+|..+. .+++             +++|++++|.++++  +...++|++|++++|.+++
T Consensus        29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l--p~~~~~L~~L~l~~n~l~~  105 (454)
T 1jl5_A           29 EAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSL--PELPPHLESLVASCNSLTE  105 (454)
T ss_dssp             -----CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCC--CSCCTTCSEEECCSSCCSS
T ss_pred             hHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccC--CCCcCCCCEEEccCCcCCc
Confidence            467899999999999999989998654 5665             59999999999985  3356899999999999995


Q ss_pred             cCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccc
Q 036717           69 ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY  148 (580)
Q Consensus        69 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  148 (580)
                       +|.    .+++|++|++++|++++ +|..   .++|++|++++|.++ .+|.  +.++++|++|++++|.+++ +|.. 
T Consensus       106 -lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~~-  171 (454)
T 1jl5_A          106 -LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPDL-  171 (454)
T ss_dssp             -CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCCC-
T ss_pred             -ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCCC-
Confidence             775    35899999999999985 3321   278999999999999 5884  6899999999999999985 4443 


Q ss_pred             cCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717          149 MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI  228 (580)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  228 (580)
                        .++|++|++++|.+++ +| .+..+++|++|++++|.+.+ +|..   .++|++|++++|.++ .+| .+..+++|++
T Consensus       172 --~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~  241 (454)
T 1jl5_A          172 --PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTT  241 (454)
T ss_dssp             --CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCE
T ss_pred             --cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCE
Confidence              3599999999999986 55 58999999999999999985 4432   258999999999998 566 4899999999


Q ss_pred             EEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccc
Q 036717          229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ  308 (580)
Q Consensus       229 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  308 (580)
                      |++++|.+++.+.   .+++|++|++++|.+++ +|..   .++|+.|++++|++++. |..   .++|+.|++++|.++
T Consensus       242 L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          242 IYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIR  310 (454)
T ss_dssp             EECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCS
T ss_pred             EECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCC
Confidence            9999999987554   34899999999999985 5543   37899999999999862 221   268999999999998


Q ss_pred             ccCcccccCC-CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhh
Q 036717          309 GPIPHQLCRL-RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWL  387 (580)
Q Consensus       309 ~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (580)
                      +. +    .+ ++|+.|++++|++++ +|..                                                 
T Consensus       311 ~i-~----~~~~~L~~L~Ls~N~l~~-lp~~-------------------------------------------------  335 (454)
T 1jl5_A          311 SL-C----DLPPSLEELNVSNNKLIE-LPAL-------------------------------------------------  335 (454)
T ss_dssp             EE-C----CCCTTCCEEECCSSCCSC-CCCC-------------------------------------------------
T ss_pred             cc-c----CCcCcCCEEECCCCcccc-cccc-------------------------------------------------
Confidence            52 2    33 589999999999974 4431                                                 


Q ss_pred             ccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCccee--cccccccCc--------
Q 036717          388 VKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG--SIPESFSNL--------  457 (580)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l--------  457 (580)
                                           +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|.+++.+        
T Consensus       336 ---------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~  390 (454)
T 1jl5_A          336 ---------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE  390 (454)
T ss_dssp             ---------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----
T ss_pred             ---------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccc
Confidence                                 457788888888888 4555   46788888888888887  677777777        


Q ss_pred             -----ccCCEEECCCCcccc--cCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          458 -----KMIESLDLSHNKLNG--QIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       458 -----~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                           ++|+.|++++|++++  .+|.      +++.|.+++|.+.+.+|.
T Consensus       391 i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          391 VPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             --------------------------------------------------
T ss_pred             cccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence                 889999999999997  5553      467778899988887653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-37  Score=321.30  Aligned_cols=196  Identities=18%  Similarity=0.201  Sum_probs=88.8

Q ss_pred             EEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcC
Q 036717           36 VLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF  115 (580)
Q Consensus        36 ~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  115 (580)
                      .++.+++.++.++ ....++++.|++++|.+++ ++...+..+++|++|++++|.+++..|.+|+++++|++|+|++|.+
T Consensus        15 ~v~c~~~~l~~ip-~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           15 AVLCHRKRFVAVP-EGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             EEECCSCCCSSCC-SCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCcCC-CCCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            4444444444431 1123344555555555442 2222223445555555555555444444455555555555555544


Q ss_pred             ccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchh
Q 036717          116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW  195 (580)
Q Consensus       116 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  195 (580)
                      + .++...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus        93 ~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             C-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             C-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            4 344433444444555555544444444444444444444444444444444444444444444444444444333334


Q ss_pred             hhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCC
Q 036717          196 MGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN  234 (580)
Q Consensus       196 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  234 (580)
                      +..+++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            444444444444444444333334444444444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.5e-37  Score=311.34  Aligned_cols=333  Identities=21%  Similarity=0.201  Sum_probs=199.8

Q ss_pred             CCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEE
Q 036717          103 QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD  182 (580)
Q Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (580)
                      +++++|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34444444444443 34444444444444444444444443334444445555555555554444444444455555555


Q ss_pred             cccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCccc
Q 036717          183 ISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS  262 (580)
Q Consensus       183 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~  262 (580)
                      +++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++...  ..+++|++|++++|.+++ 
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~n~l~~-  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLST-  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--GGCTTCSEEECCSSCCSE-
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--ccccccceeecccccccc-
Confidence            55555543333334445555555555555554444445555555555555555544321  134555666666655542 


Q ss_pred             CChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhh
Q 036717          263 IPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS  342 (580)
Q Consensus       263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  342 (580)
                          +...++|+.|++++|.++.. |..  ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..+.. 
T Consensus       201 ----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-  270 (390)
T 3o6n_A          201 ----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK-  270 (390)
T ss_dssp             ----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT-
T ss_pred             ----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc-
Confidence                12234566677777666533 222  235677777777777643  45667777777777777776555544432 


Q ss_pred             cccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcc
Q 036717          343 LFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNEL  422 (580)
Q Consensus       343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  422 (580)
                                                                                        +++|+.|++++|++
T Consensus       271 ------------------------------------------------------------------l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          271 ------------------------------------------------------------------MQRLERLYISNNRL  284 (390)
T ss_dssp             ------------------------------------------------------------------CSSCCEEECCSSCC
T ss_pred             ------------------------------------------------------------------cccCCEEECCCCcC
Confidence                                                                              56777888888888


Q ss_pred             eeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCc
Q 036717          423 TGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKE  502 (580)
Q Consensus       423 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  502 (580)
                      ++ +|..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+++.. |  +..+++|++|++++|+++|.+.. .
T Consensus       285 ~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~  358 (390)
T 3o6n_A          285 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-A  358 (390)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-H
T ss_pred             cc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-H
Confidence            74 4555677889999999999998 5677788899999999999999854 3  67788999999999999986543 4


Q ss_pred             ccCCcCccccCCCCCCCCC
Q 036717          503 QFSTFDESSYRGNLHLCGP  521 (580)
Q Consensus       503 ~~~~~~~~~~~~n~~lc~~  521 (580)
                      .+..+....+.++...|..
T Consensus       359 ~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          359 LFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             HTTTCCTTTBCCCCSCCCT
T ss_pred             HHHHHHhhcccccCceecc
Confidence            4555666666666666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2e-36  Score=324.36  Aligned_cols=334  Identities=21%  Similarity=0.203  Sum_probs=215.2

Q ss_pred             CCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEE
Q 036717          103 QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLD  182 (580)
Q Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (580)
                      ++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            44455555555444 44444444555555555555555544444555555555555555555544444455555555555


Q ss_pred             cccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCccc
Q 036717          183 ISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS  262 (580)
Q Consensus       183 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~  262 (580)
                      +++|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|++|++++|.+++.+.  ..+++|+.|++++|.+++ 
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~-  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLST-  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSE-
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCcccc-
Confidence            55555554444444555555555555555555555555555555555555555554422  134566666666666553 


Q ss_pred             CChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhh
Q 036717          263 IPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS  342 (580)
Q Consensus       263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  342 (580)
                          +...++|+.|++++|.++.. +..+  .++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+.. 
T Consensus       207 ----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-  276 (597)
T 3oja_B          207 ----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-  276 (597)
T ss_dssp             ----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT-
T ss_pred             ----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC-
Confidence                22334677777777776633 2222  2567777777777765  356777788888888888887666655433 


Q ss_pred             cccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcc
Q 036717          343 LFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNEL  422 (580)
Q Consensus       343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  422 (580)
                                                                                        +++|+.|+|++|.+
T Consensus       277 ------------------------------------------------------------------l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          277 ------------------------------------------------------------------MQRLERLYISNNRL  290 (597)
T ss_dssp             ------------------------------------------------------------------CSSCCEEECTTSCC
T ss_pred             ------------------------------------------------------------------ccCCCEEECCCCCC
Confidence                                                                              56788888888888


Q ss_pred             eeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCc
Q 036717          423 TGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKE  502 (580)
Q Consensus       423 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  502 (580)
                      ++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++..   +..+++|++|++++|+++|.++. .
T Consensus       291 ~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~  364 (597)
T 3oja_B          291 VA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-A  364 (597)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-H
T ss_pred             CC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-H
Confidence            85 4666778899999999999999 67778889999999999999998653   66788999999999999987643 4


Q ss_pred             ccCCcCccccCCCCCCCCCC
Q 036717          503 QFSTFDESSYRGNLHLCGPP  522 (580)
Q Consensus       503 ~~~~~~~~~~~~n~~lc~~~  522 (580)
                      ++..+....+.++...|+.+
T Consensus       365 ~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          365 LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             HTTTCCTTTBCCCCCCCCTT
T ss_pred             HHHHHhhhccccccccCCcc
Confidence            56667777788888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=306.73  Aligned_cols=358  Identities=19%  Similarity=0.194  Sum_probs=291.8

Q ss_pred             cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717            3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV   82 (580)
Q Consensus         3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   82 (580)
                      +.++++|++|++++|.++ .+| . +..+++|++|++++|.+++++ ...+++|++|++++|.+++ ++   +..+++|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~  109 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-LD---VTPLTKLT  109 (457)
T ss_dssp             HHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC---CTTCTTCC
T ss_pred             hhHcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-ee---cCCCCcCC
Confidence            456899999999999998 456 3 568999999999999999974 5678999999999999985 54   35799999


Q ss_pred             EEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCc
Q 036717           83 YMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNN  162 (580)
Q Consensus        83 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (580)
                      +|++++|++++. |  ++.+++|++|++++|.+++ ++   ++.+++|++|++++|...+.+  .+..+++|++|++++|
T Consensus       110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            999999999964 4  8899999999999999984 54   578999999999999655444  5788999999999999


Q ss_pred             cccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCC
Q 036717          163 HFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIS  242 (580)
Q Consensus       163 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  242 (580)
                      ++++. |  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  +..+++|+.|++++|.+++.+..
T Consensus       181 ~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~  251 (457)
T 3bz5_A          181 KITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS  251 (457)
T ss_dssp             CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred             cccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence            99863 4  78899999999999999865   38889999999999999986 45  88899999999999999987633


Q ss_pred             ccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc--------c
Q 036717          243 TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH--------Q  314 (580)
Q Consensus       243 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~  314 (580)
                        .+++|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|.        .
T Consensus       252 --~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~  313 (457)
T 3bz5_A          252 --TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD  313 (457)
T ss_dssp             --TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             --HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence              5788999887665              45677888888877776  46788899999999876665553        2


Q ss_pred             ccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEE
Q 036717          315 LCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVN  394 (580)
Q Consensus       315 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (580)
                      +..+++|+.|++++|++++ ++  +.                                                      
T Consensus       314 l~~~~~L~~L~L~~N~l~~-l~--l~------------------------------------------------------  336 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNTELTE-LD--VS------------------------------------------------------  336 (457)
T ss_dssp             CTTCTTCCEEECTTCCCSC-CC--CT------------------------------------------------------
T ss_pred             hhhcccCCEEECCCCcccc-cc--cc------------------------------------------------------
Confidence            4566778888888888765 21  11                                                      


Q ss_pred             EeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccC
Q 036717          395 FMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI  474 (580)
Q Consensus       395 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  474 (580)
                                   .+++|+.|++++|++++        ++.|..|++++|.+.|.     +.+..|+.+++++|+++|.+
T Consensus       337 -------------~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~i  390 (457)
T 3bz5_A          337 -------------HNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAV  390 (457)
T ss_dssp             -------------TCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEEC
T ss_pred             -------------cCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEc
Confidence                         17889999999999985        35788889999999986     35678999999999999998


Q ss_pred             chhhcCCCCCCEEeccCCccc
Q 036717          475 PPQLTELHSLSKFDVSYNNLS  495 (580)
Q Consensus       475 p~~l~~l~~L~~L~Ls~N~l~  495 (580)
                      |..        .++..++..+
T Consensus       391 p~~--------~~~~~~~~~~  403 (457)
T 3bz5_A          391 SPD--------LLDQFGNPMN  403 (457)
T ss_dssp             CTT--------CBCTTSCCCE
T ss_pred             Chh--------HhcccCceee
Confidence            843        3445555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.1e-35  Score=297.33  Aligned_cols=334  Identities=20%  Similarity=0.204  Sum_probs=207.7

Q ss_pred             CCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEE
Q 036717           78 LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLL  157 (580)
Q Consensus        78 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  157 (580)
                      ++++++|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            344555555555544333333444555555555555544 3333333455555555555555554444445555555555


Q ss_pred             eccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCc
Q 036717          158 YLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS  237 (580)
Q Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  237 (580)
                      ++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.+++++|.++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            5555555533333345555555555555555544455555555555666655555532   1344556666666666555


Q ss_pred             cccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccC
Q 036717          238 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCR  317 (580)
Q Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  317 (580)
                      +..    ..++|++|++++|.+... +..  ..++|+.|++++|++++.  .++..+++|++|++++|.+++..|..+..
T Consensus       200 ~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          200 TLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             EEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence            432    234677777777777643 222  236788888888888753  46788888888888888888877888888


Q ss_pred             CCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEee
Q 036717          318 LRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMT  397 (580)
Q Consensus       318 l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (580)
                      +++|+.|++++|++++ +|..+                                                          
T Consensus       271 l~~L~~L~L~~n~l~~-~~~~~----------------------------------------------------------  291 (390)
T 3o6n_A          271 MQRLERLYISNNRLVA-LNLYG----------------------------------------------------------  291 (390)
T ss_dssp             CSSCCEEECCSSCCCE-EECSS----------------------------------------------------------
T ss_pred             cccCCEEECCCCcCcc-cCccc----------------------------------------------------------
Confidence            8899999999988863 22211                                                          


Q ss_pred             ccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchh
Q 036717          398 KNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ  477 (580)
Q Consensus       398 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  477 (580)
                               ..+++|+.|++++|+++ .+|..+..+++|++|++++|.++.. +  +..+++|+.|++++|++.+.....
T Consensus       292 ---------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~  358 (390)
T 3o6n_A          292 ---------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA  358 (390)
T ss_dssp             ---------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred             ---------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH
Confidence                     01678999999999998 5677788999999999999999854 3  678899999999999998653332


Q ss_pred             hcCCCCCCEEeccCCcccccC
Q 036717          478 LTELHSLSKFDVSYNNLSGPI  498 (580)
Q Consensus       478 l~~l~~L~~L~Ls~N~l~~~~  498 (580)
                      +  +..+....+..+...|..
T Consensus       359 ~--~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          359 L--FRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             H--TTTCCTTTBCCCCSCCCT
T ss_pred             H--HHHHHhhcccccCceecc
Confidence            2  233444445555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.2e-34  Score=287.97  Aligned_cols=305  Identities=21%  Similarity=0.322  Sum_probs=188.9

Q ss_pred             cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717           77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL  156 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  156 (580)
                      .+++|++|+++++.++. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  +.+..+++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            35566666666666553 22 3555666666666666555 3333  45555666666666555431  34555555555


Q ss_pred             EeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcC
Q 036717          157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL  236 (580)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  236 (580)
                      |++++|.+++..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+                        
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~------------------------  167 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV------------------------  167 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC------------------------
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc------------------------
Confidence            5555555543222  4455555555555553332222 244444555555555444                        


Q ss_pred             ccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCccccc
Q 036717          237 SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC  316 (580)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  316 (580)
                      .+... ...+++|++|++++|.+.+..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.+++..+  +.
T Consensus       168 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          168 KDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             CCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             CCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            43332 2245555555555555553222  5566677777777777664333  6667777777777777764433  67


Q ss_pred             CCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEe
Q 036717          317 RLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFM  396 (580)
Q Consensus       317 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (580)
                      .+++|+.|++++|.+++ ++ .+.                                                        
T Consensus       241 ~l~~L~~L~l~~n~l~~-~~-~~~--------------------------------------------------------  262 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISD-IN-AVK--------------------------------------------------------  262 (347)
T ss_dssp             TCTTCCEEECCSSCCCC-CG-GGT--------------------------------------------------------
T ss_pred             cCCCCCEEECCCCccCC-Ch-hHh--------------------------------------------------------
Confidence            77788888888887753 11 111                                                        


Q ss_pred             eccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCch
Q 036717          397 TKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP  476 (580)
Q Consensus       397 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  476 (580)
                                 .+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..++++++|++|++++|++++..| 
T Consensus       263 -----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-  328 (347)
T 4fmz_A          263 -----------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-  328 (347)
T ss_dssp             -----------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred             -----------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence                       167788888888888754  458888999999999999988888888999999999999999987665 


Q ss_pred             hhcCCCCCCEEeccCCccc
Q 036717          477 QLTELHSLSKFDVSYNNLS  495 (580)
Q Consensus       477 ~l~~l~~L~~L~Ls~N~l~  495 (580)
                       +..+++|++|++++|+++
T Consensus       329 -~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 -LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -GGGCTTCSEESSSCC---
T ss_pred             -hhhhhccceeehhhhccc
Confidence             788899999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3e-34  Score=287.00  Aligned_cols=306  Identities=22%  Similarity=0.274  Sum_probs=259.7

Q ss_pred             ccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717            4 RHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY   83 (580)
Q Consensus         4 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   83 (580)
                      ..+++|++|+++++.++ .++.  +..+++|++|++++|.+++++....+++|++|++++|.++ .++.  +..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred             hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCccc-CchH--HcCCCcCCE
Confidence            46789999999999998 6765  5689999999999999998765668899999999999998 4553  457999999


Q ss_pred             EEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcc
Q 036717           84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH  163 (580)
Q Consensus        84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (580)
                      |++++|.+++. +. +..+++|++|++++|.....++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            99999999864 33 88999999999999966645554  5889999999999999875433  8889999999999999


Q ss_pred             ccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCc
Q 036717          164 FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST  243 (580)
Q Consensus       164 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  243 (580)
                      +.+..+  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +..
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~  261 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAV  261 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGG
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhH
Confidence            985433  7889999999999999986544  8889999999999999985443  88999999999999999875 333


Q ss_pred             cCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCE
Q 036717          244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGI  323 (580)
Q Consensus       244 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  323 (580)
                      ..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|  +..+++|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence            4889999999999999854  468889999999999999998888999999999999999999997666  888999999


Q ss_pred             EEeeCCeec
Q 036717          324 MDLSHNRLY  332 (580)
Q Consensus       324 L~l~~n~l~  332 (580)
                      |++++|+++
T Consensus       338 L~l~~N~i~  346 (347)
T 4fmz_A          338 ADFANQVIK  346 (347)
T ss_dssp             ESSSCC---
T ss_pred             eehhhhccc
Confidence            999999885

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.8e-35  Score=289.19  Aligned_cols=259  Identities=34%  Similarity=0.556  Sum_probs=208.8

Q ss_pred             CCCCEEEcccCCCCC--CCchhhhcCCCCCEEEccc-CcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEE
Q 036717          176 TELMVLDISNNRLSG--HIPSWMGNFSYLQILSMSK-NLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHL  252 (580)
Q Consensus       176 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  252 (580)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..|.                       .+++|++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-----------------------~l~~L~~L  106 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-----------------------KLTQLHYL  106 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-----------------------GCTTCSEE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-----------------------cCCCCCEE
Confidence            345555555555555  4555555555555555553 555444444444                       45566666


Q ss_pred             EeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCC-CCCEEEeeCCee
Q 036717          253 YLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLR-KLGIMDLSHNRL  331 (580)
Q Consensus       253 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l  331 (580)
                      ++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|++
T Consensus       107 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            6666666667777778888888888888888888888888888888888888888888888888887 899999999999


Q ss_pred             cCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccc
Q 036717          332 YGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEH  411 (580)
Q Consensus       332 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  411 (580)
                      ++.+|..+..                                                                   +. 
T Consensus       187 ~~~~~~~~~~-------------------------------------------------------------------l~-  198 (313)
T 1ogq_A          187 TGKIPPTFAN-------------------------------------------------------------------LN-  198 (313)
T ss_dssp             EEECCGGGGG-------------------------------------------------------------------CC-
T ss_pred             eccCChHHhC-------------------------------------------------------------------Cc-
Confidence            8888776543                                                                   33 


Q ss_pred             ccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccC
Q 036717          412 MAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY  491 (580)
Q Consensus       412 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  491 (580)
                      |+.|++++|.+++.+|..|..+++|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            88899999999999999999999999999999999977766 88899999999999999999999999999999999999


Q ss_pred             CcccccCCCCcccCCcCccccCCCCCCCCCCCCCCC
Q 036717          492 NNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC  527 (580)
Q Consensus       492 N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C  527 (580)
                      |++++.+|....+..+....+.+|+.+||.|.. .|
T Consensus       278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            999999999888889999999999999998765 56

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1e-36  Score=317.46  Aligned_cols=379  Identities=19%  Similarity=0.155  Sum_probs=239.9

Q ss_pred             CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCcc----ccchhhhcCCCCCEEEcccCcCccccchHHHhCCC-
Q 036717           54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEG----NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCF-  128 (580)
Q Consensus        54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-  128 (580)
                      ++|++||+++|+++......++..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5678888888888744444445678899999999998874    34667788899999999999887555555656666 


Q ss_pred             ---CCcEEEcccccCCC----cCCccccCCCCCCEEeccCccccccccccc-----cCCCCCCEEEcccCCCCCCC----
Q 036717          129 ---SLIWLDLSNNNFDG----QIFPNYMNLTQLQLLYLDNNHFSGKIKDGL-----LRSTELMVLDISNNRLSGHI----  192 (580)
Q Consensus       129 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~----  192 (580)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68899998888874    346677888888888888888775433332     23567888888888877533    


Q ss_pred             chhhhcCCCCCEEEcccCcCCCcCchhcc-----CCCCCcEEEccCCcCcccc----CCcc-CCCCCcEEEeeCCcCccc
Q 036717          193 PSWMGNFSYLQILSMSKNLLEGNIPVQFN-----DLLDLEILNISENNLSGSM----ISTL-NLSSVEHLYLQNNALGGS  262 (580)
Q Consensus       193 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~~~~-~~~~L~~L~l~~n~l~~~  262 (580)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++..    +..+ .+++|++|++++|.+++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            45566678888888888877644333332     2457777777777776532    1111 556777777777766543


Q ss_pred             C-----ChhccCCCCccEEeCCCCcCccc----CchhhccCcCcceeecccccccccCcccccC-----CCCCCEEEeeC
Q 036717          263 I-----PNTFFRGSALETLDLRDNNFSGR----IPHQINEHSNLRALLLRANYLQGPIPHQLCR-----LRKLGIMDLSH  328 (580)
Q Consensus       263 ~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~  328 (580)
                      .     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            2     22223456777777777776643    4555556667777777777665443333322     24677777777


Q ss_pred             CeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccc
Q 036717          329 NRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI  408 (580)
Q Consensus       329 n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (580)
                      |.+++.....+....                                                               ..
T Consensus       323 n~l~~~~~~~l~~~l---------------------------------------------------------------~~  339 (461)
T 1z7x_W          323 CSFTAACCSHFSSVL---------------------------------------------------------------AQ  339 (461)
T ss_dssp             SCCBGGGHHHHHHHH---------------------------------------------------------------HH
T ss_pred             CCCchHHHHHHHHHH---------------------------------------------------------------hh
Confidence            766543211111100                                                               00


Q ss_pred             cccccEEEccCCcceeeCCccccc-----ccCCCeEecccCccee----cccccccCcccCCEEECCCCcccccCchhhc
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGD-----LQNIHGLNLSYNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLT  479 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  479 (580)
                      +++|+.|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|+|++|++++.....+.
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~  419 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV  419 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHH
Confidence            456677777777766554444432     4567777777777764    5666666667777777777776643222211


Q ss_pred             -----CCCCCCEEeccCCccc
Q 036717          480 -----ELHSLSKFDVSYNNLS  495 (580)
Q Consensus       480 -----~l~~L~~L~Ls~N~l~  495 (580)
                           ....|+.|++.++.+.
T Consensus       420 ~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          420 ESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHTSTTCCCCEEECTTCCCC
T ss_pred             HHhccCCcchhheeecccccC
Confidence                 1234666666655544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-33  Score=302.85  Aligned_cols=313  Identities=20%  Similarity=0.200  Sum_probs=196.7

Q ss_pred             CCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEE
Q 036717           78 LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLL  157 (580)
Q Consensus        78 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  157 (580)
                      +++++.+++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            345555555555555444444455555555555555554 2333233455555555555555555444455555555555


Q ss_pred             eccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCc
Q 036717          158 YLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS  237 (580)
Q Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  237 (580)
                      ++++|.+++..+..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..   +..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            55555555443334455555555555555555555555555555666666665555331   334555666666666555


Q ss_pred             cccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccC
Q 036717          238 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCR  317 (580)
Q Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  317 (580)
                      +..    ..++|+.|++++|.+....+. +  .++|+.|++++|.+++  +.++..+++|+.|++++|.+++..|..+..
T Consensus       206 ~l~----~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          206 TLA----IPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             EEE----CCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ccc----CCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            432    234567777777766533222 1  2577888888888775  356777888888888888888777888888


Q ss_pred             CCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEee
Q 036717          318 LRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMT  397 (580)
Q Consensus       318 l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (580)
                      +++|+.|++++|.+++ +|..+.                                                         
T Consensus       277 l~~L~~L~Ls~N~l~~-l~~~~~---------------------------------------------------------  298 (597)
T 3oja_B          277 MQRLERLYISNNRLVA-LNLYGQ---------------------------------------------------------  298 (597)
T ss_dssp             CSSCCEEECTTSCCCE-EECSSS---------------------------------------------------------
T ss_pred             ccCCCEEECCCCCCCC-CCcccc---------------------------------------------------------
Confidence            8888888888888763 222111                                                         


Q ss_pred             ccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717          398 KNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  475 (580)
Q Consensus       398 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  475 (580)
                                .+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. |  +..+++|+.|+|++|.+.+...
T Consensus       299 ----------~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          299 ----------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             ----------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             ----------cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence                      1678888999999888 6777788899999999999998854 3  6677889999999999886543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.3e-34  Score=279.07  Aligned_cols=252  Identities=26%  Similarity=0.414  Sum_probs=172.2

Q ss_pred             CCCCEEeccCccccc--cccccccCCCCCCEEEccc-CCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717          152 TQLQLLYLDNNHFSG--KIKDGLLRSTELMVLDISN-NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI  228 (580)
Q Consensus       152 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  228 (580)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..|+.+++|++|++++|.+++.+|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            589999999999998  8899999999999999995 9999899999999999999999999999888888888888888


Q ss_pred             EEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccc
Q 036717          229 LNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL  307 (580)
Q Consensus       229 L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  307 (580)
                      |++++|.+++..+..+ .+++|++|++++|.+++.+|..+..++                       ++|+.|++++|.+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----------------------~~L~~L~L~~N~l  186 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-----------------------KLFTSMTISRNRL  186 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-----------------------TTCCEEECCSSEE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-----------------------hcCcEEECcCCee
Confidence            8887777665443333 445555555555555444444444444                       0444444444444


Q ss_pred             cccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhh
Q 036717          308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWL  387 (580)
Q Consensus       308 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (580)
                      ++.+|..+..++ |+.|++++|.+++..|..+..                                              
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------------------------------------  219 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------------------------------------  219 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------------------------
Confidence            444444444444 555555555554443332221                                              


Q ss_pred             ccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCC
Q 036717          388 VKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH  467 (580)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  467 (580)
                                           +++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..|..+++|++|+|++
T Consensus       220 ---------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          220 ---------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             ---------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ---------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence                                 44555555555555544444 55666777777777777766777777777777777777


Q ss_pred             CcccccCchhhcCCCCCCEEeccCCcccc
Q 036717          468 NKLNGQIPPQLTELHSLSKFDVSYNNLSG  496 (580)
Q Consensus       468 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  496 (580)
                      |++++.+|.. ..+++|+.+++++|+.-|
T Consensus       278 N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          278 NNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             SEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             CcccccCCCC-ccccccChHHhcCCCCcc
Confidence            7777666665 666777777777776443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=5.3e-36  Score=311.99  Aligned_cols=392  Identities=16%  Similarity=0.138  Sum_probs=255.8

Q ss_pred             CCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCC------CCCCCCccEEEccCCCCCccCChhHhhcCC
Q 036717            6 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQL------TGAQHGLLSLDISKNSFTGELPQNMGIVLQ   79 (580)
Q Consensus         6 ~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~   79 (580)
                      .++|++|++++|++++.....++..+++|++|++++|.+++...      ...+++|++|++++|.+.+..+..++..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            36789999999999855555557789999999999999885311      125688999999999887555555655566


Q ss_pred             ----CCcEEEcccCcCcc----ccchhhhcCCCCCEEEcccCcCccccchHHH----hCCCCCcEEEcccccCCCcC---
Q 036717           80 ----KLVYMNISKNSFEG----NIPSSIAKMQGLRFLDVSTNNFAGELSQSLV----TNCFSLIWLDLSNNNFDGQI---  144 (580)
Q Consensus        80 ----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~---  144 (580)
                          +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.    ...++|++|++++|.+++..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                68999999988874    4577888888899999988887744333332    22446777777777766432   


Q ss_pred             -CccccCCCCCCEEeccCcccccccccccc-----CCCCCCEEEcccCCCCCC----CchhhhcCCCCCEEEcccCcCCC
Q 036717          145 -FPNYMNLTQLQLLYLDNNHFSGKIKDGLL-----RSTELMVLDISNNRLSGH----IPSWMGNFSYLQILSMSKNLLEG  214 (580)
Q Consensus       145 -~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~  214 (580)
                       +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             33344556666666666665543332221     234555555555555432    23344444555555555554432


Q ss_pred             cCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCccc----CChhccCCCCccEEeCCCCcCcccCch
Q 036717          215 NIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGS----IPNTFFRGSALETLDLRDNNFSGRIPH  289 (580)
Q Consensus       215 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~  289 (580)
                      .....+.                   +... .+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+.
T Consensus       242 ~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          242 VGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            1110000                   1111 345666666666666643    455666677888888888887655444


Q ss_pred             hhcc-----CcCcceeeccccccccc----CcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCC
Q 036717          290 QINE-----HSNLRALLLRANYLQGP----IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA  360 (580)
Q Consensus       290 ~~~~-----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~  360 (580)
                      .+..     .++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+.....                
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~----------------  366 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG----------------  366 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT----------------
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc----------------
Confidence            4432     25888888888888755    4566777889999999999887655544433100                


Q ss_pred             CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCccee----eCCcccccccCC
Q 036717          361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG----NIPSEIGDLQNI  436 (580)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L  436 (580)
                                                                    ...++|+.|++++|.+++    .+|..+..+++|
T Consensus       367 ----------------------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          367 ----------------------------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             ----------------------------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             ----------------------------------------------CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence                                                          004688999999999986    778888899999


Q ss_pred             CeEecccCcceeccccccc-----CcccCCEEECCCCcccccCchhh
Q 036717          437 HGLNLSYNFLSGSIPESFS-----NLKMIESLDLSHNKLNGQIPPQL  478 (580)
Q Consensus       437 ~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~~l  478 (580)
                      ++|++++|++++.....+.     ...+|+.|++.++......++.+
T Consensus       401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l  447 (461)
T 1z7x_W          401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  447 (461)
T ss_dssp             CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence            9999999999864222222     23468888888887765544443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=2.3e-32  Score=271.28  Aligned_cols=290  Identities=23%  Similarity=0.285  Sum_probs=176.9

Q ss_pred             CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEc
Q 036717          104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI  183 (580)
Q Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  183 (580)
                      +++.++++++.++ .+|..+   .++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5777777777776 666543   356777777777777666666777777777777777777666667777777777777


Q ss_pred             ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccC
Q 036717          184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI  263 (580)
Q Consensus       184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  263 (580)
                      ++|.+. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.++..                     +..
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~  165 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------------------GFE  165 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------------------GSC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC---------------------CCC
Confidence            777776 3343332  5677777777776655555566666666666666666431                     122


Q ss_pred             ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhc
Q 036717          264 PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL  343 (580)
Q Consensus       264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~  343 (580)
                      +..+..+ +|+.|++++|++++ +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..  
T Consensus       166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--  239 (332)
T 2ft3_A          166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--  239 (332)
T ss_dssp             TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--
T ss_pred             cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--
Confidence            3333333 44555555555442 332222  45555555555555555555555566666666666555433322221  


Q ss_pred             ccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce
Q 036717          344 FWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT  423 (580)
Q Consensus       344 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  423 (580)
                                                                                       +++|+.|++++|+++
T Consensus       240 -----------------------------------------------------------------l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          240 -----------------------------------------------------------------LPTLRELHLDNNKLS  254 (332)
T ss_dssp             -----------------------------------------------------------------CTTCCEEECCSSCCC
T ss_pred             -----------------------------------------------------------------CCCCCEEECCCCcCe
Confidence                                                                             456666666666666


Q ss_pred             eeCCcccccccCCCeEecccCcceecccccccCc------ccCCEEECCCCccc--ccCchhhcCCCCCCEEeccCCc
Q 036717          424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNL------KMIESLDLSHNKLN--GQIPPQLTELHSLSKFDVSYNN  493 (580)
Q Consensus       424 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~  493 (580)
                       .+|..+..+++|++|++++|.+++..+..|...      ..|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       255 -~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             556666777777777777777776555555543      56777778777776  5666777777778888777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.6e-32  Score=272.47  Aligned_cols=298  Identities=18%  Similarity=0.182  Sum_probs=243.1

Q ss_pred             cCchHHhhCCC-----CCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccc
Q 036717           22 NFPTWLLENNT-----KLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP   96 (580)
Q Consensus        22 ~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   96 (580)
                      .+|..+...|+     +++.++++++.++.++ ....++|++|++++|.+. .++...+..+++|++|++++|++++..|
T Consensus        18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip-~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~   95 (332)
T 2ft3_A           18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVP-KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHE   95 (332)
T ss_dssp             -------CCCCSSCEEETTEEECCSSCCSSCC-SCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred             cCCCcccCCCCCCCcccCCEEECCCCCccccC-CCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCH
Confidence            55655444443     7999999999988753 234578999999999998 4554444689999999999999998889


Q ss_pred             hhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccc--cccccccC
Q 036717           97 SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG--KIKDGLLR  174 (580)
Q Consensus        97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~  174 (580)
                      .+|+++++|++|++++|.++ .+|..++   ++|++|++++|.+....+..|..+++|++|++++|.++.  ..+..+..
T Consensus        96 ~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  171 (332)
T 2ft3_A           96 KAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG  171 (332)
T ss_dssp             GGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred             hHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence            99999999999999999998 7777553   789999999999997777778999999999999999863  56777777


Q ss_pred             CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEE
Q 036717          175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLY  253 (580)
Q Consensus       175 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~  253 (580)
                      + +|++|++++|.+++ +|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|+
T Consensus       172 l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  247 (332)
T 2ft3_A          172 L-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH  247 (332)
T ss_dssp             C-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             C-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence            7 99999999999985 554443  789999999999998888889999999999999999998877655 789999999


Q ss_pred             eeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc------CcCcceeeccccccc--ccCcccccCCCCCCEEE
Q 036717          254 LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE------HSNLRALLLRANYLQ--GPIPHQLCRLRKLGIMD  325 (580)
Q Consensus       254 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~  325 (580)
                      +++|.++ .+|..+..+++|+.|++++|++++..+..+..      .+.|+.|++++|.+.  +..|..|..+++|+.++
T Consensus       248 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             CCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred             CCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence            9999998 77888999999999999999999776666654      367899999999887  66778888899999999


Q ss_pred             eeCCe
Q 036717          326 LSHNR  330 (580)
Q Consensus       326 l~~n~  330 (580)
                      +++|+
T Consensus       327 l~~n~  331 (332)
T 2ft3_A          327 FGNYK  331 (332)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            98875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=8.3e-32  Score=267.16  Aligned_cols=289  Identities=19%  Similarity=0.204  Sum_probs=233.3

Q ss_pred             CCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcc
Q 036717           32 TKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVS  111 (580)
Q Consensus        32 ~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  111 (580)
                      .+++.++++++.++.++ ....+.+++|++++|.++ .++...+..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp-~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVP-KDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCC-CSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccC-ccCCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            37888999888888653 234578899999999988 5555445678999999999999988778899999999999999


Q ss_pred             cCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccc--cccccccCCCCCCEEEcccCCCC
Q 036717          112 TNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSG--KIKDGLLRSTELMVLDISNNRLS  189 (580)
Q Consensus       112 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~  189 (580)
                      +|.++ .+|..++   ++|++|++++|.+++..+..|.++++|++|++++|.+..  ..+..+..+++|++|++++|.+.
T Consensus       109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99888 7776543   789999999999987777778889999999999998863  56777888999999999999888


Q ss_pred             CCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhcc
Q 036717          190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFF  268 (580)
Q Consensus       190 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~  268 (580)
                      . +|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.++ .+|..+.
T Consensus       185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence            4 454433  789999999999988778889999999999999999988777555 7889999999999988 6777888


Q ss_pred             CCCCccEEeCCCCcCcccCchhhcc------CcCcceeecccccccc--cCcccccCCCCCCEEEeeCCe
Q 036717          269 RGSALETLDLRDNNFSGRIPHQINE------HSNLRALLLRANYLQG--PIPHQLCRLRKLGIMDLSHNR  330 (580)
Q Consensus       269 ~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  330 (580)
                      .+++|++|++++|++++..+..|..      .+.++.+++++|.+..  ..|..|..+..++.+++++|+
T Consensus       261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            8899999999999998766666643      3678889999998763  556778888889999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.1e-31  Score=266.14  Aligned_cols=291  Identities=23%  Similarity=0.270  Sum_probs=169.3

Q ss_pred             CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEc
Q 036717          104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI  183 (580)
Q Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  183 (580)
                      +++.++++++.++ .+|..+   .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            5777777777776 566533   256777777777777665556777777777777777777666667777777777777


Q ss_pred             ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccC
Q 036717          184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI  263 (580)
Q Consensus       184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  263 (580)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+...                     +..
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~  163 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE  163 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcC
Confidence            777766 3343332  5677777777766655555666666666666666665431                     122


Q ss_pred             ChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhc
Q 036717          264 PNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSL  343 (580)
Q Consensus       264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~  343 (580)
                      +..+..+++|++|++++|.++. +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..  
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--  238 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--  238 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--
T ss_pred             hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--
Confidence            3334444444444444444442 222221  44555555555555444455555555555555555554332222211  


Q ss_pred             ccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcce
Q 036717          344 FWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT  423 (580)
Q Consensus       344 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  423 (580)
                                                                                       +++|+.|++++|+++
T Consensus       239 -----------------------------------------------------------------l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          239 -----------------------------------------------------------------TPHLRELHLNNNKLV  253 (330)
T ss_dssp             -----------------------------------------------------------------STTCCEEECCSSCCS
T ss_pred             -----------------------------------------------------------------CCCCCEEECCCCcCc
Confidence                                                                             445566666666665


Q ss_pred             eeCCcccccccCCCeEecccCcceecccccccC------cccCCEEECCCCcccc--cCchhhcCCCCCCEEeccCCc
Q 036717          424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSN------LKMIESLDLSHNKLNG--QIPPQLTELHSLSKFDVSYNN  493 (580)
Q Consensus       424 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~  493 (580)
                       .+|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|.+..  ..|..|..+++++.++|++|+
T Consensus       254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence             55555666666666666666666555555533      2566777777777653  455667777777777777764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=8.7e-33  Score=297.08  Aligned_cols=380  Identities=15%  Similarity=0.057  Sum_probs=203.9

Q ss_pred             CCCCccEEEccCCCCCccCChhHhhcCCC-CcEEEcccCc-Ccc-ccchhhhcCCCCCEEEcccCcCcccc---chHHHh
Q 036717           52 AQHGLLSLDISKNSFTGELPQNMGIVLQK-LVYMNISKNS-FEG-NIPSSIAKMQGLRFLDVSTNNFAGEL---SQSLVT  125 (580)
Q Consensus        52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~  125 (580)
                      .+++|++|+|++|.+++..+..+...+++ |++|++++|. ++. .++.....+++|++|++++|.+++.-   ...+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            45666667776666654444444332344 6677776664 111 11222335666777777666655331   112335


Q ss_pred             CCCCCcEEEcccccCCC----cCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC---CCCchhhhc
Q 036717          126 NCFSLIWLDLSNNNFDG----QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS---GHIPSWMGN  198 (580)
Q Consensus       126 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~  198 (580)
                      .+++|++|++++|.+++    ..+..+..+++|++|++++|.+.+ ++..+..+++|++|+++.....   ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            56667777776666652    222233456667777776666653 4455666666777766643222   122334555


Q ss_pred             CCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCc--cCCCCCcEEEeeCCcCcccCChhccCCCCccEE
Q 036717          199 FSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST--LNLSSVEHLYLQNNALGGSIPNTFFRGSALETL  276 (580)
Q Consensus       199 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  276 (580)
                      +++|+.|+++++... .++..+..+++|++|++++|.+++.....  ..+++|++|+++++...+.++.....+++|++|
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            666677766664332 45555666667777777766655433321  256677777776332222233333456667777


Q ss_pred             eCCC-----------CcCccc-CchhhccCcCcceeecccccccccCcccccC-CCCCCEEEee----CCeecCccCh-h
Q 036717          277 DLRD-----------NNFSGR-IPHQINEHSNLRALLLRANYLQGPIPHQLCR-LRKLGIMDLS----HNRLYGSIPA-C  338 (580)
Q Consensus       277 ~l~~-----------n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~p~-~  338 (580)
                      ++++           +.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++...+ .
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            7772           445433 2222345667777777666666555555544 6677777775    4455432110 0


Q ss_pred             hhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEcc
Q 036717          339 ITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS  418 (580)
Q Consensus       339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  418 (580)
                      +....                                                               ..+++|+.|+++
T Consensus       428 ~~~~~---------------------------------------------------------------~~~~~L~~L~L~  444 (592)
T 3ogk_B          428 VRSLL---------------------------------------------------------------IGCKKLRRFAFY  444 (592)
T ss_dssp             HHHHH---------------------------------------------------------------HHCTTCCEEEEE
T ss_pred             HHHHH---------------------------------------------------------------HhCCCCCEEEEe
Confidence            10000                                                               014566666665


Q ss_pred             CCc--ceeeCCcccc-cccCCCeEecccCccee-cccccccCcccCCEEECCCCccccc-CchhhcCCCCCCEEeccCCc
Q 036717          419 SNE--LTGNIPSEIG-DLQNIHGLNLSYNFLSG-SIPESFSNLKMIESLDLSHNKLNGQ-IPPQLTELHSLSKFDVSYNN  493 (580)
Q Consensus       419 ~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~  493 (580)
                      +|.  +++..+..+. .+++|++|++++|.+++ .++..+.++++|++|+|++|.+++. ++..+..+++|++|++++|+
T Consensus       445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            432  4444343333 25666666666666654 2344445666666666666666543 33334556666666666666


Q ss_pred             ccc
Q 036717          494 LSG  496 (580)
Q Consensus       494 l~~  496 (580)
                      ++.
T Consensus       525 it~  527 (592)
T 3ogk_B          525 ASM  527 (592)
T ss_dssp             CCT
T ss_pred             CCH
Confidence            553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2.7e-32  Score=293.25  Aligned_cols=421  Identities=15%  Similarity=0.116  Sum_probs=309.6

Q ss_pred             cccCCCCCEEECCCCCCc---ccCc-----------hHHhhCCCCCcEEEccCCcccCCCCCC---CCCC-ccEEEccCC
Q 036717            3 LRHQFNLKYLDLSHNKLA---GNFP-----------TWLLENNTKLEVLYLINNSFSGFQLTG---AQHG-LLSLDISKN   64 (580)
Q Consensus         3 l~~~~~L~~L~Ls~n~i~---~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~-L~~L~L~~n   64 (580)
                      +..+++|+.|+++++...   +.+|           ..++..+++|++|+|++|.+++.....   .++. |++|++++|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence            457899999999875321   1121           233447999999999999877542221   2334 999999998


Q ss_pred             C-CCccCChhHhhcCCCCcEEEcccCcCccc----cchhhhcCCCCCEEEcccCcCcc----ccchHHHhCCCCCcEEEc
Q 036717           65 S-FTGELPQNMGIVLQKLVYMNISKNSFEGN----IPSSIAKMQGLRFLDVSTNNFAG----ELSQSLVTNCFSLIWLDL  135 (580)
Q Consensus        65 ~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L  135 (580)
                      . ++......+...+++|++|++++|.+++.    ++.....+++|++|++++|.+++    .++ .++.++++|++|++
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L  227 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKV  227 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEEC
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEec
Confidence            7 22111223334799999999999998766    44566789999999999998862    222 34578999999999


Q ss_pred             ccccCCCcCCccccCCCCCCEEeccCcccc---ccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcC
Q 036717          136 SNNNFDGQIFPNYMNLTQLQLLYLDNNHFS---GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL  212 (580)
Q Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  212 (580)
                      ++|.+.+ .+..+..+++|++|+++.....   ...+..+..+++|+.++++++... .+|..+..+++|++|++++|.+
T Consensus       228 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          228 GDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             SSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCC
T ss_pred             cCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcC
Confidence            9999875 5677889999999999864322   234456778899999999986444 6788888999999999999997


Q ss_pred             CCcCc-hhccCCCCCcEEEccCCcCccccCCcc--CCCCCcEEEeeC-----------CcCcccC-ChhccCCCCccEEe
Q 036717          213 EGNIP-VQFNDLLDLEILNISENNLSGSMISTL--NLSSVEHLYLQN-----------NALGGSI-PNTFFRGSALETLD  277 (580)
Q Consensus       213 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~-----------n~l~~~~-~~~~~~~~~L~~L~  277 (580)
                      ++... ..+..+++|++|+++ +.+.......+  .+++|++|++++           +.+++.. +.....+++|++|+
T Consensus       306 ~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~  384 (592)
T 3ogk_B          306 ETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA  384 (592)
T ss_dssp             CHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred             CHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence            64433 446889999999999 44443322222  688999999993           5665432 22345689999999


Q ss_pred             CCCCcCcccCchhhcc-CcCcceeecc----ccccccc-----CcccccCCCCCCEEEeeCCe--ecCccChhhhhhccc
Q 036717          278 LRDNNFSGRIPHQINE-HSNLRALLLR----ANYLQGP-----IPHQLCRLRKLGIMDLSHNR--LYGSIPACITNSLFW  345 (580)
Q Consensus       278 l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~~~~~  345 (580)
                      ++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|+.|++++|.  +++..+..+..    
T Consensus       385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~----  460 (592)
T 3ogk_B          385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ----  460 (592)
T ss_dssp             EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----
T ss_pred             eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----
Confidence            9999999877777765 8999999996    6677753     34446779999999998654  44333322221    


Q ss_pred             ccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCccee-
Q 036717          346 KVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTG-  424 (580)
Q Consensus       346 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-  424 (580)
                                                                                    .+++|+.|++++|++++ 
T Consensus       461 --------------------------------------------------------------~~~~L~~L~L~~n~l~~~  478 (592)
T 3ogk_B          461 --------------------------------------------------------------YSPNVRWMLLGYVGESDE  478 (592)
T ss_dssp             --------------------------------------------------------------SCTTCCEEEECSCCSSHH
T ss_pred             --------------------------------------------------------------hCccceEeeccCCCCCHH
Confidence                                                                          16789999999999986 


Q ss_pred             eCCcccccccCCCeEecccCcceec-ccccccCcccCCEEECCCCcccccCchhh-cCCCCCCEEeccCCc
Q 036717          425 NIPSEIGDLQNIHGLNLSYNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSKFDVSYNN  493 (580)
Q Consensus       425 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~  493 (580)
                      .++..+..+++|++|++++|.+++. ++..+..+++|++|+|++|++++.-...+ ..++.+....+..++
T Consensus       479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~  549 (592)
T 3ogk_B          479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR  549 (592)
T ss_dssp             HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred             HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence            3455568899999999999998754 44555688999999999999986644333 456777766666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.8e-30  Score=254.71  Aligned_cols=232  Identities=22%  Similarity=0.239  Sum_probs=171.0

Q ss_pred             CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcccc---CCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEe
Q 036717          201 YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM---ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLD  277 (580)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  277 (580)
                      ++++|++++|.++...+..|..+++|++|++++|.++...   .....+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence            4444444444444333333444555555555555444321   11224556666666666665 3455566777788888


Q ss_pred             CCCCcCcccCc-hhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecC-ccChhhhhhcccccCCCCcccc
Q 036717          278 LRDNNFSGRIP-HQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG-SIPACITNSLFWKVGNESLYQL  355 (580)
Q Consensus       278 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~~~~~~~~~~~l  355 (580)
                      +++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..              
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------  173 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------------  173 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------------
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh--------------
Confidence            88887775444 467778888888888888887777788888888889988888865 34433222              


Q ss_pred             ccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccC
Q 036717          356 DEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQN  435 (580)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  435 (580)
                                                                           +++|+.|++++|++++..|..|..+++
T Consensus       174 -----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          174 -----------------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             -----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             -----------------------------------------------------CcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence                                                                 678999999999999888999999999


Q ss_pred             CCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCC-CCCEEeccCCcccccCCC
Q 036717          436 IHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       436 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~  500 (580)
                      |++|++++|.+++..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|+++|.++.
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            99999999999988888899999999999999999999999999985 899999999999998764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=4.7e-30  Score=256.97  Aligned_cols=288  Identities=18%  Similarity=0.163  Sum_probs=165.6

Q ss_pred             CCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEE
Q 036717          102 MQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVL  181 (580)
Q Consensus       102 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  181 (580)
                      ++.....+++++.++ .+|..+   .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444455666666666 566533   2456666666666665444455666666666666666655555555555555555


Q ss_pred             EcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCc-hhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCC-cC
Q 036717          182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIP-VQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNN-AL  259 (580)
Q Consensus       182 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n-~l  259 (580)
                      ++++|.+++..+..|..+++|++|++++|.+++..+ ..|.                       .+++|++|++++| .+
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~-----------------------~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS-----------------------HLTKLQILRVGNMDTF  162 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT-----------------------TCTTCCEEEEEESSSC
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc-----------------------cCCCCcEEECCCCccc
Confidence            555555554333345555555555555555542222 2333                       4445555555555 24


Q ss_pred             cccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhh
Q 036717          260 GGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACI  339 (580)
Q Consensus       260 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~  339 (580)
                      .+..+..+..+++|++|++++|++++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  242 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL  242 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence            43444556666666666666666666556666666666666666666653333333446667777777776653222111


Q ss_pred             hhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccC
Q 036717          340 TNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSS  419 (580)
Q Consensus       340 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  419 (580)
                      ..                                                                              
T Consensus       243 ~~------------------------------------------------------------------------------  244 (353)
T 2z80_A          243 ST------------------------------------------------------------------------------  244 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             CcceeeCCcccccccCCCeEecccCccee----cccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCccc
Q 036717          420 NELTGNIPSEIGDLQNIHGLNLSYNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS  495 (580)
Q Consensus       420 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  495 (580)
                                ....+.++.++++++.+++    .+|..+.++++|++|+|++|+++...+..|..+++|++|++++|+++
T Consensus       245 ----------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          245 ----------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             ------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ----------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence                      0112233444444444433    46777888888999999999988444444688899999999999999


Q ss_pred             ccCCCCccc
Q 036717          496 GPIPDKEQF  504 (580)
Q Consensus       496 ~~~p~~~~~  504 (580)
                      |.+|...++
T Consensus       315 ~~~~~l~~l  323 (353)
T 2z80_A          315 CSCPRIDYL  323 (353)
T ss_dssp             CCHHHHHHH
T ss_pred             CcCCCcHHH
Confidence            888754333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=9.6e-30  Score=254.72  Aligned_cols=284  Identities=21%  Similarity=0.201  Sum_probs=167.9

Q ss_pred             CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEE
Q 036717           30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLD  109 (580)
Q Consensus        30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  109 (580)
                      .|+.....+++++.++.++ ....++|++|++++|.++ .++...+..+++|++|++++|++++..|..|+++++|++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP-~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIP-SGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             EECTTSEEECCSTTCSSCC-TTCCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCeEeeCCCCCccccc-ccccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            3455555666666666542 123346666666666666 34443334566666666666666655556666666666666


Q ss_pred             cccCcCccccchHHHhCCCCCcEEEcccccCCCcCC-ccccCCCCCCEEeccCc-cccccccccccCCCCCCEEEcccCC
Q 036717          110 VSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNN-HFSGKIKDGLLRSTELMVLDISNNR  187 (580)
Q Consensus       110 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~  187 (580)
                      +++|.++ .++...+.++++|++|++++|+++.... ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.
T Consensus       107 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            6666666 4555555666666666666666654333 34556666666666666 3444444555566666666666666


Q ss_pred             CCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhc
Q 036717          188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTF  267 (580)
Q Consensus       188 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  267 (580)
                      +.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++.....+.                    ..
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~  245 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--------------------TG  245 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------------------cc
Confidence            6555555555566666666666655432222233355555555555555443322110                    01


Q ss_pred             cCCCCccEEeCCCCcCcc----cCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccC
Q 036717          268 FRGSALETLDLRDNNFSG----RIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIP  336 (580)
Q Consensus       268 ~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  336 (580)
                      .....++.++++++.+++    .+|.++..+++|+.|++++|.++...+..|..+++|+.|++++|++.+..|
T Consensus       246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            123456666666666654    356777888888888888888884433445788889999999999887665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.2e-28  Score=254.23  Aligned_cols=231  Identities=25%  Similarity=0.272  Sum_probs=164.5

Q ss_pred             CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCC
Q 036717          201 YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR  279 (580)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  279 (580)
                      +++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44444444444444444444445555555555555444443333 44555555555555554444456666666666666


Q ss_pred             CCcCcccCchhhccCcCcceeecccc-cccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccC
Q 036717          280 DNNFSGRIPHQINEHSNLRALLLRAN-YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE  358 (580)
Q Consensus       280 ~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~  358 (580)
                      +|+++...+..+..+++|+.|++++| .+....+..|..+++|+.|++++|.++ .+|. +.                  
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~------------------  204 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT------------------  204 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CT------------------
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cC------------------
Confidence            66666555556666667777777663 344334446777788888888888775 3331 10                  


Q ss_pred             CCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCe
Q 036717          359 GADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHG  438 (580)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  438 (580)
                                                                       .+++|+.|+|++|.+++..|..|.++++|+.
T Consensus       205 -------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          205 -------------------------------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQK  235 (440)
T ss_dssp             -------------------------------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             -------------------------------------------------CCcccCEEECCCCccCccChhhhccCccCCE
Confidence                                                             1678999999999999999999999999999


Q ss_pred             EecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          439 LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       439 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      |+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++.|.|..
T Consensus       236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            99999999999999999999999999999999988888899999999999999999998864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.5e-29  Score=244.75  Aligned_cols=228  Identities=23%  Similarity=0.291  Sum_probs=103.3

Q ss_pred             CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccc--cchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717           54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGN--IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI  131 (580)
Q Consensus        54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  131 (580)
                      ++|++|++++|.++ .+|..++..+++|++|++++|.++..  .+..+..+++|++|++++|.+. .++.. +..+++|+
T Consensus        28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEE-EETCTTCC
T ss_pred             CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhh-cCCCCCCC
Confidence            34444555544444 44444434455555555555554421  1344444555555555555544 33333 23445555


Q ss_pred             EEEcccccCCCcCC-ccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCC-CCchhhhcCCCCCEEEccc
Q 036717          132 WLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSG-HIPSWMGNFSYLQILSMSK  209 (580)
Q Consensus       132 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~  209 (580)
                      +|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            55555554443322 234444455555555544444444444444444444444444443 2334444444444444444


Q ss_pred             CcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCC-CccEEeCCCCcCc
Q 036717          210 NLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGS-ALETLDLRDNNFS  284 (580)
Q Consensus       210 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~  284 (580)
                      |.+++..+..|..+++|++|++++|.+++.++..+ .+++|++|++++|.+++..+..+..++ +|+.|++++|.++
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            44444444444444444444444444444333222 334444444444444444444444432 4444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.6e-28  Score=254.36  Aligned_cols=231  Identities=21%  Similarity=0.205  Sum_probs=167.4

Q ss_pred             CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCC
Q 036717          201 YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR  279 (580)
Q Consensus       201 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  279 (580)
                      +++.|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            45555555555554444555555555555555555555444433 45555566666666554445556666666777777


Q ss_pred             CCcCcccCchhhccCcCcceeecccc-cccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccC
Q 036717          280 DNNFSGRIPHQINEHSNLRALLLRAN-YLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEE  358 (580)
Q Consensus       280 ~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~  358 (580)
                      +|+++...+..+..+++|+.|++++| .+....+..|..+++|+.|++++|.+++ +|. +                   
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~-------------------  214 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-L-------------------  214 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-C-------------------
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-c-------------------
Confidence            77666555556666777777777763 4443344467778888888888888763 221 1                   


Q ss_pred             CCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCe
Q 036717          359 GADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHG  438 (580)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  438 (580)
                                                                      ..+++|+.|+|++|.+++..|..|.++++|+.
T Consensus       215 ------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  246 (452)
T 3zyi_A          215 ------------------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK  246 (452)
T ss_dssp             ------------------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred             ------------------------------------------------cccccccEEECcCCcCcccCcccccCccCCCE
Confidence                                                            01678999999999999999999999999999


Q ss_pred             EecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          439 LNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       439 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      |+|++|.+++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|++.|.|..
T Consensus       247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99999999999999999999999999999999988888899999999999999999998864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.96  E-value=2.9e-31  Score=285.36  Aligned_cols=312  Identities=13%  Similarity=0.135  Sum_probs=170.4

Q ss_pred             EEECCCCCCcccCchHHhhCCCCCcEEEccCCc-ccCCCC----------------CCCCCCccEEEccCCCCCccCChh
Q 036717           11 YLDLSHNKLAGNFPTWLLENNTKLEVLYLINNS-FSGFQL----------------TGAQHGLLSLDISKNSFTGELPQN   73 (580)
Q Consensus        11 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~----------------~~~~~~L~~L~L~~n~l~~~~~~~   73 (580)
                      .+++++...  ..|..++..+++|++|+++++. +.+...                ...+++|++|++++|.+++..+..
T Consensus        47 ~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           47 KVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             EEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             EEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            444444322  3455556667777777777654 111110                014567777777777766555555


Q ss_pred             HhhcCCCCcEEEcccC-cCccc-cchhhhcCCCCCEEEcccCcCccccchH---HHhCCCCCcEEEccccc--CCCc-CC
Q 036717           74 MGIVLQKLVYMNISKN-SFEGN-IPSSIAKMQGLRFLDVSTNNFAGELSQS---LVTNCFSLIWLDLSNNN--FDGQ-IF  145 (580)
Q Consensus        74 ~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~--l~~~-~~  145 (580)
                      +...+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..   +...+++|++|++++|.  +... ..
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            5445677777777776 44422 3334446777777777777665332221   12355677777777765  2211 11


Q ss_pred             ccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCC-------CCCCchhhhcCCCCCEE-EcccCcCCCcCc
Q 036717          146 PNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL-------SGHIPSWMGNFSYLQIL-SMSKNLLEGNIP  217 (580)
Q Consensus       146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~  217 (580)
                      ..+..+++|++|++++|...+.++..+..+++|++|+++.+..       . .++..+.++++|+.| .+.+... ..++
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~  282 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLP  282 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHH
Confidence            1123457777777777622223555566677777777554432       1 123356667777777 3332221 1334


Q ss_pred             hhccCCCCCcEEEccCCcCccccCCcc--CCCCCcEEEeeCCcCccc-CChhccCCCCccEEeCC---------CCcCcc
Q 036717          218 VQFNDLLDLEILNISENNLSGSMISTL--NLSSVEHLYLQNNALGGS-IPNTFFRGSALETLDLR---------DNNFSG  285 (580)
Q Consensus       218 ~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~---------~n~l~~  285 (580)
                      ..+..+++|++|++++|.+++......  .+++|++|++++| +.+. ++.....+++|++|+++         .+.+++
T Consensus       283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~  361 (594)
T 2p1m_B          283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE  361 (594)
T ss_dssp             GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred             HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence            444456677777777776554332211  5677777777766 3322 22222346677777662         334443


Q ss_pred             cCchhh-ccCcCcceeecccccccccCccccc-CCCCCCEEEee
Q 036717          286 RIPHQI-NEHSNLRALLLRANYLQGPIPHQLC-RLRKLGIMDLS  327 (580)
Q Consensus       286 ~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~  327 (580)
                      .....+ ..+++|+.|.+..|.+++.....+. .+++|+.|+++
T Consensus       362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            332233 2367777777776777655444443 46777777777

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1e-28  Score=239.50  Aligned_cols=229  Identities=21%  Similarity=0.219  Sum_probs=168.3

Q ss_pred             CEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCC
Q 036717          203 QILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN  281 (580)
Q Consensus       203 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  281 (580)
                      ++++.+++.++ .+|..+  .+++++|++++|.+++.++..+ .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34455555444 233222  2455566666666555554433 5566666666666666555666777777777777777


Q ss_pred             c-CcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCC
Q 036717          282 N-FSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA  360 (580)
Q Consensus       282 ~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~  360 (580)
                      . ++...|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..                   
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------  151 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-------------------  151 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence            6 66555667777777888888888777766777777888888888888876433332221                   


Q ss_pred             CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEe
Q 036717          361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLN  440 (580)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  440 (580)
                                                                      +++|+.|++++|++++..+..|..+++|++|+
T Consensus       152 ------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          152 ------------------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ------------------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence                                                            67788888888888877777888999999999


Q ss_pred             cccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC
Q 036717          441 LSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK  501 (580)
Q Consensus       441 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  501 (580)
                      +++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|+++|.++..
T Consensus       184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~  244 (285)
T 1ozn_A          184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence            9999999888999999999999999999999877788999999999999999999888754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=6.1e-28  Score=234.01  Aligned_cols=207  Identities=23%  Similarity=0.269  Sum_probs=124.1

Q ss_pred             CCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEE
Q 036717          128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILS  206 (580)
Q Consensus       128 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  206 (580)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            344444444444444433444455555555555555554444455555555555555554 4433344555555555555


Q ss_pred             cccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717          207 MSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG  285 (580)
Q Consensus       207 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  285 (580)
                      +++|.+.+..+..|..+++|++|++++|.+++.++..+ .+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            55555554445555555555555555555555544433 55666666666666665555556667777777777777776


Q ss_pred             cCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCc
Q 036717          286 RIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS  334 (580)
Q Consensus       286 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  334 (580)
                      ..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            6677777777777777777777766666677777888888888877643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.4e-28  Score=238.66  Aligned_cols=235  Identities=19%  Similarity=0.234  Sum_probs=172.4

Q ss_pred             CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEe
Q 036717          175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYL  254 (580)
Q Consensus       175 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  254 (580)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++..+.....+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            356666666666666 45555666666666666666666 5555555555555555555555533222224455555555


Q ss_pred             eCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCc
Q 036717          255 QNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS  334 (580)
Q Consensus       255 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  334 (580)
                      ++|.+.+.+|..+..      .         ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++ 
T Consensus       158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            554444444433221      0         01122445889999999999998 778889999999999999999974 


Q ss_pred             cChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccE
Q 036717          335 IPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAG  414 (580)
Q Consensus       335 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  414 (580)
                      +|..+..                                                                   +++|+.
T Consensus       221 l~~~l~~-------------------------------------------------------------------l~~L~~  233 (328)
T 4fcg_A          221 LGPAIHH-------------------------------------------------------------------LPKLEE  233 (328)
T ss_dssp             CCGGGGG-------------------------------------------------------------------CTTCCE
T ss_pred             Cchhhcc-------------------------------------------------------------------CCCCCE
Confidence            5544332                                                                   678999


Q ss_pred             EEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcc
Q 036717          415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNL  494 (580)
Q Consensus       415 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  494 (580)
                      |++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|+|++|++.+.+|+.+..+++|+.+++..|.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997765


Q ss_pred             c
Q 036717          495 S  495 (580)
Q Consensus       495 ~  495 (580)
                      .
T Consensus       314 ~  314 (328)
T 4fcg_A          314 A  314 (328)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=1.7e-29  Score=248.62  Aligned_cols=266  Identities=20%  Similarity=0.238  Sum_probs=212.0

Q ss_pred             CCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccC
Q 036717          154 LQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE  233 (580)
Q Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (580)
                      ++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4455666666654444555666788888888888887777788888888888888888875544  78888888888888


Q ss_pred             CcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc
Q 036717          234 NNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH  313 (580)
Q Consensus       234 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  313 (580)
                      |.+++.+.    .++|++|++++|.+++..+..   +++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus        90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           90 NYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             SEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             CccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence            88876553    378899999999888655433   57899999999999987777888899999999999999887777


Q ss_pred             ccc-CCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccE
Q 036717          314 QLC-RLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVE  392 (580)
Q Consensus       314 ~~~-~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (580)
                      .+. .+++|+.|++++|.+++. |..                                                      
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~-~~~------------------------------------------------------  187 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDV-KGQ------------------------------------------------------  187 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEE-ECC------------------------------------------------------
T ss_pred             HHhhccCcCCEEECCCCcCccc-ccc------------------------------------------------------
Confidence            664 789999999999998632 110                                                      


Q ss_pred             EEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccc-
Q 036717          393 VNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN-  471 (580)
Q Consensus       393 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-  471 (580)
                                    ..+++|+.|++++|++++. |..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. 
T Consensus       188 --------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          188 --------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             --------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             --------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence                          0167899999999999955 445999999999999999999 57888999999999999999998 


Q ss_pred             ccCchhhcCCCCCCEEeccC-CcccccCC
Q 036717          472 GQIPPQLTELHSLSKFDVSY-NNLSGPIP  499 (580)
Q Consensus       472 ~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p  499 (580)
                      +.+|..+..++.|+.+++++ +.++|..|
T Consensus       252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             cCHHHHHhccccceEEECCCchhccCCch
Confidence            77888999999999999994 45665544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=4.5e-30  Score=276.13  Aligned_cols=423  Identities=15%  Similarity=0.098  Sum_probs=274.3

Q ss_pred             cccCCCCCEEECCCCCCcccC---c-----------hHHhhCCCCCcEEEccCCcccCCCCC---CCCCCccEEEccCC-
Q 036717            3 LRHQFNLKYLDLSHNKLAGNF---P-----------TWLLENNTKLEVLYLINNSFSGFQLT---GAQHGLLSLDISKN-   64 (580)
Q Consensus         3 l~~~~~L~~L~Ls~n~i~~~~---~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~L~~n-   64 (580)
                      +..+++|+.|+++++.....+   |           ..+...+++|++|+|++|.+++....   ..+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            456788888888887522111   1           23345788888999988877654221   15788889998888 


Q ss_pred             CCCccCChhHhhcCCCCcEEEcccCcCccccchhhh----cCCCCCEEEcccCc--CccccchHHHhCCCCCcEEEcccc
Q 036717           65 SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIA----KMQGLRFLDVSTNN--FAGELSQSLVTNCFSLIWLDLSNN  138 (580)
Q Consensus        65 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n  138 (580)
                      .+++.....+...+++|++|++++|.+++..+..+.    .+++|++|++++|.  +.......+...+++|++|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            454332334445788899999988887765555444    56688899888886  332222333456788899998887


Q ss_pred             cCCCcCCccccCCCCCCEEeccCc-------cccccccccccCCCCCCEE-EcccCCCCCCCchhhhcCCCCCEEEcccC
Q 036717          139 NFDGQIFPNYMNLTQLQLLYLDNN-------HFSGKIKDGLLRSTELMVL-DISNNRLSGHIPSWMGNFSYLQILSMSKN  210 (580)
Q Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  210 (580)
                      ...+.++..+..+++|++|+++.+       .+.+ ++..+.++++|+.+ .+..... +.++..+..+++|++|++++|
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred             CcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence            322235566677888888886544       2332 33467788888888 3443322 244555567788889998888


Q ss_pred             cCCCcC-chhccCCCCCcEEEccCCcCccccCCcc--CCCCCcEEEeeC---------CcCcccCChhcc-CCCCccEEe
Q 036717          211 LLEGNI-PVQFNDLLDLEILNISENNLSGSMISTL--NLSSVEHLYLQN---------NALGGSIPNTFF-RGSALETLD  277 (580)
Q Consensus       211 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~---------n~l~~~~~~~~~-~~~~L~~L~  277 (580)
                      .+++.. ...+..+++|++|++++| +.......+  .+++|++|++.+         +.+++.....+. .+++|+.|+
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~  378 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL  378 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence            866432 233567888889988887 432222211  478888888844         344433333333 378888888


Q ss_pred             CCCCcCcccCchhhc-cCcCcceeecc--c----cccccc-----CcccccCCCCCCEEEeeCCeecCccChhhhhhccc
Q 036717          278 LRDNNFSGRIPHQIN-EHSNLRALLLR--A----NYLQGP-----IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFW  345 (580)
Q Consensus       278 l~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~  345 (580)
                      ++.|.+++..+..+. .+++|+.|+++  +    +.+++.     ++..+..+++|+.|++++ .+++..+..+..    
T Consensus       379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~----  453 (594)
T 2p1m_B          379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT----  453 (594)
T ss_dssp             EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----
T ss_pred             HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----
Confidence            888888766555554 57888888888  3    455521     122356778888888866 454332222211    


Q ss_pred             ccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceee
Q 036717          346 KVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGN  425 (580)
Q Consensus       346 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  425 (580)
                                                                                    .+++|+.|++++|.+++.
T Consensus       454 --------------------------------------------------------------~~~~L~~L~L~~~~i~~~  471 (594)
T 2p1m_B          454 --------------------------------------------------------------YAKKMEMLSVAFAGDSDL  471 (594)
T ss_dssp             --------------------------------------------------------------HCTTCCEEEEESCCSSHH
T ss_pred             --------------------------------------------------------------hchhccEeeccCCCCcHH
Confidence                                                                          156788888988888765


Q ss_pred             CCccc-ccccCCCeEecccCcceecccc-cccCcccCCEEECCCCcccccCchhh-cCCCCCCEEeccCCccc
Q 036717          426 IPSEI-GDLQNIHGLNLSYNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSKFDVSYNNLS  495 (580)
Q Consensus       426 ~~~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~  495 (580)
                      .+..+ ..+++|++|++++|.+++..+. ....+++|++|++++|+++......+ ..++.|+...+..+.-.
T Consensus       472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            55555 6688899999999888654443 44568889999999888865444444 55677776666655443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.9e-27  Score=242.93  Aligned_cols=249  Identities=19%  Similarity=0.186  Sum_probs=178.6

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      ..+.++.++..++ .+|..+   .++++.|++++|++++..+..|.++++|++|+|++|.++ .++...+.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            4567888888887 788765   367888888888888777788888888888888888887 56655567788888888


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEEcccCcCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~  213 (580)
                      +++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|..+++|++|++++|.++
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            88888876666667777888888888777776656666777777777777643 33222334555556666666655554


Q ss_pred             CcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc
Q 036717          214 GNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE  293 (580)
Q Consensus       214 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  293 (580)
                                              ..+ ....+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..
T Consensus       199 ------------------------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          199 ------------------------EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             ------------------------SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             ------------------------ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence                                    221 1224556666666666666666667777777777777777777777777777


Q ss_pred             CcCcceeecccccccccCcccccCCCCCCEEEeeCCeecC
Q 036717          294 HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYG  333 (580)
Q Consensus       294 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  333 (580)
                      +++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            7788888888888877666777778888888888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.3e-27  Score=234.13  Aligned_cols=222  Identities=17%  Similarity=0.237  Sum_probs=105.9

Q ss_pred             CCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEe
Q 036717           79 QKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLY  158 (580)
Q Consensus        79 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  158 (580)
                      ++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..+ ..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            34444444444444 33444444444444444444444 344332 34444444444444444 3344444444444444


Q ss_pred             ccCccccccccccc---------cCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEE
Q 036717          159 LDNNHFSGKIKDGL---------LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEIL  229 (580)
Q Consensus       159 l~~n~l~~~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  229 (580)
                      +++|.+.+.+|..+         ..+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence            44444433333333         23555555555555555 445555555555555555555552 33345555555555


Q ss_pred             EccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccc
Q 036717          230 NISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY  306 (580)
Q Consensus       230 ~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~  306 (580)
                      ++++|.+.+..+..+ .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++|+.+++..+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            555554444433332 44444455554444444455455555555555555555555555555555555555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=3.9e-27  Score=243.82  Aligned_cols=251  Identities=22%  Similarity=0.237  Sum_probs=171.1

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      ..+.++.++..++ .+|..+   .+++++|++++|.+++..+..|.++++|++|+|++|.++ .++...+.++++|++|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence            3466777777776 666644   356777777777777666777777777777777777776 44444456666677777


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG  214 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  214 (580)
                      |++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|..                       +..
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~  186 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-----------------------LEY  186 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-----------------------CCE
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC-----------------------ccc
Confidence            776666655555566666666666666666654444555556666666655322                       221


Q ss_pred             cCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccC
Q 036717          215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH  294 (580)
Q Consensus       215 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  294 (580)
                      ..+..|..+++|++|++++|.+++.+ ....+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+..+
T Consensus       187 i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          187 ISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence            22233444555555555555554432 23356777778888888877777888888888888888888888888888888


Q ss_pred             cCcceeecccccccccCcccccCCCCCCEEEeeCCeecCc
Q 036717          295 SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS  334 (580)
Q Consensus       295 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  334 (580)
                      ++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            8889999988888877777788888999999999988643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=5.7e-29  Score=244.91  Aligned_cols=254  Identities=18%  Similarity=0.181  Sum_probs=124.6

Q ss_pred             EEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccc
Q 036717           59 LDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNN  138 (580)
Q Consensus        59 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  138 (580)
                      .+++.+.+. ..+..++..+++|++|++++|++++..|..|+.+++|++|++++|.+++..+   +..+++|++|++++|
T Consensus        15 ~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           15 EKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN   90 (317)
T ss_dssp             ESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSS
T ss_pred             eeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCC
Confidence            334444433 2333333344455555555555555444555555555555555555543222   345555555555555


Q ss_pred             cCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCch
Q 036717          139 NFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPV  218 (580)
Q Consensus       139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  218 (580)
                      .+++..     ..++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus        91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           91 YVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             EEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             cccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence            544211     2245555555555555433222   34455555555555544444555555555555555555544444


Q ss_pred             hcc-CCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCc
Q 036717          219 QFN-DLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNL  297 (580)
Q Consensus       219 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  297 (580)
                      .+. .+++|++|++++|.+++.+... .+++|++|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+++|
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L  239 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL  239 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred             HHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence            332 4455555555555555442221 34555555555555553 2223445555555555555555 334445555555


Q ss_pred             ceeeccccccc-ccCcccccCCCCCCEEEee
Q 036717          298 RALLLRANYLQ-GPIPHQLCRLRKLGIMDLS  327 (580)
Q Consensus       298 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~  327 (580)
                      +.|++++|.++ +.++..+..+++|+.++++
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            55555555554 4444444555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=4.2e-28  Score=252.42  Aligned_cols=236  Identities=22%  Similarity=0.265  Sum_probs=177.1

Q ss_pred             CCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEe
Q 036717          175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYL  254 (580)
Q Consensus       175 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  254 (580)
                      +++|+.|++++|.+.+..|..|+.+++|++|++++|.+++..+  +..+++|++|++++|.+++.++    .++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            3467777777777776666677777777777777777765444  6777777777777777776553    267888888


Q ss_pred             eCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCccccc-CCCCCCEEEeeCCeecC
Q 036717          255 QNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC-RLRKLGIMDLSHNRLYG  333 (580)
Q Consensus       255 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~  333 (580)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88888765443   346788888888888877777788888888888888888877777775 67888888888888764


Q ss_pred             ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccccccc
Q 036717          334 SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMA  413 (580)
Q Consensus       334 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  413 (580)
                      ..+.                                                                     ..+++|+
T Consensus       184 ~~~~---------------------------------------------------------------------~~l~~L~  194 (487)
T 3oja_A          184 VKGQ---------------------------------------------------------------------VVFAKLK  194 (487)
T ss_dssp             EECC---------------------------------------------------------------------CCCTTCC
T ss_pred             cccc---------------------------------------------------------------------ccCCCCC
Confidence            3110                                                                     0157788


Q ss_pred             EEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccc-ccCchhhcCCCCCCEEecc
Q 036717          414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN-GQIPPQLTELHSLSKFDVS  490 (580)
Q Consensus       414 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls  490 (580)
                      .|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            88888888886544 48888888888888888885 6777888888888888888887 6677778888888888776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=3.3e-26  Score=242.80  Aligned_cols=267  Identities=23%  Similarity=0.295  Sum_probs=134.0

Q ss_pred             CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717            8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS   87 (580)
Q Consensus         8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~   87 (580)
                      +++.|++++|.++ .+|..+.   ++|++|+|++|.++.+  +..+++|++|++++|+++ .+|.    .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l--p~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL--PALPPELRTLEVSGNQLT-SLPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC--CCCCTTCCEEEECSCCCS-CCCC----CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC--CCcCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECc
Confidence            4556666666665 5554332   5566666666665543  224555566666665555 4444    34555555555


Q ss_pred             cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc
Q 036717           88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK  167 (580)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (580)
                      +|.+++ +|.   .+++|++|++++|.++ .+|.    .+++|++|++++|.+++ ++.   .+++|+.|++++|.+++ 
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence            555553 222   3455555555555555 3443    13455555555555543 121   22445555555555542 


Q ss_pred             ccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCC
Q 036717          168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS  247 (580)
Q Consensus       168 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  247 (580)
                      +|   ..+++|+.|++++|.+++ +|.                           ..++|+.|++++|.++..+.   .++
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~-l~~---------------------------~~~~L~~L~L~~N~l~~l~~---~~~  221 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS-LPT---------------------------LPSELYKLWAYNNRLTSLPA---LPS  221 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC-CCC---------------------------CCTTCCEEECCSSCCSSCCC---CCT
T ss_pred             Cc---ccCCCCcEEECCCCCCCC-CCC---------------------------ccchhhEEECcCCcccccCC---CCC
Confidence            22   223445555555554442 221                           12344455555554443322   124


Q ss_pred             CCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717          248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS  327 (580)
Q Consensus       248 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  327 (580)
                      +|++|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            55555555555553 33   23345556666666555 3333   3455666666666665 445555666666666666


Q ss_pred             CCeecCccChhhhhh
Q 036717          328 HNRLYGSIPACITNS  342 (580)
Q Consensus       328 ~n~l~~~~p~~~~~~  342 (580)
                      +|++++..|..+...
T Consensus       293 ~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          293 GNPLSERTLQALREI  307 (622)
T ss_dssp             SCCCCHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHhc
Confidence            666665555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.7e-28  Score=239.51  Aligned_cols=245  Identities=21%  Similarity=0.222  Sum_probs=134.4

Q ss_pred             CCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCc-cccchhhh-------cCCCCCEEEcccCcCccccchHHH
Q 036717           53 QHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFE-GNIPSSIA-------KMQGLRFLDVSTNNFAGELSQSLV  124 (580)
Q Consensus        53 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~  124 (580)
                      .++|+.|++++|.+  .+|..+...   |++|++++|.++ ..+|..+.       ++++|++|++++|.+++.+|..++
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34566666777766  566655432   666666666663 34454444       566666666666666655555432


Q ss_pred             -hCCCCCcEEEcccccCCCcCCccccCC-----CCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCC--Cchhh
Q 036717          125 -TNCFSLIWLDLSNNNFDGQIFPNYMNL-----TQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGH--IPSWM  196 (580)
Q Consensus       125 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~  196 (580)
                       ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..+..+..+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             5566666666666666654 4444444     6666666666666655555666666666666666665432  12222


Q ss_pred             --hcCCCCCEEEcccCcCCC---cCchhccCCCCCcEEEccCCcCccccC-Ccc-CCCCCcEEEeeCCcCcccCChhccC
Q 036717          197 --GNFSYLQILSMSKNLLEG---NIPVQFNDLLDLEILNISENNLSGSMI-STL-NLSSVEHLYLQNNALGGSIPNTFFR  269 (580)
Q Consensus       197 --~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~~~~  269 (580)
                        ..+++|++|++++|.+++   .....+..+++|++|++++|.+++..+ ..+ .+++|++|++++|.++ .+|..+. 
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence              555666666666666552   111233455556666666665555442 111 3455555555555555 3444333 


Q ss_pred             CCCccEEeCCCCcCcccCchhhccCcCcceeeccccccc
Q 036717          270 GSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQ  308 (580)
Q Consensus       270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  308 (580)
                       ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence             4555555555555533 33 445555555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=5.7e-28  Score=237.17  Aligned_cols=248  Identities=19%  Similarity=0.174  Sum_probs=200.4

Q ss_pred             hCCCCCcEEEccCCcccCCCCCC-CCCCccEEEccCCCCC-ccCChhHh------hcCCCCcEEEcccCcCccccchhh-
Q 036717           29 ENNTKLEVLYLINNSFSGFQLTG-AQHGLLSLDISKNSFT-GELPQNMG------IVLQKLVYMNISKNSFEGNIPSSI-   99 (580)
Q Consensus        29 ~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~-   99 (580)
                      ...++|++|++++|.+ .  ++. ....|+.|++++|.+. +.+|...+      ..+++|++|++++|++++.+|..+ 
T Consensus        40 ~~~~~L~~l~l~~n~l-~--~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-A--DLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEECTTHHHHCCTT-C--CCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             ccCCCceeEeeccccc-c--cHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            3456678888888887 3  232 2233888888888873 45665543      158999999999999998888876 


Q ss_pred             -hcCCCCCEEEcccCcCccccchHHHhCC-----CCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc--cccc
Q 036717          100 -AKMQGLRFLDVSTNNFAGELSQSLVTNC-----FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK--IKDG  171 (580)
Q Consensus       100 -~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~  171 (580)
                       +.+++|++|++++|.+++. |.. +..+     ++|++|++++|.+.+..+..|..+++|++|++++|++.+.  .+..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence             8999999999999999854 644 3555     8999999999999988888999999999999999998754  2334


Q ss_pred             c--cCCCCCCEEEcccCCCCCC---CchhhhcCCCCCEEEcccCcCCCcCc-hhccCCCCCcEEEccCCcCccccCCccC
Q 036717          172 L--LRSTELMVLDISNNRLSGH---IPSWMGNFSYLQILSMSKNLLEGNIP-VQFNDLLDLEILNISENNLSGSMISTLN  245 (580)
Q Consensus       172 l--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~  245 (580)
                      +  ..+++|++|++++|.+++.   ....+..+++|++|++++|.+++..| ..+..+++|++|++++|.++..+.... 
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            4  7899999999999999832   22445678999999999999997664 556778999999999999996555443 


Q ss_pred             CCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717          246 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG  285 (580)
Q Consensus       246 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  285 (580)
                       ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             8999999999999966 65 8899999999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2e-25  Score=236.85  Aligned_cols=260  Identities=24%  Similarity=0.303  Sum_probs=189.3

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      +++.|++++|.++ .+|..++   ++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            4566666666666 5665442   56777777777666 3443   4567777777777766 5554    556777777


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG  214 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  214 (580)
                      +++|.+++. +.   .+++|+.|++++|++++ +|..   +++|++|++++|.+++ +|.   .+++|+.|++++|.+++
T Consensus       108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            777777643 22   45677788888877774 4432   4778888888888874 343   34678889999998884


Q ss_pred             cCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccC
Q 036717          215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH  294 (580)
Q Consensus       215 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  294 (580)
                       +|   ..+++|+.|++++|.+++.+.   .+++|+.|++++|.++ .+|..   +++|+.|++++|++++ +|   ..+
T Consensus       176 -l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l  240 (622)
T 3g06_A          176 -LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP  240 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred             -Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence             44   456889999999999987554   3579999999999998 45532   4789999999999985 55   456


Q ss_pred             cCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCcc
Q 036717          295 SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVD  366 (580)
Q Consensus       295 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  366 (580)
                      ++|+.|++++|.+++ +|.   .+++|+.|++++|.++ .+|..+...       ..+..+++.++.+....
T Consensus       241 ~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l-------~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          241 SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHL-------SSETTVNLEGNPLSERT  300 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGS-------CTTCEEECCSCCCCHHH
T ss_pred             CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhc-------cccCEEEecCCCCCCcC
Confidence            899999999999984 555   5789999999999998 788877764       35677777777766543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=2.5e-26  Score=221.55  Aligned_cols=215  Identities=22%  Similarity=0.251  Sum_probs=162.4

Q ss_pred             CCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecc
Q 036717          225 DLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR  303 (580)
Q Consensus       225 ~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  303 (580)
                      ++++|++++|.+++.++..+ .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45566666666555554333 55666666666666665555567777777777777777776666777777788888888


Q ss_pred             cccccccCcccccCCCCCCEEEeeCCeecC-ccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccc
Q 036717          304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYG-SIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDES  382 (580)
Q Consensus       304 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (580)
                      +|.+++..+..+..+++|+.|++++|.+++ .+|..+..                                         
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----------------------------------------  147 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----------------------------------------  147 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence            887776666667788888888888888864 24554433                                         


Q ss_pred             hhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCC----eEecccCcceecccccccCcc
Q 036717          383 DLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIH----GLNLSYNFLSGSIPESFSNLK  458 (580)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~  458 (580)
                                                +++|+.|++++|++++..+..+..+++|+    .|++++|.+++..+..+.. .
T Consensus       148 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~  200 (276)
T 2z62_A          148 --------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I  200 (276)
T ss_dssp             --------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-C
T ss_pred             --------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-C
Confidence                                      67888889999988887778888888877    8999999999776666654 4


Q ss_pred             cCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCcccCCc
Q 036717          459 MIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTF  507 (580)
Q Consensus       459 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  507 (580)
                      +|++|+|++|++++..+..+..+++|++|++++|+++|.||...++..|
T Consensus       201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~  249 (276)
T 2z62_A          201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  249 (276)
T ss_dssp             CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence            8999999999999887778899999999999999999999876554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2.6e-25  Score=213.46  Aligned_cols=211  Identities=22%  Similarity=0.231  Sum_probs=170.8

Q ss_pred             CCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccc
Q 036717          225 DLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRA  304 (580)
Q Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  304 (580)
                      ..+.++++++.++..+...  .+++++|++++|.+++..+..|..+++|++|++++|+++...+..+..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            3566777777766544332  25678888888888766666788888888888888888865556667888888888888


Q ss_pred             ccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchh
Q 036717          305 NYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDL  384 (580)
Q Consensus       305 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (580)
                      |.+++..+..+..+++|+.|++++|.+++..|..+..                                           
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------  131 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-------------------------------------------  131 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence            8888777777888889999999999887544433322                                           


Q ss_pred             hhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEE
Q 036717          385 RWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLD  464 (580)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  464 (580)
                                              +++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus       132 ------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  187 (270)
T 2o6q_A          132 ------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK  187 (270)
T ss_dssp             ------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence                                    67899999999999977777799999999999999999988888899999999999


Q ss_pred             CCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCccc
Q 036717          465 LSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQF  504 (580)
Q Consensus       465 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  504 (580)
                      |++|++++..+..+..+++|+.|++++|++.|.|+...++
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~  227 (270)
T 2o6q_A          188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYM  227 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHH
T ss_pred             CCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHH
Confidence            9999999887788999999999999999999998754333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=3.6e-25  Score=213.42  Aligned_cols=223  Identities=18%  Similarity=0.211  Sum_probs=164.4

Q ss_pred             EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEccc
Q 036717           58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN  137 (580)
Q Consensus        58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  137 (580)
                      .++.++..+. .+|..+   .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++
T Consensus        11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence            3455555555 566544   356888888888888766667888888888888888887 55555567788888888888


Q ss_pred             ccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCC-CchhhhcCCCCCEEEcccCcCCCcC
Q 036717          138 NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGH-IPSWMGNFSYLQILSMSKNLLEGNI  216 (580)
Q Consensus       138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~  216 (580)
                      |.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            888777777788888888888888888876666778888888888888888763 5778888888888888888888766


Q ss_pred             chhccCCCCCc----EEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717          217 PVQFNDLLDLE----ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG  285 (580)
Q Consensus       217 ~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  285 (580)
                      +..+..+++++    .+++++|.+++.++..+...+|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            66666666555    7777777777766666655567777777777765555556666777777777776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=239.95  Aligned_cols=235  Identities=21%  Similarity=0.208  Sum_probs=137.7

Q ss_pred             CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEE
Q 036717           54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWL  133 (580)
Q Consensus        54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  133 (580)
                      ++|++|+|++|.+++ ++...+..+++|++|++++|.+++..|  ++.+++|++|++++|.++ .++.     .++|++|
T Consensus        34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L  104 (487)
T 3oja_A           34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL  104 (487)
T ss_dssp             GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred             CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence            466666666666663 333333456666666666666665444  666666666666666665 3332     2566666


Q ss_pred             EcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhh-cCCCCCEEEcccCcC
Q 036717          134 DLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG-NFSYLQILSMSKNLL  212 (580)
Q Consensus       134 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l  212 (580)
                      ++++|.+++..+.   .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            6666666644332   245666666666666665555666666666666666666655555554 466666666666666


Q ss_pred             CCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc-ccCchhh
Q 036717          213 EGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS-GRIPHQI  291 (580)
Q Consensus       213 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~  291 (580)
                      ++..  .+..+++|+.|++++|.+++.++....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|.++
T Consensus       182 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          182 YDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             CEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             cccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            5432  1234566666666666666655554455666666666666653 4555555566666666666665 4455555


Q ss_pred             ccCcCcceeecc
Q 036717          292 NEHSNLRALLLR  303 (580)
Q Consensus       292 ~~~~~L~~L~l~  303 (580)
                      ..++.|+.+++.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=2.9e-24  Score=207.89  Aligned_cols=207  Identities=22%  Similarity=0.175  Sum_probs=170.0

Q ss_pred             ccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcce
Q 036717          220 FNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRA  299 (580)
Q Consensus       220 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  299 (580)
                      +..++++++++++++.++..+...  .+.++.|++++|.+++..+..+..+++|+.|++++|.+++..+ . ..+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence            456667777777777777655443  2678888888888887777788888888888888888875433 2 67888999


Q ss_pred             eecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhccccccccc
Q 036717          300 LLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRL  379 (580)
Q Consensus       300 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  379 (580)
                      |++++|.++ .+|..+..+++|+.|++++|++++..|..+..                                      
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------  122 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence            999999888 66777888899999999999987544443322                                      


Q ss_pred             ccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCccc
Q 036717          380 DESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKM  459 (580)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  459 (580)
                                                   +++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++
T Consensus       123 -----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  173 (290)
T 1p9a_G          123 -----------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (290)
T ss_dssp             -----------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             -----------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence                                         678999999999999888888999999999999999999777778899999


Q ss_pred             CCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCC
Q 036717          460 IESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP  499 (580)
Q Consensus       460 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  499 (580)
                      |+.|+|++|+++ .+|..+..+++|+.++|++|++.|.|.
T Consensus       174 L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            999999999999 678888888999999999999999873

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.3e-23  Score=201.68  Aligned_cols=180  Identities=20%  Similarity=0.256  Sum_probs=113.3

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      +.+.++++++.++ .+|..+   .+++++|++++|++++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            4566777777766 566544   256777777777777665567777777777777777776 56666566677777777


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG  214 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  214 (580)
                      +++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            77777765555556666667777666666665555555666666666666666665444445556666666666665554


Q ss_pred             cCchhccCCCCCcEEEccCCcCccc
Q 036717          215 NIPVQFNDLLDLEILNISENNLSGS  239 (580)
Q Consensus       215 ~~~~~~~~l~~L~~L~l~~n~l~~~  239 (580)
                      ..+..|..+++|++|++++|.+++.
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             eChhHhccCCCcCEEECCCCcCCcC
Confidence            4444455555555555555444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=3.4e-24  Score=205.89  Aligned_cols=221  Identities=16%  Similarity=0.186  Sum_probs=165.8

Q ss_pred             CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccC
Q 036717           10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKN   89 (580)
Q Consensus        10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n   89 (580)
                      ..+++.++.+.+...   ...+++|+.|++++|.++.......+++|++|++++|.+.+ ++ .+ ..+++|++|++++|
T Consensus        22 ~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           22 IKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS-AL-KELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG-GG-TTCTTCCEEECTTS
T ss_pred             HHHHhcCcccccccc---cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch-hh-cCCCCCCEEECCCC
Confidence            344556666653332   23677888888888887776545577888888888888774 43 33 46788888888888


Q ss_pred             cCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccc
Q 036717           90 SFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK  169 (580)
Q Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (580)
                      .+++..+..++.+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           96 QLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            888777777788888888888888887 5565556778888888888888887666667788888888888888887766


Q ss_pred             ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc
Q 036717          170 DGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL  244 (580)
Q Consensus       170 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  244 (580)
                      ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+       .+++++.+++..|.+++..+..+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA  242 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTT
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcc
Confidence            667788888888888888887777777888888888888887653       35567888888888887766544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=7.5e-24  Score=203.43  Aligned_cols=206  Identities=19%  Similarity=0.235  Sum_probs=104.0

Q ss_pred             hcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCC
Q 036717          100 AKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELM  179 (580)
Q Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  179 (580)
                      ..+++|+.|++++|.+. .++.  +..+++|++|++++|.+++  .+.+..+++|++|++++|.+++..+..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34445555555555444 2322  2344555555555554443  12444555555555555555544444445555555


Q ss_pred             EEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCc
Q 036717          180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNA  258 (580)
Q Consensus       180 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~  258 (580)
                      +|++++|.+.+..+..|+.+++|++|++++|.+++..+..|..+++|++|++++|.+++.++..+ .+++|++|++++|.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            55555555554444445555555555555555554444444555555555555555554444333 44555555555555


Q ss_pred             CcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccC
Q 036717          259 LGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCR  317 (580)
Q Consensus       259 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  317 (580)
                      +++..+..+..+++|+.|++++|.+.+.       +++|+.+++..|.++|.+|..++.
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence            5544444455555566666666554422       334555555555555555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=6.1e-23  Score=198.60  Aligned_cols=199  Identities=21%  Similarity=0.200  Sum_probs=119.0

Q ss_pred             CCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcE
Q 036717           53 QHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIW  132 (580)
Q Consensus        53 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  132 (580)
                      ++++++++++++.++ .+|..+   .+++++|++++|.+++..+..|..+++|++|++++|.++ .++..  ..+++|++
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGT   81 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCE
T ss_pred             cCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCE
Confidence            445666666666665 555544   256777777777777666667777777777777777776 34432  45666777


Q ss_pred             EEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcC
Q 036717          133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL  212 (580)
Q Consensus       133 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  212 (580)
                      |++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            777766665 3455556666666666666666655555566666666666666666655555555566666666666666


Q ss_pred             CCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcC
Q 036717          213 EGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNAL  259 (580)
Q Consensus       213 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l  259 (580)
                      +...+..|..+++|+.|++++|.++..+...+..++|+.+++++|.+
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            54444445555555555555555554444333444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=7.3e-25  Score=219.78  Aligned_cols=177  Identities=22%  Similarity=0.195  Sum_probs=100.9

Q ss_pred             EEeccCccccccccccccCCCCCCEEEcccCCCCCCCc----hhhhcCC-CCCEEEcccCcCCCcCchhccCC-----CC
Q 036717          156 LLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIP----SWMGNFS-YLQILSMSKNLLEGNIPVQFNDL-----LD  225 (580)
Q Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~  225 (580)
                      .+.++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35666777776666666555667777777777765555    5566666 67777777777766555555543     66


Q ss_pred             CcEEEccCCcCccccCCcc-----CC-CCCcEEEeeCCcCcccCChhcc----C-CCCccEEeCCCCcCcccCc----hh
Q 036717          226 LEILNISENNLSGSMISTL-----NL-SSVEHLYLQNNALGGSIPNTFF----R-GSALETLDLRDNNFSGRIP----HQ  290 (580)
Q Consensus       226 L~~L~l~~n~l~~~~~~~~-----~~-~~L~~L~l~~n~l~~~~~~~~~----~-~~~L~~L~l~~n~l~~~~~----~~  290 (580)
                      |++|++++|.+++..+..+     .+ ++|++|++++|.+++..+..+.    . +++|++|++++|++++..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            6677777666665443322     22 5666666666666544443322    2 2466666666666654322    22


Q ss_pred             hccCc-CcceeecccccccccCcccc----cCC-CCCCEEEeeCCeec
Q 036717          291 INEHS-NLRALLLRANYLQGPIPHQL----CRL-RKLGIMDLSHNRLY  332 (580)
Q Consensus       291 ~~~~~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~  332 (580)
                      +..++ +|++|++++|.+++..+..+    ..+ ++|+.|++++|.++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            23333 56666666665554444322    223 35555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=9.3e-24  Score=200.30  Aligned_cols=212  Identities=21%  Similarity=0.237  Sum_probs=155.0

Q ss_pred             CCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717          248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS  327 (580)
Q Consensus       248 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  327 (580)
                      ..++++++++.++ .+|..+.  +.++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            3456666666665 4444333  467777777777776666677777777777777777777777777778888888888


Q ss_pred             CCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccc
Q 036717          328 HNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV  407 (580)
Q Consensus       328 ~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (580)
                      +|.+++..+..+..                                                                  
T Consensus        92 ~n~l~~~~~~~~~~------------------------------------------------------------------  105 (251)
T 3m19_A           92 NNQLASLPLGVFDH------------------------------------------------------------------  105 (251)
T ss_dssp             TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCcccccChhHhcc------------------------------------------------------------------
Confidence            88876433333221                                                                  


Q ss_pred             ccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEE
Q 036717          408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF  487 (580)
Q Consensus       408 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  487 (580)
                       +++|+.|+|++|++++..+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..+..+..+++|++|
T Consensus       106 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          106 -LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             -cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence             6788889999999887777778999999999999999998777789999999999999999998888899999999999


Q ss_pred             eccCCcccccCCCCcccCCcCc------cccCCCCCCCCCCCCCCCCCC
Q 036717          488 DVSYNNLSGPIPDKEQFSTFDE------SSYRGNLHLCGPPINKSCTNL  530 (580)
Q Consensus       488 ~Ls~N~l~~~~p~~~~~~~~~~------~~~~~n~~lc~~~~~~~C~~~  530 (580)
                      ++++|+++|.+....++..|-.      ....|+. +|+.|....|..+
T Consensus       185 ~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~  232 (251)
T 3m19_A          185 TLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG  232 (251)
T ss_dssp             ECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             EeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence            9999999998544433322211      1122333 6777777788764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=2.9e-24  Score=215.46  Aligned_cols=262  Identities=16%  Similarity=0.176  Sum_probs=149.3

Q ss_pred             EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccc----hhhhcCC-CCCEEEcccCcCccccchHHHhCC-----
Q 036717           58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP----SSIAKMQ-GLRFLDVSTNNFAGELSQSLVTNC-----  127 (580)
Q Consensus        58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l-----  127 (580)
                      ++++++|.++|.+|... ...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+ ..+     
T Consensus         2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSC
T ss_pred             ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccC
Confidence            45677777776665544 344558888888888776655    6677777 78888888887774444333 332     


Q ss_pred             CCCcEEEcccccCCCcCCccc----cCC-CCCCEEeccCccccccccccc----cC-CCCCCEEEcccCCCCCCCc----
Q 036717          128 FSLIWLDLSNNNFDGQIFPNY----MNL-TQLQLLYLDNNHFSGKIKDGL----LR-STELMVLDISNNRLSGHIP----  193 (580)
Q Consensus       128 ~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~----  193 (580)
                      ++|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++...    
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            677777777777665444432    233 566666666666654443332    22 2456666666665553222    


Q ss_pred             hhhhcCC-CCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCC-CCCcEEEeeCCcCccc----CChhc
Q 036717          194 SWMGNFS-YLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNL-SSVEHLYLQNNALGGS----IPNTF  267 (580)
Q Consensus       194 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~~  267 (580)
                      ..+..++ +|++|++++|.+++..+..+...                   ...+ ++|++|++++|.+++.    ++..+
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l  220 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKF-------------------LASIPASVTSLDLSANLLGLKSYAELAYIF  220 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHH-------------------HHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence            2223333 55555555555544333222211                   0012 3455555555555432    23334


Q ss_pred             cC-CCCccEEeCCCCcCcccCc----hhhccCcCcceeecccccccccC-------cccccCCCCCCEEEeeCCeecCcc
Q 036717          268 FR-GSALETLDLRDNNFSGRIP----HQINEHSNLRALLLRANYLQGPI-------PHQLCRLRKLGIMDLSHNRLYGSI  335 (580)
Q Consensus       268 ~~-~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~  335 (580)
                      .. .++|++|++++|.+++..+    ..+..+++|+.|++++|.+.+..       +..+..+++|+.||+++|++.+..
T Consensus       221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~  300 (362)
T 3goz_A          221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH  300 (362)
T ss_dssp             HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred             hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence            33 3467777777777765443    23355677777777777744322       335667788888888888887665


Q ss_pred             Chhhh
Q 036717          336 PACIT  340 (580)
Q Consensus       336 p~~~~  340 (580)
                      +..+.
T Consensus       301 ~~~~~  305 (362)
T 3goz_A          301 SIPIS  305 (362)
T ss_dssp             CHHHH
T ss_pred             hHHHH
Confidence            55443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=8.1e-25  Score=221.70  Aligned_cols=193  Identities=19%  Similarity=0.263  Sum_probs=128.0

Q ss_pred             CCCCCcEEEeeCCcCcc----cCChhccCCCCccEEeCCCCcCcccCchhhc----cC---------cCcceeecccccc
Q 036717          245 NLSSVEHLYLQNNALGG----SIPNTFFRGSALETLDLRDNNFSGRIPHQIN----EH---------SNLRALLLRANYL  307 (580)
Q Consensus       245 ~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~---------~~L~~L~l~~n~l  307 (580)
                      .+++|++|++++|.+++    .++..+..+++|++|++++|.+++..+..+.    .+         ++|++|++++|.+
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            44566666666666654    3555666677777777777777644333332    23         6777777777777


Q ss_pred             c-ccCc---ccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccch
Q 036717          308 Q-GPIP---HQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD  383 (580)
Q Consensus       308 ~-~~~~---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (580)
                      + +.++   ..+..+++|+.|++++|.++..-...+....                                        
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~----------------------------------------  211 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG----------------------------------------  211 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT----------------------------------------
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH----------------------------------------
Confidence            6 3333   3566777888888888877521100000000                                        


Q ss_pred             hhhhccccEEEEeeccccceecccccccccEEEccCCcce----eeCCcccccccCCCeEecccCcceec----cccccc
Q 036717          384 LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT----GNIPSEIGDLQNIHGLNLSYNFLSGS----IPESFS  455 (580)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~  455 (580)
                                          +  ..+++|+.|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +|..+.
T Consensus       212 --------------------l--~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          212 --------------------L--AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             --------------------G--GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             --------------------h--hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence                                0  01567888888888885    56777788888888888888888765    556663


Q ss_pred             --CcccCCEEECCCCcccc----cCchhh-cCCCCCCEEeccCCcccccCC
Q 036717          456 --NLKMIESLDLSHNKLNG----QIPPQL-TELHSLSKFDVSYNNLSGPIP  499 (580)
Q Consensus       456 --~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~~p  499 (580)
                        .+++|++|+|++|++++    .+|..+ .++++|++|++++|++++..|
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence              37888888888888887    477766 667888888888888886553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=8e-24  Score=210.29  Aligned_cols=249  Identities=17%  Similarity=0.253  Sum_probs=181.4

Q ss_pred             CCEEEcccCCCCCCCchhhhcC--CCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccc-cCCcc-CCCCCcEEE
Q 036717          178 LMVLDISNNRLSGHIPSWMGNF--SYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS-MISTL-NLSSVEHLY  253 (580)
Q Consensus       178 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-~~~~L~~L~  253 (580)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+ .+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            566666666554   4455555  6777777777777655444 44677778888877776653 22222 677888888


Q ss_pred             eeCCcCcccCChhccCCCCccEEeCCCC-cCccc-CchhhccCcCcceeecccc-ccccc-CcccccCCC-CCCEEEeeC
Q 036717          254 LQNNALGGSIPNTFFRGSALETLDLRDN-NFSGR-IPHQINEHSNLRALLLRAN-YLQGP-IPHQLCRLR-KLGIMDLSH  328 (580)
Q Consensus       254 l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~  328 (580)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            8888887777778888889999999998 67753 6666788899999999999 88754 566778888 999999999


Q ss_pred             Ce--ec-CccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceec
Q 036717          329 NR--LY-GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYK  405 (580)
Q Consensus       329 n~--l~-~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (580)
                      |.  ++ +.+|..+..                                                                
T Consensus       205 ~~~~~~~~~l~~~~~~----------------------------------------------------------------  220 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRR----------------------------------------------------------------  220 (336)
T ss_dssp             CGGGSCHHHHHHHHHH----------------------------------------------------------------
T ss_pred             CcccCCHHHHHHHHhh----------------------------------------------------------------
Confidence            84  43 222322221                                                                


Q ss_pred             ccccccccEEEccCCc-ceeeCCcccccccCCCeEecccCc-ceecccccccCcccCCEEECCCCcccccCchhhcCC-C
Q 036717          406 GVILEHMAGLDLSSNE-LTGNIPSEIGDLQNIHGLNLSYNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-H  482 (580)
Q Consensus       406 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~  482 (580)
                         +++|+.|++++|. +++..+..+..+++|++|++++|. ++......++++++|+.|++++| ++..   .+..+ .
T Consensus       221 ---~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~  293 (336)
T 2ast_B          221 ---CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKE  293 (336)
T ss_dssp             ---CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHH
T ss_pred             ---CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHh
Confidence               6789999999999 777788889999999999999995 33222236888999999999999 4432   33333 3


Q ss_pred             CCCEEeccCCcccccCCCC
Q 036717          483 SLSKFDVSYNNLSGPIPDK  501 (580)
Q Consensus       483 ~L~~L~Ls~N~l~~~~p~~  501 (580)
                      ++..|++++|++++..|..
T Consensus       294 ~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          294 ALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             HSTTSEESCCCSCCTTCSS
T ss_pred             hCcceEEecccCccccCCc
Confidence            4777779999999887753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=3.4e-24  Score=217.15  Aligned_cols=246  Identities=19%  Similarity=0.244  Sum_probs=138.8

Q ss_pred             CChhHhhcCCCCcEEEcccCcCccccchh----hhcCCCCCEEEcccC---cCccccchHH------HhCCCCCcEEEcc
Q 036717           70 LPQNMGIVLQKLVYMNISKNSFEGNIPSS----IAKMQGLRFLDVSTN---NFAGELSQSL------VTNCFSLIWLDLS  136 (580)
Q Consensus        70 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n---~l~~~~~~~~------~~~l~~L~~L~L~  136 (580)
                      ++..+ ..+++|++|++++|.++...+..    +..+++|++|+|++|   ++++.+|..+      +..+++|++|+++
T Consensus        24 l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            44444 35677777777777776553333    556777777777775   3333444433      2445555555555


Q ss_pred             cccCCC----cCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcC---------CCCC
Q 036717          137 NNNFDG----QIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNF---------SYLQ  203 (580)
Q Consensus       137 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~  203 (580)
                      +|.+.+    .++..+..+++|++|++++|.+++..+..+.                    ..+..+         ++|+
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~L~  162 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPPLR  162 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCCCC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCCCc
Confidence            555554    2333444455555555555554422222111                    111112         4555


Q ss_pred             EEEcccCcCCC-cCc---hhccCCCCCcEEEccCCcCcc-----ccC-CccCCCCCcEEEeeCCcCc----ccCChhccC
Q 036717          204 ILSMSKNLLEG-NIP---VQFNDLLDLEILNISENNLSG-----SMI-STLNLSSVEHLYLQNNALG----GSIPNTFFR  269 (580)
Q Consensus       204 ~L~l~~n~l~~-~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~~~~  269 (580)
                      +|++++|.+.. ..+   ..+..+++|++|++++|.+..     ..+ ....+++|++|++++|.++    ..+|..+..
T Consensus       163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~  242 (386)
T 2ca6_A          163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  242 (386)
T ss_dssp             EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence            55555555441 222   234445555555555555542     112 2225566666666666664    345666777


Q ss_pred             CCCccEEeCCCCcCccc----Cchhhcc--CcCcceeecccccccc----cCcccc-cCCCCCCEEEeeCCeecCccC
Q 036717          270 GSALETLDLRDNNFSGR----IPHQINE--HSNLRALLLRANYLQG----PIPHQL-CRLRKLGIMDLSHNRLYGSIP  336 (580)
Q Consensus       270 ~~~L~~L~l~~n~l~~~----~~~~~~~--~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~p  336 (580)
                      +++|+.|++++|.+++.    ++..+..  +++|+.|++++|.+++    .+|..+ .++++|+.|++++|++++..+
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            77788888888777654    4455533  7778888888887776    366665 557888888888888876553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=2.5e-23  Score=206.74  Aligned_cols=222  Identities=18%  Similarity=0.172  Sum_probs=127.2

Q ss_pred             CCCEEECCCCCCcccCchHHhhCC--CCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCcc-CChhHhhcCCCCcE
Q 036717            8 NLKYLDLSHNKLAGNFPTWLLENN--TKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGE-LPQNMGIVLQKLVY   83 (580)
Q Consensus         8 ~L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~   83 (580)
                      .++.++++++.+.+    ..+..+  ++++.|++++|.+++.... ..+++|++|++++|.+++. ++.. +..+++|++
T Consensus        48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSE
T ss_pred             hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCE
Confidence            46777777776652    223345  6777777777777664222 2556777777777766543 3333 345677777


Q ss_pred             EEcccCcCccccchhhhcCCCCCEEEcccC-cCccccchHHHhCCCCCcEEEcccc-cCCCc-CCccccCCC-CCCEEec
Q 036717           84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTN-NFAGELSQSLVTNCFSLIWLDLSNN-NFDGQ-IFPNYMNLT-QLQLLYL  159 (580)
Q Consensus        84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~l  159 (580)
                      |++++|.+++..+..++.+++|++|++++| .+++......+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            777777766666666777777777777776 4553222333456667777777766 66543 334455566 6666666


Q ss_pred             cCc--ccc-ccccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEEcccCc-CCCcCchhccCCCCCcEEEccCC
Q 036717          160 DNN--HFS-GKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILSMSKNL-LEGNIPVQFNDLLDLEILNISEN  234 (580)
Q Consensus       160 ~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n  234 (580)
                      ++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            666  333 2334444555666666666665 444444555555666666666553 11111123444555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=1.2e-22  Score=191.16  Aligned_cols=195  Identities=14%  Similarity=0.151  Sum_probs=100.8

Q ss_pred             CCcEEEcccCcCccccchhhhcCCCCCEEEcccCc-CccccchHHHhCCCCCcEEEccc-ccCCCcCCccccCCCCCCEE
Q 036717           80 KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN-FAGELSQSLVTNCFSLIWLDLSN-NNFDGQIFPNYMNLTQLQLL  157 (580)
Q Consensus        80 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  157 (580)
                      +|++|++++|++++..+..|+++++|++|++++|. ++ .++...+.++++|++|++++ |.++...+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            45555555555554444455555555555555554 44 44443445555555555555 55554444455555555555


Q ss_pred             eccCccccccccccccCCCCCC---EEEcccC-CCCCCCchhhhcCCCCC-EEEcccCcCCCcCchhccCCCCCcEEEcc
Q 036717          158 YLDNNHFSGKIKDGLLRSTELM---VLDISNN-RLSGHIPSWMGNFSYLQ-ILSMSKNLLEGNIPVQFNDLLDLEILNIS  232 (580)
Q Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  232 (580)
                      ++++|.+++ +|. +..+++|+   +|++++| .+++..+..|..+++|+ +|++++|.++...+..|.. ++|+.|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            555555553 333 44455554   5555555 55544444455555555 5555555555322333333 556666666


Q ss_pred             CCc-CccccCCcc-CC-CCCcEEEeeCCcCcccCChhccCCCCccEEeCCCC
Q 036717          233 ENN-LSGSMISTL-NL-SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDN  281 (580)
Q Consensus       233 ~n~-l~~~~~~~~-~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  281 (580)
                      +|. +++.++..+ .+ ++|++|++++|.+++. |..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            663 555544444 44 5666666666666532 222  3455666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=198.31  Aligned_cols=225  Identities=16%  Similarity=0.107  Sum_probs=137.6

Q ss_pred             CccEEEccCCCCCccCChhH--hhcCCCCcEEEcccCcCccccchhh--hcCCCCCEEEcccCcCccccc---hHHHhCC
Q 036717           55 GLLSLDISKNSFTGELPQNM--GIVLQKLVYMNISKNSFEGNIPSSI--AKMQGLRFLDVSTNNFAGELS---QSLVTNC  127 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~~~l  127 (580)
                      .++.+.+.++.++...-..+  +..+++|++|++++|.+++..|..+  +.+++|++|++++|.+++..+   ...+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46777777776653211111  1134678888888888887777777  778888888888888875433   2223467


Q ss_pred             CCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc--c--cccccCCCCCCEEEcccCCCCCCCch----hhhcC
Q 036717          128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK--I--KDGLLRSTELMVLDISNNRLSGHIPS----WMGNF  199 (580)
Q Consensus       128 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l  199 (580)
                      ++|++|++++|.+.+..+..|..+++|++|++++|++.+.  .  +..+..+++|++|++++|.++. ++.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence            7888888888888777777777888888888888876542  1  1223567777778888777762 232    24566


Q ss_pred             CCCCEEEcccCcCCCcCchhccCC---CCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEE
Q 036717          200 SYLQILSMSKNLLEGNIPVQFNDL---LDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETL  276 (580)
Q Consensus       200 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  276 (580)
                      ++|++|++++|.+.+..|..+..+   ++|++|++++|.++..+...  .++|++|++++|++++. |. +..+++|+.|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  299 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNL  299 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence            777777777777776656555544   45666666666555332222  14444445544444422 21 3334444444


Q ss_pred             eCCCCcCc
Q 036717          277 DLRDNNFS  284 (580)
Q Consensus       277 ~l~~n~l~  284 (580)
                      ++++|+++
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            44444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.1e-21  Score=191.69  Aligned_cols=192  Identities=23%  Similarity=0.325  Sum_probs=114.9

Q ss_pred             CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717           52 AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI  131 (580)
Q Consensus        52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  131 (580)
                      .+++|++|++++|.+. .++. + ..+++|++|++++|.+++..+  +..+++|++|++++|.++ .++.  +..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~~-~-~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIEG-V-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCC
T ss_pred             HcCCcCEEEeeCCCcc-Cchh-h-hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCCCC
Confidence            4455566666665555 3442 2 346666666666666664332  666666666666666665 3332  45566666


Q ss_pred             EEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCc
Q 036717          132 WLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL  211 (580)
Q Consensus       132 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  211 (580)
                      +|++++|.+++.  +.+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            666666666542  225666666666666666654332  5566666666666666664322  6666667777777776


Q ss_pred             CCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCc
Q 036717          212 LEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALG  260 (580)
Q Consensus       212 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~  260 (580)
                      +++..+  +..+++|++|++++|.+++..+ ...+++|++|++++|.++
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence            664332  5666677777777777666553 336677777777777775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=4.8e-22  Score=187.09  Aligned_cols=179  Identities=17%  Similarity=0.189  Sum_probs=113.2

Q ss_pred             CCCCEEEcccCcCccccchHHHhCCCCCcEEEccccc-CCCcCCccccCCCCCCEEeccC-ccccccccccccCCCCCCE
Q 036717          103 QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNN-FDGQIFPNYMNLTQLQLLYLDN-NHFSGKIKDGLLRSTELMV  180 (580)
Q Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~  180 (580)
                      ++|++|++++|+++ .++...+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++
T Consensus        31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            36777777777777 5555556677777777777775 6655555677777777777776 7777655566677777777


Q ss_pred             EEcccCCCCCCCchhhhcCCCCC---EEEcccC-cCCCcCchhccCCCCCc-EEEccCCcCccccCCccCCCCCcEEEee
Q 036717          181 LDISNNRLSGHIPSWMGNFSYLQ---ILSMSKN-LLEGNIPVQFNDLLDLE-ILNISENNLSGSMISTLNLSSVEHLYLQ  255 (580)
Q Consensus       181 L~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~  255 (580)
                      |++++|.+++ +|. +..+++|+   +|++++| .+++..+..|..+++|+ +|++++|.++..+...+..++|++|+++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            7777777764 444 66666666   7777776 66655555566666666 6666666666544444433555555555


Q ss_pred             CCc-CcccCChhccCC-CCccEEeCCCCcCc
Q 036717          256 NNA-LGGSIPNTFFRG-SALETLDLRDNNFS  284 (580)
Q Consensus       256 ~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~  284 (580)
                      +|. +++..+..|..+ ++|+.|++++|+++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            553 554444445555 55555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.9e-21  Score=184.27  Aligned_cols=179  Identities=22%  Similarity=0.283  Sum_probs=110.0

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      ..+.++++++.++ .+|..+   .++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence            3455666666665 555543   246666666666666666666666666666666666666 34444445666666666


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG  214 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  214 (580)
                      +++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            66666665555556666666666666666665555555666666666666666665555556666666666666666665


Q ss_pred             cCchhccCCCCCcEEEccCCcCcc
Q 036717          215 NIPVQFNDLLDLEILNISENNLSG  238 (580)
Q Consensus       215 ~~~~~~~~l~~L~~L~l~~n~l~~  238 (580)
                      ..+..|..+++|+.|++++|.+..
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCHHHHhCCCCCCEEEeeCCceeC
Confidence            555556666666666666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3.2e-22  Score=196.08  Aligned_cols=200  Identities=21%  Similarity=0.194  Sum_probs=113.8

Q ss_pred             CCCcEEEcccccCCCcCCccc--cCCCCCCEEeccCcccccccc----ccccCCCCCCEEEcccCCCCCCCchhhhcCCC
Q 036717          128 FSLIWLDLSNNNFDGQIFPNY--MNLTQLQLLYLDNNHFSGKIK----DGLLRSTELMVLDISNNRLSGHIPSWMGNFSY  201 (580)
Q Consensus       128 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  201 (580)
                      ++|++|++++|.+.+..+..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..|+.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            445555555555555555544  555555566665555554322    22334556666666666665555555556666


Q ss_pred             CCEEEcccCcCCCc--C--chhccCCCCCcEEEccCCcCccccCC---cc-CCCCCcEEEeeCCcCcccCChhccCC---
Q 036717          202 LQILSMSKNLLEGN--I--PVQFNDLLDLEILNISENNLSGSMIS---TL-NLSSVEHLYLQNNALGGSIPNTFFRG---  270 (580)
Q Consensus       202 L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~---~~-~~~~L~~L~l~~n~l~~~~~~~~~~~---  270 (580)
                      |++|++++|++.+.  .  +..+..+++|++|++++|.++..+..   .+ .+++|++|++++|.+++..|..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            66666666655421  1  12234556666666666666533221   11 45666666666666665555555554   


Q ss_pred             CCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeec
Q 036717          271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY  332 (580)
Q Consensus       271 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  332 (580)
                      ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |. +..+++|+.|++++|+++
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            46777777777776 4555443  5677777777777643 22 456677777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2.7e-21  Score=189.00  Aligned_cols=193  Identities=19%  Similarity=0.274  Sum_probs=138.7

Q ss_pred             cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717           77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL  156 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  156 (580)
                      .+++|++|++++|.++. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++.  +.+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            45677888888887774 34 5777788888888888777 4554  56777888888888877653  35777788888


Q ss_pred             EeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcC
Q 036717          157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL  236 (580)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  236 (580)
                      |++++|.+++. + .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            88888877753 2 27777788888888887775433  7777788888888887774333  77777888888888877


Q ss_pred             ccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717          237 SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG  285 (580)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  285 (580)
                      ++.++ ...+++|++|++++|.+++..  .+..+++|+.|++++|++++
T Consensus       186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            76554 336777888888888777544  36777788888888887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=6e-21  Score=190.25  Aligned_cols=243  Identities=19%  Similarity=0.184  Sum_probs=150.0

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcE-EEc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIW-LDL  135 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L  135 (580)
                      ++++.++++++ ++|..+   .+++++|+|++|+|+.+.+.+|+++++|++|+|++|.+.+.++...|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56677777777 677655   3567777777777775545567777777777777777765666666666666554 444


Q ss_pred             ccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc
Q 036717          136 SNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN  215 (580)
Q Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  215 (580)
                      +.|+++...+..|..+++|++|++++|++....+..+....++..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            556666555555666666666666666665443333334444444444332                       233323


Q ss_pred             CchhccCCC-CCcEEEccCCcCccccCCccCCCCCcEEEeeC-CcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc
Q 036717          216 IPVQFNDLL-DLEILNISENNLSGSMISTLNLSSVEHLYLQN-NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE  293 (580)
Q Consensus       216 ~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  293 (580)
                      .+..|..+. .++.|++++|.++.++...+...+|+++++.+ |.++...+..|..+++|++|++++|+++...+..+  
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--  222 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL--  222 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence            333444443 46667777777777666666666777777764 55654444567788888888888888884433333  


Q ss_pred             CcCcceeecccccccccCcccccCCCCCCEEEeeCCe
Q 036717          294 HSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR  330 (580)
Q Consensus       294 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  330 (580)
                       .+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus       223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS  257 (350)
T ss_dssp             -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred             -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence             445555544443233555 37778889998887543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=1e-20  Score=188.55  Aligned_cols=224  Identities=18%  Similarity=0.154  Sum_probs=158.5

Q ss_pred             CEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccc-ccccCCCCCCE-EEc
Q 036717          106 RFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK-DGLLRSTELMV-LDI  183 (580)
Q Consensus       106 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~L  183 (580)
                      ++++.+++.++ ++|..+   .+++++|+|++|+|+...+.+|.++++|++|++++|.+.+.++ ..|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45666666666 666543   2466777777777765555567777777777777777654443 45667777664 555


Q ss_pred             ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccC-CcCccccCCcc-C-CCCCcEEEeeCCcCc
Q 036717          184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE-NNLSGSMISTL-N-LSSVEHLYLQNNALG  260 (580)
Q Consensus       184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~-~-~~~L~~L~l~~n~l~  260 (580)
                      +.|++....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+...+...+ . ...++.|++++|.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            66777766677788888888888888888766666677777888898865 56777766655 3 357899999999999


Q ss_pred             ccCChhccCCCCccEEeCCC-CcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccCh
Q 036717          261 GSIPNTFFRGSALETLDLRD-NNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA  337 (580)
Q Consensus       261 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  337 (580)
                      . ++.......+|+++++++ |.++...+..|..+++|++|++++|+++...+..+   .+|+.|.+.++.--..+|.
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC
T ss_pred             C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC
Confidence            5 444444567899999986 56664444678999999999999999996555444   4566666655544446663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=4.3e-21  Score=177.62  Aligned_cols=158  Identities=21%  Similarity=0.242  Sum_probs=127.1

Q ss_pred             cEEeCCCCcCcccCchhhccCcCcceeecccccccccCc-ccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCc
Q 036717          274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP-HQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL  352 (580)
Q Consensus       274 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~  352 (580)
                      +.+++++|.++ .+|..+.  ..++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            46777777766 3454432  345777777777776543 44677888888888888877544433322           


Q ss_pred             cccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccc
Q 036717          353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD  432 (580)
Q Consensus       353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  432 (580)
                                                                              +++|+.|+|++|.+++..+..|..
T Consensus        80 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~  103 (220)
T 2v70_A           80 --------------------------------------------------------ASGVNEILLTSNRLENVQHKMFKG  103 (220)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTT
T ss_pred             --------------------------------------------------------CCCCCEEECCCCccCccCHhHhcC
Confidence                                                                    678888999999998888888999


Q ss_pred             ccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCC
Q 036717          433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDK  501 (580)
Q Consensus       433 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  501 (580)
                      +++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|+++|.|+..
T Consensus       104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            999999999999999988999999999999999999999988999999999999999999999988743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=2.3e-20  Score=171.46  Aligned_cols=179  Identities=21%  Similarity=0.196  Sum_probs=93.9

Q ss_pred             EEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcC
Q 036717           36 VLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF  115 (580)
Q Consensus        36 ~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  115 (580)
                      .++++++.++.++ ....++|++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|.+
T Consensus        11 ~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVP-TGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCC-SCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCC-CCCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            3444444444331 122334555555555555 34443334555566666666655544444455556666666666655


Q ss_pred             ccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchh
Q 036717          116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW  195 (580)
Q Consensus       116 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  195 (580)
                      + .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+     
T Consensus        89 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----  162 (208)
T 2o6s_A           89 Q-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----  162 (208)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred             C-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence            5 4444444555556666666665554444445555666666666665554444445555566666666654432     


Q ss_pred             hhcCCCCCEEEcccCcCCCcCchhccCCC
Q 036717          196 MGNFSYLQILSMSKNLLEGNIPVQFNDLL  224 (580)
Q Consensus       196 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  224 (580)
                        .+++|+.|+++.|.+++.+|..++.++
T Consensus       163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 --TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             --CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             --CCCCHHHHHHHHHhCCceeeccCcccc
Confidence              234555555566665555555555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=6.1e-21  Score=176.61  Aligned_cols=157  Identities=21%  Similarity=0.276  Sum_probs=128.1

Q ss_pred             cEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCcc
Q 036717          274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLY  353 (580)
Q Consensus       274 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~  353 (580)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..+..            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            46677777776 4554443  56777888888777666667777888888888888887555554432            


Q ss_pred             ccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccc
Q 036717          354 QLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDL  433 (580)
Q Consensus       354 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  433 (580)
                                                                             +++|+.|+|++|.+++..+..|..+
T Consensus        79 -------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l  103 (220)
T 2v9t_B           79 -------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGL  103 (220)
T ss_dssp             -------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             -------------------------------------------------------CcCCCEEECCCCcCCccCHhHccCC
Confidence                                                                   6788888888888886666778999


Q ss_pred             cCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          434 QNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       434 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.|.|+-
T Consensus       104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            9999999999999998899999999999999999999988888899999999999999999998763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=4.6e-20  Score=169.46  Aligned_cols=177  Identities=18%  Similarity=0.234  Sum_probs=79.6

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      +.++.+++.++ .+|..+   .++|++|++++|++++..+..|+.+++|++|++++|.++ .++...+..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence            34555555554 444332   235555555555555444444455555555555555554 3333333444444444444


Q ss_pred             cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcC
Q 036717          137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNI  216 (580)
Q Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  216 (580)
                      +|.+++..                        +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus        85 ~n~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A           85 TNQLQSLP------------------------NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             SSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCccC------------------------HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence            44444332                        233334444444444444444333333444444444444444444333


Q ss_pred             chhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhcc
Q 036717          217 PVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFF  268 (580)
Q Consensus       217 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  268 (580)
                      +..|..+++|+.|++++|.+.+      .++.|++|++..|.+++.+|..++
T Consensus       141 ~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          141 DGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             HHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccCc
Confidence            3334444444444444443322      223444444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=4.2e-20  Score=184.86  Aligned_cols=180  Identities=26%  Similarity=0.223  Sum_probs=135.0

Q ss_pred             cEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhc-cCcCcceeecccccccccCcccccCCCCCCEEEeeC
Q 036717          250 EHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN-EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSH  328 (580)
Q Consensus       250 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  328 (580)
                      +.++++++.++ .+|..+.  +.++.|++++|++++..+..+. .+++|+.|++++|.+++..+..|..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            45666666666 3454332  3567777777777766666666 777788888888877776667778888888888888


Q ss_pred             CeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccc
Q 036717          329 NRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI  408 (580)
Q Consensus       329 n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (580)
                      |++++..+..+..                                                                   
T Consensus        98 N~l~~~~~~~~~~-------------------------------------------------------------------  110 (361)
T 2xot_A           98 NHLHTLDEFLFSD-------------------------------------------------------------------  110 (361)
T ss_dssp             SCCCEECTTTTTT-------------------------------------------------------------------
T ss_pred             CcCCcCCHHHhCC-------------------------------------------------------------------
Confidence            8876433322221                                                                   


Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccc---cCcccCCEEECCCCcccccCchhhcCCCC--
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESF---SNLKMIESLDLSHNKLNGQIPPQLTELHS--  483 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--  483 (580)
                      +++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..|   ..+++|+.|+|++|+|++..+..+..++.  
T Consensus       111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~  190 (361)
T 2xot_A          111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV  190 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred             CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence            6788888888888888888889999999999999999996555555   56899999999999999777778888887  


Q ss_pred             CCEEeccCCcccccCC
Q 036717          484 LSKFDVSYNNLSGPIP  499 (580)
Q Consensus       484 L~~L~Ls~N~l~~~~p  499 (580)
                      ++.|+|++|++.|.|.
T Consensus       191 l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          191 KNGLYLHNNPLECDCK  206 (361)
T ss_dssp             HTTEECCSSCEECCHH
T ss_pred             cceEEecCCCccCCcC
Confidence            4889999999998775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.4e-19  Score=189.71  Aligned_cols=180  Identities=23%  Similarity=0.326  Sum_probs=78.8

Q ss_pred             CCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEccc
Q 036717           33 KLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVST  112 (580)
Q Consensus        33 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  112 (580)
                      +++.|+|++|.+++++. ...++|++|++++|.++ .+|    ..+++|++|++++|++++ +|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPD-NLPPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            44444444444444211 12244444444444444 344    123444444444444443 333 322  444444444


Q ss_pred             CcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCC
Q 036717          113 NNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI  192 (580)
Q Consensus       113 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  192 (580)
                      |.+++ +|.    .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ .+
T Consensus       130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            44442 333    34444455555444443 222   33445555555554443 333 32  44555555555444 23


Q ss_pred             chhhhcCCCC-------CEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcccc
Q 036717          193 PSWMGNFSYL-------QILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM  240 (580)
Q Consensus       193 ~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  240 (580)
                      |. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++..
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            33 222  33       55555555554 34444444555555555555554433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.1e-19  Score=190.51  Aligned_cols=185  Identities=24%  Similarity=0.287  Sum_probs=96.8

Q ss_pred             CCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEc
Q 036717          104 GLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI  183 (580)
Q Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  183 (580)
                      +|+.|++++|.++ .+|..+   .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            6666666666666 355533   255666666666665 333   335666666666666664 444 433  6666666


Q ss_pred             ccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccC
Q 036717          184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI  263 (580)
Q Consensus       184 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  263 (580)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.+++.+.  +. ++|+.|++++|.++ .+
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-SC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-ch
Confidence            6666654 333   45566666666666653 333   34555555555555555333  22 55555555555555 33


Q ss_pred             ChhccCCCCc-------cEEeCCCCcCcccCchhhccCcCcceeecccccccccCccccc
Q 036717          264 PNTFFRGSAL-------ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC  316 (580)
Q Consensus       264 ~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  316 (580)
                      |. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|.+++.+|..+.
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            33 322  34       55555555554 3444444455555555555555444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=1e-19  Score=169.49  Aligned_cols=161  Identities=23%  Similarity=0.248  Sum_probs=129.0

Q ss_pred             ccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCc
Q 036717          273 LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL  352 (580)
Q Consensus       273 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~  352 (580)
                      .+.++.+++.++ .+|..+.  ++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            456777777766 4554433  67888888888888777777888888888888888875322222221           


Q ss_pred             cccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccc
Q 036717          353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD  432 (580)
Q Consensus       353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  432 (580)
                                                                              +++|+.|+|++|++++..+..|..
T Consensus        87 --------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~  110 (229)
T 3e6j_A           87 --------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDR  110 (229)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             --------------------------------------------------------CCCcCEEECCCCcCCccChhHhCc
Confidence                                                                    678888999999998777788899


Q ss_pred             ccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCCCCccc
Q 036717          433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQF  504 (580)
Q Consensus       433 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  504 (580)
                      +++|++|+|++|.++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|+++|.|+....+
T Consensus       111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l  181 (229)
T 3e6j_A          111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYL  181 (229)
T ss_dssp             CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHH
T ss_pred             chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHH
Confidence            999999999999999 78888999999999999999999887788999999999999999999988744333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=4.7e-19  Score=171.45  Aligned_cols=168  Identities=21%  Similarity=0.325  Sum_probs=77.9

Q ss_pred             CCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEe
Q 036717           79 QKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLY  158 (580)
Q Consensus        79 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  158 (580)
                      ++|++|++++|.++.. + .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++  .+.+..+++|++|+
T Consensus        46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEE
T ss_pred             CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEE
Confidence            3444444444444322 1 2344444444444444444 2222  2344444444444444432  12244444444444


Q ss_pred             ccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcc
Q 036717          159 LDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG  238 (580)
Q Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  238 (580)
                      +++|.+++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            444444432  2344455555555555555432  334555555555555555553322  5555555555555555554


Q ss_pred             ccCCccCCCCCcEEEeeCCcCc
Q 036717          239 SMISTLNLSSVEHLYLQNNALG  260 (580)
Q Consensus       239 ~~~~~~~~~~L~~L~l~~n~l~  260 (580)
                      .. ....+++|+.|++++|.++
T Consensus       193 l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          193 LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             Ch-hhccCCCCCEEECcCCccc
Confidence            32 1225556666666666555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.3e-18  Score=168.28  Aligned_cols=189  Identities=21%  Similarity=0.294  Sum_probs=136.7

Q ss_pred             EEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcC
Q 036717           36 VLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF  115 (580)
Q Consensus        36 ~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  115 (580)
                      .+.+..+.+++......+++|+.|++++|.+. .++. + ..+++|++|++++|++++..+  ++.+++|++|++++|.+
T Consensus        28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHHTTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHHhcCCCcccccchhhcCcccEEEccCCCcc-cChh-H-hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            34455555554322335667777777777776 4443 2 357788888888888875443  77788888888888887


Q ss_pred             ccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchh
Q 036717          116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW  195 (580)
Q Consensus       116 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  195 (580)
                      + .++.  +..+++|++|++++|.+++.  +.+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+  
T Consensus       103 ~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--  173 (291)
T 1h6t_A          103 K-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  173 (291)
T ss_dssp             C-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             C-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence            7 4444  57778888888888887753  5677788888888888888754  567788888888888888886544  


Q ss_pred             hhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcccc
Q 036717          196 MGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM  240 (580)
Q Consensus       196 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  240 (580)
                      +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+...+
T Consensus       174 l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence            78888888888888888743 3 4788888888888888877643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=5.9e-19  Score=187.04  Aligned_cols=191  Identities=20%  Similarity=0.280  Sum_probs=111.2

Q ss_pred             CcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccC
Q 036717           34 LEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTN  113 (580)
Q Consensus        34 L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  113 (580)
                      +..+.++.+.+.+......+++|+.|++++|.+. .++. + ..+++|+.|+|++|.+++..|  +..+++|++|+|++|
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~-l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT-G-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH-H-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            3334444444444322234555666666666655 3432 2 346666666666666664433  666666666666666


Q ss_pred             cCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCc
Q 036717          114 NFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIP  193 (580)
Q Consensus       114 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  193 (580)
                      .+. .++.  +..+++|++|+|++|.+.+.  +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|
T Consensus        98 ~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           98 KIK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             CCC-CCTT--STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCC-CChh--hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            665 3332  45666666666666666542  3455666666666666666643  445666666666666666665444


Q ss_pred             hhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCcccc
Q 036717          194 SWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSM  240 (580)
Q Consensus       194 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  240 (580)
                        +..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|.+.+.+
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence              66666666666666666643  24666666666666666665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=6.2e-19  Score=176.37  Aligned_cols=175  Identities=22%  Similarity=0.245  Sum_probs=104.3

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhh-cCCCCCEEEcccCcCccccchHHHhCCCCCcEEEc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIA-KMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDL  135 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  135 (580)
                      +.++++++.++ .+|..+   .+.++.|+|++|++++..+..+. .+++|++|+|++|.++ .++...+.++++|++|+|
T Consensus        21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence            45666666666 555543   24466666666666655555555 6666666666666666 444444566666666666


Q ss_pred             ccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhh---hcCCCCCEEEcccCcC
Q 036717          136 SNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM---GNFSYLQILSMSKNLL  212 (580)
Q Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l  212 (580)
                      ++|+++...+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|   ..+++|+.|++++|.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            6666665555556666666666666666665556666666666666666666664433333   4466666666666666


Q ss_pred             CCcCchhccCCCC--CcEEEccCCcC
Q 036717          213 EGNIPVQFNDLLD--LEILNISENNL  236 (580)
Q Consensus       213 ~~~~~~~~~~l~~--L~~L~l~~n~l  236 (580)
                      +...+..+..++.  ++.|++++|.+
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CccCHHHhhhccHhhcceEEecCCCc
Confidence            6444445555544  24555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2.1e-18  Score=159.48  Aligned_cols=151  Identities=17%  Similarity=0.287  Sum_probs=78.0

Q ss_pred             EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccc-hhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIP-SSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      .+++++|.++ .+|..+   .+.+++|++++|++++..+ ..|..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus        15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence            4444444444 344432   2334455555555554322 23455555555555555554 3333334455555555555


Q ss_pred             cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717          137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  213 (580)
                      +|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            55555444444555555555555555555555555555555555555555555555555555556666666655554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=1.8e-18  Score=183.28  Aligned_cols=190  Identities=18%  Similarity=0.218  Sum_probs=155.8

Q ss_pred             CCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEccc
Q 036717            9 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISK   88 (580)
Q Consensus         9 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~   88 (580)
                      +..+.++.+.+.+.++   ...+++|+.|++++|.+..++....+++|+.|+|++|.+.+ ++.  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcC
Confidence            3445667777774433   34688899999999998887655688999999999999984 444  45799999999999


Q ss_pred             CcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccc
Q 036717           89 NSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKI  168 (580)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (580)
                      |.+++ +| .+..+++|++|+|++|.+. .++.  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..
T Consensus        97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           97 NKIKD-LS-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCC-Ch-hhccCCCCCEEEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            99985 33 7889999999999999998 4543  57899999999999999864  67889999999999999998765


Q ss_pred             cccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc
Q 036717          169 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN  215 (580)
Q Consensus       169 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  215 (580)
                      |  +..+++|+.|+|++|.+.+. + .+..+++|+.|++++|.+.+.
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             h--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            5  88899999999999999854 3 588899999999999988754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3.6e-18  Score=157.93  Aligned_cols=151  Identities=22%  Similarity=0.283  Sum_probs=72.4

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      +.++++++.++ .+|..+   .++++.|++++|.+++..+..|..+++|++|+|++|.++ .++...+.++++|++|+|+
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence            34555555555 455433   245555555555555444445555555555555555555 2322223445555555555


Q ss_pred             cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcC
Q 036717          137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLL  212 (580)
Q Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  212 (580)
                      +|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            5555433333344444555555555444444444444444444444444444443333444444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=6.7e-18  Score=157.23  Aligned_cols=154  Identities=18%  Similarity=0.221  Sum_probs=110.0

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      .-+.++.+++.++ .+|..+   .++|++|++++|.+++..|..|..+++|++|+|++|.+. .++...+..+++|++|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence            3566777777776 677654   377888888888888777778888888888888888876 66666667777777777


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG  214 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  214 (580)
                      +++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+..
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            7777777655556677777777777777776 556666666777777777777665555556666666666666666553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=9.4e-19  Score=172.80  Aligned_cols=101  Identities=18%  Similarity=0.082  Sum_probs=49.7

Q ss_pred             CCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCcc-EEeCCCCcCcccCchhhccCcCccee
Q 036717          223 LLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALE-TLDLRDNNFSGRIPHQINEHSNLRAL  300 (580)
Q Consensus       223 l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L  300 (580)
                      +++|+.+++++|.++.++...+ .+++|+++++.+| ++.+.+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            3444444444444444444433 4444444444444 3334444455555555 555554 4443444555555555555


Q ss_pred             ecccccccccCcccccCCCCCCEEE
Q 036717          301 LLRANYLQGPIPHQLCRLRKLGIMD  325 (580)
Q Consensus       301 ~l~~n~l~~~~~~~~~~l~~L~~L~  325 (580)
                      +++.|.++...+.+|.++++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            5555555544445555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=8.6e-19  Score=158.47  Aligned_cols=92  Identities=25%  Similarity=0.390  Sum_probs=82.0

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD  488 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  488 (580)
                      +++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            67788888888888888888899999999999999999988888899999999999999999988899999999999999


Q ss_pred             ccCCcccccCCC
Q 036717          489 VSYNNLSGPIPD  500 (580)
Q Consensus       489 Ls~N~l~~~~p~  500 (580)
                      +++|+++|.++.
T Consensus       133 L~~N~l~c~c~l  144 (192)
T 1w8a_A          133 LASNPFNCNCHL  144 (192)
T ss_dssp             CTTCCBCCSGGG
T ss_pred             eCCCCccCcCcc
Confidence            999999988874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=3.3e-18  Score=155.45  Aligned_cols=153  Identities=16%  Similarity=0.195  Sum_probs=111.5

Q ss_pred             hCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEE
Q 036717           29 ENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFL  108 (580)
Q Consensus        29 ~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  108 (580)
                      ..+++|++|++++|.++.++....+++|++|++++|.+. .++ .+ ..+++|++|++++|++++..+..++.+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            356778888888887776554446778888888888665 333 33 367888888888888887677788888888888


Q ss_pred             EcccCcCccccchHHHhCCCCCcEEEccccc-CCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCC
Q 036717          109 DVSTNNFAGELSQSLVTNCFSLIWLDLSNNN-FDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR  187 (580)
Q Consensus       109 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  187 (580)
                      ++++|.+++..+.. +..+++|++|++++|. ++. ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|+
T Consensus       118 ~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          118 DISHSAHDDSILTK-INTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EecCCccCcHhHHH-HhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            88888887545544 4778888888888887 543 33 577888888888888888753 3 57778888888888887


Q ss_pred             CC
Q 036717          188 LS  189 (580)
Q Consensus       188 l~  189 (580)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            65

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=7.7e-18  Score=153.01  Aligned_cols=152  Identities=15%  Similarity=0.240  Sum_probs=85.4

Q ss_pred             cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717           77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL  156 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  156 (580)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++  .+..+++|++|++++|.+++..+..+..+++|++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3456666666666665 334 4566666666666666544 232  2355666666666666665545555666666666


Q ss_pred             EeccCccccccccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCc
Q 036717          157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN  235 (580)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  235 (580)
                      |++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.+++. + .+..+++|++|++++|.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            6666666665555556666666666666665 44 333 455566666666666665532 2 45555555555555555


Q ss_pred             Cc
Q 036717          236 LS  237 (580)
Q Consensus       236 l~  237 (580)
                      +.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=1.8e-17  Score=149.70  Aligned_cols=155  Identities=26%  Similarity=0.319  Sum_probs=115.4

Q ss_pred             cEEeCCCCcCcccCchhhccCcCcceeecccccccccCcc-cccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCc
Q 036717          274 ETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPH-QLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL  352 (580)
Q Consensus       274 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~  352 (580)
                      +.+++++|+++ .+|..+..  ++++|++++|.+++..+. .+..+++|+.|++++|.+++..|..+..           
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            57777777775 55554432  778888888888765554 4778888888888888887666655433           


Q ss_pred             cccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccccc
Q 036717          353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGD  432 (580)
Q Consensus       353 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  432 (580)
                                                                              +++|+.|+|++|++++..+..|.+
T Consensus        77 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~  100 (192)
T 1w8a_A           77 --------------------------------------------------------ASHIQELQLGENKIKEISNKMFLG  100 (192)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTT
T ss_pred             --------------------------------------------------------cccCCEEECCCCcCCccCHHHhcC
Confidence                                                                    678888999999999888888999


Q ss_pred             ccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchh-hcCCCCCCEEeccCCcccccCCC
Q 036717          433 LQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       433 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      +++|++|+|++|++++.+|..|..+++|++|+|++|.+.+..+-. +.  ..++...+..+...|..|.
T Consensus       101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred             CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCCh
Confidence            999999999999999999999999999999999999998765522 11  1122234455566665554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.4e-17  Score=156.83  Aligned_cols=168  Identities=22%  Similarity=0.306  Sum_probs=107.4

Q ss_pred             CCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEcc
Q 036717          153 QLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNIS  232 (580)
Q Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  232 (580)
                      ++..++++++.+++..  .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3444444445444222  34445555555555555552 23 35555666666666666553332  5566666666666


Q ss_pred             CCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCc
Q 036717          233 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIP  312 (580)
Q Consensus       233 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  312 (580)
                      +|.+++.+... . ++|++|++++|.+++.  ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++.  
T Consensus        94 ~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           94 RNRLKNLNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SSCCSCCTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CCccCCcCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence            66665543322 2 6777777777777743  3577788888888888888754 3 577788888888888888865  


Q ss_pred             ccccCCCCCCEEEeeCCeecCc
Q 036717          313 HQLCRLRKLGIMDLSHNRLYGS  334 (580)
Q Consensus       313 ~~~~~l~~L~~L~l~~n~l~~~  334 (580)
                      ..+..+++|+.|++++|++++.
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEECC
T ss_pred             HHhccCCCCCEEeCCCCcccCC
Confidence            6677888888888888888744

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=3.4e-17  Score=155.77  Aligned_cols=147  Identities=21%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             cCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCE
Q 036717           77 VLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQL  156 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  156 (580)
                      .+++|++|++++|.++. ++ .++.+++|++|++++|.++ .++.  +..+++|++|++++|++++. +. +.. ++|++
T Consensus        39 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~  110 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSR  110 (263)
T ss_dssp             HHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCE
T ss_pred             hcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCCc-Cc-ccc-CcccE
Confidence            34555555555555542 22 4455555555555555554 2333  34555555555555555432 11 112 45555


Q ss_pred             EeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcC
Q 036717          157 LYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL  236 (580)
Q Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  236 (580)
                      |++++|.+++.  +.+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+
T Consensus       111 L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          111 LFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             EEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            55555555432  2344455555555555555432 2 344445555555555544433  3344444444444444443


Q ss_pred             c
Q 036717          237 S  237 (580)
Q Consensus       237 ~  237 (580)
                      .
T Consensus       185 ~  185 (263)
T 1xeu_A          185 V  185 (263)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=3.6e-19  Score=187.54  Aligned_cols=184  Identities=20%  Similarity=0.212  Sum_probs=142.1

Q ss_pred             CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCc-------------CcccCchhhccCcCcceee-ccccccccc
Q 036717          245 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNN-------------FSGRIPHQINEHSNLRALL-LRANYLQGP  310 (580)
Q Consensus       245 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~~~~L~~L~-l~~n~l~~~  310 (580)
                      .++.|+.|++++|.++ .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+...
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            4667777788888776 667777777788888876654             4556677777777777777 555533211


Q ss_pred             Ccc-----cccC--CCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccch
Q 036717          311 IPH-----QLCR--LRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESD  383 (580)
Q Consensus       311 ~~~-----~~~~--l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (580)
                      ...     .+..  ...|+.|++++|.+++ +|. +..                                          
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~------------------------------------------  461 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ------------------------------------------  461 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG------------------------------------------
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc------------------------------------------
Confidence            000     0110  1257888888888874 453 322                                          


Q ss_pred             hhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEE
Q 036717          384 LRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESL  463 (580)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  463 (580)
                                               +++|+.|+|++|.++ .+|..|+.+++|+.|+|++|.+++ +| .++++++|+.|
T Consensus       462 -------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L  513 (567)
T 1dce_A          462 -------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQEL  513 (567)
T ss_dssp             -------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEE
T ss_pred             -------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEE
Confidence                                     678999999999999 889999999999999999999996 67 89999999999


Q ss_pred             ECCCCcccccC-chhhcCCCCCCEEeccCCcccccCCCC
Q 036717          464 DLSHNKLNGQI-PPQLTELHSLSKFDVSYNNLSGPIPDK  501 (580)
Q Consensus       464 ~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~  501 (580)
                      +|++|+|++.. |..+..+++|+.|+|++|++++.+|..
T Consensus       514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            99999999887 999999999999999999999877643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=4.1e-19  Score=187.14  Aligned_cols=119  Identities=24%  Similarity=0.279  Sum_probs=60.2

Q ss_pred             CCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccC
Q 036717          154 LQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE  233 (580)
Q Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (580)
                      |+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            5555555555553 333 555555555555555555 445555555555555555555553 33 455555555555555


Q ss_pred             CcCcccc-CCcc-CCCCCcEEEeeCCcCcccCCh---hccCCCCccEEe
Q 036717          234 NNLSGSM-ISTL-NLSSVEHLYLQNNALGGSIPN---TFFRGSALETLD  277 (580)
Q Consensus       234 n~l~~~~-~~~~-~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~  277 (580)
                      |.+++.. +..+ .+++|+.|++++|.+++..+.   .+..+++|+.|+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            5555543 2222 555555555555555543221   122345555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1.9e-17  Score=163.39  Aligned_cols=259  Identities=12%  Similarity=0.050  Sum_probs=144.8

Q ss_pred             CCCCcEEEccCCcccCCCCC---CCCCCccEEEccCCCCCcc-CChhHhhcCCCCcEEEcccCcCccccchhhhc-----
Q 036717           31 NTKLEVLYLINNSFSGFQLT---GAQHGLLSLDISKNSFTGE-LPQNMGIVLQKLVYMNISKNSFEGNIPSSIAK-----  101 (580)
Q Consensus        31 l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----  101 (580)
                      +.++++|.++++ +......   ..+++|+.|||++|++... .+..   .++.++.+.+..+.+   .+.+|.+     
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~   96 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV   96 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence            456777777754 1111010   1256777777777776510 1111   122234444444432   2345666     


Q ss_pred             ---CCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccc----cccccccccC
Q 036717          102 ---MQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHF----SGKIKDGLLR  174 (580)
Q Consensus       102 ---l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~l~~  174 (580)
                         +++|+.+++.+ .++ .++...|.+|++|+.|++++|.+....+.+|.++.++..+....+..    .......|..
T Consensus        97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence               77777777777 666 67777777777777777777777666666777766666666544211    1112223333


Q ss_pred             CCCCC--------------------------EEEcccCCCCCCCchhh-hcCCCCCEEEcccCcCCCcCchhccCCCCCc
Q 036717          175 STELM--------------------------VLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLE  227 (580)
Q Consensus       175 l~~L~--------------------------~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  227 (580)
                      +..|+                          .+.+.++-.. .....+ ..+++|+.+++++|.++...+.+|.++.+|+
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            33333                          2222221100 000011 1256677777776666655556666666777


Q ss_pred             EEEccCCcCccccCCcc-CCCCCc-EEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceee
Q 036717          228 ILNISENNLSGSMISTL-NLSSVE-HLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL  301 (580)
Q Consensus       228 ~L~l~~n~l~~~~~~~~-~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  301 (580)
                      .+++.+| ++.+....| ++++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|+++...+.+|.++++|+.++
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            7777665 555555555 666666 666666 55545556666666777777666666655556666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=2.3e-17  Score=148.93  Aligned_cols=92  Identities=25%  Similarity=0.326  Sum_probs=84.9

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD  488 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  488 (580)
                      +++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|+.|+|++|+|++..+..|..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            67888899999999988888899999999999999999998889999999999999999999987777899999999999


Q ss_pred             ccCCcccccCCC
Q 036717          489 VSYNNLSGPIPD  500 (580)
Q Consensus       489 Ls~N~l~~~~p~  500 (580)
                      +++|++.|.|..
T Consensus       133 L~~N~~~C~c~l  144 (193)
T 2wfh_A          133 IGANPLYCDCNM  144 (193)
T ss_dssp             CCSSCEECSGGG
T ss_pred             eCCCCeecCCcC
Confidence            999999998863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=7.7e-16  Score=155.10  Aligned_cols=264  Identities=9%  Similarity=0.052  Sum_probs=176.6

Q ss_pred             CCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCE
Q 036717           30 NNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRF  107 (580)
Q Consensus        30 ~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  107 (580)
                      .+..++.+.+.++ ++.+...  ..+ +|+.+++..+ ++ .++...|.++ +|+.+.+.. .++.+.+.+|.+|++|+.
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            3455666665542 2222111  122 5666666555 44 5666666553 577777765 566556667777777777


Q ss_pred             EEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCC
Q 036717          108 LDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR  187 (580)
Q Consensus       108 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  187 (580)
                      +++.+|.++ .++...|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.
T Consensus       185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            777777776 67766665 577777777643 55555667777777887777764 44455556665 677888774 34


Q ss_pred             CCCCCchhhhcCCCCCEEEcccCcCC-----CcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcc
Q 036717          188 LSGHIPSWMGNFSYLQILSMSKNLLE-----GNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGG  261 (580)
Q Consensus       188 l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~  261 (580)
                      +......+|.++++|+.+++.++.+.     ...+.+|.+|++|+.+++. +.++......+ ++++|+.+.+..+ ++.
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            55455667778888888888776654     3556778888888888888 44776666666 6788888888554 665


Q ss_pred             cCChhccCCCCccEEeCCCCcCcccCchhhccCc-Ccceeeccccccc
Q 036717          262 SIPNTFFRGSALETLDLRDNNFSGRIPHQINEHS-NLRALLLRANYLQ  308 (580)
Q Consensus       262 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~  308 (580)
                      ....+|.++ +|+.+++.+|.+....+..|.+++ +++.+.+..+.+.
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            667788888 888888888877755566677664 6788888776544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=4e-15  Score=149.86  Aligned_cols=271  Identities=15%  Similarity=0.131  Sum_probs=202.6

Q ss_pred             CCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEE
Q 036717          151 LTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILN  230 (580)
Q Consensus       151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  230 (580)
                      +..++.+.+.+ .++.+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+......+|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            35666666654 3444555666664 6888887665 554555667764 688888875 55556677888888888888


Q ss_pred             ccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccccc
Q 036717          231 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP  310 (580)
Q Consensus       231 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  310 (580)
                      +++|.++..+...+.+.+|+.+.+..+ ++.....+|..|++|+.+++..+ ++.....+|.. .+|+.+.+. +.++..
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI  262 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred             cCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence            888888888888887788999998744 66677788999999999999875 55455666766 789999994 556666


Q ss_pred             CcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccc
Q 036717          311 IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ  390 (580)
Q Consensus       311 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (580)
                      ...+|.+|++|+.+++.+|.+.......+...                                                
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~------------------------------------------------  294 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY------------------------------------------------  294 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTT------------------------------------------------
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHH------------------------------------------------
Confidence            77889999999999999887641100000000                                                


Q ss_pred             cEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcc
Q 036717          391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKL  470 (580)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  470 (580)
                                  .|.  .+++|+.+++. +.++.....+|.+|++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+
T Consensus       295 ------------aF~--~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          295 ------------CLE--GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             ------------TTT--TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             ------------Hhh--CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence                        011  17788999998 4587777889999999999999655 776778899999 999999999999


Q ss_pred             cccCchhhcCCC-CCCEEeccCCccc
Q 036717          471 NGQIPPQLTELH-SLSKFDVSYNNLS  495 (580)
Q Consensus       471 ~~~~p~~l~~l~-~L~~L~Ls~N~l~  495 (580)
                      ....+..|.+++ .++.|.+..+.+.
T Consensus       358 ~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          358 PQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             cccccccccCCCCCccEEEeCHHHHH
Confidence            877788888885 7889998887755

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.2e-17  Score=181.46  Aligned_cols=130  Identities=19%  Similarity=0.252  Sum_probs=100.3

Q ss_pred             ccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccC
Q 036717          208 SKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRI  287 (580)
Q Consensus       208 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  287 (580)
                      ..|.+. ..+..|..++.|+.|+|++|.+...+...+.+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+
T Consensus       209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          209 IENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             ccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence            334443 4566777888888888888888866666668888899999999888 77888888999999999999998 77


Q ss_pred             chhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhh
Q 036717          288 PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITN  341 (580)
Q Consensus       288 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  341 (580)
                      |..+..+++|++|+|++|.++ .+|..|..+++|+.|++++|.+++.+|..+..
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            888999999999999999987 67777999999999999999998888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.67  E-value=1.9e-15  Score=152.94  Aligned_cols=225  Identities=9%  Similarity=0.113  Sum_probs=111.2

Q ss_pred             cCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccc
Q 036717           69 ELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY  148 (580)
Q Consensus        69 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  148 (580)
                      +|....|.+|.+|+.+.+.. .++.+...+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+ +......+|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence            45555556666677766653 355455556666677777766543 44 555556666666666555433 333333445


Q ss_pred             cCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717          149 MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI  228 (580)
Q Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  228 (580)
                      .++..++.......  ......+|.++.+|+.+.+..+. ......+|.++.+|+.+.+..+ ++.....+|..+..|+.
T Consensus       137 ~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          137 KGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             ecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            55443332222221  11233456666666666665442 2233445666666666666544 33344455666666666


Q ss_pred             EEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccc
Q 036717          229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRA  304 (580)
Q Consensus       229 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  304 (580)
                      +.+..+... .....+...+|+.+.+... ++......+..+..++.+.+..+... .....|..+..++.+....
T Consensus       213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          213 MEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred             eecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence            555543321 2222234445555555432 22233344455555555555444322 2333444444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.8e-17  Score=180.17  Aligned_cols=191  Identities=22%  Similarity=0.196  Sum_probs=116.0

Q ss_pred             ccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeeccccccccc
Q 036717          231 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGP  310 (580)
Q Consensus       231 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  310 (580)
                      +..|.+...+.....++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .
T Consensus       208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~  284 (727)
T 4b8c_D          208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S  284 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred             ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence            334444422223337888999999999988 66766778889999999999988 78888888999999999999988 6


Q ss_pred             CcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccc
Q 036717          311 IPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ  390 (580)
Q Consensus       311 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (580)
                      +|..+..+++|+.|++++|.++ .+|..+..                                                 
T Consensus       285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~-------------------------------------------------  314 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGN-------------------------------------------------  314 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSSCCC-CCCSSTTS-------------------------------------------------
T ss_pred             cChhhcCCCCCCEEECCCCCCC-ccChhhhc-------------------------------------------------
Confidence            7888888999999999999886 66655433                                                 


Q ss_pred             cEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccC-CCeEecccCcceecccccccCcccCCEEECCCC-
Q 036717          391 VEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQN-IHGLNLSYNFLSGSIPESFSNLKMIESLDLSHN-  468 (580)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-  468 (580)
                                        +++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..      |+.|++++| 
T Consensus       315 ------------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~  370 (727)
T 4b8c_D          315 ------------------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDG  370 (727)
T ss_dssp             ------------------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------
T ss_pred             ------------------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccc
Confidence                              678888999999999888888765432 234788999998887764      556677776 


Q ss_pred             -------cccccCchhhcCCCCCCEEeccCCcccccC
Q 036717          469 -------KLNGQIPPQLTELHSLSKFDVSYNNLSGPI  498 (580)
Q Consensus       469 -------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  498 (580)
                             .+.+..+..+..+..+....+++|-+.+..
T Consensus       371 ~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~  407 (727)
T 4b8c_D          371 EPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY  407 (727)
T ss_dssp             -------------------------------CCCGGG
T ss_pred             ccccccCCccccccchhhcccccceeeeecccccccc
Confidence                   455555555666777788888888876433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=3.1e-16  Score=138.48  Aligned_cols=88  Identities=26%  Similarity=0.267  Sum_probs=65.3

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecc-cccccCcccCCEEECCCCcccccCc---hhhcCCCCC
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSL  484 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L  484 (580)
                      +++|+.|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            556677777777777666666777788888888888887532 2677788888888888888886555   477888888


Q ss_pred             CEEeccCCcccc
Q 036717          485 SKFDVSYNNLSG  496 (580)
Q Consensus       485 ~~L~Ls~N~l~~  496 (580)
                      ++|++++|.+..
T Consensus       150 ~~L~l~~n~~~~  161 (168)
T 2ell_A          150 TYLDGYDREDQE  161 (168)
T ss_dssp             CEETTEETTSCB
T ss_pred             cEecCCCCChhh
Confidence            888888887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=3.3e-16  Score=138.33  Aligned_cols=138  Identities=25%  Similarity=0.279  Sum_probs=119.1

Q ss_pred             CCCccEEeCCCCcCc-ccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccC
Q 036717          270 GSALETLDLRDNNFS-GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVG  348 (580)
Q Consensus       270 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~  348 (580)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..       
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence            478999999999998 67888889999999999999999866  77899999999999999998766665443       


Q ss_pred             CCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeC-C
Q 036717          349 NESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNI-P  427 (580)
Q Consensus       349 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~  427 (580)
                                                                                  +++|+.|++++|.+++.. +
T Consensus        94 ------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~  113 (168)
T 2ell_A           94 ------------------------------------------------------------LPNLTHLNLSGNKLKDISTL  113 (168)
T ss_dssp             ------------------------------------------------------------CTTCCEEECBSSSCCSSGGG
T ss_pred             ------------------------------------------------------------CCCCCEEeccCCccCcchhH
Confidence                                                                        678999999999999643 2


Q ss_pred             cccccccCCCeEecccCcceeccc---ccccCcccCCEEECCCCcccccCchh
Q 036717          428 SEIGDLQNIHGLNLSYNFLSGSIP---ESFSNLKMIESLDLSHNKLNGQIPPQ  477 (580)
Q Consensus       428 ~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~  477 (580)
                      ..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+. .+|+.
T Consensus       114 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            789999999999999999996655   58999999999999999988 44543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=7.3e-16  Score=137.35  Aligned_cols=93  Identities=24%  Similarity=0.242  Sum_probs=81.0

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD  488 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  488 (580)
                      +++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            56788888888888877777788999999999999999987778889999999999999999977777788899999999


Q ss_pred             ccCCcccccCCCC
Q 036717          489 VSYNNLSGPIPDK  501 (580)
Q Consensus       489 Ls~N~l~~~~p~~  501 (580)
                      +++|+++|.+|..
T Consensus       131 l~~N~~~~~~~~l  143 (177)
T 2o6r_A          131 LHTNPWDCSCPRI  143 (177)
T ss_dssp             CCSSCBCCCHHHH
T ss_pred             ecCCCeeccCccH
Confidence            9999999988744

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=2.9e-16  Score=135.65  Aligned_cols=83  Identities=25%  Similarity=0.282  Sum_probs=66.3

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceec-ccccccCcccCCEEECCCCcccccCc---hhhcCCCCC
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSL  484 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L  484 (580)
                      +++|+.|++++|.+++.+|..++.+++|++|++++|.+++. .+..++.+++|++|++++|++++..+   ..+..+++|
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  142 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL  142 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence            56777788888888766777777788888888888888863 34778888889999999998887666   578888889


Q ss_pred             CEEeccC
Q 036717          485 SKFDVSY  491 (580)
Q Consensus       485 ~~L~Ls~  491 (580)
                      ++||+++
T Consensus       143 ~~L~l~d  149 (149)
T 2je0_A          143 TYLDGYD  149 (149)
T ss_dssp             CEETTBC
T ss_pred             ccccCCC
Confidence            8888864

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=1e-14  Score=147.57  Aligned_cols=318  Identities=9%  Similarity=0.033  Sum_probs=210.7

Q ss_pred             cCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccc
Q 036717           90 SFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIK  169 (580)
Q Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (580)
                      .++.+...+|.++++|+.+.+..+ ++ .++...|.+|++|+.+++.++ ++.....+|.++++|+.+.+..+ +.....
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence            355556678889999999999754 66 788888889999999998754 55555667888888888777654 343455


Q ss_pred             ccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCC
Q 036717          170 DGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSS  248 (580)
Q Consensus       170 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~  248 (580)
                      .+|..+..++.......  ......+|.++++|+.+.+..+.. .....+|.++.+|+.+.+..+ ++......+ .+..
T Consensus       134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~  209 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL  209 (394)
T ss_dssp             TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence            56666554333333222  223345688888888888876543 355667888888888888765 444444444 6677


Q ss_pred             CcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeC
Q 036717          249 VEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSH  328 (580)
Q Consensus       249 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  328 (580)
                      |+.+.+..+...  +......+.+|+.+.+... ++......+..+..++.+.+..+... .....|..+..++.+....
T Consensus       210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred             cceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence            777766554432  2233344566777776543 23234455666777777777665433 4455666677777666655


Q ss_pred             CeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccc
Q 036717          329 NRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVI  408 (580)
Q Consensus       329 n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (580)
                      +.+...   .+                                                                   ..
T Consensus       286 ~~i~~~---~F-------------------------------------------------------------------~~  295 (394)
T 4fs7_A          286 VIVPEK---TF-------------------------------------------------------------------YG  295 (394)
T ss_dssp             SEECTT---TT-------------------------------------------------------------------TT
T ss_pred             eeeccc---cc-------------------------------------------------------------------cc
Confidence            433210   00                                                                   01


Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD  488 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  488 (580)
                      +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.....+|.++++|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            566777777654 66566778889999999999754 77666788999999999999877 7666677899999999998


Q ss_pred             ccCC
Q 036717          489 VSYN  492 (580)
Q Consensus       489 Ls~N  492 (580)
                      +..+
T Consensus       373 lp~~  376 (394)
T 4fs7_A          373 LPKR  376 (394)
T ss_dssp             EEGG
T ss_pred             ECCC
Confidence            8654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=7.1e-16  Score=133.16  Aligned_cols=128  Identities=23%  Similarity=0.265  Sum_probs=92.6

Q ss_pred             CCccEEeCCCCcCc-ccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCC
Q 036717          271 SALETLDLRDNNFS-GRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN  349 (580)
Q Consensus       271 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~  349 (580)
                      ++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..        
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--------   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK--------   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence            46777777777776 56666667777777777777777654  56777777888888888777655554332        


Q ss_pred             CCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceee-CCc
Q 036717          350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGN-IPS  428 (580)
Q Consensus       350 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~  428 (580)
                                                                                 +++|+.|++++|.+++. .+.
T Consensus        87 -----------------------------------------------------------l~~L~~L~ls~N~i~~~~~~~  107 (149)
T 2je0_A           87 -----------------------------------------------------------CPNLTHLNLSGNKIKDLSTIE  107 (149)
T ss_dssp             -----------------------------------------------------------CTTCCEEECTTSCCCSHHHHG
T ss_pred             -----------------------------------------------------------CCCCCEEECCCCcCCChHHHH
Confidence                                                                       56778888888888753 346


Q ss_pred             ccccccCCCeEecccCcceeccc---ccccCcccCCEEECCC
Q 036717          429 EIGDLQNIHGLNLSYNFLSGSIP---ESFSNLKMIESLDLSH  467 (580)
Q Consensus       429 ~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~  467 (580)
                      .++.+++|++|++++|.+++..+   ..+..+++|+.||+++
T Consensus       108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            78888888888888888886655   5778888888888763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=4.7e-15  Score=133.73  Aligned_cols=127  Identities=24%  Similarity=0.305  Sum_probs=79.8

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      +.+++++|.++ .+|..+   .++|++|++++|.++ .+|..|..+++|++|++++|.++ .++...|.++++|++|+|+
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence            45666666666 566544   246677777777776 45566677777777777777666 4444445666666666666


Q ss_pred             cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC
Q 036717          137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS  189 (580)
Q Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  189 (580)
                      +|.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66666555556666666666666666666544445556666666666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=9e-15  Score=130.21  Aligned_cols=132  Identities=19%  Similarity=0.196  Sum_probs=85.1

Q ss_pred             ccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEc
Q 036717           56 LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDL  135 (580)
Q Consensus        56 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  135 (580)
                      .+.+++++++++ .+|..+   .++|++|++++|++++..+..++.+++|++|++++|.++ .++...+..+++|++|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence            356666666666 555443   356777777777777655556677777777777777776 555555566677777777


Q ss_pred             ccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCC
Q 036717          136 SNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI  192 (580)
Q Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  192 (580)
                      ++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            777766555555666677777777777666544444566666666777666666443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=7.8e-15  Score=130.43  Aligned_cols=133  Identities=14%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717            3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV   82 (580)
Q Consensus         3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   82 (580)
                      +.++++|++|++++|.++ .+|. +....++|++|++++|.++++.....+++|++|++++|.++ .+|..++..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence            345666777777777776 4543 33233467777777776666533345566666666666666 44544444566666


Q ss_pred             EEEcccCcCccccch--hhhcCCCCCEEEcccCcCccccchH---HHhCCCCCcEEEcccccC
Q 036717           83 YMNISKNSFEGNIPS--SIAKMQGLRFLDVSTNNFAGELSQS---LVTNCFSLIWLDLSNNNF  140 (580)
Q Consensus        83 ~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l  140 (580)
                      +|++++|.++ .+|.  .++.+++|++|++++|.++ .+|..   .+..+++|++|+++.|..
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6666666665 3343  5566666666666666665 44443   334555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.57  E-value=1e-16  Score=145.70  Aligned_cols=153  Identities=21%  Similarity=0.283  Sum_probs=106.0

Q ss_pred             CCCCccEEeCCCCcCcccCch------hhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhh
Q 036717          269 RGSALETLDLRDNNFSGRIPH------QINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNS  342 (580)
Q Consensus       269 ~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~  342 (580)
                      ....++.++++++.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+.. 
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence            344555566666666555554      77777888888888887775 45 6777788888888888876 45543322 


Q ss_pred             cccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcc
Q 036717          343 LFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNEL  422 (580)
Q Consensus       343 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  422 (580)
                                                                                        +++|+.|++++|++
T Consensus        92 ------------------------------------------------------------------~~~L~~L~L~~N~l  105 (198)
T 1ds9_A           92 ------------------------------------------------------------------ADTLEELWISYNQI  105 (198)
T ss_dssp             ------------------------------------------------------------------HHHCSEEEEEEEEC
T ss_pred             ------------------------------------------------------------------CCcCCEEECcCCcC
Confidence                                                                              46777788888888


Q ss_pred             eeeCCcccccccCCCeEecccCcceeccc-ccccCcccCCEEECCCCcccccCchh----------hcCCCCCCEEeccC
Q 036717          423 TGNIPSEIGDLQNIHGLNLSYNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ----------LTELHSLSKFDVSY  491 (580)
Q Consensus       423 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~  491 (580)
                      ++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+.+|..          +..+++|++||  +
T Consensus       106 ~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~  181 (198)
T 1ds9_A          106 AS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G  181 (198)
T ss_dssp             CC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred             Cc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence            75 34 57778888888888888875333 46777888888888888887665542          67778888776  5


Q ss_pred             Cccc
Q 036717          492 NNLS  495 (580)
Q Consensus       492 N~l~  495 (580)
                      |+++
T Consensus       182 ~~i~  185 (198)
T 1ds9_A          182 MPVD  185 (198)
T ss_dssp             GGGT
T ss_pred             cccC
Confidence            6554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=4.6e-15  Score=130.92  Aligned_cols=110  Identities=22%  Similarity=0.186  Sum_probs=96.0

Q ss_pred             eeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc
Q 036717          396 MTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP  475 (580)
Q Consensus       396 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  475 (580)
                      ++.+.+..++....++++.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|+|++..+
T Consensus        16 ~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~   95 (170)
T 3g39_A           16 CSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR   95 (170)
T ss_dssp             CTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             eCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH
Confidence            33444555555557899999999999999889999999999999999999998888889999999999999999998888


Q ss_pred             hhhcCCCCCCEEeccCCcccccCCCCcccC
Q 036717          476 PQLTELHSLSKFDVSYNNLSGPIPDKEQFS  505 (580)
Q Consensus       476 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~  505 (580)
                      ..|..+++|++|+|++|+++|.++...++.
T Consensus        96 ~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~  125 (170)
T 3g39_A           96 GAFDNLKSLTHIWLLNNPWDCACSDILYLS  125 (170)
T ss_dssp             TTTTTCTTCCEEECCSSCBCTTBGGGHHHH
T ss_pred             HHhcCCCCCCEEEeCCCCCCCCchhHHHHH
Confidence            889999999999999999999987554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.1e-14  Score=129.40  Aligned_cols=86  Identities=16%  Similarity=0.175  Sum_probs=71.1

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccc--cccCcccCCEEECCCCcccccCch----hhcCCC
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE--SFSNLKMIESLDLSHNKLNGQIPP----QLTELH  482 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~  482 (580)
                      +++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+..+++|+.|++++|.++. +|.    .+..++
T Consensus        63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~  140 (176)
T 1a9n_A           63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP  140 (176)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred             CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence            677888888888888666666688999999999999997 4555  78889999999999999984 555    488899


Q ss_pred             CCCEEeccCCcccc
Q 036717          483 SLSKFDVSYNNLSG  496 (580)
Q Consensus       483 ~L~~L~Ls~N~l~~  496 (580)
                      +|++||+++|....
T Consensus       141 ~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          141 QVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCSEETTEECCHHH
T ss_pred             ccceeCCCcCCHHH
Confidence            99999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=1.1e-14  Score=128.90  Aligned_cols=110  Identities=23%  Similarity=0.207  Sum_probs=95.7

Q ss_pred             EeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccC
Q 036717          395 FMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI  474 (580)
Q Consensus       395 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  474 (580)
                      .+..+.+..++....++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..
T Consensus        18 ~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~   97 (174)
T 2r9u_A           18 NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP   97 (174)
T ss_dssp             ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence            34455556666666789999999999999988999999999999999999999877778899999999999999999877


Q ss_pred             chhhcCCCCCCEEeccCCcccccCCCCccc
Q 036717          475 PPQLTELHSLSKFDVSYNNLSGPIPDKEQF  504 (580)
Q Consensus       475 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  504 (580)
                      +..|..+++|++|+|++|++.+.++...++
T Consensus        98 ~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l  127 (174)
T 2r9u_A           98 RGAFDNLKSLTHIYLYNNPWDCECRDIMYL  127 (174)
T ss_dssp             TTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred             HHHhccccCCCEEEeCCCCcccccccHHHH
Confidence            777999999999999999999988654333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.48  E-value=2.2e-12  Score=130.44  Aligned_cols=108  Identities=8%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             hhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcC
Q 036717          218 VQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSN  296 (580)
Q Consensus       218 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  296 (580)
                      .+|..+..|+.+.+..+.. ......+ +++.|+.+.+. +.++.....+|.+|.+|+.+++.++ ++.....+|.+|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            3444555555555543322 1222222 44555555553 2233333444555555555555433 33233344555555


Q ss_pred             cceeecccccccccCcccccCCCCCCEEEeeCC
Q 036717          297 LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHN  329 (580)
Q Consensus       297 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  329 (580)
                      |+.+.+..+ ++.....+|.+|.+|+.+++.++
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            555555432 33333445555555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.48  E-value=2.7e-12  Score=129.75  Aligned_cols=81  Identities=10%  Similarity=0.219  Sum_probs=43.4

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD  488 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  488 (580)
                      +.+|+.+++..+ ++..-..+|.+|.+|+.+.+..+ ++.+-..+|.++++|+.+++.++....   ..+....+|+.+.
T Consensus       310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~  384 (394)
T 4gt6_A          310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP  384 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred             CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence            455566666533 44444566777777777777543 554555677777777777777765432   3455566677666


Q ss_pred             ccCCcc
Q 036717          489 VSYNNL  494 (580)
Q Consensus       489 Ls~N~l  494 (580)
                      +..|.+
T Consensus       385 i~~~~~  390 (394)
T 4gt6_A          385 VAPGSI  390 (394)
T ss_dssp             ------
T ss_pred             eCCCCE
Confidence            655543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=1.9e-15  Score=137.25  Aligned_cols=138  Identities=22%  Similarity=0.283  Sum_probs=119.6

Q ss_pred             hccCcCcceeecccccccccCcc------cccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCC
Q 036717          291 INEHSNLRALLLRANYLQGPIPH------QLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGN  364 (580)
Q Consensus       291 ~~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~  364 (580)
                      +.....++.++++.+.+++..|.      .+..+++|+.|++++|.+++ +| .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence            45567888889999998888776      89999999999999999975 55 3332                       


Q ss_pred             ccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccC
Q 036717          365 VDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYN  444 (580)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  444 (580)
                                                                  +++|+.|++++|.++ .+|..+..+++|++|++++|
T Consensus        69 --------------------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           69 --------------------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             --------------------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEE
T ss_pred             --------------------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCC
Confidence                                                        688999999999999 67888888999999999999


Q ss_pred             cceecccccccCcccCCEEECCCCcccccCc-hhhcCCCCCCEEeccCCcccccCCC
Q 036717          445 FLSGSIPESFSNLKMIESLDLSHNKLNGQIP-PQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       445 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      .+++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus       104 ~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          104 QIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             ECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            9996 45 68899999999999999996443 5789999999999999999998775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.41  E-value=7.6e-13  Score=116.56  Aligned_cols=106  Identities=20%  Similarity=0.281  Sum_probs=71.3

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      ..+.+++++|.++ .+|..+   .++|++|++++|++++..|..|..+++|++|+|++|+++ .++...|..+++|++|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEE
Confidence            3466777777776 566554   367777777777777666777777777777777777776 55555556666677777


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCcccc
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS  165 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (580)
                      |++|++++..+..|..+++|++|++++|.+.
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            7666666555455666666666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=1e-12  Score=116.07  Aligned_cols=104  Identities=17%  Similarity=0.268  Sum_probs=71.5

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      +.+++++|.++ .+|..+   .++|++|++++|++++..|..|+++++|++|+|++|+++ .+|...+..+++|++|+|+
T Consensus        15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence            56777777776 677654   367777888888777776777777777777777777777 5666555666777777777


Q ss_pred             cccCCCcCCccccCCCCCCEEeccCcccc
Q 036717          137 NNNFDGQIFPNYMNLTQLQLLYLDNNHFS  165 (580)
Q Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (580)
                      +|++++..+..|..+++|++|++++|.+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            77666544444666666666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=3.1e-14  Score=142.00  Aligned_cols=136  Identities=17%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             CCCCcEEEcccCcCccccchhhhcC-----CCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccc----
Q 036717           78 LQKLVYMNISKNSFEGNIPSSIAKM-----QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY----  148 (580)
Q Consensus        78 l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----  148 (580)
                      .++|+.|++++|.++......+...     ++|++|+|++|.+++.....+...+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3566677777776664433333332     5666777766666543333333444556666666666653322222    


Q ss_pred             -cCCCCCCEEeccCcccccc----ccccccCCCCCCEEEcccCCCCCCC----chhhhcCCCCCEEEcccCcCC
Q 036717          149 -MNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSGHI----PSWMGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       149 -~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~  213 (580)
                       ...++|++|++++|.+++.    ++..+...++|++|+|++|.+.+..    +..+...++|++|++++|.++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence             1345555555555555432    2222344455555555555544211    223333444444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=1.1e-13  Score=138.01  Aligned_cols=185  Identities=16%  Similarity=0.151  Sum_probs=98.1

Q ss_pred             CCCccEEEccCCCCCccCChhHhh----cCCCCcEEEcccCcCccccchhhh-cCCCCCEEEcccCcCccccchHHH---
Q 036717           53 QHGLLSLDISKNSFTGELPQNMGI----VLQKLVYMNISKNSFEGNIPSSIA-KMQGLRFLDVSTNNFAGELSQSLV---  124 (580)
Q Consensus        53 ~~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~---  124 (580)
                      .+.|+.|++++|.++......+..    ..++|++|+|++|.++......+. .+++|++|+|++|.+++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            345666666666655322222111    124666666666666543222222 245666666666666532222211   


Q ss_pred             -hCCCCCcEEEcccccCCCc----CCccccCCCCCCEEeccCcccccc----ccccccCCCCCCEEEcccCCCCCC----
Q 036717          125 -TNCFSLIWLDLSNNNFDGQ----IFPNYMNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVLDISNNRLSGH----  191 (580)
Q Consensus       125 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----  191 (580)
                       ...++|++|+|++|.++..    ++..+..+++|++|++++|.+++.    ++..+...++|++|++++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2345666777776666532    223335566777777777776642    244455667777888887777642    


Q ss_pred             CchhhhcCCCCCEEEcccCcCCCcCchhccCC---C--CCcEEE--ccCCcCc
Q 036717          192 IPSWMGNFSYLQILSMSKNLLEGNIPVQFNDL---L--DLEILN--ISENNLS  237 (580)
Q Consensus       192 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~--~L~~L~--l~~n~l~  237 (580)
                      ++..+...++|++|++++|.++......+..+   .  .++.+.  +..+.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            23344556778888888887765444444332   1  155555  5555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=2.3e-12  Score=128.00  Aligned_cols=90  Identities=20%  Similarity=0.208  Sum_probs=83.9

Q ss_pred             cccccEEEccC-CcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEE
Q 036717          409 LEHMAGLDLSS-NELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF  487 (580)
Q Consensus       409 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  487 (580)
                      +.+|+.|+|++ |.+++..+..|+++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            57899999996 999988889999999999999999999999999999999999999999999987777787776 9999


Q ss_pred             eccCCcccccCC
Q 036717          488 DVSYNNLSGPIP  499 (580)
Q Consensus       488 ~Ls~N~l~~~~p  499 (580)
                      +|++|++.|.|.
T Consensus       109 ~l~~N~~~c~c~  120 (347)
T 2ifg_A          109 VLSGNPLHCSCA  120 (347)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EeeCCCccCCCc
Confidence            999999999876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.31  E-value=1.9e-10  Score=115.63  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             hhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCC
Q 036717          194 SWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSA  272 (580)
Q Consensus       194 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~  272 (580)
                      ..+..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++......+ .+.+|+.+.+..+ +......+|..|.+
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence            33444455555555433 22233344555555555555443 333333333 4455555555432 33233444555555


Q ss_pred             ccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717          273 LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS  327 (580)
Q Consensus       273 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  327 (580)
                      |+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            555555555554444445555555555555433 333334455555555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.24  E-value=1.3e-09  Score=109.39  Aligned_cols=61  Identities=13%  Similarity=0.118  Sum_probs=27.4

Q ss_pred             cccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEec
Q 036717          428 SEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDV  489 (580)
Q Consensus       428 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  489 (580)
                      .+|.++++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+-..+|.++++|+.+.+
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            34444444444444444444344444444444444444432 33333344444444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=2.3e-11  Score=120.78  Aligned_cols=107  Identities=19%  Similarity=0.231  Sum_probs=90.7

Q ss_pred             cEEEccCC-cceeeCCcccccccCCCeEeccc-CcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEecc
Q 036717          413 AGLDLSSN-ELTGNIPSEIGDLQNIHGLNLSY-NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS  490 (580)
Q Consensus       413 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  490 (580)
                      ..++++++ +++ .+|. +..+++|+.|+|++ |.+++..+..|+++++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35789998 898 5788 99999999999996 99999888999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCcccCCcCccccCCCCCCCCC
Q 036717          491 YNNLSGPIPDKEQFSTFDESSYRGNLHLCGP  521 (580)
Q Consensus       491 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  521 (580)
                      +|+|++..+.......+....+.+|+..|.+
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            9999976554333233666667777776643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=8.2e-10  Score=108.98  Aligned_cols=65  Identities=15%  Similarity=0.277  Sum_probs=34.3

Q ss_pred             CCCCcEEEeeCCcCcccCChhcc---CCCCccEEeCCCCcCcccC----chhhccCcCcceeeccccccccc
Q 036717          246 LSSVEHLYLQNNALGGSIPNTFF---RGSALETLDLRDNNFSGRI----PHQINEHSNLRALLLRANYLQGP  310 (580)
Q Consensus       246 ~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~  310 (580)
                      +++|++|++.+|.+.+..+..+.   .+++|++|+++.|.+++..    +..+..+++|+.|+++.|.++..
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            55666666666665533222222   3456666666666665432    22223445666666666655543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=1.7e-09  Score=106.71  Aligned_cols=64  Identities=13%  Similarity=0.220  Sum_probs=29.0

Q ss_pred             cccccEEEccCCcceeeCCcccc---cccCCCeEecccCcceec----ccccccCcccCCEEECCCCcccc
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIG---DLQNIHGLNLSYNFLSGS----IPESFSNLKMIESLDLSHNKLNG  472 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~  472 (580)
                      +++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            44555555555555432222221   344555555555555432    22223344555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=1.5e-07  Score=87.83  Aligned_cols=67  Identities=22%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             ccccCCCeEecccCccee--cccccccCcccCCEEECCCCcccccCchhhcCCC--CCCEEeccCCcccccCC
Q 036717          431 GDLQNIHGLNLSYNFLSG--SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH--SLSKFDVSYNNLSGPIP  499 (580)
Q Consensus       431 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p  499 (580)
                      .++++|+.|+|++|.|++  .+|..+..+++|+.|+|++|+|++.  +.+..+.  +|++|+|++|++++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            345555555555555554  2334444555555555555555543  2222222  55555555555555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=8.6e-08  Score=85.19  Aligned_cols=17  Identities=12%  Similarity=0.000  Sum_probs=9.3

Q ss_pred             ccCCCCCCEEEeeCCee
Q 036717          315 LCRLRKLGIMDLSHNRL  331 (580)
Q Consensus       315 ~~~l~~L~~L~l~~n~l  331 (580)
                      +...+.|+.|++++|.+
T Consensus       147 L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          147 LEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHCSSCCEEECCCSSH
T ss_pred             HHhCCCcCEEeccCCCC
Confidence            33445566666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=7.8e-08  Score=85.46  Aligned_cols=116  Identities=10%  Similarity=0.122  Sum_probs=89.3

Q ss_pred             chhhhcCCCCCEEEcccC-cCCCc----CchhccCCCCCcEEEccCCcCccccCCcc-----CCCCCcEEEeeCCcCccc
Q 036717          193 PSWMGNFSYLQILSMSKN-LLEGN----IPVQFNDLLDLEILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGS  262 (580)
Q Consensus       193 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~  262 (580)
                      ...+...+.|++|++++| .+...    +...+...+.|++|+|++|.+.......+     ..++|++|+|++|.+.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345667889999999999 87642    34556778899999999999876443322     557899999999999854


Q ss_pred             ----CChhccCCCCccEEeC--CCCcCccc----CchhhccCcCcceeeccccccc
Q 036717          263 ----IPNTFFRGSALETLDL--RDNNFSGR----IPHQINEHSNLRALLLRANYLQ  308 (580)
Q Consensus       263 ----~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~  308 (580)
                          +...+...++|++|++  ++|.++..    +...+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                3556677789999999  88998754    3345566789999999999876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=9.2e-08  Score=89.32  Aligned_cols=78  Identities=27%  Similarity=0.337  Sum_probs=65.5

Q ss_pred             cccccEEEccCCccee--eCCcccccccCCCeEecccCcceecccccccCcc--cCCEEECCCCcccccCc-------hh
Q 036717          409 LEHMAGLDLSSNELTG--NIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLK--MIESLDLSHNKLNGQIP-------PQ  477 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p-------~~  477 (580)
                      +++|+.|+|++|++++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|++|+|++|.+.+.+|       ..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            7899999999999997  5567788999999999999999965  3344444  99999999999997665       34


Q ss_pred             hcCCCCCCEEe
Q 036717          478 LTELHSLSKFD  488 (580)
Q Consensus       478 l~~l~~L~~L~  488 (580)
                      +..+|+|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            77889999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.20  E-value=4.3e-07  Score=78.53  Aligned_cols=84  Identities=13%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             ccccEEEccCCcceeeCCcccccccCCCeEecccCc-ceecccccccCc----ccCCEEECCCCc-ccccCchhhcCCCC
Q 036717          410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNF-LSGSIPESFSNL----KMIESLDLSHNK-LNGQIPPQLTELHS  483 (580)
Q Consensus       410 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~  483 (580)
                      ..|+.||+++|.+++.--..+..+++|+.|+|++|. ++..--..+..+    ++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            468999999999998777778999999999999995 776555556664    479999999985 88766667889999


Q ss_pred             CCEEeccCCc
Q 036717          484 LSKFDVSYNN  493 (580)
Q Consensus       484 L~~L~Ls~N~  493 (580)
                      |++|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.09  E-value=1.5e-06  Score=75.16  Aligned_cols=82  Identities=9%  Similarity=0.118  Sum_probs=38.8

Q ss_pred             CCcEEEcccCcCccccchhhhcCCCCCEEEcccCc-CccccchHHHhCC----CCCcEEEccccc-CCCcCCccccCCCC
Q 036717           80 KLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN-FAGELSQSLVTNC----FSLIWLDLSNNN-FDGQIFPNYMNLTQ  153 (580)
Q Consensus        80 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~  153 (580)
                      +|+.||++++.++...-..+..+++|++|+|++|. +++..-..+ ..+    ++|++|++++|. +++.....+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            45566666655554444455556666666666653 432222221 221    245555555543 44333333444445


Q ss_pred             CCEEeccCc
Q 036717          154 LQLLYLDNN  162 (580)
Q Consensus       154 L~~L~l~~n  162 (580)
                      |++|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.70  E-value=4.7e-05  Score=62.68  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=48.4

Q ss_pred             CeEecccCcce-ecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCCcccccCC
Q 036717          437 HGLNLSYNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP  499 (580)
Q Consensus       437 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  499 (580)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|++|+|++|++.|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            36777777776 24554433  468999999999998778889999999999999999998875

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.36  E-value=0.00011  Score=64.80  Aligned_cols=86  Identities=9%  Similarity=0.120  Sum_probs=42.8

Q ss_pred             CCccEEEccCCCCCccCChh---HhhcCCCCcEEEcccCcCcccc----chhhhcCCCCCEEEcccC---cCccccc---
Q 036717           54 HGLLSLDISKNSFTGELPQN---MGIVLQKLVYMNISKNSFEGNI----PSSIAKMQGLRFLDVSTN---NFAGELS---  120 (580)
Q Consensus        54 ~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n---~l~~~~~---  120 (580)
                      ..|+.|+|++|.+.+.....   +...-+.|++|+|++|.|....    .+++..-+.|++|+|+++   .+.....   
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            45666666666655322111   1123456677777777665332    233444556777777654   2222111   


Q ss_pred             hHHHhCCCCCcEEEccccc
Q 036717          121 QSLVTNCFSLIWLDLSNNN  139 (580)
Q Consensus       121 ~~~~~~l~~L~~L~L~~n~  139 (580)
                      ...+..-+.|+.|+++.|.
T Consensus       150 a~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCCcCeEeccCCC
Confidence            1122344567777776554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=0.00024  Score=62.46  Aligned_cols=17  Identities=12%  Similarity=0.077  Sum_probs=8.6

Q ss_pred             ccCCCCCCEEEeeCCee
Q 036717          315 LCRLRKLGIMDLSHNRL  331 (580)
Q Consensus       315 ~~~l~~L~~L~l~~n~l  331 (580)
                      +..-+.|+.|+++.|.+
T Consensus       153 L~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          153 IEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHCSSCCEEECCCCCH
T ss_pred             HHhCCCcCeEeccCCCc
Confidence            34445555555554443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.97  E-value=0.0009  Score=54.91  Aligned_cols=57  Identities=21%  Similarity=0.261  Sum_probs=47.4

Q ss_pred             cEEEccCCcce-eeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccc
Q 036717          413 AGLDLSSNELT-GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN  471 (580)
Q Consensus       413 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  471 (580)
                      ..++.++++++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46889999987 35665443  47999999999999877888999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	580
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 9e-19
 Identities = 60/287 (20%), Positives = 97/287 (33%), Gaps = 24/287 (8%)

Query: 245 NLSSVEHLYLQNNALGG--SIPNTFFRGSALETLDLRDN-NFSGRIPHQINEHSNLRALL 301
               V +L L    L     IP++      L  L +    N  G IP  I + + L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGAD 361
           +    + G IP  L +++ L  +D S+N L G++P  I++                    
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG-------------- 153

Query: 362 VGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNE 421
                   +  + +   + +S   +      +                         S  
Sbjct: 154 ------ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207

Query: 422 LTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 481
           +     S +                           K +  LDL +N++ G +P  LT+L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 482 HSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT 528
             L   +VS+NNL G IP       FD S+Y  N  LCG P+  +CT
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.9 bits (172), Expect = 5e-14
 Identities = 65/308 (21%), Positives = 110/308 (35%), Gaps = 45/308 (14%)

Query: 170 DGLLRSTELMVLDISNNRLSG--HIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLE 227
           D   ++  +  LD+S   L     IPS + N  YL  L +                    
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI----------------- 86

Query: 228 ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRI 287
                 N +     +   L+ + +LY+ +  + G+IP+   +   L TLD   N  SG +
Sbjct: 87  -----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 288 PHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347
           P  I+   NL  +    N + G IP       KL                   N L  K+
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-----------NRLTGKI 190

Query: 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407
                           N+   D   + ++             Q          ++  K  
Sbjct: 191 PPTFANL---------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
           + +++ GLDL +N + G +P  +  L+ +H LN+S+N L G IP+   NL+  +    ++
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 468 NKLNGQIP 475
           NK     P
Sbjct: 301 NKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.1 bits (162), Expect = 1e-12
 Identities = 51/262 (19%), Positives = 96/262 (36%), Gaps = 2/262 (0%)

Query: 56  LLSLDISKNSFTGELPQNMGIV-LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
           + +LD+S  +     P    +  L  L ++ I   +                     T+ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 115 FAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR 174
                    ++   +L+ LD S N   G + P+  +L  L  +  D N  SG I D    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
            ++L      +                L  + +S+N+LEG+  V F    + + +++++N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH 294
           +L+  +       ++  L L+NN + G++P    +   L +L++  NN  G IP Q    
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 295 SNLRALLLRANYLQGPIPHQLC 316
                     N      P   C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 56/260 (21%), Positives = 88/260 (33%), Gaps = 5/260 (1%)

Query: 8   NLKYLDLSHNKLAGNFPTWL-LENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSF 66
            +  LDLS   L   +P    L N   L  LY+   +     +  A   L  L     + 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 67  TGELPQNMG--IVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
           T            ++ LV ++ S N+  G +P SI+ +  L  +    N  +G +  S  
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
           +       + +S N   G+I P + NL         + +        L  S +       
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAF--VDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL 244
                      +G    L  L +  N + G +P     L  L  LN+S NNL G +    
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 245 NLSSVEHLYLQNNALGGSIP 264
           NL   +     NN      P
Sbjct: 289 NLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 60/241 (24%), Positives = 94/241 (39%), Gaps = 27/241 (11%)

Query: 125 TNCFSLIWLDLSNNNFDG--QIFPNYMNLTQLQLLYLDNNH-FSGKIKDGLLRSTELMVL 181
           T  + +  LDLS  N      I  +  NL  L  LY+   +   G I   + + T+L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 182 DISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMI 241
            I++  +SG IP ++     L  L  S N L G +P   + L +L  +    N +SG++ 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 242 STLNL--SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRD------------------- 280
            +          + +  N L G IP TF   +       R+                   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 281 ---NNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPA 337
               N       ++    NL  L LR N + G +P  L +L+ L  +++S N L G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 338 C 338
            
Sbjct: 287 G 287

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 3e-16
 Identities = 64/429 (14%), Positives = 122/429 (28%), Gaps = 80/429 (18%)

Query: 78  LQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN 137
           L + +   + K +    +  S   +  +  L           S   V    +L  ++ SN
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 75

Query: 138 NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 197
           N           NLT+L  + ++NN  +       L +   + L  +       + +   
Sbjct: 76  NQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 198 NFSYLQILSMSKNLLEGNIPVQFN--------------DLLDLEILNISENNLSGSMIST 243
                   +   ++   +                      L         +N    +   
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
             L+++E L   NN +    P      + L+ L L  N         +   +NL  L L 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVG 363
            N +    P  L  L KL  + L  N++    P                           
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISP--------------------------- 280

Query: 364 NVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELT 423
                               L  L     +        +      L+++  L L  N ++
Sbjct: 281 --------------------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320

Query: 424 GNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 483
              P  +  L  +  L  + N +S     S +NL  I  L   HN+++   P  L  L  
Sbjct: 321 DISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR 374

Query: 484 LSKFDVSYN 492
           +++  ++  
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 75.4 bits (184), Expect = 3e-15
 Identities = 65/335 (19%), Positives = 112/335 (33%), Gaps = 31/335 (9%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL-------------INNSFSGFQLTGAQH 54
           NL  ++ S+N+L    P   L+N TKL  + +             + N            
Sbjct: 67  NLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 55  GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
            +  L    N    EL  N    +  L  +   +    GN  + +  +  L  L+    +
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 115 FAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR 174
                  S++    +L  L  +NN            LT L  L L+ N         L  
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLAS 239

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
            T L  LD++NN++S   P  +   + L  L +  N +    P+     L          
Sbjct: 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG---LTALTNLELNE 294

Query: 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH 294
           N    +    NL ++ +L L  N +    P      + L+ L   +N  S      +   
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANL 350

Query: 295 SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHN 329
           +N+  L    N +    P  L  L ++  + L+  
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 8e-14
 Identities = 51/233 (21%), Positives = 85/233 (36%), Gaps = 17/233 (7%)

Query: 26  WLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN 85
             L N T LE L + +N  S   +      L SL  + N  +   P  +   L +L   +
Sbjct: 169 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL---S 225

Query: 86  ISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIF 145
           ++ N  +     ++A +  L  LD++ N  +     S       L  L L  N       
Sbjct: 226 LNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISN--I 278

Query: 146 PNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQIL 205
                LT L  L L+ N          L+   L  L +  N +S   P  + + + LQ L
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISDISP--VSSLTKLQRL 334

Query: 206 SMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNA 258
             + N +         +L ++  L+   N +S       NL+ +  L L + A
Sbjct: 335 FFANNKVSD--VSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 5e-10
 Identities = 40/182 (21%), Positives = 63/182 (34%), Gaps = 15/182 (8%)

Query: 5   HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKN 64
              NL  L L+ N+L        L + T L  L L NN  S          L  L +  N
Sbjct: 217 ILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 273

Query: 65  SFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLV 124
             +   P             N+  N  +    S I+ ++ L +L +  NN +       V
Sbjct: 274 QISNISPLA-----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---V 325

Query: 125 TNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
           ++   L  L  +NN        +  NLT +  L   +N  S       L  T +  L ++
Sbjct: 326 SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANL--TRITQLGLN 381

Query: 185 NN 186
           + 
Sbjct: 382 DQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 8e-10
 Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 13/160 (8%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
           L    NL  LDL++N+++   P   L   TKL  L L  N  S         GL +L   
Sbjct: 237 LASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNIS---PLAGLTALTNL 290

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQS 122
           + +       +    L+ L Y+ +  N+     P  ++ +  L+ L  + N  +   S  
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSS-- 346

Query: 123 LVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNN 162
            + N  ++ WL   +N           NLT++  L L++ 
Sbjct: 347 -LANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 46/262 (17%), Positives = 90/262 (34%), Gaps = 8/262 (3%)

Query: 95  IPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQL 154
           +P  +        LD+  N     +      N  +L  L L NN         +  L +L
Sbjct: 25  VPKDLPP--DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 155 QLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG 214
           + LYL  N      +       EL V +    ++   + + +     +++ +       G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-G 140

Query: 215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALE 274
                F  +  L  + I++ N+  + I      S+  L+L  N +      +    + L 
Sbjct: 141 IENGAFQGMKKLSYIRIADTNI--TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 275 TLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334
            L L  N+ S      +    +LR L L  N L   +P  L   + + ++ L +N +  +
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI-SA 256

Query: 335 IPACITNSLFWKVGNESLYQLD 356
           I +       +     S   + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVS 278

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 53/283 (18%), Positives = 97/283 (34%), Gaps = 35/283 (12%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +   LDL +NK+         +N   L  L LINN  S               IS  +F 
Sbjct: 32  DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISK--------------ISPGAFA 76

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                     L KL  + +SKN  +         +Q LR  +         +   L  N 
Sbjct: 77  P---------LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQ 125

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             ++ L  +     G     +  + +L  + + + + +  I  GL  S  L  L +  N+
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNK 182

Query: 188 LSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS 247
           ++    + +   + L  L +S N +         +   L  L+++ N L        +  
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 242

Query: 248 SVEHLYLQNNALGGSIPNTFF------RGSALETLDLRDNNFS 284
            ++ +YL NN +     N F       + ++   + L  N   
Sbjct: 243 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 35/301 (11%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
             +  +LD+ NN+++        N   L  L +  N +    P  F  L+ LE L +S+N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 235 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRD--NNFSGRIPHQIN 292
            L    +      +++ L +  N +     + F   + +  ++L       SG       
Sbjct: 90  QLKE--LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 293 EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352
               L  + +    +          L +L    L  N++     A +           +L
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKG-------LNNL 197

Query: 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM 412
            +L      +  VD     N+     L  ++ + +     +      +            
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV----------- 246

Query: 413 AGLDLSSNELTG------NIPSEIGDLQNIHGLNLSYNFLSGS--IPESFSNLKMIESLD 464
             + L +N ++         P       +  G++L  N +      P +F  + +  ++ 
Sbjct: 247 --VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

Query: 465 L 465
           L
Sbjct: 305 L 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 38/243 (15%), Positives = 76/243 (31%), Gaps = 23/243 (9%)

Query: 273 LETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY 332
              LDL++N  +           NL  L+L  N +    P     L KL  + LS N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 333 GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVE 392
                        +V    + ++           + +  N  + + L  + L+    +  
Sbjct: 93  ELPEKMPKTLQELRVHENEITKV--------RKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 393 VNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPE 452
                           ++ ++ + ++   +T  IP  +    ++  L+L  N ++     
Sbjct: 145 AFQG------------MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAA 189

Query: 453 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSY 512
           S   L  +  L LS N ++      L     L +  ++ N L                  
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249

Query: 513 RGN 515
             N
Sbjct: 250 HNN 252

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 7e-07
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 474
           LDL +N++T     +  +L+N+H L L  N +S   P +F+ L  +E L LS N+L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 475 PPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLPKL 533
                 L  L   +     +   + +    +         N        N +   + KL
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 473
            +  S   L   +P ++    +   L+L  N ++      F NLK + +L L +NK++  
Sbjct: 14  VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 474 IPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLC 519
            P     L  L +  +S N L        +              + 
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 44/256 (17%), Positives = 80/256 (31%), Gaps = 7/256 (2%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLY--LINNSFSGFQLTGAQHGLLSLDISKNS 65
             + + L  N+++   P         L +L+      +            L  LD+S N+
Sbjct: 33  ASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
               +       L +L  +++ +   +   P     +  L++L +  N     L      
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN 185
           +  +L  L L  N         +  L  L  L L  N  +            LM L +  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN 245
           N LS      +     LQ L ++ N    +   +      L+    S + +  S      
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCS--LPQR 267

Query: 246 LSSVEHLYLQNNALGG 261
           L+  +   L  N L G
Sbjct: 268 LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 42/257 (16%), Positives = 77/257 (29%), Gaps = 8/257 (3%)

Query: 32  TKLEVLYLINNSFSGFQLTGAQHGLLSLDISK---NSFTGELPQNMGIVLQKLVYMNISK 88
              + ++L  N  S      +     +L I     N            +           
Sbjct: 32  AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 89  NSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNY 148
                  P++   +  L  L +       EL   L     +L +L L +N         +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 149 MNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMS 208
            +L  L  L+L  N  S   +        L  L +  NR++   P    +   L  L + 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 209 KNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFF 268
            N L          L  L+ L +++N       +    + ++     ++ +  S+P    
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR-L 268

Query: 269 RGSALETLDLRDNNFSG 285
            G  L    L  N+  G
Sbjct: 269 AGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 3e-10
 Identities = 51/276 (18%), Positives = 81/276 (29%), Gaps = 25/276 (9%)

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
                 + +  NR+S    +       L IL +  N+L       F  L  LE L++S+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 235 NLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN 292
               S+       L  +  L+L    L    P  F   +AL+ L L+DN           
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 293 EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESL 352
           +  NL  L L  N +          L  L  + L  NR+    P    +           
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 353 YQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM 412
                    +  +             L  +D  W+                        +
Sbjct: 211 NN-------LSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-------------WAWL 250

Query: 413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG 448
                SS+E+  ++P     L       L+ N L G
Sbjct: 251 QKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 2/210 (0%)

Query: 129 SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRL 188
           +   + L  N        ++     L +L+L +N  +            L  LD+S+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 189 SGHI-PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-NL 246
              + P+       L  L + +  L+   P  F  L  L+ L + +N L      T  +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 247 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANY 306
            ++ HL+L  N +       F    +L+ L L  N  +   PH   +   L  L L AN 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 307 LQGPIPHQLCRLRKLGIMDLSHNRLYGSIP 336
           L       L  LR L  + L+ N       
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 4e-08
 Identities = 51/319 (15%), Positives = 87/319 (27%), Gaps = 52/319 (16%)

Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS 239
                   L   +P  +   +  Q + +  N +       F    +L IL +  N L+  
Sbjct: 15  TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 240 --MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNL 297
                T      +     N  L    P TF     L TL L         P      + L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 298 RALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDE 357
           + L L+ N LQ         L  L  + L  NR+                          
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-------------- 177

Query: 358 EGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDL 417
                                LD   L         N +      +++   L  +  L L
Sbjct: 178 --------------------SLDRLLLHQ-------NRVAHVHPHAFR--DLGRLMTLYL 208

Query: 418 SSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 477
            +N L+      +  L+ +  L L+ N        +      ++    S +++   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 478 LTELHSLSKFDVSYNNLSG 496
              L       ++ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 45/260 (17%), Positives = 70/260 (26%), Gaps = 22/260 (8%)

Query: 275 TLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334
           T           +P  I   +  + + L  N +           R L I+ L  N L   
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 335 IPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVN 394
             A  T     +                  +D+ D              L  L   + ++
Sbjct: 72  DAAAFTGLALLE-----------------QLDLSDNAQLRSVDPATFHGLGRL-HTLHLD 113

Query: 395 FMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESF 454
                         L  +  L L  N L         DL N+  L L  N +S     +F
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 455 SNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDES-SYR 513
             L  ++ L L  N++    P    +L  L    +  NNLS    +        +     
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

Query: 514 GNLHLCGPPINKSCTNLPKL 533
            N  +C          L K 
Sbjct: 234 DNPWVCDCRARPLWAWLQKF 253

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 8/205 (3%)

Query: 55  GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNN 114
             L ++  K + T  LP ++      L   ++S+N       +++     L  L++    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 115 FAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLR 174
                ++  V     ++     ++N    +      L  L +L +  N  +      L  
Sbjct: 67  L----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 175 STELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISEN 234
             EL  L +  N L    P  +     L+ LS++ N L        N L +L+ L + EN
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 235 NLSGSMISTLNLSSVEHLYLQNNAL 259
           +L            +   +L  N  
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 34/203 (16%), Positives = 61/203 (30%), Gaps = 6/203 (2%)

Query: 271 SALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNR 330
           ++   ++    N +  +P  +    +   L L  N L       L    +L  ++L    
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 331 LYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQ 390
           L           L     + +  Q                 +      L    LR L + 
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 391 VEVNFMTKNRYESYKGVILEHMAG--LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSG 448
            E+            G++        L L++N LT      +  L+N+  L L  N L  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185

Query: 449 SIPESFSNLKMIESLDLSHNKLN 471
           +IP+ F    ++    L  N   
Sbjct: 186 TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 37/181 (20%), Positives = 50/181 (27%), Gaps = 5/181 (2%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
           +   L LS N L   F    L   T+L  L L     +  Q       L  L     S  
Sbjct: 32  DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQ---VDGTLPVLGTLDLSHN 87

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                 +       + +     +   ++P    +  G         N    L   L+T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 128 FSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNR 187
             L  L L+NNN           L  L  L L  N     I  G   S  L    +  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 188 L 188
            
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 5/162 (3%)

Query: 3   LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDIS 62
           L     L  L+L   +L        L     L  L L +N      L G     L++   
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTL---PVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 63  KNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQS 122
             +    LP      L +L  + +  N  +   P  +     L  L ++ NN     +  
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 123 LVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHF 164
           L     +L  L L  N+    I   +     L   +L  N +
Sbjct: 168 L-NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (144), Expect = 3e-10
 Identities = 56/446 (12%), Positives = 115/446 (25%), Gaps = 20/446 (4%)

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEG----NIPSSIAKMQGLRFLDVS 111
           + SLDI     +      +  +LQ+   + +           +I S++     L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 112 TNNFAGE----LSQSLVTNCFSLIWLDLSNNNFDGQIF-PNYMNLTQLQLLYLDNNHFSG 166
           +N         + Q L T    +  L L N    G         L  L  L   +   + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 167 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDL 226
               GL    E ++               +   S   + S+ +   +       N+ ++ 
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 227 EILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGR 286
             + +    L  S      L         +N                  L        G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 287 IPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWK 346
                        L     +  G        L ++     S   L  +            
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 347 VGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKG 406
                      E   V +        S     L ++     ++            E  +G
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 407 VILEHMA--GLDLSSNELTGN----IPSEIGDLQNIHGLNLSYNFLSGSIPESFS----- 455
           +         L L+  +++ +    + + +    ++  L+LS N L  +           
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 456 NLKMIESLDLSHNKLNGQIPPQLTEL 481
              ++E L L     + ++  +L  L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 415 LDLSSNELTGNIPSEIGD-LQNIHGLNLSYNFLSG----SIPESFSNLKMIESLDLSHNK 469
           LD+   EL+    +E+   LQ    + L    L+      I  +      +  L+L  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 470 LNGQIPPQLTELHSLSKFDVSYNNLSG 496
           L       + +        +   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 224 LDLEILNISENNLSGSMISTL--NLSSVEHLYLQNNALGG----SIPNTFFRGSALETLD 277
           LD++ L+I    LS +  + L   L   + + L +  L       I +      AL  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 278 LRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC 316
           LR N       H + +     +  ++   LQ        
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 435 NIHGLNLSYNFLSGS-IPESFSNLKMIESLDLSHNKLNGQ----IPPQLTELHSLSKFDV 489
           +I  L++    LS +   E    L+  + + L    L       I   L    +L++ ++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 490 SYNNLSG 496
             N L  
Sbjct: 63  RSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 6e-04
 Identities = 45/408 (11%), Positives = 98/408 (24%), Gaps = 16/408 (3%)

Query: 105 LRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQ----IFPNYMNLTQLQLLYLD 160
           ++ LD+     +      L+        + L +          I         L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 161 NNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQF 220
           +N         +L+  +     I    L     +  G       L     L E ++    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 221 NDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRD 280
                L++L     +    +                           F+   +   D+ +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 281 NNFSGRIPHQINEHSNLRALLLRANYLQGP----IPHQLCRLRKLGIMDLSHNRLYGSIP 336
                      +    L AL L +  +       +   +     L  + L  N+L     
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 337 ACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFM 396
           A +   L           + E G                +   + S     +       +
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 397 TKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES--- 453
            +   E    +    +     ++   +        +   +     +       + E    
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 454 -FSNLKMIESLDLSHNKLNGQ----IPPQLTELHSLSKFDVSYNNLSG 496
                 ++  L L+   ++      +   L   HSL + D+S N L  
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 2   FLRHQFNLKYLDLSHNKLAGNFPTWL---LENNTKLEVLYLINNSFSGF-------QLTG 51
             +    L+ L L+   ++ +  + L   L  N  L  L L NN             +  
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 52  AQHGLLSLDISKNSFTGELPQNMGIVLQK 80
               L  L +    ++ E+   +  + + 
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKD 452

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 79  QKLVYMNISKNSFEGN----IPSSIAKMQGLRFLDVSTNNFAGE----LSQSLVTNCFSL 130
             L  + ++      +    + +++     LR LD+S N         L +S+      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 131 IWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH 163
             L L +  +  ++        +LQ L  D   
Sbjct: 429 EQLVLYDIYWSEEM------EDRLQALEKDKPS 455

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 9/85 (10%)

Query: 245 NLSSVEHLYLQNNALGG----SIPNTFFRGSALETLDLRDNNFSGRIPHQI-----NEHS 295
             S +  L+L +  +      S+  T     +L  LDL +N        Q+         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 296 NLRALLLRANYLQGPIPHQLCRLRK 320
            L  L+L   Y    +  +L  L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 9/108 (8%)

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK----IKDGLLRSTELMVL 181
               +    L +              + L++L+L +   S      +   LL +  L  L
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 402

Query: 182 DISNNRLSGHIPSWMG-----NFSYLQILSMSKNLLEGNIPVQFNDLL 224
           D+SNN L       +          L+ L +        +  +   L 
Sbjct: 403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 35/270 (12%), Positives = 78/270 (28%), Gaps = 16/270 (5%)

Query: 229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIP 288
           L+++  NL   +   L    V       + +   +   F     ++ +DL ++       
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTL 63

Query: 289 HQINEH-SNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKV 347
           H I    S L+ L L    L  PI + L +   L  ++LS    +         S   ++
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 348 GNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV 407
              +L    +       V +     +  QL L           +                
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSY-NFLSGSIPESFSNLKMIESLDLS 466
               +            +   E   L  +  L+LS    +          +  +++L + 
Sbjct: 184 DSVML----------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 467 HNKLNGQIPPQLTELHSLSKFDVSYNNLSG 496
               +G +        +L    ++ ++ + 
Sbjct: 234 GIVPDGTLQ---LLKEALPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 36/289 (12%), Positives = 80/289 (27%), Gaps = 18/289 (6%)

Query: 58  SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG 117
           +LD++  +   ++     ++ Q ++     ++  +  +    +  + ++ +D+S +    
Sbjct: 4   TLDLTGKNLHPDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 118 ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTE 177
                +++ C  L  L L        I       + L  L L                  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG------------- 107

Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
                     LS        N S+    +     +      +    L+L     +     
Sbjct: 108 -FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 238 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRD-NNFSGRIPHQINEHSN 296
            S +     + V      +  L       FF+ + L+ L L    +       ++ E   
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 297 LRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFW 345
           L+ L +      G +      L  L I       +         N   W
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 29/244 (11%), Positives = 71/244 (29%), Gaps = 16/244 (6%)

Query: 7   FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSF 66
           F ++++DLS++ +  +    +L   +KL+ L L     S          + +L       
Sbjct: 46  FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-------PIVNTL------- 91

Query: 67  TGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTN 126
             +    + + L      +        +  S + ++      D +  +    ++    T 
Sbjct: 92  -AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 150

Query: 127 CFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN- 185
               +     N                + L   D+            +   L  L +S  
Sbjct: 151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 210

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLN 245
             +       +G    L+ L +   + +G + +    L  L+I       ++   I    
Sbjct: 211 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKK 270

Query: 246 LSSV 249
              +
Sbjct: 271 NQEI 274

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 57/323 (17%), Positives = 94/323 (29%), Gaps = 21/323 (6%)

Query: 178 LMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLS 237
              L+++N  LS  +P    +   L+ L  S N L   +P        L+ L +  NNL 
Sbjct: 40  AHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELP---ELPQSLKSLLVDNNNLK 91

Query: 238 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNL 297
                   L  +     Q   L     ++F +   ++   L+           I   +N 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 298 RALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDE 357
              L     L               + DL  +         I   L        L  +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 358 EGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDL 417
           +   +  +         + +R +       + Q            S    +  ++     
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL----Y 267

Query: 418 SSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 477
             N  +  I S      ++  LN+S N L   +P     L   E L  S N L  ++P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPEL 322

Query: 478 LTELHSLSKFDVSYNNLSGPIPD 500
              L  L    V YN L    PD
Sbjct: 323 PQNLKQL---HVEYNPLRE-FPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 54/340 (15%), Positives = 93/340 (27%), Gaps = 36/340 (10%)

Query: 8   NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFT 67
               L+L++  L     + L E    LE L    NS +  +L      L SL +  N+  
Sbjct: 39  QAHELELNNLGL-----SSLPELPPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLK 91

Query: 68  GELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNC 127
                   +    +    + K     N             L    +        +   N 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 128 F----SLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDI 183
                 L  L      +        +    L L  +   +   +    L     L  +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 184 SNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMIST 243
            NN L           +     +   +L E    + F D                S    
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD---------------VSENIF 256

Query: 244 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLR 303
             LS +       NA    I +      +LE L++ +N     +P        L  L+  
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIAS 312

Query: 304 ANYLQGPIPHQLCRLRKLGIMDLSHNRLYG--SIPACITN 341
            N+L   +P     L++L    + +N L     IP  + +
Sbjct: 313 FNHLAE-VPELPQNLKQL---HVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 9/105 (8%)

Query: 126 NCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISN 185
               L       N    +I         L+ L + NN    ++         L  L  S 
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASF 313

Query: 186 NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILN 230
           N L+  +P    N   L+ L +  N L    P     + DL + +
Sbjct: 314 NHLA-EVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 33/206 (16%), Positives = 57/206 (27%), Gaps = 3/206 (1%)

Query: 8   NLKYLDLSHNKLAGNFPTWL--LENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNS 65
           N   L     KL            +  K+E+            +      L  + I K +
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 66  FTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT 125
               +       L  L Y+ IS    +               LD+  N     + ++   
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 149

Query: 126 NCFSLI-WLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDIS 184
                   L L+ N         +      +L   DNN+      D    ++  ++LDIS
Sbjct: 150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 209

Query: 185 NNRLSGHIPSWMGNFSYLQILSMSKN 210
             R+       + N   L+  S    
Sbjct: 210 RTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 28/230 (12%), Positives = 58/230 (25%), Gaps = 14/230 (6%)

Query: 275 TLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGS 334
               +++  +  IP  +    N   L      L+            L  +++S N +   
Sbjct: 12  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 335 IPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQ---------LRLDESDLR 385
           I A + ++L            +    +             +                 L+
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 386 WLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNF 445
            ++  ++ N        +    +      L L+ N +           Q         N 
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 446 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLS 495
           L     + F        LD+S  +++      L  L  L        NL 
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 25/238 (10%), Positives = 51/238 (21%), Gaps = 15/238 (6%)

Query: 248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYL 307
           S      Q + +   IP+   R      L               +   +L  + +  N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN---------ESLYQLDEE 358
              I   +                               +                    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 359 GADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLS 418
                 +DI+D  N     R     L +    + +N        +      +        
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 419 SNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 476
           +N L                L++S   +         NLK + +    + K   ++P 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 37/312 (11%), Positives = 68/312 (21%), Gaps = 15/312 (4%)

Query: 1   KFLRHQFNLKYLDLSHNKLAGNFPTWL---LENNTKLEVLYLINNSFSGFQLTGAQH--G 55
             L    ++K + LS N +      WL   + +   LE+    +      +    +    
Sbjct: 25  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 84

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
           LL   +           +          +    +         +                
Sbjct: 85  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 144

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
             EL+ +        +   +   N            T      L                
Sbjct: 145 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 204

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
             L+        L                          + P      L+  +L+     
Sbjct: 205 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL---KSWPNLRELGLNDCLLSARGAA 261

Query: 236 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-----SALETLDLRDNNFS--GRIP 288
                 S L    ++ L LQ N +      T           L  L+L  N FS    + 
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321

Query: 289 HQINEHSNLRAL 300
            +I E  + R  
Sbjct: 322 DEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 36/332 (10%), Positives = 90/332 (27%), Gaps = 22/332 (6%)

Query: 202 LQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTL-----NLSSVEHLYLQN 256
           L++ +++    + ++     +   ++ + +S N +       L     +   +E     +
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 257 NALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLC 316
              G            L    L+                  +  L+       P+ H   
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 317 RLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQ 376
               LG    +         A              L  +      + N  ++++  +   
Sbjct: 129 HNNGLGPQAGAKIARALQELAVN----KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 377 LR-LDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQN 435
            R L    +     + E          +Y   +       +  ++  +  +   +    N
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 436 IHGLNLSYNFLSGSIPE------SFSNLKMIESLDLSHNKLNGQIPPQLTE-----LHSL 484
           +  L L+   LS           S      +++L L +N++       L       +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 485 SKFDVSYNNLSGPIPDKEQFSTFDESSYRGNL 516
              +++ N  S      ++      +  RG L
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 336

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 24/104 (23%)

Query: 415 LDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIP---------------------ES 453
           L L+  +LT  +   +  L  +  L+LS+N L    P                     + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 454 FSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNNLSG 496
            +NL  ++ L L +N+L        L     L   ++  N+L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 133 LDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHI 192
           L L++ +    +  +   L  +  L L +N          L +   + +  +++    ++
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENV 58

Query: 193 PSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSG 238
                     ++L  +  L +            L +LN+  N+L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 180 VLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGS 239
           VL +++  L+  +   +     +  L +S N L    P     L  LE+L  S+N    +
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA-LEN 57

Query: 240 MISTLNLSSVEHLYLQNNAL-GGSIPNTFFRGSALETLDLRDNNFSG 285
           +    NL  ++ L L NN L   +          L  L+L+ N+   
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 26/238 (10%), Positives = 66/238 (27%), Gaps = 13/238 (5%)

Query: 230 NISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPH 289
           +I++      +     L++   +    + +  ++         + TL       +     
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVTT--IE 57

Query: 290 QINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGN 349
            +   +NL  L L+ N +    P +         +  +  +   +I    +         
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117

Query: 350 ESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL 409
           +        G     V   D    T    L        +              +   +  
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 410 EHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH 467
                     N+++   P  +  L N+  ++L  N +S   P   +N   +  + L++
Sbjct: 178 LKA-----DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 27/225 (12%), Positives = 63/225 (28%), Gaps = 19/225 (8%)

Query: 56  LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNF 115
            + +   K++ T  + Q     L  +  ++             +  +  L  L++  N  
Sbjct: 21  AIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 116 AGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRS 175
                          +            +           +  LD           L   
Sbjct: 76  T-------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 176 TELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENN 235
           + L VL +  N+++   P           +  ++      +         L  L   +N 
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK----LTTLKADDNK 184

Query: 236 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRD 280
           +S  +    +L ++  ++L+NN +    P      S L  + L +
Sbjct: 185 ISD-ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 414 GLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIP-ESFSNLKMIESLDLSHNKLNG 472
           GL  + +    +    +   +N+  L +        +       L  + +L +  + L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 473 QIPPQLTELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPI 523
             P        LS+ ++S+N L        Q  +  E    GN   C   +
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 3/135 (2%)

Query: 103 QGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYM-NLTQLQLLYLDN 161
            G   L  + +     L    +    +L  L + N      +    +  L +L+ L +  
Sbjct: 8   HGSSGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 162 NHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFN 221
           +       D    +  L  L++S N L       +   S  +++     L          
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 222 DLLDLEILNISENNL 236
              +  +  + E  L
Sbjct: 126 RWEEEGLGGVPEQKL 140

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 6/159 (3%)

Query: 175 STELMVLDISNNRLSGHIPSWM-GNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE 233
                 L +++N L       + G   +L  L + +N L G  P  F     ++ L + E
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 234 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQIN 292
           N +          L  ++ L L +N +   +P +F   ++L +L+L  N F+        
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 293 EHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRL 331
               LR   L     +   P    ++R + I DL H+  
Sbjct: 148 -AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEF 182

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 4/113 (3%)

Query: 419 SNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 478
           + EL         +      L+L    +   I    + L   +++D S N++  +     
Sbjct: 4   TAELIEQAAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGF 59

Query: 479 TELHSLSKFDVSYNNLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLP 531
             L  L    V+ N +       +Q           N  L          +L 
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 112

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 8/136 (5%)

Query: 177 ELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNL 236
               LD+            +   +   +L+   ++    + +   ++ +L  LN+S N L
Sbjct: 23  SQQALDLKGL----RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRL 77

Query: 237 SGS---MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE 293
                         +++ L L  N L         +G  LE L L  N+ S     Q   
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 294 HSNLRALLLRANYLQG 309
            S +R    +   L G
Sbjct: 138 ISAIRERFPKLLRLDG 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	580
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.81
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.29

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.6e-31  Score=258.09  Aligned_cols=258  Identities=35%  Similarity=0.562  Sum_probs=196.5

Q ss_pred             CCCEEEcccCCCCC--CCchhhhcCCCCCEEEccc-CcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEE
Q 036717          177 ELMVLDISNNRLSG--HIPSWMGNFSYLQILSMSK-NLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLY  253 (580)
Q Consensus       177 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  253 (580)
                      +++.|+|+++.+.+  .+|..++++++|++|++++ |.+.|.+|..|+++++|++|++++                    
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~--------------------  110 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH--------------------  110 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE--------------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcc--------------------
Confidence            56677777776665  3456666666666666664 556656666666555555555554                    


Q ss_pred             eeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCC-CEEEeeCCeec
Q 036717          254 LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKL-GIMDLSHNRLY  332 (580)
Q Consensus       254 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~  332 (580)
                         |++.+..+..+..+.+|+.+++++|.+.+.+|..+..++.++.+++++|.+++.+|..+..+..+ +.+++++|+++
T Consensus       111 ---N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         111 ---TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             ---ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             ---ccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence               44554555556666667777777777766677777777777777777777777777777766665 77888888888


Q ss_pred             CccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccc
Q 036717          333 GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM  412 (580)
Q Consensus       333 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  412 (580)
                      +..|..+..                                                                   + ..
T Consensus       188 ~~~~~~~~~-------------------------------------------------------------------l-~~  199 (313)
T d1ogqa_         188 GKIPPTFAN-------------------------------------------------------------------L-NL  199 (313)
T ss_dssp             EECCGGGGG-------------------------------------------------------------------C-CC
T ss_pred             ccccccccc-------------------------------------------------------------------c-cc
Confidence            777665433                                                                   1 23


Q ss_pred             cEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCC
Q 036717          413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN  492 (580)
Q Consensus       413 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  492 (580)
                      ..++++++...+.+|..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.+.++++|++|||++|
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            458889999999999999999999999999999987655 5888999999999999999999999999999999999999


Q ss_pred             cccccCCCCcccCCcCccccCCCCCCCCCCCCCCC
Q 036717          493 NLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC  527 (580)
Q Consensus       493 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C  527 (580)
                      +++|.+|....+..++..++.+|+.+||.|+. .|
T Consensus       279 ~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             EEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999998878888888999999999998753 66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.2e-30  Score=254.46  Aligned_cols=252  Identities=27%  Similarity=0.405  Sum_probs=177.6

Q ss_pred             CCCCEEeccCccccc--cccccccCCCCCCEEEccc-CCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcE
Q 036717          152 TQLQLLYLDNNHFSG--KIKDGLLRSTELMVLDISN-NRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEI  228 (580)
Q Consensus       152 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  228 (580)
                      .+++.|+++++.+++  .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468999999999987  4789999999999999997 8899899999999999999999999999888877877777777


Q ss_pred             EEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCc-ceeecccccc
Q 036717          229 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNL-RALLLRANYL  307 (580)
Q Consensus       229 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L-~~L~l~~n~l  307 (580)
                      +++++|.+.+                       .+|..+..++.++.+++++|.+.+.+|..+..+..+ +.++++.|++
T Consensus       130 l~l~~N~~~~-----------------------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         130 LDFSYNALSG-----------------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EECCSSEEES-----------------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             cccccccccc-----------------------cCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            7777665544                       444455555555555555555555555555555443 5555566666


Q ss_pred             cccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhh
Q 036717          308 QGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWL  387 (580)
Q Consensus       308 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (580)
                      ++..+..+..+..+ .++++++...+.+|..+..                                              
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~----------------------------------------------  219 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGS----------------------------------------------  219 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccc----------------------------------------------
Confidence            55555555554433 5666666666555543322                                              


Q ss_pred             ccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCC
Q 036717          388 VKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSH  467 (580)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  467 (580)
                                           +++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.|+++++|++|||++
T Consensus       220 ---------------------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         220 ---------------------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             ---------------------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ---------------------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence                                 4556666677776665544 466677777777777777777777777777777777777


Q ss_pred             CcccccCchhhcCCCCCCEEeccCCcccc
Q 036717          468 NKLNGQIPPQLTELHSLSKFDVSYNNLSG  496 (580)
Q Consensus       468 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  496 (580)
                      |+++|.+|+ +.++++|+.+++++|+..|
T Consensus       278 N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         278 NNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             SEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             CcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            777777764 4666777777777776433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=1.3e-28  Score=247.40  Aligned_cols=342  Identities=23%  Similarity=0.265  Sum_probs=216.0

Q ss_pred             CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717           52 AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI  131 (580)
Q Consensus        52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  131 (580)
                      .+.+|++|+++++.++ .+. .+ ..+++|++|++++|++++. + .++++++|++|++++|++. .+++  +..+++|+
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~-gl-~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DITP--LANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCT-TG-GGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred             HhCCCCEEECCCCCCC-Ccc-cc-ccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc-cccc--cccccccc
Confidence            3445666666666655 332 22 2466666666666666643 2 2666666666666666665 3333  35666666


Q ss_pred             EEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCc
Q 036717          132 WLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL  211 (580)
Q Consensus       132 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  211 (580)
                      .|+++++.+++..+  ......+.......+.+.....................     .....+...+.........|.
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccc
Confidence            66666666554222  23344555555555555433222221111111111111     111234444455555555554


Q ss_pred             CCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhh
Q 036717          212 LEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI  291 (580)
Q Consensus       212 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  291 (580)
                      ..  ....+..+++++.+++++|.+++..+. ...++|++|++++|.+++ + ..+..+++|+.+++++|.+++..  .+
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~  259 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PL  259 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             cc--cccccccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cc
Confidence            32  334456667777777777777665432 245677778888777763 2 35667778888888888877543  36


Q ss_pred             ccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhc
Q 036717          292 NEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYY  371 (580)
Q Consensus       292 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  371 (580)
                      ..+++|+.|+++++.+++..  .+..++.++.+++++|.+++ ++ .+                                
T Consensus       260 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~-~~--------------------------------  303 (384)
T d2omza2         260 SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-IS-PI--------------------------------  303 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CG-GG--------------------------------
T ss_pred             cccccCCEeeccCcccCCCC--cccccccccccccccccccc-cc-cc--------------------------------
Confidence            67778888888888777542  36677788888888887753 11 11                                


Q ss_pred             ccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccc
Q 036717          372 NSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIP  451 (580)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  451 (580)
                                                         ..+++++.|++++|++++..  .+..+++|++|++++|++++ ++
T Consensus       304 -----------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~  345 (384)
T d2omza2         304 -----------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS  345 (384)
T ss_dssp             -----------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG
T ss_pred             -----------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch
Confidence                                               11678889999999998653  38889999999999999984 44


Q ss_pred             ccccCcccCCEEECCCCcccccCchhhcCCCCCCEEeccCC
Q 036717          452 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN  492 (580)
Q Consensus       452 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  492 (580)
                       .++++++|++|++++|++++..|  +.++++|++|+|++|
T Consensus       346 -~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 -SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             58999999999999999997654  889999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=3.6e-28  Score=244.10  Aligned_cols=357  Identities=21%  Similarity=0.250  Sum_probs=268.5

Q ss_pred             ECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCc
Q 036717           13 DLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFE   92 (580)
Q Consensus        13 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~   92 (580)
                      .++.+.+++.+..   +.+.+|++|+++++.|+++.-...+++|++|++++|+++ .++.  +.++++|++|++++|++.
T Consensus        28 ~l~~~~~~~~~~~---~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEECH---HHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccCH---HHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccc
Confidence            4566677765554   356789999999999987654457899999999999998 5654  457999999999999998


Q ss_pred             cccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccc
Q 036717           93 GNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGL  172 (580)
Q Consensus        93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  172 (580)
                      +..  .++++++|+.|+++++.+++ ++.  ......+.......+.+.....................     .....+
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  171 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPL  171 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGG
T ss_pred             ccc--cccccccccccccccccccc-ccc--cccccccccccccccccccccccccccccccccccccc-----chhhhh
Confidence            643  48899999999999998874 433  24567788888888877644333322222222222221     122334


Q ss_pred             cCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEE
Q 036717          173 LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHL  252 (580)
Q Consensus       173 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  252 (580)
                      .............|...  ....+..+++++.+++++|.+++..+  +..+++|++|++++|.++..+ ....+++|+.+
T Consensus       172 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L  246 (384)
T d2omza2         172 ANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDL  246 (384)
T ss_dssp             TTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchh
Confidence            45566666666666554  34557788899999999998886543  456788999999999887653 33378899999


Q ss_pred             EeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeec
Q 036717          253 YLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLY  332 (580)
Q Consensus       253 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  332 (580)
                      ++++|.+++..  .+..+++|++|++++|++++..  .+..++.++.+.++.|.+++.  ..+..+++++.+++++|+++
T Consensus       247 ~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~  320 (384)
T d2omza2         247 DLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNIS  320 (384)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCS
T ss_pred             ccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCC
Confidence            99999988544  3778899999999999988543  367788999999999998853  45788899999999999997


Q ss_pred             CccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccc
Q 036717          333 GSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHM  412 (580)
Q Consensus       333 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  412 (580)
                      +..+  +..                                                                   +++|
T Consensus       321 ~l~~--l~~-------------------------------------------------------------------l~~L  331 (384)
T d2omza2         321 DISP--VSS-------------------------------------------------------------------LTKL  331 (384)
T ss_dssp             CCGG--GGG-------------------------------------------------------------------CTTC
T ss_pred             CCcc--ccc-------------------------------------------------------------------CCCC
Confidence            5321  211                                                                   7889


Q ss_pred             cEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCc
Q 036717          413 AGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNK  469 (580)
Q Consensus       413 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  469 (580)
                      ++|++++|++++ ++ .++++++|++|++++|++++.+|  +.++++|+.|+|++|.
T Consensus       332 ~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         332 QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            999999999984 44 68999999999999999997665  8899999999999983

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.3e-25  Score=214.70  Aligned_cols=266  Identities=20%  Similarity=0.264  Sum_probs=187.0

Q ss_pred             CCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccC
Q 036717          154 LQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE  233 (580)
Q Consensus       154 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (580)
                      .++++-++..++ .+|..+  .+++++|++++|+++...+.+|.++++|++|++++|.+....|..|..++.|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            344444444554 334433  24566666666666644444566666666666666666655566666666777777777


Q ss_pred             CcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCc--ccCchhhccCcCcceeecccccccccC
Q 036717          234 NNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFS--GRIPHQINEHSNLRALLLRANYLQGPI  311 (580)
Q Consensus       234 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~  311 (580)
                      |+++..+...  .+.++.|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.++. +
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l  165 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I  165 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             CccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence            6666554432  356777777777777666666667777778888777543  3345567778888888888888773 4


Q ss_pred             cccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhcccc
Q 036717          312 PHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQV  391 (580)
Q Consensus       312 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (580)
                      |..+  +++|+.|++++|..++..+..+..                                                  
T Consensus       166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~--------------------------------------------------  193 (305)
T d1xkua_         166 PQGL--PPSLTELHLDGNKITKVDAASLKG--------------------------------------------------  193 (305)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTGGGTT--------------------------------------------------
T ss_pred             Cccc--CCccCEEECCCCcCCCCChhHhhc--------------------------------------------------
Confidence            4332  568888888888877655544322                                                  


Q ss_pred             EEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCccc
Q 036717          392 EVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLN  471 (580)
Q Consensus       392 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  471 (580)
                                       ++.++.|++++|.+++..+..+.++++|++|+|++|.++ .+|.+|.++++|++|+|++|+|+
T Consensus       194 -----------------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         194 -----------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             -----------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             -----------------cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence                             567888999999999888888999999999999999998 56888999999999999999998


Q ss_pred             ccCchhh------cCCCCCCEEeccCCccc
Q 036717          472 GQIPPQL------TELHSLSKFDVSYNNLS  495 (580)
Q Consensus       472 ~~~p~~l------~~l~~L~~L~Ls~N~l~  495 (580)
                      ......|      ..+++|+.|+|++|+++
T Consensus       256 ~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            6544343      45678999999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=8.1e-25  Score=211.89  Aligned_cols=247  Identities=18%  Similarity=0.206  Sum_probs=112.6

Q ss_pred             CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEE
Q 036717           54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWL  133 (580)
Q Consensus        54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  133 (580)
                      +++++|++++|+++ .+|...+.++++|++|++++|.+....|..|.++++|++|++++|+++ .+|..   ....++.|
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~---~~~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK---MPKTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS---CCTTCCEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccc---hhhhhhhh
Confidence            34445555555444 444433344555555555555555444445555555555555555554 34432   12344455


Q ss_pred             EcccccCCCcCCccccCCCCCCEEeccCcccc--ccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCc
Q 036717          134 DLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFS--GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL  211 (580)
Q Consensus       134 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  211 (580)
                      ++.+|.+....+..+.....++.++...+...  ...+..+..+++|+.+++++|.+.. +|..  .+++|++|++++|.
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~  182 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNK  182 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCc
Confidence            55555444433333444444444444443222  1122233444444444444444431 2211  12344444444444


Q ss_pred             CCCcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhh
Q 036717          212 LEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQI  291 (580)
Q Consensus       212 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  291 (580)
                      .....+..|..++                       .+++|++++|.+++..+..+..+++|++|++++|+++ .+|.++
T Consensus       183 ~~~~~~~~~~~~~-----------------------~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l  238 (305)
T d1xkua_         183 ITKVDAASLKGLN-----------------------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL  238 (305)
T ss_dssp             CCEECTGGGTTCT-----------------------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred             CCCCChhHhhccc-----------------------cccccccccccccccccccccccccceeeeccccccc-cccccc
Confidence            4444444444444                       4444444444444444444444455555555555544 334444


Q ss_pred             ccCcCcceeecccccccccCccc------ccCCCCCCEEEeeCCeec
Q 036717          292 NEHSNLRALLLRANYLQGPIPHQ------LCRLRKLGIMDLSHNRLY  332 (580)
Q Consensus       292 ~~~~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l~~n~l~  332 (580)
                      ..+++|++|++++|+|+......      .....+|+.+++++|++.
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            44555555555555544322222      233455666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=214.08  Aligned_cols=209  Identities=21%  Similarity=0.207  Sum_probs=158.6

Q ss_pred             CCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCC-CCcCcccCchhhccCcCcceeec
Q 036717          225 DLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR-DNNFSGRIPHQINEHSNLRALLL  302 (580)
Q Consensus       225 ~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~~~~L~~L~l  302 (580)
                      ++++|+|++|+++..++..+ .+++|++|++++|.+....+..+.....++.++.. .+.++...+..+..+++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            44555555555555554433 55556666666666655555555566666666554 34555555666777777777777


Q ss_pred             ccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccc
Q 036717          303 RANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDES  382 (580)
Q Consensus       303 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (580)
                      ++|.+....+..+....+|+.+++++|.+++..+..+..                                         
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-----------------------------------------  151 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----------------------------------------  151 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhcc-----------------------------------------
Confidence            777777666667777788888888888886433333222                                         


Q ss_pred             hhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCE
Q 036717          383 DLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIES  462 (580)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  462 (580)
                                                +++|+.|++++|++++..+.+|.++++|+++++++|++++..|..|.++++|++
T Consensus       152 --------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         152 --------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             --------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             --------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence                                      567888999999999888899999999999999999999999999999999999


Q ss_pred             EECCCCcccccCchhhcCCCCCCEEeccCCcccccCCC
Q 036717          463 LDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIPD  500 (580)
Q Consensus       463 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  500 (580)
                      ||+++|++.+..|..|..+++|++|++++|++.|.|+.
T Consensus       206 L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            99999999999999999999999999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.6e-25  Score=209.60  Aligned_cols=224  Identities=19%  Similarity=0.184  Sum_probs=157.5

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      ..++.++++++ ++|..+   .+.+++|+|++|+|+...+.+|.++++|++|++++|.+. .++...+..+..++.++..
T Consensus        14 ~~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccc
Confidence            34566677777 777655   356788888888888666667888888888888888887 5666666777777777664


Q ss_pred             -cccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc
Q 036717          137 -NNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN  215 (580)
Q Consensus       137 -~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  215 (580)
                       .+.+....+..|.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|++++.
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence             4555555566777777888888877777655566666677777777777777766566677777777777777777766


Q ss_pred             CchhccCCCCCcEEEccCCcCccccCCcc-CCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcc
Q 036717          216 IPVQFNDLLDLEILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSG  285 (580)
Q Consensus       216 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  285 (580)
                      .+.+|.++++|+.+++++|.+++..+..+ .+++|++|++++|.+.+..+..|..+++|++|++++|.+..
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            66677777777777777777766655555 56666666666666666666666666667777776666653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=197.63  Aligned_cols=205  Identities=22%  Similarity=0.171  Sum_probs=165.2

Q ss_pred             CCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceee
Q 036717          222 DLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALL  301 (580)
Q Consensus       222 ~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  301 (580)
                      ....+.+++.+++.++.++...  .+++++|+|++|.+++..+..|..+++|++|++++|+++. ++ .+..+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            3445566677777776654332  2567888888888876666778888888888888888873 34 356788889999


Q ss_pred             cccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhccccccccccc
Q 036717          302 LRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDE  381 (580)
Q Consensus       302 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (580)
                      +++|++++ .+..+..+++|+.|++++|.+.+..+..+.                                         
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----------------------------------------  121 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR-----------------------------------------  121 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT-----------------------------------------
T ss_pred             cccccccc-cccccccccccccccccccccceeeccccc-----------------------------------------
Confidence            99888874 466788889999999999888643322211                                         


Q ss_pred             chhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCC
Q 036717          382 SDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIE  461 (580)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  461 (580)
                                                .+.+++.|++++|.+++..+..+..+++|+.+++++|++++..++.|..+++|+
T Consensus       122 --------------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~  175 (266)
T d1p9ag_         122 --------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (266)
T ss_dssp             --------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             --------------------------cccccccccccccccceeccccccccccchhcccccccccccCccccccccccc
Confidence                                      167889999999999988888899999999999999999998889999999999


Q ss_pred             EEECCCCcccccCchhhcCCCCCCEEeccCCcccccCC
Q 036717          462 SLDLSHNKLNGQIPPQLTELHSLSKFDVSYNNLSGPIP  499 (580)
Q Consensus       462 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  499 (580)
                      +|+|++|+|+ .+|+.+..+++|+.|+|++|++.|.|.
T Consensus       176 ~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             eeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            9999999999 788888899999999999999999885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=190.77  Aligned_cols=198  Identities=21%  Similarity=0.198  Sum_probs=126.0

Q ss_pred             CCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEE
Q 036717           54 HGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWL  133 (580)
Q Consensus        54 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  133 (580)
                      ..+..+|.+++.++ .+|..+   .+++++|+|++|+|++..+.+|.++++|++|+|++|.++ .++.  +..+++|++|
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L   82 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTL   82 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEE
T ss_pred             CCCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccccc
Confidence            34556677777777 677654   246777888888777665667777888888888887776 5554  3566777777


Q ss_pred             EcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCC
Q 036717          134 DLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       134 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  213 (580)
                      ++++|+++. .+..+..+++|++|++++|.+....+..+..+.++++|++++|.+....+..+..+++++.+++++|+++
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            777777763 3455666777777777777666555556666666666666666666555555566666666666666666


Q ss_pred             CcCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcC
Q 036717          214 GNIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNAL  259 (580)
Q Consensus       214 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l  259 (580)
                      +..+..|..+++|++|+|++|.++..+...+.+++|+.|+|++|.+
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            5555555555655666555555554444444444444444444433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.3e-22  Score=206.08  Aligned_cols=379  Identities=18%  Similarity=0.155  Sum_probs=207.0

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCcc----ccchhhhcCCCCCEEEcccCcCccccchHHHh----C
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEG----NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVT----N  126 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~  126 (580)
                      +|+.||+++|++++..-..+...++++++|+|++|.++.    .++..+..+++|++|||++|.++..-...+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466677777766643223333456777777777777663    23345566777777777777765321112211    2


Q ss_pred             CCCCcEEEcccccCCCc----CCccccCCCCCCEEeccCccccccccccc-----cCCCCCCEEEcccCCCCCCC----c
Q 036717          127 CFSLIWLDLSNNNFDGQ----IFPNYMNLTQLQLLYLDNNHFSGKIKDGL-----LRSTELMVLDISNNRLSGHI----P  193 (580)
Q Consensus       127 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~----~  193 (580)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.++......+     ....................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            24577777777776543    23345566777777777777653221111     11223334444333332111    1


Q ss_pred             hhhhcCCCCCEEEcccCcCCCcC----chhc-cCCCCCcEEEccCCcCccccCCc-----cCCCCCcEEEeeCCcCccc-
Q 036717          194 SWMGNFSYLQILSMSKNLLEGNI----PVQF-NDLLDLEILNISENNLSGSMIST-----LNLSSVEHLYLQNNALGGS-  262 (580)
Q Consensus       194 ~~~~~l~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~L~~L~l~~n~l~~~-  262 (580)
                      ..+.....++.++++++......    ...+ ........+++..+.+.......     ...+.++.+++.+|.+... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            22334566777777666543211    0111 11224455666665543321111     1456667777777665321 


Q ss_pred             ----CChhccCCCCccEEeCCCCcCccc----CchhhccCcCcceeecccccccccCcccc-----cCCCCCCEEEeeCC
Q 036717          263 ----IPNTFFRGSALETLDLRDNNFSGR----IPHQINEHSNLRALLLRANYLQGPIPHQL-----CRLRKLGIMDLSHN  329 (580)
Q Consensus       263 ----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n  329 (580)
                          ..........++.+++++|.+...    ....+...+.++.+++++|.++......+     .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence                222334456677777777766532    22234456677777777776653222211     12346777777777


Q ss_pred             eecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccccc
Q 036717          330 RLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVIL  409 (580)
Q Consensus       330 ~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  409 (580)
                      .++......+....                                                               ...
T Consensus       323 ~l~~~~~~~l~~~~---------------------------------------------------------------~~~  339 (460)
T d1z7xw1         323 SFTAACCSHFSSVL---------------------------------------------------------------AQN  339 (460)
T ss_dssp             CCBGGGHHHHHHHH---------------------------------------------------------------HHC
T ss_pred             chhhhhhhhccccc---------------------------------------------------------------ccc
Confidence            66533222222110                                                               014


Q ss_pred             ccccEEEccCCcceee----CCcccc-cccCCCeEecccCcceec----ccccccCcccCCEEECCCCcccccCchh---
Q 036717          410 EHMAGLDLSSNELTGN----IPSEIG-DLQNIHGLNLSYNFLSGS----IPESFSNLKMIESLDLSHNKLNGQIPPQ---  477 (580)
Q Consensus       410 ~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---  477 (580)
                      ++|+.|+|++|++++.    +++.+. ..+.|++|+|++|.++..    +++.+..+++|++|||++|+++......   
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~  419 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE  419 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHH
Confidence            5788888888888653    222332 356788888888888742    4455667788888888888887543333   


Q ss_pred             -hc-CCCCCCEEeccCCcccc
Q 036717          478 -LT-ELHSLSKFDVSYNNLSG  496 (580)
Q Consensus       478 -l~-~l~~L~~L~Ls~N~l~~  496 (580)
                       +. +...|++|++.+|++..
T Consensus       420 ~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         420 SVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHhCCCccCEEECCCCCCCH
Confidence             22 23468888888888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=1.6e-18  Score=170.64  Aligned_cols=314  Identities=25%  Similarity=0.312  Sum_probs=155.0

Q ss_pred             CCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717            8 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS   87 (580)
Q Consensus         8 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~   87 (580)
                      ++++|||+++.++ .+|+    ..++|++|+|++|+|+.+  +....+|+.|++++|+++ .++.    -.+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~l--p~~~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSC--CCCCTTCCEEECCSSCCS-CCCS----CCTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCccc--ccchhhhhhhhhhhcccc-hhhh----hcccccccccc
Confidence            4555555555554 4443    234555555555555532  233444555555555444 3321    11234455555


Q ss_pred             cCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccc
Q 036717           88 KNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGK  167 (580)
Q Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (580)
                      +|.++                         .+|.  +..+++|++|+++++.+.... .   ....+..+.+..+...  
T Consensus       107 ~n~l~-------------------------~lp~--~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~--  153 (353)
T d1jl5a_         107 NNQLE-------------------------KLPE--LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE--  153 (353)
T ss_dssp             SSCCS-------------------------SCCC--CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS--
T ss_pred             ccccc-------------------------cccc--hhhhccceeeccccccccccc-c---ccccccchhhcccccc--
Confidence            44444                         3332  234444444444444443211 1   1233444444333332  


Q ss_pred             ccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccCCcCccccCCccCCC
Q 036717          168 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISENNLSGSMISTLNLS  247 (580)
Q Consensus       168 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  247 (580)
                      ....+..++.++.+++++|..... +.   .....+.+....+.+. ..+ .+..++.++.+++++|.....+.   ...
T Consensus       154 ~~~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~~~---~~~  224 (353)
T d1jl5a_         154 ELPELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPP  224 (353)
T ss_dssp             SCCCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCT
T ss_pred             ccccccccccceeccccccccccc-cc---cccccccccccccccc-ccc-ccccccccccccccccccccccc---ccc
Confidence            122334445555555555544321 11   1122334444444332 222 23455566666666655443322   234


Q ss_pred             CCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEee
Q 036717          248 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLS  327 (580)
Q Consensus       248 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  327 (580)
                      ++..+.+.++.+.. .+.   ....+...++..+.+.+. +.   -.......++..+.+.+.    ...+++|++|+++
T Consensus       225 ~l~~~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~l-~~---l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls  292 (353)
T d1jl5a_         225 SLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL----CDLPPSLEELNVS  292 (353)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE----CCCCTTCCEEECC
T ss_pred             cccccccccccccc-ccc---cccccccccccccccccc-cc---ccchhcccccccCccccc----cccCCCCCEEECC
Confidence            55666666665542 121   123555666666554421 11   012334555555555422    2335678888888


Q ss_pred             CCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceeccc
Q 036717          328 HNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGV  407 (580)
Q Consensus       328 ~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (580)
                      +|+++ .+|..                                                                     
T Consensus       293 ~N~l~-~lp~~---------------------------------------------------------------------  302 (353)
T d1jl5a_         293 NNKLI-ELPAL---------------------------------------------------------------------  302 (353)
T ss_dssp             SSCCS-CCCCC---------------------------------------------------------------------
T ss_pred             CCccC-ccccc---------------------------------------------------------------------
Confidence            88876 34421                                                                     


Q ss_pred             ccccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECC
Q 036717          408 ILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLS  466 (580)
Q Consensus       408 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  466 (580)
                       +++|+.|++++|+++ .+|+.   +++|++|++++|+++ .+|+..   .+|+.|.+.
T Consensus       303 -~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~~  352 (353)
T d1jl5a_         303 -PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMN  352 (353)
T ss_dssp             -CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEECC
T ss_pred             -cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeECc
Confidence             467888888888888 56653   457889999999988 566543   356666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=1.2e-18  Score=171.48  Aligned_cols=313  Identities=25%  Similarity=0.347  Sum_probs=217.9

Q ss_pred             CccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           55 GLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        55 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      +++.|||+++.++ .+|+    ..++|++|++++|+|+ .+|..   ..+|+.|++++|+++ .++.    -.+.|++|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence            5778888888877 6774    2578888888888888 55654   457888899988887 5543    125699999


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEG  214 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  214 (580)
                      +++|.+.. +| .+..+++|++|+++++.+... +.   ....+..+.+..+....  ...+..++.++.+.+++|....
T Consensus       105 L~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccc-cc-chhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceecccccccccc
Confidence            99999974 34 467899999999999988743 22   35677888887776652  3457788999999999998763


Q ss_pred             cCchhccCCCCCcEEEccCCcCccccCCccCCCCCcEEEeeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhccC
Q 036717          215 NIPVQFNDLLDLEILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINEH  294 (580)
Q Consensus       215 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  294 (580)
                      . +.   .....+.+...++.+... +....++.++.+++++|.... .+.   ...++..+++.++.+.. .+.   ..
T Consensus       177 ~-~~---~~~~~~~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~-~~~---~~  243 (353)
T d1jl5a_         177 L-PD---LPLSLESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE---LP  243 (353)
T ss_dssp             C-CC---CCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             c-cc---cccccccccccccccccc-ccccccccccccccccccccc-ccc---ccccccccccccccccc-ccc---cc
Confidence            2 22   223446667766655533 334478899999999998763 333   34578889999988763 222   23


Q ss_pred             cCcceeecccccccccCcccccCC-CCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCCCCCCccchhhccc
Q 036717          295 SNLRALLLRANYLQGPIPHQLCRL-RKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGADVGNVDIRDYYNS  373 (580)
Q Consensus       295 ~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  373 (580)
                      ..+...++..+.+.+.     ..+ ......++..+.+.+ ++                                     
T Consensus       244 ~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~-~~-------------------------------------  280 (353)
T d1jl5a_         244 QSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRS-LC-------------------------------------  280 (353)
T ss_dssp             TTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSE-EC-------------------------------------
T ss_pred             cccccccccccccccc-----ccccchhcccccccCcccc-cc-------------------------------------
Confidence            4566666666554421     111 233445555554431 00                                     


Q ss_pred             ccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCcccccccCCCeEecccCcceeccccc
Q 036717          374 TVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPES  453 (580)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  453 (580)
                                                       ..+++|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|+.
T Consensus       281 ---------------------------------~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~  322 (353)
T d1jl5a_         281 ---------------------------------DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL  322 (353)
T ss_dssp             ---------------------------------CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC
T ss_pred             ---------------------------------ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc
Confidence                                             11578999999999998 56654   578999999999999 56754


Q ss_pred             ccCcccCCEEECCCCcccccCchhhcCCCCCCEEecc
Q 036717          454 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS  490 (580)
Q Consensus       454 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  490 (580)
                         +++|++|+|++|+++ .+|+.   ..+|+.|.+.
T Consensus       323 ---~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         323 ---PQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             ---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             ---cCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence               468999999999998 56653   2467777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.4e-22  Score=203.33  Aligned_cols=399  Identities=16%  Similarity=0.136  Sum_probs=215.7

Q ss_pred             CCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC------CCCCCccEEEccCCCCCccCChhHhh----
Q 036717            7 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT------GAQHGLLSLDISKNSFTGELPQNMGI----   76 (580)
Q Consensus         7 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~L~~L~L~~n~l~~~~~~~~~~----   76 (580)
                      ++|++||++.|++++..-..++..++++++|+|++|.++.....      ..+++|++|||++|.++......+..    
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46889999999998654455667889999999999988743211      36678888888888875321122222    


Q ss_pred             cCCCCcEEEcccCcCccc----cchhhhcCCCCCEEEcccCcCccccchHHHh----CCCCCcEEEcccccCCCcC----
Q 036717           77 VLQKLVYMNISKNSFEGN----IPSSIAKMQGLRFLDVSTNNFAGELSQSLVT----NCFSLIWLDLSNNNFDGQI----  144 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~----  144 (580)
                      ...+|++|++++|++++.    ++..+..+++|++|++++|.+.......+..    ..............+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            234688888888887643    3455667788888888888776322221111    1112223333222221100    


Q ss_pred             CccccCCCCCCEEeccCccccccc----cccc-cCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCcCchh
Q 036717          145 FPNYMNLTQLQLLYLDNNHFSGKI----KDGL-LRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGNIPVQ  219 (580)
Q Consensus       145 ~~~~~~l~~L~~L~l~~n~l~~~~----~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  219 (580)
                      ...+.....++.++++.+......    ...+ ........+++..+.+......                    .....
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~  221 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--------------------DLCGI  221 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--------------------HHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhh--------------------ccccc
Confidence            011122344455555444332110    0000 1112333444444433211000                    01112


Q ss_pred             ccCCCCCcEEEccCCcCccccC-----Ccc-CCCCCcEEEeeCCcCccc----CChhccCCCCccEEeCCCCcCcccCch
Q 036717          220 FNDLLDLEILNISENNLSGSMI-----STL-NLSSVEHLYLQNNALGGS----IPNTFFRGSALETLDLRDNNFSGRIPH  289 (580)
Q Consensus       220 ~~~l~~L~~L~l~~n~l~~~~~-----~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~  289 (580)
                      +...+.++.+++.+|.+.....     ... ....++.+++++|.+...    ....+...+.++.+++++|.+++....
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2233445555555544322110     001 344566666666655432    122334456677777777766533222


Q ss_pred             hh-----ccCcCcceeecccccccccCcc----cccCCCCCCEEEeeCCeecCccChhhhhhcccccCCCCccccccCCC
Q 036717          290 QI-----NEHSNLRALLLRANYLQGPIPH----QLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNESLYQLDEEGA  360 (580)
Q Consensus       290 ~~-----~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~~~~~l~~~~~  360 (580)
                      .+     ...+.|+.+++++|.++.....    .+...++|++|++++|++++.....+.....                
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~----------------  365 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG----------------  365 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT----------------
T ss_pred             hhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh----------------
Confidence            21     1234677777777776644322    3345667888888888876422222211000                


Q ss_pred             CCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceee----CCcccccccCC
Q 036717          361 DVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGN----IPSEIGDLQNI  436 (580)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L  436 (580)
                                                                    ...+.|+.|+|++|.+++.    +++.+..+++|
T Consensus       366 ----------------------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L  399 (460)
T d1z7xw1         366 ----------------------------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL  399 (460)
T ss_dssp             ----------------------------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             ----------------------------------------------cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCC
Confidence                                                          0035688899999988753    44556677899


Q ss_pred             CeEecccCcceecccccc----c-CcccCCEEECCCCcccccCchhh----cCCCCCCEE
Q 036717          437 HGLNLSYNFLSGSIPESF----S-NLKMIESLDLSHNKLNGQIPPQL----TELHSLSKF  487 (580)
Q Consensus       437 ~~L~Ls~N~l~~~~p~~~----~-~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L  487 (580)
                      ++|+|++|+++......+    . +...|+.|++++|.+....+..+    ...|+|+.|
T Consensus       400 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            999999999875433332    2 34479999999999876554443    344666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=5.5e-18  Score=155.49  Aligned_cols=186  Identities=19%  Similarity=0.282  Sum_probs=78.5

Q ss_pred             CCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEE
Q 036717           30 NNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLD  109 (580)
Q Consensus        30 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  109 (580)
                      .+.+|++|++.+|.+++++....+++|++|++++|.+++ ++.  +..+++++++++++|.++. + ..++.+++|+.++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~-~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeec-ccc--ccccccccccccccccccc-c-ccccccccccccc
Confidence            344555555555555544322344555555555554442 211  1244455555555544442 1 2344445555555


Q ss_pred             cccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCC
Q 036717          110 VSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLS  189 (580)
Q Consensus       110 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  189 (580)
                      ++++...+ ++.  +...+.++.+.++++.+..  ...+..+++|++|++++|.+.+.  ..+.++++|++|++++|+++
T Consensus       114 l~~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         114 LTSTQITD-VTP--LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             CTTSCCCC-CGG--GTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc-cch--hccccchhhhhchhhhhch--hhhhccccccccccccccccccc--hhhcccccceecccCCCccC
Confidence            54444431 111  2334444444444444432  12233444444444444444321  11344444444444444444


Q ss_pred             CCCchhhhcCCCCCEEEcccCcCCCcCchhccCCCCCcEEEc
Q 036717          190 GHIPSWMGNFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNI  231 (580)
Q Consensus       190 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  231 (580)
                      +. + .++.+++|++|++++|++++. + .+..+++|+.|++
T Consensus       187 ~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~l  224 (227)
T d1h6ua2         187 DI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTL  224 (227)
T ss_dssp             CC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEE
T ss_pred             CC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEe
Confidence            21 1 134444444444444444422 1 1344444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.1e-17  Score=153.38  Aligned_cols=189  Identities=18%  Similarity=0.253  Sum_probs=159.0

Q ss_pred             ccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcE
Q 036717            4 RHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVY   83 (580)
Q Consensus         4 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   83 (580)
                      ..+++|+.|++++|.|+ .++.  ++.+++|++|++++|.+++......+++|+++++++|.++ .++. + ..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~-~i~~-l-~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK-NVSA-I-AGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS-CCGG-G-TTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecccccccccccccccccccccc-cccc-c-cccccccc
Confidence            45789999999999998 6653  5689999999999999998765678899999999999988 5653 3 37999999


Q ss_pred             EEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcc
Q 036717           84 MNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNH  163 (580)
Q Consensus        84 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (580)
                      ++++++...+.  ..+...+.++.+.++.+.+.. ...  +..+++|++|++++|.+.+.  ..+.++++|++|++++|+
T Consensus       112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~--~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc--chhccccchhhhhchhhhhch-hhh--hccccccccccccccccccc--hhhcccccceecccCCCc
Confidence            99999988754  457788999999999998873 332  46889999999999998743  458899999999999999


Q ss_pred             ccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccc
Q 036717          164 FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSK  209 (580)
Q Consensus       164 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  209 (580)
                      +++. + .+..+++|++|++++|++++. + .++++++|+.|++++
T Consensus       185 l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            9854 3 378899999999999999854 3 388999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-18  Score=161.76  Aligned_cols=220  Identities=15%  Similarity=0.131  Sum_probs=119.9

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      +.++.++..++ .+|..++   +++++|++++|+|+...+.+|.++++|++|++++|.+...++...|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45556655555 5665442   3566666666666644444566666666666666665544444445555555555544


Q ss_pred             c-ccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc
Q 036717          137 N-NNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN  215 (580)
Q Consensus       137 ~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  215 (580)
                      . |.+....+..|.++++|+++++++|.+....+.  .                     .+..++.+..+..+++.+...
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~--~---------------------~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV--H---------------------KIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCC--T---------------------TTCBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhcccccc--c---------------------ccccccccccccccccccccc
Confidence            3 344444444455555555555555554422111  1                     112223333333344444433


Q ss_pred             CchhccCCC-CCcEEEccCCcCccccCCccCCCCCcEEE-eeCCcCcccCChhccCCCCccEEeCCCCcCcccCchhhcc
Q 036717          216 IPVQFNDLL-DLEILNISENNLSGSMISTLNLSSVEHLY-LQNNALGGSIPNTFFRGSALETLDLRDNNFSGRIPHQINE  293 (580)
Q Consensus       216 ~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~-l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  293 (580)
                      .+..|..++ .++.+++++|.++......+..+++.++. +.+|+++...+..|.++++|++|++++|+++...+..+..
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~  223 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN  223 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence            334444433 56666666666666655555555555553 4556676444455777788888888888877544555666


Q ss_pred             CcCcceeecc
Q 036717          294 HSNLRALLLR  303 (580)
Q Consensus       294 ~~~L~~L~l~  303 (580)
                      +++|+.+++.
T Consensus       224 l~~L~~l~~~  233 (242)
T d1xwdc1         224 LKKLRARSTY  233 (242)
T ss_dssp             CCEEESSSEE
T ss_pred             CcccccCcCC
Confidence            6666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-18  Score=161.41  Aligned_cols=103  Identities=18%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC--CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcc
Q 036717           10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT--GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNIS   87 (580)
Q Consensus        10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~   87 (580)
                      ++++.++..++ .+|..++   +++++|++++|.++.++..  ..+++|++|++++|.+...++...+..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45555555555 5554322   3455555555555443221  2344555555555544433444333444455554443


Q ss_pred             c-CcCccccchhhhcCCCCCEEEcccCcCc
Q 036717           88 K-NSFEGNIPSSIAKMQGLRFLDVSTNNFA  116 (580)
Q Consensus        88 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~  116 (580)
                      . |.+....+..|.++++|+++++++|.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccchhhhc
Confidence            2 3344344444445555555555554444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=3.5e-18  Score=152.23  Aligned_cols=90  Identities=24%  Similarity=0.258  Sum_probs=53.5

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEEe
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD  488 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  488 (580)
                      +++|+.|+|++|++++..+..|.++++|++|+|++|+|+++.|+.|.++++|++|+|++|.+....+... -...++.+.
T Consensus        77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~  155 (192)
T d1w8aa_          77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKS  155 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHC
T ss_pred             ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-Hhhhhhhhc
Confidence            4556666666666666666666666666666666666666666666666666666666666654322111 112344455


Q ss_pred             ccCCcccccCC
Q 036717          489 VSYNNLSGPIP  499 (580)
Q Consensus       489 Ls~N~l~~~~p  499 (580)
                      +..|.++|..|
T Consensus       156 l~~~~~~c~~p  166 (192)
T d1w8aa_         156 LNGGAARCGAP  166 (192)
T ss_dssp             CSGGGCBBCSS
T ss_pred             ccCCCeEeCCC
Confidence            56666666555

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.2e-17  Score=149.20  Aligned_cols=180  Identities=21%  Similarity=0.299  Sum_probs=119.9

Q ss_pred             EccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCcc
Q 036717           38 YLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAG  117 (580)
Q Consensus        38 ~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  117 (580)
                      ++..+.+++......+.+|+.|++++|.+. .++ .+ ..+++|++|++++|++++..  .++.+++|++|++++|+++ 
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQ-GI-QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-  103 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCCC-Cch-hH-hhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-
Confidence            444555544311124556777777777766 333 22 35777777777777777532  3567777777777777776 


Q ss_pred             ccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhh
Q 036717          118 ELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG  197 (580)
Q Consensus       118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  197 (580)
                      .++.  +..+++|+.|++++|.+..  ...+..+++++.+++++|.+++.  ..+..+++|+.+++++|++++. + .++
T Consensus       104 ~l~~--l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~  175 (210)
T d1h6ta2         104 DLSS--LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLA  175 (210)
T ss_dssp             CGGG--GTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGT
T ss_pred             cccc--ccccccccccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-ccc
Confidence            4553  4667777788877777653  34566777788888877777642  3456677888888888877743 2 277


Q ss_pred             cCCCCCEEEcccCcCCCcCchhccCCCCCcEEEccC
Q 036717          198 NFSYLQILSMSKNLLEGNIPVQFNDLLDLEILNISE  233 (580)
Q Consensus       198 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (580)
                      ++++|++|++++|.++. ++ .+..+++|++|++++
T Consensus       176 ~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            78888888888888763 33 577788888888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=3.5e-17  Score=147.78  Aligned_cols=181  Identities=19%  Similarity=0.263  Sum_probs=144.9

Q ss_pred             EECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcC
Q 036717           12 LDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSF   91 (580)
Q Consensus        12 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l   91 (580)
                      .++..+.+++.++..   .+.+|++|++++|.++++.....+++|++|++++|+++ .++. + ..+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~~---~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~-~l~~-~-~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP-L-ANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECHH---HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCHH---HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCcccc-Cccc-c-ccCccccccccccccc
Confidence            356667777555542   46788999999999887754467889999999999998 4553 2 4689999999999999


Q ss_pred             ccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCcccccccccc
Q 036717           92 EGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDG  171 (580)
Q Consensus        92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (580)
                      ++ +| .+..+++|+.|++++|.+. .++.  +..++.++.+++++|.+++  +..+..+++|+++++++|++++. + .
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~-~~~~--l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~  173 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-P  173 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-G
T ss_pred             cc-cc-ccccccccccccccccccc-cccc--ccccccccccccccccccc--ccccccccccccccccccccccc-c-c
Confidence            85 44 5888999999999999886 5553  5788999999999998874  34567889999999999999854 3 3


Q ss_pred             ccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEccc
Q 036717          172 LLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSK  209 (580)
Q Consensus       172 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  209 (580)
                      +.++++|++|++++|.+++ ++ .+..+++|++|++++
T Consensus       174 l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            7889999999999999984 44 588999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.6e-17  Score=143.61  Aligned_cols=162  Identities=24%  Similarity=0.303  Sum_probs=92.8

Q ss_pred             CCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCc
Q 036717           52 AQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLI  131 (580)
Q Consensus        52 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  131 (580)
                      .++++++|++++|.+. .++ .+ ..+++|++|++++|++++..  .++++++|++|++++|.+. .++.  +.+++.|+
T Consensus        38 ~l~~l~~L~l~~~~i~-~l~-~l-~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             HhcCCCEEECCCCCCC-Ccc-cc-ccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc--cccccccc
Confidence            3445555555555554 332 12 24566666666666666432  2566666666666666655 3443  45666666


Q ss_pred             EEEcccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCc
Q 036717          132 WLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNL  211 (580)
Q Consensus       132 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  211 (580)
                      .|++++|.+..  ...+..+++|+.|++++|.+...  +.+..+++++.|++++|++++. + .++++++|++|++++|+
T Consensus       110 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc--ccccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCC
Confidence            66666665543  23355666666666666666532  2356666666666666666643 2 26666677777777776


Q ss_pred             CCCcCchhccCCCCCcEE
Q 036717          212 LEGNIPVQFNDLLDLEIL  229 (580)
Q Consensus       212 l~~~~~~~~~~l~~L~~L  229 (580)
                      +++ ++ .++.+++|++|
T Consensus       184 i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         184 VSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCC-CG-GGGGCTTCSEE
T ss_pred             CCC-Cc-cccCCCCCCcC
Confidence            653 22 35666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.3e-18  Score=159.97  Aligned_cols=223  Identities=18%  Similarity=0.165  Sum_probs=149.7

Q ss_pred             CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCC-CCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEccc
Q 036717           10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLT-GAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISK   88 (580)
Q Consensus        10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~   88 (580)
                      +.||++++.+.+.....+..  .....+.++...+...... ....+|++||++++.+++.....++..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            57999999887555554443  2456777777665543222 25678999999999887655566677899999999999


Q ss_pred             CcCccccchhhhcCCCCCEEEcccC-cCccccchHHHhCCCCCcEEEccccc-CCCcC-Ccccc-CCCCCCEEeccCc--
Q 036717           89 NSFEGNIPSSIAKMQGLRFLDVSTN-NFAGELSQSLVTNCFSLIWLDLSNNN-FDGQI-FPNYM-NLTQLQLLYLDNN--  162 (580)
Q Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~-~l~~L~~L~l~~n--  162 (580)
                      +.+++..+..++.+++|++|+++++ .+++..-..+...+++|++|++++|. +++.. ...+. ..++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            9998888889999999999999986 55533333445778999999999864 43211 11222 3467888888764  


Q ss_pred             ccccc-ccccccCCCCCCEEEcccCC-CCCCCchhhhcCCCCCEEEcccC-cCCCcCchhccCCCCCcEEEccCC
Q 036717          163 HFSGK-IKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSYLQILSMSKN-LLEGNIPVQFNDLLDLEILNISEN  234 (580)
Q Consensus       163 ~l~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n  234 (580)
                      .+++. +......+++|++|++++|. +++.....+..+++|++|++++| .+++.....++.+++|+.|+++++
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            23322 22223456777777777753 55555556667777777777774 454444445556666666666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.1e-16  Score=143.15  Aligned_cols=178  Identities=22%  Similarity=0.263  Sum_probs=145.6

Q ss_pred             EEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCc
Q 036717           11 YLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNS   90 (580)
Q Consensus        11 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~   90 (580)
                      .+.++.+.+++.++.   ..++++++|++++|.++.+.....+++|++|++++|++++ ++.  +..+++|++|++++|.
T Consensus        22 ~~~l~~~~~~~~~~~---~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCSSTTSEECH---HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhCCCCCCCccCH---HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccC-ccc--ccCCcccccccccccc
Confidence            345677788755443   3678999999999999887555688999999999999984 443  3579999999999999


Q ss_pred             CccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcccccCCCcCCccccCCCCCCEEeccCccccccccc
Q 036717           91 FEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKD  170 (580)
Q Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (580)
                      +... + .++++++|+.|+++++... .++.  +..+++|+.|++++|.+..  .+.+..+++|++|++.+|++++..  
T Consensus        96 ~~~~-~-~l~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~--  166 (199)
T d2omxa2          96 IADI-T-PLANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK--  166 (199)
T ss_dssp             CCCC-G-GGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG--
T ss_pred             cccc-c-ccccccccccccccccccc-cccc--cchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc--
Confidence            8843 3 5889999999999999887 4443  5789999999999999864  356889999999999999998643  


Q ss_pred             cccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEE
Q 036717          171 GLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQIL  205 (580)
Q Consensus       171 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  205 (580)
                      .+.++++|++|++++|++++ ++ .++.+++|++|
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            48899999999999999985 44 58889999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=8.9e-18  Score=149.55  Aligned_cols=172  Identities=15%  Similarity=0.276  Sum_probs=113.8

Q ss_pred             ccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCcc-ccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEE
Q 036717           56 LLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEG-NIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLD  134 (580)
Q Consensus        56 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  134 (580)
                      .+.++.++++++ .+|..+   .+++++|+|++|+|++ ..+..|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceee
Confidence            456777777777 677654   2577778888887764 33556677788888888887777 45555567777788888


Q ss_pred             cccccCCCcCCccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCc-hhhhcCCCCCEEEcccCcCC
Q 036717          135 LSNNNFDGQIFPNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSYLQILSMSKNLLE  213 (580)
Q Consensus       135 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~  213 (580)
                      +++|+++...+.+|.++++|++|+|++|++++..+++|..+++|+++++++|.+..... .++.  ..++.+.+..+.+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCB
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeE
Confidence            88888777667777788888888888888877777777778888888888887763322 1221  22444455555554


Q ss_pred             CcCchhccCCCCCcEEEccCCcCc
Q 036717          214 GNIPVQFNDLLDLEILNISENNLS  237 (580)
Q Consensus       214 ~~~~~~~~~l~~L~~L~l~~n~l~  237 (580)
                      ...|..   +..++.++++.+.+.
T Consensus       163 c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         163 CGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             BCSSTT---TTTSBGGGSCTTTCC
T ss_pred             eCCChh---hcCCEeeecCHhhCc
Confidence            444433   334455556655554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.1e-17  Score=153.50  Aligned_cols=222  Identities=15%  Similarity=0.162  Sum_probs=118.7

Q ss_pred             cEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEcc
Q 036717           57 LSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLS  136 (580)
Q Consensus        57 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  136 (580)
                      +.+|++++.+.......+..  ..+..+.++...+.... .......+|++||++++.+++.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46777777665433333332  24556666666554322 2333456788888888877755555667788888888888


Q ss_pred             cccCCCcCCccccCCCCCCEEeccCc-cccccc-cccccCCCCCCEEEcccCC-CCCC-Cchhhhc-CCCCCEEEcccCc
Q 036717          137 NNNFDGQIFPNYMNLTQLQLLYLDNN-HFSGKI-KDGLLRSTELMVLDISNNR-LSGH-IPSWMGN-FSYLQILSMSKNL  211 (580)
Q Consensus       137 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~-l~~L~~L~l~~n~  211 (580)
                      +|.+.+..+..+..+++|++|+++++ .+++.. ......+++|++|++++|. +++. ....+.. .++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            88877666666777788888888774 454321 1223456777777777753 3211 1122222 3567777776542


Q ss_pred             --CCCc-CchhccCCCCCcEEEccCCc-CccccCCcc-CCCCCcEEEeeCC-cCcccCChhccCCCCccEEeCCCC
Q 036717          212 --LEGN-IPVQFNDLLDLEILNISENN-LSGSMISTL-NLSSVEHLYLQNN-ALGGSIPNTFFRGSALETLDLRDN  281 (580)
Q Consensus       212 --l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n  281 (580)
                        ++.. +...+..+++|++|++++|. +++.....+ .+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              2211 11222345555555555432 332222222 3444444444443 333333333444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-15  Score=129.96  Aligned_cols=128  Identities=15%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             cccCCCCCEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCc
Q 036717            3 LRHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLV   82 (580)
Q Consensus         3 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   82 (580)
                      |.++.++++|+|++|+|+ .++. .+..+++|+.|+|++|.++.++....+++|++|++++|.++ .++..++..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCccCCcccCcchhhhhccccccc-CCCccccccccccc
Confidence            456677888888888887 6664 44578888888888888887654457778888888888887 56666666678888


Q ss_pred             EEEcccCcCcccc-chhhhcCCCCCEEEcccCcCccccch---HHHhCCCCCcEEE
Q 036717           83 YMNISKNSFEGNI-PSSIAKMQGLRFLDVSTNNFAGELSQ---SLVTNCFSLIWLD  134 (580)
Q Consensus        83 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~  134 (580)
                      +|++++|+++... ...++.+++|++|++++|.++ ..+.   ..+..+++|++||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            8888888877432 145677788888888888776 4442   2345666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=8.3e-15  Score=143.12  Aligned_cols=233  Identities=18%  Similarity=0.227  Sum_probs=143.0

Q ss_pred             hCCCCCcEEEccCCcccCCC------CCCCCCCccEEEccCCCCCc---cCChh------HhhcCCCCcEEEcccCcCcc
Q 036717           29 ENNTKLEVLYLINNSFSGFQ------LTGAQHGLLSLDISKNSFTG---ELPQN------MGIVLQKLVYMNISKNSFEG   93 (580)
Q Consensus        29 ~~l~~L~~L~L~~n~l~~~~------~~~~~~~L~~L~L~~n~l~~---~~~~~------~~~~l~~L~~L~l~~n~l~~   93 (580)
                      .....|++|+|++|.+....      .....++|+.++++++....   ..+..      ....+++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            34566666666666554321      11245666677766654321   11111      11246677778887777764


Q ss_pred             c----cchhhhcCCCCCEEEcccCcCccccchH------------HHhCCCCCcEEEcccccCCCcCC----ccccCCCC
Q 036717           94 N----IPSSIAKMQGLRFLDVSTNNFAGELSQS------------LVTNCFSLIWLDLSNNNFDGQIF----PNYMNLTQ  153 (580)
Q Consensus        94 ~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~  153 (580)
                      .    +...+..+++|++|++++|.+.......            .....+.|+.+++++|.+.....    ..+...+.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            3    2334456777888888777664211111            12345678888888887764322    23445678


Q ss_pred             CCEEeccCcccccc-----ccccccCCCCCCEEEcccCCCCCC----CchhhhcCCCCCEEEcccCcCCCcCc----hhc
Q 036717          154 LQLLYLDNNHFSGK-----IKDGLLRSTELMVLDISNNRLSGH----IPSWMGNFSYLQILSMSKNLLEGNIP----VQF  220 (580)
Q Consensus       154 L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~  220 (580)
                      |++|++++|.++..     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.+.+...    ..+
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l  267 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  267 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHh
Confidence            88888888877632     234456678888888888877532    23456678888888888888765422    233


Q ss_pred             cC--CCCCcEEEccCCcCccccCCcc------CCCCCcEEEeeCCcCcc
Q 036717          221 ND--LLDLEILNISENNLSGSMISTL------NLSSVEHLYLQNNALGG  261 (580)
Q Consensus       221 ~~--l~~L~~L~l~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~  261 (580)
                      ..  .+.|++|++++|.++......+      +.+.|++|++++|.+..
T Consensus       268 ~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            32  3568899999988875432221      46789999999998864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=4.4e-15  Score=145.08  Aligned_cols=246  Identities=20%  Similarity=0.207  Sum_probs=129.2

Q ss_pred             cCCCCcEEEcccCcCcccc----chhhhcCCCCCEEEcccCcCcc---ccch------HHHhCCCCCcEEEcccccCCCc
Q 036717           77 VLQKLVYMNISKNSFEGNI----PSSIAKMQGLRFLDVSTNNFAG---ELSQ------SLVTNCFSLIWLDLSNNNFDGQ  143 (580)
Q Consensus        77 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~---~~~~------~~~~~l~~L~~L~L~~n~l~~~  143 (580)
                      ....++.|+|++|.+....    ...+...++|+.++++++....   ..+.      ..+..+++|++|++++|.+...
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            5677888888888775332    2345556778888887664331   1111      1123455666666666665542


Q ss_pred             CC----ccccCCCCCCEEeccCccccccccccccCCCCCCEEEcccCCCCCCCchhhhcCCCCCEEEcccCcCCCc----
Q 036717          144 IF----PNYMNLTQLQLLYLDNNHFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSYLQILSMSKNLLEGN----  215 (580)
Q Consensus       144 ~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----  215 (580)
                      ..    ..+...++|++|++++|.+.......+...  +..+         .........+.|+.+.+++|.+...    
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQEL---------AVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHH---------HHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             cccchhhhhcccccchheeccccccccccccccccc--cccc---------ccccccccCcccceeeccccccccccccc
Confidence            21    122344556666665555432111000000  0000         0000012234455555555554321    


Q ss_pred             CchhccCCCCCcEEEccCCcCcccc-----CC-ccCCCCCcEEEeeCCcCccc----CChhccCCCCccEEeCCCCcCcc
Q 036717          216 IPVQFNDLLDLEILNISENNLSGSM-----IS-TLNLSSVEHLYLQNNALGGS----IPNTFFRGSALETLDLRDNNFSG  285 (580)
Q Consensus       216 ~~~~~~~l~~L~~L~l~~n~l~~~~-----~~-~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~  285 (580)
                      +...+..++.++.|++++|.+....     .. ....++|+.|++++|.++..    +...+..+++|++|++++|.+++
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            1222334455666666666554321     11 11556677777777766532    33455667788888888888775


Q ss_pred             cCchh----hcc--CcCcceeecccccccccC----ccccc-CCCCCCEEEeeCCeecC
Q 036717          286 RIPHQ----INE--HSNLRALLLRANYLQGPI----PHQLC-RLRKLGIMDLSHNRLYG  333 (580)
Q Consensus       286 ~~~~~----~~~--~~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~  333 (580)
                      .....    +..  .+.|++|++++|.++...    ...+. +++.|+.|++++|.+..
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            43222    222  356888888888876432    23332 56788999999998863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1e-14  Score=124.82  Aligned_cols=84  Identities=19%  Similarity=0.224  Sum_probs=39.6

Q ss_pred             CCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcE
Q 036717           53 QHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIW  132 (580)
Q Consensus        53 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  132 (580)
                      +.++++|||++|+|+ .++. .+..+++|++|++++|+|+..  +.+..+++|++|++++|.++ .++..++..+++|++
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   91 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             cCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccccccc
Confidence            334555555555554 3432 223445555555555555422  23444555555555555554 344433444445555


Q ss_pred             EEcccccCC
Q 036717          133 LDLSNNNFD  141 (580)
Q Consensus       133 L~L~~n~l~  141 (580)
                      |++++|+++
T Consensus        92 L~L~~N~i~  100 (162)
T d1a9na_          92 LILTNNSLV  100 (162)
T ss_dssp             EECCSCCCC
T ss_pred             ceecccccc
Confidence            555554444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.8e-14  Score=113.67  Aligned_cols=101  Identities=24%  Similarity=0.342  Sum_probs=49.5

Q ss_pred             EEEccCCCCCccCChhHhhcCCCCcEEEcccCcCccccchhhhcCCCCCEEEcccCcCccccchHHHhCCCCCcEEEccc
Q 036717           58 SLDISKNSFTGELPQNMGIVLQKLVYMNISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQSLVTNCFSLIWLDLSN  137 (580)
Q Consensus        58 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  137 (580)
                      .|++++|+++ .++. + ..+++|++|++++|+++ .+|..++.+++|++|++++|.++ .++.  +..+++|++|++++
T Consensus         2 ~L~Ls~n~l~-~l~~-l-~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCS
T ss_pred             EEEcCCCCCC-CCcc-c-ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeEECCC
Confidence            4455555554 3332 2 24555555555555555 33445555555555555555555 3332  34555555555555


Q ss_pred             ccCCCcC-CccccCCCCCCEEeccCcccc
Q 036717          138 NNFDGQI-FPNYMNLTQLQLLYLDNNHFS  165 (580)
Q Consensus       138 n~l~~~~-~~~~~~l~~L~~L~l~~n~l~  165 (580)
                      |+++... ...+..+++|++|++++|.++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            5554322 133444555555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=7.6e-14  Score=113.39  Aligned_cols=102  Identities=25%  Similarity=0.376  Sum_probs=49.6

Q ss_pred             CEEECCCCCCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEEcccC
Q 036717           10 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMNISKN   89 (580)
Q Consensus        10 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n   89 (580)
                      |+|+|++|+++ .++.  ++.+++|++|++++|+++.                       +|..+ ..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~~-----------------------lp~~~-~~l~~L~~L~l~~N   53 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRA-----------------------LPPAL-AALRCLEVLQASDN   53 (124)
T ss_dssp             SEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCCC-----------------------CCGGG-GGCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCcc--cccCCCCCEEECCCCccCc-----------------------chhhh-hhhhcccccccccc
Confidence            45666666665 4443  3455555555555555554                       44332 23455555555555


Q ss_pred             cCccccchhhhcCCCCCEEEcccCcCccccch-HHHhCCCCCcEEEcccccCC
Q 036717           90 SFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ-SLVTNCFSLIWLDLSNNNFD  141 (580)
Q Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~  141 (580)
                      .+++ +| .++.+++|++|++++|++. .++. ..+..+++|++|++++|+++
T Consensus        54 ~i~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          54 ALEN-VD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCC-CG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cccc-cC-ccccccccCeEECCCCccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            5542 22 3445555555555555554 2221 22344555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.38  E-value=3.8e-14  Score=125.77  Aligned_cols=143  Identities=22%  Similarity=0.294  Sum_probs=91.4

Q ss_pred             ccEEeCCCC--cCcccCchhhccCcCcceeecccccccccCcccccCCCCCCEEEeeCCeecCccChhhhhhcccccCCC
Q 036717          273 LETLDLRDN--NFSGRIPHQINEHSNLRALLLRANYLQGPIPHQLCRLRKLGIMDLSHNRLYGSIPACITNSLFWKVGNE  350 (580)
Q Consensus       273 L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~~~~~~  350 (580)
                      ++.+++.+.  .+. .++..+..+++|++|++++|.|+. ++ .+..+++|+.|++++|.++ .+|.....         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc---------
Confidence            444555443  222 445667777777777777777763 33 4677777788888777775 33322111         


Q ss_pred             CccccccCCCCCCCccchhhcccccccccccchhhhhccccEEEEeeccccceecccccccccEEEccCCcceeeCCccc
Q 036717          351 SLYQLDEEGADVGNVDIRDYYNSTVQLRLDESDLRWLVKQVEVNFMTKNRYESYKGVILEHMAGLDLSSNELTGNIPSEI  430 (580)
Q Consensus       351 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  430 (580)
                                                                                ++.|+.|++++|+++..  ..+
T Consensus        92 ----------------------------------------------------------~~~L~~L~l~~N~i~~l--~~~  111 (198)
T d1m9la_          92 ----------------------------------------------------------ADTLEELWISYNQIASL--SGI  111 (198)
T ss_dssp             ----------------------------------------------------------HHHCCEEECSEEECCCH--HHH
T ss_pred             ----------------------------------------------------------ccccccccccccccccc--ccc
Confidence                                                                      35677778888877742  346


Q ss_pred             ccccCCCeEecccCcceeccc-ccccCcccCCEEECCCCcccccCchh----------hcCCCCCCEEe
Q 036717          431 GDLQNIHGLNLSYNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ----------LTELHSLSKFD  488 (580)
Q Consensus       431 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  488 (580)
                      ..+++|+.|++++|+++.... ..+..+++|+.|+|++|.+....+..          +..+|+|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777788888888887774322 45777788888888888776543322          55677777775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.4e-13  Score=111.61  Aligned_cols=90  Identities=21%  Similarity=0.217  Sum_probs=78.9

Q ss_pred             cccccEEEccCC-cceeeCCcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEE
Q 036717          409 LEHMAGLDLSSN-ELTGNIPSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF  487 (580)
Q Consensus       409 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  487 (580)
                      +++++.|++++| .++...+..|.++++|+.|+|++|+|+.+.|..|.++++|++|+|++|+|+...+..+..+ +|++|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccc
Confidence            578889999766 4887777889999999999999999998889999999999999999999996666666554 79999


Q ss_pred             eccCCcccccCC
Q 036717          488 DVSYNNLSGPIP  499 (580)
Q Consensus       488 ~Ls~N~l~~~~p  499 (580)
                      +|++|++.|.|.
T Consensus       109 ~L~~Np~~C~C~  120 (156)
T d2ifga3         109 VLSGNPLHCSCA  120 (156)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             ccCCCcccCCch
Confidence            999999998773

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=2.9e-14  Score=126.54  Aligned_cols=127  Identities=20%  Similarity=0.167  Sum_probs=76.0

Q ss_pred             CCCEEECCCC--CCcccCchHHhhCCCCCcEEEccCCcccCCCCCCCCCCccEEEccCCCCCccCChhHhhcCCCCcEEE
Q 036717            8 NLKYLDLSHN--KLAGNFPTWLLENNTKLEVLYLINNSFSGFQLTGAQHGLLSLDISKNSFTGELPQNMGIVLQKLVYMN   85 (580)
Q Consensus         8 ~L~~L~Ls~n--~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~   85 (580)
                      ..+.+++++.  .+. .++.+ +..+++|++|+|++|+|+.++....+++|++|++++|.++ .+|... ..+++|++|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~s-l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDAT-LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHH-HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEEC-SCSSHH-HHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhH-HhcccccceeECcccCCCCcccccCCccccChhhcccccc-cccccc-cccccccccc
Confidence            4555666654  243 44444 3477888888888887776533335666777777777666 455332 2345667777


Q ss_pred             cccCcCccccchhhhcCCCCCEEEcccCcCccccch-HHHhCCCCCcEEEcccccCC
Q 036717           86 ISKNSFEGNIPSSIAKMQGLRFLDVSTNNFAGELSQ-SLVTNCFSLIWLDLSNNNFD  141 (580)
Q Consensus        86 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~  141 (580)
                      +++|+++..  ..+..+++|++|++++|+++ .++. ..+..+++|++|++++|++.
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccc--ccccccccccccccccchhc-cccccccccCCCccceeecCCCccc
Confidence            777766632  34666666777777766665 3332 33456666666666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.3e-12  Score=106.41  Aligned_cols=110  Identities=17%  Similarity=0.185  Sum_probs=88.8

Q ss_pred             cccccEEEccCCcceeeCCcccccccCCCeEecccC-cceecccccccCcccCCEEECCCCcccccCchhhcCCCCCCEE
Q 036717          409 LEHMAGLDLSSNELTGNIPSEIGDLQNIHGLNLSYN-FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF  487 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  487 (580)
                      +...+.++++++++. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|+|++|+|+.+.|..|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            345567899999988 67888999999999999876 5998888899999999999999999998889999999999999


Q ss_pred             eccCCcccccCCCCcccCCcCccccCCCCCCC
Q 036717          488 DVSYNNLSGPIPDKEQFSTFDESSYRGNLHLC  519 (580)
Q Consensus       488 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc  519 (580)
                      +|++|+++...+.......+....+.+|++-|
T Consensus        86 ~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          86 NLSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             ECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             eccCCCCcccChhhhccccccccccCCCcccC
Confidence            99999999443333323344455555665544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1e-07  Score=80.47  Aligned_cols=80  Identities=25%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             cccccEEEccCCcceeeC--CcccccccCCCeEecccCcceecccccccCcccCCEEECCCCcccccCc-------hhhc
Q 036717          409 LEHMAGLDLSSNELTGNI--PSEIGDLQNIHGLNLSYNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-------PQLT  479 (580)
Q Consensus       409 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-------~~l~  479 (580)
                      ++.|+.|+|++|+++...  +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.+.+...       ..+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            567777777777776432  3445667777777777777774433333344457777777777765433       2245


Q ss_pred             CCCCCCEEe
Q 036717          480 ELHSLSKFD  488 (580)
Q Consensus       480 ~l~~L~~L~  488 (580)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            567777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.7e-08  Score=83.28  Aligned_cols=39  Identities=26%  Similarity=0.437  Sum_probs=15.3

Q ss_pred             CCCCcEEEcccCcCccc--cchhhhcCCCCCEEEcccCcCc
Q 036717           78 LQKLVYMNISKNSFEGN--IPSSIAKMQGLRFLDVSTNNFA  116 (580)
Q Consensus        78 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~  116 (580)
                      +++|++|++++|+|+..  ++..+..+++|+.|++++|.++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            44444444444444322  1222333444444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.90  E-value=4.6e-06  Score=70.37  Aligned_cols=43  Identities=16%  Similarity=0.201  Sum_probs=22.9

Q ss_pred             ccCCCCCEEECCCC-CCcccCchH---HhhCCCCCcEEEccCCcccC
Q 036717            4 RHQFNLKYLDLSHN-KLAGNFPTW---LLENNTKLEVLYLINNSFSG   46 (580)
Q Consensus         4 ~~~~~L~~L~Ls~n-~i~~~~~~~---~~~~l~~L~~L~L~~n~l~~   46 (580)
                      .+.++|++|+|+++ .++...-..   .+...+.|++|+|++|.+..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~   58 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD   58 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccch
Confidence            34567777777763 454322111   22345556666666665553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.81  E-value=1.3e-05  Score=67.53  Aligned_cols=18  Identities=0%  Similarity=0.137  Sum_probs=9.2

Q ss_pred             hhcCCCCCEEEcccCcCc
Q 036717           99 IAKMQGLRFLDVSTNNFA  116 (580)
Q Consensus        99 ~~~l~~L~~L~L~~n~l~  116 (580)
                      +...+.|++|+|++|.+.
T Consensus        40 L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCccceeeccccccc
Confidence            444455555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.33  E-value=5.1e-05  Score=63.67  Aligned_cols=87  Identities=11%  Similarity=0.147  Sum_probs=41.6

Q ss_pred             CCCccEEEccCCCCCccCChh---HhhcCCCCcEEEcccCcCccc----cchhhhcCCCCCEEEcc--cCcCccccch--
Q 036717           53 QHGLLSLDISKNSFTGELPQN---MGIVLQKLVYMNISKNSFEGN----IPSSIAKMQGLRFLDVS--TNNFAGELSQ--  121 (580)
Q Consensus        53 ~~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~--~n~l~~~~~~--  121 (580)
                      .++|+.|++++|.++......   .....+.++.+++++|.+...    +...+...++|+.++|+  +|.+......  
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            344555555555544221111   112345666666666665422    22345556666665443  4444422111  


Q ss_pred             -HHHhCCCCCcEEEccccc
Q 036717          122 -SLVTNCFSLIWLDLSNNN  139 (580)
Q Consensus       122 -~~~~~l~~L~~L~L~~n~  139 (580)
                       ..+...+.|+.|+++.+.
T Consensus       125 a~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCCCcCEEeCcCCC
Confidence             123456677777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.29  E-value=8.8e-05  Score=62.15  Aligned_cols=65  Identities=8%  Similarity=0.041  Sum_probs=28.6

Q ss_pred             cCCCCcEEEccc-CcCccc----cchhhhcCCCCCEEEcccCcCccccchH---HHhCCCCCcEEEcccccCC
Q 036717           77 VLQKLVYMNISK-NSFEGN----IPSSIAKMQGLRFLDVSTNNFAGELSQS---LVTNCFSLIWLDLSNNNFD  141 (580)
Q Consensus        77 ~l~~L~~L~l~~-n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~l~  141 (580)
                      +.+.|++|++++ +.++..    +..++...++|++|++++|.++......   .+...+.++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            345555555554 233311    1223344555666666666554321111   1233344555555554443