Citrus Sinensis ID: 036729

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970
Protein Sequence
MGSIQMSHIMLFFVTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISNSDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRVTVPSQSQGEVQNHILHFKMDSKAMNNTRVRV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccHHcccccccccccccccEEEEcccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEccccEEcccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEcccccccccccHHHHccccccEEccccccccccccHHccccccccHHHccccccccccccccHHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccEEccccccEEEEEccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEcEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHcccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHccccccEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEcccccccccccccccccEEEEEcccccccccccHHHccccccEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccHHHHHcccccEEEccccEEEccccHHHHHccccHHHHccccccccccccHHHHccccccEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEcHHHHHHHHcccccccEEEcccccEEEEEEcccccEEEEEEEccccc
Coil and Loop (DISEMBL)
MGSIQMSHIMLFFVTLAVALGGISTDSFWLLRIKQElvdptgileNWSARAHMcswhgvtcsddqkhvvglnlsssglsgsisrdflnltsletldlssnsltglipselgqLQNLRILLLYsnsfsgkippeigflNKLQVLRigdnllwgeipphignlTELRELAIAYCQLngsipveignlkhltsLDLQMNKLSGLIPEAIHGCEELQKFAAsnnmlegtiPSSIVLLKSLQILNLAnnslsgsipVELSHLFNLRYLNLlgnifdgeipsELNKLAQLEEldlsknnlsGSISLLNTQLKNLETlvlsdnaftgsipikfclNNSSLQQLILARNklsgefplellrcsslqqldlsdnsfkgelprsLDKLEELTDLLlnnnsftgsfppeignlsklenlflfdnmitgkipveiGKLQTLSAIYLydnqmsgsipreltncsglteidffgnhfsgsipeTMGKLKNLVILQLRqndlsgpipaslgYCKRLQQIALadnklsgsvpltFRFLSELYLITLynnsfkgplppslfqlkkLRIInfshnkfsgsiypltgsnsltaldltnnsfsgpipselAMSRNLSRLRLAHNhltgnipsefgkltelnfldlsfnsftgqiapqlSKCAKLAHLLLsnneltgtipFWLGslqeigeldlssnnfngtvpaeiGNCSKLLKLSlrgnnlsgkippeignlTALNVLNLQrnslsgnipsTIQQCKKLYELRLsenfftgsipadlgrLTELQVILDLsknnfsgeippslgsllKLERLNISYNQlqgqvpaslgkltSLHVLnlsnnhlqgqlpltfsgfplssflgnaklcgppllscselsgqkvkrlSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSisnsdngnngsdqqkreeeklvyeddhkrrngefwrvtvpsqsqgevQNHILHFKMdskamnntrvrv
Flexible Loop (DISEMBL)
MGSIQMSHIMLFFVTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISNsdngnngsdqqkreEEKLVYEDDHKRRNGEfwrvtvpsqsqgevQNHIlhfkmdskamnntrvrv
Low Complexity Region (SEG)
MGSIQMSHIMLFFVTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVglnlsssglsgsisRDFLNLTSLETLDLSSNSLTGLIPSElgqlqnlrilllYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCsslqqldlsdNSFKGELPRSldkleeltdlllnnnSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKltslhvlnlsnnhlQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVsisnsdngnngsdQQKREEEKLVYEDDHKRRNGEFWRVTVPSQSQGEVQNHILHFKMDSKAMNNTRVRV
Disordered region (IsUnstruct)
******SHIMLFFVTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLD****************LEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT*****************LSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSI********************************FWRVT******************************
Disordered Region (DISOPRED)
*GSIQMSHIMLFFVTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCG***********************VIITAILFTSAVICLIMLYIMLRIWL*********************REEEKLVYEDDHKRRNGEFWRVTVPSQSQGEVQNHILHFKMDSKAMNNTRVR*
Disordered Region (DISEMBL)
MGSIQMSHIMLFFVTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISNS***************KLVYEDDHKRRNGEFWRVTVPSQSQGEVQNHILHFKMDSKAMNNTRVRV
Disordered Region (DISPRO)
*GSIQMSHIMLFFVTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWR***************QQKREEEKLVYEDDHKRRNGEFWRVTVPSQSQGEVQNHILHFKMDSKAMNNTR***
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSIQMSHIMLFFVTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISNSDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRVTVPSQSQGEVQNHILHFKMDSKAMNNTRVRV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	970	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	yes	no	0.896	0.696	0.494	0.0
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.908	0.703	0.480	0.0
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.719	0.633	0.367	1e-119
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.728	0.641	0.379	1e-119
O49318	1124	Probable leucine-rich rep	no	no	0.650	0.561	0.401	1e-117
Q9FL28	1173	LRR receptor-like serine/	no	no	0.812	0.671	0.339	1e-113
Q9LP24	1120	Probable leucine-rich rep	no	no	0.741	0.641	0.342	1e-106
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.688	0.594	0.358	1e-102
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.671	0.622	0.356	1e-100
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.761	0.619	0.349	1e-100

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/884 (49%), Positives = 585/884 (66%), Gaps = 14/884 (1%)

Query: 21  GGISTDSFWLLRIKQELV------DPTGILENW-SARAHMCSWHGVTCSDDQK-HVVGLN 72
           G I+ D   LL +K+ LV      DP   L  W S   + CSW GVTC +     V+ LN
Sbjct: 21  GIINNDLQTLLEVKKSLVTNPQEDDP---LRQWNSDNINYCSWTGVTCDNTGLFRVIALN 77

Query: 73  LSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPP 132
           L+  GL+GSIS  F    +L  LDLSSN+L G IP+ L  L +L  L L+SN  +G+IP 
Sbjct: 78  LTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPS 137

Query: 133 EIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLD 192
           ++G L  ++ LRIGDN L G+IP  +GNL  L+ LA+A C+L G IP ++G L  + SL 
Sbjct: 138 QLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLI 197

Query: 193 LQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV 252
           LQ N L G IP  +  C +L  F A+ NML GTIP+ +  L++L+ILNLANNSL+G IP 
Sbjct: 198 LQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPS 257

Query: 253 ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLV 312
           +L  +  L+YL+L+ N   G IP  L  L  L+ LDLS NNL+G I      +  L  LV
Sbjct: 258 QLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLV 317

Query: 313 LSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELP 372
           L++N  +GS+P   C NN++L+QL+L+  +LSGE P+EL +C SL+QLDLS+NS  G +P
Sbjct: 318 LANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIP 377

Query: 373 RSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAI 432
            +L +L ELTDL L+NN+  G+  P I NL+ L+ L L+ N + GK+P EI  L+ L  +
Sbjct: 378 EALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVL 437

Query: 433 YLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIP 492
           +LY+N+ SG IP+E+ NC+ L  ID FGNHF G IP ++G+LK L +L LRQN+L G +P
Sbjct: 438 FLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLP 497

Query: 493 ASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRII 552
           ASLG C +L  + LADN+LSGS+P +F FL  L  + LYNNS +G LP SL  L+ L  I
Sbjct: 498 ASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRI 557

Query: 553 NFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPS 612
           N SHN+ +G+I+PL GS+S  + D+TNN F   IP EL  S+NL RLRL  N LTG IP 
Sbjct: 558 NLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPW 617

Query: 613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672
             GK+ EL+ LD+S N+ TG I  QL  C KL H+ L+NN L+G IP WLG L ++GEL 
Sbjct: 618 TLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELK 677

Query: 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS 732
           LSSN F  ++P E+ NC+KLL LSL GN+L+G IP EIGNL ALNVLNL +N  SG++P 
Sbjct: 678 LSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQ 737

Query: 733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
            + +  KLYELRLS N  TG IP ++G+L +LQ  LDLS NNF+G+IP ++G+L KLE L
Sbjct: 738 AMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETL 797

Query: 793 NISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLS 852
           ++S+NQL G+VP S+G + SL  LN+S N+L G+L   FS +P  SFLGN  LCG PL  
Sbjct: 798 DLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCGSPLSR 857

Query: 853 CSEL-SGQKVKRLSNTAVVVI--ITAILFTSAVICLIMLYIMLR 893
           C+ + S  K + LS  +VV+I  I+A+     +I +I L+   R
Sbjct: 858 CNRVRSNNKQQGLSARSVVIISAISALTAIGLMILVIALFFKQR 901

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/893 (48%), Positives = 572/893 (64%), Gaps = 12/893 (1%)

Query: 9   IMLFFVTLAVALG----GISTDSFWLLRIKQELV---DPTGILENW-SARAHMCSWHGVT 60
           + LFF+  +  LG    G   D   LL +K   +       +L +W S     C+W GVT
Sbjct: 8   LALFFLCFSSGLGSGQPGQRDDLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVT 67

Query: 61  CSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILL 120
           C    + ++GLNLS  GL+GSIS       +L  +DLSSN L G IP+ L  L +    L
Sbjct: 68  CGG--REIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESL 125

Query: 121 LYS-NSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIP 179
               N  SG IP ++G L  L+ L++GDN L G IP   GNL  L+ LA+A C+L G IP
Sbjct: 126 HLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIP 185

Query: 180 VEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQIL 239
              G L  L +L LQ N+L G IP  I  C  L  FAA+ N L G++P+ +  LK+LQ L
Sbjct: 186 SRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTL 245

Query: 240 NLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS 299
           NL +NS SG IP +L  L +++YLNL+GN   G IP  L +LA L+ LDLS NNL+G I 
Sbjct: 246 NLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIH 305

Query: 300 LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQ 359
               ++  LE LVL+ N  +GS+P   C NN+SL+QL L+  +LSGE P E+  C SL+ 
Sbjct: 306 EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKL 365

Query: 360 LDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKI 419
           LDLS+N+  G++P SL +L ELT+L LNNNS  G+    I NL+ L+   L+ N + GK+
Sbjct: 366 LDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKV 425

Query: 420 PVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVI 479
           P EIG L  L  +YLY+N+ SG +P E+ NC+ L EID++GN  SG IP ++G+LK+L  
Sbjct: 426 PKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTR 485

Query: 480 LQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPL 539
           L LR+N+L G IPASLG C ++  I LADN+LSGS+P +F FL+ L L  +YNNS +G L
Sbjct: 486 LHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNL 545

Query: 540 PPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRL 599
           P SL  LK L  INFS NKF+GSI PL GS+S  + D+T N F G IP EL  S NL RL
Sbjct: 546 PDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRL 605

Query: 600 RLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP 659
           RL  N  TG IP  FGK++EL+ LD+S NS +G I  +L  C KL H+ L+NN L+G IP
Sbjct: 606 RLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIP 665

Query: 660 FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVL 719
            WLG L  +GEL LSSN F G++P EI + + +L L L GN+L+G IP EIGNL ALN L
Sbjct: 666 TWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL 725

Query: 720 NLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI 779
           NL+ N LSG +PSTI +  KL+ELRLS N  TG IP ++G+L +LQ  LDLS NNF+G I
Sbjct: 726 NLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRI 785

Query: 780 PPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSF 839
           P ++ +L KLE L++S+NQL G+VP  +G + SL  LNLS N+L+G+L   FS +   +F
Sbjct: 786 PSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAF 845

Query: 840 LGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIML 892
           +GNA LCG PL  C+  +G K +R  +   VVII+AI   +A+  ++++ I+ 
Sbjct: 846 VGNAGLCGSPLSHCNR-AGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILF 897

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  429 bits (1104), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 272/741 (36%), Positives = 404/741 (54%), Gaps = 43/741 (5%)

Query: 159 GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAAS 218
           G L    +L    C   G   +   +L+ +TS+DL    LSG +   I     L+K   S
Sbjct: 43  GYLASWNQLDSNPCNWTG---IACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVS 99

Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSEL 278
            N + G IP  + L +SL++L+L  N   G IP++L+ +  L+ L L  N   G IP ++
Sbjct: 100 TNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQI 159

Query: 279 NKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLIL 338
             L+ L+EL +  NNL+G I     +L+ L  +    N F+G IP               
Sbjct: 160 GNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIP--------------- 204

Query: 339 ARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE 398
             +++SG        C SL+ L L++N  +G LP+ L+KL+ LTDL+L  N  +G  PP 
Sbjct: 205 --SEISG--------CESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPS 254

Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDF 458
           +GN+S+LE L L +N  TG IP EIGKL  +  +YLY NQ++G IPRE+ N     EIDF
Sbjct: 255 VGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDF 314

Query: 459 FGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLT 518
             N  +G IP+  G + NL +L L +N L GPIP  LG    L+++ L+ N+L+G++P  
Sbjct: 315 SENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQE 374

Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSI-YPLTGSNSLTALDL 577
            +FL  L  + L++N  +G +PP +       +++ S N  SG I        +L  L L
Sbjct: 375 LQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSL 434

Query: 578 TNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ 637
            +N  SG IP +L   ++L++L L  N LTG++P E   L  L  L+L  N  +G I+  
Sbjct: 435 GSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISAD 494

Query: 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSL 697
           L K   L  L L+NN  TG IP  +G+L +I   ++SSN   G +P E+G+C  + +L L
Sbjct: 495 LGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDL 554

Query: 698 RGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD 757
            GN  SG I  E+G L  L +L L  N L+G IP +     +L EL+L  N  + +IP +
Sbjct: 555 SGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVE 614

Query: 758 LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLN 817
           LG+LT LQ+ L++S NN SG IP SLG+L  LE L ++ N+L G++PAS+G L SL + N
Sbjct: 615 LGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICN 674

Query: 818 LSNNHLQGQLPLT--FSGFPLSSFLGNAKLCGP------PLLSCSE------LSGQKVKR 863
           +SNN+L G +P T  F     S+F GN  LC        PL+  S+      ++G + ++
Sbjct: 675 ISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGSQRQK 734

Query: 864 LSNTAVVVIITAILFTSAVIC 884
           +     +VI +  L T   +C
Sbjct: 735 ILTITCIVIGSVFLITFLGLC 755

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 273/720 (37%), Positives = 402/720 (55%), Gaps = 13/720 (1%)

Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
           NL++  S D      +G++        E+     S+ +L G +  SI  L  L+ L+L+ 
Sbjct: 47  NLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSY 106

Query: 244 NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
           N LSG IP E+ +  +L  L L  N FDGEIP E+ KL  LE L +  N +SGS+ +   
Sbjct: 107 NGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIG 166

Query: 304 QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLS 363
            L +L  LV   N  +G +P +   N   L      +N +SG  P E+  C SL  L L+
Sbjct: 167 NLLSLSQLVTYSNNISGQLP-RSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLA 225

Query: 364 DNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEI 423
            N   GELP+ +  L++L+ ++L  N F+G  P EI N + LE L L+ N + G IP E+
Sbjct: 226 QNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKEL 285

Query: 424 GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLR 483
           G LQ+L  +YLY N ++G+IPRE+ N S   EIDF  N  +G IP  +G ++ L +L L 
Sbjct: 286 GDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLF 345

Query: 484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSL 543
           +N L+G IP  L   K L ++ L+ N L+G +PL F++L  L+++ L+ NS  G +PP L
Sbjct: 346 ENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL 405

Query: 544 FQLKKLRIINFSHNKFSGSI--YPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRL 601
                L +++ S N  SG I  Y    SN +  L+L  N+ SG IP+ +   + L +LRL
Sbjct: 406 GWYSDLWVLDMSDNHLSGRIPSYLCLHSN-MIILNLGTNNLSGNIPTGITTCKTLVQLRL 464

Query: 602 AHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFW 661
           A N+L G  PS   K   +  ++L  N F G I  ++  C+ L  L L++N  TG +P  
Sbjct: 465 ARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPRE 524

Query: 662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL 721
           +G L ++G L++SSN   G VP+EI NC  L +L +  NN SG +P E+G+L  L +L L
Sbjct: 525 IGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKL 584

Query: 722 QRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP 781
             N+LSG IP  +    +L EL++  N F GSIP +LG LT LQ+ L+LS N  +GEIPP
Sbjct: 585 SNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPP 644

Query: 782 SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLG 841
            L +L+ LE L ++ N L G++P+S   L+SL   N S N L G +PL      +SSF+G
Sbjct: 645 ELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL-LRNISMSSFIG 703

Query: 842 NAKLCGPPLLSC--------SELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLR 893
           N  LCGPPL  C        S+ +G+     S+  + +    I   S ++  +++Y+M R
Sbjct: 704 NEGLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMRR 763

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/635 (40%), Positives = 367/635 (57%), Gaps = 4/635 (0%)

Query: 222 LEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKL 281
           L G +  SI  L +L  LNLA N+L+G IP E+ +   L  + L  N F G IP E+NKL
Sbjct: 97  LSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKL 156

Query: 282 AQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN 341
           +QL   ++  N LSG +      L NLE LV   N  TG +P     N + L      +N
Sbjct: 157 SQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLG-NLNKLTTFRAGQN 215

Query: 342 KLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGN 401
             SG  P E+ +C +L+ L L+ N   GELP+ +  L +L +++L  N F+G  P +IGN
Sbjct: 216 DFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGN 275

Query: 402 LSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGN 461
           L+ LE L L+ N + G IP EIG +++L  +YLY NQ++G+IP+EL   S + EIDF  N
Sbjct: 276 LTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSEN 335

Query: 462 HFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRF 521
             SG IP  + K+  L +L L QN L+G IP  L   + L ++ L+ N L+G +P  F+ 
Sbjct: 336 LLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQN 395

Query: 522 LSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNS-LTALDLTNN 580
           L+ +  + L++NS  G +P  L     L +++FS N+ SG I P     S L  L+L +N
Sbjct: 396 LTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSN 455

Query: 581 SFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK 640
              G IP  +   ++L +LR+  N LTG  P+E  KL  L+ ++L  N F+G + P++  
Sbjct: 456 RIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGT 515

Query: 641 CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN 700
           C KL  L L+ N+ +  +P  +  L  +   ++SSN+  G +P+EI NC  L +L L  N
Sbjct: 516 CQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRN 575

Query: 701 NLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGR 760
           +  G +PPE+G+L  L +L L  N  SGNIP TI     L EL++  N F+GSIP  LG 
Sbjct: 576 SFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGL 635

Query: 761 LTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN 820
           L+ LQ+ ++LS N+FSGEIPP +G+L  L  L+++ N L G++P +   L+SL   N S 
Sbjct: 636 LSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSY 695

Query: 821 NHLQGQLPLT--FSGFPLSSFLGNAKLCGPPLLSC 853
           N+L GQLP T  F    L+SFLGN  LCG  L SC
Sbjct: 696 NNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSC 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  410 bits (1054), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 297/875 (33%), Positives = 434/875 (49%), Gaps = 87/875 (9%)

Query: 9   IMLFFVTLAVALGGISTDSFWLLRIKQELV-DPTGILENWSARAHM--CSWHGVTCSDDQ 65
           +  FF  +A+A      +   L   K  +  DP G+L +W+    +  C+W G+TC D  
Sbjct: 13  LTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITC-DST 71

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
            HVV ++L                                                    
Sbjct: 72  GHVVSVSL------------------------------------------------LEKQ 83

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
             G + P I  L  LQVL +  N   G+IP  IG LTEL +L +     +GSIP  I  L
Sbjct: 84  LEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWEL 143

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
           K++  LDL+ N LSG +PE I     L       N L G IP  +  L  LQ+   A N 
Sbjct: 144 KNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNH 203

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL 305
           L+GSIPV +  L NL  L+L GN   G+IP +   L  L+ L L++N L G I       
Sbjct: 204 LTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNC 263

Query: 306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365
            +L  L L DN  TG IP +   N   LQ L + +NKL+   P  L R + L  L LS+N
Sbjct: 264 SSLVQLELYDNQLTGKIPAELG-NLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSEN 322

Query: 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK 425
              G +   +  LE L  L L++N+FTG FP  I NL  L  L +  N I+G++P ++G 
Sbjct: 323 HLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGL 382

Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
           L  L  +  +DN ++G IP  ++NC+GL  +D   N  +G IP   G++ NL  + + +N
Sbjct: 383 LTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRM-NLTFISIGRN 441

Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ 545
             +G IP  +  C  L+ +++ADN L+G+                        L P + +
Sbjct: 442 HFTGEIPDDIFNCSNLETLSVADNNLTGT------------------------LKPLIGK 477

Query: 546 LKKLRIINFSHNKFSGSIYPLTGS-NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHN 604
           L+KLRI+  S+N  +G I    G+   L  L L +N F+G IP E++    L  LR+  N
Sbjct: 478 LQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSN 537

Query: 605 HLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS 664
            L G IP E   +  L+ LDLS N F+GQI    SK   L +L L  N+  G+IP  L S
Sbjct: 538 DLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKS 597

Query: 665 LQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN--LSGKIPPEIGNLTALNVLNLQ 722
           L  +   D+S N   GT+P E+    K ++L L  +N  L+G IP E+G L  +  ++L 
Sbjct: 598 LSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLS 657

Query: 723 RNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPS 782
            N  SG+IP ++Q CK ++ L  S+N  +G IP ++ +  ++ + L+LS+N+FSGEIP S
Sbjct: 658 NNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQS 717

Query: 783 LGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLT--FSGFPLSSFL 840
            G++  L  L++S N L G++P SL  L++L  L L++N+L+G +P +  F     S  +
Sbjct: 718 FGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLM 777

Query: 841 GNAKLCG--PPLLSCSELSGQKVKRLSNTAVVVII 873
           GN  LCG   PL  C+    QK    S    V++I
Sbjct: 778 GNTDLCGSKKPLKPCT--IKQKSSHFSKRTRVILI 810

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 283/827 (34%), Positives = 417/827 (50%), Gaps = 108/827 (13%)

Query: 54  CSWHGVTCSDDQKHVVGLNLSSSGLSGSISR-DFLNLTSLETLDLSSNSLTGLIPSELGQ 112
            SW+GV+C + +  +  LNL+++G+ G+     F++L++L  +DLS              
Sbjct: 66  TSWYGVSC-NSRGSIEELNLTNTGIEGTFQDFPFISLSNLAYVDLSM------------- 111

Query: 113 LQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC 172
                                              NLL G IPP  GNL++L    ++  
Sbjct: 112 -----------------------------------NLLSGTIPPQFGNLSKLIYFDLSTN 136

Query: 173 QLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVL 232
            L G I   +GNLK+LT L L  N L+ +IP  +   E                      
Sbjct: 137 HLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNME---------------------- 174

Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKN 292
             S+  L L+ N L+GSIP  L +L NL  L L  N   G IP EL  +  + +L LS+N
Sbjct: 175 --SMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQN 232

Query: 293 NLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELL 352
            L+GSI      LKNL  L L +N  TG IP +   N  S+  L L++NKL+G  P  L 
Sbjct: 233 KLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIG-NMESMTNLALSQNKLTGSIPSSLG 291

Query: 353 RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD 412
              +L  L L  N   G +P  L  +E + DL L+NN  TGS P  +GNL  L  L+L++
Sbjct: 292 NLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYE 351

Query: 413 NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMG 472
           N +TG IP E+G ++++  + L +N+++GSIP    N   LT +  + N+ +G IP+ +G
Sbjct: 352 NYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELG 411

Query: 473 KLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYN 532
            +++++ L L QN L+G +P S G   +L+ + L  N LSG++P      S L  + L  
Sbjct: 412 NMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDT 471

Query: 533 NSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAM 592
           N+F G  P ++ + +KL+ I+  +N   G                       PIP  L  
Sbjct: 472 NNFTGFFPETVCKGRKLQNISLDYNHLEG-----------------------PIPKSLRD 508

Query: 593 SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652
            ++L R R   N  TG+I   FG   +LNF+D S N F G+I+    K  KL  L++SNN
Sbjct: 509 CKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNN 568

Query: 653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGN 712
            +TG IP  + ++ ++ ELDLS+NN  G +P  IGN + L +L L GN LSG++P  +  
Sbjct: 569 NITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSF 628

Query: 713 LTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSK 772
           LT L  L+L  N+ S  IP T     KL+++ LS N F GSIP  L +LT+L   LDLS 
Sbjct: 629 LTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQ-LDLSH 686

Query: 773 NNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP--LT 830
           N   GEIP  L SL  L++L++S+N L G +P +   + +L  +++SNN L+G LP   T
Sbjct: 687 NQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPT 746

Query: 831 FSGFPLSSFLGNAKLCG----PPLLSCSELSGQKVKRLSNTAVVVII 873
           F      +   N  LC       L  C EL  +K K+  N  V +++
Sbjct: 747 FRKATADALEENIGLCSNIPKQRLKPCREL--KKPKKNGNLVVWILV 791

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 259/723 (35%), Positives = 374/723 (51%), Gaps = 55/723 (7%)

Query: 40  PTGILENW---SARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLD 96
           P  +   W   ++ A  C+W G+TC DD K+V  LN + S +SG +  +   L SL+ LD
Sbjct: 47  PPQVTSTWKINASEATPCNWFGITC-DDSKNVASLNFTRSRVSGQLGPEIGELKSLQILD 105

Query: 97  LSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPP 156
           LS+N+ +G IPS LG    L  L L  N FS KIP  +  L +L+VL +  N L GE+P 
Sbjct: 106 LSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPE 165

Query: 157 HIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFA 216
            +  + +L+ L + Y  L G IP  IG+ K L  L +  N+ SG IPE+I     LQ   
Sbjct: 166 SLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQILY 225

Query: 217 ASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPS 276
              N L G++P S+ LL +L  L + NNSL G +     +  NL  L+L  N F+G +P 
Sbjct: 226 LHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVPP 285

Query: 277 ELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQL 336
            L   + L+ L +   NLSG+I      LKNL  L LS+N  +GSIP             
Sbjct: 286 ALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPA------------ 333

Query: 337 ILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFP 396
                        EL  CSSL  L L+DN   G +P +L KL +L  L L  N F+G  P
Sbjct: 334 -------------ELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIP 380

Query: 397 PEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEI 456
            EI     L  L ++ N +TG++PVE+ +++ L    L++N   G+IP  L   S L E+
Sbjct: 381 IEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEV 440

Query: 457 DFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
           DF GN  +G IP  +   + L IL L  N L G IPAS+G+CK +++  L +N LSG +P
Sbjct: 441 DFIGNKLTGEIPPNLCHGRKLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLLP 500

Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
             F     L  +   +N+F+GP+P SL   K L  IN S N+F+G               
Sbjct: 501 -EFSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQ-------------- 545

Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
                    IP +L   +NL  + L+ N L G++P++      L   D+ FNS  G +  
Sbjct: 546 ---------IPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPS 596

Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL-KL 695
             S    L  L+LS N  +G IP +L  L+++  L ++ N F G +P+ IG    L+  L
Sbjct: 597 NFSNWKGLTTLVLSENRFSGGIPQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIYDL 656

Query: 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755
            L GN L+G+IP ++G+L  L  LN+  N+L+G++ S ++    L  + +S N FTG IP
Sbjct: 657 DLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSL-SVLKGLTSLLHVDVSNNQFTGPIP 715

Query: 756 ADL 758
            +L
Sbjct: 716 DNL 718

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 239/671 (35%), Positives = 360/671 (53%), Gaps = 20/671 (2%)

Query: 278 LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI 337
            + L  L  +DLS N  SG+IS L  +   LE   LS N   G IP +   + S+L  L 
Sbjct: 114 FSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELG-DLSNLDTLH 172

Query: 338 LARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPP 397
           L  NKL+G  P E+ R + + ++ + DN   G +P S   L +L +L L  NS +GS P 
Sbjct: 173 LVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPS 232

Query: 398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID 457
           EIGNL  L  L L  N +TGKIP   G L+ ++ + +++NQ+SG IP E+ N + L  + 
Sbjct: 233 EIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLS 292

Query: 458 FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL 517
              N  +G IP T+G +K L +L L  N L+G IP  LG  + +  + +++NKL+G VP 
Sbjct: 293 LHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPD 352

Query: 518 TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSI-YPLTGSNSLTALD 576
           +F  L+ L  + L +N   GP+PP +    +L ++    N F+G +   +     L  L 
Sbjct: 353 SFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLT 412

Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
           L +N F GP+P  L   ++L R+R   N  +G+I   FG    LNF+DLS N+F GQ++ 
Sbjct: 413 LDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSA 472

Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
              +  KL   +LSNN +TG IP  + ++ ++ +LDLSSN   G +P  I N +++ KL 
Sbjct: 473 NWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQ 532

Query: 697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA 756
           L GN LSGKIP  I  LT L  L+L  N  S  IP T+    +LY + LS N    +IP 
Sbjct: 533 LNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPE 592

Query: 757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVL 816
            L +L++LQ +LDLS N   GEI     SL  LERL++S+N L GQ+P S   + +L  +
Sbjct: 593 GLTKLSQLQ-MLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHV 651

Query: 817 NLSNNHLQGQLP--LTFSGFPLSSFLGNAKLCGP-----PLLSCSELSGQKVKRLSNTAV 869
           ++S+N+LQG +P    F   P  +F GN  LCG       L  CS  S +K  +  N  +
Sbjct: 652 DVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLII 711

Query: 870 VVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISNSDNGNNGSDQQKREEEKLVYEDDH 929
            +++  I        +I+L +   I++ +R+ +    ++    +D +   E   ++  D 
Sbjct: 712 YILVPII------GAIIILSVCAGIFICFRKRTKQIEEH----TDSESGGETLSIFSFDG 761

Query: 930 KRRNGEFWRVT 940
           K R  E  + T
Sbjct: 762 KVRYQEIIKAT 772

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 275/786 (34%), Positives = 396/786 (50%), Gaps = 47/786 (5%)

Query: 23  ISTDSFWLLRIKQELVDPTGILENWSARAHM-CSWHGVTC-------------------- 61
           +S+++  L+  K+ L +P+ +     + +   C W GVTC                    
Sbjct: 23  LSSETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTCLLGRVNSLSLPSLSLRGQIP 82

Query: 62  --SDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRIL 119
                 K++  L L+ +  SG I  +  NL  L+TLDLS NSLTGL+P  L +L  L  L
Sbjct: 83  KEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYL 142

Query: 120 LLYSNSFSGKIPPEIGF-LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSI 178
            L  N FSG +PP     L  L  L + +N L GEIPP IG L+ L  L +     +G I
Sbjct: 143 DLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQI 202

Query: 179 PVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQI 238
           P EIGN+  L +        +G +P+ I   + L K   S N L+ +IP S   L +L I
Sbjct: 203 PSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSI 262

Query: 239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
           LNL +  L G IP EL +  +L+ L L  N   G +P EL+++  L      +N LSGS+
Sbjct: 263 LNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLT-FSAERNQLSGSL 321

Query: 299 SLLNTQLKNLETLVLSDNAFTGSIP--IKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
                + K L++L+L++N F+G IP  I+ C     L+ L LA N LSG  P EL    S
Sbjct: 322 PSWMGKWKVLDSLLLANNRFSGEIPHEIEDC---PMLKHLSLASNLLSGSIPRELCGSGS 378

Query: 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMIT 416
           L+ +DLS N   G +    D    L +LLL NN   GS P ++  L  L  L L  N  T
Sbjct: 379 LEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKL-PLMALDLDSNNFT 437

Query: 417 GKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKN 476
           G+IP  + K   L       N++ G +P E+ N + L  +    N  +G IP  +GKL +
Sbjct: 438 GEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTS 497

Query: 477 LVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK 536
           L +L L  N   G IP  LG C  L  + L  N L G +P     L++L  + L  N+  
Sbjct: 498 LSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLS 557

Query: 537 GPLP--PSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSR 594
           G +P  PS +   ++ + + S  +  G              DL+ N  SGPIP EL    
Sbjct: 558 GSIPSKPSAY-FHQIEMPDLSFLQHHG------------IFDLSYNRLSGPIPEELGECL 604

Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
            L  + L++NHL+G IP+   +LT L  LDLS N+ TG I  ++    KL  L L+NN+L
Sbjct: 605 VLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQL 664

Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT 714
            G IP   G L  + +L+L+ N  +G VPA +GN  +L  + L  NNLSG++  E+  + 
Sbjct: 665 NGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTME 724

Query: 715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNN 774
            L  L +++N  +G IPS +    +L  L +SEN  +G IP  +  L  L+  L+L+KNN
Sbjct: 725 KLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLE-FLNLAKNN 783

Query: 775 FSGEIP 780
             GE+P
Sbjct: 784 LRGEVP 789

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	970
255540609	976	serine-threonine protein kinase, plant-t	0.991	0.985	0.722	0.0
224119488	975	predicted protein [Populus trichocarpa]	0.994	0.989	0.716	0.0
356513621	962	PREDICTED: LRR receptor-like serine/thre	0.980	0.988	0.688	0.0
225456971	974	PREDICTED: LRR receptor-like serine/thre	0.993	0.989	0.710	0.0
356564990	938	PREDICTED: LRR receptor-like serine/thre	0.958	0.991	0.695	0.0
356507267	964	PREDICTED: LRR receptor-like serine/thre	0.983	0.989	0.676	0.0
449487851	944	PREDICTED: LOW QUALITY PROTEIN: LRR rece	0.962	0.989	0.660	0.0
449469707	949	PREDICTED: LRR receptor-like serine/thre	0.950	0.971	0.666	0.0
297733752	903	unnamed protein product [Vitis vinifera]	0.920	0.988	0.666	0.0
147803521	913	hypothetical protein VITISV_007982 [Viti	0.834	0.886	0.665	0.0

>gi|255540609|ref|XP_002511369.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223550484|gb|EEF51971.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 1347 bits (3486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/978 (72%), Positives = 818/978 (83%), Gaps = 16/978 (1%)

Query: 1   MGSIQMSHIMLFFVTL-------AVALGGISTDSFWLLRIKQELVDPTGILENWSARAHM 53
           MGSIQMSH+MLF   +       AV  G  STD +WLLRIK ELVDP G+LE+WS+ AH+
Sbjct: 1   MGSIQMSHLMLFLAIVFPVLGVSAVIGGDNSTDLYWLLRIKSELVDPLGVLESWSSGAHV 60

Query: 54  CSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQL 113
           C+W+ VTCS DQ HVVGLNLSSSGLSGSIS +  +L+SL TLDLSSN LTGLIP ELG+L
Sbjct: 61  CTWNRVTCSLDQTHVVGLNLSSSGLSGSISHELSHLSSLVTLDLSSNFLTGLIPPELGKL 120

Query: 114 QNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQ 173
            NLRILLLYSN  SG+IP ++  L KLQVLR+GDN+L+GEI P IGNLTELR LA+A+CQ
Sbjct: 121 HNLRILLLYSNYISGRIPEDLYSLKKLQVLRLGDNMLFGEITPSIGNLTELRVLAVAFCQ 180

Query: 174 LNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLL 233
            NGSIPV+IGNLKHL SLDLQ N L+GL+PE IHGCEELQ F+ASNN LEG IP+SI  L
Sbjct: 181 FNGSIPVQIGNLKHLLSLDLQKNSLTGLVPEEIHGCEELQYFSASNNRLEGDIPASIGKL 240

Query: 234 KSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN 293
           ++LQILNLANNSLSGSIPVEL  L +L+YLNLLGN   G+IP ELN+L QLE+LDLS NN
Sbjct: 241 RALQILNLANNSLSGSIPVELGQLSSLKYLNLLGNKLSGQIPLELNQLVQLEKLDLSVNN 300

Query: 294 LSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLR 353
           LSG ISL NTQLKNLETLVLS N FTGSIP  FC  NS+LQQL L +N +SG+FPL LL 
Sbjct: 301 LSGPISLFNTQLKNLETLVLSYNEFTGSIPSNFCFRNSNLQQLFLNQNNMSGKFPLGLLN 360

Query: 354 CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN 413
           CSSLQQLDLSDN+F+G+LP  +DKLE LTDL LNNNSF G  PPEIGN+S L  L+LFDN
Sbjct: 361 CSSLQQLDLSDNNFEGKLPSGIDKLENLTDLKLNNNSFRGKLPPEIGNMSNLVTLYLFDN 420

Query: 414 MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGK 473
           +I GK+P EIGKLQ LS IYLYDNQ SG+IPRELTNC+ LTE+DFFGNHF+GSIP T+GK
Sbjct: 421 IIMGKLPPEIGKLQRLSTIYLYDNQFSGAIPRELTNCTSLTEVDFFGNHFTGSIPPTIGK 480

Query: 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNN 533
           LKNL+ILQLRQNDLSGPIP SLGYC+RLQ IALADNK SG++P TFRFLSELY +TLYNN
Sbjct: 481 LKNLIILQLRQNDLSGPIPPSLGYCRRLQIIALADNKFSGTLPPTFRFLSELYKVTLYNN 540

Query: 534 SFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS 593
           SF+GPLPPSL  LK L+IINFSHN+FSGSI PL GSNSLTALDLTNNSFSGPIP+ LAMS
Sbjct: 541 SFEGPLPPSLSLLKNLQIINFSHNRFSGSISPLLGSNSLTALDLTNNSFSGPIPARLAMS 600

Query: 594 RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNE 653
           RNLSRLRLA+NHLTGNI SEFGKLTEL FLDLSFN+ TG + PQLS C KL H LL NN+
Sbjct: 601 RNLSRLRLAYNHLTGNISSEFGKLTELRFLDLSFNNLTGDVVPQLSNCRKLEHFLLGNNQ 660

Query: 654 LTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL 713
           LTG +P WLGSL+E+GELD SSNNF+G +PA++GNCSKLLKLSL  NNLSG+IP EIGNL
Sbjct: 661 LTGIMPSWLGSLEELGELDFSSNNFHGEIPAQLGNCSKLLKLSLHSNNLSGRIPEEIGNL 720

Query: 714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKN 773
           T+LNVLNLQ N+LSG+IP TIQ+C+KL+ELRLSENF TGSIP ++GRLTELQVILDLSKN
Sbjct: 721 TSLNVLNLQGNNLSGSIPGTIQECRKLFELRLSENFLTGSIPPEVGRLTELQVILDLSKN 780

Query: 774 NFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSG 833
           + SGEIP SLG+L+KLERLN+S+N  +G++P SL KLTSLH+LNLSNN LQGQLP TFSG
Sbjct: 781 SLSGEIPSSLGNLMKLERLNLSFNHFRGEIPFSLAKLTSLHMLNLSNNDLQGQLPSTFSG 840

Query: 834 FPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLR 893
           FPLSSF+GN KLCGPPL SCSE  GQ+ K LS+TAVV II AI+FTS +ICL+MLY+M+R
Sbjct: 841 FPLSSFVGNGKLCGPPLESCSESRGQERKSLSSTAVVGIIVAIVFTSTLICLVMLYMMVR 900

Query: 894 IWLNW-RQVSISNSDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRVT----VPSQSQGE 948
           IW NW R+VSIS+ DNG  G  +Q+REEEK VY+++ KRRNGE+W+V     V SQ +  
Sbjct: 901 IWCNWRRRVSISSLDNG--GGIEQRREEEKWVYKEE-KRRNGEYWKVNSMAMVTSQDKEI 957

Query: 949 VQNHILHFKMDSKAMNNT 966
            +  I H K D++++ NT
Sbjct: 958 SRTCIFHLK-DTESVRNT 974

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119488|ref|XP_002318086.1| predicted protein [Populus trichocarpa] gi|222858759|gb|EEE96306.1| predicted protein [Populus trichocarpa]

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 701/978 (71%), Positives = 805/978 (82%), Gaps = 13/978 (1%)

Query: 1   MGSIQMSHIMLFFVTLAVALG-----GISTDSFWLLRIKQELVDPTGILENWSARAHMCS 55
           MGS QM +++LF   L   L        S +S+WLLRIK ELVDP G+L+NWS RAHMCS
Sbjct: 1   MGSAQMCNLVLFLAILHAVLAVSPGEDNSAESYWLLRIKSELVDPVGVLDNWSPRAHMCS 60

Query: 56  WHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQN 115
           W+G+TCS DQ HV+G+NLS SGLSGSIS +  +LTSL+ LDLSSNSLTG IPSELG+LQN
Sbjct: 61  WNGLTCSLDQTHVLGMNLSGSGLSGSISHELWHLTSLQILDLSSNSLTGSIPSELGKLQN 120

Query: 116 LRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLN 175
           L++LLLY+NS SGKIP EIG L  LQVLR+GDNLL GEI P IGNLT+LR L +AYCQ N
Sbjct: 121 LQMLLLYANSLSGKIPEEIGLLKNLQVLRVGDNLLSGEITPSIGNLTQLRVLGLAYCQFN 180

Query: 176 GSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKS 235
           GSIP  IGNLKHL SLDLQ N L G IPE IHGCEELQ  AA NN LEG IP+SI +L+S
Sbjct: 181 GSIPSGIGNLKHLVSLDLQKNSLDGHIPEEIHGCEELQNLAALNNKLEGDIPASIGMLRS 240

Query: 236 LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLS 295
           LQILNLANNSLSGSIPVEL  L NL YL+LLGN   G IPS+LN+L QLE LDLS NN S
Sbjct: 241 LQILNLANNSLSGSIPVELGQLSNLTYLSLLGNRLSGRIPSQLNQLVQLETLDLSVNNFS 300

Query: 296 GSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS-LQQLILARNKLSGEFPLELLRC 354
           G+ISL N QLKNL TLVLS+N  TGSIP  FCL+NSS LQQL LARN LSG+F L+LL C
Sbjct: 301 GAISLFNAQLKNLRTLVLSNNDLTGSIPSNFCLSNSSKLQQLFLARNSLSGKFQLDLLNC 360

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNM 414
            SLQQLDLSDN+F+G LP  L+KLE LTDLLLNNNSF+G+ P EIGN+S LE L LFDNM
Sbjct: 361 RSLQQLDLSDNNFEGGLPSGLEKLEHLTDLLLNNNSFSGNLPSEIGNMSNLETLILFDNM 420

Query: 415 ITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKL 474
           ITG++P EIGKLQ LS IYLYDNQMSG IPRELTNC+ +T+IDFFGNHF+GSIP T+GKL
Sbjct: 421 ITGRLPSEIGKLQRLSTIYLYDNQMSGGIPRELTNCTSMTKIDFFGNHFTGSIPATIGKL 480

Query: 475 KNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNS 534
           KNL +LQLRQNDLSGPIP SLGYCKRLQ +ALADNK+SG++P TFRFL+EL  ITLYNNS
Sbjct: 481 KNLNMLQLRQNDLSGPIPPSLGYCKRLQIMALADNKISGTLPETFRFLTELNKITLYNNS 540

Query: 535 FKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSR 594
           F+GPLP SLF LK L+IINFSHN+FSGSI PL GSNSLTALDLTNNSFSGPIPSEL  SR
Sbjct: 541 FEGPLPASLFLLKNLKIINFSHNRFSGSISPLLGSNSLTALDLTNNSFSGPIPSELTQSR 600

Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
           NLSRLRLAHNHL+G IPSEFG LT+LNF DLSFN+ TG++ PQLS C K+ H LL+NN+L
Sbjct: 601 NLSRLRLAHNHLSGEIPSEFGSLTKLNFFDLSFNNLTGEVPPQLSNCKKIQHFLLNNNQL 660

Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT 714
            GT+P WLGSL+E+GELD S NNF+G +PAE+GNCS LLKLSL  N LSG IP EIGNLT
Sbjct: 661 AGTMPPWLGSLEELGELDFSFNNFHGNIPAELGNCSGLLKLSLHSNKLSGNIPQEIGNLT 720

Query: 715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNN 774
           +LNVLNLQRN+LSG IPSTIQ+C+K++ELRLSENF TGSIP +LG+LTELQVILDLS+N+
Sbjct: 721 SLNVLNLQRNNLSGLIPSTIQECEKIFELRLSENFLTGSIPPELGKLTELQVILDLSENS 780

Query: 775 FSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGF 834
           FSGEIP SLG+L+KLE LN+S N LQG+VP SL KLTSLH+LNLSNN LQGQLP TFSGF
Sbjct: 781 FSGEIPSSLGNLMKLEGLNLSLNHLQGEVPFSLTKLTSLHMLNLSNNDLQGQLPSTFSGF 840

Query: 835 PLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRI 894
           PLSSFLGN KLCGPPL+SC E +GQ+ + LSNTAVV II AI+FTS++ICL+MLY+++RI
Sbjct: 841 PLSSFLGNDKLCGPPLVSCLESAGQEKRGLSNTAVVGIIVAIVFTSSLICLVMLYMIVRI 900

Query: 895 WLNWRQVSISNSDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRVT----VPSQSQGEVQ 950
           W NWRQV+IS+ D    G  +Q+REEEK  Y D  KRRNGE+W+V     VPSQ +   +
Sbjct: 901 WCNWRQVTISSMD---AGGTEQRREEEKSEYGDKEKRRNGEYWKVNSMALVPSQDKQSPR 957

Query: 951 NHILHFKMDSKAMNNTRV 968
             I HFKMD++   NT V
Sbjct: 958 TCIFHFKMDTEITGNTLV 975

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513621|ref|XP_003525510.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]

 Score = 1285 bits (3325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/979 (68%), Positives = 774/979 (79%), Gaps = 28/979 (2%)

Query: 1   MGSIQMSHIMLFF----VTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSW 56
           MGSI M H  L       T        +TDS+WL RIK ELVDP G L NWS+   +C+W
Sbjct: 1   MGSIWMCHFFLLLSILGTTFIATTANNATDSYWLHRIKSELVDPFGALSNWSSTTQVCNW 60

Query: 57  HGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNL 116
           +G+TC+ DQ+H++GLNLS SG+SGSIS +  + TSL TLDLSSNSL+G IPSELGQLQNL
Sbjct: 61  NGITCAVDQEHIIGLNLSGSGISGSISAELSHFTSLRTLDLSSNSLSGSIPSELGQLQNL 120

Query: 117 RILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNG 176
           RIL L+SN  SG IP EIG L KLQVLRIGDN+L GEIPP + N++EL  L + YC LNG
Sbjct: 121 RILQLHSNDLSGNIPSEIGNLRKLQVLRIGDNMLTGEIPPSVANMSELTVLTLGYCHLNG 180

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
           SIP  IG LKHL SLDLQMN LSG IPE I GCEELQ FAASNNMLEG +PSS+  LKSL
Sbjct: 181 SIPFGIGKLKHLISLDLQMNSLSGPIPEEIQGCEELQNFAASNNMLEGDLPSSMGSLKSL 240

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296
           +ILNL NNSLSGSIP  LSHL NL YLNLLGN   GEIPSELN L QL++LDLSKNNLSG
Sbjct: 241 KILNLVNNSLSGSIPTALSHLSNLTYLNLLGNKLHGEIPSELNSLIQLQKLDLSKNNLSG 300

Query: 297 SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
           SI LLN +L++LETLVLSDNA TGSIP  FCL  S LQQL LARN LSG+FPLELL CSS
Sbjct: 301 SIPLLNVKLQSLETLVLSDNALTGSIPSNFCLRGSKLQQLFLARNMLSGKFPLELLNCSS 360

Query: 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMIT 416
           +QQLDLSDNSF+GELP SLDKL+ LTDL+LNNNSF GS PPEIGN+S LE+LFLF N   
Sbjct: 361 IQQLDLSDNSFEGELPSSLDKLQNLTDLVLNNNSFVGSLPPEIGNISSLESLFLFGNFFK 420

Query: 417 GKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKN 476
           GKIP+EIG+LQ LS+IYLYDNQ+SG IPRELTNC+ L E+DFFGNHF+G IPET+GKLK 
Sbjct: 421 GKIPLEIGRLQRLSSIYLYDNQISGPIPRELTNCTSLKEVDFFGNHFTGPIPETIGKLKG 480

Query: 477 LVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK 536
           LV+L LRQNDLSGPIP S+GYCK LQ +ALADN LSGS+P TF +LSEL  ITLYNNSF+
Sbjct: 481 LVVLHLRQNDLSGPIPPSMGYCKSLQILALADNMLSGSIPPTFSYLSELTKITLYNNSFE 540

Query: 537 GPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNL 596
           GP+P SL  LK L+IINFSHNKFSGS +PLTGSNSLT LDLTNNSFSGPIPS L  SRNL
Sbjct: 541 GPIPHSLSSLKSLKIINFSHNKFSGSFFPLTGSNSLTLLDLTNNSFSGPIPSTLTNSRNL 600

Query: 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG 656
           SRLRL  N+LTG+IPSEFG LT LNFLDLSFN+ TG++ PQLS   K+ H+L++NN L+G
Sbjct: 601 SRLRLGENYLTGSIPSEFGHLTVLNFLDLSFNNLTGEVPPQLSNSKKMEHMLMNNNGLSG 660

Query: 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716
            IP WLGSLQE+GELDLS NNF G +P+E+GNCSKLLKLSL  NNLSG+IP EIGNLT+L
Sbjct: 661 KIPDWLGSLQELGELDLSYNNFRGKIPSELGNCSKLLKLSLHHNNLSGEIPQEIGNLTSL 720

Query: 717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS 776
           NVLNLQRNS SG IP TIQ+C KLYELRLSEN  TG+IP +LG L ELQVILDLSKN F+
Sbjct: 721 NVLNLQRNSFSGIIPPTIQRCTKLYELRLSENLLTGAIPVELGGLAELQVILDLSKNLFT 780

Query: 777 GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPL 836
           GEIPPSLG+L+KLERLN+S+NQL+G+VP SLG+LTSLHVLNLSNNHL+GQ+P  FSGFPL
Sbjct: 781 GEIPPSLGNLMKLERLNLSFNQLEGKVPPSLGRLTSLHVLNLSNNHLEGQIPSIFSGFPL 840

Query: 837 SSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWL 896
           SSFL N  LCGPPL SCSE + Q   +LSNT V VII AI+FTS VICL+MLYIMLRIW 
Sbjct: 841 SSFLNNNGLCGPPLSSCSESTAQGKMQLSNTQVAVIIVAIVFTSTVICLVMLYIMLRIWC 900

Query: 897 NWRQVSISNSDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRVT----VPS---QSQGEV 949
           NWR+V+IS+++ G   +               HK RNGE+W +     +PS   Q+    
Sbjct: 901 NWRKVAISSAEGGGTVA---------------HKTRNGEYWNMNSFGFIPSPDKQNSAAT 945

Query: 950 QNHILHFKMDSKAMNNTRV 968
                + KM++  M NT +
Sbjct: 946 TTSFYNLKMET--MENTSM 962

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456971|ref|XP_002278672.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera]

 Score = 1275 bits (3300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 695/978 (71%), Positives = 801/978 (81%), Gaps = 14/978 (1%)

Query: 1   MGSIQMSHIMLFFVTL----AVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSW 56
           MGSI+M H+MLFF  L    AV  G  STDS+WLLRIK ELVDP G+L NWS+R ++CSW
Sbjct: 1   MGSIKMCHMMLFFAVLSAVLAVTFGDNSTDSYWLLRIKSELVDPVGVLANWSSRTNICSW 60

Query: 57  HGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNL 116
           +G+ CSDDQ H++GL+LS SGLSGSIS +F +LTSL+TLDLS N+  G IP ELG LQNL
Sbjct: 61  NGLVCSDDQLHIIGLSLSGSGLSGSISPEFSHLTSLQTLDLSLNAFAGSIPHELGLLQNL 120

Query: 117 RILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNG 176
           R LLLYSN  SGKIP EI  L KLQVLRIGDN+L GEI P IGNL ELR L +AYCQLNG
Sbjct: 121 RELLLYSNYLSGKIPTEICLLKKLQVLRIGDNMLAGEITPSIGNLKELRVLGLAYCQLNG 180

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
           SIP EIGNLK+L  LDLQ N LS +IPE I GC ELQ FAASNN LEG IP+S+  LKSL
Sbjct: 181 SIPAEIGNLKNLKFLDLQKNSLSSVIPEEIQGCVELQNFAASNNKLEGEIPASMGNLKSL 240

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296
           QILNLANNSLSGSIP+EL  L NL+YLNLLGN   G IPSELN+L QL++LDLS NNLSG
Sbjct: 241 QILNLANNSLSGSIPIELGGLSNLKYLNLLGNRLSGMIPSELNQLDQLQKLDLSSNNLSG 300

Query: 297 SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
           +I+ LNTQLK+LE L LSDN  T SIP  FC ++SSL+Q+ LA+NKLSG FPLELL CSS
Sbjct: 301 TINFLNTQLKSLEVLALSDNLLTDSIPGNFCTSSSSLRQIFLAQNKLSGTFPLELLNCSS 360

Query: 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMIT 416
           +QQLDLSDN F+G LP  L+KLE LTDLLLNNNSF+G  PPEIGN+S LE L+LFDNMIT
Sbjct: 361 IQQLDLSDNRFEGVLPPELEKLENLTDLLLNNNSFSGKLPPEIGNMSSLETLYLFDNMIT 420

Query: 417 GKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKN 476
           G IPVE+GKLQ LS+IYLYDNQ+SGSIPRELTNCS L+EIDFFGNHF GSIP T+GKL+N
Sbjct: 421 GNIPVELGKLQKLSSIYLYDNQLSGSIPRELTNCSSLSEIDFFGNHFMGSIPATIGKLRN 480

Query: 477 LVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK 536
           LV LQLRQNDLSGPIP SLGYCK+L  + LADNKLSGS+P TFRFLSEL+L +LYNNSF+
Sbjct: 481 LVFLQLRQNDLSGPIPPSLGYCKKLHTLTLADNKLSGSLPPTFRFLSELHLFSLYNNSFE 540

Query: 537 GPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNL 596
           GPLP SLF LKKL IINFSHN+FSGSI PL GS+ LT LDLTNNSFSGPIPS LAMS+NL
Sbjct: 541 GPLPESLFLLKKLGIINFSHNRFSGSILPLLGSDFLTLLDLTNNSFSGPIPSRLAMSKNL 600

Query: 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG 656
           +RLRLAHN LTGNI SEFG+L EL FLDLSFN+FTG++AP+LS C KL H+LL+NN+  G
Sbjct: 601 TRLRLAHNLLTGNISSEFGQLKELKFLDLSFNNFTGEVAPELSNCKKLEHVLLNNNQFIG 660

Query: 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716
            IP WLG LQ++GELDLS N F+GTVPA +GNCS LLKLSL  N+LSG+IPPE+GNLT+L
Sbjct: 661 MIPSWLGGLQKLGELDLSFNFFHGTVPAALGNCSILLKLSLNDNSLSGEIPPEMGNLTSL 720

Query: 717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS 776
           NVL+LQRN+LSG IPST QQCKKLYELRLSEN  TGSIP++LG LTELQVILDLS+N FS
Sbjct: 721 NVLDLQRNNLSGQIPSTFQQCKKLYELRLSENMLTGSIPSELGTLTELQVILDLSRNLFS 780

Query: 777 GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPL 836
           GEIP SLG+L+KLE LNIS+NQLQG+VP+SLGKLTSLH+L+LSNNHL+GQLP TFS FPL
Sbjct: 781 GEIPSSLGNLMKLESLNISFNQLQGEVPSSLGKLTSLHLLDLSNNHLRGQLPSTFSEFPL 840

Query: 837 SSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWL 896
           SSF+ N KLCGPPL SCSE +GQ+ +RLSNTAV  II AI+FTS +ICL++LYIM+RIW 
Sbjct: 841 SSFMLNDKLCGPPLESCSEYAGQEKRRLSNTAVAGIIVAIVFTSTLICLVLLYIMVRIWC 900

Query: 897 NWRQVSISNSDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRVT----VPSQSQGEVQNH 952
            WR+V I +SD G     +   EEEK  Y D+ KR+ GE+W+V     VPSQ +  + + 
Sbjct: 901 TWRKVMILSSDGGGT---EHNIEEEKWDYGDEKKRK-GEYWKVNTMALVPSQEKQNLSSP 956

Query: 953 --ILHFKMDSKAMNNTRV 968
             I   KMDS+ M  T V
Sbjct: 957 TCIFQLKMDSETMETTMV 974

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564990|ref|XP_003550728.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]

 Score = 1269 bits (3284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/949 (69%), Positives = 762/949 (80%), Gaps = 19/949 (2%)

Query: 24  STDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSIS 83
           +TDS+ LL++K ELVDP G   NW      C+W+G+TC+ DQ+HV+GLNLS SG+SGSIS
Sbjct: 5   ATDSYLLLKVKSELVDPLGAFSNWFPTTQFCNWNGITCAVDQEHVIGLNLSGSGISGSIS 64

Query: 84  RDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVL 143
            +  N TSL+TLDLSSNSL+G IPSELGQLQNLRIL LYSN  SG IP EIG L KLQVL
Sbjct: 65  VELGNFTSLQTLDLSSNSLSGSIPSELGQLQNLRILQLYSNDLSGNIPSEIGNLRKLQVL 124

Query: 144 RIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIP 203
           RIGDN+L GEIPP + N++EL+ LA+ YC LNGSIP  IG LKHL SLD+QMN ++G IP
Sbjct: 125 RIGDNMLTGEIPPSVANMSELKVLALGYCHLNGSIPFGIGKLKHLISLDVQMNSINGHIP 184

Query: 204 EAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYL 263
           E I GCEELQ FAASNNMLEG +PSS+  LKSL+ILNLANNSLSGSIP  LSHL NL YL
Sbjct: 185 EEIEGCEELQNFAASNNMLEGDLPSSMGSLKSLKILNLANNSLSGSIPTALSHLSNLTYL 244

Query: 264 NLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIP 323
           NLLGN   GEIPSELN L Q+++LDLSKNNLSGSI LLN +L++LETLVLSDNA TGSIP
Sbjct: 245 NLLGNKLHGEIPSELNSLIQMQKLDLSKNNLSGSIPLLNVKLQSLETLVLSDNALTGSIP 304

Query: 324 IKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTD 383
             FCL  S LQQL LARN LSG+FPLELL CSS+QQLDLSDNSF+G+LP  LDKL+ LTD
Sbjct: 305 SNFCLRGSKLQQLFLARNMLSGKFPLELLNCSSIQQLDLSDNSFEGKLPSILDKLQNLTD 364

Query: 384 LLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSI 443
           L+LNNNSF GS PPEIGN+S LENLFLF N   GKIP+EIG+LQ LS+IYLYDNQMSG I
Sbjct: 365 LVLNNNSFVGSLPPEIGNISSLENLFLFGNFFKGKIPLEIGRLQRLSSIYLYDNQMSGLI 424

Query: 444 PRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQ 503
           PRELTNC+ L EIDFFGNHF+G IPET+GKLK+LV+L LRQNDLSGPIP S+GYCK LQ 
Sbjct: 425 PRELTNCTSLKEIDFFGNHFTGPIPETIGKLKDLVVLHLRQNDLSGPIPPSMGYCKSLQI 484

Query: 504 IALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSI 563
           +ALADN LSGS+P TF +LSEL  ITLYNNSF+GP+P SL  LK L+IINFSHNKFSGS 
Sbjct: 485 LALADNMLSGSIPPTFSYLSELTKITLYNNSFEGPIPHSLSSLKSLKIINFSHNKFSGSF 544

Query: 564 YPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFL 623
           +PLT SNSLT LDLTNNSFSGPIPS LA SRNL RLRL  N+LTG IPSEFG+LTELNFL
Sbjct: 545 FPLTCSNSLTLLDLTNNSFSGPIPSTLANSRNLGRLRLGQNYLTGTIPSEFGQLTELNFL 604

Query: 624 DLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVP 683
           DLSFN+ TG++ PQLS   K+ H+L++NN L+G I  WLGSLQE+GELDLS NNF+G VP
Sbjct: 605 DLSFNNLTGEVPPQLSNSKKMEHILMNNNRLSGEISDWLGSLQELGELDLSYNNFSGKVP 664

Query: 684 AEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYEL 743
           +E+GNCSKLLKLSL  NNLSG+IP EIGNLT+LNVLNLQRN  SG IP TIQQC KLYEL
Sbjct: 665 SELGNCSKLLKLSLHHNNLSGEIPQEIGNLTSLNVLNLQRNGFSGLIPPTIQQCTKLYEL 724

Query: 744 RLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQV 803
           RLSEN  TG IP +LG L ELQVILDLSKN F+GEIPPSLG+L+KLERLN+S+NQL+G+V
Sbjct: 725 RLSENLLTGVIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLMKLERLNLSFNQLEGKV 784

Query: 804 PASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKR 863
           P+SLGKLTSLHVLNLSNNHL+G++P TFSGFPLS+FL N+ LCGPPL SCSE   Q   +
Sbjct: 785 PSSLGKLTSLHVLNLSNNHLEGKIPSTFSGFPLSTFLNNSGLCGPPLRSCSESMVQGKIQ 844

Query: 864 LSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISNSDNGNNGSDQQKREEEKL 923
           LSNT V +II AI+FTS VICL+MLYIMLRIW NWR+V+IS+++ G              
Sbjct: 845 LSNTQVAIIIVAIVFTSTVICLVMLYIMLRIWCNWRKVTISSAEGGGT------------ 892

Query: 924 VYEDDHKRRNGEFWRVT----VPSQSQGEVQNHILHFKMDSKAMNNTRV 968
                HK RNGE+W +     +PS  +         + +  + M NT +
Sbjct: 893 ---VGHKTRNGEYWNMNSFGFIPSPDKQNSATTTSFYNLKMETMENTNM 938

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507267|ref|XP_003522390.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]

 Score = 1239 bits (3207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/979 (67%), Positives = 775/979 (79%), Gaps = 25/979 (2%)

Query: 1   MGSIQMSHIMLFFV---TLAVA-LGGISTDSFWLLRIKQELVDPTGILENWS-ARAHMCS 55
           M SI + H +L      T+ VA LG  +T+S+WLLRIK ELVDP G L NWS     +CS
Sbjct: 1   MDSIYICHFILLLTIVCTVVVATLGDNTTESYWLLRIKSELVDPLGALRNWSPTTTQICS 60

Query: 56  WHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQN 115
           W+G+TC+ DQ  VVGLNLS SGLSGSIS +F +L SL++LDLSSNSLTG IPSELG+LQN
Sbjct: 61  WNGLTCALDQARVVGLNLSGSGLSGSISGEFSHLISLQSLDLSSNSLTGSIPSELGKLQN 120

Query: 116 LRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLN 175
           LR LLLYSN  SG IP EIG L+KLQVLR+GDN+L GEI P IGNL+EL    +A C LN
Sbjct: 121 LRTLLLYSNYLSGAIPKEIGNLSKLQVLRLGDNMLEGEITPSIGNLSELTVFGVANCNLN 180

Query: 176 GSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKS 235
           GSIPVE+G LK+L SLDLQ+N LSG IPE I GCE LQ FAASNNMLEG IPSS+  LKS
Sbjct: 181 GSIPVEVGKLKNLVSLDLQVNSLSGYIPEEIQGCEGLQNFAASNNMLEGEIPSSLGSLKS 240

Query: 236 LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLS 295
           L+ILNLANN+LSGSIP  LS L NL YLNLLGN+ +GEIPSELN L+QL++LDLS+N+LS
Sbjct: 241 LRILNLANNTLSGSIPTSLSLLSNLTYLNLLGNMLNGEIPSELNSLSQLQKLDLSRNSLS 300

Query: 296 GSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS 355
           G ++LLN +L+NLET+VLSDNA TGSIP  FCL  S LQQL LARNKLSG FPLELL CS
Sbjct: 301 GPLALLNVKLQNLETMVLSDNALTGSIPYNFCLRGSKLQQLFLARNKLSGRFPLELLNCS 360

Query: 356 SLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMI 415
           S+QQ+DLSDNSF+GELP SLDKL+ LTDL+LNNNSF+GS PP IGN+S L +LFLF N  
Sbjct: 361 SIQQVDLSDNSFEGELPSSLDKLQNLTDLVLNNNSFSGSLPPGIGNISSLRSLFLFGNFF 420

Query: 416 TGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLK 475
           TGK+PVEIG+L+ L+ IYLYDNQMSG IPRELTNC+ LTEIDFFGNHFSG IP+T+GKLK
Sbjct: 421 TGKLPVEIGRLKRLNTIYLYDNQMSGPIPRELTNCTRLTEIDFFGNHFSGPIPKTIGKLK 480

Query: 476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
           +L IL LRQNDLSGPIP S+GYCKRLQ +ALADNKLSGS+P TF +LS++  ITLYNNSF
Sbjct: 481 DLTILHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQIRTITLYNNSF 540

Query: 536 KGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN 595
           +GPLP SL  L+ L+IINFS+NKFSGSI+PLTGSNSLT LDLTNNSFSG IPS L  SR+
Sbjct: 541 EGPLPDSLSLLRNLKIINFSNNKFSGSIFPLTGSNSLTVLDLTNNSFSGSIPSILGNSRD 600

Query: 596 LSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT 655
           L+RLRL +N+LTG IPSE G LTELNFLDLSFN+ TG + PQLS C K+ HLLL+NN L+
Sbjct: 601 LTRLRLGNNYLTGTIPSELGHLTELNFLDLSFNNLTGHVLPQLSNCKKIEHLLLNNNRLS 660

Query: 656 GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTA 715
           G +  WLGSLQE+GELDLS NNF+G VP E+G CSKLLKL L  NNLSG+IP EIGNLT+
Sbjct: 661 GEMSPWLGSLQELGELDLSFNNFHGRVPPELGGCSKLLKLFLHHNNLSGEIPQEIGNLTS 720

Query: 716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNF 775
           LNV NLQ+N LSG IPSTIQQC KLYE+RLSENF +G+IPA+LG +TELQVILDLS+N+F
Sbjct: 721 LNVFNLQKNGLSGLIPSTIQQCTKLYEIRLSENFLSGTIPAELGGVTELQVILDLSRNHF 780

Query: 776 SGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
           SGEIP SLG+L+KLERL++S+N LQGQVP SLG+LTSLH+LNLS NHL G +P TFSGFP
Sbjct: 781 SGEIPSSLGNLMKLERLDLSFNHLQGQVPPSLGQLTSLHMLNLSYNHLNGLIPSTFSGFP 840

Query: 836 LSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIW 895
           LSSFL N  LCGPPL  C E +G++  +LSN  V  II AI+ TS +ICL+MLYIMLRIW
Sbjct: 841 LSSFLNNDHLCGPPLTLCLEATGKERMQLSNAQVAAIIVAIVLTSTLICLVMLYIMLRIW 900

Query: 896 LNWRQVSISNSDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRVTVPS-----QSQGEVQ 950
            NW +V++S+ D G                 +  K RNGE+W +  P        Q    
Sbjct: 901 CNWIKVAVSSEDGG---------------MVEQQKTRNGEYWNMNSPELFPSPDKQISPT 945

Query: 951 NHILHFKMDSKAMNNTRVR 969
             I   K+D++A  NT VR
Sbjct: 946 ICICSLKIDAEAQENTLVR 964

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487851|ref|XP_004157832.1| PREDICTED: LOW QUALITY PROTEIN: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cucumis sativus]

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/941 (66%), Positives = 740/941 (78%), Gaps = 7/941 (0%)

Query: 2   GSIQMSHIMLFF---VTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHG 58
           G+  +  I+ FF   V LA+A G   T+S WLL+IK ELVDP G+LENWS   H+CSWHG
Sbjct: 3   GTYTLRFILFFFILSVLLAMARGQAPTNSDWLLKIKSELVDPVGVLENWSPSVHVCSWHG 62

Query: 59  VTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRI 118
           ++CS+D+  +V LNLS S LSGS+  +  ++TSLE LDLSSNSL+G IPSELGQL NLR+
Sbjct: 63  ISCSNDETQIVSLNLSQSRLSGSMWSELWHVTSLEVLDLSSNSLSGSIPSELGQLYNLRV 122

Query: 119 LLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSI 178
           L+L+SN  SGK+P EIG L  LQ LRIG+NLL GEI P IGNLT L  L + YC+ NGSI
Sbjct: 123 LILHSNFLSGKLPAEIGLLKNLQALRIGNNLLSGEITPFIGNLTNLTVLGLGYCEFNGSI 182

Query: 179 PVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQI 238
           PVEIGNLKHL SL+LQ N+LSG IP+ I G EEL+   ASNNM +G IP S+  +KSL++
Sbjct: 183 PVEIGNLKHLISLNLQQNRLSGSIPDTIRGNEELEDLLASNNMFDGNIPDSLGSIKSLRV 242

Query: 239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
           LNLANNSLSGSIPV  S L NL YLNLLGN   GEIP E+N+L  LEE+DLS+NNLSG+I
Sbjct: 243 LNLANNSLSGSIPVAFSGLSNLVYLNLLGNRLSGEIPPEINQLVLLEEVDLSRNNLSGTI 302

Query: 299 SLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQ 358
           SLLNTQL+NL TLVLSDNA TG+IP  FC   S+LQQL LARNKLSG+FP ELL CSSLQ
Sbjct: 303 SLLNTQLQNLTTLVLSDNALTGNIPNSFCFRTSNLQQLFLARNKLSGKFPQELLNCSSLQ 362

Query: 359 QLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGK 418
           QLDLS N  +G+LP  LD LE LT LLLNNNSFTG  PP+IGN+S LE+L+LFDN +TG 
Sbjct: 363 QLDLSGNRLEGDLPSGLDDLEHLTVLLLNNNSFTGFIPPQIGNMSNLEDLYLFDNKLTGT 422

Query: 419 IPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLV 478
           IP EIGKL+ LS I+LYDNQM+GSIP ELTNCS L EIDFFGNHF G IPE +G LKNL+
Sbjct: 423 IPKEIGKLKKLSFIFLYDNQMTGSIPNELTNCSNLMEIDFFGNHFIGPIPENIGSLKNLI 482

Query: 479 ILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGP 538
           +L LRQN L GPIPASLGYCK LQ +ALADN LSGS+P T   LSEL  ITLYNNS +GP
Sbjct: 483 VLHLRQNFLWGPIPASLGYCKSLQLLALADNNLSGSLPSTLGLLSELSTITLYNNSLEGP 542

Query: 539 LPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSR 598
           LP S F LK+L+IINFS+NKF+G+I+PL G NSLTALDLTNNSFSG IPS L  SRNL R
Sbjct: 543 LPVSFFILKRLKIINFSNNKFNGTIFPLCGLNSLTALDLTNNSFSGHIPSRLINSRNLRR 602

Query: 599 LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI 658
           LRLAHN LTG IPSEFG+L ELNFLDLS N+ TG+++PQL  C KL H LL++N LTGTI
Sbjct: 603 LRLAHNRLTGYIPSEFGQLKELNFLDLSHNNLTGEMSPQLFNCTKLEHFLLNDNRLTGTI 662

Query: 659 PFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNV 718
              +G+LQ +GELD SSNN  G +PAEIG+CSKLLKLSL  NNLSG IP EIGN T LNV
Sbjct: 663 TPLIGNLQAVGELDFSSNNLYGRIPAEIGSCSKLLKLSLHNNNLSGMIPLEIGNFTFLNV 722

Query: 719 LNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGE 778
           LNL+RN+LSG+IPSTI++C KLYEL+LSENF TG IP +LG L++LQV LDLSKN  SG+
Sbjct: 723 LNLERNNLSGSIPSTIEKCSKLYELKLSENFLTGEIPQELGELSDLQVALDLSKNLISGK 782

Query: 779 IPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSS 838
           IP S+G+L+KLERL++S N L G++P SL +LTS+H+LNLS+N LQG +P  FS FPL+S
Sbjct: 783 IPSSIGNLMKLERLDLSSNHLIGEIPTSLEQLTSIHILNLSDNQLQGSIPQLFSDFPLTS 842

Query: 839 FLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNW 898
           F GN +LCG PL +CS+ + Q+  RLS  AV+ II AI FTS VICLIMLYIMLRIW NW
Sbjct: 843 FKGNDELCGRPLSTCSKSASQETSRLSKAAVIGIIVAIXFTSMVICLIMLYIMLRIWCNW 902

Query: 899 RQVSISNSDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRV 939
           R+VS+ +S +G+   ++  REE K VY +D  +  G++W+V
Sbjct: 903 RKVSVISSSDGS--GNEHGREEVKWVYRND--KNVGQYWKV 939

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469707|ref|XP_004152560.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cucumis sativus]

 Score = 1190 bits (3078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/926 (66%), Positives = 732/926 (79%), Gaps = 4/926 (0%)

Query: 14  VTLAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNL 73
           V LA+A G   T+S WLL+IK ELVDP G+LENWS   H+CSWHG++CS+D+  +V LNL
Sbjct: 23  VLLAMARGQAPTNSDWLLKIKSELVDPVGVLENWSPSVHVCSWHGISCSNDETQIVSLNL 82

Query: 74  SSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPE 133
           S S LSGS+  +  ++TSLE LDLSSNSL+G IPSELGQL NLR+L+L+SN  SGK+P E
Sbjct: 83  SQSRLSGSMWSELWHVTSLEVLDLSSNSLSGSIPSELGQLYNLRVLILHSNFLSGKLPAE 142

Query: 134 IGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDL 193
           IG L  LQ LRIG+NLL GEI P IGNLT L  L + YC+ NGSIPVEIGNLKHL SL+L
Sbjct: 143 IGLLKNLQALRIGNNLLSGEITPFIGNLTNLTVLGLGYCEFNGSIPVEIGNLKHLISLNL 202

Query: 194 QMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE 253
           Q N+LSG IP+ I G EEL+   ASNNM +G IP S+  +KSL++LNLANNSLSGSIPV 
Sbjct: 203 QQNRLSGSIPDTIRGNEELEDLLASNNMFDGNIPDSLGSIKSLRVLNLANNSLSGSIPVA 262

Query: 254 LSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVL 313
            S L NL YLNLLGN   GEIP E+N+L  LEE+DLS+NNLSG+ISLLN QL+NL TLVL
Sbjct: 263 FSGLSNLVYLNLLGNRLSGEIPPEINQLVLLEEVDLSRNNLSGTISLLNAQLQNLTTLVL 322

Query: 314 SDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPR 373
           SDNA TG+IP  FC   S+LQQL LARNKLSG+FP ELL CSSLQQLDLS N  +G+LP 
Sbjct: 323 SDNALTGNIPNSFCFRTSNLQQLFLARNKLSGKFPQELLNCSSLQQLDLSGNRLEGDLPP 382

Query: 374 SLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIY 433
            LD LE LT LLLNNNSFTG  PP+IGN+S LE+L+LFDN +TG IP EIGKL+ LS I+
Sbjct: 383 GLDDLEHLTVLLLNNNSFTGFIPPQIGNMSNLEDLYLFDNKLTGTIPKEIGKLKKLSFIF 442

Query: 434 LYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA 493
           LYDNQM+GSIP ELTNCS L EIDFFGNHF G IPE +G LKNL++L LRQN L GPIPA
Sbjct: 443 LYDNQMTGSIPNELTNCSNLMEIDFFGNHFIGPIPENIGSLKNLIVLHLRQNFLWGPIPA 502

Query: 494 SLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIIN 553
           SLGYCK LQ +ALADN LSGS+P T   LSEL  ITLYNNS +GPLP S F LK+L+IIN
Sbjct: 503 SLGYCKSLQLLALADNNLSGSLPSTLGLLSELSTITLYNNSLEGPLPVSFFILKRLKIIN 562

Query: 554 FSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE 613
           FS+NKF+G+I PL G NSLTALDLTNNSFSG IPS L  SRNL RLRLAHN LTG IPSE
Sbjct: 563 FSNNKFNGTILPLCGLNSLTALDLTNNSFSGHIPSRLINSRNLRRLRLAHNRLTGYIPSE 622

Query: 614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL 673
           FG+L ELNFLDLS N+ TG+++PQL  C KL H LL++N LTGTI   +G+LQ +GELD 
Sbjct: 623 FGQLKELNFLDLSHNNLTGEMSPQLFNCTKLEHFLLNDNRLTGTITPLIGNLQAVGELDF 682

Query: 674 SSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPST 733
           SSNN  G +PAEIG+CSKLLKLSL  NNLSG IP EIGN T LNVLNL+RN+LSG+IPST
Sbjct: 683 SSNNLYGRIPAEIGSCSKLLKLSLHNNNLSGMIPLEIGNFTFLNVLNLERNNLSGSIPST 742

Query: 734 IQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN 793
           I++C KLYEL+LSENF TG IP +LG L++LQV LDLSKN  SG+IP S+G+L+KLERL+
Sbjct: 743 IEKCSKLYELKLSENFLTGEIPQELGELSDLQVALDLSKNLISGKIPSSIGNLMKLERLD 802

Query: 794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSC 853
           +S N L G++P SL +LTS+H+LNLS+N LQG +P  FS FPL+SF GN +LCG PL +C
Sbjct: 803 LSSNHLIGEIPTSLEQLTSIHILNLSDNQLQGSIPQLFSDFPLTSFKGNDELCGRPLSTC 862

Query: 854 SELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISNSDNGNNGS 913
           S+ + Q+  RLS  AV+ II AI+FTS VICLIMLYIMLRIW NWR+VS+ +S +G+   
Sbjct: 863 SKSASQETSRLSKAAVIGIIVAIVFTSMVICLIMLYIMLRIWCNWRKVSVISSSDGS--G 920

Query: 914 DQQKREEEKLVYEDDHKRRNGEFWRV 939
           ++  REE K VY +D  +  G++W+V
Sbjct: 921 NEHGREEVKWVYRND--KNVGQYWKV 944

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733752|emb|CBI14999.3| unnamed protein product [Vitis vinifera]

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/969 (66%), Positives = 743/969 (76%), Gaps = 76/969 (7%)

Query: 10  MLFFVTL----AVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQ 65
           MLFF  L    AV  G  STDS+WLLRIK ELVDP G+L NWS+R ++CSW+G+ CSDDQ
Sbjct: 1   MLFFAVLSAVLAVTFGDNSTDSYWLLRIKSELVDPVGVLANWSSRTNICSWNGLVCSDDQ 60

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
            H++GL+LS SGLSGSIS +F +LTSL+TLDLS N+  G IP ELG LQNLR LLLYSN 
Sbjct: 61  LHIIGLSLSGSGLSGSISPEFSHLTSLQTLDLSLNAFAGSIPHELGLLQNLRELLLYSNY 120

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            SGKIP EI  L KLQVLRIGDN+L GEI P IGNL ELR L +AYCQLNGSIP EIGNL
Sbjct: 121 LSGKIPTEICLLKKLQVLRIGDNMLAGEITPSIGNLKELRVLGLAYCQLNGSIPAEIGNL 180

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
           K+L  LDLQ N LS L                     EG IP+S+  LKSLQILNLANNS
Sbjct: 181 KNLKFLDLQKNSLSSL---------------------EGEIPASMGNLKSLQILNLANNS 219

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL 305
           LSGSIP+EL  L NL+YLNLLGN   G IPSELN+L QL++LDLS NNLSG+I+ LNTQL
Sbjct: 220 LSGSIPIELGGLSNLKYLNLLGNRLSGMIPSELNQLDQLQKLDLSSNNLSGTINFLNTQL 279

Query: 306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365
           K+LE L LSDN  T SIP  FC ++SSL+Q+ LA+NKLSG FPLELL CSS+QQLDLSDN
Sbjct: 280 KSLEVLALSDNLLTDSIPGNFCTSSSSLRQIFLAQNKLSGTFPLELLNCSSIQQLDLSDN 339

Query: 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK 425
            F+G LP  L+KLE LTDLLLNNNSF+G  PPEIGN+S LE L+LFDNMITG IPVE+GK
Sbjct: 340 RFEGVLPPELEKLENLTDLLLNNNSFSGKLPPEIGNMSSLETLYLFDNMITGNIPVELGK 399

Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
           LQ LS+IYLYDNQ+SGSIPRELTNCS L+EIDFFGNHF GSIP T+GKL+NLV LQLRQN
Sbjct: 400 LQKLSSIYLYDNQLSGSIPRELTNCSSLSEIDFFGNHFMGSIPATIGKLRNLVFLQLRQN 459

Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ 545
           DLSGPIP SLGYCK+L  + LADNKLSGS+P TFRFLSEL+L +LYNNSF+GPLP SLF 
Sbjct: 460 DLSGPIPPSLGYCKKLHTLTLADNKLSGSLPPTFRFLSELHLFSLYNNSFEGPLPESLFL 519

Query: 546 LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH 605
           LKKL IINFSHN+FSGSI PL GS+ LT LDLTNNSFSGPIPS LAMS+NL+RLRLAHN 
Sbjct: 520 LKKLGIINFSHNRFSGSILPLLGSDFLTLLDLTNNSFSGPIPSRLAMSKNLTRLRLAHNL 579

Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSL 665
           LTGNI SEFG+L EL FLDLSFN+FTG++AP+LS C KL H+LL+NN+  G IP WLG L
Sbjct: 580 LTGNISSEFGQLKELKFLDLSFNNFTGEVAPELSNCKKLEHVLLNNNQFIGMIPSWLGGL 639

Query: 666 QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNS 725
           Q++GELDLS N F+GTVPA +GNCS LLKLSL  N+LSG+IPPE+GNLT+LNVL+LQRN+
Sbjct: 640 QKLGELDLSFNFFHGTVPAALGNCSILLKLSLNDNSLSGEIPPEMGNLTSLNVLDLQRNN 699

Query: 726 LSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS 785
           LSG IPST QQCKKLYELRLSEN  TGSIP++LG LTELQVILDLS+N FSGEIP SLG+
Sbjct: 700 LSGQIPSTFQQCKKLYELRLSENMLTGSIPSELGTLTELQVILDLSRNLFSGEIPSSLGN 759

Query: 786 LLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKL 845
           L+KLE LNIS+NQLQG+VP+SLGKLTSLH+L+LSNNHL+GQLP TFS FPLSSF+ N KL
Sbjct: 760 LMKLESLNISFNQLQGEVPSSLGKLTSLHLLDLSNNHLRGQLPSTFSEFPLSSFMLNDKL 819

Query: 846 CGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISN 905
           CGPPL SCSE +GQ+ +R S                                        
Sbjct: 820 CGPPLESCSEYAGQEKRRFS---------------------------------------- 839

Query: 906 SDNGNNGSDQQKREEEKLVYEDDHKRRNGEFWRVT----VPSQSQGEVQNH--ILHFKMD 959
               + G  +   EEEK  Y D+ KR+ GE+W+V     VPSQ +  + +   I   KMD
Sbjct: 840 ----DGGGTEHNIEEEKWDYGDEKKRK-GEYWKVNTMALVPSQEKQNLSSPTCIFQLKMD 894

Query: 960 SKAMNNTRV 968
           S+ M  T V
Sbjct: 895 SETMETTMV 903

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147803521|emb|CAN66422.1| hypothetical protein VITISV_007982 [Vitis vinifera]

 Score = 1012 bits (2616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/830 (66%), Positives = 652/830 (78%), Gaps = 21/830 (2%)

Query: 156 PHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKF 215
           P   +LT L+ L ++     GSIP E+G L++L  L L  N LSG IP  I   ++LQ  
Sbjct: 88  PEFSHLTSLQTLDLSLNAFAGSIPHELGLLQNLRELLLYSNYLSGKIPTEICLLKKLQVL 147

Query: 216 AASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFD---- 271
              +NML G I  SI  LK L++L LA   L+GSIP E+ +L NL++L+L  N       
Sbjct: 148 RIGDNMLAGEITPSIGNLKELRVLGLAYCQLNGSIPAEIGNLKNLKFLDLQKNSLSSVIP 207

Query: 272 -------GEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPI 324
                  G IPSELN+L QL++LDLS NNLSG+I+ LNTQLK+LE L LSDN  T SIP 
Sbjct: 208 EEIQGLSGMIPSELNQLDQLQKLDLSSNNLSGTINFLNTQLKSLEVLALSDNLLTDSIPG 267

Query: 325 KFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDL 384
            FC ++SSL+Q+ LA+NKLSG FPLELL CSS+QQLDLSDN F+G LP  L+KLE LTDL
Sbjct: 268 NFCTSSSSLRQIFLAQNKLSGTFPLELLNCSSIQQLDLSDNRFEGVLPPELEKLENLTDL 327

Query: 385 LLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIP 444
           LLNNNSF+G  PPEIGN+S LE L+LFDNMITG IPVE+GKLQ LS+IYLYDNQ+SGSIP
Sbjct: 328 LLNNNSFSGKLPPEIGNMSSLETLYLFDNMITGNIPVELGKLQKLSSIYLYDNQLSGSIP 387

Query: 445 RELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQI 504
           RELTNCS L+EIDFFGNHF GSIP T+GKL+NLV LQLRQNDLSGPIP SLGYCK+L  +
Sbjct: 388 RELTNCSSLSEIDFFGNHFMGSIPATIGKLRNLVFLQLRQNDLSGPIPPSLGYCKKLHTL 447

Query: 505 ALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY 564
            LADNKLSGS+P TFRFLSEL+L +LYNNSF+GPLP SLF LKKL IINFSHN+FSGSI 
Sbjct: 448 TLADNKLSGSLPPTFRFLSELHLFSLYNNSFEGPLPESLFLLKKLGIINFSHNRFSGSIL 507

Query: 565 PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
           PL GS+ LT LDLTNNSFSGPIPS LAMS+NL+RLRLAHN LTGNI SEFG+L EL FLD
Sbjct: 508 PLLGSDFLTLLDLTNNSFSGPIPSRLAMSKNLTRLRLAHNLLTGNISSEFGQLKELKFLD 567

Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
           LSFN+FTG++AP+LS C KL H+LL+NN+  G IP WLG LQ++GELDLS N F+GTVPA
Sbjct: 568 LSFNNFTGEVAPELSNCKKLEHVLLNNNQFIGMIPSWLGGLQKLGELDLSFNFFHGTVPA 627

Query: 685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR 744
            +GNCS LLKLSL  N+LSG+IPPE+GNLT+LNVL+LQRN+LSG IPST QQCKKLYELR
Sbjct: 628 ALGNCSILLKLSLNDNSLSGEIPPEMGNLTSLNVLDLQRNNLSGQIPSTFQQCKKLYELR 687

Query: 745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804
           LSEN  TGSIP++LG LTELQVILDLS+N FSGEIP SLG+L+KLE LNIS+NQLQG+VP
Sbjct: 688 LSENMLTGSIPSELGTLTELQVILDLSRNLFSGEIPSSLGNLMKLESLNISFNQLQGEVP 747

Query: 805 ASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRL 864
           +SLGKLTSLH+L+LSNNHL+GQLP TFS FPLSSF+ N KLCGPPL SCSE +GQ+ +RL
Sbjct: 748 SSLGKLTSLHLLDLSNNHLRGQLPSTFSEFPLSSFMXNDKLCGPPLESCSEYAGQEKRRL 807

Query: 865 SNTAVVVIITAILFTSAVICLIMLYIMLRIWLNWRQVSISNSDNGNNGSDQQKREEEKLV 924
           SNTAV  II AI+FTS +ICL++LYIM+RIW  WR+V I +SD G     +   EEEK  
Sbjct: 808 SNTAVAGIIVAIVFTSTLICLVLLYIMVRIWCTWRKVMILSSDGGGT---EXNIEEEKWD 864

Query: 925 YEDDHKRRNGEFWRVT----VPSQSQGEVQNH--ILHFKMDSKAMNNTRV 968
           Y D+ KR+ GE+W+V     VPSQ +  + +   I   KMDS+ M  T V
Sbjct: 865 YGDEKKRK-GEYWKVNTMALVPSQEKQNLSSPTCIFQLKMDSETMETTMV 913

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	970
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.912	0.708	0.447	1.1e-192
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.907	0.702	0.440	5.6e-187
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.727	0.640	0.359	4.1e-113
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.695	0.600	0.358	7.8e-110
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.684	0.603	0.364	7.7e-103
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.767	0.634	0.340	4.2e-102
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.716	0.620	0.360	3e-101
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.756	0.653	0.337	6.2e-101
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.775	0.630	0.344	1.3e-98
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.730	0.651	0.351	1.4e-96

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1867 (662.3 bits), Expect = 1.1e-192, P = 1.1e-192
 Identities = 401/896 (44%), Positives = 545/896 (60%)

Query:     9 IMLFFVTLAVALG--GI-STDSFWLLRIKQELV-DPT--GILENWSA-RAHMCSWHGVTC 61
             ++L F+     LG  GI + D   LL +K+ LV +P     L  W++   + CSW GVTC
Sbjct:     6 LLLLFILCFSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTC 65

Query:    62 SDDQK-HVVXXXXXXXXXXXXXXRDFLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXX 120
              +     V+                F    +L  LDLSSN+L G IP+            
Sbjct:    66 DNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLF 125

Query:   121 XYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPV 180
              +SN  +G+IP ++G L  ++ LRIGDN L G+IP  +GNL  L+ LA+A C+L G IP 
Sbjct:   126 LFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPS 185

Query:   181 EIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILN 240
             ++G L  + SL LQ N L G IP  +  C +L  F A+ NML GTIP+ +  L++L+ILN
Sbjct:   186 QLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILN 245

Query:   241 LANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISL 300
             LANNSL+G IP +L  +  L+YL+L+ N   G IP  L  L  L+ LDLS NNL+G I  
Sbjct:   246 LANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPE 305

Query:   301 LNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCXXXXXX 360
                 +  L  LVL++N  +GS+P   C NN++L+QL+L+  +LSGE P+EL +C      
Sbjct:   306 EFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQL 365

Query:   361 XXXXNSFKGELPRSXXXXXXXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMITGKIP 420
                 NS  G +P +               +  G+  P I NL+ L+ L L+ N + GK+P
Sbjct:   366 DLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLP 425

Query:   421 VEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVIL 480
              EI  L+ L  ++LY+N+ SG IP+E+ NC+ L  ID FGNHF G IP ++G+LK L +L
Sbjct:   426 KEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLL 485

Query:   481 QLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLP 540
              LRQN+L G +PASLG C +L  + LADN+LSGS+P +F FL  L  + LYNNS +G LP
Sbjct:   486 HLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLP 545

Query:   541 PSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLR 600
              SL  L+ L  IN SHN+ +G+I+PL GS+S  + D+TNN F   IP EL  S+NL RLR
Sbjct:   546 DSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLR 605

Query:   601 LAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPF 660
             L  N LTG IP   GK+ EL+ LD+S N+ TG I  QL  C KL H+ L+NN L+G IP 
Sbjct:   606 LGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPP 665

Query:   661 WLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLN 720
             WLG L ++GEL LSSN F  ++P E+ NC+KLL LSL GN+L+G IP EIGNL ALNVLN
Sbjct:   666 WLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLN 725

Query:   721 LQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIP 780
             L +N  SG++P  + +  KLYELRLS N  TG IP ++G+L +LQ  LDLS NNF+G+IP
Sbjct:   726 LDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIP 785

Query:   781 PSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXXXXXXXQGQLPLTFSGFPLSSFL 840
              ++G+L KLE L++S+NQL G+VP S+G                G+L   FS +P  SFL
Sbjct:   786 STIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFL 845

Query:   841 GNAKLCGPPLLSCSEL-SGQKVKRLSNTAVVVI--ITAILFTSAVICLIMLYIMLR 893
             GN  LCG PL  C+ + S  K + LS  +VV+I  I+A+     +I +I L+   R
Sbjct:   846 GNTGLCGSPLSRCNRVRSNNKQQGLSARSVVIISAISALTAIGLMILVIALFFKQR 901

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1813 (643.3 bits), Expect = 5.6e-187, P = 5.6e-187
 Identities = 393/892 (44%), Positives = 530/892 (59%)

Query:     9 IMLFFVTLAVALG----GISTDSFWLLRIKQELV-DPT--GILENW-SARAHMCSWHGVT 60
             + LFF+  +  LG    G   D   LL +K   + +P    +L +W S     C+W GVT
Sbjct:     8 LALFFLCFSSGLGSGQPGQRDDLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVT 67

Query:    61 CSDDQKHVVXXXXXXXXXXXXXXRDFLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXX 120
             C    + ++                     +L  +DLSSN L G IP+            
Sbjct:    68 CGG--REIIGLNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESL 125

Query:   121 X-YSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIP 179
               +SN  SG IP ++G L  L+ L++GDN L G IP   GNL  L+ LA+A C+L G IP
Sbjct:   126 HLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIP 185

Query:   180 VEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQIL 239
                G L  L +L LQ N+L G IP  I  C  L  FAA+ N L G++P+ +  LK+LQ L
Sbjct:   186 SRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTL 245

Query:   240 NLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS 299
             NL +NS SG IP +L  L +++YLNL+GN   G IP  L +LA L+ LDLS NNL+G I 
Sbjct:   246 NLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIH 305

Query:   300 LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCXXXXX 359
                 ++  LE LVL+ N  +GS+P   C NN+SL+QL L+  +LSGE P E+  C     
Sbjct:   306 EEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKL 365

Query:   360 XXXXXNSFKGELPRSXXXXXXXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMITGKI 419
                  N+  G++P S               S  G+    I NL+ L+   L+ N + GK+
Sbjct:   366 LDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKV 425

Query:   420 PVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVI 479
             P EIG L  L  +YLY+N+ SG +P E+ NC+ L EID++GN  SG IP ++G+LK+L  
Sbjct:   426 PKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTR 485

Query:   480 LQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPL 539
             L LR+N+L G IPASLG C ++  I LADN+LSGS+P +F FL+ L L  +YNNS +G L
Sbjct:   486 LHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNL 545

Query:   540 PPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRL 599
             P SL  LK L  INFS NKF+GSI PL GS+S  + D+T N F G IP EL  S NL RL
Sbjct:   546 PDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRL 605

Query:   600 RLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP 659
             RL  N  TG IP  FGK++EL+ LD+S NS +G I  +L  C KL H+ L+NN L+G IP
Sbjct:   606 RLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIP 665

Query:   660 FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVL 719
              WLG L  +GEL LSSN F G++P EI + + +L L L GN+L+G IP EIGNL ALN L
Sbjct:   666 TWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL 725

Query:   720 NLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI 779
             NL+ N LSG +PSTI +  KL+ELRLS N  TG IP ++G+L +LQ  LDLS NNF+G I
Sbjct:   726 NLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRI 785

Query:   780 PPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXXXXXXXQGQLPLTFSGFPLSSF 839
             P ++ +L KLE L++S+NQL G+VP  +G               +G+L   FS +   +F
Sbjct:   786 PSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAF 845

Query:   840 LGNAKLCGPPLLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICLIMLYIM 891
             +GNA LCG PL  C+  +G K +R  +   VVII+AI   +A+  ++++ I+
Sbjct:   846 VGNAGLCGSPLSHCNR-AGSKNQRSLSPKTVVIISAISSLAAIALMVLVIIL 896

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
 Identities = 259/721 (35%), Positives = 383/721 (53%)

Query:   184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
             NL++  S D      +G++        E+     S+ +L G +  SI  L  L+ L+L+ 
Sbjct:    47 NLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSY 106

Query:   244 NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
             N LSG IP E+ +  +L  L L  N FDGEIP E+ KL  LE L +  N +SGS+ +   
Sbjct:   107 NGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIG 166

Query:   304 QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCXXXXXXXXX 363
              L +L  LV   N  +G +P +   N   L      +N +SG  P E+  C         
Sbjct:   167 NLLSLSQLVTYSNNISGQLP-RSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLA 225

Query:   364 XNSFKGELPRSXXXXXXXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEI 423
              N   GELP+                 F+G  P EI N + LE L L+ N + G IP E+
Sbjct:   226 QNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKEL 285

Query:   424 GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLR 483
             G LQ+L  +YLY N ++G+IPRE+ N S   EIDF  N  +G IP  +G ++ L +L L 
Sbjct:   286 GDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLF 345

Query:   484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSL 543
             +N L+G IP  L   K L ++ L+ N L+G +PL F++L  L+++ L+ NS  G +PP L
Sbjct:   346 ENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL 405

Query:   544 FQLKKLRIINFSHNKFSGSI--YPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRL 601
                  L +++ S N  SG I  Y    SN +  L+L  N+ SG IP+ +   + L +LRL
Sbjct:   406 GWYSDLWVLDMSDNHLSGRIPSYLCLHSNMII-LNLGTNNLSGNIPTGITTCKTLVQLRL 464

Query:   602 AHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFW 661
             A N+L G  PS   K   +  ++L  N F G I  ++  C+ L  L L++N  TG +P  
Sbjct:   465 ARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPRE 524

Query:   662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL 721
             +G L ++G L++SSN   G VP+EI NC  L +L +  NN SG +P E+G+L  L +L L
Sbjct:   525 IGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKL 584

Query:   722 QRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP 781
               N+LSG IP  +    +L EL++  N F GSIP +LG LT LQ+ L+LS N  +GEIPP
Sbjct:   585 SNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPP 644

Query:   782 SLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXXXXXXXQGQLPLTFSGFPLSSFLG 841
              L +L+ LE L ++ N L G++P+S                  G +PL      +SSF+G
Sbjct:   645 ELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL-LRNISMSSFIG 703

Query:   842 NAKLCGPPLLSC--------SELSGQKVKRLSNTAVVVIITAILF-TSAVICLIMLYIML 892
             N  LCGPPL  C        S+ +G K   + ++ ++ I  A++   S ++  +++Y+M 
Sbjct:   704 NEGLCGPPLNQCIQTQPFAPSQSTG-KPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMR 762

Query:   893 R 893
             R
Sbjct:   763 R 763

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 246/686 (35%), Positives = 368/686 (53%)

Query:   218 SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSE 277
             S+  L G +  SI  L +L  LNLA N+L+G IP E+ +   L  + L  N F G IP E
Sbjct:    93 SSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVE 152

Query:   278 LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI 337
             +NKL+QL   ++  N LSG +      L NLE LV   N  TG +P +   N + L    
Sbjct:   153 INKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLP-RSLGNLNKLTTFR 211

Query:   338 LARNKLSGEFPLELLRCXXXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXSFTGSFPP 397
               +N  SG  P E+ +C          N   GELP+                 F+G  P 
Sbjct:   212 AGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPK 271

Query:   398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID 457
             +IGNL+ LE L L+ N + G IP EIG +++L  +YLY NQ++G+IP+EL   S + EID
Sbjct:   272 DIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEID 331

Query:   458 FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL 517
             F  N  SG IP  + K+  L +L L QN L+G IP  L   + L ++ L+ N L+G +P 
Sbjct:   332 FSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPP 391

Query:   518 TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP-LTGSNSLTALD 576
              F+ L+ +  + L++NS  G +P  L     L +++FS N+ SG I P +   ++L  L+
Sbjct:   392 GFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLN 451

Query:   577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
             L +N   G IP  +   ++L +LR+  N LTG  P+E  KL  L+ ++L  N F+G + P
Sbjct:   452 LGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPP 511

Query:   637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
             ++  C KL  L L+ N+ +  +P  +  L  +   ++SSN+  G +P+EI NC  L +L 
Sbjct:   512 EIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLD 571

Query:   697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA 756
             L  N+  G +PPE+G+L  L +L L  N  SGNIP TI     L EL++  N F+GSIP 
Sbjct:   572 LSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPP 631

Query:   757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXX 816
              LG L+ LQ+ ++LS N+FSGEIPP +G+L  L  L+++ N L G++P +          
Sbjct:   632 QLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGC 691

Query:   817 XXXXXXXQGQLPLT--FSGFPLSSFLGNAKLCGPPLLSCS-------ELSGQKVKRLSNT 867
                     GQLP T  F    L+SFLGN  LCG  L SC         +S  K       
Sbjct:   692 NFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWPHISSLKAGSARRG 751

Query:   868 AVVVIITAILFTSAVICLIMLYIMLR 893
              +++I+++++   +++ + ++   LR
Sbjct:   752 RIIIIVSSVIGGISLLLIAIVVHFLR 777

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 246/675 (36%), Positives = 351/675 (52%)

Query:   219 NNM-LEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSE 277
             N M L GT+   I  L  L+ LN++ N +SG IP +LS   +L  L+L  N F G IP +
Sbjct:    75 NGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQ 134

Query:   278 LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI 337
             L  +  L++L L +N L GSI      L +L+ LV+  N  TG IP         L+ + 
Sbjct:   135 LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMA-KLRQLRIIR 193

Query:   338 LARNKLSGEFPLELLRCXXXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXSFTGSFPP 397
               RN  SG  P E+  C          N  +G LP+                  +G  PP
Sbjct:   194 AGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPP 253

Query:   398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID 457
              +GN+S+LE L L +N  TG IP EIGKL  +  +YLY NQ++G IPRE+ N     EID
Sbjct:   254 SVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEID 313

Query:   458 FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL 517
             F  N  +G IP+  G + NL +L L +N L GPIP  LG    L+++ L+ N+L+G++P 
Sbjct:   314 FSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQ 373

Query:   518 TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP-LTGSNSLTALD 576
               +FL  L  + L++N  +G +PP +       +++ S N  SG I        +L  L 
Sbjct:   374 ELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLS 433

Query:   577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
             L +N  SG IP +L   ++L++L L  N LTG++P E   L  L  L+L  N  +G I+ 
Sbjct:   434 LGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISA 493

Query:   637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
              L K   L  L L+NN  TG IP  +G+L +I   ++SSN   G +P E+G+C  + +L 
Sbjct:   494 DLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLD 553

Query:   697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA 756
             L GN  SG I  E+G L  L +L L  N L+G IP +     +L EL+L  N  + +IP 
Sbjct:   554 LSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPV 613

Query:   757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXX 816
             +LG+LT LQ+ L++S NN SG IP SLG+L  LE L ++ N+L G++PAS+G        
Sbjct:   614 ELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLIC 673

Query:   817 XXXXXXXQGQLPLT--FSGFPLSSFLGNAKLCGPPLLSCSEL---SGQKVKRLSNTAV-- 869
                     G +P T  F     S+F GN  LC      C  L   S  K+  L N +   
Sbjct:   674 NISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGSQRQ 733

Query:   870 -VVIITAILFTSAVI 883
              ++ IT I+  S  +
Sbjct:   734 KILTITCIVIGSVFL 748

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 257/754 (34%), Positives = 367/754 (48%)

Query:     9 IMLFFVTLAVALGGISTDSFWLLRIKQELV-DPTGILENWSARAHM--CSWHGVTCSDDQ 65
             +  FF  +A+A      +   L   K  +  DP G+L +W+    +  C+W G+TC D  
Sbjct:    13 LTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITC-DST 71

Query:    66 KHVVXXXXXXXXXXXXXXRDFLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNS 125
              HVV                  NLT L+ LDL+SNS TG IP+E            Y N 
Sbjct:    72 GHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNY 131

Query:   126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
             FSG IP  I  L  +  L + +NLL G++P  I   + L  +   Y  L G IP  +G+L
Sbjct:   132 FSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDL 191

Query:   186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
              HL       N L+G IP +I     L     S N L G IP     L +LQ L L  N 
Sbjct:   192 VHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENL 251

Query:   246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL 305
             L G IP E+ +  +L  L L  N   G+IP+EL  L QL+ L + KN L+ SI     +L
Sbjct:   252 LEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRL 311

Query:   306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCXXXXXXXXXXN 365
               L  L LS+N   G I  +     S L+ L L  N  +GEFP  +             N
Sbjct:   312 TQLTHLGLSENHLVGPISEEIGFLES-LEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFN 370

Query:   366 SFKGELPRSXXXXXXXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK 425
             +  GELP                   TG  P  I N + L+ L L  N +TG+IP   G+
Sbjct:   371 NISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGR 430

Query:   426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
             +  L+ I +  N  +G IP ++ NCS L  +    N+ +G++   +GKL+ L ILQ+  N
Sbjct:   431 MN-LTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYN 489

Query:   486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ 545
              L+GPIP  +G  K L  + L  N  +G +P     L+ L  + +Y+N  +GP+P  +F 
Sbjct:   490 SLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFD 549

Query:   546 LKKLRIINFSHNKFSGSIYPLTGS-NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHN 604
             +K L +++ S+NKFSG I  L     SLT L L  N F+G IP+ L     L+   ++ N
Sbjct:   550 MKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDN 609

Query:   605 HLTGNIPSEF-GKLTELN-FLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWL 662
              LTG IP E    L  +  +L+ S N  TG I  +L K   +  + LSNN  +G+IP  L
Sbjct:   610 LLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSL 669

Query:   663 GSLQEIGELDLSSNNFNGTVPAEI-GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL 721
              + + +  LD S NN +G +P E+      ++ L+L  N+ SG+IP   GN+T L  L+L
Sbjct:   670 QACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDL 729

Query:   722 QRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755
               N+L+G IP ++     L  L+L+ N   G +P
Sbjct:   730 SSNNLTGEIPESLANLSTLKHLKLASNNLKGHVP 763

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 256/710 (36%), Positives = 357/710 (50%)

Query:   184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
             +L +L  +DL MN LSG IP       +L  F  S N L G I  S+  LK+L +L L  
Sbjct:   100 SLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQ 159

Query:   244 NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
             N L+  IP EL ++ ++  L L  N   G IPS L  L  L  L L +N L+G I     
Sbjct:   160 NYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELG 219

Query:   304 QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCXXXXXXXXX 363
              ++++  L LS N  TGSIP     N  +L  L L  N L+G  P E+            
Sbjct:   220 NMESMTDLALSQNKLTGSIPSTLG-NLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALS 278

Query:   364 XNSFKGELPRSXXXXXXXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEI 423
              N   G +P S                 TG  PP++GN+  + +L L +N +TG IP  +
Sbjct:   279 QNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSL 338

Query:   424 GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLR 483
             G L+ L+ +YLY+N ++G IP EL N   + ++    N  +GSIP + G LKNL  L L 
Sbjct:   339 GNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLY 398

Query:   484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSL 543
              N L+G IP  LG  + +  + L+ NKL+GSVP +F   ++L  + L  N   G +PP +
Sbjct:   399 LNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGV 458

Query:   544 FQLKKLRIINFSHNKFSGSIYPLT--GSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRL 601
                  L  +    N F+G  +P T      L  + L  N   GPIP  L   ++L R R 
Sbjct:   459 ANSSHLTTLILDTNNFTG-FFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARF 517

Query:   602 AHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFW 661
               N  TG+I   FG   +LNF+D S N F G+I+    K  KL  L++SNN +TG IP  
Sbjct:   518 LGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTE 577

Query:   662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL 721
             + ++ ++ ELDLS+NN  G +P  IGN + L +L L GN LSG++P  +  LT L  L+L
Sbjct:   578 IWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDL 637

Query:   722 QRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP 781
               N+ S  IP T     KL+++ LS N F GSIP  L +LT+L   LDLS N   GEIP 
Sbjct:   638 SSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQ-LDLSHNQLDGEIPS 695

Query:   782 SLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXXXXXXXQGQLP--LTFSGFPLSSF 839
              L SL  L++L++S+N L G +P +                 +G LP   TF      + 
Sbjct:   696 QLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADAL 755

Query:   840 LGNAKLCG--PP--LLSCSELSGQKVKRLSNTAVVVIITAILFTSAVICL 885
               N  LC   P   L  C EL  +K K+  N  VV I+  IL    ++ +
Sbjct:   756 EENIGLCSNIPKQRLKPCREL--KKPKKNGNL-VVWILVPILGVLVILSI 802

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 255/755 (33%), Positives = 367/755 (48%)

Query:   154 IPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQ 213
             +PP + +  ++       C   G   +   + K++ SL+   +++SG +   I   + LQ
Sbjct:    46 VPPQVTSTWKINASEATPCNWFG---ITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQ 102

Query:   214 KFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGE 273
                 S N   GTIPS++     L  L+L+ N  S  IP  L  L  L  L L  N   GE
Sbjct:   103 ILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGE 162

Query:   274 IPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSL 333
             +P  L ++ +L+ L L  NNL+G I       K L  L +  N F+G+IP     N+SSL
Sbjct:   163 LPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIG-NSSSL 221

Query:   334 QQLILARNKLSGEFPLELLRCXXXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXSFTG 393
             Q L L RNKL G  P  L             NS +G +                   F G
Sbjct:   222 QILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEG 281

Query:   394 SFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGL 453
               PP +GN S L+ L +    ++G IP  +G L+ L+ + L +N++SGSIP EL NCS L
Sbjct:   282 GVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSL 341

Query:   454 TEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSG 513
               +    N   G IP  +GKL+ L  L+L +N  SG IP  +   + L Q+ +  N L+G
Sbjct:   342 NLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTG 401

Query:   514 SVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP-LTGSNSL 572
              +P+    + +L + TL+NNSF G +PP L     L  ++F  NK +G I P L     L
Sbjct:   402 ELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKL 461

Query:   573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG 632
               L+L +N   G IP+ +   + + R  L  N+L+G +P EF +   L+FLD + N+F G
Sbjct:   462 RILNLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLLP-EFSQDHSLSFLDFNSNNFEG 520

Query:   633 QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692
              I   L  C  L+ + LS N  TG IP  LG+LQ +G ++LS N   G++PA++ NC  L
Sbjct:   521 PIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSL 580

Query:   693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752
              +  +  N+L+G +P    N   L  L L  N  SG IP  + + KKL  L+++ N F G
Sbjct:   581 ERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGIPQFLPELKKLSTLQIARNAFGG 640

Query:   753 SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXX 812
              IP+ +G + +L   LDLS N  +GEIP  LG L+KL RLNIS N L G +    G    
Sbjct:   641 EIPSSIGLIEDLIYDLDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSLSVLKGLTSL 700

Query:   813 XXXXXXXXXXXQGQLPLTFSGFPLS---SFLGNAKLCGPPLLS-----------CSELSG 858
                         G +P    G  LS   SF GN  LC P   S           C + S 
Sbjct:   701 LHVDVSNNQFT-GPIPDNLEGQLLSEPSSFSGNPNLCIPHSFSASNNSRSALKYCKDQSK 759

Query:   859 QKVKRLSNTAVVVIITAILFTSAVICLIMLYIMLR 893
              +   LS   +V+I         V+ L +++I LR
Sbjct:   760 SRKSGLSTWQIVLIAVLSSLLVLVVVLALVFICLR 794

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 266/773 (34%), Positives = 387/773 (50%)

Query:   123 SNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEI 182
             S S  G+IP EI  L  L+ L +  N   G+IPP I NL  L+ L ++   L G +P  +
Sbjct:    74 SLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLL 133

Query:   183 GNLKHLTSLDLQMNKLSGLIPEAIH-GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241
               L  L  LDL  N  SG +P +       L     SNN L G IP  I  L +L  L +
Sbjct:   134 SELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYM 193

Query:   242 ANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLL 301
               NS SG IP E+ ++  L+        F+G +P E++KL  L +LDLS N L  SI   
Sbjct:   194 GLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKS 253

Query:   302 NTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCXXXXXXX 361
               +L NL  L L      G IP +   N  SL+ L+L+ N LSG  PLEL          
Sbjct:   254 FGELHNLSILNLVSAELIGLIPPELG-NCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSA 312

Query:   362 XXXNSFKGELPRSXXXXXXXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMITGKIPV 421
                N   G LP                  F+G  P EI +   L++L L  N+++G IP 
Sbjct:   313 ER-NQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPR 371

Query:   422 EIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQ 481
             E+    +L AI L  N +SG+I      CS L E+    N  +GSIPE + KL  L+ L 
Sbjct:   372 ELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLP-LMALD 430

Query:   482 LRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPP 541
             L  N+ +G IP SL     L +   + N+L G +P      + L  + L +N   G +P 
Sbjct:   431 LDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPR 490

Query:   542 SLFQLKKLRIINFSHNKFSGSI-YPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLR 600
              + +L  L ++N + N F G I   L    SLT LDL +N+  G IP ++     L  L 
Sbjct:   491 EIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLV 550

Query:   601 LAHNHLTGNIPSE----FGKLT--ELNFL------DLSFNSFTGQIAPQLSKCAKLAHLL 648
             L++N+L+G+IPS+    F ++   +L+FL      DLS+N  +G I  +L +C  L  + 
Sbjct:   551 LSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEIS 610

Query:   649 LSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPP 708
             LSNN L+G IP  L  L  +  LDLS N   G++P E+GN  KL  L+L  N L+G IP 
Sbjct:   611 LSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPE 670

Query:   709 EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVIL 768
               G L +L  LNL +N L G +P+++   K+L  + LS N  +G + ++L  + +L V L
Sbjct:   671 SFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKL-VGL 729

Query:   769 DLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXXXXXXXQGQLP 828
              + +N F+GEIP  LG+L +LE L++S N L G++P  +                +G++P
Sbjct:   730 YIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVP 789

Query:   829 LT-FSGFPLSSFL-GNAKLCGPPLLSCSELSGQKVKRLSNTAVVVI-ITAILF 878
                    P  + L GN +LCG  + S  ++ G K++     A +++  T I+F
Sbjct:   790 SDGVCQDPSKALLSGNKELCGRVVGSDCKIEGTKLRSAWGIAGLMLGFTIIVF 842

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 960 (343.0 bits), Expect = 1.4e-96, P = 1.4e-96
 Identities = 254/723 (35%), Positives = 362/723 (50%)

Query:   178 IPVEIGNL-KHLTSLDLQMNK-LSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKS 235
             +P+E+ +  K  TS     N    G+I +      E    +AS   L G + S I  LKS
Sbjct:    44 VPLEVASTWKENTSETTPCNNNWFGVICDLSGNVVETLNLSASG--LSGQLGSEIGELKS 101

Query:   236 LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLS 295
             L  L+L+ NS SG +P  L +  +L YL+L  N F GE+P     L  L  L L +NNLS
Sbjct:   102 LVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLS 161

Query:   296 GSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCX 355
             G I      L  L  L +S N  +G+IP +   N S L+ L L  NKL+G  P  L    
Sbjct:   162 GLIPASVGGLIELVDLRMSYNNLSGTIP-ELLGNCSKLEYLALNNNKLNGSLPASLYLLE 220

Query:   356 XXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXSFTGSFPPEIGNLSKLENLFLFDNMI 415
                      NS  G L                   F G  PPEIGN S L +L +    +
Sbjct:   221 NLGELFVSNNSLGGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSSLHSLVMVKCNL 280

Query:   416 TGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLK 475
             TG IP  +G L+ +S I L DN++SG+IP+EL NCS L  +    N   G IP  + KLK
Sbjct:   281 TGTIPSSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQLQGEIPPALSKLK 340

Query:   476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
              L  L+L  N LSG IP  +   + L Q+ + +N L+G +P+    L  L  +TL+NN F
Sbjct:   341 KLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGF 400

Query:   536 KGPLPPSLFQLKKLRIINFSHNKFSGSIYP-LTGSNSLTALDLTNNSFSGPIPSELAMSR 594
              G +P SL   + L  ++   N+F+G I P L     L    L +N   G IP+ +   +
Sbjct:   401 YGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCK 460

Query:   595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
              L R+RL  N L+G +P EF +   L++++L  NSF G I   L  C  L  + LS N+L
Sbjct:   461 TLERVRLEDNKLSGVLP-EFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKL 519

Query:   655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT 714
             TG IP  LG+LQ +G L+LS N   G +P+++  C++LL   +  N+L+G IP    +  
Sbjct:   520 TGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWK 579

Query:   715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNN 774
             +L+ L L  N+  G IP  + +  +L +LR++ N F G IP+ +G L  L+  LDLS N 
Sbjct:   580 SLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANV 639

Query:   775 FSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXXXXXXXQGQLPLTFSGF 834
             F+GEIP +LG+L+ LERLNIS N+L G +   L                 G +P+     
Sbjct:   640 FTGEIPTTLGALINLERLNISNNKLTGPLSV-LQSLKSLNQVDVSYNQFTGPIPVNLLSN 698

Query:   835 PLSSFLGNAKLCGPPLLSCSELSGQKVKRLS-----NTAVVVIITAILFTSAVICLIMLY 889
               S F GN  LC     S S +  ++ K        +T  + +I A    S +  L  L+
Sbjct:   699 S-SKFSGNPDLCIQASYSVSAIIRKEFKSCKGQVKLSTWKIALIAAGSSLSVLALLFALF 757

Query:   890 IML 892
             ++L
Sbjct:   758 LVL 760

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	970
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-101
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-100
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-21
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	6e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  339 bits (872), Expect = e-101
 Identities = 213/572 (37%), Positives = 305/572 (53%), Gaps = 31/572 (5%)

Query: 279 NKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLIL 338
           N  +++  +DLS  N+SG IS    +L  ++T+ LS+N  +G IP      +SSL+ L L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 339 ARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE 398
           + N  +G  P   +    L+ LDLS+N   GE+P  +     L  L L  N   G  P  
Sbjct: 126 SNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDF 458
           + NL+ LE L L  N + G+IP E+G++++L  IYL  N +SG IP E+   + L  +D 
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 459 FGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLT 518
             N+ +G IP ++G LKNL  L L QN LSGPIP S+   ++L  + L+DN LSG +P  
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSI-YPLTGSNSLTALDL 577
              L  L ++ L++N+F G +P +L  L +L+++    NKFSG I   L   N+LT LDL
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363

Query: 578 TNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ 637
           + N+ +G IP  L  S NL +L L  N L G IP   G    L  + L  NSF+G++  +
Sbjct: 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423

Query: 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSL 697
            +K   +  L +SNN L G I      +  +  L L+ N F G +P   G+  +L  L L
Sbjct: 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDL 482

Query: 698 RGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD 757
             N  SG +P ++G+L+ L  L L  N LSG IP  +  CKKL                 
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL----------------- 525

Query: 758 LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLN 817
                   V LDLS N  SG+IP S   +  L +L++S NQL G++P +LG + SL  +N
Sbjct: 526 --------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577

Query: 818 LSNNHLQGQLPLT--FSGFPLSSFLGNAKLCG 847
           +S+NHL G LP T  F     S+  GN  LCG
Sbjct: 578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  335 bits (860), Expect = e-100
 Identities = 236/714 (33%), Positives = 341/714 (47%), Gaps = 128/714 (17%)

Query: 30  LLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNL 89
           LL  K  + DP   L NW++ A +C W G+TC++    VV ++LS   +SG IS     L
Sbjct: 34  LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRL 92

Query: 90  TSLETLDLSSNSLTGLIPSELGQL-QNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148
             ++T++LS+N L+G IP ++     +LR L L +N+F+G IP   G +  L+ L + +N
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN 150

Query: 149 LLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHG 208
           +L GEIP  IG+ + L+                         LDL               
Sbjct: 151 MLSGEIPNDIGSFSSLK------------------------VLDL--------------- 171

Query: 209 CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN 268
                      N+L G IP+S+  L SL+ L LA+N L G IP EL  + +L+++ L  N
Sbjct: 172 ---------GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 269 IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL 328
              GEIP E+  L  L  LDL  NNL+G I      LKNL+ L L  N  +G IP     
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-- 280

Query: 329 NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNN 388
              SLQ+LI                      LDLSDNS  GE+P       EL       
Sbjct: 281 --FSLQKLI---------------------SLDLSDNSLSGEIP-------EL------- 303

Query: 389 NSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELT 448
                     +  L  LE L LF N  TGKIPV +  L  L  + L+ N+ SG IP+ L 
Sbjct: 304 ----------VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 449 NCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALAD 508
             + LT +D   N+ +G IPE +    NL  L L  N L G IP SLG C+ L+++ L D
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 509 NKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTG 568
           N  SG +P  F  L  +Y + + NN+ +G +    + +  L++++ + NKF G +    G
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
           S  L  LDL+ N FSG                         +P + G L+EL  L LS N
Sbjct: 474 SKRLENLDLSRNQFSGA------------------------VPRKLGSLSELMQLKLSEN 509

Query: 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGN 688
             +G+I  +LS C KL  L LS+N+L+G IP     +  + +LDLS N  +G +P  +GN
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569

Query: 689 CSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSL--SGNIPSTIQQCKKL 740
              L+++++  N+L G +P   G   A+N   +  N     G+  S +  CK++
Sbjct: 570 VESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV 622

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 99.5 bits (248), Expect = 2e-21
 Identities = 50/102 (49%), Positives = 64/102 (62%), Gaps = 5/102 (4%)

Query: 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811
           G IP D+ +L  LQ I +LS N+  G IPPSLGS+  LE L++SYN   G +P SLG+LT
Sbjct: 432 GFIPNDISKLRHLQSI-NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 812 SLHVLNLSNNHLQGQLPLTFSGFPLS----SFLGNAKLCGPP 849
           SL +LNL+ N L G++P    G  L     +F  NA LCG P
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 80.6 bits (199), Expect = 2e-15
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 56  WHGVTCSDDQKH----VVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELG 111
           W G  C  D       + GL L + GL G I  D   L  L++++LS NS+ G IP  LG
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 112 QLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIG 159
            + +L +L L  NSF+G IP  +G L  L++L +  N L G +P  +G
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.3 bits (193), Expect = 8e-15
 Identities = 37/80 (46%), Positives = 52/80 (65%)

Query: 417 GKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKN 476
           G IP +I KL+ L +I L  N + G+IP  L + + L  +D   N F+GSIPE++G+L +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 477 LVILQLRQNDLSGPIPASLG 496
           L IL L  N LSG +PA+LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 1e-13
 Identities = 45/131 (34%), Positives = 65/131 (49%), Gaps = 26/131 (19%)

Query: 668 IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS 727
           I  L L +    G +P +I     L  ++L GN++ G IPP +G++T+L VL+       
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD------- 472

Query: 728 GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS-L 786
                            LS N F GSIP  LG+LT L+ IL+L+ N+ SG +P +LG  L
Sbjct: 473 -----------------LSYNSFNGSIPESLGQLTSLR-ILNLNGNSLSGRVPAALGGRL 514

Query: 787 LKLERLNISYN 797
           L     N + N
Sbjct: 515 LHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 36/89 (40%), Positives = 51/89 (57%)

Query: 623 LDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTV 682
           L L      G I   +SK   L  + LS N + G IP  LGS+  +  LDLS N+FNG++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 683 PAEIGNCSKLLKLSLRGNNLSGKIPPEIG 711
           P  +G  + L  L+L GN+LSG++P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.3 bits (180), Expect = 3e-13
 Identities = 37/88 (42%), Positives = 48/88 (54%)

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           L L    L G IP  I     LQ    S N + G IP S+  + SL++L+L+ NS +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 251 PVELSHLFNLRYLNLLGNIFDGEIPSEL 278
           P  L  L +LR LNL GN   G +P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 1e-12
 Identities = 34/88 (38%), Positives = 52/88 (59%)

Query: 647 LLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
           L L N  L G IP  +  L+ +  ++LS N+  G +P  +G+ + L  L L  N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 707 PPEIGNLTALNVLNLQRNSLSGNIPSTI 734
           P  +G LT+L +LNL  NSLSG +P+ +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.4 bits (175), Expect = 1e-12
 Identities = 36/92 (39%), Positives = 50/92 (54%)

Query: 574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ 633
            L L N    G IP++++  R+L  + L+ N + GNIP   G +T L  LDLS+NSF G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 634 IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSL 665
           I   L +   L  L L+ N L+G +P  LG  
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 5e-12
 Identities = 34/81 (41%), Positives = 47/81 (58%)

Query: 128 GKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKH 187
           G IP +I  L  LQ + +  N + G IPP +G++T L  L ++Y   NGSIP  +G L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 188 LTSLDLQMNKLSGLIPEAIHG 208
           L  L+L  N LSG +P A+ G
Sbjct: 492 LRILNLNGNSLSGRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 1e-11
 Identities = 35/81 (43%), Positives = 47/81 (58%)

Query: 174 LNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLL 233
           L G IP +I  L+HL S++L  N + G IP ++     L+    S N   G+IP S+  L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 234 KSLQILNLANNSLSGSIPVEL 254
            SL+ILNL  NSLSG +P  L
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)

Query: 219 NNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSEL 278
           N  L G IP+ I  L+ LQ +NL+ NS+ G+IP  L  + +L  L+L  N F+G IP  L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 279 NKLAQLEELDLSKNNLSGSI-SLLNTQLKNLETLVLSDNAFTGSIP 323
            +L  L  L+L+ N+LSG + + L  +L +  +   +DNA    IP
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 36/85 (42%), Positives = 49/85 (57%)

Query: 239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
           L L N  L G IP ++S L +L+ +NL GN   G IP  L  +  LE LDLS N+ +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 299 SLLNTQLKNLETLVLSDNAFTGSIP 323
                QL +L  L L+ N+ +G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 7e-11
 Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 530 LYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGS-NSLTALDLTNNSFSGPIPS 588
           L N   +G +P  + +L+ L+ IN S N   G+I P  GS  SL  LDL+ NSF+G IP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 589 ELAMSRNLSRLRLAHNHLTGNIPSEFGKL----TELNFLD 624
            L    +L  L L  N L+G +P+  G         NF D
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 31/82 (37%), Positives = 47/82 (57%)

Query: 343 LSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNL 402
           L G  P ++ +   LQ ++LS NS +G +P SL  +  L  L L+ NSF GS P  +G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 403 SKLENLFLFDNMITGKIPVEIG 424
           + L  L L  N ++G++P  +G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 31/88 (35%), Positives = 48/88 (54%)

Query: 360 LDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKI 419
           L L +   +G +P  + KL  L  + L+ NS  G+ PP +G+++ LE L L  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 420 PVEIGKLQTLSAIYLYDNQMSGSIPREL 447
           P  +G+L +L  + L  N +SG +P  L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 436 DNQ-MSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPAS 494
           DNQ + G IP +++    L  I+  GN   G+IP ++G + +L +L L  N  +G IP S
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 495 LGYCKRLQQIALADNKLSGSVP 516
           LG    L+ + L  N LSG VP
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 5e-10
 Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 95  LDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEI 154
           L L +  L G IP+++ +L++L+ + L  NS  G IPP +G +  L+VL +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 155 PPHIGNLTELRELAIAYCQLNGSIPVEIGN-LKHLTSLDLQMNKLSGL--IPEAIHGC 209
           P  +G LT LR L +    L+G +P  +G  L H  S +   N  +GL  IP  +  C
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN--AGLCGIP-GLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 30/68 (44%), Positives = 39/68 (57%)

Query: 333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT 392
           LQ + L+ N + G  P  L   +SL+ LDLS NSF G +P SL +L  L  L LN NS +
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 393 GSFPPEIG 400
           G  P  +G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 480 LQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPL 539
           L L    L G IP  +   + LQ I L+ N + G++P +   ++ L ++ L  NSF G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 540 PPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL--TALDLTNNS 581
           P SL QL  LRI+N + N  SG +    G   L   + + T+N+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 287 LDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGE 346
           L L    L G I    ++L++L+++ LS N+  G+IP     + +SL+ L L+ N  +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS 481

Query: 347 FPLELLRCSSLQQLDLSDNSFKGELPRSL 375
            P  L + +SL+ L+L+ NS  G +P +L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 78/261 (29%), Positives = 119/261 (45%), Gaps = 12/261 (4%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+L+ + L  +IS     LT+L +LDL +N++T + P       NL+ L L  N     +
Sbjct: 98  LDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SL 155

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
           P  +  L  L+ L +  N L  ++P  + NL+ L  L ++  +++  +P EI  L  L  
Sbjct: 156 PSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEE 213

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           LDL  N +   +  ++   + L     SNN LE  +P SI  L +L+ L+L+NN +  S 
Sbjct: 214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SS 269

Query: 251 PVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLET 310
              L  L NLR L+L GN     +P     L  LE L    N L    +L       L  
Sbjct: 270 ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELL---LNLLLTLKALELKLNSILLN 326

Query: 311 LVLSDNAFTGSIPIKFCLNNS 331
             +  N  T S P    +  S
Sbjct: 327 NNILSNGET-SSPEALSILES 346

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 4e-08
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 465 GSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSE 524
           G IP  + KL++L  + L  N + G IP SLG    L+ + L+ N  +GS+P +   L+ 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 525 LYLITLYNNSFKGPLPPSLFQLKKLR-IINFSHN 557
           L ++ L  NS  G +P +L      R   NF+ N
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 86/257 (33%), Positives = 122/257 (47%), Gaps = 13/257 (5%)

Query: 570 NSLTALDLTNNSFSGPIPSELAMSR--NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSF 627
           + L +LDL + S    +     +     L  L L  N L  NI     +LT L  LDL  
Sbjct: 67  SRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDN 125

Query: 628 NSFTGQIAPQLSK-CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI 686
           N+ T  I P +    + L  L LS+N++  ++P  L +L  +  LDLS N+ +  +P  +
Sbjct: 126 NNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL 182

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
            N S L  L L GN +S  +PPEI  L+AL  L+L  NS+   + S++   K L  L LS
Sbjct: 183 SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240

Query: 747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPAS 806
            N     +P  +G L+ L+  LDLS N        SLGSL  L  L++S N L   +P  
Sbjct: 241 NNKLE-DLPESIGNLSNLE-TLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLI 296

Query: 807 LGKLTSLHVLNLSNNHL 823
              L  L +L      L
Sbjct: 297 ALLLLLLELLLNLLLTL 313

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 6e-07
 Identities = 86/269 (31%), Positives = 126/269 (46%), Gaps = 12/269 (4%)

Query: 213 QKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDG 272
           +     ++     +PSS+  L SL +L+ +  S S      L +L  L  L+L  N    
Sbjct: 49  RLALNLSSNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRS 107

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAF-TGSIPIKFCLNNS 331
            I SEL +L  L  LDL  NN++    L+     NL+ L LSDN   +   P++   N  
Sbjct: 108 NI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPN-- 164

Query: 332 SLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
            L+ L L+ N LS + P  L   S+L  LDLS N    +LP  ++ L  L +L L+NNS 
Sbjct: 165 -LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI 221

Query: 392 TGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCS 451
                  + NL  L  L L +N +   +P  IG L  L  + L +NQ+  S    L + +
Sbjct: 222 I-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSISSLGSLT 277

Query: 452 GLTEIDFFGNHFSGSIPETMGKLKNLVIL 480
            L E+D  GN  S ++P     L  L +L
Sbjct: 278 NLRELDLSGNSLSNALPLIALLLLLLELL 306

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 72/255 (28%), Positives = 124/255 (48%), Gaps = 11/255 (4%)

Query: 63  DDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLY 122
            +  ++  L+L ++ ++       L  ++L+ LDLS N +   +PS L  L NL+ L L 
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171

Query: 123 SNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEI 182
            N  S  +P  +  L+ L  L +  N +  ++PP I  L+ L EL ++   +   +   +
Sbjct: 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSL 228

Query: 183 GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLA 242
            NLK+L+ L+L  NKL   +PE+I     L+    SNN +  +  SS+  L +L+ L+L+
Sbjct: 229 SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLS 285

Query: 243 NNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
            NSLS ++P+    L  L  L L   +    +  +LN +     +    +N   S     
Sbjct: 286 GNSLSNALPLIAL-LLLLLELLLNLLLTLKALELKLNSILLNNNIL---SNGETSSPEAL 341

Query: 303 TQLKNLETLVLSDNA 317
           + L++L  L   DNA
Sbjct: 342 SILESLNNLWTLDNA 356

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 80/316 (25%), Positives = 121/316 (38%), Gaps = 78/316 (24%)

Query: 69  VGLNLSSSG---LSG-SISRDFLNL-TSLETLDLSSNSLTGLIPSELGQLQNLRILLLY- 122
            G+NL S     LSG S  + F ++ T++  LDL   ++    PS L +L+NL  L+L  
Sbjct: 699 TGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE-FPSNL-RLENLDELILCE 756

Query: 123 --SNSFSGKIPPEIGFLN----KLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNG 176
             S     ++ P    +      L  L + D     E+P  I NL +L  L I  C    
Sbjct: 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFA-ASNNMLEGTIPSSIVLLKS 235
           ++P  I NL+ L SLDL              GC  L+ F   S N+ +            
Sbjct: 817 TLPTGI-NLESLESLDLS-------------GCSRLRTFPDISTNISD------------ 850

Query: 236 LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLS 295
              LNL+   +                          E+P  + K + L  LD++  N  
Sbjct: 851 ---LNLSRTGIE-------------------------EVPWWIEKFSNLSFLDMNGCNNL 882

Query: 296 GSISLLNTQLKNLETLVLSD-NAFTGSIPIKFCLNNSSLQQLILARN---KLSGEFPLEL 351
             +SL  ++LK+LET+  SD  A T +       N S  +  +   N   KL     +  
Sbjct: 883 QRVSLNISKLKHLETVDFSDCGALTEAS-----WNGSPSEVAMATDNIHSKLPSTVCINF 937

Query: 352 LRCSSLQQLDLSDNSF 367
           + C +L Q  L     
Sbjct: 938 INCFNLDQEALLQQQS 953

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 81/292 (27%), Positives = 115/292 (39%), Gaps = 35/292 (11%)

Query: 322 IPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEEL 381
                     +   L L+ N L    P  L R  SL  L  S  S        L+ L  L
Sbjct: 38  PDSNLESVAVNRLALNLSSNTLL-LLPSSLSRLLSLDLLSPSGISSLDGSENLLN-LLPL 95

Query: 382 TDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKL-QTLSAIYLYDNQMS 440
             L LN N    +   E+  L+ L +L L +N IT  IP  IG L   L  + L DN++ 
Sbjct: 96  PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE 153

Query: 441 GSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKR 500
            S+P  L N   L  +D   N  S  +P+ +  L NL  L L  N +S  +P  +     
Sbjct: 154 -SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA 210

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS 560
           L+++ L++N +                           L  SL  LK L  +  S+NK  
Sbjct: 211 LEELDLSNNSII-------------------------ELLSSLSNLKNLSGLELSNNKLE 245

Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPS 612
                +   ++L  LDL+NN  S    S L    NL  L L+ N L+  +P 
Sbjct: 246 DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 30 LLRIKQELV-DPTGILENWSARA-HMCSWHGVTCS 62
          LL  K  L  DP+G L +W+  +   CSW GVTC 
Sbjct: 8  LLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 63/246 (25%), Positives = 88/246 (35%), Gaps = 34/246 (13%)

Query: 612 SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAK----LAHLLLSNNELTGTIPFW------ 661
               KL  L  L L  N+   + A  L+   +    L  L LS NE              
Sbjct: 17  ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76

Query: 662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSK---LLKLSLRGNNLSGKIPPEIG-----NL 713
           L     + ELDLS N         + +  +   L +L L  N L  +    +        
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 714 TALNVLNLQRNSLSGN----IPSTIQQCKKLYELRLSENFFTGSIPADLGR-LTELQ--V 766
            AL  L L RN L G     +   ++  + L EL L+ N    +    L   L       
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 767 ILDLSKNNFSGE----IPPSLGSLLKLERLNISYNQLQGQ-----VPASLGKLTSLHVLN 817
           +LDL+ N  + E    +  +L SL  LE LN+  N L          A L    SL  L+
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256

Query: 818 LSNNHL 823
           LS N +
Sbjct: 257 LSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSF 126
           L+LS++ L+      F  L +L+ LDLS N+LT + P     L +LR L L  N+ 
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL 246
           +L SLDL  N+L+ +   A  G   L+    S N L    P +   L SL+ L+L+ N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 767 ILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHL 823
            LDLS N  +     +   L  L+ L++S N L    P +   L SL  L+LS N+L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 23/60 (38%), Positives = 26/60 (43%)

Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
           NL  L L++N LT      F  L  L  LDLS N+ T       S    L  L LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 164 LRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNML 222
           L+ L ++  +L   IP      L +L  LDL  N L+ + PEA  G   L+    S N L
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 23/60 (38%), Positives = 24/60 (40%)

Query: 643 KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
            L  L LSNN LT         L  +  LDLS NN     P        L  L L GNNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 54/233 (23%), Positives = 83/233 (35%), Gaps = 55/233 (23%)

Query: 181 EIGNLKHLTSLDLQMNKLSGLIPEAIHGC-------EELQKFAASNNMLEGTIPSSIVLL 233
           E+  +  L  +DL  N +     E +            +    A     +  + S++V+L
Sbjct: 25  ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML 84

Query: 234 -------KSLQILNLANNSLSGSIPVEL----SHLFNLRYLNL----LGNIFDGEIPSEL 278
                    LQ ++L++N+     P EL    S   +L +L L    LG I  G I   L
Sbjct: 85  LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKAL 144

Query: 279 NKLAQ---------LEELDLSKNNL-SGSISLLNTQLK---NLETLVLSDNAFTGSIPIK 325
             LA          LE +   +N L +GS  L    L+   NL+ + +  N         
Sbjct: 145 FHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-------- 196

Query: 326 FCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKL 378
             +    +  L            L L    SL+ LDL DN+F  E  R L   
Sbjct: 197 --IRPEGVTMLAF----------LGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	970
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PLN03150	623	hypothetical protein; Provisional	99.57
PLN03150	623	hypothetical protein; Provisional	99.53
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.79
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.79
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.85
PRK15386	426	type III secretion protein GogB; Provisional	97.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.43
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
PRK15386	426	type III secretion protein GogB; Provisional	97.34
KOG4341	483	consensus F-box protein containing LRR [General fu	97.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.26
KOG4341	483	consensus F-box protein containing LRR [General fu	97.22
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.18
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.13
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.88
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.36
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.02
KOG4308	478	consensus LRR-containing protein [Function unknown	91.61
KOG4308	478	consensus LRR-containing protein [Function unknown	91.25
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.31
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	86.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.81
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	85.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	85.63

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-72  Score=709.34  Aligned_cols=586  Identities=39%  Similarity=0.623  Sum_probs=390.4

Q ss_pred             hhcCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECC
Q 036729           19 ALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLS   98 (970)
Q Consensus        19 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls   98 (970)
                      .+...++|+.||++||+++.+|.+.+.+|...++||.|.||+|++ .++|+.|+|+++.++|.++..|..+++|++|+|+
T Consensus        23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls  101 (968)
T PLN00113         23 FSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS  101 (968)
T ss_pred             ccCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECC
Confidence            344467899999999999988877889998788999999999984 5799999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccc-CCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccC
Q 036729           99 SNSLTGLIPSELG-QLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGS  177 (970)
Q Consensus        99 ~n~~~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~  177 (970)
                      +|.+.+.+|..+. .+++||+|+|++|.+++.+|.  +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus       102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence            9999999998765 899999999999999988885  4578888888888888777777777777777777777766666


Q ss_pred             CCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCC
Q 036729          178 IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHL  257 (970)
Q Consensus       178 ~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  257 (970)
                      +|..++++++|++|++++|.+++..|.                        .++.+++|++|++++|.+++.+|..++++
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~------------------------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  235 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPR------------------------ELGQMKSLKWIYLGYNNLSGEIPYEIGGL  235 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCCh------------------------HHcCcCCccEEECcCCccCCcCChhHhcC
Confidence            666666666666666666665555444                        44455555555555555555555555566


Q ss_pred             CCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEE
Q 036729          258 FNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI  337 (970)
Q Consensus       258 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  337 (970)
                      ++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+..+++|+                            
T Consensus       236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----------------------------  287 (968)
T PLN00113        236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI----------------------------  287 (968)
T ss_pred             CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC----------------------------
Confidence            6666666666666666666666666666666666555443333333222222                            


Q ss_pred             ccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccc
Q 036729          338 LARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITG  417 (970)
Q Consensus       338 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  417 (970)
                                           +|++++|.+.+.+|..                        +.++++|+.|++++|.+.+
T Consensus       288 ---------------------~L~Ls~n~l~~~~p~~------------------------~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        288 ---------------------SLDLSDNSLSGEIPEL------------------------VIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             ---------------------EEECcCCeeccCCChh------------------------HcCCCCCcEEECCCCccCC
Confidence                                 2222222222222222                        2222233333333333332


Q ss_pred             cCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccc
Q 036729          418 KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGY  497 (970)
Q Consensus       418 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  497 (970)
                      .+|..                        +..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+  
T Consensus       323 ~~~~~------------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--  376 (968)
T PLN00113        323 KIPVA------------------------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--  376 (968)
T ss_pred             cCChh------------------------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--
Confidence            22222                        2233333334443333333333333333333333333333222211111  


Q ss_pred             cccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEEC
Q 036729          498 CKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDL  577 (970)
Q Consensus       498 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l  577 (970)
                                                                                                      
T Consensus       377 --------------------------------------------------------------------------------  376 (968)
T PLN00113        377 --------------------------------------------------------------------------------  376 (968)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCC
Q 036729          578 TNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT  657 (970)
Q Consensus       578 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~  657 (970)
                                   ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|.+++.
T Consensus       377 -------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  443 (968)
T PLN00113        377 -------------CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR  443 (968)
T ss_pred             -------------hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence                         1112223333333333344455555566666677777766666666666666666666666666665


Q ss_pred             ccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcc
Q 036729          658 IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQC  737 (970)
Q Consensus       658 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l  737 (970)
                      +|..+..+++|+.|++++|++.+.+|                        ..+ ..++|+.|++++|++++.+|..+.++
T Consensus       444 ~~~~~~~l~~L~~L~L~~n~~~~~~p------------------------~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        444 INSRKWDMPSLQMLSLARNKFFGGLP------------------------DSF-GSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             cChhhccCCCCcEEECcCceeeeecC------------------------ccc-ccccceEEECcCCccCCccChhhhhh
Confidence            55555555555555555555554444                        332 23566667777777777777777777


Q ss_pred             cCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEe
Q 036729          738 KKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLN  817 (970)
Q Consensus       738 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~  817 (970)
                      ++|+.|+|++|++++.+|..++.++.|+. |++++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++++
T Consensus       499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  577 (968)
T PLN00113        499 SELMQLKLSENKLSGEIPDELSSCKKLVS-LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN  577 (968)
T ss_pred             hccCEEECcCCcceeeCChHHcCccCCCE-EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence            77778888888888888888888888887 88888888889999999999999999999999999999999999999999


Q ss_pred             cCCCcccccCC--ccccCCCCcccCCCCCCCCCC
Q 036729          818 LSNNHLQGQLP--LTFSGFPLSSFLGNAKLCGPP  849 (970)
Q Consensus       818 ls~N~l~g~~p--~~~~~~~~~~~~~n~~lc~~~  849 (970)
                      +++|+++|.+|  ++|..+...++.||+.+||.+
T Consensus       578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999  667788888999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.2e-58  Score=576.14  Aligned_cols=511  Identities=36%  Similarity=0.599  Sum_probs=410.4

Q ss_pred             CCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccc-cccccccccCCcccccCCCCcCCCCcCCCCeeec
Q 036729          332 SLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLD-KLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFL  410 (970)
Q Consensus       332 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  410 (970)
                      +++.|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L  147 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL  147 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence            344444444444444444555566666666666666555554433 566666666666666655553  34566677777


Q ss_pred             ccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCC
Q 036729          411 FDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGP  490 (970)
Q Consensus       411 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  490 (970)
                      ++|.+++.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+++.
T Consensus       148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  227 (968)
T PLN00113        148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE  227 (968)
T ss_pred             cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence            77766666666666677777777777776666666677777777777777777766677777777777777777777777


Q ss_pred             CCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccC-CCCCC
Q 036729          491 IPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY-PLTGS  569 (970)
Q Consensus       491 ~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~  569 (970)
                      +|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+ .+..+
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  307 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL  307 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777776655 45667


Q ss_pred             CcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEc
Q 036729          570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLL  649 (970)
Q Consensus       570 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L  649 (970)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l  387 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL  387 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence            78888888888888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccc
Q 036729          650 SNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN  729 (970)
Q Consensus       650 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  729 (970)
                      ++|++.+.+|.++..+++|+.|++++|++++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.
T Consensus       388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~  467 (968)
T PLN00113        388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG  467 (968)
T ss_pred             cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             cchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCC
Q 036729          730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGK  809 (970)
Q Consensus       730 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~  809 (970)
                      +|..+ ..++|+.|++++|++++.+|..+..++.|+. |++++|.++|.+|..++++++|++|++++|+++|.+|..+..
T Consensus       468 ~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  545 (968)
T PLN00113        468 LPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQ-LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE  545 (968)
T ss_pred             cCccc-ccccceEEECcCCccCCccChhhhhhhccCE-EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence            98766 4589999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             CCcCcEEecCCCcccccCCccccCCC---CcccCCCCCCC
Q 036729          810 LTSLHVLNLSNNHLQGQLPLTFSGFP---LSSFLGNAKLC  846 (970)
Q Consensus       810 l~~L~~l~ls~N~l~g~~p~~~~~~~---~~~~~~n~~lc  846 (970)
                      +++|+.||+++|+++|.+|..+....   .....+|+..+
T Consensus       546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             cccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999999999999996655433   23455665444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=319.68  Aligned_cols=373  Identities=23%  Similarity=0.233  Sum_probs=327.3

Q ss_pred             CCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccc
Q 036729          453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYN  532 (970)
Q Consensus       453 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  532 (970)
                      -+.||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+++.|+|.+|.++.+....+..++.|+.||++.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            356788888887777777788888888888888777 4566555556688888888888877777888888888888888


Q ss_pred             cccccCCCccccCCCCCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC
Q 036729          533 NSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP  611 (970)
Q Consensus       533 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  611 (970)
                      |.++......|..-.++++|++++|+++.... .|.++.+|..|.++.|+++...+..|.+++.|+.|+|..|++.-.--
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            88887766777777788889999998876433 67788899999999999998888888899999999999999875445


Q ss_pred             cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCc
Q 036729          612 SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSK  691 (970)
Q Consensus       612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  691 (970)
                      ..|.++++|+.|.+..|.+...-...|..|.++++|+|+.|++...-..|+-+++.|+.|++|.|.+..+.++.+..+++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk  318 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK  318 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence            68999999999999999999888888999999999999999999888899999999999999999999999999999999


Q ss_pred             ceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCch---hhhhhhhhHhhh
Q 036729          692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA---DLGRLTELQVIL  768 (970)
Q Consensus       692 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~---~l~~l~~L~~~L  768 (970)
                      |++|+|++|+++...+..|..|..|+.|.|+.|.+...-...|..+++|++|||++|.+++.|.+   .|..++.|+. |
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk-L  397 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK-L  397 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh-e
Confidence            99999999999999899999999999999999999988888899999999999999999987764   4677999998 9


Q ss_pred             hCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          769 DLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       769 ~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +|.+|++...-..+|..+..||.|||.+|.|-...|.+|..+ .|+.|-+..-.+-|.|.
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence            999999997666899999999999999999999999999999 89999999888888887

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-37  Score=321.63  Aligned_cols=362  Identities=23%  Similarity=0.270  Sum_probs=183.3

Q ss_pred             CEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccc
Q 036729          358 QQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDN  437 (970)
Q Consensus       358 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  437 (970)
                      +.|++++|.+....+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.++..-...+..++.|+.|+|+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            34566666555555555555555555555555555 44444444444555555555555444445555555555555555


Q ss_pred             cCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCc
Q 036729          438 QMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL  517 (970)
Q Consensus       438 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~  517 (970)
                      .++..--..|..-.++++|++++|.|+..-...|..+.+|..|.|+.|.++...+..|..+++|+.|+|..|++.-....
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            55544333444444555555555555555445555555555555555555544444555555555555555555544444


Q ss_pred             chhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCC
Q 036729          518 TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNL  596 (970)
Q Consensus       518 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  596 (970)
                      .|.++++|+.|.+..|.+...-...|..+.+++.|+++.|++...-. .+.++++|+.|++++|.+..+-++.+..+++|
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence            55555555555555555555444555555555555555555443222 34444555555555555544444445555555


Q ss_pred             CceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccc---cccccCccceEEc
Q 036729          597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPF---WLGSLQEIGELDL  673 (970)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L  673 (970)
                      ++|+|++|+++...+..|..+..|++|.|++|+++..-...|..+++|++|+|++|.++..+.+   .|.++++|+.|++
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence            5555555555544444444555555555555554444444444445555555555544443322   2334444444455


Q ss_pred             ccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceecc
Q 036729          674 SSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL  721 (970)
Q Consensus       674 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L  721 (970)
                      .+|++..+...+|.++.+|+.|||.+|.|..+-|..|..+ .|+.|.+
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            5544444333444444444444444444444444444444 4444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5e-39  Score=323.52  Aligned_cols=495  Identities=28%  Similarity=0.393  Sum_probs=237.5

Q ss_pred             CCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEE
Q 036729          232 LLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETL  311 (970)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  311 (970)
                      .-..|+.|.+++|.+. .+-..+.++..|.+|++++|+++ ..|++++.+..++.++.++|++.. +|..+..+.+|..+
T Consensus        43 ~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKL  119 (565)
T ss_pred             hhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhh
Confidence            3445566666666655 23344566666666666666665 345556666666666666666653 34445556666666


Q ss_pred             EccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccc
Q 036729          312 VLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF  391 (970)
Q Consensus       312 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  391 (970)
                      ++++|.+. .+|+.++. +..++.++..+|++. ..|..+..|.++..+++.+|.+....|+.+. ++.|++++...|-+
T Consensus       120 ~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  120 DCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL  195 (565)
T ss_pred             hcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence            66666665 23333331 333444444444443 2334444555566666666665544333333 55666666555555


Q ss_pred             cCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcc-cccCCCCCEEeccccccCCccccc
Q 036729          392 TGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSGSIPET  470 (970)
Q Consensus       392 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~  470 (970)
                      . .+|+.++.+.+|+.|++..|.+. .+| .|..+..|++++++.|++. .+|.+ ..+++++..||++.|++. ..|+.
T Consensus       196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde  270 (565)
T KOG0472|consen  196 E-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE  270 (565)
T ss_pred             h-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence            4 55555566666666666666554 333 4555555555555555554 23332 235555555555555554 44555


Q ss_pred             ccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCc
Q 036729          471 MGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLR  550 (970)
Q Consensus       471 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  550 (970)
                      +.-+++|.+||+++|.+++ .|..++++ .|+.|.+.+|.+..+-.+.+..-+ -               ..   ++.|+
T Consensus       271 ~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT-~---------------~v---LKyLr  329 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGT-Q---------------EV---LKYLR  329 (565)
T ss_pred             HHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccH-H---------------HH---HHHHH
Confidence            5555555555555555553 34445555 555555555554321111000000 0               00   00000


Q ss_pred             EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCC---CcEEEccC
Q 036729          551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTE---LNFLDLSF  627 (970)
Q Consensus       551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~Ls~  627 (970)
                      . .+..-.++..     .-.+-..-+..     ...........+.+.|+++.-+++ .+|+....-..   ....+++.
T Consensus       330 s-~~~~dglS~s-----e~~~e~~~t~~-----~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  330 S-KIKDDGLSQS-----EGGTETAMTLP-----SESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             H-hhccCCCCCC-----cccccccCCCC-----CCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEeccc
Confidence            0 0000000000     00000000000     001111223344555566555555 34443332222   55566666


Q ss_pred             CcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC
Q 036729          628 NSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP  707 (970)
Q Consensus       628 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  707 (970)
                      |++. .+|..+..+..+.+.-+..|+..+.+|..+..+++|..|+|++|-+. .+|..++.+-.|+.|+++.|++. .+|
T Consensus       398 NqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP  474 (565)
T KOG0472|consen  398 NQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLP  474 (565)
T ss_pred             chHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cch
Confidence            6665 45555555544444333333334455555555666666666555544 34444555555555555555554 344


Q ss_pred             cccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCC
Q 036729          708 PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL  787 (970)
Q Consensus       708 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~  787 (970)
                      .++..+..++.+-.++|++....|+.+.++.+|+.|||.+|                         .+. .||+.+++++
T Consensus       475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-------------------------dlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-------------------------DLQ-QIPPILGNMT  528 (565)
T ss_pred             HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-------------------------chh-hCChhhcccc
Confidence            44444444444444445554444444444444444444444                         443 4555555555


Q ss_pred             CCCEEeCCCCcCc
Q 036729          788 KLERLNISYNQLQ  800 (970)
Q Consensus       788 ~L~~L~ls~N~l~  800 (970)
                      +|++|++++|.+.
T Consensus       529 nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  529 NLRHLELDGNPFR  541 (565)
T ss_pred             ceeEEEecCCccC
Confidence            5555555555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.2e-38  Score=316.88  Aligned_cols=492  Identities=29%  Similarity=0.368  Sum_probs=254.1

Q ss_pred             CCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhh
Q 036729           89 LTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELA  168 (970)
Q Consensus        89 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  168 (970)
                      -..|+.|++++|.+. .+.+.+.++..|.+|++++|.+. .+|++++.+..++.++.++|++ ..+|+.++.+.+|++++
T Consensus        44 qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLD  120 (565)
T ss_pred             hcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhh
Confidence            345677777777776 33445667777777777777776 6666777777777777777766 35666677777777777


Q ss_pred             ccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 036729          169 IAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG  248 (970)
Q Consensus       169 L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  248 (970)
                      .++|.+. .+|++++.+..|..|+..+|+++.. |+++..+.+|..+++.+|.+....|. .-+++.|++||.-.|-++ 
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccccC-chHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-
Confidence            7777665 5555666666666666666666533 44444555555555555555422222 222445555554444433 


Q ss_pred             ccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhc
Q 036729          249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL  328 (970)
Q Consensus       249 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  328 (970)
                      .                        +|+.++.+.+|+.|++.+|.+... | .|..|..|++++++.|.+. .+|.+.+.
T Consensus       197 t------------------------lP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~  249 (565)
T KOG0472|consen  197 T------------------------LPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIE-MLPAEHLK  249 (565)
T ss_pred             c------------------------CChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHH-hhHHHHhc
Confidence            3                        344455555555555555554422 2 4555555555555555554 55666665


Q ss_pred             CCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcC---CC
Q 036729          329 NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLS---KL  405 (970)
Q Consensus       329 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L  405 (970)
                      +++++..||++.|+++ ..|..+.-+.+|++||+|+|.++ ..|..++++ +|+.|.+.+|++.. +-..+-+..   -|
T Consensus       250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vL  325 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVL  325 (565)
T ss_pred             ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHH
Confidence            5555555555555554 34444445666666666666666 345556666 66666666666541 111111110   01


Q ss_pred             CeeecccccccccCCccccCCCCCCEEEccccc-CCCcCCcccccCCCCCEEeccccccCCcccccccCC--CCccEEee
Q 036729          406 ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQ-MSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKL--KNLVILQL  482 (970)
Q Consensus       406 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L  482 (970)
                      ++|.=   .+...-   +.+-   +.=.-..-. ..+..| ......+.+.|++++-+++....+.|..-  .-....++
T Consensus       326 KyLrs---~~~~dg---lS~s---e~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf  395 (565)
T KOG0472|consen  326 KYLRS---KIKDDG---LSQS---EGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF  395 (565)
T ss_pred             HHHHH---hhccCC---CCCC---cccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence            11110   000000   0000   000000000 000001 11223345555555555553322223211  12445556


Q ss_pred             ccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccc
Q 036729          483 RQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGS  562 (970)
Q Consensus       483 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  562 (970)
                      +.|++. .+|..+..+..+...-+..|+..+.+|..+..+++|..|++++|.+. .+|..++.+..|+.++++.|+|.  
T Consensus       396 skNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr--  471 (565)
T KOG0472|consen  396 SKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR--  471 (565)
T ss_pred             ccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc--
Confidence            666555 34444444444433333333333344444444455555555444433 23444444444444444444432  


Q ss_pred             cCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcC
Q 036729          563 IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCA  642 (970)
Q Consensus       563 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~  642 (970)
                                            ..|.++.....++.+-.++|++....|+.+.+|.+|..||+.+|.+. .+|+.+++|+
T Consensus       472 ----------------------~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  472 ----------------------MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             ----------------------cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence                                  35555555555666666667776555556777777777777777766 4566677777


Q ss_pred             cccEEEccCCccc
Q 036729          643 KLAHLLLSNNELT  655 (970)
Q Consensus       643 ~L~~L~L~~n~l~  655 (970)
                      +|++|.+.+|.|.
T Consensus       529 nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  529 NLRHLELDGNPFR  541 (565)
T ss_pred             ceeEEEecCCccC
Confidence            7777777777665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-36  Score=330.17  Aligned_cols=464  Identities=27%  Similarity=0.336  Sum_probs=356.3

Q ss_pred             CcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeeccc
Q 036729          333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD  412 (970)
Q Consensus       333 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  412 (970)
                      ++.|+++.|.+.....+....+-+|+.|++++|++. ..|..+..+.+|+.|.++.|-+. ..|....++.+|+++.|.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence            555555555444332333334555777777777765 56667777777888888877776 5666777778888888887


Q ss_pred             ccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCC
Q 036729          413 NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIP  492 (970)
Q Consensus       413 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  492 (970)
                      |.+. ..|..+..+.+|++|+++.|++. .+|..+..++.++.++.++|......+    ... .+.+++..|.+.+.++
T Consensus       101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~~~  173 (1081)
T KOG0618|consen  101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGSFL  173 (1081)
T ss_pred             chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccchh
Confidence            7776 67777788888888888888775 667777777888888888773222222    222 6677777777777777


Q ss_pred             CcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcc
Q 036729          493 ASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL  572 (970)
Q Consensus       493 ~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L  572 (970)
                      ..+..+..  .+++.+|.+.   ......+.+|+.+....|++....    ..-++++.|+.++|.++ ....-....+|
T Consensus       174 ~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~-~~~~~p~p~nl  243 (1081)
T KOG0618|consen  174 IDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLT-TLDVHPVPLNL  243 (1081)
T ss_pred             cchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcce-eeccccccccc
Confidence            77766665  6888888876   233556677777777777765431    23467888999999887 33334445689


Q ss_pred             cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729          573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN  652 (970)
Q Consensus       573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n  652 (970)
                      +.+++++|++++ +|.++..|.+|+.++..+|+++ .+|..+...++|+.|++..|.+. .+|+.....++|++|+|..|
T Consensus       244 ~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  244 QYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             eeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence            999999999986 4599999999999999999995 78888899999999999999998 56777788999999999999


Q ss_pred             cccCCccccccccCc-cceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccc
Q 036729          653 ELTGTIPFWLGSLQE-IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP  731 (970)
Q Consensus       653 ~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  731 (970)
                      ++....+..+.-+.. |..|..+.|++....-..=...+.|+.|++.+|.++...-+.+.+.+.|+.|+|++|++.....
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa  400 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA  400 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence            998655544444444 7788888888875432222357789999999999998888889999999999999999987777


Q ss_pred             hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729          732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT  811 (970)
Q Consensus       732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~  811 (970)
                      ..+.++..|++|+||+|+++ .+|..+..+..|++ |...+|.+. ..| .+.++++|+.+|+|.|+|+...-.....-+
T Consensus       401 s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t-L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p  476 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT-LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP  476 (1081)
T ss_pred             HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH-HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence            78899999999999999999 88999999999998 999999998 566 899999999999999999876443333448


Q ss_pred             cCcEEecCCCc
Q 036729          812 SLHVLNLSNNH  822 (970)
Q Consensus       812 ~L~~l~ls~N~  822 (970)
                      .|++||+++|.
T Consensus       477 ~LkyLdlSGN~  487 (1081)
T KOG0618|consen  477 NLKYLDLSGNT  487 (1081)
T ss_pred             ccceeeccCCc
Confidence            99999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=6.6e-34  Score=315.70  Aligned_cols=506  Identities=27%  Similarity=0.318  Sum_probs=319.9

Q ss_pred             EEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCc
Q 036729          263 LNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNK  342 (970)
Q Consensus       263 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  342 (970)
                      +|++.+++. .+|..+-.-..++.|++..|.+-..+-+.....-+|+.|++++|.+. ..|..+.. ...|+.|.++.|.
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~-l~~L~~ln~s~n~   79 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITL-LSHLRQLNLSRNY   79 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhh-HHHHhhcccchhh
Confidence            445555554 44544444444777777777655433233333444777777777665 44544442 4555666666555


Q ss_pred             CCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCcc
Q 036729          343 LSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVE  422 (970)
Q Consensus       343 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  422 (970)
                      +. ..|....++.+|+++.|.+|.+. ..|..+..+++|+.|+++.|.+. .+|..+..++.++.+..++|.....    
T Consensus        80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----  152 (1081)
T KOG0618|consen   80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----  152 (1081)
T ss_pred             Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----
Confidence            54 23345555555666666555554 45555555555666666655554 4555555555555555555522111    


Q ss_pred             ccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCccccccccc
Q 036729          423 IGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQ  502 (970)
Q Consensus       423 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~  502 (970)
                      +++.. ++.+++..|.+.+.++..+..+..  .||+++|.+. .  -.+..+.+|+.+....|+++...    ..-+   
T Consensus       153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~---  219 (1081)
T KOG0618|consen  153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGP---  219 (1081)
T ss_pred             hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCc---
Confidence            11111 445555555555544444444433  4555555544 1  12333444444444444443210    1223   


Q ss_pred             EEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCC
Q 036729          503 QIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSF  582 (970)
Q Consensus       503 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l  582 (970)
                                           +++.|+.+.|.++...+  .....+|++++++.|++++...-+..+.+|+.++..+|.+
T Consensus       220 ---------------------~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  220 ---------------------SLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             ---------------------chheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence                                 44444444554442211  1123455566666666654444445556666666666666


Q ss_pred             CCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCc-ccEEEccCCcccCCcccc
Q 036729          583 SGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAK-LAHLLLSNNELTGTIPFW  661 (970)
Q Consensus       583 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~-L~~L~L~~n~l~~~~p~~  661 (970)
                      + .+|..+....+|+.+.+.+|.+. .+|.....+++|++|||..|++....+..+.-... |..|+.+.|++....-..
T Consensus       277 ~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~  354 (1081)
T KOG0618|consen  277 V-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE  354 (1081)
T ss_pred             H-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc
Confidence            3 46777777788888888888887 56667777889999999999888544433443333 777788888876443222


Q ss_pred             ccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCc
Q 036729          662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY  741 (970)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  741 (970)
                      =...+.|+.|++.+|.++...-+.+.+..+|+.|+|++|++.......+.++..|+.|+|++|+++ .+|.++.++..|+
T Consensus       355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH  433 (1081)
T ss_pred             chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH
Confidence            234678999999999999877677889999999999999998655567889999999999999997 5679999999999


Q ss_pred             EEECccccccccCchhhhhhhhhHhhhhCCCCccccc-CCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCC
Q 036729          742 ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGE-IPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN  820 (970)
Q Consensus       742 ~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~-ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~  820 (970)
                      +|...+|++. ..| ++.+++.|+. +|+|.|+++.. +|..... ++|++|||++|.-.-.--+.|..+.++..+++.-
T Consensus       434 tL~ahsN~l~-~fP-e~~~l~qL~~-lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~  509 (1081)
T KOG0618|consen  434 TLRAHSNQLL-SFP-ELAQLPQLKV-LDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL  509 (1081)
T ss_pred             HHhhcCCcee-ech-hhhhcCcceE-EecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence            9999999998 677 8999999998 99999999854 4444333 8999999999975434445666777788888877


Q ss_pred             C
Q 036729          821 N  821 (970)
Q Consensus       821 N  821 (970)
                      |
T Consensus       510 ~  510 (1081)
T KOG0618|consen  510 N  510 (1081)
T ss_pred             C
Confidence            7

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.1e-32  Score=291.30  Aligned_cols=366  Identities=29%  Similarity=0.439  Sum_probs=260.5

Q ss_pred             CEEeccccccC-CcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccc
Q 036729          454 TEIDFFGNHFS-GSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYN  532 (970)
Q Consensus       454 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  532 (970)
                      +-+|+++|.++ +..|.....+++++.|.|...++. .+|..++.+.+|+.|.+++|++... -..+..++.|+.+++..
T Consensus        10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRD   87 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhc
Confidence            33444444444 234444444444444444444443 3444445555555555555544321 12234455555555555


Q ss_pred             ccccc-CCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC
Q 036729          533 NSFKG-PLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP  611 (970)
Q Consensus       533 n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  611 (970)
                      |++.. -+|..+..+..|+.||+|+|++......+...+++-+|++++|++..+....|.+++.|-.||||+|++. .+|
T Consensus        88 N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LP  166 (1255)
T KOG0444|consen   88 NNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLP  166 (1255)
T ss_pred             cccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcC
Confidence            55543 3666777778888888888888765556777777788888888887655566777888888888888887 567


Q ss_pred             cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCccc-CCccccccccCccceEEcccCcCcCCCCCCCCCCC
Q 036729          612 SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT-GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCS  690 (970)
Q Consensus       612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  690 (970)
                      ..+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|..+.++.
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~  245 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR  245 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh
Confidence            77888888888888888876555556667788888888876643 457888888888888888888887 7788888888


Q ss_pred             cceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc-cCchhhhhhhhhHhhhh
Q 036729          691 KLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG-SIPADLGRLTELQVILD  769 (970)
Q Consensus       691 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~~L~  769 (970)
                      +|+.|+|++|+|+.. ........+|++|+++.|+++ .+|+.+..++.|+.|++.+|+++- -||..+|.+..|+. +.
T Consensus       246 ~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev-f~  322 (1255)
T KOG0444|consen  246 NLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV-FH  322 (1255)
T ss_pred             hhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH-HH
Confidence            888888888888743 334556677888888888887 677888888888888888888763 57888888888887 88


Q ss_pred             CCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       770 ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      .++|.+. ..|..+..+..|+.|.|++|++. .+|+++.-++.|++||+..|+---..|
T Consensus       323 aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  323 AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            8888887 77888888888888888888886 578888888888888888886543333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.8e-32  Score=289.85  Aligned_cols=364  Identities=28%  Similarity=0.403  Sum_probs=220.2

Q ss_pred             CCCCcEEECCCCCCCC-CCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchh
Q 036729           89 LTSLETLDLSSNSLTG-LIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELREL  167 (970)
Q Consensus        89 l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L  167 (970)
                      ++..+-.|+++|.++| .+|.....+++++.|.|....+. .+|+.++.|.+|++|.+++|++. .+-..+..++.||.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            4445555666666653 35666666666666666666655 56666666666666666666543 223345556666666


Q ss_pred             hcccccccc-CCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcc-cccCCCCCcEEEccCCc
Q 036729          168 AIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPS-SIVLLKSLQILNLANNS  245 (970)
Q Consensus       168 ~L~~~~~~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~  245 (970)
                      .+..|++.. -+|..+.++..|+.||||+|++. ..|..+...+++-+|++++|++. .+|. -+.+++.|-.|||++|+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence            666666542 35556666666666666666665 33555666666666666666665 3333 33466666666666666


Q ss_pred             CccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCc-cccccccCCCCCccEEEccCCcccCCCch
Q 036729          246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLS-GSISLLNTQLKNLETLVLSDNAFTGSIPI  324 (970)
Q Consensus       246 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  324 (970)
                      +. .+|+.+..+.+|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|..+..+.+|..++++.|.+. .+|.
T Consensus       162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            65 44555666666666666666554333333444556666666655432 235555666666666666666665 4455


Q ss_pred             hhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccC-CCCcCCCCcC
Q 036729          325 KFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG-SFPPEIGNLS  403 (970)
Q Consensus       325 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~  403 (970)
                      .+.. .++|+.|+|++|.++. +........+|++|++|.|+++ .+|+++..++.|+.|.+.+|+++- -+|+.++.+.
T Consensus       240 cly~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  240 CLYK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             HHhh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            4442 5555555555555542 1222334566777777777776 667777777777777777777652 3666677777


Q ss_pred             CCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEecccccc
Q 036729          404 KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHF  463 (970)
Q Consensus       404 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  463 (970)
                      +|+.+..++|.+. .+|..+..+..|+.|.++.|.+. .+|..+.-++.|+.||+..|.-
T Consensus       317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            7777777777665 66667777777777777777665 4566666666677777766653

>PLN03210 Resistant to P

Probab=99.88  E-value=1.1e-21  Score=246.90  Aligned_cols=358  Identities=23%  Similarity=0.285  Sum_probs=216.4

Q ss_pred             CCEEEEECCCCCCcc--ccccCccCCCCCcEEECCCCCC------CCCCCccccCCC-CCcEeecCCCcCcCCCCcCCCC
Q 036729           66 KHVVGLNLSSSGLSG--SISRDFLNLTSLETLDLSSNSL------TGLIPSELGQLQ-NLRILLLYSNSFSGKIPPEIGF  136 (970)
Q Consensus        66 ~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~L~Ls~n~~------~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~  136 (970)
                      .+|..+.+.-..+..  ..+..|.++++|+.|.+..+..      ...+|..+..++ +||+|++.++.+. .+|..+ .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence            456655554333321  1124567777788877765432      223555555553 4777777777665 566655 4


Q ss_pred             CCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCccccccc
Q 036729          137 LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFA  216 (970)
Q Consensus       137 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  216 (970)
                      ..+|++|++.+|.+. .++..+..+++|++|+++++...+.+| .++.+++|++|++++|.....+|..+..+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            567777777776653 455555666666666666655444454 355566666666666554444555555555555555


Q ss_pred             ccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCcc
Q 036729          217 ASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG  296 (970)
Q Consensus       217 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  296 (970)
                      +++|..-+.+|..+ ++++|+.|++++|.....+|..   .++|++|++++|.+. .+|..+                  
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~------------------  744 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL------------------  744 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc------------------
Confidence            55544333444433 4455555555555433333321   234444444444443 223222                  


Q ss_pred             ccccccCCCCCccEEEccCCccc---C---CCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCC
Q 036729          297 SISLLNTQLKNLETLVLSDNAFT---G---SIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE  370 (970)
Q Consensus       297 ~~~~~~~~l~~L~~L~L~~n~l~---~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~  370 (970)
                             .+++|++|++.++...   +   .++......+++|+.|++++|...+.+|..+.++++|+.|++++|...+.
T Consensus       745 -------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        745 -------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET  817 (1153)
T ss_pred             -------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence                   2344444444432110   0   11111122356788888888877777788888888888888888765556


Q ss_pred             CCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccC
Q 036729          371 LPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC  450 (970)
Q Consensus       371 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  450 (970)
                      +|..+ .+++|+.|++++|.....+|..   .++|+.|++++|.++ .+|.++..+++|+.|++++|+-...+|..+..+
T Consensus       818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L  892 (1153)
T PLN03210        818 LPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL  892 (1153)
T ss_pred             eCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence            66655 6788888888888655555543   357888999998887 578888889999999999876666677778888


Q ss_pred             CCCCEEeccccc
Q 036729          451 SGLTEIDFFGNH  462 (970)
Q Consensus       451 ~~L~~L~l~~n~  462 (970)
                      ++|+.+++++|.
T Consensus       893 ~~L~~L~l~~C~  904 (1153)
T PLN03210        893 KHLETVDFSDCG  904 (1153)
T ss_pred             cCCCeeecCCCc
Confidence            899999888774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=1.1e-21  Score=246.83  Aligned_cols=307  Identities=21%  Similarity=0.242  Sum_probs=161.2

Q ss_pred             cccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCC
Q 036729          500 RLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTN  579 (970)
Q Consensus       500 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~  579 (970)
                      +|+.|.+.++.+. .+|..| ...+|..|++.+|.+.. ++..+..+++|+.++++++.....++.+..+++|+.|++++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~  666 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSD  666 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecC
Confidence            3555555554443 233333 23455555555555442 33344455555666665554434444555555666666666


Q ss_pred             CCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCcc
Q 036729          580 NSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP  659 (970)
Q Consensus       580 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p  659 (970)
                      |.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..   ..+|+.|++++|.+. .+|
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP  741 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFP  741 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccc
Confidence            55545555556666666666666654444455443 4566666666666544444432   234566666666654 334


Q ss_pred             ccccccCccceEEcccCcC-------cCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccch
Q 036729          660 FWLGSLQEIGELDLSSNNF-------NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS  732 (970)
Q Consensus       660 ~~l~~l~~L~~L~Ls~N~l-------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~  732 (970)
                      ..+ .+++|++|++.++..       ....+..+..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus       742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence            332 345555555554321       111111122345566666666655555666666666666666666544444554


Q ss_pred             hhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCc
Q 036729          733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTS  812 (970)
Q Consensus       733 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~  812 (970)
                      .+ ++++|+.|++++|.....+|...   ..++. |+|++|.++ .+|.++..+++|+.|++++|+--..+|..+..+++
T Consensus       821 ~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL~~-L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~  894 (1153)
T PLN03210        821 GI-NLESLESLDLSGCSRLRTFPDIS---TNISD-LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH  894 (1153)
T ss_pred             CC-CccccCEEECCCCCccccccccc---cccCE-eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence            43 45666666666654443444332   23444 566666665 45666666666666666664333345555566666


Q ss_pred             CcEEecCCC
Q 036729          813 LHVLNLSNN  821 (970)
Q Consensus       813 L~~l~ls~N  821 (970)
                      |+.+++++|
T Consensus       895 L~~L~l~~C  903 (1153)
T PLN03210        895 LETVDFSDC  903 (1153)
T ss_pred             CCeeecCCC
Confidence            666666655

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=1.2e-23  Score=212.99  Aligned_cols=385  Identities=21%  Similarity=0.268  Sum_probs=227.4

Q ss_pred             CCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeecc-ccCCCCCCCcccccccccEEec
Q 036729          428 TLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQ-NDLSGPIPASLGYCKRLQQIAL  506 (970)
Q Consensus       428 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~L  506 (970)
                      .-..++|..|+|+.+.+..|+.+++|+.|||++|.|+.+.|++|.++++|..|-+.+ |+|+......|..+.+++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            345667777777766667777777788888888888777777788877777766555 7777666667778888888888


Q ss_pred             cCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcccccccccc-------------CCCCCCCccc
Q 036729          507 ADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSI-------------YPLTGSNSLT  573 (970)
Q Consensus       507 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-------------~~~~~~~~L~  573 (970)
                      .-|++.......|..++++..|.+.+|.+....-..+..+..++.+.+..|.+...-             ..+.+..-..
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            888888777778888888888888888777655556777777777777777643210             0112222122


Q ss_pred             EEECCCCCCCCCCCcccccC-cCCCceeccCccccCCCC-cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccC
Q 036729          574 ALDLTNNSFSGPIPSELAMS-RNLSRLRLAHNHLTGNIP-SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN  651 (970)
Q Consensus       574 ~L~l~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~  651 (970)
                      ...+.+.++...-+..|... .++..-..+.+...+..| ..|..+++|++|+|++|+++++-+.+|.+...+++|.|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            22222222222222222111 111111122222333333 2466677777777777777776666777777777777777


Q ss_pred             CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCccc-----------------CCccccccc
Q 036729          652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK-----------------IPPEIGNLT  714 (970)
Q Consensus       652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-----------------~~~~l~~l~  714 (970)
                      |++...-...|.++..|+.|+|.+|+++...|..|..+.+|.+|++-.|.+.-.                 .|.. +.-.
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C-q~p~  386 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC-QSPG  386 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC-CCCc
Confidence            776655555666677777777777777776677777777777777666654310                 0100 0111


Q ss_pred             ccceeccCCCccc---cccchhh---------hcccCCcE-EECccccccccCchhhhhhhhhHhhhhCCCCcccccCCc
Q 036729          715 ALNVLNLQRNSLS---GNIPSTI---------QQCKKLYE-LRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP  781 (970)
Q Consensus       715 ~L~~L~L~~N~l~---~~~p~~~---------~~l~~L~~-L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~  781 (970)
                      .++.++++...+.   -..|++.         ..++-+.+ ..-|+..++ .+|..+..  .-. .+.+.+|.++ .+|.
T Consensus       387 ~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP~--d~t-elyl~gn~~~-~vp~  461 (498)
T KOG4237|consen  387 FVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIPV--DVT-ELYLDGNAIT-SVPD  461 (498)
T ss_pred             hhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCCc--hhH-HHhcccchhc-ccCH
Confidence            2334444433321   1112111         11222221 122222222 33333221  111 2777888887 6666


Q ss_pred             cccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCC
Q 036729          782 SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN  821 (970)
Q Consensus       782 ~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N  821 (970)
                      +  .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus       462 ~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  462 E--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             H--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            6  56677 8888888888777778888888888888887

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-23  Score=211.95  Aligned_cols=413  Identities=22%  Similarity=0.218  Sum_probs=208.8

Q ss_pred             CCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeeccc-ccccccCCccccCCCCCCEEEc
Q 036729          356 SLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD-NMITGKIPVEIGKLQTLSAIYL  434 (970)
Q Consensus       356 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l  434 (970)
                      .-++++|..|+|+...+.+|+.+++|+.|+|++|.|+.+-|.+|.++.+|.+|.+.+ |+++..-...|+.+..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456677777777766666677777777777777777666666666666666655544 5555443344555555555555


Q ss_pred             ccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCc
Q 036729          435 YDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGS  514 (970)
Q Consensus       435 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~  514 (970)
                      .-|++.-...+.|..++++..|.+..|.+..+-...|..+.+++.+.+..|.+..     ..+++.+..       ....
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~-------~~a~  215 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLAD-------DLAM  215 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhh-------HHhh
Confidence            5555544444444455555555555554443322344444444444444443210     011111110       0011


Q ss_pred             cCcchhcCCCCceEEccccccccCCCccccCC-CCCcEEEccccccccccC--CCCCCCcccEEECCCCCCCCCCCcccc
Q 036729          515 VPLTFRFLSELYLITLYNNSFKGPLPPSLFQL-KKLRIINFSHNKFSGSIY--PLTGSNSLTALDLTNNSFSGPIPSELA  591 (970)
Q Consensus       515 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~  591 (970)
                      .|..+++........+.+.++..+.+..+... ..+..--.+.+...+.-|  .|..+++|+.|++++|+++++-+.+|.
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence            22223333333333333333333322222111 111111111111111111  345556666666666666666666666


Q ss_pred             cCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCC-ccccccccCccce
Q 036729          592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT-IPFWLGSLQEIGE  670 (970)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~  670 (970)
                      ....++.|.|..|++...-...|.++..|+.|+|.+|+++-..|.+|....+|.+|++-.|.+... --.|++.      
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~------  369 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE------  369 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH------
Confidence            666666666666665544444556666666666666666666666666666666666655544311 0011111      


Q ss_pred             EEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc---cCCccc---------cccccccee-ccCCCccccccchhhhcc
Q 036729          671 LDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG---KIPPEI---------GNLTALNVL-NLQRNSLSGNIPSTIQQC  737 (970)
Q Consensus       671 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---~~~~~l---------~~l~~L~~L-~L~~N~l~~~~p~~~~~l  737 (970)
                       ++..+.-.|..|  -+.-..++.+.++++.+..   ..|+..         ..++.+.+. ..++..+ ..+|..+  -
T Consensus       370 -Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l-k~lp~~i--P  443 (498)
T KOG4237|consen  370 -WLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL-KLLPRGI--P  443 (498)
T ss_pred             -HHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch-hhcCCCC--C
Confidence             111112111111  1122234445555443321   112211         223333332 2333333 2333322  1


Q ss_pred             cCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC
Q 036729          738 KKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN  797 (970)
Q Consensus       738 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N  797 (970)
                      ...+++++.+|.++ .+|.+  .+..+ . +|+|+|+++-.--..|.++++|.+|-||+|
T Consensus       444 ~d~telyl~gn~~~-~vp~~--~~~~l-~-~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  444 VDVTELYLDGNAIT-SVPDE--LLRSL-L-LDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             chhHHHhcccchhc-ccCHH--HHhhh-h-cccccCceehhhcccccchhhhheeEEecC
Confidence            34578999999999 78877  66677 4 999999999777789999999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=4.7e-20  Score=214.09  Aligned_cols=266  Identities=26%  Similarity=0.364  Sum_probs=169.9

Q ss_pred             CccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcc
Q 036729          476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFS  555 (970)
Q Consensus       476 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  555 (970)
                      .-..|+++.+.++ .+|..+.  ++|+.|++.+|+++. +|.   ..                        ++|++|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp------------------------~~Lk~LdLs  250 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LP------------------------PELRTLEVS  250 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CC------------------------CCCcEEEec
Confidence            3456677777666 3455443  356666666666653 221   12                        345555555


Q ss_pred             ccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCc
Q 036729          556 HNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA  635 (970)
Q Consensus       556 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~  635 (970)
                      +|+++.. +.  ..++|+.|++++|.++. +|..   ..+|+.|++++|+++. +|.   ..++|+.|++++|++++. |
T Consensus       251 ~N~LtsL-P~--lp~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p  318 (788)
T PRK15387        251 GNQLTSL-PV--LPPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-P  318 (788)
T ss_pred             CCccCcc-cC--cccccceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-C
Confidence            5554422 21  12455566666665543 2221   2456677777777763 343   235678888888887753 3


Q ss_pred             ccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccc
Q 036729          636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTA  715 (970)
Q Consensus       636 ~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~  715 (970)
                      ..   ..+|+.|++++|.+++ +|..   ..+|++|+|++|++++ +|..   .++|+.|++++|.++. +|..   .++
T Consensus       319 ~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~  383 (788)
T PRK15387        319 AL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG  383 (788)
T ss_pred             CC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence            32   2357777888888774 3431   2468888888888884 4432   3567778888888874 4543   246


Q ss_pred             cceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCC
Q 036729          716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNIS  795 (970)
Q Consensus       716 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls  795 (970)
                      |+.|++++|++++ +|..   .++|+.|++++|++++ +|...   ..|.. |++++|.++ .+|..+.++++|+.|+|+
T Consensus       384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~-L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLS-LSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhh-hhhccCccc-ccChHHhhccCCCeEECC
Confidence            8888888888875 4432   3568888999998884 66543   34566 888999988 688888888899999999


Q ss_pred             CCcCccccCcccCC
Q 036729          796 YNQLQGQVPASLGK  809 (970)
Q Consensus       796 ~N~l~~~~p~~l~~  809 (970)
                      +|+|+|.+|..+..
T Consensus       454 ~N~Ls~~~~~~L~~  467 (788)
T PRK15387        454 GNPLSERTLQALRE  467 (788)
T ss_pred             CCCCCchHHHHHHH
Confidence            99998888877643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=3.9e-20  Score=214.79  Aligned_cols=263  Identities=25%  Similarity=0.300  Sum_probs=202.5

Q ss_pred             CceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCc
Q 036729          525 LYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHN  604 (970)
Q Consensus       525 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n  604 (970)
                      -..|+++.+.++ .+|..+.  .+|+.|++++|+++. ++.  ..++|++|++++|+++.. |..   .++|+.|++++|
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSN  272 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccCcc-cCc---ccccceeeccCC
Confidence            445666666666 3454443  367888888888875 332  257899999999999854 532   468999999999


Q ss_pred             cccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCC
Q 036729          605 HLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA  684 (970)
Q Consensus       605 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  684 (970)
                      .++. +|..   .++|+.|++++|+++. +|..   .++|+.|++++|++++. |..   ..+|+.|++++|++++ +|.
T Consensus       273 ~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~  339 (788)
T PRK15387        273 PLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPT  339 (788)
T ss_pred             chhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCccccC-CCC---cccccccccccCcccc-ccc
Confidence            9874 4443   3578899999999985 4432   46899999999999864 432   2468899999999985 553


Q ss_pred             CCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhh
Q 036729          685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTEL  764 (970)
Q Consensus       685 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  764 (970)
                      .   ..+|++|++++|++++ +|..   .++|+.|++++|+++. +|..   ..+|+.|++++|++++ +|...   ..|
T Consensus       340 l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s~L  404 (788)
T PRK15387        340 L---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---SEL  404 (788)
T ss_pred             c---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---cCC
Confidence            2   2589999999999995 4543   2578889999999985 5543   3579999999999994 66543   456


Q ss_pred             HhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCccc
Q 036729          765 QVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF  831 (970)
Q Consensus       765 ~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~  831 (970)
                      +. |++++|.+++ +|...   .+|+.|++++|+|+ .+|..+..++.|+.+++++|+|+|.+|..+
T Consensus       405 ~~-LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        405 KE-LMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CE-EEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            66 9999999995 77543   46889999999998 789999999999999999999999988554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=1.4e-18  Score=203.61  Aligned_cols=312  Identities=24%  Similarity=0.364  Sum_probs=150.8

Q ss_pred             CChHHHHHHHHHHhhCCCCCCCCC----CCCCCCCCCCccc----------------eEecCCCCCEEEEECCCCCCccc
Q 036729           22 GISTDSFWLLRIKQELVDPTGILE----NWSARAHMCSWHG----------------VTCSDDQKHVVGLNLSSSGLSGS   81 (970)
Q Consensus        22 ~~~~~~~~l~~~~~~~~~~~~~~~----~w~~~~~~c~w~g----------------v~c~~~~~~v~~L~L~~~~l~~~   81 (970)
                      ..+.+...+++..+.+..|. ...    .|.+.++.|.-..                |.|.  .+.||.+...+......
T Consensus        60 ~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~~  136 (754)
T PRK15370         60 ASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQASS  136 (754)
T ss_pred             CCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccccc
Confidence            34567788999988887762 344    4998899997544                5664  45677776654322111


Q ss_pred             ccc--C--------------------------c-----cCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcC
Q 036729           82 ISR--D--------------------------F-----LNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSG  128 (970)
Q Consensus        82 ~~~--~--------------------------l-----~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~  128 (970)
                      ...  .                          +     +-..+...|++++++++ .+|..+.  ++|+.|+|++|.++ 
T Consensus       137 ~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-  212 (754)
T PRK15370        137 ASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-  212 (754)
T ss_pred             CCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-
Confidence            100  0                          0     01123455666665555 2444332  35666666666655 


Q ss_pred             CCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccC
Q 036729          129 KIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHG  208 (970)
Q Consensus       129 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  208 (970)
                      .+|..+.  .+|++|++++|.+. .+|..+.  .+|+.|++++|++. .+|..+.  .+|++|++++|+++.        
T Consensus       213 sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~--------  276 (754)
T PRK15370        213 SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC--------  276 (754)
T ss_pred             cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc--------
Confidence            4454332  35666666665554 3443332  24555555555554 3443332  245555555555543        


Q ss_pred             CcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEE
Q 036729          209 CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELD  288 (970)
Q Consensus       209 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  288 (970)
                                       +|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|..+  .++|+.|+
T Consensus       277 -----------------LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~  331 (754)
T PRK15370        277 -----------------LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLE  331 (754)
T ss_pred             -----------------cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceecc
Confidence                             333221  244444444444442 222221  234444455544442 22221  13455555


Q ss_pred             CcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCC
Q 036729          289 LSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFK  368 (970)
Q Consensus       289 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  368 (970)
                      +++|.+++ +|..+.  ++|+.|++++|.++ .+|..+   .++|+.|++++|.++. +|..+.  ..|+.|++++|++.
T Consensus       332 Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        332 AGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             ccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc
Confidence            55555443 222221  35555555555554 344332   2355555555555553 222221  24555666666555


Q ss_pred             CCCCccc----ccccccccccCCccccc
Q 036729          369 GELPRSL----DKLEELTDLLLNNNSFT  392 (970)
Q Consensus       369 ~~~~~~l----~~l~~L~~L~L~~n~l~  392 (970)
                       .+|..+    ..++.+..+++.+|+++
T Consensus       402 -~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        402 -RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             333322    22355556666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.4e-18  Score=201.73  Aligned_cols=226  Identities=25%  Similarity=0.452  Sum_probs=147.5

Q ss_pred             CCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccC
Q 036729          548 KLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSF  627 (970)
Q Consensus       548 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  627 (970)
                      .++.|++++|.++.....+  .++|+.|++++|+++. +|..+.  .+|+.|++++|++. .+|..+.  .+|+.|++++
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        200 QITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFH  271 (754)
T ss_pred             CCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence            3444444444444221111  1355566666665553 343332  35777777777766 4555543  4677888888


Q ss_pred             CcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC
Q 036729          628 NSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP  707 (970)
Q Consensus       628 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  707 (970)
                      |+++. +|..+.  .+|+.|++++|++++ +|..+.  ++|+.|++++|+++. +|..+  .++|+.|++++|.+++ +|
T Consensus       272 N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP  341 (754)
T PRK15370        272 NKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LP  341 (754)
T ss_pred             CccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CC
Confidence            87774 555443  468888888888774 344332  467888888888874 44333  3678888888888875 55


Q ss_pred             cccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccc----
Q 036729          708 PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL----  783 (970)
Q Consensus       708 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~----  783 (970)
                      ..+.  ++|+.|++++|+++. +|..+.  +.|+.|+|++|+++ .+|..+..  .|+. |++++|+++ .+|..+    
T Consensus       342 ~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~--sL~~-LdLs~N~L~-~LP~sl~~~~  411 (754)
T PRK15370        342 ASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLPA--ALQI-MQASRNNLV-RLPESLPHFR  411 (754)
T ss_pred             hhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHHH--HHHH-HhhccCCcc-cCchhHHHHh
Confidence            5543  688888898888874 555543  57889999999988 56766543  5776 899999988 455443    


Q ss_pred             cCCCCCCEEeCCCCcCcc
Q 036729          784 GSLLKLERLNISYNQLQG  801 (970)
Q Consensus       784 ~~l~~L~~L~ls~N~l~~  801 (970)
                      +.++.+..|++.+|.++.
T Consensus       412 ~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        412 GEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             hcCCCccEEEeeCCCccH
Confidence            445788899999998873

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=5.5e-19  Score=193.88  Aligned_cols=201  Identities=25%  Similarity=0.276  Sum_probs=100.8

Q ss_pred             EECCCCCCcc-ccccCccCCCCCcEEECCCCCCCCC----CCccccCCCCCcEeecCCCcCcC------CCCcCCCCCCC
Q 036729           71 LNLSSSGLSG-SISRDFLNLTSLETLDLSSNSLTGL----IPSELGQLQNLRILLLYSNSFSG------KIPPEIGFLNK  139 (970)
Q Consensus        71 L~L~~~~l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~------~~p~~l~~l~~  139 (970)
                      |+|.++.+++ .....+..++.|++|+++++.+++.    ++..+...+.|++|+++++.+.+      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            4555555552 2334445566677777777766432    44455566667777777666542      12334455666


Q ss_pred             CcEEEccCccCCccCCccccCCcc---cchhhcccccccc----CCCccccCC-ceeeEEEcCCCcCCCCC----ccccc
Q 036729          140 LQVLRIGDNLLWGEIPPHIGNLTE---LRELAIAYCQLNG----SIPVEIGNL-KHLTSLDLQMNKLSGLI----PEAIH  207 (970)
Q Consensus       140 L~~L~L~~n~~~~~~p~~l~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~L~Ls~n~i~~~~----~~~l~  207 (970)
                      |++|++++|.+.+..+..+..+.+   |++|++++|.+.+    .+...+..+ ++|++|++++|.+++..    +..+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            666666666665444444444433   6666666655542    122234444 56666666666655322    22334


Q ss_pred             CCcccccccccccccCCC----CcccccCCCCCcEEEccCCcCccc----cCccccCCCCCCEEEccCcccc
Q 036729          208 GCEELQKFAASNNMLEGT----IPSSIVLLKSLQILNLANNSLSGS----IPVELSHLFNLRYLNLLGNIFD  271 (970)
Q Consensus       208 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~  271 (970)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    +...+..+++|++|++++|.+.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            444555555555554431    122233334555555555544322    1122333444444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=1.5e-18  Score=190.48  Aligned_cols=258  Identities=27%  Similarity=0.281  Sum_probs=139.7

Q ss_pred             EEECCCCCCC-CCCCccccCCCCCcEeecCCCcCcCC----CCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhh
Q 036729           94 TLDLSSNSLT-GLIPSELGQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELA  168 (970)
Q Consensus        94 ~L~Ls~n~~~-~~~p~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  168 (970)
                      .|+|..+.++ ...+..+..+.+|++|+++++.++..    ++..+...+.|++|+++++.+.+ .+..+          
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence            5778888887 34566677788899999999887543    45556667778888888776542 01100          


Q ss_pred             ccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcc---cccccccccccCC----CCcccccCC-CCCcEEE
Q 036729          169 IAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE---LQKFAASNNMLEG----TIPSSIVLL-KSLQILN  240 (970)
Q Consensus       169 L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~  240 (970)
                             ..++..+.++++|++|++++|.+.+..+..+..+.+   |++|++++|.+++    .+...+..+ ++|+.|+
T Consensus        71 -------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~  143 (319)
T cd00116          71 -------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV  143 (319)
T ss_pred             -------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence                   112223344445555555555444433333333332   5555555554442    112233344 5666666


Q ss_pred             ccCCcCccc----cCccccCCCCCCEEEccCcccccc----CCccccCCCCccEEECcCCcCccc----cccccCCCCCc
Q 036729          241 LANNSLSGS----IPVELSHLFNLRYLNLLGNIFDGE----IPSELNKLAQLEELDLSKNNLSGS----ISLLNTQLKNL  308 (970)
Q Consensus       241 L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L  308 (970)
                      +++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+++.    +...+..+++|
T Consensus       144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L  223 (319)
T cd00116         144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL  223 (319)
T ss_pred             cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence            666666532    222344555666666666666532    222344455667777766666533    22334556667


Q ss_pred             cEEEccCCcccCCCchhhhcC----CCCCcEEEccCCcCCC----CCccccccCCCCCEEeCCCCcCCC
Q 036729          309 ETLVLSDNAFTGSIPIKFCLN----NSSLQQLILARNKLSG----EFPLELLRCSSLQQLDLSDNSFKG  369 (970)
Q Consensus       309 ~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~Ls~n~l~~  369 (970)
                      ++|++++|.+++.....+...    .+.|++|++++|.++.    .+...+..+++|+++++++|.+..
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            777777776654333222221    2566666666665542    122333445566666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=1.2e-18  Score=156.36  Aligned_cols=164  Identities=34%  Similarity=0.553  Sum_probs=105.6

Q ss_pred             cCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceE
Q 036729          592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGEL  671 (970)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  671 (970)
                      +++..+.|.+++|+++ .+|..+..+.+|+.|++++|++. ..|.+++.++.|+.|+++-|++. ..|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            3455566666666666 44556667777777777777766 45666777777777777777665 556677777777777


Q ss_pred             EcccCcCcC-CCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccc
Q 036729          672 DLSSNNFNG-TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFF  750 (970)
Q Consensus       672 ~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  750 (970)
                      ||..|++.. ..|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|++++|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            777776653 45666666666666777776665 55666666666666666666654 4455566666666666666666


Q ss_pred             cccCchhhhhh
Q 036729          751 TGSIPADLGRL  761 (970)
Q Consensus       751 ~~~ip~~l~~l  761 (970)
                      + .+|++++++
T Consensus       186 ~-vlppel~~l  195 (264)
T KOG0617|consen  186 T-VLPPELANL  195 (264)
T ss_pred             e-ecChhhhhh
Confidence            5 455555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=5.3e-17  Score=145.82  Aligned_cols=165  Identities=29%  Similarity=0.477  Sum_probs=134.1

Q ss_pred             cccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcce
Q 036729          614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL  693 (970)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  693 (970)
                      +.++...+.|.+|+|+++ .+|+.+..+.+|+.|++.+|++. ..|..+++++.|+.|+++-|++. ..|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445667788889999988 56677888899999999999887 55777888899999999888887 7788888899999


Q ss_pred             EEEccCCcCcc-cCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCC
Q 036729          694 KLSLRGNNLSG-KIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSK  772 (970)
Q Consensus       694 ~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~  772 (970)
                      .||+.+|++.. ..|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- .+|.+++.++.|+. |.+.+
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre-lhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE-LHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH-Hhccc
Confidence            99998888874 45777888888888888888886 56677888888888888888877 67888888888887 88888


Q ss_pred             CcccccCCccccC
Q 036729          773 NNFSGEIPPSLGS  785 (970)
Q Consensus       773 N~l~g~ip~~~~~  785 (970)
                      |+++ .+|+.+++
T Consensus       183 nrl~-vlppel~~  194 (264)
T KOG0617|consen  183 NRLT-VLPPELAN  194 (264)
T ss_pred             ceee-ecChhhhh
Confidence            8887 56666554

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=9.7e-15  Score=171.44  Aligned_cols=151  Identities=30%  Similarity=0.517  Sum_probs=121.7

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCC----CccceEecCC--C--CCEEEEECCCCCCccccccCccCCCC
Q 036729           20 LGGISTDSFWLLRIKQELVDPTGILENWSARAHMC----SWHGVTCSDD--Q--KHVVGLNLSSSGLSGSISRDFLNLTS   91 (970)
Q Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~--~--~~v~~L~L~~~~l~~~~~~~l~~l~~   91 (970)
                      ....+.|..||+++|+++.++..  .+|.+ .+||    .|.||.|...  .  .+|+.|+|+++.+.|.+|..+..+++
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~  443 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH  443 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence            34567899999999999876532  47964 2332    7999999532  2  25899999999999999999999999


Q ss_pred             CcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCC-cccchhhcc
Q 036729           92 LETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNL-TELRELAIA  170 (970)
Q Consensus        92 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l-~~L~~L~L~  170 (970)
                      |+.|+|++|.+.|.+|..++.+++|++|+|++|.++|.+|..++.+++|++|+|++|.+.+.+|..++.+ .++..+++.
T Consensus       444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence            9999999999999999999999999999999999999999999999999999999998888888777643 234444444


Q ss_pred             ccc
Q 036729          171 YCQ  173 (970)
Q Consensus       171 ~~~  173 (970)
                      +|.
T Consensus       524 ~N~  526 (623)
T PLN03150        524 DNA  526 (623)
T ss_pred             CCc
Confidence            443

>PLN03150 hypothetical protein; Provisional

Probab=99.53  E-value=1.5e-14  Score=169.96  Aligned_cols=114  Identities=46%  Similarity=0.794  Sum_probs=66.4

Q ss_pred             CcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecC
Q 036729          740 LYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLS  819 (970)
Q Consensus       740 L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls  819 (970)
                      ++.|+|++|.++|.+|..++.++.|+. |+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++.+++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~-L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQS-INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCE-EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            344555555555555555555555555 5555555555566556666666666666666666666666666666666666


Q ss_pred             CCcccccCCccccCC----CCcccCCCCCCCCCC-CCCCC
Q 036729          820 NNHLQGQLPLTFSGF----PLSSFLGNAKLCGPP-LLSCS  854 (970)
Q Consensus       820 ~N~l~g~~p~~~~~~----~~~~~~~n~~lc~~~-~~~c~  854 (970)
                      +|+++|.+|..+...    ....+.+|+.+|+.| ...|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            666666666433221    123467788888865 35674

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=2.4e-12  Score=137.68  Aligned_cols=196  Identities=31%  Similarity=0.478  Sum_probs=143.3

Q ss_pred             cCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEE
Q 036729          616 KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL  695 (970)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  695 (970)
                      .+..-...|++.|++. .+|..+..+..|+.+.+.+|.+. .+|..+.++..|+++||+.|+++ ..|..++.|+ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            4555567888999888 57777888888888888888887 67888888888899999998888 5566666654 7888


Q ss_pred             EccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcc
Q 036729          696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNF  775 (970)
Q Consensus       696 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l  775 (970)
                      -+++|+++ .+|+.++.+..|..||.+.|.+. .+|..+..+.+|+.|.+..|++. .+|.++..|+ |.. ||+|+|++
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~-lDfScNki  223 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIR-LDFSCNKI  223 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eee-eecccCce
Confidence            88888887 66777777778888888888876 45566777777777777777776 5666776444 444 77777777


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCccccCccc---CCCCcCcEEecCCCc
Q 036729          776 SGEIPPSLGSLLKLERLNISYNQLQGQVPASL---GKLTSLHVLNLSNNH  822 (970)
Q Consensus       776 ~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l---~~l~~L~~l~ls~N~  822 (970)
                      + .||-.|..|+.|++|-|.+|.|.. .|..+   +...-.++|+...+.
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            7 677777777777777777777763 23332   233445666666553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=2e-12  Score=138.20  Aligned_cols=195  Identities=28%  Similarity=0.418  Sum_probs=160.1

Q ss_pred             CcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729          593 SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD  672 (970)
Q Consensus       593 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  672 (970)
                      +..-...|++.|++. ++|..++.+..|+.+.+..|.+. .+|..+.++..|+.++|+.|+++ ..|..+..|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            344567889999887 78888998999999999999988 67888999999999999999988 5566677666 88999


Q ss_pred             cccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc
Q 036729          673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG  752 (970)
Q Consensus       673 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  752 (970)
                      +++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++... |+.+..+ .|..||+|.|+++ 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCcee-
Confidence            9999998 67778888899999999999987 6777889999999999999998744 5555544 4889999999998 


Q ss_pred             cCchhhhhhhhhHhhhhCCCCcccccCCccc---cCCCCCCEEeCCCCc
Q 036729          753 SIPADLGRLTELQVILDLSKNNFSGEIPPSL---GSLLKLERLNISYNQ  798 (970)
Q Consensus       753 ~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~---~~l~~L~~L~ls~N~  798 (970)
                      .||-.|..++.|++ |-|.+|.+. ..|..+   |...--++|+...++
T Consensus       225 ~iPv~fr~m~~Lq~-l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQV-LQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ecchhhhhhhhhee-eeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            89999999999998 999999998 444433   344455677777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.4e-10  Score=130.81  Aligned_cols=204  Identities=32%  Similarity=0.488  Sum_probs=144.5

Q ss_pred             EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCc-CCCceeccCccccCCCCcccccCCCCcEEEccCCc
Q 036729          551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSR-NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS  629 (970)
Q Consensus       551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  629 (970)
                      .++.+.+.+..........+.++.|++.+|.++. ++....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            4555555554444444445667777777777764 344444553 7888888888877 445667888888888888888


Q ss_pred             CccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcc
Q 036729          630 FTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPE  709 (970)
Q Consensus       630 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  709 (970)
                      ++. +|......+.|+.|++++|++.. +|........|+++++++|+.. ..+..+.++.++..+.+.+|++.. .+..
T Consensus       175 l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~  250 (394)
T COG4886         175 LSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES  250 (394)
T ss_pred             hhh-hhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence            884 44444467888888888888874 4544455566888888888644 345567788888888888888763 2566


Q ss_pred             cccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhh
Q 036729          710 IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT  762 (970)
Q Consensus       710 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  762 (970)
                      ++.++++++|++++|+++...+  +..+.+++.|++++|.++..+|.......
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~~~  301 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLL  301 (394)
T ss_pred             hccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhccch
Confidence            7788889999999998875544  77888899999999988877776554433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1.5e-11  Score=124.56  Aligned_cols=232  Identities=23%  Similarity=0.280  Sum_probs=117.9

Q ss_pred             CCEEEEECCCCCCccc----cccCccCCCCCcEEECCCCCCCC----CCCcc-------ccCCCCCcEeecCCCcCcCCC
Q 036729           66 KHVVGLNLSSSGLSGS----ISRDFLNLTSLETLDLSSNSLTG----LIPSE-------LGQLQNLRILLLYSNSFSGKI  130 (970)
Q Consensus        66 ~~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~----~~p~~-------l~~l~~L~~L~Ls~n~~~~~~  130 (970)
                      ..+++|+|++|.+.-.    +.+.+.+.+.|+..++|.- ++|    .+|+.       +-.+++|++||||.|.|.-..
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            4567777777766432    3345556666666666642 222    23332       334445555555555544322


Q ss_pred             CcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCC-------------CccccCCceeeEEEcCCCc
Q 036729          131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSI-------------PVEIGNLKHLTSLDLQMNK  197 (970)
Q Consensus       131 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~-------------p~~l~~l~~L~~L~Ls~n~  197 (970)
                      +..+.                    ..+..++.|++|.|.+|.+...-             ....+.-+.|+++....|+
T Consensus       109 ~~~l~--------------------~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen  109 IRGLE--------------------ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hHHHH--------------------HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            22111                    12334556666666666543110             1123344677888887777


Q ss_pred             CCCCCc----ccccCCcccccccccccccCCC----CcccccCCCCCcEEEccCCcCcccc----CccccCCCCCCEEEc
Q 036729          198 LSGLIP----EAIHGCEELQKFAASNNMLEGT----IPSSIVLLKSLQILNLANNSLSGSI----PVELSHLFNLRYLNL  265 (970)
Q Consensus       198 i~~~~~----~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L  265 (970)
                      +.....    ..|...+.|+.+.+..|.+...    +..++..++.|++|||..|.++...    ...+..+++|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            665432    3355566777777776665421    1234456666666666666665322    223444556666666


Q ss_pred             cCccccccCCccc-----cCCCCccEEECcCCcCccc----cccccCCCCCccEEEccCCcc
Q 036729          266 LGNIFDGEIPSEL-----NKLAQLEELDLSKNNLSGS----ISLLNTQLKNLETLVLSDNAF  318 (970)
Q Consensus       266 ~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  318 (970)
                      ++|.+......+|     ...+.|++|++.+|.++..    +.......+.|+.|+|++|.+
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6666554433322     1245566666665555422    111223345555555555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.8e-10  Score=129.99  Aligned_cols=196  Identities=39%  Similarity=0.547  Sum_probs=95.5

Q ss_pred             eeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcC-cccEEEccCCcccCCccccccccCccceEEcccCc
Q 036729          599 LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCA-KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN  677 (970)
Q Consensus       599 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  677 (970)
                      ++++.|.+... +..+..++.++.|++.+|.++. ++....... +|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus        98 l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            44444444221 1223333455555555555553 233333332 4555555555554 222334445555555555555


Q ss_pred             CcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchh
Q 036729          678 FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD  757 (970)
Q Consensus       678 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~  757 (970)
                      ++. +|...+..+.                        |+.|++++|++. .+|........|+++++++|++. .++..
T Consensus       175 l~~-l~~~~~~~~~------------------------L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~  227 (394)
T COG4886         175 LSD-LPKLLSNLSN------------------------LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS  227 (394)
T ss_pred             hhh-hhhhhhhhhh------------------------hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh
Confidence            542 2222224444                        444455554443 22222233333555555555322 34444


Q ss_pred             hhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          758 LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       758 l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +..+..+.. +.+++|.+.. ++..++.++.++.|++++|+++..-+  +..+..++.|++++|.++...|
T Consensus       228 ~~~~~~l~~-l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         228 LSNLKNLSG-LELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhhcccccc-cccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            555555554 5555555542 24556666666667777666664333  6666667777777776666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=2.3e-11  Score=123.20  Aligned_cols=163  Identities=21%  Similarity=0.204  Sum_probs=87.1

Q ss_pred             ccCCceeeEEEcCCCcCCCCCccc----ccCCcccccccccccccCCCCcc-------------cccCCCCCcEEEccCC
Q 036729          182 IGNLKHLTSLDLQMNKLSGLIPEA----IHGCEELQKFAASNNMLEGTIPS-------------SIVLLKSLQILNLANN  244 (970)
Q Consensus       182 l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n  244 (970)
                      +...++|++||||.|-+....+..    +..+..|++|+|.+|.+.-..-.             ....-+.|+++....|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            334445566666666554433332    34566777777777765422111             1233456777777777


Q ss_pred             cCcccc----CccccCCCCCCEEEccCccccccCC----ccccCCCCccEEECcCCcCccc----cccccCCCCCccEEE
Q 036729          245 SLSGSI----PVELSHLFNLRYLNLLGNIFDGEIP----SELNKLAQLEELDLSKNNLSGS----ISLLNTQLKNLETLV  312 (970)
Q Consensus       245 ~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~  312 (970)
                      ++....    ...|...+.|+.+.++.|.+....-    ..|..+++|++|||.+|-++..    +...+..+++|+.++
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            664321    1234455667777777766543222    3455667777777777766533    223445566677777


Q ss_pred             ccCCcccCCCchhhh----cCCCCCcEEEccCCcCC
Q 036729          313 LSDNAFTGSIPIKFC----LNNSSLQQLILARNKLS  344 (970)
Q Consensus       313 L~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~  344 (970)
                      +++|.+...-...+.    ...|+|+.+.+.+|.++
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            777666543333222    23445555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.99  E-value=3.6e-10  Score=135.54  Aligned_cols=84  Identities=33%  Similarity=0.400  Sum_probs=39.2

Q ss_pred             ccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceee
Q 036729          110 LGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLT  189 (970)
Q Consensus       110 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~  189 (970)
                      |..++.|++|||++|.--+.+|.+++.|-+||+|+++++.+. .+|..+++++.|.+|++..+.....+|.....|++|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            444555555555544433445555555555555555544442 4444444444455554444443333333333444444


Q ss_pred             EEEcC
Q 036729          190 SLDLQ  194 (970)
Q Consensus       190 ~L~Ls  194 (970)
                      +|.+.
T Consensus       646 ~L~l~  650 (889)
T KOG4658|consen  646 VLRLP  650 (889)
T ss_pred             EEEee
Confidence            44443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.5e-10  Score=120.54  Aligned_cols=111  Identities=32%  Similarity=0.290  Sum_probs=58.7

Q ss_pred             cCCCCCcEEEccCCcCccccC-ccccCCCCCCEEEccCccccccCC--ccccCCCCccEEECcCCcCcccccccc-CCCC
Q 036729          231 VLLKSLQILNLANNSLSGSIP-VELSHLFNLRYLNLLGNIFDGEIP--SELNKLAQLEELDLSKNNLSGSISLLN-TQLK  306 (970)
Q Consensus       231 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~  306 (970)
                      .++.+|++..|.++....... .....|++++.|||+.|-+....+  .-...+++|+.|+++.|.+........ ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            466778888888877652211 245567777777777776654221  233456677777777666543222111 2344


Q ss_pred             CccEEEccCCcccCCCchhhhcCCCCCcEEEccCC
Q 036729          307 NLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN  341 (970)
Q Consensus       307 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n  341 (970)
                      .|+.|.++.|.++..--.+....+|+|+.|++..|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            55555555555543222233333444444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=2.3e-10  Score=112.77  Aligned_cols=128  Identities=27%  Similarity=0.265  Sum_probs=58.2

Q ss_pred             ccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729          644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR  723 (970)
Q Consensus       644 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~  723 (970)
                      |++++|++|.++ .+..+..-+|.++.|++++|.+...-  .++.+++|+.|||++|.++.. ..+-..+-+++.|.|++
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhh
Confidence            334444444333 22233333344444444444443211  133444444444444444321 11222333444455555


Q ss_pred             CccccccchhhhcccCCcEEECccccccccC-chhhhhhhhhHhhhhCCCCccccc
Q 036729          724 NSLSGNIPSTIQQCKKLYELRLSENFFTGSI-PADLGRLTELQVILDLSKNNFSGE  778 (970)
Q Consensus       724 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~~L~ls~N~l~g~  778 (970)
                      |.+...  ..+..+-+|..||+++|++...- -..+|+++-|+. +.|.+|.+.+.
T Consensus       362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~-l~L~~NPl~~~  414 (490)
T KOG1259|consen  362 NKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET-LRLTGNPLAGS  414 (490)
T ss_pred             hhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHH-HhhcCCCcccc
Confidence            444211  12334445555555555554211 245677777777 78888888754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=6e-10  Score=133.64  Aligned_cols=204  Identities=25%  Similarity=0.334  Sum_probs=132.9

Q ss_pred             cCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCc--CcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCccc
Q 036729           87 LNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS--FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTEL  164 (970)
Q Consensus        87 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~--~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L  164 (970)
                      .+....+...+-+|.+.. ++.. ..++.|++|-+..|.  +....+..|..++.|++|||++|.-.+.+|..++.+-+|
T Consensus       520 ~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             cchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            344667777777776642 2222 234579999888886  442233347789999999999998888999999999999


Q ss_pred             chhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCccccccccccccc--CCCCcccccCCCCCcEEEcc
Q 036729          165 RELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNML--EGTIPSSIVLLKSLQILNLA  242 (970)
Q Consensus       165 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~L~  242 (970)
                      |+|+++++.+. .+|..+++++.|.+|++..+.-...+|.....+++|++|.+.....  +...-..+.++.+|+.+...
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            99999999987 8899999999999999999886666677777799999998866542  22222334455555555553


Q ss_pred             CCcCccccCccccCCCCCC----EEEccCccccccCCccccCCCCccEEECcCCcCcc
Q 036729          243 NNSLSGSIPVELSHLFNLR----YLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG  296 (970)
Q Consensus       243 ~n~l~~~~~~~l~~l~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  296 (970)
                      ....  .+-..+..++.|+    .+.+.++... ..+..+..+.+|+.|.+.++....
T Consensus       677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence            3322  1111222333333    2222222211 233445666677777776666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3.9e-10  Score=117.50  Aligned_cols=110  Identities=25%  Similarity=0.258  Sum_probs=66.0

Q ss_pred             CCcccccccccccccCCCCc-ccccCCCCCcEEEccCCcCccccC--ccccCCCCCCEEEccCccccccCCcc-ccCCCC
Q 036729          208 GCEELQKFAASNNMLEGTIP-SSIVLLKSLQILNLANNSLSGSIP--VELSHLFNLRYLNLLGNIFDGEIPSE-LNKLAQ  283 (970)
Q Consensus       208 ~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~  283 (970)
                      ++.+|++..+.++....... +....+++++.|||+.|-+....+  .....+++|+.|+++.|.+.....+. -..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            55667777777666542211 244567777777777776654322  22456777777777777765432221 124667


Q ss_pred             ccEEECcCCcCccc-cccccCCCCCccEEEccCCc
Q 036729          284 LEELDLSKNNLSGS-ISLLNTQLKNLETLVLSDNA  317 (970)
Q Consensus       284 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~  317 (970)
                      |+.|.|+.|.++.. +......+|+|+.|++.+|.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            77777777776632 22233456777777777774

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=9e-10  Score=108.70  Aligned_cols=128  Identities=31%  Similarity=0.345  Sum_probs=71.0

Q ss_pred             eeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEcc
Q 036729          187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLL  266 (970)
Q Consensus       187 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  266 (970)
                      .|+++|||+|.|+.+ .++..-.|.++.|+++.|.+...  +.+..+++|+.|||++|.++ .+..+-.++-+++.|.|+
T Consensus       285 ~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            344444444444321 22333334444444444444322  22555666666666666665 333344456667777777


Q ss_pred             CccccccCCccccCCCCccEEECcCCcCccccc-cccCCCCCccEEEccCCcccC
Q 036729          267 GNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS-LLNTQLKNLETLVLSDNAFTG  320 (970)
Q Consensus       267 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  320 (970)
                      +|.+...  +.++.+-+|..||+++|++..... ..++++|.|+.+.+.+|.+.+
T Consensus       361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7766532  345666677777777777654322 345677777777777777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.79  E-value=3.3e-09  Score=101.61  Aligned_cols=108  Identities=31%  Similarity=0.343  Sum_probs=30.3

Q ss_pred             cCcCCCceeccCccccCCCCcccc-cCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccce
Q 036729          592 MSRNLSRLRLAHNHLTGNIPSEFG-KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGE  670 (970)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  670 (970)
                      ++..++.|+|.+|.++..  +.++ .+.+|+.||+++|.++..  +.+..++.|++|++++|+++...+.....+++|++
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            334556666666665532  2333 356667777777776643  23556667777777777776432221234667777


Q ss_pred             EEcccCcCcCCCC-CCCCCCCcceEEEccCCcCc
Q 036729          671 LDLSSNNFNGTVP-AEIGNCSKLLKLSLRGNNLS  703 (970)
Q Consensus       671 L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~  703 (970)
                      |++++|++...-. ..+..+++|+.|++.+|++.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            7777777654221 23445666666666666655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.79  E-value=4.4e-09  Score=100.75  Aligned_cols=83  Identities=28%  Similarity=0.364  Sum_probs=14.8

Q ss_pred             CCcccccccccccccCCCCccccc-CCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccc-cCCCCcc
Q 036729          208 GCEELQKFAASNNMLEGTIPSSIV-LLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSEL-NKLAQLE  285 (970)
Q Consensus       208 ~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~  285 (970)
                      +..++++|++.+|.++..  +.++ .+.+|+.|++++|.++..  ..+..+++|+.|++++|.++...+ .+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCC
Confidence            334455555555555421  2233 344555555555555422  124444455555555554443211 22 2344444


Q ss_pred             EEECcCCcCc
Q 036729          286 ELDLSKNNLS  295 (970)
Q Consensus       286 ~L~L~~n~l~  295 (970)
                      +|++++|++.
T Consensus        92 ~L~L~~N~I~  101 (175)
T PF14580_consen   92 ELYLSNNKIS  101 (175)
T ss_dssp             EEE-TTS---
T ss_pred             EEECcCCcCC
Confidence            4444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.79  E-value=6.6e-10  Score=125.33  Aligned_cols=196  Identities=31%  Similarity=0.302  Sum_probs=91.6

Q ss_pred             ccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceE
Q 036729          615 GKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLK  694 (970)
Q Consensus       615 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  694 (970)
                      ..+++|..|++.+|.+..+.. .+..+.+|++|++++|.|+...+  +..++.|+.|++++|.+...  ..+..+..|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhc
Confidence            334444444444444442211 13334444444444444443322  33344455555555555422  12333455555


Q ss_pred             EEccCCcCcccCC-cccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhh--hhHhhhhCC
Q 036729          695 LSLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT--ELQVILDLS  771 (970)
Q Consensus       695 L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~~L~ls  771 (970)
                      +++++|.+...-+ . ...+.+++.+++.+|.+....  .+..+..+..+++..|.++-.-+  +..+.  .|+. ++++
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~-l~l~  240 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRE-LYLS  240 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccC--cccchhHHHHH-Hhcc
Confidence            5555555543322 1 344555555555555553221  22223333344555555542211  11111  2555 6677


Q ss_pred             CCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729          772 KNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ  824 (970)
Q Consensus       772 ~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  824 (970)
                      +|++. .++..+..+..+..||+++|+++..-  .+.....+..+....|.+.
T Consensus       241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  241 GNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence            77766 33344556667777777777665432  2334455556666666655

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.72  E-value=1.5e-08  Score=72.35  Aligned_cols=39  Identities=41%  Similarity=0.913  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHhhCCC-CCCCCCCCCCC--CCCCCccceEec
Q 036729           24 STDSFWLLRIKQELVD-PTGILENWSAR--AHMCSWHGVTCS   62 (970)
Q Consensus        24 ~~~~~~l~~~~~~~~~-~~~~~~~w~~~--~~~c~w~gv~c~   62 (970)
                      ++|++||++||+++.. |.+.+.+|...  ++||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            5799999999999985 77889999765  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=3.3e-09  Score=119.72  Aligned_cols=197  Identities=30%  Similarity=0.343  Sum_probs=114.4

Q ss_pred             CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEE
Q 036729          617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS  696 (970)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  696 (970)
                      +..++.+++..|.+.. +-..+..+++|+.|++.+|++..... .+..+++|++|++++|.++...+  +..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhhe
Confidence            3444444555555543 22235556677777777777764422 25566777777777777765543  55566677777


Q ss_pred             ccCCcCcccCCcccccccccceeccCCCccccccc-hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcc
Q 036729          697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP-STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNF  775 (970)
Q Consensus       697 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l  775 (970)
                      +++|.++..  ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+..  ...+..+..+.. +++..|.+
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~-~~l~~n~i  220 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVL-LSLLDNKI  220 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHH-hhcccccc
Confidence            777777643  345556677777777777665444 2 4556667777777776652  223333444444 56667766


Q ss_pred             cccCCccccCCCC--CCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729          776 SGEIPPSLGSLLK--LERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ  826 (970)
Q Consensus       776 ~g~ip~~~~~l~~--L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~  826 (970)
                      +-.-+  +..+..  |+.+++++|.+.- +|..+..+..+..++++.|.+...
T Consensus       221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc
Confidence            63221  122222  6777777777653 224455566667777777766544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=3.5e-08  Score=77.44  Aligned_cols=55  Identities=35%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             ceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729          669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR  723 (970)
Q Consensus       669 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~  723 (970)
                      ++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++
T Consensus         4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred             cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence            3333333333333333333333333333333333333333333333333333333

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.58  E-value=4.3e-08  Score=76.92  Aligned_cols=59  Identities=39%  Similarity=0.475  Sum_probs=32.9

Q ss_pred             cccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCc
Q 036729          643 KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN  701 (970)
Q Consensus       643 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  701 (970)
                      +|++|++++|+++...+.+|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554444455555555555555555555555555556666666665554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=5.6e-09  Score=103.35  Aligned_cols=179  Identities=23%  Similarity=0.216  Sum_probs=86.4

Q ss_pred             CCcEEECCCCCCCCC-CCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCcc--CCccccCCcccchh
Q 036729           91 SLETLDLSSNSLTGL-IPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGE--IPPHIGNLTELREL  167 (970)
Q Consensus        91 ~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L  167 (970)
                      .|++||||...++-. +-..+..|.+|+.|.|.++.+.+.+-..+++-.+|+.|+++.+.-..+  ..-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666555421 222355666666666666666666666666666666666666542111  11224456666666


Q ss_pred             hccccccccCCCc-cccC-CceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCc
Q 036729          168 AIAYCQLNGSIPV-EIGN-LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS  245 (970)
Q Consensus       168 ~L~~~~~~~~~p~-~l~~-l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  245 (970)
                      +++.|.+....-. .+.. -++|+.|+|+++.-.-                     ....+..-...+++|.+|||+.|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl---------------------~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL---------------------QKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh---------------------hhhHHHHHHHhCCceeeecccccc
Confidence            6666654422211 1111 1234444444432100                     000111112345555566665542


Q ss_pred             -CccccCccccCCCCCCEEEccCccccccCCc---cccCCCCccEEECcCC
Q 036729          246 -LSGSIPVELSHLFNLRYLNLLGNIFDGEIPS---ELNKLAQLEELDLSKN  292 (970)
Q Consensus       246 -l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~L~~n  292 (970)
                       ++...-..|.+++.|++|.++.|..  .+|.   .+...+.|.+||+.++
T Consensus       325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence             2222223345556666666666542  2332   2455566666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=9.9e-09  Score=101.62  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=15.5

Q ss_pred             CCcccchhhccccccccCCCccccCCceeeEEEcCC
Q 036729          160 NLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQM  195 (970)
Q Consensus       160 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~  195 (970)
                      .|.+|+.|.+.++++...+...+++-.+|+.|+++.
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             HHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            344444444444444444434444444444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.23  E-value=1.7e-08  Score=111.48  Aligned_cols=19  Identities=26%  Similarity=0.621  Sum_probs=9.6

Q ss_pred             cccCCCCCcEEEccccccc
Q 036729          542 SLFQLKKLRIINFSHNKFS  560 (970)
Q Consensus       542 ~~~~l~~L~~L~ls~n~l~  560 (970)
                      .+..+.+|+.|.+.++.+.
T Consensus       104 ~ifpF~sLr~LElrg~~L~  122 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLS  122 (1096)
T ss_pred             eeccccceeeEEecCcchh
Confidence            3444555555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.18  E-value=1.2e-07  Score=83.07  Aligned_cols=115  Identities=19%  Similarity=0.262  Sum_probs=60.6

Q ss_pred             ccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeC
Q 036729          715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNI  794 (970)
Q Consensus       715 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~l  794 (970)
                      .|+..+|++|.+....+..-...+.++.+++++|.++ .+|.++..++.|+. +|++.|.+. ..|.-+..|.++-.||.
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~-lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS-LNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh-cccccCccc-cchHHHHHHHhHHHhcC
Confidence            3444455555555433333333445556666666665 55655666666665 666666665 33444445666666666


Q ss_pred             CCCcCccccCcccCCCCcCcEEecCCCcccccCCccccC
Q 036729          795 SYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSG  833 (970)
Q Consensus       795 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~~~  833 (970)
                      -+|.+- +||..+---+.....++.++++.+.+|...+.
T Consensus       131 ~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa  168 (177)
T KOG4579|consen  131 PENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA  168 (177)
T ss_pred             CCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence            666554 33333221122233445677777777744433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=2.5e-07  Score=102.48  Aligned_cols=125  Identities=31%  Similarity=0.313  Sum_probs=61.3

Q ss_pred             ccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729          644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR  723 (970)
Q Consensus       644 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~  723 (970)
                      |.+.+.++|.+. ....++.-++.|+.|+|++|++....  .+..|++|+.|||++|.+....--....+. |+.|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            445555555554 33444555555666666666655332  345555666666666655522111222222 55555555


Q ss_pred             CccccccchhhhcccCCcEEECccccccccCc-hhhhhhhhhHhhhhCCCCcc
Q 036729          724 NSLSGNIPSTIQQCKKLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNF  775 (970)
Q Consensus       724 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~~L~ls~N~l  775 (970)
                      |.++..  ..+.++.+|+.||++.|-+.+--- ..++.+..|.. |.|.+|.+
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~-L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV-LWLEGNPL  291 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH-HhhcCCcc
Confidence            555432  134455555555555555543211 22344455555 55666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=8.3e-07  Score=88.27  Aligned_cols=187  Identities=23%  Similarity=0.252  Sum_probs=82.6

Q ss_pred             CCCCCEEEccCccccc--cCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCc
Q 036729          257 LFNLRYLNLLGNIFDG--EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQ  334 (970)
Q Consensus       257 l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  334 (970)
                      ++.++.+||.+|.++.  .+-..+.++|.|+.|+|+.|.+...+...-....+|+.|-|.+..+.-.....+....|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4555555555555543  12223455666666666666665444332234455666666555544333333333344444


Q ss_pred             EEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCC--CCcCCCCcCCCCeeeccc
Q 036729          335 QLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGS--FPPEIGNLSKLENLFLFD  412 (970)
Q Consensus       335 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~  412 (970)
                      +|.++.|.+              +.+++..+.++..       -+.++++....|.....  .-..-.-++++..+.+..
T Consensus       150 elHmS~N~~--------------rq~n~Dd~c~e~~-------s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e  208 (418)
T KOG2982|consen  150 ELHMSDNSL--------------RQLNLDDNCIEDW-------STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE  208 (418)
T ss_pred             hhhhccchh--------------hhhcccccccccc-------chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence            444443321              1222222222211       12333333333322100  000011235566666666


Q ss_pred             ccccccCC-ccccCCCCCCEEEcccccCCCcC-CcccccCCCCCEEeccccccC
Q 036729          413 NMITGKIP-VEIGKLQTLSAIYLYDNQMSGSI-PRELTNCSGLTEIDFFGNHFS  464 (970)
Q Consensus       413 n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~  464 (970)
                      |.+...-. .....+|.+..|.++.+++.... -+.+..+++|..|.++++.+.
T Consensus       209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            65543221 22344555556666666554321 123445555666666655554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.10  E-value=1.8e-07  Score=91.70  Aligned_cols=197  Identities=21%  Similarity=0.235  Sum_probs=99.8

Q ss_pred             CCEEEEECCCCCCccc----cccCccCCCCCcEEECCCCCCC---CCCC-------ccccCCCCCcEeecCCCcCcCCCC
Q 036729           66 KHVVGLNLSSSGLSGS----ISRDFLNLTSLETLDLSSNSLT---GLIP-------SELGQLQNLRILLLYSNSFSGKIP  131 (970)
Q Consensus        66 ~~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~---~~~p-------~~l~~l~~L~~L~Ls~n~~~~~~p  131 (970)
                      ..++.++|++|.+...    +...+.+-++|+..+++.-...   ..++       .++-+|++|+..+||.|.|....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            3577778887777544    3344556677777777653221   1122       235567777777777777665555


Q ss_pred             cC----CCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcc---
Q 036729          132 PE----IGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPE---  204 (970)
Q Consensus       132 ~~----l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~---  204 (970)
                      +.    ++.-+.|.+|.+++|.+.-.--..++  +.|.+|  .+|+       ...+-+.|++.+...|++......   
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~l--a~nK-------Kaa~kp~Le~vicgrNRlengs~~~~a  178 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHL--AYNK-------KAADKPKLEVVICGRNRLENGSKELSA  178 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHH--HHHh-------hhccCCCceEEEeccchhccCcHHHHH
Confidence            43    34455666666666643111001111  012221  1121       123446677777777776543221   


Q ss_pred             -cccCCcccccccccccccCCCC-----cccccCCCCCcEEEccCCcCccccCc----cccCCCCCCEEEccCcccccc
Q 036729          205 -AIHGCEELQKFAASNNMLEGTI-----PSSIVLLKSLQILNLANNSLSGSIPV----ELSHLFNLRYLNLLGNIFDGE  273 (970)
Q Consensus       205 -~l~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~~~~~  273 (970)
                       .+..-.+|+++.+..|.+.-..     ...+..+.+|+.|||..|.++-....    .+...+.|+.|.+..|-++..
T Consensus       179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence             2233356666666666554221     11223456666666666666533222    222334456666666655543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=6.2e-07  Score=89.16  Aligned_cols=58  Identities=24%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             cCCCCCEEeCCCCcCCCC-CCcccccccccccccCCcccccCCCCc------CCCCcCCCCeeec
Q 036729          353 RCSSLQQLDLSDNSFKGE-LPRSLDKLEELTDLLLNNNSFTGSFPP------EIGNLSKLENLFL  410 (970)
Q Consensus       353 ~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L  410 (970)
                      .++.+..|+|+.+++..- -.+.+..+++|..|.++++++...+-.      .++.+++++.|+=
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            344444555555554321 123445566666666666665433221      1455666666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=8.3e-07  Score=78.01  Aligned_cols=89  Identities=30%  Similarity=0.352  Sum_probs=43.6

Q ss_pred             CccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEEC
Q 036729          666 QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRL  745 (970)
Q Consensus       666 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  745 (970)
                      ..|+..+|++|.|....+..-..++.++.|++++|.++ .+|+.+..+++|+.|+++.|.+.. .|..+..+.++-.||.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcC
Confidence            33444455555554322222223445555555555555 344445555556666666555542 2334444555555555


Q ss_pred             ccccccccCchh
Q 036729          746 SENFFTGSIPAD  757 (970)
Q Consensus       746 s~N~l~~~ip~~  757 (970)
                      .+|... +||..
T Consensus       131 ~~na~~-eid~d  141 (177)
T KOG4579|consen  131 PENARA-EIDVD  141 (177)
T ss_pred             CCCccc-cCcHH
Confidence            555554 44433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.85  E-value=3.2e-06  Score=83.10  Aligned_cols=199  Identities=21%  Similarity=0.180  Sum_probs=93.8

Q ss_pred             cccCCCCCcEeecCCCcCcCC----CCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccC
Q 036729          109 ELGQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGN  184 (970)
Q Consensus       109 ~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~  184 (970)
                      .+..+..+..++||+|.|...    +...+.+-++|++.++++-. +|..-..+.  .+|+           .+...+-+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~--~~L~-----------~Ll~aLlk   90 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELY--SNLV-----------MLLKALLK   90 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHH--HHHH-----------HHHHHHhc
Confidence            344567778888888877533    22334455666666666532 121110000  0011           01123445


Q ss_pred             CceeeEEEcCCCcCCCCCccc----ccCCcccccccccccccCCCCccc-------------ccCCCCCcEEEccCCcCc
Q 036729          185 LKHLTSLDLQMNKLSGLIPEA----IHGCEELQKFAASNNMLEGTIPSS-------------IVLLKSLQILNLANNSLS  247 (970)
Q Consensus       185 l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~l~  247 (970)
                      |++|+..+||.|.+....|+.    ++.-+.|++|.+++|.+.-..-..             ...-|.|+......|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            556666666666555444432    344455666666655543111111             123355666666666554


Q ss_pred             cccC----ccccCCCCCCEEEccCccccccCCc-----cccCCCCccEEECcCCcCcccc----ccccCCCCCccEEEcc
Q 036729          248 GSIP----VELSHLFNLRYLNLLGNIFDGEIPS-----ELNKLAQLEELDLSKNNLSGSI----SLLNTQLKNLETLVLS  314 (970)
Q Consensus       248 ~~~~----~~l~~l~~L~~L~L~~n~~~~~~~~-----~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~  314 (970)
                      .-..    ..+..-.+|+.+.+..|.+......     .+..+.+|++|||.+|.++...    ...+..++.|+.|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            2111    0122224566666666654422111     1234566666666666554322    2233445556666666


Q ss_pred             CCcccCC
Q 036729          315 DNAFTGS  321 (970)
Q Consensus       315 ~n~l~~~  321 (970)
                      .|-++..
T Consensus       251 DClls~~  257 (388)
T COG5238         251 DCLLSNE  257 (388)
T ss_pred             chhhccc
Confidence            6655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.60  E-value=0.00022  Score=77.22  Aligned_cols=58  Identities=14%  Similarity=0.161  Sum_probs=34.5

Q ss_pred             CccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCc
Q 036729           85 DFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN  148 (970)
Q Consensus        85 ~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n  148 (970)
                      .+..++++++|++++|.+. .+|. +  -.+|++|+++++.--..+|..+  ..+|++|++++|
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3556688888888888666 3441 1  2357777777654333455433  245666666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.49  E-value=8.4e-05  Score=53.10  Aligned_cols=37  Identities=43%  Similarity=0.673  Sum_probs=24.9

Q ss_pred             CCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729          787 LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ  824 (970)
Q Consensus       787 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  824 (970)
                      ++|++|++++|+|+ .+|..+.+++.|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35777777777777 35556777777777777777766

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=2.8e-05  Score=91.54  Aligned_cols=124  Identities=19%  Similarity=0.231  Sum_probs=59.7

Q ss_pred             CcccccccccccccCCC-CcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccc-cCCccccCCCCccE
Q 036729          209 CEELQKFAASNNMLEGT-IPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDG-EIPSELNKLAQLEE  286 (970)
Q Consensus       209 l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~  286 (970)
                      +|.|+.|.+.+-.+... ......++++|..||+++.+++..  ..++++++|+.|.+.+-.+.. ..-..+.+|++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            44444444444333211 112223556666666666665533  345566666666665544442 11123456667777


Q ss_pred             EECcCCcCcccc--c----cccCCCCCccEEEccCCcccCCCchhhhcCCCCCc
Q 036729          287 LDLSKNNLSGSI--S----LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQ  334 (970)
Q Consensus       287 L~L~~n~l~~~~--~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  334 (970)
                      ||+|........  .    +....+|+|+.||.|+..+.+.+-..+....++|+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            777665432211  0    11123566666666666555444444443333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.43  E-value=0.00012  Score=52.26  Aligned_cols=36  Identities=50%  Similarity=0.665  Sum_probs=18.4

Q ss_pred             CCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCc
Q 036729           91 SLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFS  127 (970)
Q Consensus        91 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~  127 (970)
                      +|++|++++|.++ .+|+.+++|++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=5.1e-05  Score=89.40  Aligned_cols=106  Identities=26%  Similarity=0.348  Sum_probs=58.4

Q ss_pred             CCcEEEccCcc-CCccCCccccC-Ccccchhhcccccccc-CCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccc
Q 036729          139 KLQVLRIGDNL-LWGEIPPHIGN-LTELRELAIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKF  215 (970)
Q Consensus       139 ~L~~L~L~~n~-~~~~~p~~l~~-l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  215 (970)
                      +|++||+++.. +....|..++. +++|+.|.+++-.+.. ..-....++++|..||+|+++++..  ..++.+++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            44455554432 22233333332 4555555555544322 1122345667777777777777755  566777777777


Q ss_pred             cccccccCC-CCcccccCCCCCcEEEccCCcC
Q 036729          216 AASNNMLEG-TIPSSIVLLKSLQILNLANNSL  246 (970)
Q Consensus       216 ~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l  246 (970)
                      .+.+=.+.. ..-..+.++++|+.||+|....
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            776655442 2223456677777777776544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.34  E-value=0.00038  Score=75.35  Aligned_cols=75  Identities=19%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             CcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC-cCcccCCccccccccc
Q 036729          638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN-NLSGKIPPEIGNLTAL  716 (970)
Q Consensus       638 l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L  716 (970)
                      +..|.+++.|++++|.++.. |.   -.++|++|.++++.-...+|..+  .++|++|++++| .+. .+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence            44567888888888877643 42   22468888887754434555544  357778888777 333 3343      35


Q ss_pred             ceeccCCCc
Q 036729          717 NVLNLQRNS  725 (970)
Q Consensus       717 ~~L~L~~N~  725 (970)
                      +.|+++.+.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.33  E-value=7.9e-06  Score=85.59  Aligned_cols=58  Identities=16%  Similarity=0.089  Sum_probs=29.8

Q ss_pred             CCcEeecCCCcCcCCCC--cCCCCCCCCcEEEccCcc-CCccCCccc-cCCcccchhhcccc
Q 036729          115 NLRILLLYSNSFSGKIP--PEIGFLNKLQVLRIGDNL-LWGEIPPHI-GNLTELRELAIAYC  172 (970)
Q Consensus       115 ~L~~L~Ls~n~~~~~~p--~~l~~l~~L~~L~L~~n~-~~~~~p~~l-~~l~~L~~L~L~~~  172 (970)
                      .||.|.++++.-.+.-+  ....+++++++|++.++. +++..-..+ ..+++|++|++..|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c  200 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC  200 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc
Confidence            56777777765333211  122456677777666664 222222222 23556666666653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.26  E-value=0.00073  Score=62.51  Aligned_cols=104  Identities=16%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             cccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcce
Q 036729          614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL  693 (970)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  693 (970)
                      |.++++|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33444444444432 233333334444444444444432 3322233344444444444433 22222233344445555


Q ss_pred             EEEccCCcCcccCCcccccccccceeccC
Q 036729          694 KLSLRGNNLSGKIPPEIGNLTALNVLNLQ  722 (970)
Q Consensus       694 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~  722 (970)
                      .+++..+ +.......|.+. .|+.+.+.
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            5554433 332223334443 44444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.22  E-value=9.6e-06  Score=84.97  Aligned_cols=295  Identities=21%  Similarity=0.188  Sum_probs=158.1

Q ss_pred             CCCcEEECCCCCCCCC--CCccccCCCCCcEeecCCCc-CcCCCCcCC-CCCCCCcEEEccCcc-CCccCCc-cccCCcc
Q 036729           90 TSLETLDLSSNSLTGL--IPSELGQLQNLRILLLYSNS-FSGKIPPEI-GFLNKLQVLRIGDNL-LWGEIPP-HIGNLTE  163 (970)
Q Consensus        90 ~~L~~L~Ls~n~~~~~--~p~~l~~l~~L~~L~Ls~n~-~~~~~p~~l-~~l~~L~~L~L~~n~-~~~~~p~-~l~~l~~  163 (970)
                      ..|+.|.|+++.=.+.  +-..-.+++++++|++.++. ++...-.++ ..+++|++|++..|. ++...-. ....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3567777776643332  22344567777777777665 221111122 346777777777753 3322222 2234777


Q ss_pred             cchhhccccc-cccC-CCccccCCceeeEEEcCCCcCCCCCcccc----cCCcccccccccccc-cCCCC-cccccCCCC
Q 036729          164 LRELAIAYCQ-LNGS-IPVEIGNLKHLTSLDLQMNKLSGLIPEAI----HGCEELQKFAASNNM-LEGTI-PSSIVLLKS  235 (970)
Q Consensus       164 L~~L~L~~~~-~~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~  235 (970)
                      |++++++.|. +++. +-.-...+..++.+.+.++.=  ...+.+    ..+..+.++++..+. +++.. ...-..+..
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            7788777764 2221 111233444455555554321  111222    234445555554543 22111 011134667


Q ss_pred             CcEEEccCCcCccccC-ccc-cCCCCCCEEEccCccc-cccCCccc-cCCCCccEEECcCCcCc--cccccccCCCCCcc
Q 036729          236 LQILNLANNSLSGSIP-VEL-SHLFNLRYLNLLGNIF-DGEIPSEL-NKLAQLEELDLSKNNLS--GSISLLNTQLKNLE  309 (970)
Q Consensus       236 L~~L~L~~n~l~~~~~-~~l-~~l~~L~~L~L~~n~~-~~~~~~~l-~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~  309 (970)
                      |+.|+.+++...+..+ ..+ .+..+|+.|-+++|+. +...-..+ .+++.|+.+++..+...  +.+...-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            7888887765432211 122 3577888888888763 22222222 35678888888877543  22333446788888


Q ss_pred             EEEccCCcccCCCc----hhhhcCCCCCcEEEccCCcCC-CCCccccccCCCCCEEeCCCCcCC-CC-CCcccccccccc
Q 036729          310 TLVLSDNAFTGSIP----IKFCLNNSSLQQLILARNKLS-GEFPLELLRCSSLQQLDLSDNSFK-GE-LPRSLDKLEELT  382 (970)
Q Consensus       310 ~L~L~~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~-~~-~~~~l~~l~~L~  382 (970)
                      .+.++++.......    .........++.+.++++... ......+..|++|+.+++-.++-. .. +...-..+++++
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~  455 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK  455 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence            88888776542221    111124678888999988654 345566778999999999887632 11 112223566666


Q ss_pred             cccC
Q 036729          383 DLLL  386 (970)
Q Consensus       383 ~L~L  386 (970)
                      +..+
T Consensus       456 v~a~  459 (483)
T KOG4341|consen  456 VHAY  459 (483)
T ss_pred             ehhh
Confidence            5544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.21  E-value=0.0006  Score=64.83  Aligned_cols=56  Identities=29%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             CcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCc
Q 036729          236 LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN  293 (970)
Q Consensus       236 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  293 (970)
                      ...+||++|.+...  ..|..++.|..|.+.+|+++.+.|.--..+++|+.|.|.+|+
T Consensus        44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            34444444444311  123344444444444444443333322223334444444333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.18  E-value=0.00055  Score=65.10  Aligned_cols=82  Identities=29%  Similarity=0.357  Sum_probs=40.6

Q ss_pred             eeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccC-ccccCCCCCCEEEc
Q 036729          187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIP-VELSHLFNLRYLNL  265 (970)
Q Consensus       187 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L  265 (970)
                      +...+||++|.+...  +.|..+++|.+|.+++|.++...|.--..+++|+.|.|.+|++..... .-+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            445566666665433  334455555555555555554444433445556666666655542110 11334445555554


Q ss_pred             cCccc
Q 036729          266 LGNIF  270 (970)
Q Consensus       266 ~~n~~  270 (970)
                      -+|..
T Consensus       121 l~Npv  125 (233)
T KOG1644|consen  121 LGNPV  125 (233)
T ss_pred             cCCch
Confidence            44443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.13  E-value=0.00082  Score=62.15  Aligned_cols=123  Identities=18%  Similarity=0.273  Sum_probs=61.3

Q ss_pred             cccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCc
Q 036729          588 SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQE  667 (970)
Q Consensus       588 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~  667 (970)
                      .+|..+++|+.+.+.. .+...-...|..+++|+.+++..+ +.......|.++.+++.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3455666677777664 344444556777777888887764 5555556677777788888865 443344456777888


Q ss_pred             cceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccccc
Q 036729          668 IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL  716 (970)
Q Consensus       668 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L  716 (970)
                      |+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            888888665 554555667776 888887765 4443444455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.36  E-value=0.0028  Score=63.29  Aligned_cols=66  Identities=24%  Similarity=0.356  Sum_probs=31.3

Q ss_pred             ccccCccceEEcccC--cCcCCCCCCCCCCCcceEEEccCCcCccc-CCcccccccccceeccCCCccc
Q 036729          662 LGSLQEIGELDLSSN--NFNGTVPAEIGNCSKLLKLSLRGNNLSGK-IPPEIGNLTALNVLNLQRNSLS  727 (970)
Q Consensus       662 l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~  727 (970)
                      +..+++|+.|+++.|  +..+..+.....+++|++|++++|++... .-..+..+.+|..|++.+|.-+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            334555566666666  33333333333446666666666665420 0012334444555555555433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.35  E-value=0.0021  Score=64.14  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=19.4

Q ss_pred             CCCCCcEeecCCC--cCcCCCCcCCCCCCCCcEEEccCccC
Q 036729          112 QLQNLRILLLYSN--SFSGKIPPEIGFLNKLQVLRIGDNLL  150 (970)
Q Consensus       112 ~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~L~~n~~  150 (970)
                      .+++|++|.+|.|  .+.+.++.....+++|++|++++|++
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            4455555555555  33333333334445555555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=0.00049  Score=68.46  Aligned_cols=63  Identities=29%  Similarity=0.310  Sum_probs=29.3

Q ss_pred             CCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCC
Q 036729          280 KLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS  344 (970)
Q Consensus       280 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  344 (970)
                      .|+.|++|.|+-|.++..-|  +..|++|++|+|..|.+...-......++++|+.|.|..|.-.
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            44445555555554443322  3445555555555555543323333344445555555444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.88  E-value=0.0005  Score=68.36  Aligned_cols=79  Identities=25%  Similarity=0.366  Sum_probs=40.2

Q ss_pred             ccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC-cccccccccceeccCCCccccccch-----hhhcc
Q 036729          664 SLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNIPS-----TIQQC  737 (970)
Q Consensus       664 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~-----~~~~l  737 (970)
                      .++.|++|.|+-|+++..-|  +..|++|++|+|..|.|..... ..+.++++|+.|-|..|.-.|.-+.     .+.-+
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L  116 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL  116 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence            44555555555555554333  4555556666666555542211 2345566666666666655544432     23345


Q ss_pred             cCCcEEE
Q 036729          738 KKLYELR  744 (970)
Q Consensus       738 ~~L~~L~  744 (970)
                      ++|+.||
T Consensus       117 PnLkKLD  123 (388)
T KOG2123|consen  117 PNLKKLD  123 (388)
T ss_pred             ccchhcc
Confidence            5555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.69  E-value=0.0013  Score=76.79  Aligned_cols=110  Identities=23%  Similarity=0.169  Sum_probs=53.6

Q ss_pred             CcccchhhccccccccC--CCccccCCceeeEEEcCCC-cCCCCC----cccccCCcccccccccccc-cCCCCcccccC
Q 036729          161 LTELRELAIAYCQLNGS--IPVEIGNLKHLTSLDLQMN-KLSGLI----PEAIHGCEELQKFAASNNM-LEGTIPSSIVL  232 (970)
Q Consensus       161 l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~Ls~n-~i~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~  232 (970)
                      ++.|+.|.+..+.-...  .-.....+++|+.|+++++ ......    ......+++|+.|+++++. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56677777766643322  2234456677777777652 111111    1123345666666666665 44333333332


Q ss_pred             -CCCCcEEEccCCc-CccccCcc-ccCCCCCCEEEccCccc
Q 036729          233 -LKSLQILNLANNS-LSGSIPVE-LSHLFNLRYLNLLGNIF  270 (970)
Q Consensus       233 -l~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n~~  270 (970)
                       +++|++|.+.++. ++...-.. ...+++|++|++++|..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence             5566666655554 33221111 23455566666655543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.36  E-value=0.0016  Score=75.85  Aligned_cols=13  Identities=23%  Similarity=0.690  Sum_probs=6.5

Q ss_pred             cccccEEeccCCc
Q 036729          498 CKRLQQIALADNK  510 (970)
Q Consensus       498 ~~~L~~L~Ls~n~  510 (970)
                      +..+..+++.++.
T Consensus       426 ~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  426 CSNLKDLDLSGCR  438 (482)
T ss_pred             hhccccCCccCcc
Confidence            4445555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.22  E-value=0.0077  Score=35.63  Aligned_cols=21  Identities=38%  Similarity=0.630  Sum_probs=12.4

Q ss_pred             CCCEEeCCCCcCccccCcccCC
Q 036729          788 KLERLNISYNQLQGQVPASLGK  809 (970)
Q Consensus       788 ~L~~L~ls~N~l~~~~p~~l~~  809 (970)
                      +|++|||++|+++ .+|.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.02  E-value=0.022  Score=33.65  Aligned_cols=19  Identities=47%  Similarity=0.539  Sum_probs=9.9

Q ss_pred             CcEEECccccccccCchhhh
Q 036729          740 LYELRLSENFFTGSIPADLG  759 (970)
Q Consensus       740 L~~L~Ls~N~l~~~ip~~l~  759 (970)
                      |++|||++|+++ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.61  E-value=0.004  Score=70.43  Aligned_cols=110  Identities=25%  Similarity=0.223  Sum_probs=48.4

Q ss_pred             cccEEEccCCcccCC----ccccccccCccceEEcccCcCcC----CCCCC----CCCCCcceEEEccCCcCcccCC---
Q 036729          643 KLAHLLLSNNELTGT----IPFWLGSLQEIGELDLSSNNFNG----TVPAE----IGNCSKLLKLSLRGNNLSGKIP---  707 (970)
Q Consensus       643 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~----l~~l~~L~~L~L~~N~l~~~~~---  707 (970)
                      .+++|++..|.+++.    +...+...+.++.+|++.|.+..    .++..    +....++++|++.+|.++...-   
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            344455555554432    23334445556666666665531    11111    2234556666666666552110   


Q ss_pred             -cccccccc-cceeccCCCccccc----cchhhhcc-cCCcEEECccccccc
Q 036729          708 -PEIGNLTA-LNVLNLQRNSLSGN----IPSTIQQC-KKLYELRLSENFFTG  752 (970)
Q Consensus       708 -~~l~~l~~-L~~L~L~~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~  752 (970)
                       ..+...++ +..+++..|.+...    ....+..+ ..++.++++.|.++.
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence             11222333 44456666655422    11122223 334555555555543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.25  E-value=0.0028  Score=71.70  Aligned_cols=83  Identities=23%  Similarity=0.182  Sum_probs=39.4

Q ss_pred             cchhhccccccccCC----CccccCCceeeEEEcCCCcCCCCCcccc----cCC-cccccccccccccCCC----Ccccc
Q 036729          164 LRELAIAYCQLNGSI----PVEIGNLKHLTSLDLQMNKLSGLIPEAI----HGC-EELQKFAASNNMLEGT----IPSSI  230 (970)
Q Consensus       164 L~~L~L~~~~~~~~~----p~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~l-~~L~~L~l~~n~l~~~----~~~~l  230 (970)
                      +.+|.|.+|.+....    ...+..+.+|+.|++++|.+.+.....+    ... ..+++|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            445555555444322    2234445566666666666553322221    121 4455566665555433    22333


Q ss_pred             cCCCCCcEEEccCCcC
Q 036729          231 VLLKSLQILNLANNSL  246 (970)
Q Consensus       231 ~~l~~L~~L~L~~n~l  246 (970)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            4455555556655554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.43  E-value=0.035  Score=54.21  Aligned_cols=87  Identities=23%  Similarity=0.251  Sum_probs=62.2

Q ss_pred             cccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCC
Q 036729          710 IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKL  789 (970)
Q Consensus       710 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L  789 (970)
                      +......+.||++.|++.. ....|.-++.+..||++.|++. ..|.+++++..+.. +++..|..+ ..|.+++.++.+
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~-~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVN-AASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHH-HHhhccchh-hCCccccccCCc
Confidence            4445566677777776642 2234555666777788877776 67888888888877 788777777 677888888888


Q ss_pred             CEEeCCCCcCc
Q 036729          790 ERLNISYNQLQ  800 (970)
Q Consensus       790 ~~L~ls~N~l~  800 (970)
                      +++++-.|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88888777654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.31  E-value=0.049  Score=53.24  Aligned_cols=88  Identities=24%  Similarity=0.203  Sum_probs=76.1

Q ss_pred             hhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCc
Q 036729          733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTS  812 (970)
Q Consensus       733 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~  812 (970)
                      .+......+.||++.|++. ..-..+.-++.+.. +|+|.|.+. ..|..++++..+..+++.+|..+ ..|.++...+.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~r-l~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVR-LDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHH-HhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            4566677899999999887 45567788889988 999999988 77889999999999999888887 68999999999


Q ss_pred             CcEEecCCCccc
Q 036729          813 LHVLNLSNNHLQ  824 (970)
Q Consensus       813 L~~l~ls~N~l~  824 (970)
                      +++++.-.|+|.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999999875

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=86.43  E-value=0.4  Score=42.56  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=18.1

Q ss_pred             ccccCceEEEEehhhHHHHHHHHHHHHHHHHH
Q 036729          862 KRLSNTAVVVIITAILFTSAVICLIMLYIMLR  893 (970)
Q Consensus       862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  893 (970)
                      ++.....+++|+++++++++.++++++|+++|
T Consensus        59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR   90 (122)
T PF01102_consen   59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRR   90 (122)
T ss_dssp             SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccccceeehhHHHHHHHHHHHHHHHHHHHH
Confidence            34455566777777777665555545554433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.81  E-value=0.16  Score=48.92  Aligned_cols=81  Identities=17%  Similarity=0.245  Sum_probs=50.0

Q ss_pred             CCcEEEccCccCCccCCccccCCcccchhhccccccccC-CCcccc-CCceeeEEEcCCCc-CCCCCcccccCCcccccc
Q 036729          139 KLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGS-IPVEIG-NLKHLTSLDLQMNK-LSGLIPEAIHGCEELQKF  215 (970)
Q Consensus       139 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~-~p~~l~-~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L  215 (970)
                      .++.+|-+++.+..+--+.+.+++.++.|.+.+|.-.+. --..++ -.++|+.|++++|. |+......+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456666666666555556666677777777776653211 111122 23678888888774 776666667777777777


Q ss_pred             cccc
Q 036729          216 AASN  219 (970)
Q Consensus       216 ~l~~  219 (970)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6653

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=85.72  E-value=0.75  Score=30.81  Aligned_cols=21  Identities=33%  Similarity=0.629  Sum_probs=10.5

Q ss_pred             EEEehhhHHHHHHHHHHHHHH
Q 036729          870 VVIITAILFTSAVICLIMLYI  890 (970)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~~~~  890 (970)
                      ++++++++++++++++.++++
T Consensus         6 IaIIv~V~vg~~iiii~~~~Y   26 (38)
T PF02439_consen    6 IAIIVAVVVGMAIIIICMFYY   26 (38)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            445555555555544444443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=85.63  E-value=0.47  Score=25.94  Aligned_cols=10  Identities=50%  Similarity=0.491  Sum_probs=3.1

Q ss_pred             CcEeecCCCc
Q 036729          116 LRILLLYSNS  125 (970)
Q Consensus       116 L~~L~Ls~n~  125 (970)
                      ||.|+|++|.
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	970
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-61
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-61
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-20
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-07
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		4e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		5e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		4e-07
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		4e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		9e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		6e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		7e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-06
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		3e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		6e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-06
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-05
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		8e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		6e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		7e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		7e-04
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		7e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  234 bits (596), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 212/697 (30%), Positives = 312/697 (44%), Gaps = 94/697 (13%)
Query: 218 SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV--ELSHLFNLRYLNLLGNIFD--GE 273
           SN+ + G++ S      SL  L+L+ NSLSG +     L     L++LN+  N  D  G+
Sbjct: 82  SNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 274 IPSELNKLAQLEELDLSKNNLSGSISL---LNTQLKNLETLVLSDNAFTGSIPIKFCLNN 330
           +   L KL  LE LDLS N++SG+  +   L+     L+ L +S N  +G + +  C+N 
Sbjct: 141 VSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN- 198
Query: 331 SSLQQLILARNKLSGEFPLELLRCXXXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXS 390
             L+ L ++ N  S   P  L  C          N   G+  R+                
Sbjct: 199 --LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN- 449
           F G  PP                     +P     L++L  + L +N+ +G IP  L+  
Sbjct: 256 FVGPIPP---------------------LP-----LKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALAD 508
           C  LT +D  GNHF G++P   G    L  L L  N+ SG +P  +L   + L+ + L+ 
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 509 NKLSGSVPLTFRFLS-ELYLITLYNNSFKGPLPPSLFQLKK--LRIINFSHNKFSGSIYP 565
           N+ SG +P +   LS  L  + L +N+F GP+ P+L Q  K  L+ +   +N F+G I P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 566 -LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
            L+  + L +L L+ N  SG IPS L     L  L+L  N L G IP E   +  L  L 
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
           L FN  TG+I   LS C  L  + LSNN LTG IP W+G L+ +  L LS+N+F+G +PA
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 685 EIGNCSKLLKLSLRGNNLSGKIPP------------------------------------ 708
           E+G+C  L+ L L  N  +G IP                                     
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 709 ----------EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL 758
                     ++  L+  N  N+      G+   T      +  L +S N  +G IP ++
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXX 818
           G +  L  IL+L  N+ SG IP  +G L  L  L++S N+L G++P ++           
Sbjct: 650 GSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 819 XXXXXQGQLPLT--FSGFPLSSFLGNAKLCGPPLLSC 853
                 G +P    F  FP + FL N  LCG PL  C
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  233 bits (594), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 214/697 (30%), Positives = 317/697 (45%), Gaps = 94/697 (13%)
Query: 218 SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV--ELSHLFNLRYLNLLGNIFD--GE 273
           SN+ + G++ S      SL  L+L+ NSLSG +     L     L++LN+  N  D  G+
Sbjct: 85  SNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 274 IPSELNKLAQLEELDLSKNNLSGSISL---LNTQLKNLETLVLSDNAFTGSIPIKFCLNN 330
           +   L KL  LE LDLS N++SG+  +   L+     L+ L +S N  +G + +  C+N 
Sbjct: 144 VSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN- 201
Query: 331 SSLQQLILARNKLSGEFPLELLRCXXXXXXXXXXNSFKGELPRSXXXXXXXXXXXXXXXS 390
             L+ L ++ N  S   P  L  C          N   G+  R+                
Sbjct: 202 --LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA---------------- 242
Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN- 449
                   I   ++L+ L +  N   G IP     L++L  + L +N+ +G IP  L+  
Sbjct: 243 --------ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALAD 508
           C  LT +D  GNHF G++P   G    L  L L  N+ SG +P  +L   + L+ + L+ 
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 509 NKLSGSVPLTFRFLS-ELYLITLYNNSFKGPLPPSLFQLKK--LRIINFSHNKFSGSIYP 565
           N+ SG +P +   LS  L  + L +N+F GP+ P+L Q  K  L+ +   +N F+G I P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 566 -LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
            L+  + L +L L+ N  SG IPS L     L  L+L  N L G IP E   +  L  L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
           L FN  TG+I   LS C  L  + LSNN LTG IP W+G L+ +  L LS+N+F+G +PA
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 685 EIGNCSKLLKLSLRGNNLSGKIPP------------------------------------ 708
           E+G+C  L+ L L  N  +G IP                                     
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 709 ----------EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL 758
                     ++  L+  N  N+      G+   T      +  L +S N  +G IP ++
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXX 818
           G +  L  IL+L  N+ SG IP  +G L  L  L++S N+L G++P ++           
Sbjct: 653 GSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 819 XXXXXQGQLPLT--FSGFPLSSFLGNAKLCGPPLLSC 853
                 G +P    F  FP + FL N  LCG PL  C
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 141/316 (44%), Gaps = 49/316 (15%)
Query: 565 PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN--IPSEFGKLTELNF 622
           P T S+ L   D  N ++ G +      +  ++ L L+  +L     IPS    L  LNF
Sbjct: 21  PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80
Query: 623 LDLS-FNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
           L +   N+  G I P ++K  +L +L +++  ++G IP +L  ++ +  LD S N  +GT
Sbjct: 81  LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL-NVLNLQRNSLSGNIPSTIQQCKKL 740
           +P  I +   L+ ++  GN +SG IP   G+ + L   + + RN L+G IP T      L
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NL 199
Query: 741 YELRLSENFFTG--------------------SIPADLGRLTELQVI--LDLSKNNFSGE 778
             + LS N   G                    S+  DLG++   + +  LDL  N   G 
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 779 IPPSLGSLLKLERLNISYNQLQGQVPASLGKXXXXXXXXXXXXXXQGQLPLTFSGFPLSS 838
           +P  L  L  L  LN+S+N L G++P                   QG        F +S+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP-------------------QGG---NLQRFDVSA 297
Query: 839 FLGNAKLCGPPLLSCS 854
           +  N  LCG PL +C+
Sbjct: 298 YANNKCLCGSPLPACT 313

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 136/302 (45%), Gaps = 28/302 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID- 457
           + NL+ L  L LF+N IT   P++   L  L+ + L  N +S     +++  SGLT +  
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 458 -FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
             FGN  +   P  +  L  L  L +  N +S    + L     L+ +   +N++S   P
Sbjct: 156 LNFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 211
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
           L    L+ L  ++L  N  K     +L  L  L  ++ ++N+ S ++ PL+G   LT L 
Sbjct: 212 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELK 266
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
           L  N  S   P  LA    L+ L L  N L    P     L  L +L L FN+ +  I+P
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DISP 321
Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
            +S   KL  L  SNN+++      L +L  I  L    N  +   P  + N +++ +L 
Sbjct: 322 -VSSLTKLQRLFFSNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 376
Query: 697 LR 698
           L 
Sbjct: 377 LN 378

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 129/301 (42%), Gaps = 41/301 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
             +L+ L  I   NN      P  L  L KL  I  ++N+ +  I PL    +LT L L 
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT----------------GNIPSE---FGKLTE 619
           NN  +   P  L    NL+RL L+ N ++                GN  ++      LT 
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
           L  LD+S N  +      L+K   L  L+ +NN+++   P  LG L  + EL L+ N   
Sbjct: 174 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 229
Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
                 + + + L  L L  N +S   P  +  LT L  L L  N +S   P  +     
Sbjct: 230 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 740 LYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ 798
           L  L L+EN      P ++L  LT L +      NN S +I P + SL KL+RL  S N+
Sbjct: 284 LTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRLFFSNNK 337
Query: 799 L 799
           +
Sbjct: 338 V 338

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 136/302 (45%), Gaps = 28/302 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID- 457
           + NL+ L  L LF+N IT   P++   L  L+ + L  N +S     +++  SGLT +  
Sbjct: 107 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 159
Query: 458 -FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
             FGN  +   P  +  L  L  L +  N +S    + L     L+ +   +N++S   P
Sbjct: 160 LSFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 215
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
           L    L+ L  ++L  N  K     +L  L  L  ++ ++N+ S ++ PL+G   LT L 
Sbjct: 216 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELK 270
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
           L  N  S   P  LA    L+ L L  N L    P     L  L +L L FN+ +  I+P
Sbjct: 271 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DISP 325
Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
            +S   KL  L  +NN+++      L +L  I  L    N  +   P  + N +++ +L 
Sbjct: 326 -VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 380
Query: 697 LR 698
           L 
Sbjct: 381 LN 382

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 129/301 (42%), Gaps = 41/301 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
             +L+ L  I   NN      P  L  L KL  I  ++N+ +  I PL    +LT L L 
Sbjct: 63  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLF 119
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT----------------GNIPSE---FGKLTE 619
           NN  +   P  L    NL+RL L+ N ++                GN  ++      LT 
Sbjct: 120 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 177
Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
           L  LD+S N  +      L+K   L  L+ +NN+++   P  LG L  + EL L+ N   
Sbjct: 178 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 233
Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
                 + + + L  L L  N +S   P  +  LT L  L L  N +S   P  +     
Sbjct: 234 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 287
Query: 740 LYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ 798
           L  L L+EN      P ++L  LT L +      NN S +I P + SL KL+RL  + N+
Sbjct: 288 LTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRLFFANNK 341
Query: 799 L 799
           +
Sbjct: 342 V 342

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 8/243 (3%)
Query: 86  FLNLTSLETLDLSSNSLTGLIPSEXXXXXXXXXXXXYSNSFSGKIPPEIGFLNKLQVLRI 145
           F   T ++ LDL++  L GL PS              +NSF             L+ L I
Sbjct: 273 FRCFTRVQELDLTAAHLNGL-PSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYI 331
Query: 146 GDNLLWGEIPPH-IGNLTELRELAIAYCQLNGS--IPVEIGNLKHLTSLDLQMNKLSGLI 202
             N+   ++    +  L  L++L +++  +  S    +++ NL+HL  L+L  N+  GL 
Sbjct: 332 KGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLE 391
Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSS-IVLLKSLQILNLANNSLSGSIPVELSHLFNLR 261
            +A   C +L+    +   L    P S    L  L++LNL++  L  S    L+ L +LR
Sbjct: 392 DQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLR 451
Query: 262 YLNLLGNIF-DGEIPSE--LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAF 318
           +LNL GN F DG I     L  +  LE L LS  NL          L+N+  L LS N+ 
Sbjct: 452 HLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
Query: 319 TGS 321
           TG 
Sbjct: 512 TGD 514

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 8/219 (3%)
Query: 471 MGKLKNLVILQLRQNDL--SGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
           + KL+NL  L L  +D+  S      L   + LQ + L+ N+  G     F+   +L L+
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 529 TLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGS-IYPLTGSNSLTALDLTNNSF-SGP 585
            +         P S FQ L  LR++N SH     S  + L G   L  L+L  NSF  G 
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 586 IPSE--LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAK 643
           I     L M  +L  L L+  +L       F  L  +N LDLS NS TG     LS    
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTV 682
           L +L +++N +    P  L +L +   ++LS N  + T 
Sbjct: 525 L-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTC 562

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 135/302 (44%), Gaps = 28/302 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID- 457
           + NL+ L  L LF+N IT   P++   L  L+ + L  N +S     +++  SGLT +  
Sbjct: 108 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 160
Query: 458 -FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
             FGN  +   P  +  L  L  L +  N +S    + L     L+ +   +N++S   P
Sbjct: 161 LSFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
           L    L+ L  ++L  N  K     +L  L  L  ++ ++N+ S ++ PL+G   LT L 
Sbjct: 217 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELK 271
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
           L  N  S   P  LA    L+ L L  N L    P     L  L +L L FN+ +  I+P
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DISP 326
Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
            +S   KL  L   NN+++      L +L  I  L    N  +   P  + N +++ +L 
Sbjct: 327 -VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381
Query: 697 LR 698
           L 
Sbjct: 382 LN 383

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
             +L+ L  I   NN      P  L  L KL  I  ++N+ +  I PL    +LT L L 
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLF 120
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT----------------GNIPSE---FGKLTE 619
           NN  +   P  L    NL+RL L+ N ++                GN  ++      LT 
Sbjct: 121 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 178
Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
           L  LD+S N  +      L+K   L  L+ +NN+++   P  LG L  + EL L+ N   
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234
Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
                 + + + L  L L  N +S   P  +  LT L  L L  N +S   P  +     
Sbjct: 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288
Query: 740 LYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
           L  L L+EN      P ++L  LT L +      NN S +I P + SL KL+RL
Sbjct: 289 LTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRL 336

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 29/303 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLT---E 455
           + NL+ L  L LF+N IT   P++   L  L+ + L  N +S     +++  SGLT   +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
           + F  N  +   P  +  L  L  L +  N +S    + L     L+ +   +N++S   
Sbjct: 156 LSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 211
Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
           PL    L+ L  ++L  N  K     +L  L  L  ++ ++N+ S  + PL+G   LT L
Sbjct: 212 PL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTEL 266
Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
            L  N  S   P  LA    L+ L L  N L    P     L  L +L L FN+ +  I+
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DIS 321
Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
           P +S   KL  L  SNN+++      L +L  I  L    N  +   P  + N +++ +L
Sbjct: 322 P-VSSLTKLQRLFFSNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQL 376
Query: 696 SLR 698
            L 
Sbjct: 377 GLN 379

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 126/302 (41%), Gaps = 42/302 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
             +L+ L  I   NN      P  L  L KL  I  ++N+    I PL    +LT L L 
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIP-------SELAMSRN-------------LSRLRLAHNHLTGNIPSEFGKLT 618
           NN  +   P       + L +S N             L +L  + N +T   P     LT
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
            L  LD+S N  +      L+K   L  L+ +NN+++   P  LG L  + EL L+ N  
Sbjct: 174 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK 738
                  + + + L  L L  N +S   P  +  LT L  L L  N +S   P  +    
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 739 KLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797
            L  L L+EN      P ++L  LT L +      NN S +I P + SL KL+RL  S N
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRLFFSNN 337
Query: 798 QL 799
           ++
Sbjct: 338 KV 339

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 135/302 (44%), Gaps = 28/302 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID- 457
           + NL+ L  L LF+N IT   P++   L  L+ + L  N +S     +++  SGLT +  
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 458 -FFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
             FGN  +   P  +  L  L  L +  N +S    + L     L+ +   +N++S   P
Sbjct: 156 LNFGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 211
Query: 517 LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
           L    L+ L  ++L  N  K     +L  L  L  ++ ++N+ S ++ PL+G   LT L 
Sbjct: 212 L--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELK 266
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
           L  N  S   P  LA    L+ L L  N L    P     L  L +L L FN+ +  I+P
Sbjct: 267 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DISP 321
Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS 696
            +S   KL  L   NN+++      L +L  I  L    N  +   P  + N +++ +L 
Sbjct: 322 -VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLG 376
Query: 697 LR 698
           L 
Sbjct: 377 LN 378

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 125/294 (42%), Gaps = 41/294 (13%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
             +L+ L  I   NN      P  L  L KL  I  ++N+ +  I PL    +LT L L 
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT----------------GNIPSE---FGKLTE 619
           NN  +   P  L    NL+RL L+ N ++                GN  ++      LT 
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTT 173
Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
           L  LD+S N  +      L+K   L  L+ +NN+++   P  LG L  + EL L+ N   
Sbjct: 174 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 229
Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
                 + + + L  L L  N +S   P  +  LT L  L L  N +S   P  +     
Sbjct: 230 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 740 LYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
           L  L L+EN      P ++L  LT L +      NN S +I P + SL KL+RL
Sbjct: 284 LTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRL 331

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 136/303 (44%), Gaps = 29/303 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLT---E 455
           + NL+ L  L LF+N IT   P++   L  L+ + L  N +S     +++  SGLT   +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
           ++F  N  +   P  +  L  L  L +  N +S    + L     L+ +   +N++S   
Sbjct: 156 LNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 211
Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
           PL    L+ L  ++L  N  K     +L  L  L  ++ ++N+ S ++ PL+G   LT L
Sbjct: 212 PL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTEL 266
Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
            L  N  S   P  LA    L+ L L  N L    P     L  L +L L FN+ +  I+
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DIS 321
Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
           P +S   KL  L   NN+++      L +L  I  L    N  +   P  + N +++ +L
Sbjct: 322 P-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQL 376
Query: 696 SLR 698
            L 
Sbjct: 377 GLN 379

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 122/295 (41%), Gaps = 42/295 (14%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
             +L+ L  I   NN      P  L  L KL  I  ++N+    I PL    +LT L L 
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLTG-------------NIPSE-------FGKLT 618
           NN  +   P  L    NL+RL L+ N ++              N  S           LT
Sbjct: 116 NNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLT 173
Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
            L  LD+S N  +      L+K   L  L+ +NN+++   P  LG L  + EL L+ N  
Sbjct: 174 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK 738
                  + + + L  L L  N +S   P  +  LT L  L L  N +S   P  +    
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 739 KLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
            L  L L+EN      P ++L  LT L +      NN S +I P + SL KL+RL
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRL 332

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 182 IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241
            G L HL  L+L+ N+L+G+ P A  G   +Q+     N ++       + L  L+ LNL
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 242 ANNSLSGSIPVELSHLFNLRYLNLLGNIFD 271
            +N +S  +P    HL +L  LNL  N F+
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 471 MGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL 530
            G+L +LV L+L++N L+G  P +      +Q++ L +NK+       F  L +L  + L
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 531 YNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY 564
           Y+N     +P S   L  L  +N + N F+ + +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 135/303 (44%), Gaps = 29/303 (9%)
Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLT---E 455
           + NL+ L  L LF+N IT   P++   L  L+ + L  N +S     +++  SGLT   +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTIS-----DISALSGLTSLQQ 155
Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
           + F  N  +   P  +  L  L  L +  N +S    + L     L+ +   +N++S   
Sbjct: 156 LSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT 211
Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
           PL    L+ L  ++L  N  K     +L  L  L  ++ ++N+ S ++ PL+G   LT L
Sbjct: 212 PL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTEL 266
Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
            L  N  S   P  LA    L+ L L  N L    P     L  L +L L FN+ +  I+
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS-DIS 321
Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
           P +S   KL  L   NN+++      L +L  I  L    N  +   P  + N +++ +L
Sbjct: 322 P-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQL 376
Query: 696 SLR 698
            L 
Sbjct: 377 GLN 379

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 122/295 (41%), Gaps = 42/295 (14%)
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
             +L+ L  I   NN      P  L  L KL  I  ++N+    I PL    +LT L L 
Sbjct: 59  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF 115
Query: 579 NNSFSGPIP-------SELAMSRN-------------LSRLRLAHNHLTGNIPSEFGKLT 618
           NN  +   P       + L +S N             L +L  + N +T   P     LT
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
            L  LD+S N  +      L+K   L  L+ +NN+++   P  LG L  + EL L+ N  
Sbjct: 174 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 229
Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK 738
                  + + + L  L L  N +S   P  +  LT L  L L  N +S   P  +    
Sbjct: 230 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 739 KLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
            L  L L+EN      P ++L  LT L +      NN S +I P + SL KL+RL
Sbjct: 284 ALTNLELNENQLEDISPISNLKNLTYLTLYF----NNIS-DISP-VSSLTKLQRL 332

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 11/264 (4%)
Query: 503 QIALADNKLSGSVPLTFRFLSELYLITLYNN--SFKGPLPPSLFQLKKLRIINFSHNKFS 560
           ++ L  NKL       F  L++L  ++L +N  SFKG    S F    L+ ++ S N   
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS-RNLSRLRLAHNHLTGNIPSEFGKLTE 619
                  G   L  LD  +++        + +S RNL  L ++H H        F  L+ 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 620 LNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
           L  L ++ NSF     P + ++   L  L LS  +L    P    SL  +  L++S NNF
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 679 NG--TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL-TALNVLNLQRNSLSGNIP--ST 733
               T P +  N  ++L  SL  N++      E+ +  ++L  LNL +N  +      S 
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSL--NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 269
Query: 734 IQQCKKLYELRLSENFFTGSIPAD 757
           +Q  K   +L +       + P+D
Sbjct: 270 LQWIKDQRQLLVEVERMECATPSD 293

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 76/200 (38%), Gaps = 25/200 (12%)
Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNKFS 560
           +++ L  NKLS      F  L++L L+ L +N  +  LP  +F +LK L  +  + NK  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620
               P+   + L                      NL+ LRL  N L    P  F  LT+L
Sbjct: 99  A--LPIGVFDQLV---------------------NLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
            +L L +N           K   L  L L NN+L          L E+  L L +N    
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 681 TVPAEIGNCSKLLKLSLRGN 700
                  +  KL  L L+ N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
           IP +L    N++ L L HN L    P+ F + ++L  LD  FNS + ++ P+L +   L 
Sbjct: 19  IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSIS-KLEPELCQILPLL 75
Query: 646 HLL-LSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG 704
            +L L +NEL+            + ELDL SN+ +        N   L+KL L  N LS 
Sbjct: 76  KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 9/231 (3%)
Query: 534 SFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS 593
           SFKG    S F    L+ ++ S N          G   L  LD  +++        + +S
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 594 -RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSN 651
            RNL  L ++H H        F  L+ L  L ++ NSF     P + ++   L  L LS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 652 NELTGTIPFWLGSLQEIGELDLSSNNFNG--TVPAEIGNCSKLLKLSLRGNNLSGKIPPE 709
            +L    P    SL  +  L++S NNF    T P +  N  ++L  SL  N++      E
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL--NHIMTSKKQE 537
Query: 710 IGNL-TALNVLNLQRNSLSGNIP--STIQQCKKLYELRLSENFFTGSIPAD 757
           + +  ++L  LNL +N  +      S +Q  K   +L +       + P+D
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 78/196 (39%), Gaps = 4/196 (2%)
Query: 460 GNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN-KLSGSVPLT 518
           GN  S     +    +NL IL L  N L+G   A+      L+Q+ L+DN +L    P T
Sbjct: 40  GNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTT 99
Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSG-SIYPLTGSNSLTALD 576
           FR L  L+ + L     +  L P LF+ L  L+ +    N              +LT L 
Sbjct: 100 FRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLF 158
Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
           L  N              +L RL L  NH+    P  F  L  L  L L  N+ +   A 
Sbjct: 159 LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAE 218
Query: 637 QLSKCAKLAHLLLSNN 652
            L     L +L L++N
Sbjct: 219 VLVPLRSLQYLRLNDN 234

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 158 IGNLTELRELAIAYCQLNGS--IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKF 215
           + NL  LREL +++  +  S    +++ NL HL SL+L  N+   L  EA   C +L+  
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 216 AASNNMLE-GTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIF-DGE 273
             +   L+     S    L  L++LNL+++ L  S       L  L++LNL GN F  G 
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465
Query: 274 I--PSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGS 321
           I   + L  L +LE L LS  +LS       T LK +  + LS N  T S
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 107/260 (41%), Gaps = 51/260 (19%)
Query: 446 ELTNCSGLT--EIDFFGNHFSGSI--------------PETMGKLKNLVILQLRQNDLSG 489
           EL N + L   EID +   ++ +I              P     +  L +L L +NDLS 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 490 PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG---PLPPSLFQL 546
                     +L  +++++N L      TF+  + L  + L +N        L PSLF  
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH- 196
Query: 547 KKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFS---GPIPSELAMSRNLSRLRLAH 603
                 N S+N  S    P+    ++  LD ++NS +   GP+  EL +      L+L H
Sbjct: 197 -----ANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPVNVELTI------LKLQH 241
Query: 604 NHLTG-----NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI 658
           N+LT      N P     L E+   DLS+N     +     K  +L  L +SNN L   +
Sbjct: 242 NNLTDTAWLLNYPG----LVEV---DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293
Query: 659 PFWLGSLQEIGELDLSSNNF 678
             +   +  +  LDLS N+ 
Sbjct: 294 NLYGQPIPTLKVLDLSHNHL 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	970
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-112
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-108
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-101
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-70
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-86
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-85
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-77
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-77
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-54
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-40
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-37
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-36
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  617 bits (1593), Expect = 0.0
 Identities = 249/862 (28%), Positives = 374/862 (43%), Gaps = 120/862 (13%)

Query: 16  LAVALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSS 75
            A     +  +   L+  K  L D   +L +WS+  + C++ GVTC DD   V  ++LSS
Sbjct: 3   QASPSQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSS 59

Query: 76  SGLS---GSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPP 132
             L+    ++S   L+LT LE+L LS++ + G +        +L  L L  NS SG +  
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTT 118

Query: 133 EIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG-NLKHLTSL 191
                                    +G+ + L+ L ++   L+    V  G  L  L  L
Sbjct: 119 ----------------------LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 192 DLQMNKLSGLIPEAI---HGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248
           DL  N +SG          GC EL+  A S N + G +   +    +L+ L++++N+ S 
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST 214

Query: 249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNL 308
            IP  L     L++L++ GN   G+    ++   +L+ L++S N   G I  L   LK+L
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 271

Query: 309 ETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFK 368
           + L L++N FTG IP        +L  L L+ N   G  P     CS L+ L LS N+F 
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 369 GELPR-SLDKLEELTDLLLNNNSFTGSFPPEIGNLS-KLENLFLFDNMITGKIPVEIGK- 425
           GELP  +L K+  L  L L+ N F+G  P  + NLS  L  L L  N  +G I   + + 
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 426 -LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQ 484
              TL  +YL +N  +G IP  L+NCS L  +    N+ SG+IP ++G L  L  L+L  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 485 NDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF 544
           N L G IP  L Y K L+ + L  N L+G +P      + L  I+L NN   G +P  + 
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 545 QLKKLRIINFSHNKFSGSIYP-LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAH 603
           +L+ L I+  S+N FSG+I   L    SL  LDL  N F+G IP+ +          +A 
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAA 567

Query: 604 NHLTGNIPSEFGKLTELNFLDLSFN--SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFW 661
           N + G                 + N   F G  + QL++ +      +++    G     
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL 721
             +   +  LD+S N  +G +P EIG+   L  L+L  N++SG IP E+G+L  LN+   
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI--- 684

Query: 722 QRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP 781
                                                         LDLS N   G IP 
Sbjct: 685 ----------------------------------------------LDLSSNKLDGRIPQ 698

Query: 782 SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLG 841
           ++ +L  L  +++S N L G +P                    GQ    F  FP + FL 
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEM------------------GQ----FETFPPAKFLN 736

Query: 842 NAKLCGPPLLSCSELSGQKVKR 863
           N  LCG PL  C   +      
Sbjct: 737 NPGLCGYPLPRCDPSNADGYAH 758

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  359 bits (923), Expect = e-112
 Identities = 136/679 (20%), Positives = 234/679 (34%), Gaps = 79/679 (11%)

Query: 166 ELAIAYCQLNG--SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLE 223
              +A C       +P ++    ++T L+L  N+L  L         +L       N + 
Sbjct: 5   SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 224 GTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQ 283
              P     L  L++LNL +N LS       +   NL  L+L+ N       +   K   
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 284 LEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL 343
           L  LDLS N LS +      QL+NL+ L+LS+N        +                  
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL----------------- 165

Query: 344 SGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG--- 400
                 ++   SSL++L+LS N  K   P     +  L  L LNN     S   ++    
Sbjct: 166 ------DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 401 NLSKLENLFLFDNMITGKIPVEIGKLQ--TLSAIYLYDNQMSGSIPRELTNCSGLTEIDF 458
             + + NL L ++ ++         L+   L+ + L  N ++            L     
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 459 FGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLT 518
             N+       ++  L N+  L L+++                 + +++   L      +
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFS 324

Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
           F++L  L  + + +N   G        L  L+ ++ S++  S                LT
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR-------------TLT 371

Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ- 637
           N +F     S       L  L L  N ++      F  L  L  LDL  N    ++  Q 
Sbjct: 372 NETFVSLAHS------PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG--TVPAEIGNCSKLLKL 695
                 +  + LS N+           +  +  L L         + P+       L  L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS--------GNIPSTIQQCKKLYELRLSE 747
            L  NN++      +  L  L +L+LQ N+L+        G     ++    L+ L L  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 748 NFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASL 807
           N F          L EL++ +DL  NN +        + + L+ LN+  N +        
Sbjct: 546 NGFDEIPVEVFKDLFELKI-IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 808 GK-LTSLHVLNLSNNHLQG 825
           G    +L  L++  N    
Sbjct: 605 GPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  350 bits (899), Expect = e-108
 Identities = 148/763 (19%), Positives = 240/763 (31%), Gaps = 114/763 (14%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNL 149
            S E  D S   LT  +P +L    N+ +L L  N             ++L  L +G N 
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 150 LWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGC 209
           +    P     L  L+ L + + +L+           +LT L L  N +  +        
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 210 EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNI 269
           + L     S+N L  T   + V L++LQ L L+NN +      EL               
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF------------ 168

Query: 270 FDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFC-- 327
                       + L++L+LS N +          +  L  L L++     S+  K C  
Sbjct: 169 ----------ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 328 LNNSSLQQLILARNKLSGEFP--LELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLL 385
           L N+S++ L L+ ++LS         L+ ++L  LDLS N+       S   L +L    
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 386 LNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR 445
           L  N+    F   +  L  +  L L  +     I                   +      
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS---------------LASLPKIDDF 323

Query: 446 ELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIA 505
                  L  ++   N   G        L NL  L L  +  S                 
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS----------------- 366

Query: 506 LADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP 565
                                L TL N +F             L I+N + NK S     
Sbjct: 367 ---------------------LRTLTNETFVS------LAHSPLHILNLTKNKISKIESD 399

Query: 566 -LTGSNSLTALDLTNNSFSGPIP-SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFL 623
             +    L  LDL  N     +   E     N+  + L++N       + F  +  L  L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 624 DLSFNSFTG--QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
            L   +                L  L LSNN +       L  L+++  LDL  NN    
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-- 517

Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY 741
                          L  +   G     +  L+ L++LNL+ N          +   +L 
Sbjct: 518 --------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 742 ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLK-LERLNISYNQLQ 800
            + L  N       +       L+  L+L KN  +       G   + L  L++ +N   
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKS-LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 801 GQVPASLGKLTSLHVLNLSNNHLQGQL----PLTFSGFPLSSF 839
               +    +  ++  + +   L        P  + GFP+  F
Sbjct: 623 CTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLF 665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  330 bits (847), Expect = e-101
 Identities = 133/638 (20%), Positives = 219/638 (34%), Gaps = 60/638 (9%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
            ++  LNL+ + L    + +F   + L +LD+  N+++ L P    +L  L++L L  N 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            S        F   L  L +  N +             L  L +++  L+ +       L
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
           ++L  L L  NK+  L  E +                            SL+ L L++N 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFA----------------------NSSLKKLELSSNQ 182

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSEL---NKLAQLEELDLSKNNLSGSI--SL 300
           +    P     +  L  L L        +  +L        +  L LS + LS +   + 
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 301 LNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQL 360
           L  +  NL  L LS N         F      L+   L  N +   F   L    +++ L
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 361 DLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIP 420
           +L  +                T   ++  S           L  LE+L + DN I G   
Sbjct: 302 NLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 421 VEIGKLQTLSAIYLYDNQMSGSIPRELT----NCSGLTEIDFFGNHFSGSIPETMGKLKN 476
                L  L  + L ++  S       T      S L  ++   N  S    +    L +
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 477 LVILQLRQNDLSGPIPAS-LGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
           L +L L  N++   +        + + +I L+ NK       +F  +  L  + L   + 
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 536 KG--PLPPSLFQLKKLRIINFSHNKFSGSIYP-LTGSNSLTALDLTNNSFS--------G 584
           K     P     L+ L I++ S+N  +      L G   L  LDL +N+ +        G
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 585 PIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKL 644
                L    +L  L L  N         F  L EL  +DL  N+     A   +    L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 645 AHLLLSNNELTGTIPFWLG-SLQEIGELDLSSNNFNGT 681
             L L  N +T       G + + + ELD+  N F+ T
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  283 bits (727), Expect = 8e-84
 Identities = 113/574 (19%), Positives = 191/574 (33%), Gaps = 51/574 (8%)

Query: 283 QLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNK 342
             E  D S   L+    + +    N+  L L+ N         F    S L  L +  N 
Sbjct: 5   SHEVADCSHLKLT---QVPDDLPTNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNT 60

Query: 343 LSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNL 402
           +S   P    +   L+ L+L  N       ++      LT+L L +NS            
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 403 SKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELT--NCSGLTEIDFFG 460
             L  L L  N ++        +L+ L  + L +N++      EL     S L +++   
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 461 NHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGY---CKRLQQIALADNKLSGSVPL 517
           N      P     +  L  L L    L   +   L        ++ ++L++++LS +   
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 518 TFRFLSELYLITLY--NNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP-LTGSNSLTA 574
           TF  L    L  L    N+       S   L +L      +N         L G  ++  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI 634
           L+L                R+ ++  ++   L       F  L  L  L++  N   G  
Sbjct: 301 LNL---------------KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 635 APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLK 694
           +   +    L +L LSN+  +                 L++  F           S L  
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLR--------------TLTNETFVSL------AHSPLHI 385

Query: 695 LSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP-STIQQCKKLYELRLSENFFTGS 753
           L+L  N +S         L  L VL+L  N +   +     +  + ++E+ LS N +   
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 754 IPADLGRLTELQVILDLSKNNFSG--EIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811
                  +  LQ  L L +         P     L  L  L++S N +       L  L 
Sbjct: 446 TRNSFALVPSLQR-LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 812 SLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKL 845
            L +L+L +N+L         G P+    G + L
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (438), Expect = 6e-45
 Identities = 63/274 (22%), Positives = 101/274 (36%), Gaps = 11/274 (4%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
           + S    D ++   +  +P +L    N++ L L HN L     + F + ++L  LD+ FN
Sbjct: 3   TVSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGN 688
           + +        K   L  L L +NEL+            + EL L SN+           
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 689 CSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQ--QCKKLYELRLS 746
              L+ L L  N LS         L  L  L L  N +       +       L +L LS
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLG---SLLKLERLNISYNQLQGQV 803
            N      P     +  L   L L+       +   L    +   +  L++S +QL    
Sbjct: 180 SNQIKEFSPGCFHAIGRLFG-LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 804 PASLG--KLTSLHVLNLSNNHLQGQLPLTFSGFP 835
             +    K T+L +L+LS N+L      +F+  P
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  321 bits (825), Expect = 3e-98
 Identities = 102/638 (15%), Positives = 204/638 (31%), Gaps = 77/638 (12%)

Query: 224 GTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQ 283
             I   + L +    LN  N S  G      ++    + L++ G          LN   +
Sbjct: 27  EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQ----PGVSLNSNGR 82

Query: 284 LEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKF---CLNNSSLQQLILAR 340
           +  L L     SG +     QL  LE L L  +    +  +        N S +Q    R
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 341 NKLSGEFP--LELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE 398
                 F         S L +  ++ +  +  + +S     + T +   +N+ T      
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA 201

Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDF 458
           +  L+KL   ++ ++    +   E  + +          Q   +   +  N   LT+++ 
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDVEV 256

Query: 459 FGNHFSGSIPETMGKLKNLVILQLRQNDL--------SGPIPASLGYCKRLQQIALADNK 510
           +       +P  +  L  + ++ +  N               A     +++Q I +  N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 511 LSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSN 570
           L                          P+  SL ++KKL ++   +N+  G +       
Sbjct: 317 LKT-----------------------FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353

Query: 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPS--EFGKLTELNFLDLSFN 628
            L +L+L  N  +    +    +  +  L  AHN L   IP+  +   ++ ++ +D S+N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYN 412

Query: 629 SFTG-------QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG- 680
                       + P   K   ++ + LSNN+++        +   +  ++L  N     
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 681 ------TVPAEIGNCSKLLKLSLRGNNLSGKIPPEI--GNLTALNVLNLQRNSLSGNIPS 732
                        N   L  + LR N L+  +  +     L  L  ++L  NS S   P+
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

Query: 733 TIQQCKKLYELRLSE------NFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSL 786
                  L    +        N      P  +     L   L +  N+    +   +   
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ-LQIGSNDIRK-VNEKITP- 587

Query: 787 LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
             +  L+I  N       + +       +  L  +  Q
Sbjct: 588 -NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  309 bits (794), Expect = 7e-94
 Identities = 102/688 (14%), Positives = 191/688 (27%), Gaps = 101/688 (14%)

Query: 30  LLRIKQELVDPTGILENW--SARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFL 87
            L    E +     L+    +      S  G              L   G    +S    
Sbjct: 21  KLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVS--LN 78

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSG----KIPPEIGFLNKLQVL 143
           +   +  L L     +G +P  +GQL  L +L L S+          P  I      +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 144 RIGDNLLWGEIPPHIG--NLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGL 201
           +            +    + ++L +  I       SI          T +    N ++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197

Query: 202 IPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLR 261
                                   +  +++ L  L+   + N+        E     N  
Sbjct: 198 ------------------------VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233

Query: 262 YLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGS 321
           Y              + + L  L ++++        +      L  ++ + ++ N     
Sbjct: 234 YAQQYKT-----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS- 287

Query: 322 IPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFK-GELPRSLDKLEE 380
                             + K   +   +      +Q + +  N+ K   +  SL K+++
Sbjct: 288 ----------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 381 LTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMS 440
           L  L    N   G   P  G+  KL +L L  N IT       G  + +  +    N++ 
Sbjct: 332 LGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 441 G-SIPRELTNCSGLTEIDFFGNHFSG-------SIPETMGKLKNLVILQLRQNDLSGPIP 492
                 +  + S ++ IDF  N            +  T  K  N+  + L  N +S    
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 493 ASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRII 552
                   L  I L  N L+     +                       +      L  I
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSL-----------------KDENENFKNTYLLTSI 493

Query: 553 NFSHNKFSGSIYPLTGSN--SLTALDLTNNSFSGPIPSELAMSRNLSRLRL------AHN 604
           +   NK +        +    L  +DL+ NSFS   P++   S  L    +        N
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552

Query: 605 HLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS 664
                 P        L  L +  N     +  ++     ++ L + +N        ++  
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

Query: 665 LQEIGELDLSSNNFNGTVPAEIGNCSKL 692
             E G   L  +        +I  C  L
Sbjct: 610 YIEAGMYMLFYDK-----TQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  251 bits (644), Expect = 1e-72
 Identities = 72/484 (14%), Positives = 149/484 (30%), Gaps = 46/484 (9%)

Query: 387 NNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE 446
            N S  G       N +  + L    +M   +  V +     ++ + L     SG +P  
Sbjct: 45  KNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA 100

Query: 447 LTNCSGLTEIDFFGNHFSG----SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCK--R 500
           +   + L  +    +          P+ +    +    Q  +                  
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS 560
           L +  +  +    S+  + R   +   I   +N+    +  ++ +L KLR     ++ F 
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219

Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620
                    N     +            +    ++L+ + + +      +P+    L E+
Sbjct: 220 AENICEAWEN----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 621 NFLDLSFNSFT--------GQIAPQLSKCAKLAHLLLSNNEL-TGTIPFWLGSLQEIGEL 671
             ++++ N            Q         K+  + +  N L T  +   L  ++++G L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 672 DLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNI 730
           +   N   G +P   G+  KL  L+L  N ++  IP    G    +  L+   N L   I
Sbjct: 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-I 392

Query: 731 PST--IQQCKKLYELRLSENFFTG-------SIPADLGRLTELQVILDLSKNNFSGEIPP 781
           P+    +    +  +  S N            +     +   +   ++LS N  S     
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS-INLSNNQISKFPKE 451

Query: 782 SLGSLLKLERLNISYNQLQG-------QVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGF 834
              +   L  +N+  N L             +      L  ++L  N L   L   F   
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRAT 510

Query: 835 PLSS 838
            L  
Sbjct: 511 TLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (278), Expect = 3e-25
 Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 6/190 (3%)

Query: 672 DLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN-- 729
           +   + +       + +  ++  LSL G   SG++P  IG LT L VL L  +    N  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 730 --IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVI-LDLSKNNFSGEIPPSLGSL 786
              P  I       + +     +  +      R     +I   ++ +     I  S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 787 LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLC 846
           LK  ++    N +   V  ++ +LT L    + N+    +          S +    K  
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 847 GPPLLSCSEL 856
                +  +L
Sbjct: 242 DLKWDNLKDL 251

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 8e-09
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 13/119 (10%)

Query: 757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQ----VPASLGKLTS 812
             GR+T L     L     SG +P ++G L +LE L +  +  +       P  +    S
Sbjct: 79  SNGRVTGL----SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 813 LHVLNLSNNHLQGQLP-----LTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSN 866
                    H Q           FS         + +       S   L   ++ +LSN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  282 bits (725), Expect = 8e-88
 Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTG--NIPSEFGKLTELNFLDLS 626
           S+ L   D  N ++ G +      +  ++ L L+  +L     IPS    L  LNFL + 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84

Query: 627 -FNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAE 685
             N+  G I P ++K  +L +L +++  ++G IP +L  ++ +  LD S N  +GT+P  
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 686 IGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL-NVLNLQRNSLSGNIPSTIQQCKKLYELR 744
           I +   L+ ++  GN +SG IP   G+ + L   + + RN L+G IP T      L  + 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804
           LS N   G      G     Q  + L+KN+ + ++   +G    L  L++  N++ G +P
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQ-KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 805 ASLGKLTSLHVLNLSNNHLQGQLP--LTFSGFPLSSFLGNAKLCGPPLLSCS 854
             L +L  LH LN+S N+L G++P       F +S++  N  LCG PL +C+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  257 bits (658), Expect = 2e-78
 Identities = 95/312 (30%), Positives = 140/312 (44%), Gaps = 12/312 (3%)

Query: 24  STDSFWLLRIKQELVDPTGILENWSARAHMC--SWHGVTCSDDQK--HVVGLNLSSSGLS 79
             D   LL+IK++L +PT  L +W      C  +W GV C  D +   V  L+LS   L 
Sbjct: 5   PQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 80  GS--ISRDFLNLTSLETLDLSS-NSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF 136
               I     NL  L  L +   N+L G IP  + +L  L  L +   + SG IP  +  
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 137 LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHL-TSLDLQM 195
           +  L  L    N L G +PP I +L  L  +     +++G+IP   G+   L TS+ +  
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 196 NKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELS 255
           N+L+G IP        L     S NMLEG         K+ Q ++LA NSL+  +  ++ 
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241

Query: 256 HLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSD 315
              NL  L+L  N   G +P  L +L  L  L++S NNL G I      L+  +    ++
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYAN 300

Query: 316 NAFTGSIPIKFC 327
           N      P+  C
Sbjct: 301 NKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  235 bits (602), Expect = 2e-70
 Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 6/274 (2%)

Query: 360 LDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSF--PPEIGNLSKLENLFLFD-NMIT 416
            D  + ++ G L  +  +   + +L L+  +    +  P  + NL  L  L++   N + 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 417 GKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKN 476
           G IP  I KL  L  +Y+    +SG+IP  L+    L  +DF  N  SG++P ++  L N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 477 LVILQLRQNDLSGPIPASLGYCKRLQQ-IALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
           LV +    N +SG IP S G   +L   + ++ N+L+G +P TF  L+ L  + L  N  
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 536 KGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN 595
           +G         K  + I+ + N  +  +  +  S +L  LDL NN   G +P  L   + 
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 596 LSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629
           L  L ++ N+L G IP   G L   +    + N 
Sbjct: 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  219 bits (561), Expect = 1e-64
 Identities = 73/280 (26%), Positives = 114/280 (40%), Gaps = 10/280 (3%)

Query: 268 NIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT--QLKNLETLVLSD-NAFTGSIPI 324
             + G +     +  ++  LDLS  NL     + ++   L  L  L +   N   G IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 325 KFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDL 384
                 + L  L +    +SG  P  L +  +L  LD S N+  G LP S+  L  L  +
Sbjct: 96  AIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 385 LLNNNSFTGSFPPEIGNLSKL-ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSI 443
             + N  +G+ P   G+ SKL  ++ +  N +TGKIP     L  L+ + L  N + G  
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213

Query: 444 PRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQ 503
                +     +I    N  +  + + +G  KNL  L LR N + G +P  L   K L  
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 504 IALADNKLSGSVPLTFRFLSELYLITLYNNSF--KGPLPP 541
           + ++ N L G +P          +    NN      PLP 
Sbjct: 273 LNVSFNNLCGEIPQGGNL-QRFDVSAYANNKCLCGSPLPA 311

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  288 bits (738), Expect = 4e-86
 Identities = 116/614 (18%), Positives = 207/614 (33%), Gaps = 61/614 (9%)

Query: 218 SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSE 277
           S N L      S      LQ+L+L+   +          L +L  L L GN         
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95

Query: 278 LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI 337
            + L+ L++L   + NL+   +     LK L+ L ++ N        ++  N ++L+ L 
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 338 LARNKLSGEFPLELLRCSSLQ----QLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG 393
           L+ NK+   +  +L     +      LDLS N      P +  ++  L  L L NN  + 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL 214

Query: 394 SFPPE-IGNLSKLENLFLFDNMITGKIPVE---IGKLQTLSAIYLYDNQMSGSIPRELTN 449
           +     I  L+ LE   L       +  +E      L+ L  + + + +++         
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA--------- 265

Query: 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
                    + +++   I +    L N+    L    +         Y    Q + L + 
Sbjct: 266 ---------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNC 314

Query: 510 KLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGS 569
           K      L  + L  L        S KG    S   L  L  ++ S N            
Sbjct: 315 KFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNG----------- 358

Query: 570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629
                      SF G        + +L  L L+ N +   + S F  L +L  LD   ++
Sbjct: 359 ----------LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 630 FTGQIAPQ-LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-G 687
                          L +L +S+             L  +  L ++ N+F      +I  
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 688 NCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSE 747
               L  L L    L    P    +L++L VLN+  N+         +    L  L  S 
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 748 NFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPS--LGSLLKLERLNISYNQLQGQVPA 805
           N    S   +L         L+L++N+F+        L  +    +L +   +++   P+
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

Query: 806 SLGKLTSLHVLNLS 819
              +   +  LN++
Sbjct: 588 DK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  286 bits (735), Expect = 1e-85
 Identities = 108/625 (17%), Positives = 202/625 (32%), Gaps = 70/625 (11%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNL 149
            S + LDLS N L  L          L++L L               L+ L  L +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 150 LWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGC 209
           +          L+ L++L      L       IG+LK L  L++  N +           
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK------- 140

Query: 210 EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNI 269
                           +P     L +L+ L+L++N +      +L  L  +  LNL    
Sbjct: 141 ----------------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL---- 180

Query: 270 FDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLN 329
                            LDLS N ++        ++  L  L L +N  + ++       
Sbjct: 181 ----------------SLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQG 223

Query: 330 NSSLQQLILARNKLSGEFPLELLR---CSSLQQLDLSDNS------FKGELPRSLDKLEE 380
            + L+   L   +   E  LE         L  L + +        +  ++    + L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 381 LTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMS 440
           ++   L + +               ++L L +        +++  L+      L      
Sbjct: 284 VSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLK-----RLTFTSNK 336

Query: 441 GSIPRELTNCSGLTEIDFFGNH--FSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYC 498
           G       +   L  +D   N   F G   ++     +L  L L  N +   + ++    
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 499 KRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN 557
           ++L+ +    + L        F  L  L  + + +   +         L  L ++  + N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 558 KFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFG 615
            F  +  P   T   +LT LDL+        P+      +L  L ++HN+        + 
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 616 KLTELNFLDLSFNSFTGQIAPQLSKCAK-LAHLLLSNNELTGTIPF--WLGSLQEIGELD 672
            L  L  LD S N        +L      LA L L+ N+   T     +L  +++  +L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 673 LSSNNFNGTVPAEIGNCSKLLKLSL 697
           +         P++      +L L++
Sbjct: 576 VEVERMECATPSDKQG-MPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  156 bits (396), Expect = 6e-40
 Identities = 59/337 (17%), Positives = 99/337 (29%), Gaps = 30/337 (8%)

Query: 530 LYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP-LTGSNSLTALDLTNNSFSGPIPS 588
           L  N  +     S F   +L++++ S  +            + L+ L LT N        
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 589 ELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG-QIAPQLSKCAKLAHL 647
             +   +L +L     +L        G L  L  L+++ N     ++    S    L HL
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 648 LLSNNELTGTIPFWLGSLQEIG----ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLS 703
            LS+N++       L  L ++      LDLS N  N  +        +L KL+LR N  S
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDS 213

Query: 704 GKIPPE-IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT 762
             +    I  L  L V  L                                  + L  L 
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEFRNE------------------GNLEKFDKSALEGLC 255

Query: 763 ELQV-ILDLSKNNFS-GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN 820
            L +    L+  ++   +I      L  +   ++    ++               L L N
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVN 313

Query: 821 NHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELS 857
                   L        +F  N        +    L 
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 1e-27
 Identities = 39/172 (22%), Positives = 60/172 (34%), Gaps = 5/172 (2%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
                  NF   +P  +        L L  N L         +   L VL+L R  +   
Sbjct: 11  TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKL 789
                Q    L  L L+ N            L+ LQ  L   + N +      +G L  L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK-LVAVETNLASLENFPIGHLKTL 126

Query: 790 ERLNISYNQLQG-QVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFL 840
           + LN+++N +Q  ++P     LT+L  L+LS+N +Q               L
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  284 bits (729), Expect = 2e-82
 Identities = 96/665 (14%), Positives = 206/665 (30%), Gaps = 84/665 (12%)

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
           S  V    L    ++ +Q+ + +  I +        +     N        ++ +   + 
Sbjct: 243 SFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW 302

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296
              N   +       V+L +   +  L+L G    G +P  + +L +L+ L    ++ + 
Sbjct: 303 N-FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 297 SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
           S  L   +    +      +         F   +  L    L ++ ++     E+     
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKK 419

Query: 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMIT 416
             ++ L D                    + N  +        I  L+KL+ ++  ++  T
Sbjct: 420 DSRISLKDTQ------------------IGNLTNRITFISKAIQRLTKLQIIYFANSPFT 461

Query: 417 GKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKN 476
                   +            +   +     +N   LT+++ +       +P+ +  L  
Sbjct: 462 YDNIAVDWEDANSD-----YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 477 LVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK 536
           L  L +  N           +                 +        ++ +  +  N+ +
Sbjct: 517 LQSLNIACNRGISAAQLKADW---------------TRLADDEDTGPKIQIFYMGYNNLE 561

Query: 537 G-PLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN 595
             P   SL ++ KL +++  HNK    +     +  LT L L  N          A +  
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 596 LSRLRLAHNHLTGNIPS--EFGKLTELNFLDLSFNSFTGQ-----IAPQLSKCAKLAHLL 648
           +  L  +HN L   IP+      +  +  +D S+N    +      +    K    + + 
Sbjct: 621 VEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 649 LSNNELTGTIPFWLGSLQEIGELDLSSNNF-------NGTVPAEIGNCSKLLKLSLRGNN 701
           LS NE+         +   I  + LS+N                  N   L  + LR N 
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 702 LSGKIPPEI--GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLG 759
           L+  +  +     L  L+ +++  N  S   P+      +L    +              
Sbjct: 740 LTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ----------- 786

Query: 760 RLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLS 819
                    D   N    + P  + +   L +L I  N ++  V   L     L++L+++
Sbjct: 787 --------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIA 835

Query: 820 NNHLQ 824
           +N   
Sbjct: 836 DNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  268 bits (686), Expect = 1e-76
 Identities = 97/650 (14%), Positives = 188/650 (28%), Gaps = 98/650 (15%)

Query: 32  RIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTS 91
           R     ++ T    NW+    +  W            V L+               N   
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPG-------VDLD---------------NNGR 324

Query: 92  LETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLW 151
           +  L L+     G +P  +GQL  L++L   ++S +              +     + + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 152 GEIPP-HIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCE 210
                  +     L    +    +N +   E+  +K  + + L+  ++  L         
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKDTQIGNL--------- 433

Query: 211 ELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIF 270
                    N +   I  +I  L  LQI+  AN+  +           N  Y     N  
Sbjct: 434 --------TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-- 482

Query: 271 DGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNN 330
                   + L  L +++L        +      L  L++L ++ N    +  +K     
Sbjct: 483 ---EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 331 --------SSLQQLILARNKLSG-EFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEEL 381
                     +Q   +  N L        L +   L  LD   N  +  L  +     +L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597

Query: 382 TDLLLNNNSFTGSFPPEIG-NLSKLENLFLFDNMITGKIP--VEIGKLQTLSAIYLYDNQ 438
           TDL L+ N      P +      ++E L    N +   IP       +  + ++    N+
Sbjct: 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNK 655

Query: 439 MSG-----SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS----- 488
           +       S   +       + +    N       E       +  + L  N ++     
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 489 --GPIPASLGYCKRLQQIALADNKLSG-SVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ 545
              P   +      L  I L  NKL+  S       L  L  + +  N F    P     
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN 774

Query: 546 LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH 605
             +L+     H                   D   N      P+ +    +L +L++  N 
Sbjct: 775 SSQLKAFGIRHQ-----------------RDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT 655
           +   +  +     +L  LD++ N         +    +    +L  ++  
Sbjct: 818 IR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.6 bits (235), Expect = 8e-20
 Identities = 27/192 (14%), Positives = 64/192 (33%), Gaps = 6/192 (3%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
             +   + +      ++ N  ++  LSL G    G++P  IG LT L VL+   +S + +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS-----GEIPPSLG 784
                 +          ++              +   + DL ++  +       I     
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 785 SLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAK 844
             LK  ++    N++   +  ++ +LT L ++  +N+               S +    +
Sbjct: 423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 845 LCGPPLLSCSEL 856
                  +  +L
Sbjct: 482 NEELSWSNLKDL 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  268 bits (686), Expect = 8e-79
 Identities = 119/601 (19%), Positives = 209/601 (34%), Gaps = 26/601 (4%)

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296
           +  N  N  L+  IP  L +  +   L    N+      +  ++L  L  LDL++  +  
Sbjct: 15  KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 297 SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
                      L+TLVL+ N               +L+ L   +  +S    + L    +
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFL--FDNM 414
           L+ L L  N             E+L  L   NN+       ++ +L +  NL L    N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 415 ITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCS--GLTEIDFFGNHFSGSIPETMG 472
           I G I           ++     Q    I + L N +   L    F         P    
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 473 KLK--NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL 530
            L   ++  + L+++        +      LQ++ L    LS  +P     LS L  + L
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 531 YNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNN--SFSGPI 586
             N F+     S      L  ++   N     +    L    +L  LDL+++    S   
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 587 PSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP-QLSKCAKLA 645
             +L    +L  L L++N         F +  +L  LDL+F     + A         L 
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 646 HLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIG---NCSKLLKLSLRGNNL 702
            L LS++ L  +       L  +  L+L  N+F      +        +L  L L   +L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 703 SGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT 762
           S        +L  +N ++L  N L+ +    +   K +Y L L+ N  +  +P+ L  L+
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILS 547

Query: 763 ELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNH 822
           + +  ++L +N        S    L+      +  +L+            L  + LS+  
Sbjct: 548 QQRT-INLRQNPLDCT--CSNIYFLEW--YKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602

Query: 823 L 823
           L
Sbjct: 603 L 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  264 bits (678), Expect = 1e-77
 Identities = 119/590 (20%), Positives = 200/590 (33%), Gaps = 44/590 (7%)

Query: 55  SWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQ 114
           S       +  K     N  + GL+  I     N  S E L+ S N L  +  +   +L 
Sbjct: 4   SDQKCIEKEVNKTY---NCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLI 57

Query: 115 NLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQL 174
           NL  L L                ++L  L +  N L       +     L+ L      +
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 175 NGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLK 234
           +    + + N K L SL L  N +S +                                +
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP------------------------TE 153

Query: 235 SLQILNLANNSLSGSIPVELSHLFNLRYLNL-LGNIFDGEIPSELNKLAQLEELDLSKNN 293
            L++L+  NN++      ++S L     L+L L       I       A  + L+     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 294 LSGSI--SLLNTQLKNLETLVLSDNAFTGSIPIKFC-LNNSSLQQLILARNKLSGEFPLE 350
               I   L N+ +++L      D       P  F  L   S++ + L ++         
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 351 LLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFL 410
               S LQ+LDL+      ELP  L  L  L  L+L+ N F         N   L +L +
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 411 FDNMITGKIPVE-IGKLQTLSAIYLYDNQM--SGSIPRELTNCSGLTEIDFFGNHFSGSI 467
             N    ++    +  L+ L  + L  + +  S     +L N S L  ++   N      
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392

Query: 468 PETMGKLKNLVILQLRQNDLSG-PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELY 526
            E   +   L +L L    L      +       L+ + L+ + L  S    F  L  L 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 527 LITLYNNSFKG--PLPPSLFQ-LKKLRIINFSHNKFSGSI-YPLTGSNSLTALDLTNNSF 582
            + L  N F        +  Q L +L I+  S    S    +  T    +  +DL++N  
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 583 SGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG 632
           +      L+  + +  L LA NH++  +PS    L++   ++L  N    
Sbjct: 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  262 bits (671), Expect = 9e-77
 Identities = 114/578 (19%), Positives = 196/578 (33%), Gaps = 43/578 (7%)

Query: 117 RILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNG 176
           +     +   + +IP  +   N  + L    N+L          L  L  L +  CQ+  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
                  +   L +L L  N L  +   A+ G + L+        +       +   K+L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLE--ELDLSKNNL 294
           + L L +N +S     +      L+ L+   N        +++ L Q     L+L+ N++
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 295 SGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNN-SSLQQLILARNKLSG--EFPLEL 351
           +  I          ++L          I      +   SL                  E 
Sbjct: 192 A-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 352 LRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLF 411
           L   S++ ++L  + F      +      L +L L     +   P  +  LS L+ L   
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL--- 306

Query: 412 DNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSI-PET 470
                                 L  N+         +N   LT +   GN     +    
Sbjct: 307 ---------------------VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 471 MGKLKNLVILQLRQNDL--SGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
           +  L+NL  L L  +D+  S      L     LQ + L+ N+        F+   +L L+
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 529 TLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSI-YPLTGSNSLTALDLTNNSFSGPI 586
            L     K     S FQ L  L+++N SH+    S      G  +L  L+L  N F    
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 587 PSELAMSRNLSRLR---LAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAK 643
             +    + L RL    L+   L+      F  L  +N +DLS N  T      LS    
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
           + +L L++N ++  +P  L  L +   ++L  N  + T
Sbjct: 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  249 bits (639), Expect = 3e-72
 Identities = 106/515 (20%), Positives = 173/515 (33%), Gaps = 31/515 (6%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
           +S + L  + N L         R  +L  LDL+          +      L  L+L  N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450
                   +     L++LF     I+    + +   +TL ++YL  N +S     +    
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 451 SGLTEIDFFGNHFSGSIPETMGKLKNL--VILQLRQNDLSGPIPASLGYCKRLQQIALAD 508
             L  +DF  N       E M  L+    + L L  ND++G I          Q +    
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGG 211

Query: 509 NKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTG 568
            +    +    +  +                   +  L      +      S +++    
Sbjct: 212 TQNLLVIFKGLKNST-------------------IQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
             S+ +++L  + F     +       L  L L   HL+  +PS    L+ L  L LS N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311

Query: 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTI-PFWLGSLQEIGELDLSSNNFN--GTVPAE 685
            F        S    L HL +  N     +    L +L+ + ELDLS ++         +
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 686 IGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP-STIQQCKKLYELR 744
           + N S L  L+L  N               L +L+L    L      S  Q    L  L 
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI---PPSLGSLLKLERLNISYNQLQG 801
           LS +    S       L  LQ  L+L  N+F         SL +L +LE L +S+  L  
Sbjct: 432 LSHSLLDISSEQLFDGLPALQH-LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 802 QVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPL 836
               +   L  ++ ++LS+N L        S    
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  169 bits (430), Expect = 3e-44
 Identities = 58/347 (16%), Positives = 114/347 (32%), Gaps = 13/347 (3%)

Query: 497 YCKRLQQIA-LADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFS 555
             K + +     +  L+  +P      +    +    N        +  +L  L  ++ +
Sbjct: 9   IEKEVNKTYNCENLGLN-EIP--GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT 65

Query: 556 HNKFSGSIYP-LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEF 614
             +            + L  L LT N       + L+  + L  L      ++       
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125

Query: 615 GKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLS 674
                L  L L  N  +    P+     KL  L   NN +       + SLQ+   L L+
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 675 -SNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGN--LTALNVLNLQRNSLSGNIP 731
            + N    +     + +    L+  G      I   + N  + +L +   +        P
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

Query: 732 STIQQCKKLY--ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKL 789
           +  +   ++    + L +++F           + LQ  LDL+  + S E+P  L  L  L
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE-LDLTATHLS-ELPSGLVGLSTL 303

Query: 790 ERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQL-PLTFSGFP 835
           ++L +S N+ +     S     SL  L++  N  + +L         
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  163 bits (415), Expect = 2e-42
 Identities = 67/371 (18%), Positives = 120/371 (32%), Gaps = 31/371 (8%)

Query: 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNN 533
             +   L+   N L      +      L  + L   ++      TF+    L  + L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 534 SFKGPLPPSLFQLKKLRIINFSHNKFSGSI-YPLTGSNSLTALDLTNNSFSGPIPSELAM 592
                   +L   K L+ + F     S     PL    +L +L L +N  S     +   
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 593 SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652
           +  L  L   +N +      +   L +   L L+                      L+ N
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN----------------------LNGN 189

Query: 653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCS--KLLKLSLRGNNLSGKIPPEI 710
           ++   I            L+         +   + N +   L   +    +     P   
Sbjct: 190 DIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 711 GNLTALNV--LNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVIL 768
             L  ++V  +NLQ++       +T      L EL L+    +  +P+ L  L+ L+  L
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK-L 306

Query: 769 DLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQV-PASLGKLTSLHVLNLSNNHLQGQL 827
            LS N F      S  +   L  L+I  N  + ++    L  L +L  L+LS++ ++   
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 828 PLTFSGFPLSS 838
                   LS 
Sbjct: 367 CCNLQLRNLSH 377

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (272), Expect = 1e-24
 Identities = 39/195 (20%), Positives = 56/195 (28%), Gaps = 6/195 (3%)

Query: 646 HLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK 705
                N  L   IP  L +      L+ S N               L  L L    +   
Sbjct: 16  TYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 706 IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQ 765
                 +   L+ L L  N L     + +   K L  L   +   +      L     L+
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 766 VILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHV--LNLSNNHL 823
             L L  N+ S    P      KL+ L+   N +       +  L       LNL+ N +
Sbjct: 133 S-LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 824 QGQLPLTFSGFPLSS 838
            G  P  F      S
Sbjct: 192 AGIEPGAFDSAVFQS 206

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  104 bits (261), Expect = 3e-23
 Identities = 32/171 (18%), Positives = 50/171 (29%), Gaps = 4/171 (2%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
             +  +   N  +P  +   +    L    N L          L  L  L+L R  +   
Sbjct: 16  TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKL 789
              T Q   +L  L L+ N         L     L+  L   +   S      L +   L
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH-LFFIQTGISSIDFIPLHNQKTL 131

Query: 790 ERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFL 840
           E L +  N +             L VL+  NN +        S    ++ L
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  251 bits (642), Expect = 1e-72
 Identities = 111/611 (18%), Positives = 202/611 (33%), Gaps = 66/611 (10%)

Query: 224 GTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQ 283
           G++   I ++ ++      +  LS  +P ++    + + ++L  N          +  ++
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 284 LEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL 343
           L+ LDLS+  +          L +L  L+L+ N      P  F    +SL+ L+    KL
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKL 116

Query: 344 SGEFPLELLRCSSLQQLDLSDNSFKG-ELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNL 402
           +      + +  +L++L+++ N     +LP     L  L  + L+ N        ++  L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 403 SKL----ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDF 458
            +      +L +  N I   I  +  +   L  + L  N  S +I               
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIM-------------- 221

Query: 459 FGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLT 518
                       +  L  L + +L   +                     +  L    P  
Sbjct: 222 ---------KTCLQNLAGLHVHRLILGEFKD------------------ERNLEIFEPSI 254

Query: 519 FRFLSELYLITLY--NNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALD 576
              L ++ +        +           L  +  ++ +       +  +       +L 
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLS 313

Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT--GQI 634
           +           +L     L  L L  N  +  I  +   L  L++LDLS N+ +  G  
Sbjct: 314 IIRCQLKQFPTLDL---PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 635 APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAE-IGNCSKLL 693
           +        L HL LS N     +      L+E+  LD   +            +  KLL
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 694 KLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFFTG 752
            L +   N           LT+LN L +  NS   N  S        L  L LS+     
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 753 SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTS 812
                   L  LQ+ L++S NN           L  L  L+ S+N+++           S
Sbjct: 488 ISWGVFDTLHRLQL-LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 813 LHVLNLSNNHL 823
           L   NL+NN +
Sbjct: 547 LAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  248 bits (634), Expect = 1e-71
 Identities = 111/598 (18%), Positives = 189/598 (31%), Gaps = 68/598 (11%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
                  LS  +  D    +S + +DLS N L  L          L+ L L         
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
                 L+ L  L +  N +    P     LT L  L     +L       IG L  L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           L++  N +                           +P+    L +L  ++L+ N +    
Sbjct: 133 LNVAHNFIHSC-----------------------KLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 251 PVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLET 310
             +L  L     +                       LD+S N +   I     Q   L  
Sbjct: 170 VNDLQFLRENPQV--------------------NLSLDMSLNPID-FIQDQAFQGIKLHE 208

Query: 311 LVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQ--------QLDL 362
           L L  N  + +I      N + L    L   +   E  LE+   S ++        +  L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 363 SDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVE 422
           +  +   +       L  ++ + L   S    +  ++    K ++L +    +     ++
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 423 IGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPET--MGKLKNLVIL 480
           +  L++L    L  N+  GSI  +      L+ +D   N  S S   +       +L  L
Sbjct: 327 LPFLKSL---TLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 481 QLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNNSFKGPL 539
            L  N     + A+    + LQ +    + L        F  L +L  + +   + K   
Sbjct: 382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 540 PPSLFQLKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSELAMSRNLS 597
                 L  L  +  + N F  +        + +LT LDL+                 L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT 655
            L ++HN+L     S + +L  L+ LD SFN               LA   L+NN + 
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  237 bits (606), Expect = 1e-67
 Identities = 112/595 (18%), Positives = 186/595 (31%), Gaps = 57/595 (9%)

Query: 152 GEIPPHIGNLTELRELAIAYCQLNG--SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGC 209
           G + P I  +  +       C       +P +I +     ++DL  N L  L   +    
Sbjct: 2   GSLNPCIEVVPNIT----YQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSN- 54

Query: 210 EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNI 269
                                     LQ L+L+   +          L +L  L L GN 
Sbjct: 55  -----------------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 270 FDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLN 329
                P   + L  LE L   +  L+   S    QL  L+ L ++ N         +  N
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 330 NSSLQQLILARNKLSG--EFPLELLR--CSSLQQLDLSDNSFKGELPRSLDKLEELTDLL 385
            ++L  + L+ N +       L+ LR        LD+S N     +     +  +L +L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELT 210

Query: 386 LNNNSFTGSFPPE-IGNLSKLENLFLFDNMITGKIPVEIGKLQTLS--------AIYLYD 436
           L  N  + +     + NL+ L    L       +  +EI +   +            L  
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 437 NQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLG 496
                    +    + ++ +   G        E + K      L + +  L       L 
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDL- 327

Query: 497 YCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNN--SFKGPLPPSLFQLKKLRIINF 554
               L+ + L  NK   S+      L  L  + L  N  SF G    S      LR ++ 
Sbjct: 328 --PFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 555 SHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIP-SELAMSRNLSRLRLAHNHLTGNIPSE 613
           S N          G   L  LD  +++       S       L  L +++ +   +    
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 614 FGKLTELNFLDLSFNSFTGQIAPQ-LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672
           F  LT LN L ++ NSF         +    L  L LS  +L         +L  +  L+
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS 727
           +S NN      +       L  L    N +            +L   NL  NS++
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  221 bits (566), Expect = 3e-62
 Identities = 96/514 (18%), Positives = 164/514 (31%), Gaps = 46/514 (8%)

Query: 360 LDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKI 419
               D     ++P  +       ++ L+ N           N S+L+ L L    I    
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 420 PVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVI 479
                 L  LS + L  N +    P   +  + L  +       +      +G+L  L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 480 LQLRQNDLSG-PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLY----NNS 534
           L +  N +    +PA       L  + L+ N +        +FL E   + L      N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 535 FKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSN--SLTALDLTNNSFSG------PI 586
               +    FQ  KL  +    N  S +I      N   L    L    F          
Sbjct: 193 IDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 587 PSELAMSRNLSR--LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKL 644
           PS +    +++    RL + +   +   +F  L  ++ + L+  S        + K  K 
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKW 309

Query: 645 AHLLLSNNELT-------------------GTIPFWLGSLQEIGELDLSSNNFNGTVPA- 684
             L +   +L                    G+I F   +L  +  LDLS N  + +    
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 685 -EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP-STIQQCKKLYE 742
                 + L  L L  N     +      L  L  L+ Q ++L      S     +KL  
Sbjct: 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 743 LRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPS-LGSLLKLERLNISYNQLQG 801
           L +S              LT L   L ++ N+F      +   +   L  L++S  QL+ 
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNT-LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 802 QVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
                   L  L +LN+S+N+L       ++   
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  148 bits (376), Expect = 2e-37
 Identities = 77/385 (20%), Positives = 123/385 (31%), Gaps = 44/385 (11%)

Query: 489 GPIPASLGYCKRLQQIALADNKLSGSVPLT-FRFLSELYLITLYNNSFKGPLPPSLFQLK 547
           G +   +     +      D KLS  VP         + L     N  K     S     
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPSSTKNIDL---SFNPLKILKSYSFSNFS 56

Query: 548 KLRIINFSHNKFSGSIYP-LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHL 606
           +L+ ++ S  +          G + L+ L LT N      P   +   +L  L      L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 607 TGNIPSEFGKLTELNFLDLSFNSFTG-QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSL 665
                   G+L  L  L+++ N     ++    S    L H+ LS N +       L  L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 666 QEIG----ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPE-IGNLTALNVLN 720
           +E       LD+S N  +  +  +     KL +L+LRGN  S  I    + NL  L+V  
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 721 LQRNSLSGNIPSTIQQCKKLY--------ELRLSENFFTGSIPADLGRLTELQVILDLSK 772
           L            I +   +         E RL+              L  +   + L+ 
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA-MSLAG 294

Query: 773 NNFSGEIPPSLGSLLKLERLNISYNQL-------------------QGQVPASLGKLTSL 813
            +        +    K + L+I   QL                   +G +      L SL
Sbjct: 295 VSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352

Query: 814 HVLNLSNNHLQGQLPLTFSGFPLSS 838
             L+LS N L      ++S    +S
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNS 377

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (357), Expect = 5e-35
 Identities = 53/302 (17%), Positives = 103/302 (34%), Gaps = 16/302 (5%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
            +S   +DL+ N          +    L  L L+   +       +  L  L+ L L+ N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG-TVPAEIG 687
                     S    L +L+    +L     F +G L  + +L+++ N  +   +PA   
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 688 NCSKLLKLSLRGNNLSGKIPPEIGNLTALN----VLNLQRNSLSGNIPSTIQQCKKLYEL 743
           N + L+ + L  N +      ++  L         L++  N +   I     Q  KL+EL
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

Query: 744 RLSENFFTGSIPADLGR-LTELQVILDLSKNNFSGEIPPSLGSL--------LKLERLNI 794
            L  NF + +I     + L  L  +  L    F  E    +           + ++   +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLH-VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 795 SYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCS 854
           +Y             L ++  ++L+   ++    +       S  +   +L   P L   
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

Query: 855 EL 856
            L
Sbjct: 329 FL 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  198 bits (505), Expect = 2e-54
 Identities = 109/595 (18%), Positives = 188/595 (31%), Gaps = 86/595 (14%)

Query: 240 NLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS 299
                +    IP  L    + + L+L  N              +L+ LDLS+  +     
Sbjct: 13  QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 300 LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQ 359
                L +L TL+L+ N    S+ +      SSLQ+L+     L+      +    +L++
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 360 LDLSDNSFK-GELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLF----LFDNM 414
           L+++ N  +  +LP     L  L  L L++N     +  ++  L ++  L     L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 415 ITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKL 474
           +   I     K   L  + L +N  S ++                           +  L
Sbjct: 189 MN-FIQPGAFKEIRLHKLTLRNNFDSLNVM-----------------------KTCIQGL 224

Query: 475 KNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL---Y 531
             L + +L   +                     +  L          L  L +      Y
Sbjct: 225 AGLEVHRLVLGEFRN------------------EGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 532 NNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELA 591
            + +   +      L  +   +         +   + +     L+L N  F      +L 
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKL- 324

Query: 592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN 651
             ++L RL    N            L  L FLDLS N  + +                  
Sbjct: 325 --KSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK------------------ 362

Query: 652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI- 710
               G           +  LDLS N    T+ +      +L  L  + +NL       + 
Sbjct: 363 ----GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 711 GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD-LGRLTELQVILD 769
            +L  L  L++                  L  L+++ N F  +   D    L  L   LD
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLD 476

Query: 770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           LS+       P +  SL  L+ LN++ NQL+        +LTSL  + L  N   
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  186 bits (473), Expect = 3e-50
 Identities = 106/512 (20%), Positives = 174/512 (33%), Gaps = 31/512 (6%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+LS + L    S  F +   L+ LDLS   +  +       L +L  L+L  N      
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLN-GSIPVEIGNLKHLT 189
                 L+ LQ L   +  L       IG+L  L+EL +A+  +    +P    NL +L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 190 SLDLQMNKLSGLIPEAIHGCEELQKFAA----SNNMLEGTIPSSIVLLKSLQILNLANNS 245
            LDL  NK+  +    +    ++         S N +   I         L  L L NN 
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNF 211

Query: 246 LSGSIP-VELSHLFNLRYLNLLGNIFDGEI------PSELNKLAQL--EELDLSKNNLSG 296
            S ++    +  L  L    L+   F  E        S L  L  L  EE  L+  +   
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 297 S-ISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS 355
             I  L   L N+ +  L            +      L+ +     +         L+  
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLK 325

Query: 356 SLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT--GSFPPEIGNLSKLENLFLFDN 413
           SL++L  + N        S   L  L  L L+ N  +  G         + L+ L L  N
Sbjct: 326 SLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 414 MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSGSIPETMG 472
            +   +      L+ L  +    + +          +   L  +D    H   +      
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 473 KLKNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLY 531
            L +L +L++  N              + L  + L+  +L    P  F  LS L ++ + 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502

Query: 532 NNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGS 562
           +N  K  +P  +F  L  L+ I    N +  S
Sbjct: 503 SNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  184 bits (469), Expect = 1e-49
 Identities = 105/520 (20%), Positives = 190/520 (36%), Gaps = 30/520 (5%)

Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLT 189
           IP  +      + L +  N L         +  EL+ L ++ C++         +L HL+
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 190 SLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL-SG 248
           +L L  N +  L   A  G   LQK  A    L       I  LK+L+ LN+A+N + S 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLE----ELDLSKNNLSGSISLLNTQ 304
            +P   S+L NL +L+L  N       ++L  L Q+      LDLS N ++  I     +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 305 LKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS---SLQQLD 361
              L  L L +N  + ++        + L+   L   +   E  LE    S    L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 362 LSDNS------FKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMI 415
           + +        +  ++    + L  ++   L + +       +       ++L L +   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKF 316

Query: 416 TGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGN--HFSGSIPETMGK 473
                +++  L+ L       N+   +      +   L  +D   N   F G   ++   
Sbjct: 317 GQFPTLKLKSLKRL---TFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYN 532
             +L  L L  N +   + ++    ++L+ +    + L        F  L  L  + + +
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 533 NSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSEL 590
              +         L  L ++  + N F  +  P   T   +LT LDL+        P+  
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 591 AMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSF 630
               +L  L +A N L       F +LT L  + L  N +
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  181 bits (461), Expect = 1e-48
 Identities = 109/547 (19%), Positives = 182/547 (33%), Gaps = 56/547 (10%)

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
            IP  +       +LDL  N L  L   +                              L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFS------------------------FPEL 54

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296
           Q+L+L+   +          L +L  L L GN          + L+ L++L   + NL+ 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 297 SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
             +     LK L+ L ++ N        ++  N ++L+ L L+ NK+   +  +L     
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 357 LQ----QLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE-IGNLSKLE----- 406
           +      LDLS N     +     K   L  L L NN  + +     I  L+ LE     
Sbjct: 175 MPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 407 -NLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGS---IPRELTNCSGLTEIDFFGNH 462
              F  +  +       +  L  L+        +      I       + ++        
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 463 FSGSIPET-MGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRF 521
                  +     ++L ++  +               K L+++    NK   +   +   
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNA--FSEVD 345

Query: 522 LSELYLITLYNN--SFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTN 579
           L  L  + L  N  SFKG    S F    L+ ++ S N          G   L  LD  +
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 580 NSFSG-PIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ- 637
           ++       S     RNL  L ++H H        F  L+ L  L ++ NSF     P  
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-GNCSKLLKLS 696
            ++   L  L LS  +L    P    SL  +  L+++SN    +VP  I    + L K+ 
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIW 524

Query: 697 LRGNNLS 703
           L  N   
Sbjct: 525 LHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (412), Expect = 3e-42
 Identities = 85/462 (18%), Positives = 147/462 (31%), Gaps = 43/462 (9%)

Query: 381 LTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMS 440
             +L L+ N           +  +L+ L L    I          L  LS + L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 441 GSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDL-SGPIPASLGYCK 499
                  +  S L ++     + +      +G LK L  L +  N + S  +P       
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 500 RLQQIALADNKLSGSVPLTFRFLSELYLIT----LYNNSFKGPLPPSLFQLKKLRIINFS 555
            L+ + L+ NK+        R L ++ L+     L  N     + P  F+  +L  +   
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208

Query: 556 HNKFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE 613
           +N  S ++    + G   L    L    F                      +L     S 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------------------EGNLEKFDKSA 250

Query: 614 FGKLTELNFLDLSFNS---FTGQIAPQLSKCAKLAHLLLSNNELTGTIPF-WLGSLQEIG 669
              L  L   +        +   I    +    ++   L +  +     F +    Q + 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS-- 727
            ++     F             L +L+   N           +L +L  L+L RN LS  
Sbjct: 311 LVNCKFGQFPT------LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFK 362

Query: 728 GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPS-LGSL 786
           G    +      L  L LS N    ++ ++   L +L+  LD   +N       S   SL
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH-LDFQHSNLKQMSEFSVFLSL 420

Query: 787 LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP 828
             L  L+IS+   +         L+SL VL ++ N  Q    
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  113 bits (285), Expect = 3e-26
 Identities = 67/355 (18%), Positives = 116/355 (32%), Gaps = 27/355 (7%)

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKF 559
            + + L+ N L      +F    EL ++ L     +  +    +Q L  L  +  + N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI 88

Query: 560 SG-SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLT-GNIPSEFGKL 617
              ++   +G +SL  L     + +      +   + L  L +AHN +    +P  F  L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 618 TELNFLDLSFNSFTGQIAPQLSKCAKL----AHLLLSNNELTGTIPFWLGSLQEIGELDL 673
           T L  LDLS N         L    ++      L LS N +   I         + +L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 674 SSNNFNGTVPAEIGN---CSKLLKLSLRGNNLSGKI-PPEIGNLTALNVLNLQRNSLSGN 729
            +N  +  V           ++ +L L      G +   +   L  L  L ++   L+  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 730 ------IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL 783
                 I         +    L                 +   +++     F        
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------ 321

Query: 784 GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSS 838
             L  L+RL  + N+       S   L SL  L+LS N L  +   + S F  +S
Sbjct: 322 LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (277), Expect = 3e-25
 Identities = 59/299 (19%), Positives = 98/299 (32%), Gaps = 17/299 (5%)

Query: 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG 632
                   +F   IP  L    +   L L+ N L       F    EL  LDLS      
Sbjct: 10  ITYQCMELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 633 QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692
                    + L+ L+L+ N +          L  + +L     N        IG+   L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 693 LKLSLRGNNL-SGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKL----YELRLSE 747
            +L++  N + S K+P    NLT L  L+L  N +     + ++   ++      L LS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 748 NFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNI------SYNQLQ 800
           N     I     +   L   L L  N  S  +    +  L  LE   +      +   L+
Sbjct: 187 NPMN-FIQPGAFKEIRLHK-LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 801 GQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQ 859
               ++L  L +L +      +L   L      F   + + +  L    +    + S  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (262), Expect = 2e-23
 Identities = 62/339 (18%), Positives = 104/339 (30%), Gaps = 36/339 (10%)

Query: 530 LYNNSFKGPLPPSLFQLKKLRIINFSHNKFS----GSIYPLTGSNSLTALDLTNNSFSGP 585
           L  N  +     S F   +L++++ S  +      G+   L+    L+ L LT N     
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS---HLSTLILTGNPIQSL 91

Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-GQIAPQLSKCAKL 644
                +   +L +L     +L        G L  L  L+++ N     ++    S    L
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 645 AHLLLSNNELTGTIPFWLGSLQE----IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN 700
            HL LS+N++       L  L +       LDLS N  N  +        +L KL+LR N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNN 210

Query: 701 NLSGKIPPE-IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLG 759
             S  +    I  L  L V  L                      +  ++   G       
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE----------KFDKSALEG------- 253

Query: 760 RLTELQVI-LDLSKNNFSG-EIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLN 817
            L  L +    L+  ++   +I      L  +   ++    ++     S         L 
Sbjct: 254 -LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLE 310

Query: 818 LSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSEL 856
           L N        L        +F  N        +    L
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  193 bits (492), Expect = 1e-53
 Identities = 110/500 (22%), Positives = 194/500 (38%), Gaps = 60/500 (12%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
            L       L   ++T  +      L  +  L              + +LN L  +   +
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSN 77

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
           N L    P  + NLT+L ++ +   Q+    P  + NL +LT L L  N+++ + P    
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP---- 129

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
                                 +  L +L  L L++N++S      LS L +L+ L+   
Sbjct: 130 ----------------------LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN 165

Query: 268 NIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFC 327
            + D      L  L  LE LD+S N +S    L   +L NLE+L+ ++N  +   P+   
Sbjct: 166 QVTD---LKPLANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQISDITPLG-- 218

Query: 328 LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLN 387
              ++L +L L  N+L       L   ++L  LDL++N      P  L  L +LT+L L 
Sbjct: 219 -ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273

Query: 388 NNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPREL 447
            N  +      +  L+ L NL L +N +    P  I  L+ L+ + LY N +S   P  +
Sbjct: 274 ANQISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327

Query: 448 TNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALA 507
           ++ + L  + F+ N  S     ++  L N+  L    N +S   P  L    R+ Q+ L 
Sbjct: 328 SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383

Query: 508 DNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLT 567
           D   + +       +S    +     +     P ++         + + N  S +     
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTNEVSY 441

Query: 568 GSNSLTALDLTNNSFSGPIP 587
             +    +     +FSG + 
Sbjct: 442 TFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  190 bits (485), Expect = 1e-52
 Identities = 100/468 (21%), Positives = 196/468 (41%), Gaps = 36/468 (7%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
              +   L  + ++ ++S    +L  + TL      +  +    +  L NL  +   +N 
Sbjct: 24  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ 79

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            +   P  +  L KL  + + +N +    P  + NLT L  L +   Q+    P  + NL
Sbjct: 80  LTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNL 133

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
            +L  L+L  N +S +   A+ G   LQ+ +  N + +      +  L +L+ L++++N 
Sbjct: 134 TNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNK 188

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL 305
           +S      L+ L NL  L    N      P  L  L  L+EL L+ N L    +L +  L
Sbjct: 189 VSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS--L 242

Query: 306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365
            NL  L L++N  +   P+      + L +L L  N++S   PL  L  ++L  L+L++N
Sbjct: 243 TNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNISPLAGL--TALTNLELNEN 297

Query: 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK 425
             +      +  L+ LT L L  N+ +      + +L+KL+ LF ++N ++      +  
Sbjct: 298 QLED--ISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSD--VSSLAN 351

Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
           L  ++ +    NQ+S   P  L N + +T++      ++ +       +     ++    
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNN 533
            L    PA++       +  +  N  S +  +++ F   + +      
Sbjct: 410 ALI--APATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  187 bits (477), Expect = 1e-51
 Identities = 105/466 (22%), Positives = 186/466 (39%), Gaps = 39/466 (8%)

Query: 336 LILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSF 395
            I     ++  F    L  +   +  L   +    +      L+++T L  +        
Sbjct: 7   TITQDTPINQIFTDTAL--AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-- 60

Query: 396 PPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTE 455
              +  L+ L  +   +N +T   P  +  L  L  I + +NQ++   P  L N + LT 
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
           +  F N  +   P  +  L NL  L+L  N +S      L     LQQ++   N+++   
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLK 171

Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
           PL    L+ L  + + +N         L +L  L  +  ++N+ S  I PL    +L  L
Sbjct: 172 PLAN--LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS-DITPLGILTNLDEL 226

Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
            L  N         LA   NL+ L LA+N ++   P     LT+L  L L  N  +    
Sbjct: 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
             L+    L +L L+ N+L    P  + +L+ +  L L  NN +   P  + + +KL +L
Sbjct: 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755
               N +S      + NLT +N L+   N +S   P  +    ++ +L L++  +T +  
Sbjct: 337 FFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

Query: 756 ADLGRLTELQVILDLSKNNFSGEIPPS-LGSLLKLERLNISYNQLQ 800
                ++    I +  KN     I P+ +         +I++N   
Sbjct: 393 NYKANVS----IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  185 bits (472), Expect = 8e-51
 Identities = 114/503 (22%), Positives = 190/503 (37%), Gaps = 62/503 (12%)

Query: 182 IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241
              L       L    ++  + +     +++    A    +       +  L +L  +N 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 242 ANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLL 301
           +NN L+   P  L +L  L  + +  N      P  L  L  L  L L  N ++    L 
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL- 130

Query: 302 NTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLD 361
              L NL  L LS N  +    +      +SLQQL    N+++   PL  L  ++L++LD
Sbjct: 131 -KNLTNLNRLELSSNTISDISALS---GLTSLQQLSF-GNQVTDLKPLANL--TTLERLD 183

Query: 362 LSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPV 421
           +S N         L KL  L  L+  NN  +      +G L+ L+ L L  N +      
Sbjct: 184 ISSNKVSD--ISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKD--IG 237

Query: 422 EIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQ 481
            +  L  L+ + L +NQ+S   P  L+  + LTE+    N  S   P  +  L  L  L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293

Query: 482 LRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPP 541
           L +N L    P  +   K L  + L  N +S   P++   L++L  +  YNN        
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS--LTKLQRLFFYNNKVSDV--S 347

Query: 542 SLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRL 601
           SL  L  +  ++  HN+ S  + PL     +T L L + +++    +      N+S    
Sbjct: 348 SLANLTNINWLSAGHNQIS-DLTPLANLTRITQLGLNDQAWTNAPVNYK---ANVSIPNT 403

Query: 602 AHNHLTGNI-PSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPF 660
             N     I P+           D+++N                  L    NE++ T   
Sbjct: 404 VKNVTGALIAPATISDGGSYTEPDITWN------------------LPSYTNEVSYT--- 442

Query: 661 WLGSLQEIGELDLSSNNFNGTVP 683
                 +   +   +  F+GTV 
Sbjct: 443 ----FSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  179 bits (456), Expect = 1e-48
 Identities = 112/505 (22%), Positives = 184/505 (36%), Gaps = 61/505 (12%)

Query: 276 SELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQ 335
                LA+  +  L K N++ ++S   T L  + TL            +++    ++L Q
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSIDGVEYL---NNLTQ 72

Query: 336 LILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSF 395
           +  + N+L+   PL+ L  + L  + +++N      P  L  L  LT L L NN  T   
Sbjct: 73  INFSNNQLTDITPLKNL--TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-- 126

Query: 396 PPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTE 455
              + NL+ L  L L  N I+      +  L +L  +    NQ++   P  L N + L  
Sbjct: 127 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLER 181

Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
           +D   N  S      + KL NL  L    N +S   P  LG    L +++L  N+L    
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-- 235

Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
             T   L+ L  + L NN         L  L KL  +    N+ S +I PL G  +LT L
Sbjct: 236 IGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS-NISPLAGLTALTNL 292

Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
           +L  N      P  ++  +NL+ L L  N+++   P     LT+L  L    N  +    
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--V 346

Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
             L+    +  L   +N+++   P  L +L  I +L L+   +    P        +   
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT-NAPVNYKANVSIPNT 403

Query: 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755
                      P  I +  +    ++  N  S          +  Y              
Sbjct: 404 VKNVTGAL-IAPATISDGGSYTEPDITWNLPSYT-------NEVSYTFSQPVT------- 448

Query: 756 ADLGRLTELQVILDLSKNNFSGEIP 780
                       +      FSG + 
Sbjct: 449 ------------IGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  178 bits (454), Expect = 2e-48
 Identities = 103/451 (22%), Positives = 169/451 (37%), Gaps = 35/451 (7%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
             V  L     G+  SI      L +L  ++ S+N LT + P  L  L  L  +L+ +N 
Sbjct: 46  DQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 101

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            +      +  L  L  L + +N +       + NLT L  L ++   ++      +  L
Sbjct: 102 IAD--ITPLANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGL 155

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
             L  L    N+++ L P  +     L++   S+N +  +  S +  L +L+ L   NN 
Sbjct: 156 TSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQ 210

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL 305
           +S   P  L  L NL  L+L GN         L  L  L +LDL+ N +S    L    L
Sbjct: 211 ISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSG--L 264

Query: 306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365
             L  L L  N  +   P+      ++L  L L  N+L    P+  L   +L  L L  N
Sbjct: 265 TKLTELKLGANQISNISPLA---GLTALTNLELNENQLEDISPISNL--KNLTYLTLYFN 319

Query: 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK 425
           +     P  +  L +L  L   NN  +      + NL+ +  L    N I+   P  +  
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
           L  ++ + L D   + +      N S    +       +   P T+    +     +  N
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVK--NVTGALIAPATISDGGSYTEPDITWN 431

Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVP 516
             S     S  +  +   I       SG+V 
Sbjct: 432 LPSYTNEVSYTF-SQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  177 bits (451), Expect = 5e-48
 Identities = 94/440 (21%), Positives = 164/440 (37%), Gaps = 35/440 (7%)

Query: 382 TDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG 441
           +  +  +      F      L++     L    +T  +      L  ++ +         
Sbjct: 5   SATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG--I 58

Query: 442 SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL 501
                +   + LT+I+F  N  +   P  +  L  LV + +  N ++   P  L     L
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSG 561
             + L +N+++   PL    L+ L  + L +N+       +L  L  L+ ++F +     
Sbjct: 115 TGLTLFNNQITDIDPLKN--LTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTD- 169

Query: 562 SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELN 621
            + PL    +L  LD+++N  S    S LA   NL  L   +N ++   P   G LT L+
Sbjct: 170 -LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLD 224

Query: 622 FLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
            L L+ N         L+    L  L L+NN+++   P  L  L ++ EL L +N  +  
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY 741
            P  +   + L  L L  N L       I NL  L  L L  N++S   P  +    KL 
Sbjct: 281 SP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334

Query: 742 ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG 801
            L    N  +      L  LT +   L    N  S   P  L +L ++ +L ++      
Sbjct: 335 RLFFYNNKVSDVSS--LANLTNINW-LSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 802 QVPASLGKLTSLHVLNLSNN 821
                   ++  + +     
Sbjct: 390 APVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  176 bits (448), Expect = 9e-48
 Identities = 101/425 (23%), Positives = 162/425 (38%), Gaps = 33/425 (7%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           +N S++ L+        NLT L  + +++N +  + P  L  L NL  L L++N  +   
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-- 126

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
              +  L  L  L +  N +       +  LT L++L         +    + NL  L  
Sbjct: 127 IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL---SFGNQVTDLKPLANLTTLER 181

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           LD+  NK+S +    +     L+   A+NN +    P  + +L +L  L+L  N L    
Sbjct: 182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-- 235

Query: 251 PVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLET 310
              L+ L NL  L+L  N      P  L+ L +L EL L  N +S    L    L  L  
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTN 291

Query: 311 LVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE 370
           L L++N      PI    N  +L  L L  N +S   P+  L  + LQ+L   +N     
Sbjct: 292 LELNENQLEDISPIS---NLKNLTYLTLYFNNISDISPVSSL--TKLQRLFFYNNKVSD- 345

Query: 371 LPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLS 430
              SL  L  +  L   +N  +      + NL+++  L L D   T         +   +
Sbjct: 346 -VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 431 AIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGP 490
            +      +    P  +++    TE D   N  S    E        V +       SG 
Sbjct: 403 TVKNVTGAL--IAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGT 459

Query: 491 IPASL 495
           +   L
Sbjct: 460 VTQPL 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  195 bits (496), Expect = 1e-51
 Identities = 135/757 (17%), Positives = 238/757 (31%), Gaps = 114/757 (15%)

Query: 169 IAYCQLNG--SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTI 226
           IA+ +      +P     L     L L  N +  +   +    E+LQ     +     TI
Sbjct: 8   IAFYRFCNLTQVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 227 PSSIVL-LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEI--PSELNKLAQ 283
                  L +L+IL+L ++ +    P     LF+L  L L        +        L  
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 284 LEELDLSKNNLSG-SISLLNTQLKNLETLVLSDNAFTGSIPIKFC-LNNSSLQQLILARN 341
           L  LDLSKN +    +     +L +L+++  S N        +   L   +L    LA N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 342 KLSGEFPLELLRCS------SLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSF 395
            L     ++  +C        L+ LD+S N +  ++  +             +N+ + S 
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF------------SNAISKSQ 232

Query: 396 PPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTE 455
              +     +       + I          L   S                      +  
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS----------------------VRH 270

Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
           +D                LK+L +L L  N ++     +      LQ + L+ N L    
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
              F  L ++  I L  N        +   L+KL+ ++   N  +     +    S+  +
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFIPSIPDI 386

Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTG-NIPSEFGKLTELNFLDLSFNSFTGQI 634
            L+ N     +P     +   + + L+ N L   +I     ++  L  L L+ N F+   
Sbjct: 387 FLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 635 APQL-SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL 693
             Q  S+   L  L L  N            LQ   E +L  + F G         S L 
Sbjct: 443 GDQTPSENPSLEQLFLGEN-----------MLQLAWETELCWDVFEG--------LSHLQ 483

Query: 694 KLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752
            L L  N L+  +PP +  +LTAL  L+L  N L+    + +     L  L +S N    
Sbjct: 484 VLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA 540

Query: 753 SIPADLGRLTELQVILDLSKNNFSGEIPPS-LGSLLKLERLNISYNQLQGQVPASLGKLT 811
             P     L+     LD++ N F  E   S   + L    + I+                
Sbjct: 541 PNPDVFVSLSV----LDITHNKFICECELSTFINWLNHTNVTIAGPPAD----------- 585

Query: 812 SLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVV 871
              +  +  +   G    + S            L     + C+              + +
Sbjct: 586 ---IYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCT------------VTLTL 630

Query: 872 IITAILFTSAVICLIMLYIMLRIWLNWRQVSISNSDN 908
            +  IL  +       +       L ++        +
Sbjct: 631 FLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPD 667

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  193 bits (493), Expect = 2e-51
 Identities = 137/639 (21%), Positives = 205/639 (32%), Gaps = 98/639 (15%)

Query: 60  TCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRIL 119
           +CS D +           L+  +      L + E L LS N +  +  S    L+ L++L
Sbjct: 1   SCSFDGRIA---FYRFCNLT-QV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLL 53

Query: 120 LLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIP 179
            L S      I  E                                              
Sbjct: 54  ELGSQYTPLTIDKEA--------------------------------------------- 68

Query: 180 VEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVL--LKSLQ 237
               NL +L  LDL  +K+  L P+A  G   L +       L   +        LK+L 
Sbjct: 69  --FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 238 ILNLANNSLSG-SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQ--LEELDLSKNNL 294
            L+L+ N +    +      L +L+ ++   N        EL  L    L    L+ N+L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186

Query: 295 SGSISLLNTQLKN------LETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFP 348
              +S+   +  N      LE L +S N +T  I   F    S  Q   L          
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH----- 241

Query: 349 LELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENL 408
           +           D   N+F G    S      +  L L++             L  L+ L
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSS------VRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 409 FLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIP 468
            L  N I          L  L  + L  N +             +  ID   NH +    
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 469 ETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
           +T   L+ L  L LR N L+     ++ +   +  I L+ NKL     +         LI
Sbjct: 356 QTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLI 406

Query: 529 TLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFSGP 585
            L  N  +          +  L+I+  + N+FS        + + SL  L L  N     
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 586 IPSELAMS-----RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK 640
             +EL         +L  L L HN+L    P  F  LT L  L L+ N  T         
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--LSHNDL 524

Query: 641 CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
            A L  L +S N+L    P    SL  +   D++ N F 
Sbjct: 525 PANLEILDISRNQLLAPNPDVFVSLSVL---DITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  176 bits (448), Expect = 1e-45
 Identities = 119/557 (21%), Positives = 193/557 (34%), Gaps = 61/557 (10%)

Query: 71  LNLSSSGLSGSISRD-FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK 129
           L L S     +I ++ F NL +L  LDL S+ +  L P     L +L  L LY    S  
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 130 IPPEIGF--LNKLQVLRIGDNLLWG-EIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL- 185
           +  +  F  L  L  L +  N +    + P  G L  L+ +  +  Q+      E+  L 
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 186 -KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
            K L+   L  N L   +      C    +                     L+IL+++ N
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFR------------------NMVLEILDVSGN 214

Query: 245 SLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG--SISLLN 302
             +  I                 N         L     +       +N+      +   
Sbjct: 215 GWTVDIT------------GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 303 TQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDL 362
               ++  L LS      S+  +       L+ L LA NK++           +LQ L+L
Sbjct: 263 LARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 363 SDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVE 422
           S N        +   L ++  + L  N            L KL+ L L DN +T      
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----T 376

Query: 423 IGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG-SIPETMGKLKNLVILQ 481
           I  + ++  I+L  N++       LT       I    N      I   + ++ +L IL 
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 482 LRQNDLSG-PIPASLGYCKRLQQIALADNKLSGSV-----PLTFRFLSELYLITLYNNSF 535
           L QN  S      +      L+Q+ L +N L  +         F  LS L ++ L +N  
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 536 KGPLPPSLFQ-LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSR 594
              LPP +F  L  LR ++ + N+ +  +       +L  LD++ N    P P       
Sbjct: 493 NS-LPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVF---V 547

Query: 595 NLSRLRLAHNHLTGNIP 611
           +LS L + HN       
Sbjct: 548 SLSVLDITHNKFICECE 564

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  173 bits (442), Expect = 5e-48
 Identities = 80/373 (21%), Positives = 138/373 (36%), Gaps = 28/373 (7%)

Query: 92  LETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLW 151
             TL      +  + P     L      +L   S +         L  +  L +    + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV- 56

Query: 152 GEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
                 I  LT L  L +   Q+    P  + NL  LT+L +  NK++     A+     
Sbjct: 57  -ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFD 271
           L++   + + +     S +  L  +  LNL  N     +   LS++  L YL +  +   
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 272 GEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNS 331
               + +  L  L  L L+ N +     L    L +L       N  T   P+    N +
Sbjct: 169 D--VTPIANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITPVA---NMT 221

Query: 332 SLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
            L  L +  NK++   PL     S L  L++  N        ++  L +L  L + +N  
Sbjct: 222 RLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 392 TGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCS 451
           +      + NLS+L +LFL +N +  +    IG L  L+ ++L  N ++   P  L + S
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333

Query: 452 GLTEIDFFGNHFS 464
            +   DF      
Sbjct: 334 KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  160 bits (408), Expect = 2e-43
 Identities = 76/373 (20%), Positives = 141/373 (37%), Gaps = 27/373 (7%)

Query: 452 GLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKL 511
           G   +       +   P     L   +   L++  ++  +       + + ++ +A  K+
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 512 SGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNS 571
           +    + +  L+ L  + L  N         L  L KL  +    NK +  I  L    +
Sbjct: 57  ASIQGIEY--LTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKIT-DISALQNLTN 111

Query: 572 LTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT 631
           L  L L  ++ S   P  LA    +  L L  NH   ++ S    +T LN+L ++ +   
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK 168

Query: 632 GQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSK 691
                 ++    L  L L+ N++    P  L SL  +       N      P  + N ++
Sbjct: 169 D--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751
           L  L +  N ++   P  + NL+ L  L +  N +S    + ++   KL  L +  N  +
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278

Query: 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811
                 L  L++L   L L+ N    E    +G L  L  L +S N +    P  L  L+
Sbjct: 279 DISV--LNNLSQLN-SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333

Query: 812 SLHVLNLSNNHLQ 824
            +   + +N  ++
Sbjct: 334 KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (366), Expect = 6e-38
 Identities = 73/335 (21%), Positives = 131/335 (39%), Gaps = 25/335 (7%)

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS 560
              +A     ++   P     L+E     L   S    +     +L+ +  +  +  K +
Sbjct: 2   AATLATLPAPINQIFPDAD--LAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620
            SI  +    +L  L+L  N  +   P  L+    L+ L +  N +T    S    LT L
Sbjct: 58  -SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNL 112

Query: 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
             L L+ ++ +      L+   K+  L L  N     +   L ++  +  L ++ +    
Sbjct: 113 RELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD 169

Query: 681 TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKL 740
             P  I N + L  LSL  N +       + +LT+L+      N ++   P  +    +L
Sbjct: 170 VTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 741 YELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ 800
             L++  N  T   P  L  L++L   L++  N  S     ++  L KL+ LN+  NQ+ 
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTW-LEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278

Query: 801 GQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
               + L  L+ L+ L L+NN L  +      G  
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (338), Expect = 3e-34
 Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 17/246 (6%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L L+   +S        NLT + +L+L +N       S L  +  L  L +  +      
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD-- 169

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
              I  L  L  L +  N +    P  + +LT L        Q+    P  + N+  L S
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           L +  NK++ L P  +    +L       N +  +  +++  L  L++LN+ +N +S   
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDIS 281

Query: 251 PVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLET 310
              L++L  L  L L  N    E    +  L  L  L LS+N+++    L    L  +++
Sbjct: 282 V--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDS 337

Query: 311 LVLSDN 316
              ++ 
Sbjct: 338 ADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.8 bits (216), Expect = 2e-18
 Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
                + ++        N+T L +L + +N +T L P  L  L  L  L + +N  S   
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-- 257

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
              +  L KL++L +G N +       + NL++L  L +   QL       IG L +LT+
Sbjct: 258 INAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLE 223
           L L  N ++ + P  +    ++     +N +++
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  174 bits (442), Expect = 2e-46
 Identities = 104/576 (18%), Positives = 187/576 (32%), Gaps = 91/576 (15%)

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
           SIP  +     + SLDL  NK++ +    +  C  LQ     ++ +      +   L SL
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSKNNLS 295
           + L+L++N LS         L +L+YLNL+GN      + S    L  L+ L +      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 296 GSISLLN-TQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRC 354
             I  ++   L +L  L +   +            + SL+ +                  
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRN-------YQSQSLKSI------------------ 171

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNM 414
             +  L L  +     L    D L  +  L L + +        +        +      
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 415 ITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKL 474
            +        +L  L    L  +++         +C+     DF  +       + + +L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSES-----DVVSEL 280

Query: 475 KNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNS 534
             +  + +R+  +                       L   +   +  L ++  IT+ N+ 
Sbjct: 281 GKVETVTIRRLHIP-------------------QFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 535 FKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSR 594
                      LK L  ++ S N              +    L N++  G  PS      
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENL-------------MVEEYLKNSACKGAWPS------ 362

Query: 595 NLSRLRLAHNHLT--GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652
            L  L L+ NHL            L  L  LD+S N+F   +        K+  L LS+ 
Sbjct: 363 -LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGN 712
            +           Q +  LD+S+NN + +    +     L +L +  N L     P+   
Sbjct: 421 GIRV---VKTCIPQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK--TLPDASL 471

Query: 713 LTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748
              L V+ + RN L         +   L ++ L  N
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  172 bits (438), Expect = 8e-46
 Identities = 94/520 (18%), Positives = 173/520 (33%), Gaps = 29/520 (5%)

Query: 313 LSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELP 372
               +FT SIP       ++++ L L+ NK++     +L  C++LQ L L  +       
Sbjct: 12  GRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 373 RSLDKLEELTDLLLNNNSFTGSFPPE-IGNLSKLENLFLFDNMITG-KIPVEIGKLQTLS 430
            +   L  L  L L++N  + S      G LS L+ L L  N      +      L  L 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 431 AIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSG 489
            + + + +    I R      + L E++           +++  ++++  L L  ++ + 
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 490 PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKL 549
            +         ++ + L D  L+               +             S  +L KL
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 550 RIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN 609
                  ++        T +         ++  S     E      + RL +   +L  +
Sbjct: 247 LRYILELSEVE--FDDCTLNGLGDFNPSESDVVSELGKVETV---TIRRLHIPQFYLFYD 301

Query: 610 IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFW---LGSLQ 666
           + + +  L ++  + +  +               L  L LS N +           G+  
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 667 EIGELDLSSNNFN--GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724
            +  L LS N+          +     L  L +  N     +P        +  LNL   
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 725 SLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLG 784
            +   + + I Q   L  L +S N    S    L RL EL     +S+N     +P +  
Sbjct: 421 GIR-VVKTCIPQ--TLEVLDVSNNNLD-SFSLFLPRLQEL----YISRNKLK-TLPDA-S 470

Query: 785 SLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
               L  + IS NQL+        +LTSL  + L  N   
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  172 bits (437), Expect = 1e-45
 Identities = 98/466 (21%), Positives = 174/466 (37%), Gaps = 36/466 (7%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSG-K 129
           L L SS ++      F +L SLE LDLS N L+ L  S  G L +L+ L L  N +    
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPH-IGNLTELRELAIAYCQLNGSIPVEIGNLKHL 188
           +      L  LQ LRIG+   + EI       LT L EL I    L       + +++ +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS- 247
             L L +++ + L+         ++     +  L     S + + +    +       S 
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 248 ------GSIPVELSHLFNLRYLNLLGNIFDGEIPSELN-----------KLAQLEELDLS 290
                   +   L ++  L  +       +G      +           +   +  L + 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 291 KNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEF--- 347
           +  L   +S + + L+ ++ + + ++     +P  F  +  SL+ L L+ N +  E+   
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 348 PLELLRCSSLQQLDLSDNSFK--GELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKL 405
                   SLQ L LS N  +   +    L  L+ LT L ++ N+F    P       K+
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 406 ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG 465
             L L    I   +   I   QTL  + + +N +  S    L     L E+    N    
Sbjct: 413 RFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK- 464

Query: 466 SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKL 511
           ++P+       L+++++ +N L             LQ+I L  N  
Sbjct: 465 TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  165 bits (419), Expect = 2e-43
 Identities = 87/507 (17%), Positives = 169/507 (33%), Gaps = 25/507 (4%)

Query: 153 EIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEEL 212
            IP  +     ++ L +++ ++      ++    +L  L L+ ++++ +  +A +    L
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 213 QKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG-SIPVELSHLFNLRYLNLLGNIFD 271
           +    S+N L     S    L SL+ LNL  N      +     +L NL+ L +      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 272 GEIPSE-LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNN 330
            EI       L  L EL++   +L    S     ++++  L L  +     +   F    
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADIL 195

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
           SS++ L L    L+      L        +             S ++L +L   +L  + 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450
                  E  + +         +       +   +  T+  +++    +   +    +  
Sbjct: 256 V------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS---GPIPASLGYCKRLQQIALA 507
             +  I    +            LK+L  L L +N +        A  G    LQ + L+
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 508 DNKLS--GSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP 565
            N L            L  L  + +  N+F  P+P S    +K+R +N S       +  
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI--RVVK 426

Query: 566 LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDL 625
                +L  LD++NN+        L     L  L ++ N L     +       L  + +
Sbjct: 427 TCIPQTLEVLDVSNNNLDS-FSLFL---PRLQELYISRNKLKTLPDASL--FPVLLVMKI 480

Query: 626 SFNSFTGQIAPQLSKCAKLAHLLLSNN 652
           S N           +   L  + L  N
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (366), Expect = 2e-36
 Identities = 82/478 (17%), Positives = 154/478 (32%), Gaps = 44/478 (9%)

Query: 354 CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN 413
           C +    D    SF   +P  L     +  L L+ N  T     ++   + L+ L L  +
Sbjct: 4   CDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 414 MITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG-SIPETM 471
            I   I  +    L +L  + L DN +S          S L  ++  GN +    +    
Sbjct: 61  RIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 472 GKLKNLVILQL-RQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL 530
             L NL  L++      S            L ++ +    L      + + + +++ +TL
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 531 YNNSFKGPLPPSLFQLKKLRIINFSHNKFSG-SIYPLTGSNSLTALDLTNNSFSGPIPSE 589
           + +     L      L  +R +       +     PL      + +       S      
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 590 LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLL 649
                 L R  L  + +      EF   T     D + +           +   +  L +
Sbjct: 240 FNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 650 SNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPE 709
               L   +      L+++  + + ++       +   +   L  L L  N +  +    
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 710 ---IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQV 766
               G   +L  L L +N L  ++  T +    L  L                       
Sbjct: 354 SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLT---------------------- 390

Query: 767 ILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
            LD+S+N F   +P S     K+  LN+S   ++  V   +    +L VL++SNN+L 
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 3e-27
 Identities = 58/396 (14%), Positives = 122/396 (30%), Gaps = 39/396 (9%)

Query: 449 NCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALAD 508
           +C      D     F+ SIP  +     +  L L  N ++      L  C  LQ + L  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 509 NKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFS--GSIYP 565
           ++++      F  L  L  + L +N     L  S F  L  L+ +N   N +   G    
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 566 LTGSNSLTALDLT-NNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
                +L  L +    +FS     + A   +L+ L +    L          + +++ L 
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
           L  +     +       + + +L L +  L       L   +    +   +   +     
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR 744
                 KLL+  L  + +              +         + +    + +  K+  + 
Sbjct: 239 SFNELLKLLRYILELSEVE-----------FDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804
           +                      L + +     ++      L K++R+ +  +++     
Sbjct: 288 IRR--------------------LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 805 ASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFL 840
           +    L SL  L+LS N +  +     +       L
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.1 bits (229), Expect = 2e-19
 Identities = 43/237 (18%), Positives = 85/237 (35%), Gaps = 15/237 (6%)

Query: 70  GLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK 129
            L++    L   +S  +  L  ++ + + ++ +  +  S    L++L  L L  N    +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 130 IPPE---IGFLNKLQVLRIGDNLLW--GEIPPHIGNLTELRELAIAYCQLNGSIPVEIGN 184
                   G    LQ L +  N L    +    +  L  L  L I+    +  +P     
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 185 LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
            + +  L+L    +  +          L+    SNN L+ +       L  LQ L ++ N
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNLD-SFSLF---LPRLQELYISRN 461

Query: 245 SLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLL 301
            L  ++P + S    L  + +  N          ++L  L+++ L  N    S   +
Sbjct: 462 KLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 1e-18
 Identities = 54/238 (22%), Positives = 83/238 (34%), Gaps = 8/238 (3%)

Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
               D    SFT  I   L+  A +  L LS N++T      L +   +  L L S+  N
Sbjct: 7   SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGKIPPE-IGNLTALNVLNLQRNSLSG-NIPSTIQQC 737
                   +   L  L L  N+LS  +     G L++L  LNL  N      + S     
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 738 KKLYELRLSENFFTGSIPA-DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISY 796
             L  LR+        I   D   LT L   L++   +       SL S+  +  L +  
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 797 NQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCS 854
           ++    +      L+S+  L L + +L            +SS +      G  L   S
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  168 bits (427), Expect = 4e-45
 Identities = 113/550 (20%), Positives = 181/550 (32%), Gaps = 99/550 (18%)

Query: 154 IPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQ 213
           I P   + T L+E       L   +PVE  N+K  T      ++     P       E+ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 214 KFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGE 273
                +            L +    L L N  LS S+P    HL                
Sbjct: 62  VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHL---------------- 93

Query: 274 IPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSL 333
                      E L  S N+L+  +  L   LK+L     +  A +   P         L
Sbjct: 94  -----------ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP--------LL 133

Query: 334 QQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG 393
           + L ++ N+L  + P EL   S L+ +D+ +NS K +LP     LE +      NN    
Sbjct: 134 EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIA---AGNNQLE- 186

Query: 394 SFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGL 453
              PE+ NL  L  ++  +N +  K+P     L+++      +N +      EL N   L
Sbjct: 187 -ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE--ELPELQNLPFL 239

Query: 454 TEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSG 513
           T I    N    ++P+    L+ L +      DL    P        L       + LS 
Sbjct: 240 TTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLS- 293

Query: 514 SVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLT 573
                      LY +   +N  +  L      L++L   N S+NK    +  L     L 
Sbjct: 294 ------ELPPNLYYLNASSNEIRS-LCDLPPSLEEL---NVSNNKLI-ELPALPPR--LE 340

Query: 574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ 633
            L  + N  +  +P       NL +L + +N L    P     + +L             
Sbjct: 341 RLIASFNHLAE-VPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMNS--------H 387

Query: 634 IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL 693
           +A        L  L +  N L    P    S+++   L ++S               KL 
Sbjct: 388 LAEVPELPQNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLE 443

Query: 694 KLSLRGNNLS 703
                 ++  
Sbjct: 444 DDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  167 bits (425), Expect = 1e-44
 Identities = 103/509 (20%), Positives = 182/509 (35%), Gaps = 77/509 (15%)

Query: 328 LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEE------- 380
           ++N+ LQ+ +   + L+ E P+E     S  +   + + ++   P    +  E       
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 381 ------LTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYL 434
                   +L LNN   + S P    +L   E+L    N +T ++P     L++L     
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 435 YDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPAS 494
               +S   P        L  +    N     +PE +     L I+ +  N L   +P  
Sbjct: 122 NLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL 171

Query: 495 LGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINF 554
                 L+ IA  +N+L   +P   + L  L  I   NNS K  LP     L+ +     
Sbjct: 172 PP---SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESI---VA 222

Query: 555 SHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEF 614
            +N     +  L     LT +   NN     +P       +L  L +  N+LT ++P   
Sbjct: 223 GNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDLP---PSLEALNVRDNYLT-DLPELP 276

Query: 615 GKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLS 674
             LT L+  +  F+  +            L +L  S+NE+  ++     SL+E   L++S
Sbjct: 277 QSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEE---LNVS 325

Query: 675 SNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTI 734
           +N     +PA       L +L    N+L+ ++P    NL  L+V            P   
Sbjct: 326 NNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQLHVEYNPLREF----PDIP 376

Query: 735 QQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNI 794
           +  + L             +P     L +L     +  N    E P    S+   E L +
Sbjct: 377 ESVEDLRMNSHLA-----EVPELPQNLKQL----HVETNPLR-EFPDIPESV---EDLRM 423

Query: 795 SYNQLQGQVPASLGKLTSLHVLNLSNNHL 823
           +  ++      +      L      ++H 
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  165 bits (421), Expect = 3e-44
 Identities = 99/500 (19%), Positives = 171/500 (34%), Gaps = 80/500 (16%)

Query: 87  LNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIG 146
           ++ T L+     S++LT + P E   +++        + +    PP  G   ++ V R+ 
Sbjct: 8   VSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 147 DNLLWG------------EIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQ 194
           D L                +P    +L  L     +   L   +P    +LK L   +  
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 195 MNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVEL 254
           +  LS L P        L+    SNN LE  +P  +     L+I+++ NNSL   +P   
Sbjct: 123 LKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLP 172

Query: 255 SHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLS 314
               +L ++    N    E   EL  L  L  +    N+L      L     +LE++V  
Sbjct: 173 P---SLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKK----LPDLPLSLESIVAG 223

Query: 315 DNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRS 374
           +N       +    N   L  +    N L    P       SL+ L++ DN    +LP  
Sbjct: 224 NNILEE---LPELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-DLPEL 275

Query: 375 LDKLEELTDLLLNNNSFTGSFPPEIGNL--------------SKLENLFLFDNMITGKIP 420
              L  L       +  +   PP +  L                LE L + +N +  ++P
Sbjct: 276 PQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP 333

Query: 421 VEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVIL 480
               +L+ L       N ++  +P    N   L ++    N      P+    +++    
Sbjct: 334 ALPPRLERL---IASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVED---- 381

Query: 481 QLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLP 540
            LR N     +P      K+L    +  N L    P     + +L    + +     P  
Sbjct: 382 -LRMNSHLAEVPELPQNLKQLH---VETNPLR-EFPDIPESVEDLR---MNSERVVDPYE 433

Query: 541 PSLFQLKKLRIINFSHNKFS 560
            +     KL    F H+   
Sbjct: 434 FAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  155 bits (394), Expect = 1e-40
 Identities = 96/463 (20%), Positives = 155/463 (33%), Gaps = 79/463 (17%)

Query: 378 LEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDN 437
              L + L ++++ T   P E  N+      +   +      P   G+ + ++   L D 
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 438 QMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGY 497
                            E++      S S+PE    L++LV      N L+  +P     
Sbjct: 69  -----------LDRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQS 112

Query: 498 CKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN 557
            K L         LS   PL    L  L +    NN  +    P L     L+II+  +N
Sbjct: 113 LKSLLVDNNNLKALSDLPPL----LEYLGV---SNNQLEKL--PELQNSSFLKIIDVDNN 163

Query: 558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKL 617
                        SL  +   NN        EL     L+ +   +N L   +P     L
Sbjct: 164 SLKKLPDLPP---SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLSL 217

Query: 618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN 677
             +       N       P+L     L  +   NN L  T+P    SL+    L++  N 
Sbjct: 218 ESI---VAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA---LNVRDNY 268

Query: 678 FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQC 737
               +P    + + L       + L         NL  LN  + +  SL    PS     
Sbjct: 269 LT-DLPELPQSLTFLDVSENIFSGL----SELPPNLYYLNASSNEIRSLCDLPPS----- 318

Query: 738 KKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797
             L EL +S N     +PA   RL  L      S N+ + E+P    +L   ++L++ YN
Sbjct: 319 --LEELNVSNNKLI-ELPALPPRLERL----IASFNHLA-EVPELPQNL---KQLHVEYN 367

Query: 798 QLQGQVPASLGKLTSLHV----------------LNLSNNHLQ 824
            L+ + P     +  L +                L++  N L+
Sbjct: 368 PLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  149 bits (379), Expect = 9e-39
 Identities = 90/422 (21%), Positives = 142/422 (33%), Gaps = 70/422 (16%)

Query: 419 IPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLV 478
           I         L     + + ++  +P E  N    TE     + +  + P   G+ + + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 479 ILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGP 538
           + +LR               ++  ++ L +  LS S+P     L  L       NS    
Sbjct: 62  VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHLESLVA---SCNSLT-E 105

Query: 539 LPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSR 598
           LP     LK L + N +    S           L  L ++NN     +P EL  S  L  
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157

Query: 599 LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI 658
           + + +N L   +P     L  +       N       P+L     L  +   NN L   +
Sbjct: 158 IDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KL 210

Query: 659 PFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNV 718
           P    SL+    +   +N        E+ N   L  +    N L   +P    +L ALNV
Sbjct: 211 PDLPLSLES---IVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNV 264

Query: 719 LNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQV------------ 766
            +     L     S       L  L +SEN F+  +      L  L              
Sbjct: 265 RDNYLTDLPELPQS-------LTFLDVSENIFS-GLSELPPNLYYLNASSNEIRSLCDLP 316

Query: 767 ----ILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNH 822
                L++S N    E+P       +LERL  S+N L  +VP     L  L   ++  N 
Sbjct: 317 PSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLKQL---HVEYNP 368

Query: 823 LQ 824
           L+
Sbjct: 369 LR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  140 bits (355), Expect = 1e-35
 Identities = 84/418 (20%), Positives = 145/418 (34%), Gaps = 60/418 (14%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L  S + L+  +     +L SL   + +  +L+ L P        L  L + +N      
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKL- 146

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
            PE+   + L+++ + +N L  ++P    +L  +        QL   +P E+ NL  LT+
Sbjct: 147 -PELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIA---AGNNQLE-ELP-ELQNLPFLTA 199

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           +    N L  L          L+   A NN+L       +  L  L  +   NN L  ++
Sbjct: 200 IYADNNSLKKLPDL----PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TL 252

Query: 251 PVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLET 310
           P     L  L   +           S       L  LD+S+N  SG    L+    NL  
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPELPQS-------LTFLDVSENIFSG----LSELPPNLYY 301

Query: 311 LVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE 370
           L  S N          C    SL++L ++ NKL  E P        L++L  S N    E
Sbjct: 302 LNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-E 351

Query: 371 LPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLS 430
           +P     L++L    +  N     FP    ++  L      ++ +  ++P     L+ L 
Sbjct: 352 VPELPQNLKQLH---VEYNPLR-EFPDIPESVEDLR----MNSHLA-EVPELPQNLKQL- 401

Query: 431 AIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
             ++  N +    P    +   + ++                    L       +   
Sbjct: 402 --HVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (307), Expect = 2e-29
 Identities = 62/328 (18%), Positives = 108/328 (32%), Gaps = 43/328 (13%)

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS 560
           LQ+     + L+  +P+    +          + ++   PP   + +++ +         
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-- 69

Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620
                         L+L N   S  +P       +L  L  + N LT  +P     L  L
Sbjct: 70  --------DRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLKSL 116

Query: 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
              + +  + +            L +L +SNN+L   +P  L +   +  +D+ +N+   
Sbjct: 117 LVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK- 166

Query: 681 TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKL 740
            +P    +   L  ++   N L     PE+ NL  L  +    NSL             L
Sbjct: 167 KLPDLPPS---LEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK----KLPDLPLSL 217

Query: 741 YELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ 800
             +    N        +L  L  L   +    N     +P    SL   E LN+  N L 
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTT-IYADNNLLK-TLPDLPPSL---EALNVRDNYLT 270

Query: 801 GQVPASLGKLTSLHVLNLSNNHLQGQLP 828
             +P     LT L V     + L    P
Sbjct: 271 -DLPELPQSLTFLDVSENIFSGLSELPP 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  160 bits (406), Expect = 2e-43
 Identities = 66/371 (17%), Positives = 115/371 (30%), Gaps = 52/371 (14%)

Query: 80  GSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNK 139
           GS      + +  E L    ++        L Q Q            + +        N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNN 57

Query: 140 LQVLRIGDNLLWGEIPPHIGNLTE--LRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNK 197
            Q+       L       + + T+     L +    L    P +   L HL  + +    
Sbjct: 58  PQIETRTGRAL-KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 198 LSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHL 257
           L                           +P ++     L+ L LA N L  ++P  ++ L
Sbjct: 116 LM-------------------------ELPDTMQQFAGLETLTLARNPLR-ALPASIASL 149

Query: 258 FNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNA 317
             LR L++       E+P  L       E                  L NL++L L    
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQ---------------GLVNLQSLRLEWTG 194

Query: 318 FTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDK 377
              S+P     N  +L+ L +  + LS      +     L++LDL   +     P     
Sbjct: 195 IR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 378 LEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDN 437
              L  L+L + S   + P +I  L++LE L L   +   ++P  I +L     I +  +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 438 QMSGSIPRELT 448
             +        
Sbjct: 312 LQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  160 bits (406), Expect = 2e-43
 Identities = 61/317 (19%), Positives = 113/317 (35%), Gaps = 20/317 (6%)

Query: 522 LSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNS 581
            S    +    ++   P    L Q ++    +        S +    SN+      T  +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNAD---RNRWHSAWRQANSNNPQIETRTGRA 67

Query: 582 FSG-PIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK 640
                   E A       L L    L    P +  +L+ L  + +       ++   + +
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 641 CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCS---------K 691
            A L  L L+ N L   +P  + SL  + EL + +      +P  + +            
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751
           L  L L    +   +P  I NL  L  L ++ + LS  +   I    KL EL L      
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL 242

Query: 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811
            + P   G    L+  L L   +    +P  +  L +LE+L++       ++P+ + +L 
Sbjct: 243 RNYPPIFGGRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 812 SLHVLNLSNNHLQGQLP 828
           +  ++ +  + LQ QL 
Sbjct: 302 ANCIILVPPH-LQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  148 bits (376), Expect = 1e-39
 Identities = 59/339 (17%), Positives = 109/339 (32%), Gaps = 34/339 (10%)

Query: 155 PPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQK 214
             H  + +    L              +   +   + D      +     +       Q 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQI 60

Query: 215 FAASNNMLEGTIPSSIVLLKS--LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDG 272
              +   L+      +          L L +  L    P +   L +L+++ +       
Sbjct: 61  ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117

Query: 273 EIPSELNKLAQLEELDLSKNNLS---GSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLN 329
           E+P  + + A LE L L++N L     SI+     L  L  L +        +P      
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRALPASIA----SLNRLRELSIRACPELTELPEPLA-- 171

Query: 330 NSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN 389
                         S +   E     +LQ L L     +  LP S+  L+ L  L + N+
Sbjct: 172 --------------STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

Query: 390 SFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN 449
             + +  P I +L KLE L L         P   G    L  + L D     ++P ++  
Sbjct: 217 PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
            + L ++D  G      +P  + +L    I+ +  +  +
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  147 bits (372), Expect = 7e-39
 Identities = 55/351 (15%), Positives = 101/351 (28%), Gaps = 58/351 (16%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L    S                   D +                N +I      +     
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK-AT 71

Query: 131 PPEIGFLN--KLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHL 188
              +          L +    L  + P     L+ L+ + I    L   +P  +     L
Sbjct: 72  ADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGL 129

Query: 189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248
            +L L  N L                           +P+SI  L  L+ L++       
Sbjct: 130 ETLTLARNPLR-------------------------ALPASIASLNRLRELSIRACPELT 164

Query: 249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG---SISLLNTQL 305
            +P  L+                 +   E   L  L+ L L    +     SI+     L
Sbjct: 165 ELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIRSLPASIA----NL 205

Query: 306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365
           +NL++L + ++  + ++      +   L++L L        +P      + L++L L D 
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMIT 416
           S    LP  + +L +L  L L         P  I  L     + +  ++  
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  135 bits (343), Expect = 3e-35
 Identities = 53/354 (14%), Positives = 106/354 (29%), Gaps = 46/354 (12%)

Query: 441 GSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKR 500
           GS      + SG   + F G+       + + + +        +   +     S      
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NN 57

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLY--NNSFKGPLPPSLFQLKKLRIINFSHNK 558
            Q        L  +        ++   + L   +       P   F+L  L+ +      
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115

Query: 559 FSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLT 618
                                      +P  +     L  L LA N L   +P+    L 
Sbjct: 116 LME------------------------LPDTMQQFAGLETLTLARNPLR-ALPASIASLN 150

Query: 619 ELNFLDLSFNS---------FTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG 669
            L  L +              +   + +      L  L L    +  ++P  + +LQ + 
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
            L + ++  +  +   I +  KL +L LRG       PP  G    L  L L+  S    
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL 783
           +P  I +  +L +L L        +P+ + +L    + + +   +   ++    
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI-ILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 26/179 (14%)

Query: 79  SGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLN 138
           S   S +   L +L++L L    +  L P+ +  LQNL+ L + ++  S  + P I  L 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 139 KLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKL 198
           KL+ L +         PP  G    L+ L +  C    ++P++I  L  L  LDL     
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL----- 284

Query: 199 SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHL 257
                                 +    +PS I  L +  I+ +  +  +          
Sbjct: 285 -------------------RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 5e-18
 Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 11/175 (6%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
            L    +         +    +         + + +      N     +      +L   
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK-A 70

Query: 730 IPSTIQQCK--KLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL 787
               ++         L L         P    RL+ LQ  + +       E+P ++    
Sbjct: 71  TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH-MTIDAAGLM-ELPDTMQQFA 127

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGN 842
            LE L ++ N L+  +PAS+  L  L  L++       +LP   +    S     
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  157 bits (399), Expect = 3e-41
 Identities = 73/483 (15%), Positives = 140/483 (28%), Gaps = 45/483 (9%)

Query: 81  SISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKL 140
           +I     N    +   ++ +SL   + S      N++ L L  N  S     ++    KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 141 QVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSG 200
           ++L +  N+L       + +L+ LR L +    +      E+     + +L    N +S 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 201 LIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNL 260
           +                                +  + + LANN ++    ++      +
Sbjct: 114 VSCSR---------------------------GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 261 RYLNLLGN-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT 319
           +YL+L  N I              LE L+L  N +   +         L+TL LS N   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA 204

Query: 320 GSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLE 379
             +  +F  + + +  + L  NKL       L    +L+  DL  N F     R     +
Sbjct: 205 -FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSK 260

Query: 380 ELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQM 439
                 +   +            +                     +L  L          
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 440 SGSIPRELT----NCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASL 495
            GS    L     N +   EID     +   I +   + +  + L+ ++  L   +    
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 496 GYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFS 555
                L                T        L  +     +  +     Q   +R  +  
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMY 440

Query: 556 HNK 558
            +K
Sbjct: 441 QHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  154 bits (391), Expect = 4e-40
 Identities = 63/468 (13%), Positives = 137/468 (29%), Gaps = 19/468 (4%)

Query: 158 IGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAA 217
             N    +   +    L  ++     +  ++  LDL  N LS +    +    +L+    
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 218 SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSE 277
           S+N+L       +  L +L+ L+L NN +      EL    ++  L+   N     +   
Sbjct: 66  SSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCS 117

Query: 278 LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI 337
                  + + L+ N ++    L       ++ L L  N        +   ++ +L+ L 
Sbjct: 118 R--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 338 LARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPP 397
           L  N +  +   +++  + L+ LDLS N     +         +T + L NN        
Sbjct: 176 LQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEID 457
            +     LE+  L  N       +     +      +    +     +    C+  T   
Sbjct: 232 ALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 458 FFGNHFSGSIPETMGKLKNLVILQLRQNDLSG----PIPASLGYCKRLQQIALADNKLSG 513
           +              +L  L   +       G     +        R ++I     +   
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 514 SVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLT 573
            +            +     +    +        +L              +     + L 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELN 621
            L      +      + ++  N  R    + H    +  E  +L +LN
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  152 bits (385), Expect = 3e-39
 Identities = 69/431 (16%), Positives = 134/431 (31%), Gaps = 23/431 (5%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
             ++ S L  +++    +  +++ LDLS N L+ +  ++L     L +L L SN      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
             ++  L+ L+ L + +N +       +     +  L  A   ++    V     +   +
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR---VSCSRGQGKKN 124

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEG-TIPSSIVLLKSLQILNLANNSLSGS 249
           + L  NK++ L          +Q      N ++            +L+ LNL  N +   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 250 IPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLE 309
           +  ++     L+ L+L  N     +  E    A +  + L  N L   I       +NLE
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 310 TLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKG 369
              L  N F       F   N  +Q   +A+  +          C+            + 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 370 ELPRSLDKLEELT----DLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK 425
                 D+L  L      LL    S T     E  N ++   +          I     +
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLR 358

Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG--SIPETMGKLKNLVILQLR 483
            Q    +      +   +       + L                 E    L+ L  +  R
Sbjct: 359 KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKR 418

Query: 484 QNDLSGPIPAS 494
             ++     + 
Sbjct: 419 YEEMYVEQQSV 429

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  149 bits (378), Expect = 2e-38
 Identities = 62/395 (15%), Positives = 123/395 (31%), Gaps = 42/395 (10%)

Query: 466 SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525
           +I E         I ++  + L   + +       ++++ L+ N LS          ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGP 585
            L+ L +N         L  L  LR ++ ++N     +       S+  L   NN+ S  
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANNNISR- 113

Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQL-SKCAKL 644
           +       +    + LA+N +T     + G  + + +LDL  N        +L +    L
Sbjct: 114 VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG 704
            HL L  N +   +   +    ++  LDLSSN     +  E  + + +  +SLR N L  
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 705 KIPPEIGNLTALNVLNLQRNSLSGNIP-----------------------STIQQCKKLY 741
            I   +     L   +L+ N                                 ++C    
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 742 ELRLSENFFTGSIPADLGRLTELQV----ILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797
                             RL  L+     +L    +     +     +  +   ++    
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKE 346

Query: 798 QLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFS 832
           Q +  +     +  +   L      L  Q+     
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  141 bits (357), Expect = 8e-36
 Identities = 57/433 (13%), Positives = 134/433 (30%), Gaps = 25/433 (5%)

Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDF 458
             N ++ +   + D+ +   +         +  + L  N +S     +L   + L  ++ 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 459 FGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLT 518
             N    ++   +  L  L  L L  N +       L     ++ +  A+N +S      
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSR 118

Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSN--SLTALD 576
            +    +YL    NN              +++ ++   N+     +    ++  +L  L+
Sbjct: 119 GQGKKNIYL---ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
           L  N     +  ++  +  L  L L+ N L   +  EF     + ++ L  N     I  
Sbjct: 176 LQYNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 637 QLSKCAKLAHLLLSNNEL-TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
            L     L H  L  N    GT+  +    Q +    ++              C+     
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQ----QCKKLYELRLSENFFT 751
                       P    L AL        S  G+    ++       +  E+   +  + 
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811
            ++   +    + ++ L+  K     ++     +  +L+           ++  +  + +
Sbjct: 350 -TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQS 407

Query: 812 SLHVLNLSNNHLQ 824
            L +L       +
Sbjct: 408 PLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (341), Expect = 1e-33
 Identities = 72/489 (14%), Positives = 155/489 (31%), Gaps = 21/489 (4%)

Query: 297 SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
           +I  +       +   ++D++           +  ++++L L+ N LS     +L   + 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMIT 416
           L+ L+LS N         L+ L  L  L LNNN        E+     +E L   +N I+
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 417 GKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG-SIPETMGKLK 475
               V   + Q    IYL +N+++     +    S +  +D   N     +  E      
Sbjct: 113 R---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
            L  L L+ N +   +   +    +L+ + L+ NKL+  +   F+  + +  I+L NN  
Sbjct: 170 TLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 536 KGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN 595
              +  +L   + L   +   N F         S +     +   +              
Sbjct: 227 VL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 596 LSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG----QIAPQLSKCAKLAHLLLSN 651
            +                  +L  L   + +  S  G    ++  +    A+   +    
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIG 711
            +    I       Q    L+      +  V       ++L     +             
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 712 NLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLS 771
                 +  + +      +     Q   + +  + ++  T  +  +  RL +L    DL+
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLNGEADLA 464

Query: 772 KNNFSGEIP 780
             + +  + 
Sbjct: 465 LASANATLQ 473

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (340), Expect = 2e-33
 Identities = 62/497 (12%), Positives = 136/497 (27%), Gaps = 60/497 (12%)

Query: 328 LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLN 387
            N +  +   +  + L            ++++LDLS N         L    +L  L L+
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 388 NNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPREL 447
           +N        ++ +LS L  L L +N +      E+    ++  ++  +N +S  +    
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS- 117

Query: 448 TNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSG-PIPASLGYCKRLQQIAL 506
               G   I    N  +       G    +  L L+ N++              L+ + L
Sbjct: 118 -RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 507 ADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPL 566
             N +                           +   +    KL+ ++ S NK +      
Sbjct: 177 QYNFIYD-------------------------VKGQVV-FAKLKTLDLSSNKLAFMGPEF 210

Query: 567 TGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLS 626
             +  +T + L NN     I   L  S+NL    L  N        +F          ++
Sbjct: 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVA 268

Query: 627 FNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI 686
             +          +C                   +   L  +   + +  +         
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ------- 321

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
                         + + ++  E  N      ++  +      I     + +    L   
Sbjct: 322 -------------GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

Query: 747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPAS 806
           +      +        EL   L  +      +      S L+L R  +   +    V   
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM-YVEQQ 427

Query: 807 LGKLTSLHVLNLSNNHL 823
             +  ++   ++  +  
Sbjct: 428 SVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (340), Expect = 2e-33
 Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 17/300 (5%)

Query: 570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629
           N      +T++S    + S    + N+  L L+ N L+    ++    T+L  L+LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 630 FTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNC 689
                   L   + L  L L+NN +       L     I  L  ++NN +  V    G  
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSRG-- 119

Query: 690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG-NIPSTIQQCKKLYELRLSEN 748
                + L  N ++     + G  + +  L+L+ N +   N          L  L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 749 FFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLG 808
           F    +   +    +L+  LDLS N  +  + P   S   +  +++  N+L   +  +L 
Sbjct: 180 FIY-DVKGQVV-FAKLKT-LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 809 KLTSLHVLNLSNNHLQ-GQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNT 867
              +L   +L  N    G L   FS       +    +      +  E +   +      
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  150 bits (382), Expect = 1e-39
 Identities = 78/346 (22%), Positives = 142/346 (41%), Gaps = 25/346 (7%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           +++           + + L + + +   ++++  L  + L   + + +L L       +I
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EI 84

Query: 131 PPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKH 187
                 + + +Q L +G N +   +PPH+  N+  L  L +    L+ S+P  I  N   
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 142

Query: 188 LTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
           LT+L +  N L  +  +       LQ    S+N L   +  S  L+ SL   N++ N LS
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS 199

Query: 248 GSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKN 307
                 L+    +  L+   N  +  +   +    +L  L L  NNL+ +  LLN     
Sbjct: 200 -----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDTAWLLN--YPG 249

Query: 308 LETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSF 367
           L  + LS N     I     +    L++L ++ N+L     L      +L+ LDLS N  
Sbjct: 250 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307

Query: 368 KGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN 413
              + R+  + + L +L L++NS   +          L+NL L  N
Sbjct: 308 L-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  145 bits (369), Expect = 5e-38
 Identities = 81/363 (22%), Positives = 146/363 (40%), Gaps = 25/363 (6%)

Query: 81  SISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNK 139
            I  +         + +   +       E   L N +I+   +++   K+P  +     +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 140 LQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNK 197
           +++L + D  +  EI  +       +++L + +  +   +P  +  N+  LT L L+ N 
Sbjct: 71  VELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128

Query: 198 LSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHL 257
           LS L     H   +L   + SNN LE     +     SLQ L L++N L+    V+LS +
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLI 185

Query: 258 FNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNA 317
            +L + N+  N+      S L     +EELD S N+++    +       L  L L  N 
Sbjct: 186 PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNN 237

Query: 318 FTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDK 377
            T      + LN   L ++ L+ N+L        ++   L++L +S+N     L      
Sbjct: 238 LT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293

Query: 378 LEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDN 437
           +  L  L L++N              +LENL+L  N I     +++    TL  + L  N
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHN 349

Query: 438 QMS 440
              
Sbjct: 350 DWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (346), Expect = 6e-35
 Identities = 66/392 (16%), Positives = 148/392 (37%), Gaps = 22/392 (5%)

Query: 225 TIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQL 284
            I S++        +++   +       E   L N + +    +       + L+   Q+
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 285 EELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS 344
           E L+L+   +    +        ++ L +  NA    +P     N   L  L+L RN LS
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 345 GEFPLELLR-CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLS 403
              P  +      L  L +S+N+ +     +      L +L L++N  T         + 
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIP 186

Query: 404 KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHF 463
            L +  +  N+++      +     +  +    N ++  +   +     LT +    N+ 
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 464 SGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLS 523
           +      +     LV + L  N+L   +       +RL+++ +++N+L  ++ L  + + 
Sbjct: 239 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 524 ELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFS 583
            L ++ L +N     +  +  Q  +L  +   HN    ++  L+  ++L  L L++N + 
Sbjct: 296 TLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TL-KLSTHHTLKNLTLSHNDWD 352

Query: 584 GPIPSELAMSRNLSRLRLAHNHLTGNIPSEFG 615
               S  A+ RN++R  +        I  +  
Sbjct: 353 C--NSLRALFRNVARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (335), Expect = 1e-33
 Identities = 71/362 (19%), Positives = 126/362 (34%), Gaps = 24/362 (6%)

Query: 466 SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525
            I   +        + +                   + +   ++ +            ++
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 526 YLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSG-SIYPLTGSNSLTALDLTNNSFS 583
            L+ L +   +  +    F     ++ +    N       +       LT L L  N  S
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 584 GPIPSELAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNSFTGQIAPQLSKCA 642
                    +  L+ L +++N+L   I  + F   T L  L LS N  T      LS   
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT---HVDLSLIP 186

Query: 643 KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
            L H  +S N L+      L     + ELD S N+ N  V   +    +L  L L+ NNL
Sbjct: 187 SLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL 238

Query: 703 SGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT 762
           +      + N   L  ++L  N L   +     + ++L  L +S N    ++      + 
Sbjct: 239 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 763 ELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNH 822
            L+V LDLS N+    +  +     +LE L + +N +   +  S     +L  L LS+N 
Sbjct: 296 TLKV-LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHND 350

Query: 823 LQ 824
             
Sbjct: 351 WD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (323), Expect = 6e-32
 Identities = 66/384 (17%), Positives = 130/384 (33%), Gaps = 46/384 (11%)

Query: 419 IPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLV 478
           I   +        +++           E    +    + F  +         +   + + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 479 ILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGP 538
           +L L    +      +  Y   +Q++ +  N +    P  F+ +  L ++ L  N     
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS- 131

Query: 539 LPPSLFQ-LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLS 597
           LP  +F    KL  ++ S+N                   + +++F          + +L 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLE---------------RIEDDTFQA--------TTSLQ 168

Query: 598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT 657
            L+L+ N LT ++      +  L   ++S+N  +      L+    +  L  S+N +   
Sbjct: 169 NLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-V 219

Query: 658 IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTAL 716
           +        E+  L L  NN   T  A + N   L+++ L  N L  KI       +  L
Sbjct: 220 VRG--PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 274

Query: 717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS 776
             L +  N L   +    Q    L  L LS N     +  +  +   L+  L L  N+  
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN-LYLDHNSIV 331

Query: 777 GEIPPSLGSLLKLERLNISYNQLQ 800
             +     +   L+ L +S+N   
Sbjct: 332 -TLKL--STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (321), Expect = 1e-31
 Identities = 72/380 (18%), Positives = 127/380 (33%), Gaps = 45/380 (11%)

Query: 371 LPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEI-GKLQTL 429
           +  +L       D+ ++  +    F  E   L+  + +   ++ +  K+P  +    + +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 430 SAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSG 489
             + L D Q              + EID                   +  L +  N +  
Sbjct: 72  ELLNLNDLQ--------------IEEID----------TYAFAYAHTIQKLYMGFNAIRY 107

Query: 490 PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKK 548
             P        L  + L  N LS      F    +L  +++ NN+ +  +    FQ    
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTS 166

Query: 549 LRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTG 608
           L+ +  S N+ +     L+   SL   +++ N       S LA+   +  L  +HN +  
Sbjct: 167 LQNLQLSSNRLTH--VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN- 218

Query: 609 NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEI 668
            +        EL  L L  N+ T      L     L  + LS NEL   +      +Q +
Sbjct: 219 VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG 728
             L +S+N     +         L  L L  N+L   +         L  L L  NS+  
Sbjct: 275 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 331

Query: 729 NIPSTIQQCKKLYELRLSEN 748
            +   +     L  L LS N
Sbjct: 332 TLK--LSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 10/182 (5%)

Query: 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTA 715
            I   L       ++ +     +     E    +    ++ + + +  K+P  +  +   
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 70

Query: 716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGR-LTELQVILDLSKNN 774
           + +LNL    +             + +L +  N     +P  + + +  L V L L +N+
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV-LVLERND 128

Query: 775 FSGEIPPSL-GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSG 833
            S  +P  +  +  KL  L++S N L+     +    TSL  L LS+N L     +  S 
Sbjct: 129 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSL 184

Query: 834 FP 835
            P
Sbjct: 185 IP 186

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  144 bits (365), Expect = 4e-38
 Identities = 60/330 (18%), Positives = 111/330 (33%), Gaps = 41/330 (12%)

Query: 81  SISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKL 140
           +I     N    +   ++ +SL   + S      N++ L L  N  S     ++    KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 141 QVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSG 200
           ++L +  N+L       + +L+ LR L +    +      E+     + +L    N +S 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 201 LIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNL 260
                                    +  S    +  + + LANN ++    ++      +
Sbjct: 113 ------------------------RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 261 RYLNLLGN-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT 319
           +YL+L  N I              LE L+L  N +   +         L+TL LS N   
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA 204

Query: 320 GSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFK-GELPRSLDKL 378
             +  +F  + + +  + L  NKL       L    +L+  DL  N F  G L     K 
Sbjct: 205 -FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 379 EELTDLLLNNNSFTGSFPPEIGNLSKLENL 408
           + +  +             E   +  L + 
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  140 bits (355), Expect = 9e-37
 Identities = 55/315 (17%), Positives = 106/315 (33%), Gaps = 17/315 (5%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
             ++ S L  +++    +  +++ LDLS N L+ +  ++L     L +L L SN      
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
             ++  L+ L+ L + +N +       +     +  L  A   ++  +       +   +
Sbjct: 73  TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--GQGKKN 124

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEG-TIPSSIVLLKSLQILNLANNSLSGS 249
           + L  NK++ L          +Q      N ++            +L+ LNL  N +   
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 250 IPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLE 309
           +         L+ L+L  N     +  E    A +  + L  N L   I       +NLE
Sbjct: 184 VK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 310 TLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKG 369
              L  N F       F   N  +Q   +A+  +          C+            + 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 370 ELPRSLDKLEELTDL 384
                 D+L  L   
Sbjct: 299 LPAPFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (351), Expect = 3e-36
 Identities = 62/290 (21%), Positives = 106/290 (36%), Gaps = 20/290 (6%)

Query: 570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629
           N      +T++S    + S    + N+  L L+ N L+    ++    T+L  L+LS N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 630 FTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNC 689
                   L   + L  L L+NN +       L     I  L  ++NN +  V    G  
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSRG-- 119

Query: 690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG-NIPSTIQQCKKLYELRLSEN 748
                + L  N ++     + G  + +  L+L+ N +   N          L  L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 749 FFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLG 808
           F    +   +    +L+  LDLS N  +  + P   S   +  +++  N+L   +  +L 
Sbjct: 180 FIY-DVKGQVV-FAKLKT-LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 809 KLTSLHVLNLSNNHLQ-GQLPLTFSGFPLSSFL---GNAKLCGPPLLSCS 854
              +L   +L  N    G L   FS       +      KL G     C+
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (336), Expect = 2e-34
 Identities = 57/331 (17%), Positives = 110/331 (33%), Gaps = 16/331 (4%)

Query: 466 SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525
           +I E         I ++  + L   + +       ++++ L+ N LS          ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGP 585
            L+ L +N         L  L  LR ++ ++N     +       S+  L   NN+ S  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANNNISR- 113

Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG-QIAPQLSKCAKL 644
           +       +    + LA+N +T     + G  + + +LDL  N       A   +    L
Sbjct: 114 VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG 704
            HL L  N +   +   +    ++  LDLSSN     +  E  + + +  +SLR N L  
Sbjct: 172 EHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 705 KIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTEL 764
            I   +     L   +L+ N             K      +++      +         +
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTV 285

Query: 765 QVILDLSKNNFSGEIPPSLGSLLKLERLNIS 795
             +             P    L+ L   +  
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (283), Expect = 2e-27
 Identities = 50/337 (14%), Positives = 106/337 (31%), Gaps = 24/337 (7%)

Query: 394 SFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGL 453
           +      N ++ +   + D+ +   +         +  + L  N +S     +L   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 454 TEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSG 513
             ++   N       + +  L  L  L L  N +       L     ++ +  A+N +S 
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 514 SVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP--LTGSNS 571
                 +    +Y   L NN              +++ ++   N+     +      S++
Sbjct: 114 VSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 572 LTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT 631
           L  L+L  N     +  ++  +  L  L L+ N L   +  EF     + ++ L  N   
Sbjct: 171 LEHLNLQYNFIYD-VKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 632 GQIAPQLSKCAKLAHLLLSNNELT-GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCS 690
             I   L     L H  L  N    GT+  +    Q +  +   +      +  +     
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEEC 283

Query: 691 KLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS 727
            +  L   G      +P       A  ++ L  +   
Sbjct: 284 TVPTLGHYGAYCCEDLP----APFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (266), Expect = 4e-25
 Identities = 48/227 (21%), Positives = 80/227 (35%), Gaps = 15/227 (6%)

Query: 610 IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG 669
           I              ++ +S    +A        +  L LS N L+      L    ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
            L+LSSN        ++ + S L  L L  N +      E+    ++  L+   N++S  
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG-EIPPSLGSLLK 788
           +  +    +    + L+ N  T     D G  + +Q  LDL  N            S   
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQY-LDLKLNEIDTVNFAELAASSDT 170

Query: 789 LERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
           LE LN+ YN +   V   +     L  L+LS+N L   +   F    
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAA 214

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 753 SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTS 812
           +I          + I  ++ ++    +     S   ++ L++S N L     A L   T 
Sbjct: 1   AIHEIKQNGNRYK-IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 813 LHVLNLSNNHLQ 824
           L +LNLS+N L 
Sbjct: 60  LELLNLSSNVLY 71

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  146 bits (370), Expect = 9e-37
 Identities = 78/347 (22%), Positives = 142/347 (40%), Gaps = 25/347 (7%)

Query: 70  GLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK 129
            +++           + + L + + +   ++++  L  + L   + + +L L       +
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-E 89

Query: 130 IPPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLK 186
           I      + + +Q L +G N +   +PPH+  N+  L  L +    L+ S+P  I  N  
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTP 147

Query: 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL 246
            LT+L +  N L  +  +       LQ    S+N L   +  S  L+ SL   N++ N L
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLL 204

Query: 247 SGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLK 306
           S      L+    +  L+   N  +  +   +    +L  L L  NNL+ +  LLN    
Sbjct: 205 S-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDTAWLLN--YP 254

Query: 307 NLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNS 366
            L  + LS N     I     +    L++L ++ N+L     L      +L+ LDLS N 
Sbjct: 255 GLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 312

Query: 367 FKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN 413
               + R+  + + L +L L++NS   +          L+NL L  N
Sbjct: 313 LL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  139 bits (352), Expect = 1e-34
 Identities = 81/363 (22%), Positives = 146/363 (40%), Gaps = 25/363 (6%)

Query: 81  SISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNK 139
            I  +         + +   +       E   L N +I+   +++   K+P  +     +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQ 76

Query: 140 LQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNK 197
           +++L + D  +  EI  +       +++L + +  +   +P  +  N+  LT L L+ N 
Sbjct: 77  VELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134

Query: 198 LSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHL 257
           LS L     H   +L   + SNN LE     +     SLQ L L++N L+    V+LS +
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLI 191

Query: 258 FNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNA 317
            +L + N+  N+      S L     +EELD S N+++    +       L  L L  N 
Sbjct: 192 PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNN 243

Query: 318 FTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDK 377
            T      + LN   L ++ L+ N+L        ++   L++L +S+N     L      
Sbjct: 244 LT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 299

Query: 378 LEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDN 437
           +  L  L L++N              +LENL+L  N I     +++    TL  + L  N
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHN 355

Query: 438 QMS 440
              
Sbjct: 356 DWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  128 bits (324), Expect = 5e-31
 Identities = 85/592 (14%), Positives = 183/592 (30%), Gaps = 49/592 (8%)

Query: 153 EIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEEL 212
            I  ++       ++ I     +     E   L +   +  + + +  L    +    ++
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 213 QKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLGNIFD 271
           +    ++  +E     +     ++Q L +  N++   +P     ++  L  L L  N   
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 272 GEIPSEL-NKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNN 330
             +P  + +   +L  L +S NNL            +L+ L LS N  T  + +      
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LI 191

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
            SL    ++ N LS      L    ++++LD S NS    +   +    ELT L L +N+
Sbjct: 192 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNN 243

Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450
            T      + N   L  + L  N +   +     K+Q L  +Y+ +N++  ++       
Sbjct: 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK 510
             L  +D   NH    +     +   L  L L  N +   +   L     L+ + L+ N 
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 356

Query: 511 LSGSVPLT-FRFLSELYLITLYNNSFKGPL---------PPSLFQLKKLRIINFS--HNK 558
              +     FR ++   +     +                   +  + L+ I  +    K
Sbjct: 357 WDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK 416

Query: 559 FSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLT 618
              +    + ++++ ++   ++  +          +   +L    N L   +     +  
Sbjct: 417 VQRAQGRCSATDTINSVQSLSHYIT---QQGGVPLQGNEQLEAEVNELRAEVQQLTNEQI 473

Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
           +   L                    L    L  + L  +          + E        
Sbjct: 474 QQEQLLQG---------LHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRE 524

Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGN--LTALNVLNLQRNSLSG 728
                 E     K  +   + N    K                +L+R  +  
Sbjct: 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (309), Expect = 3e-29
 Identities = 66/384 (17%), Positives = 130/384 (33%), Gaps = 46/384 (11%)

Query: 419 IPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLV 478
           I   +        +++           E    +    + F  +         +   + + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 479 ILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGP 538
           +L L    +      +  Y   +Q++ +  N +    P  F+ +  L ++ L  N     
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS- 137

Query: 539 LPPSLFQ-LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLS 597
           LP  +F    KL  ++ S+N                   + +++F          + +L 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLE---------------RIEDDTFQA--------TTSLQ 174

Query: 598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT 657
            L+L+ N LT ++      +  L   ++S+N  +      L+    +  L  S+N +   
Sbjct: 175 NLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-V 225

Query: 658 IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTAL 716
           +        E+  L L  NN   T  A + N   L+++ L  N L  KI       +  L
Sbjct: 226 VRG--PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 280

Query: 717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS 776
             L +  N L   +    Q    L  L LS N     +  +  +   L+  L L  N+  
Sbjct: 281 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN-LYLDHNSIV 337

Query: 777 GEIPPSLGSLLKLERLNISYNQLQ 800
             +     +   L+ L +S+N   
Sbjct: 338 -TLKL--STHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 9/168 (5%)

Query: 675 SNNFNGTVPAEIGNCSKLLK-LSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNI--- 730
             N     P      S L         ++  +          + + N +  +   +    
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 731 --PSTIQQCKKLYELRLSENFFTGSIPAD-LGRLTELQVILDLSKNNFSGEIPPSLGSLL 787
              + +   +++  L L++      I          +Q  L +  N      P    ++ 
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQK-LYMGFNAIRYLPPHVFQNVP 123

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
            L  L +  N L             L  L++SNN+L+     TF    
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  140 bits (354), Expect = 2e-35
 Identities = 69/335 (20%), Positives = 121/335 (36%), Gaps = 13/335 (3%)

Query: 60  TCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRIL 119
            CS   + V            ++       T    LDL  N +  L   E     +L  L
Sbjct: 8   ECSAQDRAV---LCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 120 LLYSNSFSGKIPPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGS 177
            L  N  S  + P     L  L+ L +  N L   IP  +   L+ L +L I+  ++   
Sbjct: 62  ELNENIVS-AVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIV-I 118

Query: 178 IPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
           +   +  +L +L SL++  N L  +   A  G   L++       L      ++  L  L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296
            +L L + +++         L+ L+ L +    +   +         L  L ++  NL+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

Query: 297 SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
              L    L  L  L LS N  + +I          LQ++ L   +L+   P      + 
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
           L+ L++S N            +  L  L+L++N  
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (333), Expect = 1e-32
 Identities = 67/315 (21%), Positives = 113/315 (35%), Gaps = 13/315 (4%)

Query: 442 SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL 501
           ++P  +   +    +D   N       +      +L  L+L +N +S   P +      L
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFS 560
           + + L  N+L       F  LS L  + +  N     L   +FQ L  L+ +    N   
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLV 141

Query: 561 ----GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGK 616
                +   L    SL  L L   + +      L+    L  LRL H ++       F +
Sbjct: 142 YISHRAFSGLN---SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN 676
           L  L  L++S   +   + P       L  L +++  LT      +  L  +  L+LS N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 677 NFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQ 735
             +    + +    +L ++ L G  L+  + P     L  L VLN+  N L+    S   
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 736 QCKKLYELRLSENFF 750
               L  L L  N  
Sbjct: 318 SVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (330), Expect = 2e-32
 Identities = 67/317 (21%), Positives = 118/317 (37%), Gaps = 14/317 (4%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
            +P  +    +   LDL KN +            +LE L L++N  + ++      N  +
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFN 81

Query: 333 LQQLILARNKLSGEFPLELLR-CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
           L+ L L  N+L    PL +    S+L +LD+S+N     L      L  L  L + +N  
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 392 TGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTN 449
                      L+ LE L L    +T  IP E    L  L  + L    ++         
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
              L  ++     +  ++        NL  L +   +L+     ++ +   L+ + L+ N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 510 KLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYP--L 566
            +S         L  L  I L        + P  F+ L  LR++N S N+ + ++     
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLT-TLEESVF 316

Query: 567 TGSNSLTALDLTNNSFS 583
               +L  L L +N  +
Sbjct: 317 HSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (314), Expect = 3e-30
 Identities = 70/304 (23%), Positives = 109/304 (35%), Gaps = 16/304 (5%)

Query: 539 LPPSLFQLKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSELAMSRNL 596
           +P  +    + R+++   N+   ++          L  L+L  N  S   P       NL
Sbjct: 26  VPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 597 SRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSNNEL 654
             L L  N L   IP   F  L+ L  LD+S N     +   +      L  L + +N+L
Sbjct: 83  RTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140

Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNL 713
                     L  + +L L   N        + +   L+ L LR  N++  I       L
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRL 199

Query: 714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD-LGRLTELQVILDLSK 772
             L VL +        +         L  L ++    T ++P   +  L  L+  L+LS 
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRF-LNLSY 257

Query: 773 NNFSGEIPP-SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF 831
           N  S  I    L  LL+L+ + +   QL    P +   L  L VLN+S N L       F
Sbjct: 258 NPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 832 SGFP 835
               
Sbjct: 317 HSVG 320

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (310), Expect = 8e-30
 Identities = 67/308 (21%), Positives = 107/308 (34%), Gaps = 12/308 (3%)

Query: 523 SELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNN 580
           +E  L+ L  N  K            L  +  + N  S ++ P       +L  L L +N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 581 SFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ-LS 639
                         NL++L ++ N +   +   F  L  L  L++  N     I+ +  S
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 640 KCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRG 699
               L  L L    LT      L  L  +  L L   N N           +L  L +  
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 700 NNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFFTGSIPAD- 757
                 + P       L  L++   +L+  +P   ++    L  L LS N  + +I    
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

Query: 758 LGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVL 816
           L  L  LQ  + L     +  + P +   L  L  LN+S NQL     +    + +L  L
Sbjct: 268 LHELLRLQE-IQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 817 NLSNNHLQ 824
            L +N L 
Sbjct: 326 ILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 4/179 (2%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L L    L+   +    +L  L  L L   ++  +      +L  L++L +    +   +
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPH-IGNLTELRELAIAYCQLNGSIPVEI-GNLKHL 188
            P   +   L  L I    L   +P   + +L  LR L ++Y  ++ +I   +   L  L
Sbjct: 217 TPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRL 274

Query: 189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
             + L   +L+ + P A  G   L+    S N L     S    + +L+ L L +N L+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 741 YELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ 800
             +      F  ++P  +   T    +LDL KN           S   LE L ++ N + 
Sbjct: 14  RAVLCHRKRFV-AVPEGIPTETR---LLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 801 GQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
              P +   L +L  L L +N L+      F+G  
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  140 bits (353), Expect = 1e-34
 Identities = 83/410 (20%), Positives = 135/410 (32%), Gaps = 96/410 (23%)

Query: 89  LTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148
                 L++  + LT                          +P  +     +  L I DN
Sbjct: 39  NNGNAVLNVGESGLT-------------------------TLPDCLP--AHITTLVIPDN 71

Query: 149 LLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHG 208
            L   +P     L  L    ++  QL  S+PV    L  L+     +  L  L       
Sbjct: 72  NL-TSLPALPPELRTLE---VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS----- 121

Query: 209 CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN 268
                                      L  L +  N L+ S+PV       L+ L++  N
Sbjct: 122 --------------------------GLCKLWIFGNQLT-SLPVLPP---GLQELSVSDN 151

Query: 269 IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL 328
                +P+     ++L +L    N L+     L      L+ L +SDN    S+P     
Sbjct: 152 QLA-SLPAL---PSELCKLWAYNNQLTS----LPMLPSGLQELSVSDNQLA-SLPTLPS- 201

Query: 329 NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNN 388
               L +L    N+L+   P      S L++L +S N     LP    +L+EL    ++ 
Sbjct: 202 ---ELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLT-SLPVLPSELKELM---VSG 250

Query: 389 NSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMS---GSIPR 445
           N  T S P        L +L ++ N +T ++P  +  L + + + L  N +S       R
Sbjct: 251 NRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305

Query: 446 ELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASL 495
           E+T+  G +      +    S P     L       L       P PA  
Sbjct: 306 EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  137 bits (347), Expect = 9e-34
 Identities = 81/436 (18%), Positives = 149/436 (34%), Gaps = 93/436 (21%)

Query: 339 ARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE 398
           +R + +    +     +    L++ ++     LP  L     +T L++ +N+ T S P  
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPAL 79

Query: 399 IGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDF 458
              L  LE   +  N +T  +PV    L  LS            +P   +    L ++  
Sbjct: 80  PPELRTLE---VSGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSG---LCKLWI 128

Query: 459 FGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLT 518
           FGN  + S+P     L+ L    +  N L+  +PA      +L      +N+L+ S+P+ 
Sbjct: 129 FGNQLT-SLPVLPPGLQEL---SVSDNQLAS-LPALPSELCKLW---AYNNQLT-SLPML 179

Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
              L EL +    +N     LP    +L KL   N                N LT+L   
Sbjct: 180 PSGLQELSV---SDNQLAS-LPTLPSELYKLWAYN----------------NRLTSL--- 216

Query: 579 NNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQL 638
                   P+       L  L ++ N LT ++P    +L EL                  
Sbjct: 217 --------PALP---SGLKELIVSGNRLT-SLPVLPSELKELM----------------- 247

Query: 639 SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLR 698
                     +S N LT ++P     L     L +  N     +P  + + S    ++L 
Sbjct: 248 ----------VSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 699 GNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL 758
           GN LS +    +  +T+    +           S  ++ + L+    + ++   +   + 
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL--AAADWLVPAREGEP 350

Query: 759 GRLTELQVILDLSKNN 774
                  +       +
Sbjct: 351 APADRWHMFGQEDNAD 366

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  135 bits (341), Expect = 4e-33
 Identities = 73/348 (20%), Positives = 123/348 (35%), Gaps = 68/348 (19%)

Query: 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNN 533
                +L + ++ L+  +P  L     +  + + DN L+ S+P     L  L +     N
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPALPPELRTLEV---SGN 91

Query: 534 SFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS 593
                LP     L +L I +                + L  L +  N  +  +P      
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTS-LPVLPP-- 141

Query: 594 RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNE 653
             L  L ++ N L  ++P+   +L +L                              NN+
Sbjct: 142 -GLQELSVSDNQLA-SLPALPSELCKLW---------------------------AYNNQ 172

Query: 654 LTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL 713
           LT ++P     LQE   L +S N    ++P        L KL    N L+  +P     L
Sbjct: 173 LT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGL 223

Query: 714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKN 773
             L V     N L+ ++P    +   L EL +S N  T S+P     L  L     + +N
Sbjct: 224 KELIVSG---NRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSL----SVYRN 271

Query: 774 NFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
             +  +P SL  L     +N+  N L  +   +L ++TS    +    
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  133 bits (335), Expect = 2e-32
 Identities = 71/368 (19%), Positives = 129/368 (35%), Gaps = 58/368 (15%)

Query: 232 LLKSLQILNLANNSLSGSIPVEL------------------SHLFNLRYLNLLGNIFDGE 273
           L     +LN+  + L+ ++P  L                  +    LR L + GN     
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-S 95

Query: 274 IPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSL 333
           +P     L +L        +L             L  L +  N  T S+P+        L
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPVLP----PGL 143

Query: 334 QQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG 393
           Q+L ++ N+L+   P      S L +L   +N     LP     L+EL+   +++N    
Sbjct: 144 QELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQLA- 194

Query: 394 SFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGL 453
           S P     L KL     ++N +T  +P     L+ L    +  N+++ S+P   +    L
Sbjct: 195 SLPTLPSELYKLW---AYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPVLPSE---L 243

Query: 454 TEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSG 513
            E+   GN  + S+P        L+ L + +N L+  +P SL +      + L  N LS 
Sbjct: 244 KELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSE 298

Query: 514 SVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLT 573
                 R ++     +     F      S  +  +   +  +             ++   
Sbjct: 299 RTLQALREITSAPGYSGPIIRF-DMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

Query: 574 ALDLTNNS 581
                +N+
Sbjct: 358 MFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 2e-28
 Identities = 77/348 (22%), Positives = 118/348 (33%), Gaps = 47/348 (13%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
            H+  L +  + L+ S+         L TL++S N LT L P     L  L I       
Sbjct: 61  AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTH 115

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
                       + L  L I  N L   +P     L EL    ++  QL  S+P     L
Sbjct: 116 LP-------ALPSGLCKLWIFGNQL-TSLPVLPPGLQELS---VSDNQLA-SLPALPSEL 163

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
             L + + Q+  L  L          LQ+ + S+N L  ++P+    L  L   N    S
Sbjct: 164 CKLWAYNNQLTSLPMLPS-------GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS 215

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL 305
           L             L+ L + GN     +P   +   +L+EL +S N L+     L    
Sbjct: 216 LPALPS-------GLKELIVSGNRL-TSLPVLPS---ELKELMVSGNRLTS----LPMLP 260

Query: 306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365
             L +L +  N  T  +P     + SS   + L  N LS E  L+ LR  +         
Sbjct: 261 SGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPI 317

Query: 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN 413
                   S  +      L   +       P   G  +  +   +F  
Sbjct: 318 IRFDMAGASAPRETRALHLAAADW----LVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 2e-28
 Identities = 84/472 (17%), Positives = 155/472 (32%), Gaps = 73/472 (15%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
           E  +  +   +    + S+   +    +          L + ++  T ++P       + 
Sbjct: 7   EYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP---AH 62

Query: 333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT 392
           +  L++  N L+   P        L+ L++S N     LP     L EL+          
Sbjct: 63  ITTLVIPDNNLT-SLPALP---PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

Query: 393 GSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG 452
                     S L  L++F N +T  +PV    LQ L    + DNQ++ S+P   +    
Sbjct: 118 AL-------PSGLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE--- 162

Query: 453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLS 512
           L ++  + N  + S+P        L  L +  N L+  +P        L ++   +N+L+
Sbjct: 163 LCKLWAYNNQLT-SLPMLPS---GLQELSVSDNQLAS-LPTLPS---ELYKLWAYNNRLT 214

Query: 513 GSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL 572
            S+P     L EL    +  N     LP    +LK+L +                  N L
Sbjct: 215 -SLPALPSGLKELI---VSGNRLTS-LPVLPSELKELMV----------------SGNRL 253

Query: 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG 632
           T+L           P   +    L  L +  N LT  +P     L+    ++L  N  + 
Sbjct: 254 TSL-----------PMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS- 297

Query: 633 QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692
                L    ++      +  +         S        L     +  VPA  G  +  
Sbjct: 298 --ERTLQALREITSAPGYSGPII-RFDMAGASAPRETRA-LHLAAADWLVPAREGEPAPA 353

Query: 693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR 744
            +  + G   +        +  +     ++       I S + Q  +   LR
Sbjct: 354 DRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALR 405

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (288), Expect = 2e-26
 Identities = 63/333 (18%), Positives = 108/333 (32%), Gaps = 46/333 (13%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPS--EL-----------GQLQNLR 117
           L +S + L+ S+      L  L         L  L     +L                L+
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ 144

Query: 118 ILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGS 177
            L +  N  +  +P     L KL      +N L   +P     L EL    ++  QL  S
Sbjct: 145 ELSVSDNQLA-SLPALPSELCKLWAY---NNQL-TSLPMLPSGLQELS---VSDNQLA-S 195

Query: 178 IPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQ 237
           +P     L  L + + ++  L  L          L++   S N L  ++P        L+
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPALPS-------GLKELIVSGNRLT-SLPVLP---SELK 244

Query: 238 ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGS 297
            L ++ N L+ S+P+  S    L  L++  N     +P  L  L+    ++L  N LS  
Sbjct: 245 ELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

Query: 298 ISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILA-RNKLSGEFPLELLRCSS 356
                 ++ +                +         + L LA  + L      E      
Sbjct: 300 TLQALREITSAP---GYSGPII-RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

Query: 357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN 389
                  DN+        LD+L E  + + +  
Sbjct: 356 WHMFGQEDNA--DAFSLFLDRLSETENFIKDAG 386

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 6e-22
 Identities = 63/296 (21%), Positives = 106/296 (35%), Gaps = 31/296 (10%)

Query: 89  LTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148
              L+ L +S N L  L P+   +L  L     Y+N  +  +P        LQ L + DN
Sbjct: 140 PPGLQELSVSDNQLASL-PALPSELCKLW---AYNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 149 LLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHG 208
            L   +P     L +L        +L  S+P     L     L +  N+L+ L P     
Sbjct: 192 QL-ASLPTLPSELYKLWAY---NNRLT-SLPALPSGL---KELIVSGNRLTSL-PVLP-- 240

Query: 209 CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN 268
             EL++   S N L  ++P        L  L++  N L+  +P  L HL +   +NL GN
Sbjct: 241 -SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 269 IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL 328
                    L ++               + +    + + L             +P +   
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA-----DWLVPAREGE 349

Query: 329 NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDL 384
              + +  +  +   +  F L L R S  +   + D  FK ++   L +L E   L
Sbjct: 350 PAPADRWHMFGQEDNADAFSLFLDRLSETEN-FIKDAGFKAQISSWLAQLAEDEAL 404

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  135 bits (341), Expect = 1e-33
 Identities = 94/489 (19%), Positives = 176/489 (35%), Gaps = 37/489 (7%)

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
            +P ++   +  T L++  N +S L    I    +L+    S+N ++    S     + L
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDG-EIPSELNKLAQLEELDLSKNNLS 295
           + L+L++N L   I        NL++L+L  N FD   I  E   ++QL+ L LS  +L 
Sbjct: 72  EYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 296 GSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS 355
            S  L    L   + L++    +      +            L     + +    +L  S
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEG---LQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 356 SLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMI 415
                +L  ++ K               L  N  S+  S   ++    KL NL L +   
Sbjct: 186 VKTVANLELSNIKC-------------VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 416 TGKIPVEIGKLQTLSAI---YLYDNQMSGSIPRELTNCSG-----LTEIDFFGNHFSGSI 467
           T    + I +L   + +    + + ++ G +     + SG     L+      + F    
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 468 PETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYL 527
                   N+ I     +                  +  ++N L+ +V      L+EL  
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 528 ITLYNNSFKG-PLPPSLF-QLKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFS 583
           + L  N  K       +  Q+K L+ ++ S N  S        + + SL +L++++N  +
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 584 GPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAK 643
             I   L     +  L L  N +  +IP +  KL  L  L+++ N           +   
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469

Query: 644 LAHLLLSNN 652
           L  + L  N
Sbjct: 470 LQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  134 bits (340), Expect = 2e-33
 Identities = 92/504 (18%), Positives = 162/504 (32%), Gaps = 53/504 (10%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
                L +++N +S  +  ++L  S L+ L +S N  +          +EL  L L++N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITG-KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN 449
                         L++L L  N      I  E G +  L  + L    +  S    + +
Sbjct: 81  LV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
            +    +   G  +          L++     L     +      +          L  +
Sbjct: 138 LNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 510 KLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGS 569
            +   +           L  L  N     L         L  I  + N F   I  L   
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLT--------LNNIETTWNSFI-RILQLVWH 246

Query: 570 NSLTALDLTNNSFSGPIPSELAMS-----RNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
            ++    ++N    G +            + LS  ++  +         +   + +N  +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
            + +          SK +   HL  SNN LT                D    N       
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLT----------------DTVFENC------ 344

Query: 685 EIGNCSKLLKLSLRGNNLSGKIPPEIG---NLTALNVLNLQRNSLSGNIPSTI-QQCKKL 740
             G+ ++L  L L+ N L  ++         + +L  L++ +NS+S +         K L
Sbjct: 345 --GHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 741 YELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ 800
             L +S N  T +I      L     +LDL  N     IP  +  L  L+ LN++ NQL+
Sbjct: 402 LSLNMSSNILTDTIF---RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

Query: 801 GQVPASLGKLTSLHVLNLSNNHLQ 824
                   +LTSL  + L  N   
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  134 bits (338), Expect = 3e-33
 Identities = 86/468 (18%), Positives = 152/468 (32%), Gaps = 58/468 (12%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVLRIGDN 148
                L++S N ++ L  S++  L  LRIL++  N     +   +  F  +L+ L +  N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 149 LLWGEIPPHIGNLTELRELAIAYCQLNGSIPV--EIGNLKHLTSLDLQMNKLSGLIPEAI 206
            L  +I  H      L+ L +++   + ++P+  E GN+  L  L L    L       I
Sbjct: 80  KLV-KISCH--PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 207 HGCEELQKFAASNNMLEGTIPS---SIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYL 263
                 +                       +SL I+   N      + V +  + NL   
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 264 NLLGNIFDGEIPSELNKLA---------------------------------QLEELDLS 290
           N+   + D +    L+ LA                                  +    +S
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 291 KNNLSG-----SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSG 345
              L G           T LK L    +  + F       +    S++       +    
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY-EIFSNMNIKNFTVSGTRM 314

Query: 346 EFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG---NL 402
              L   + S    LD S+N     +  +   L EL  L+L  N               +
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQM 373

Query: 403 SKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGN 461
             L+ L +  N ++           ++L ++ +  N ++ +I R L     +  +D   N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431

Query: 462 HFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
               SIP+ + KL+ L  L +  N L             LQ+I L  N
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 1e-19
 Identities = 57/392 (14%), Positives = 132/392 (33%), Gaps = 19/392 (4%)

Query: 442 SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL 501
            +P++L+     T ++   N+ S      +  L  L IL +  N +     +   + + L
Sbjct: 14  HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNKF- 559
           + + L+ NKL     ++      L  + L  N+F        F  + +L+ +  S     
Sbjct: 72  EYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 560 SGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTE 619
             S+ P+   N    L +   ++      E      L        H+      EF  + +
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPE-----GLQDFNTESLHIVFPTNKEFHFILD 183

Query: 620 LNFLDLSFNSFTG-QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
           ++   ++    +  +   + +KC+    +L             L +++      +     
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK 738
                    +   +  + L+G            +L AL++  +  +          +   
Sbjct: 244 VWHTTVWYFS---ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 739 KLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ 798
            +     + +           +++     LD S N  +  +  + G L +LE L +  NQ
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLH-LDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 799 LQ--GQVPASLGKLTSLHVLNLSNNHLQGQLP 828
           L+   ++     ++ SL  L++S N +     
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.1 bits (213), Expect = 2e-17
 Identities = 55/329 (16%), Positives = 93/329 (28%), Gaps = 31/329 (9%)

Query: 530 LYNNSFKGPLPPSLFQLKKLRIINFSHNKFS----GSIYPLTGSNSLTALDLTNNSFSGP 585
           +  N         +  L KLRI+  SHN+                 L  LDL++N     
Sbjct: 28  ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ---ELEYLDLSHNKLVKI 84

Query: 586 IPSELAMSRNLSRLRLAHNHLTG-NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKL 644
                    NL  L L+ N      I  EFG +++L FL LS           ++     
Sbjct: 85  SCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141

Query: 645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG 704
             LL+               LQ+     L            I + S     +L  +N+  
Sbjct: 142 KVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199

Query: 705 -----------KIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQC---KKLYELRLSENFF 750
                       I  ++     L+ L L     + N    I Q      ++   +S    
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 751 TGSIPADLGRLTELQV----ILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPAS 806
            G +       +   +    I  +  + F             +   N + +  +      
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 807 LGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
             K++    L+ SNN L   +        
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLT 348

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 41/211 (19%), Positives = 86/211 (40%), Gaps = 10/211 (4%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
           K +    + S       S  +   +++   + + +    +      ++     L   +N 
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIG---NLTELRELAIAYCQLNGSIPVEI 182
            +  +    G L +L+ L +  N L  E+         +  L++L I+   ++       
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

Query: 183 -GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241
               K L SL++  N L+  I   +     ++     +N ++ +IP  +V L++LQ LN+
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451

Query: 242 ANNSLSGSIPVE-LSHLFNLRYLNLLGNIFD 271
           A+N L  S+P      L +L+ + L  N +D
Sbjct: 452 ASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.9 bits (184), Expect = 4e-14
 Identities = 65/314 (20%), Positives = 122/314 (38%), Gaps = 27/314 (8%)

Query: 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG 632
             +D + N     +P +L  S+  + L ++ N+++    S+   L++L  L +S N    
Sbjct: 3   FLVDRSKNGLIH-VPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 633 QIAPQLSKCAKLAHLLLSNNELTGTIPF-WLGSLQEIGELDLSSNNFNG-TVPAEIGNCS 690
                     +L +L LS+N+L   I      +L+    LDLS N F+   +  E GN S
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KISCHPTVNLKH---LDLSFNAFDALPICKEFGNMS 115

Query: 691 KLLKLSLRGNNLSGKIPPEIGNLTALNV-LNLQRNSLSGNIPSTIQQC--KKLYELRLSE 747
           +L  L L   +L       I +L    V L L         P  +Q    + L+ +  + 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 748 NFFTGSIPADLG-----RLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQ 802
             F   +   +       L+ ++ +L+ +K ++   I   L +  KL  L ++  +    
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 803 VPASLGKL---TSLHVLNLSNNHLQGQLPLTFSGFPLSSF-------LGNAKLCGPPLLS 852
               + +L   T++   ++SN  LQGQL      +  +S        + +     P    
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 853 CSELSGQKVKRLSN 866
               S   +K  + 
Sbjct: 296 YEIFSNMNIKNFTV 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  131 bits (331), Expect = 2e-32
 Identities = 74/420 (17%), Positives = 142/420 (33%), Gaps = 44/420 (10%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
              ++  +  + +     L +L +LD  ++S+T +  + + +L  L  L+  SN+ +   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT-- 78

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
             ++     L  L    N L   +   +  LT+L  L     +L     +++     LT 
Sbjct: 79  -LDLSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTY 131

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           L+   N L+ +    +    +L +     N         +     L  L+ + N ++   
Sbjct: 132 LNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE-- 184

Query: 251 PVELSHLFNLRYLNLLGNIFDGEIPS-ELNKLAQLEELDLSKNNLSGSISLLNTQLKNLE 309
            +++S    L  LN   N     I   +LN+  QL  LD S N L+  I +  T L  L 
Sbjct: 185 -LDVSQNKLLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKLT-EIDV--TPLTQLT 236

Query: 310 TLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKG 369
               S N  T  + +      S L  L   +  L     ++L   + L            
Sbjct: 237 YFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIK 289

Query: 370 ELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTL 429
           EL   +    +L  L       T     ++    KL  L+L +  +T ++   +     L
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKL 341

Query: 430 SAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSG 489
            ++   +  +       +     L               ET+      + +     D  G
Sbjct: 342 KSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  121 bits (305), Expect = 3e-29
 Identities = 73/459 (15%), Positives = 166/459 (36%), Gaps = 43/459 (9%)

Query: 164 LRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLE 223
                 A  ++  +  +    L  LTSLD   + ++ +    I     L K   ++N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 224 GTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQ 283
            T+   +    +L  L   +N L+    ++++ L  L YLN   N        ++++   
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKL---TKLDVSQNPL 128

Query: 284 LEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL 343
           L  L+ ++N L+    +  +    L  L    N     + +      + L  L  + NK+
Sbjct: 129 LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKI 182

Query: 344 SGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLS 403
           +    L++ +   L +L+   N+   +L   L++  +LT L  ++N  T     ++  L+
Sbjct: 183 TE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEI---DVTPLT 233

Query: 404 KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHF 463
           +L       N +T    +++  L  L+ ++     +   I   LT+ + L      G   
Sbjct: 234 QLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRK 287

Query: 464 SGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLS 523
              +   +     L +L  +   ++      L    +L  + L + +L+    L     +
Sbjct: 288 IKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTE---LDVSHNT 339

Query: 524 ELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFS 583
           +L  ++  N   +     S+ ++  L     +  +   ++   T +N+   + ++ +   
Sbjct: 340 KLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLD 396

Query: 584 GPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNF 622
                      +      A N +T    S         F
Sbjct: 397 QFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTF 435

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (301), Expect = 1e-28
 Identities = 92/397 (23%), Positives = 153/397 (38%), Gaps = 49/397 (12%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+  +S ++  ++     LT L  L  +SN++T L   +L Q  NL  L   SN  +   
Sbjct: 47  LDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-- 99

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
             ++  L KL  L    N L  ++   +     L  L  A   L     +++ +   LT 
Sbjct: 100 -LDVTPLTKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTE 152

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           LD  +NK    +   +    +L     S N +       +   K L  LN   N+++   
Sbjct: 153 LDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK-- 205

Query: 251 PVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLET 310
            ++L+    L +L+   N    EI   +  L QL   D S N L+    L  + L  L T
Sbjct: 206 -LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTT 258

Query: 311 LVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE 370
           L          I +    +N+ L        +   E  L++   + L  LD        E
Sbjct: 259 LHCIQTDLL-EIDL---THNTQLIYFQAEGCRKIKE--LDVTHNTQLYLLDCQAAGIT-E 311

Query: 371 LPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLS 430
           L   L +  +L  L LNN   T      + + +KL++L   +  I       +GK+  L+
Sbjct: 312 LD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALN 364

Query: 431 AIYLYDNQMSGSIPRE------LTNCSGLTEIDFFGN 461
             +  + Q   ++P+E      LT       +D FGN
Sbjct: 365 NNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGN 400

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (296), Expect = 4e-28
 Identities = 69/401 (17%), Positives = 132/401 (32%), Gaps = 45/401 (11%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
           N  S         +   +   +L  L +L     +++S +      I  L  L  L    
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLD---CHNSSITD--MTGIEKLTGLTKLICTS 73

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
           N +   +   +   T L  LA    +L     +++  L  LT L+   NKL+ L    + 
Sbjct: 74  NNI-TTLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKL---DVS 124

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
               L     + N L   I  S      L  L+   N     +   ++    L  L+   
Sbjct: 125 QNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179

Query: 268 NIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFC 327
           N        ++++   L  L+   NN++  + L   Q   L  L  S N  T  I +   
Sbjct: 180 NKITE---LDVSQNKLLNRLNCDTNNIT-KLDL--NQNIQLTFLDCSSNKLT-EIDVT-- 230

Query: 328 LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLN 387
              + L     + N L+    L++   S L  L         E+   L    +L      
Sbjct: 231 -PLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAE 283

Query: 388 NNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPREL 447
                     ++ + ++L  L      IT    +++ +   L  +YL + +++  +   +
Sbjct: 284 GCRKIKE--LDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--V 335

Query: 448 TNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
           ++ + L  +     H        +GK+  L      +    
Sbjct: 336 SHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (294), Expect = 9e-28
 Identities = 72/417 (17%), Positives = 132/417 (31%), Gaps = 42/417 (10%)

Query: 114 QNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQ 173
            N    +  +             L  L  L   ++ +       I  LT L +L      
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNN 75

Query: 174 LNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLL 233
           +     +++    +LT L    NKL+ L    +    +L       N L     S     
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQ---N 126

Query: 234 KSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN 293
             L  LN A N+L+    +++SH   L  L+   N        ++    QL  LD S N 
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNK 181

Query: 294 LSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLR 353
           ++  + +  +Q K L  L    N  T  + +     N  L  L  + NKL+    +++  
Sbjct: 182 IT-ELDV--SQNKLLNRLNCDTNNIT-KLDLN---QNIQLTFLDCSSNKLTE---IDVTP 231

Query: 354 CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN 413
            + L   D S N    EL  S   L +LT L             ++ + ++L        
Sbjct: 232 LTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGC 285

Query: 414 MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGK 473
               ++  ++     L  +      ++  +   L+    L  +       +  +   +  
Sbjct: 286 RKIKEL--DVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSH 337

Query: 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL 530
              L  L      +      S+G    L     A+ +       T    S    ++ 
Sbjct: 338 NTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  116 bits (292), Expect = 1e-27
 Identities = 78/485 (16%), Positives = 153/485 (31%), Gaps = 89/485 (18%)

Query: 259 NLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAF 318
           N                    +LA L  LD   ++++  ++ +  +L  L  L+ + N  
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGI-EKLTGLTKLICTSNNI 76

Query: 319 TGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKL 378
           T ++ +     N++L  L    NKL+    L++   + L  L+   N    +L  S  + 
Sbjct: 77  T-TLDLS---QNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT-KLDVS--QN 126

Query: 379 EELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQ 438
             LT L    N+ T     ++ + ++L  L    N    K+   +     L+ +    N+
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 439 MSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYC 498
                         +TE+D               + K L  L    N+++      L   
Sbjct: 182 --------------ITELDV-------------SQNKLLNRLNCDTNNITKL---DLNQN 211

Query: 499 KRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNK 558
            +L  +  + NKL+  + +T                           L +L   + S N 
Sbjct: 212 IQLTFLDCSSNKLT-EIDVT--------------------------PLTQLTYFDCSVNP 244

Query: 559 FSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLT 618
              +   ++  + LT L             E+ ++ N   +             +    T
Sbjct: 245 L--TELDVSTLSKLTTLHCIQTDL-----LEIDLTHNTQLIYFQAEGCRKIKELDVTHNT 297

Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
           +L  LD      T      LS+  KL +L L+N ELT  +   +    ++  L   + + 
Sbjct: 298 QLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI 351

Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK 738
                  +G    L                 + N +    ++       GN  +      
Sbjct: 352 Q-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDG 409

Query: 739 KLYEL 743
            +Y+ 
Sbjct: 410 GVYDQ 414

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  113 bits (284), Expect = 2e-26
 Identities = 80/417 (19%), Positives = 149/417 (35%), Gaps = 41/417 (9%)

Query: 429 LSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
            ++      +M  +        + LT +D   +  +  +   + KL  L  L    N+++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNIT 77

Query: 489 GPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKK 548
                 L     L  +A   NKL+    L    L++L  +    N     L  S  Q   
Sbjct: 78  TL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT-KLDVS--QNPL 128

Query: 549 LRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTG 608
           L  +N + N  +     ++ +  LT LD   N     +   +     L+ L  + N +T 
Sbjct: 129 LTYLNCARNTLT--EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE 184

Query: 609 NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEI 668
               +  +   LN L+   N+ T      L++  +L  L  S+N+LT  I      L ++
Sbjct: 185 ---LDVSQNKLLNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLT-EIDV--TPLTQL 235

Query: 669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG 728
              D S N     +   +   SKL  L     +L  +I   + + T L     +      
Sbjct: 236 TYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIK 289

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLK 788
            +   +    +LY L       T  +  DL +  +L   L L+    + E+   +    K
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGIT-EL--DLSQNPKLVY-LYLNNTELT-ELD--VSHNTK 340

Query: 789 LERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKL 845
           L+ L+     +Q    +S+GK+ +L+    +          T +   L+  +    L
Sbjct: 341 LKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 6e-18
 Identities = 59/314 (18%), Positives = 106/314 (33%), Gaps = 37/314 (11%)

Query: 546 LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH 605
                   F                +LT+LD  N+S +    + +     L++L    N+
Sbjct: 20  FASEVAAAFEMQATD--TISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75

Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSL 665
           +T  +     + T L +L    N  T      ++   KL +L    N+LT         L
Sbjct: 76  IT-TLD--LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 666 QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNS 725
                L+ + N        ++ + ++L +L    N        ++   T L  L+   N 
Sbjct: 130 TY---LNCARNTLT---EIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNK 181

Query: 726 LSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS 785
           ++      + Q K L  L    N  T     DL +  +L   LD S N  + EI   +  
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTF-LDCSSNKLT-EID--VTP 231

Query: 786 LLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFL---GN 842
           L +L   + S N L       +  L+ L  L+     L     +  +      +    G 
Sbjct: 232 LTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGC 285

Query: 843 AKLCGPPLLSCSEL 856
            K+    +   ++L
Sbjct: 286 RKIKELDVTHNTQL 299

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 25/177 (14%), Positives = 55/177 (31%), Gaps = 34/177 (19%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           +   + G       D  + T L  LD  +  +T L   +L Q   L  L L +   +   
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT--- 331

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
                                 E+   + + T+L+ L+     +       +G +  L +
Sbjct: 332 ----------------------ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNN 365

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
                 +   +  E +         A S ++L+       +      + + A N+++
Sbjct: 366 NFEAEGQTITMPKETLT--NNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  128 bits (323), Expect = 1e-31
 Identities = 79/405 (19%), Positives = 132/405 (32%), Gaps = 58/405 (14%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVLRIGDN 148
             +  +DLS NS+  L  +   +LQ+L+ L +   +    I       L+ L +L++  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 149 LLWGEIPPHI-GNLTELRELAIAYCQLNGS-IPVEI-GNLKHLTSLDLQMNKLSGLIPEA 205
               ++       L  L  L +  C L+G+ +       L  L  L L+ N +  + P +
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 206 IHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS----------GSIPVELS 255
                    F                 ++   +L+L  N +                 L 
Sbjct: 149 F--------FLN---------------MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 256 HLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGS-------------ISLLN 302
            L ++   ++       E      K   +  LDLS N    S             I  L 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 303 TQLKNLETLVLSDNAFTGSIPIKFC-LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLD 361
                          F       F  L  S ++   L+++K+           + L+QL 
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 362 LSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIP 420
           L+ N        +   L  L  L L+ N    S    +  NL KLE L L  N I   + 
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LG 363

Query: 421 VEI-GKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHF 463
            +    L  L  + L  NQ+  S+P       + L +I    N +
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (305), Expect = 3e-29
 Identities = 77/377 (20%), Positives = 133/377 (35%), Gaps = 40/377 (10%)

Query: 71  LNLSSSGLSGSISRD-FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK 129
           L +        I  + F  L+SL  L L  N    L       L NL +L L   +  G 
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118

Query: 130 IPPEIGF--LNKLQVLRIGDNLLWGEIPPHI--GNLTELRELAIAYCQLNGSIPVEI--- 182
           +     F  L  L++L + DN +  +I P     N+     L + + ++  SI  E    
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLN 176

Query: 183 GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLA 242
              KH T L L    L  +                +   L      +     S+  L+L+
Sbjct: 177 FQGKHFTLLRLSSITLQDM----------------NEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 243 NNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
            N    S+            +  L       + S        +  + +   L  S     
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS----- 275

Query: 303 TQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDL 362
                ++T  LS +    ++      + + L+QL LA+N+++          + L +L+L
Sbjct: 276 ----GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 363 SDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIPV 421
           S N       R  + L++L  L L+ N    +   +    L  L+ L L  N +   +P 
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPD 388

Query: 422 EI-GKLQTLSAIYLYDN 437
            I  +L +L  I+L+ N
Sbjct: 389 GIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (291), Expect = 2e-27
 Identities = 87/411 (21%), Positives = 151/411 (36%), Gaps = 47/411 (11%)

Query: 428 TLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPE-TMGKLKNLVILQLRQND 486
            ++ + L  N ++       +    L  +          I   T   L +L+IL+L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 487 LSGPIPASLGYCKRLQQIALADNKLSGSV--PLTFRFLSELYLITLYNNSFKGPLPPSLF 544
                  +      L+ + L    L G+V     F+ L+ L ++ L +N+ K   P S F
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 545 Q-LKKLRIINFSHNKFS----GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRL 599
             +++  +++ + NK        +    G +  T L L++ +                  
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKH-FTLLRLSSITL----------------Q 193

Query: 600 RLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK---CAKLAHLLLSNNELTG 656
            +    L         K T +  LDLS N F   +A +        K+  L+LSN+   G
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTA 715
           +      S       D  +  F G         S +    L  + +   +   +  + T 
Sbjct: 254 S------SFGHTNFKDPDNFTFKGL------EASGVKTCDLSKSKIF-ALLKSVFSHFTD 300

Query: 716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL-GRLTELQVILDLSKNN 774
           L  L L +N ++    +       L +L LS+NF   SI + +   L +L+V LDLS N+
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEV-LDLSYNH 358

Query: 775 FSGEIPP-SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
               +   S   L  L+ L +  NQL+        +LTSL  + L  N   
Sbjct: 359 IR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 51/284 (17%), Positives = 91/284 (32%), Gaps = 34/284 (11%)

Query: 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNS 629
            +  +DL+ NS +    +  +  ++L  L++        I +  F  L+ L  L L +N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 630 FTGQIAPQLSKCAKLAHLLLSNNELTGTI--PFWLGSLQEIGELDLSSNNFNGTVPAEI- 686
           F        +  A L  L L+   L G +    +   L  +  L L  NN     PA   
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
            N  +   L L  N +   I  E   L      +     LS                 ++
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEED--LLNFQGKHFTLLRLSSI-----------TLQDMN 196

Query: 747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL-------------N 793
           E +       +  + T +   LDLS N F   +       +   ++             +
Sbjct: 197 EYWLGWEKCGNPFKNTSIT-TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 794 ISYNQLQGQVPASLGKL--TSLHVLNLSNNHLQGQLPLTFSGFP 835
             +   +     +   L  + +   +LS + +   L   FS F 
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 49/279 (17%), Positives = 91/279 (32%), Gaps = 46/279 (16%)

Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSNNE 653
           +++ + L+ N +     + F +L +L FL +   +    I        + L  L L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 654 LTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL-SGKIPPEI-G 711
                              L +  FNG         + L  L+L   NL    +      
Sbjct: 91  FL----------------QLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFK 126

Query: 712 NLTALNVLNLQRNSLSGNIPSTI-QQCKKLYELRLSENFFTGSIPADLGRLTELQV-ILD 769
            LT+L +L L+ N++    P++     ++ + L L+ N        DL         +L 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPL 829
           LS                     +++   L  +   +  K TS+  L+LS N  +  +  
Sbjct: 187 LSSITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 830 TFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTA 868
            F      + + +  L     +  S       K   N  
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSS-FGHTNFKDPDNFT 268

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  127 bits (320), Expect = 1e-30
 Identities = 93/487 (19%), Positives = 165/487 (33%), Gaps = 51/487 (10%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDN 413
              + L LS NS        +  L EL  L L++N    S    +      LE L +  N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 414 MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR--ELTNCSGLTEIDFFGNHFSGSIPETM 471
            +   I      + +L  + L  N     +P   E  N + LT +      F       +
Sbjct: 111 RLQ-NIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 472 GKLK-NLVILQLRQNDLSGPIPASL--GYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
             L  + ++L L    + G    SL       L  +   ++  S  V ++   L  L L 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 529 TLYNNSFKGPLPPSLFQ--LKKLRIINFSHNKFSGS------IYPLTGSNSLTALDLTNN 580
            +  N        +      +   ++N +      +      ++       +  L++ N 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 581 SFSGPIPSELAMS-----RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
           + +  I  E         ++L    + +     +  + +    E+N   LS +       
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
                 +    L  + N  T ++     +L+ +  L L  N                 K+
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-----------KNFFKV 395

Query: 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSL-SGNIPSTIQQCKKLYELRLSENFFTGSI 754
           +L              N+++L  L++  NSL S     T    + +  L LS N  TGS+
Sbjct: 396 ALM-----------TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 755 PADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLH 814
                 L     +LDL  N     IP  +  L  L+ LN++ NQL+        +LTSL 
Sbjct: 445 FR---CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 815 VLNLSNN 821
            + L +N
Sbjct: 501 YIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  124 bits (312), Expect = 1e-29
 Identities = 92/503 (18%), Positives = 176/503 (34%), Gaps = 61/503 (12%)

Query: 53  MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQ 112
           +        S++ + +V  + S+  L+  + +D       + L LS NS++ L   ++  
Sbjct: 20  LIVGSMTPFSNELESMV--DYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISF 74

Query: 113 LQNLRILLLYSNSFSGKIPPEI-GFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAY 171
           L  LR+L L  N     +   +  F   L+ L +  N L   I      +  LR L +++
Sbjct: 75  LSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSF 130

Query: 172 CQLNGSIPV--EIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAA-SNNMLEGTIPS 228
              +  +PV  E GNL  LT L L   K   L    +             +  ++G    
Sbjct: 131 NDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 229 SIVLLKS--LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELN------- 279
           S+ +  +  L ++   N+  S  + + ++ L +L+  N+  N  + +             
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 280 ------------------------KLAQLEELDLSKNNLSGSI-----SLLNTQLKNLET 310
                                       +E L++    ++  I     +   T LK+L  
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309

Query: 311 LVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE 370
             + +  F  S    +    + +   +L+ +       +     SS   L+ + N F   
Sbjct: 310 EHVKNQVFLFSKEALY-SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 371 LPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMIT----GKIPVEIGKL 426
           + +    L+ L  L+L  N    +F         + +L   D  +               
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 427 QTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQND 486
           +++  + L  N ++GS+ R L     +  +D   N    SIP+ +  L+ L  L +  N 
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484

Query: 487 LSGPIPASLGYCKRLQQIALADN 509
           L             LQ I L DN
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  116 bits (292), Expect = 4e-27
 Identities = 90/477 (18%), Positives = 175/477 (36%), Gaps = 35/477 (7%)

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSI-VLLKS 235
            +P ++       +L L  N +S L    I    EL+    S+N +  ++   + +  + 
Sbjct: 45  HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101

Query: 236 LQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIP--SELNKLAQLEELDLSKNN 293
           L+ L++++N L  +I      + +LR+L+L  N FD  +P   E   L +L  L LS   
Sbjct: 102 LEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAK 157

Query: 294 L-SGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFP---L 349
                +  +     +   L L      G       + N+++  L+   N L        +
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 350 ELLRCSSLQQLDLSDNSFKG--ELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNL---SK 404
             L    L  + L+D + +        L +   L ++ L +   T     ++        
Sbjct: 218 NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277

Query: 405 LENLFLFDNMITGKIPVEIG-----KLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFF 459
           +E L +++  IT +I  E        L++L   ++ +     S     +  + +      
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 460 GNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTF 519
            +              +   L   QN  +  +       KRLQ + L  N L  +     
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVA 396

Query: 520 RFLSELYLITLYNNSFKGPLPPSLFQ-----LKKLRIINFSHNKFSGSIYPLTGSNSLTA 574
                +  +   + S    L    +       + + ++N S N  +GS++       +  
Sbjct: 397 LMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLPPKVKV 454

Query: 575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNSF 630
           LDL NN     IP ++   + L  L +A N L  ++P   F +LT L ++ L  N +
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.2 bits (208), Expect = 8e-17
 Identities = 69/347 (19%), Positives = 112/347 (32%), Gaps = 24/347 (6%)

Query: 506 LADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNKFSG-SI 563
           L+ N +S        FLSEL ++ L +N  +  L   +F   + L  ++ SHN+    S 
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNISC 117

Query: 564 YPLTGSNSLTALDLTNNSF-SGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNF 622
            P+    SL  LDL+ N F   P+  E      L+ L L+              L     
Sbjct: 118 CPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI 174

Query: 623 LDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG-- 680
           L    +        +  +      L L  +  +        S+  +G L LS+   N   
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 681 -----TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL---TALNVLNLQRNSLSGNIPS 732
                T  +E+     LL ++L+    + K   ++        +  LN+   +++  I  
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 733 TIQQC-----KKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL 787
                     K L    +    F  S  A      E+  I  LS ++          S  
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN-IKMLSISDTPFIHMVCPPSPS 353

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGF 834
               LN + N     V      L  L  L L  N L+          
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMT 399

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 24/252 (9%)

Query: 67  HVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSF 126
           ++  L ++        +     L SL    + +        +       + I +L  +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 127 SGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLK 186
                      +    L    N+    +      L  L+ L +    L  +        K
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400

Query: 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL 246
           +++SL+     L                    N++       +    +S+ +LNL++N L
Sbjct: 401 NMSSLETLDVSL--------------------NSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 247 SGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLK 306
           +GS+   L     ++ L+L  N     IP ++  L  L+EL+++ N L      +  +L 
Sbjct: 441 TGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

Query: 307 NLETLVLSDNAF 318
           +L+ + L DN +
Sbjct: 498 SLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 59/311 (18%), Positives = 106/311 (34%), Gaps = 47/311 (15%)

Query: 570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629
              + +D +N + +  +P +L        L L+ N ++     +   L+EL  L LS N 
Sbjct: 31  ELESMVDYSNRNLTH-VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87

Query: 630 FTGQIAPQLSKCAKLAHLLLSNNELTGTIPF-WLGSLQEIGELDLSSNNFNG-TVPAEIG 687
                         L +L +S+N L   I    + SL+    LDLS N+F+   V  E G
Sbjct: 88  IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRH---LDLSFNDFDVLPVCKEFG 143

Query: 688 NCSKLLKLSLRGNNLSGKIPPEIGNL-TALNVLNLQRNSLSGNIPSTIQ--QCKKLYELR 744
           N +KL  L L            + +L  +  +L+L    + G    ++Q      L+ + 
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 745 LSENFFTGSIPADLGRLTELQVI---------------------------LDLSKNNFSG 777
              + F+  +   +  L  LQ+                            + L     + 
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 778 EIPPSLGSLLK---LERLNISYNQLQGQVP-----ASLGKLTSLHVLNLSNNHLQGQLPL 829
           +    L        +E LNI    +  ++       S   L SL + ++ N         
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 830 TFSGFPLSSFL 840
            +S F   +  
Sbjct: 324 LYSVFAEMNIK 334

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 10/181 (5%)

Query: 689 CSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748
                 +     NL+  +P ++        L+L +NS+S      I    +L  LRLS N
Sbjct: 30  NELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86

Query: 749 FFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG-QVPAS 806
               S+   +     +L+  LD+S N     I      +  L  L++S+N      V   
Sbjct: 87  RIR-SLDFHVFLFNQDLE-YLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKE 141

Query: 807 LGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSN 866
            G LT L  L LS    +    L  +   LS  L +             L       L  
Sbjct: 142 FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201

Query: 867 T 867
            
Sbjct: 202 V 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (288), Expect = 7e-28
 Identities = 65/335 (19%), Positives = 126/335 (37%), Gaps = 47/335 (14%)

Query: 235 SLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNL 294
            L+++  ++  L   +P +L    +   L+L  N        +   L  L  L L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 295 SGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRC 354
           S                 +S  AF              L++L L++N+L  E P ++ + 
Sbjct: 89  S----------------KISPGAFAPL---------VKLERLYLSKNQLK-ELPEKMPK- 121

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE--IGNLSKLENLFLFD 412
            +LQ+L + +N          + L ++  + L  N    S         + KL  + + D
Sbjct: 122 -TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 413 NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSGSIPETM 471
             IT  IP   G   +L+ ++L  N+++  +    L   + L ++    N  S     ++
Sbjct: 181 TNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 472 GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSG------SVPLTFRFLSEL 525
               +L  L L  N L   +P  L   K +Q + L +N +S         P      +  
Sbjct: 237 ANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295

Query: 526 YLITLYNNSFK-GPLPPSLFQ-LKKLRIINFSHNK 558
             ++L++N  +   + PS F+ +     +   + K
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (271), Expect = 1e-25
 Identities = 65/309 (21%), Positives = 115/309 (37%), Gaps = 29/309 (9%)

Query: 54  CSWHGVTCSDDQ---------KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTG 104
           C    V CSD                L+L ++ ++     DF NL +L TL L +N ++ 
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 105 LIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHI-GNLTE 163
           + P     L  L  L L  N    ++P        LQ LR+ +N +  ++   +   L +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEI-TKVRKSVFNGLNQ 146

Query: 164 LRELAIAYCQLNGSIPVEIG---NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNN 220
           +  + +    L  S  +E G    +K L+ + +    ++ +         EL       N
Sbjct: 147 MIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGN 202

Query: 221 MLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNK 280
            +     +S+  L +L  L L+ NS+S      L++  +LR L+L  N    ++P  L  
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 281 LAQLEELDLSKNNLSG------SISLLNTQLKNLETLVLSDNAFT-GSIPIKFCLNNSSL 333
              ++ + L  NN+S            NT+  +   + L  N      I           
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 334 QQLILARNK 342
             + L   K
Sbjct: 322 AAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (269), Expect = 2e-25
 Identities = 65/309 (21%), Positives = 111/309 (35%), Gaps = 41/309 (13%)

Query: 523 SELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTN 579
            +  L+ L NN     +    F+ LK L  +   +NK S  I P        L  L L+ 
Sbjct: 52  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 580 NSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNSFT-GQIAPQ 637
           N     +P ++   + L  LR+  N +T  +    F  L ++  ++L  N      I   
Sbjct: 110 NQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 638 -LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-GNCSKLLKL 695
                 KL+++ +++  +T TIP   G    + EL L  N     V A      + L KL
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKL 221

Query: 696 SLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSI 754
            L  N++S  +      N   L  L+L  N L   +P  +   K +  + L  N  +   
Sbjct: 222 GLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS--- 276

Query: 755 PADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQV--PASLGKLTS 812
                          +  N+F    P           +++  N +Q     P++   +  
Sbjct: 277 --------------AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 813 LHVLNLSNN 821
              + L N 
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (269), Expect = 2e-25
 Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 20/278 (7%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
                 LDL NN  +     +    +NL  L L +N ++   P  F  L +L  L LS N
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF-NGTVPAEI- 686
               ++  ++ K   L  L +  NE+T         L ++  ++L +N   +  +     
Sbjct: 111 QLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
               KL  + +   N++  IP   G   +L  L+L  N ++    ++++    L +L LS
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224

Query: 747 ENFFTGSIPAD-LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG---- 801
            N  + ++    L     L+  L L+ N    ++P  L     ++ + +  N +      
Sbjct: 225 FNSIS-AVDNGSLANTPHLRE-LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 802 --QVPASLGKLTSLHVLNLSNNHLQGQL--PLTFSGFP 835
               P    K  S   ++L +N +Q     P TF    
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 62/305 (20%), Positives = 110/305 (36%), Gaps = 44/305 (14%)

Query: 432 IYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPI 491
           + L +N+++     +  N   L  +    N  S   P     L  L  L L +N L   +
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115

Query: 492 PASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK-GPLPPSLFQ-LKKL 549
           P  +   K LQ++ + +N+++      F  L+++ ++ L  N  K   +    FQ +KKL
Sbjct: 116 PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 550 RIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN 609
             I  +    +                +                 +L+ L L  N +T  
Sbjct: 174 SYIRIADTNIT---------------TIPQGLPP-----------SLTELHLDGNKIT-K 206

Query: 610 IPSE-FGKLTELNFLDLSFNSFTGQIAPQ-LSKCAKLAHLLLSNNELTGTIPFWLGSLQE 667
           + +     L  L  L LSFNS +  +    L+    L  L L+NN+L   +P  L   + 
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264

Query: 668 IGELDLSSNNFNG------TVPAEIGNCSKLLKLSLRGNNLS-GKIPPEI-GNLTALNVL 719
           I  + L +NN +         P      +    +SL  N +   +I P     +     +
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 720 NLQRN 724
            L   
Sbjct: 325 QLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 753 SIPADLGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVPASLGKLT 811
            +P DL   T    +LDL  N  + EI      +L  L  L +  N++    P +   L 
Sbjct: 45  KVPKDLPPDTA---LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100

Query: 812 SLHVLNLSNNHLQ 824
            L  L LS N L+
Sbjct: 101 KLERLYLSKNQLK 113

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (285), Expect = 1e-27
 Identities = 55/235 (23%), Positives = 88/235 (37%), Gaps = 8/235 (3%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIGD 147
           +S   L+L SN L  L      +L  L  L L SN  S K            L+ L +  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAI 206
           N +   +  +   L +L  L   +  L       +  +L++L  LD+             
Sbjct: 88  NGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 207 HGCEELQKFA-ASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLN 264
           +G   L+    A N+  E  +P     L++L  L+L+   L   +     + L +L+ LN
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 265 LLGNIFDGEIPSELNKLAQLEELDLSKNNLSG-SISLLNTQLKNLETLVLSDNAF 318
           +  N F          L  L+ LD S N++       L     +L  L L+ N F
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (266), Expect = 3e-25
 Identities = 66/261 (25%), Positives = 103/261 (39%), Gaps = 14/261 (5%)

Query: 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN-- 628
           S T +   +   +  +P+ +    + +RL L  N L       F KLT+L  L LS N  
Sbjct: 8   SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-G 687
           SF G  +        L +L LS N +  T+      L+++  LD   +N        +  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 688 NCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTI-QQCKKLYELRL 745
           +   L+ L +   +        I   L++L VL +  NS   N    I  + + L  L L
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 746 SENFFTGSIPAD-LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP 804
           S+      +       L+ LQV L++S NNF          L  L+ L+ S N +     
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQV-LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 805 ASLGKL-TSLHVLNLSNNHLQ 824
             L    +SL  LNL+ N   
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 56/245 (22%), Positives = 90/245 (36%), Gaps = 9/245 (3%)

Query: 225 TIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN-IFDGEIPSE-LNKLA 282
           ++P+ I    S   L L +N L          L  L  L+L  N +      S+      
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 283 QLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNK 342
            L+ LDLS N +  ++S     L+ LE L    +           L+  +L  L ++   
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 343 LSGEFPLELLRCSSLQQLDLSDNSFKGELPR-SLDKLEELTDLLLNNNSFTGSFPPEI-G 400
               F       SSL+ L ++ NSF+         +L  LT L L+         P    
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 196

Query: 401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN-CSGLTEIDFF 459
           +LS L+ L +  N            L +L  +    N +  S  +EL +  S L  ++  
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

Query: 460 GNHFS 464
            N F+
Sbjct: 257 QNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 51/236 (21%), Positives = 87/236 (36%), Gaps = 12/236 (5%)

Query: 549 LRIINFSHNKFSGSIYP--LTGSNSLTALDLTNN--SFSGPIPSELAMSRNLSRLRLAHN 604
              +    NK   S+          LT L L++N  SF G        + +L  L L+ N
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 605 HLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ--LSKCAKLAHLLLSNNELTGTIPFWL 662
            +   + S F  L +L  LD   ++   Q++          L +L +S+           
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 663 GSLQEIGELDLSSNNFNGTVPAEI-GNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLN 720
             L  +  L ++ N+F      +I      L  L L    L  ++ P    +L++L VLN
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 205

Query: 721 LQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS 776
           +  N+         +    L  L  S N    S   +L         L+L++N+F+
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.1 bits (224), Expect = 9e-20
 Identities = 45/233 (19%), Positives = 84/233 (36%), Gaps = 11/233 (4%)

Query: 428 TLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNH--FSGSIPETMGKLKNLVILQLRQN 485
           + + + L  N++           + LT++    N   F G   ++     +L  L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNNSFKGPLPPSLF 544
            +   + ++    ++L+ +    + L        F  L  L  + + +   +      +F
Sbjct: 89  GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIF 146

Query: 545 Q-LKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRL 601
             L  L ++  + N F  +  P   T   +LT LDL+        P+      +L  L +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 602 AHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQL--SKCAKLAHLLLSNN 652
           +HN+        +  L  L  LD S N        Q      + LA L L+ N
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 9e-19
 Identities = 55/262 (20%), Positives = 102/262 (38%), Gaps = 18/262 (6%)

Query: 332 SLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN-- 389
           S  ++      L+   P  +   SS  +L+L  N  +       DKL +LT L L++N  
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 390 SFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE--L 447
           SF G         + L+ L L  N +   +      L+ L  +    + +   +      
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122

Query: 448 TNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN-DLSGPIPASLGYCKRLQQIAL 506
            +   L  +D    H   +       L +L +L++  N      +P      + L  + L
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 507 ADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFS----G 561
           +  +L    P  F  LS L ++ + +N+F   L    ++ L  L+++++S N        
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 562 SIYPLTGSNSLTALDLTNNSFS 583
            +      +SL  L+LT N F+
Sbjct: 242 ELQHF--PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 40/181 (22%), Positives = 57/181 (31%), Gaps = 29/181 (16%)

Query: 71  LNLSSSGLSGSISRD-FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK 129
           L+   S L        FL+L +L  LD+S              L +L +L +  NSF   
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEI-GNLKHL 188
             P+I                          L  L  L ++ CQL   +      +L  L
Sbjct: 166 FLPDI-----------------------FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSL 201

Query: 189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIV--LLKSLQILNLANNSL 246
             L++  N    L          LQ    S N +  T     +     SL  LNL  N  
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

Query: 247 S 247
           +
Sbjct: 261 A 261

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  110 bits (276), Expect = 2e-26
 Identities = 74/334 (22%), Positives = 127/334 (38%), Gaps = 46/334 (13%)

Query: 235 SLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNL 294
            L+++  ++  L  ++P E+S   +   L+L  N        +   L  L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 295 SGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRC 354
           S                 + + AF+             LQ+L +++N L  E P  L   
Sbjct: 91  S----------------KIHEKAFSP---------LRKLQKLYISKNHLV-EIPPNLPS- 123

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT-GSFPPEIGNLSKLENLFLFDN 413
            SL +L + DN  +         L  +  + +  N      F P   +  KL  L + + 
Sbjct: 124 -SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 414 MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSGSIPETMG 472
            +T  IP ++   +TL+ ++L  N++  +I  E L   S L  +    N        ++ 
Sbjct: 183 KLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 473 KLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFR------FLSELY 526
            L  L  L L  N LS  +PA L   K LQ + L  N ++      F         +   
Sbjct: 239 FLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 527 LITLYNNSFK-GPLPPSLFQ-LKKLRIINFSHNK 558
            I+L+NN      + P+ F+ +     I F + K
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  105 bits (263), Expect = 1e-24
 Identities = 66/279 (23%), Positives = 102/279 (36%), Gaps = 23/279 (8%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
           S   T LDL NN  S     +    ++L  L L +N ++      F  L +L  L +S N
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF-NGTVPAEIG 687
               +I P L     L  L + +N +          L+ +  +++  N   N        
Sbjct: 113 HLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 688 NCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLS 746
           +  KL  L +    L+  IP        LN L+L  N +   I    + +  KLY L L 
Sbjct: 170 DGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225

Query: 747 ENFFTGSIPAD-LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPA 805
            N     I    L  L  L+  L L  N  S  +P  L  L  L+ + +  N +  +V  
Sbjct: 226 HNQIR-MIENGSLSFLPTLRE-LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

Query: 806 S-------LGKLTSLHVLNLSNNHLQGQL--PLTFSGFP 835
           +         K    + ++L NN +      P TF    
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (260), Expect = 3e-24
 Identities = 67/278 (24%), Positives = 103/278 (37%), Gaps = 18/278 (6%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
              L  +  ++      +P E+  S + + L L +N ++     +F  L  L  L L  N
Sbjct: 32  HCHLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88

Query: 629 SFTGQIAPQ-LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIG 687
             + +I  +  S   KL  L +S N L   IP        + EL +  N           
Sbjct: 89  KIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFS 144

Query: 688 NCSKLLKLSLRGNNL-SGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
               +  + + GN L +    P   +   LN L +    L+  IP  + +   L EL L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPE--TLNELHLD 201

Query: 747 ENFFTGSIPA-DLGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVP 804
            N    +I   DL R ++L   L L  N     I   SL  L  L  L++  N+L  +VP
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYR-LGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 805 ASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLGN 842
           A L  L  L V+ L  N++       F           
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.7 bits (249), Expect = 9e-23
 Identities = 69/331 (20%), Positives = 115/331 (34%), Gaps = 52/331 (15%)

Query: 54  CSWHGVTCSDDQ---------KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTG 104
           C    V CSD                L+L ++ +S     DF  L  L  L L +N ++ 
Sbjct: 33  CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 105 LIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTEL 164
           +       L+ L+ L +  N    +IPP +   + L  LRI DN            + ++
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDN-----------RIRKV 138

Query: 165 RELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGL-IPEAIHGCEELQKFAASNNMLE 223
            +   +              L+++  +++  N L             +L     S   L 
Sbjct: 139 PKGVFS-------------GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 224 GTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLGNIFDGEIPSELNKLA 282
             IP    L ++L  L+L +N +  +I +E L     L  L L  N         L+ L 
Sbjct: 186 -GIPKD--LPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 283 QLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIP------IKFCLNNSSLQQL 336
            L EL L  N LS  +      LK L+ + L  N  T  +       + F +  +    +
Sbjct: 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGI 299

Query: 337 ILARNKLS-GEFPLELLRC-SSLQQLDLSDN 365
            L  N +   E      RC +    +   + 
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.6 bits (228), Expect = 5e-20
 Identities = 62/310 (20%), Positives = 101/310 (32%), Gaps = 31/310 (10%)

Query: 419 IPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLV 478
           +P EI      + + L +N +S     +      L  +    N  S    +    L+ L 
Sbjct: 48  VPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 479 ILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK-G 537
            L + +N L   IP +L     L ++ + DN++       F  L  +  I +  N  +  
Sbjct: 106 KLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 538 PLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSE-LAMSRNL 596
              P  F   KL  +  S  K +G   P     +L  L L +N     I  E L     L
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTG--IPKDLPETLNELHLDHNKIQA-IELEDLLRYSKL 219

Query: 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG 656
            RL L HN +          L  L  L L  N  + ++   L     L  + L  N +T 
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT- 277

Query: 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLS-GKIPPEI-GNLT 714
                           +  N+F           +    +SL  N +   ++ P     +T
Sbjct: 278 ---------------KVGVNDFCPVGFGV--KRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 715 ALNVLNLQRN 724
               +     
Sbjct: 321 DRLAIQFGNY 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  112 bits (281), Expect = 9e-26
 Identities = 62/315 (19%), Positives = 110/315 (34%), Gaps = 52/315 (16%)

Query: 81  SISRDFLNLTSLETLDLSSNSLTGL---IPSELGQLQNLRILLLYSNSFSGKIPPEIGFL 137
           SI     N  SL + +   N+++G      S   + +   +     N     +  E   +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV-SLLKEC-LI 58

Query: 138 NKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNK 197
           N+   L++    L   +P ++    ++  L I    L  S+P    +L++L   D   N+
Sbjct: 59  NQFSELQLNRLNL-SSLPDNLP--PQITVLEITQNAL-ISLPELPASLEYL---DACDNR 111

Query: 198 LSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHL 257
           LS L PE     + L      NN L   +P        L+ +N  NN L+  +P   +  
Sbjct: 112 LSTL-PELPASLKHLD---VDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELPT-- 160

Query: 258 FNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNA 317
            +L  L++  N     +P        LE LD+S N L  S+  +  +  + E   +    
Sbjct: 161 -SLEVLSVRNNQL-TFLPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETEIF--- 211

Query: 318 FTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDK 377
                                  N+++   P  +L       + L DN     +  SL +
Sbjct: 212 ------------------FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 378 LEELTDLLLNNNSFT 392
                D       F+
Sbjct: 253 QTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  107 bits (269), Expect = 3e-24
 Identities = 62/338 (18%), Positives = 119/338 (35%), Gaps = 38/338 (11%)

Query: 158 IGNLTELRELAIAYCQLNG---SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQK 214
           I N   L + +  Y  ++G            +         N+   L+ E +    +  +
Sbjct: 7   INNNFSLSQNS-FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSE 63

Query: 215 FAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEI 274
              +   L  ++P ++     + +L +  N+L  S+P   +   +L YL+   N     +
Sbjct: 64  LQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TL 115

Query: 275 PSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQ 334
           P      A L+ LD+  N L+    +L      LE +   +N  T  +P       +SL+
Sbjct: 116 PELP---ASLKHLDVDNNQLT----MLPELPALLEYINADNNQLT-MLPELP----TSLE 163

Query: 335 QLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLL----LNNNS 390
            L +  N+L+   P       SL+ LD+S N  +  LP    +     +         N 
Sbjct: 164 VLSVRNNQLT-FLPELP---ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR 218

Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450
            T   P  I +L     + L DN ++ +I   + +       +      S S  ++ T  
Sbjct: 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

Query: 451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
                 D     F  +    + ++ +    +   N  S
Sbjct: 278 --RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS 313

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.7 bits (243), Expect = 4e-21
 Identities = 68/420 (16%), Positives = 130/420 (30%), Gaps = 67/420 (15%)

Query: 327 CLNNSSLQQLILARNKLSGEFPLELLRC-SSLQQLDLSDNSFKGELPRSLD--KLEELTD 383
             NN SL Q     N +S     +        ++  L   + + E    L    + + ++
Sbjct: 7   INNNFSLSQN-SFYNTIS-GTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLINQFSE 63

Query: 384 LLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSI 443
           L LN  + + S P  +    ++  L +  N +   +P     L+ L      DN++S ++
Sbjct: 64  LQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-TL 115

Query: 444 PRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQ 503
           P    +   L   D   N  +  +PE    L+    +    N L+  +P        L+ 
Sbjct: 116 PELPASLKHL---DVDNNQLT-MLPELPALLEY---INADNNQLTM-LPELPT---SLEV 164

Query: 504 IALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSI 563
           +++ +N+L+  +P     L  L    +  N  +  LP    +                  
Sbjct: 165 LSVRNNQLT-FLPELPESLEALD---VSTNLLES-LPAVPVRNHHSE------------- 206

Query: 564 YPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFL 623
                  +        N  +  IP  +        + L  N L+  I     + T     
Sbjct: 207 ------ETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 624 DLSFNSFTGQIAPQLSKCAKLAHLL---LSNNELTGTIPFWLGSLQEIGELDLS------ 674
                 F+     Q +    LA  +      N+ +     W     E      S      
Sbjct: 260 HGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRL 319

Query: 675 --SNNFNGT------VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSL 726
             + +   T      V A +   S   +L  +   ++        +  AL   NL++  L
Sbjct: 320 SDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.2 bits (239), Expect = 1e-20
 Identities = 64/374 (17%), Positives = 121/374 (32%), Gaps = 48/374 (12%)

Query: 466 SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525
                  K +   +    +N+    +   L    +  ++ L    LS S+P       ++
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQI 82

Query: 526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGP 585
            ++ +  N+    LP     L+ L       N+ S ++  L  S  L  LD+ NN  +  
Sbjct: 83  TVLEITQNALI-SLPELPASLEYLDA---CDNRLS-TLPELPAS--LKHLDVDNNQLTM- 134

Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
           +P   A    L  +   +N LT  +P     L  L    +  N  T  +         L 
Sbjct: 135 LPELPA---LLEYINADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPELPES---LE 183

Query: 646 HLLLSNNELTGTIPFWLGSLQ----EIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701
            L +S N L  ++P                    N     +P  I +      + L  N 
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 702 LSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRL 761
           LS +I   +   TA    +  R   S +        + L +      +F  +  +D+ ++
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD--AVTAWFPENKQSDVSQI 299

Query: 762 TELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN-----QLQGQVPASLGKLTSLHVL 816
                       +       +      L+RL+ + +       + QV A L KL++   L
Sbjct: 300 W-----------HAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348

Query: 817 NLSNNHLQGQLPLT 830
              +  +      +
Sbjct: 349 RQQSFAVAADATES 362

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.9 bits (215), Expect = 1e-17
 Identities = 43/205 (20%), Positives = 70/205 (34%), Gaps = 22/205 (10%)

Query: 89  LTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148
             SLE LD   N L+ L P     L++L    + +N  +  +P        L+ +   +N
Sbjct: 99  PASLEYLDACDNRLSTL-PELPASLKHLD---VDNNQLT-MLPELPA---LLEYINADNN 150

Query: 149 LLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHG 208
            L   +P    +L  L    +   QL   +P    +L+ L   D+  N L  L P     
Sbjct: 151 QL-TMLPELPTSLEVLS---VRNNQLT-FLPELPESLEAL---DVSTNLLESL-PAVPVR 201

Query: 209 CEELQKFAA----SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLN 264
               ++         N +   IP +I+ L     + L +N LS  I   LS        +
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 265 LLGNIFDGEIPSELNKLAQLEELDL 289
                F      +      L +   
Sbjct: 261 GPRIYFSMSDGQQNTLHRPLADAVT 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 1e-24
 Identities = 69/290 (23%), Positives = 103/290 (35%), Gaps = 40/290 (13%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
           SN  + +  T    S  +P  +    N   L L  N++       F  L  L  L L  N
Sbjct: 53  SNQFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 629 SFTGQIAPQ-LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI- 686
           S   QI     +  A L  L L +N LT         L ++ EL L +N    ++P+   
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAF 167

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRL 745
                L++L L        I       L  L  LNL   ++                   
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK------------------ 209

Query: 746 SENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVP 804
                   +P  L  L  L+  L++S N+F  EI P S   L  L++L +  +Q+     
Sbjct: 210 -------DMPN-LTPLVGLEE-LEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 805 ASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFL---GNAKLCGPPLL 851
            +   L SL  LNL++N+L       F+       L    N   C   +L
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (263), Expect = 6e-24
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 9/202 (4%)

Query: 71  LNLSSSGLSGSISRD-FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK 129
           L L  + +   I    F  L SL TL+L  N LT +       L  LR L L +N     
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-S 161

Query: 130 IPPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEIGNLKH 187
           IP      +  L  L +G+      I       L  L+ L +  C +   +P  +  L  
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVG 219

Query: 188 LTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
           L  L++  N    + P + HG   L+K    N+ +     ++   L SL  LNLA+N+LS
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

Query: 248 GSIPVE-LSHLFNLRYLNLLGN 268
            S+P +  + L  L  L+L  N
Sbjct: 280 -SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (251), Expect = 2e-22
 Identities = 60/258 (23%), Positives = 97/258 (37%), Gaps = 37/258 (14%)

Query: 67  HVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSF 126
           +   LNL  + +    +  F +L  LE L L  NS+  +       L +L  L L+ N  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 127 SGKIPPEIGF--LNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI- 182
           +  IP    F  L+KL+ L + +N +   IP +    +  L  L +   +    I     
Sbjct: 136 T-VIPSGA-FEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 183 GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLA 242
             L +L  L+L M  +            ++                    L  L+ L ++
Sbjct: 193 EGLFNLKYLNLGMCNIK-----------DMPNLTP---------------LVGLEELEMS 226

Query: 243 NNSLSGSIPVE-LSHLFNLRYLNLLGNIFDGEIPSE-LNKLAQLEELDLSKNNLSGSISL 300
            N     I       L +L+ L ++ +     I     + LA L EL+L+ NNLS     
Sbjct: 227 GNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 301 LNTQLKNLETLVLSDNAF 318
           L T L+ L  L L  N +
Sbjct: 285 LFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 57/255 (22%), Positives = 98/255 (38%), Gaps = 11/255 (4%)

Query: 429 LSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS 488
            S +      +S  +P+ +   S    ++   N+      +T   L +L +LQL +N + 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 489 GPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LK 547
                +      L  + L DN L+      F +LS+L  + L NN  +  +P   F  + 
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVP 171

Query: 548 KLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH 605
            L  ++    K    I      G  +L  L+L   +    +P+ L     L  L ++ NH
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNH 229

Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ-LSKCAKLAHLLLSNNELTGTIPFWLGS 664
                P  F  L+ L  L +  +  +  I        A L  L L++N L+         
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 665 LQEIGELDLSSNNFN 679
           L+ + EL L  N +N
Sbjct: 289 LRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 65/303 (21%), Positives = 99/303 (32%), Gaps = 57/303 (18%)

Query: 235 SLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNL 294
               +      LS  +P  +    N RYLNL+ N            L  LE L L +N++
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 295 SGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRC 354
                             +   AF G          +SL  L L  N L+   P      
Sbjct: 112 R----------------QIEVGAFNG---------LASLNTLELFDNWLT-VIPSGAFEY 145

Query: 355 -SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFD 412
            S L++L L +N  +     + +++  L  L L                L  L+ L L  
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 413 NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMG 472
             I                           +P  LT   GL E++  GNHF    P +  
Sbjct: 206 CNIK-------------------------DMP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 473 KLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYN 532
            L +L  L +  + +S     +      L ++ LA N LS      F  L  L  + L++
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 533 NSF 535
           N +
Sbjct: 300 NPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (263), Expect = 5e-24
 Identities = 66/271 (24%), Positives = 98/271 (36%), Gaps = 37/271 (13%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN 628
           SN  + +     +    +P  +  S N   L L  N +     + F  L  L  L LS N
Sbjct: 42  SNQFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 629 SFTGQIAPQ-LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI- 686
                I     +  A L  L L +N LT         L ++ EL L +N    ++P+   
Sbjct: 99  HIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRL 745
                L +L L        I       L+ L  LNL   +L                   
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------------------ 198

Query: 746 SENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVP 804
                   IP  L  L +L   LDLS N+ S  I P S   L+ L++L +  +Q+Q    
Sbjct: 199 -------EIPN-LTPLIKLDE-LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIER 248

Query: 805 ASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
            +   L SL  +NL++N+L       F+   
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (258), Expect = 2e-23
 Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L LS + +       F  L +L TL+L  N LT +       L  L+ L L +N     I
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SI 151

Query: 131 PPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEIGNLKHL 188
           P      +  L+ L +G+      I       L+ LR L +A C L   IP  +  L  L
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL 209

Query: 189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG 248
             LDL  N LS + P +  G   LQK     + ++    ++   L+SL  +NLA+N+L+ 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 249 SIPVE-LSHLFNLRYLNLLGN 268
            +P +  + L +L  ++L  N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (250), Expect = 2e-22
 Identities = 68/273 (24%), Positives = 103/273 (37%), Gaps = 38/273 (13%)

Query: 171 YCQLNG--SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPS 228
            C       +P  I    +   L+L  N++  +   +      L+    S N +      
Sbjct: 49  ICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106

Query: 229 SIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLGNIFDGEIPSEL-NKLAQLEE 286
           +   L +L  L L +N L+ +IP     +L  L+ L L  N  +  IPS   N++  L  
Sbjct: 107 AFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRR 164

Query: 287 LDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGE 346
           LDL +            +L  +     S+ AF G       L+N  L+ L LA   L  E
Sbjct: 165 LDLGELK----------RLSYI-----SEGAFEG-------LSN--LRYLNLAMCNLR-E 199

Query: 347 FPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE-IGNLSKL 405
            P  L     L +LDLS N      P S   L  L  L +  +            NL  L
Sbjct: 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSL 257

Query: 406 ENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDN 437
             + L  N +T  +P ++   L  L  I+L+ N
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 8e-22
 Identities = 63/253 (24%), Positives = 99/253 (39%), Gaps = 35/253 (13%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           LNL  + +       F +L  LE L LS N +  +       L NL  L L+ N  +  I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 131 PPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKH 187
           P     +L+KL+ L + +N +   IP +    +  LR L +   +    I       L +
Sbjct: 128 PNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186

Query: 188 LTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
           L  L+L M  L            E+                    L  L  L+L+ N LS
Sbjct: 187 LRYLNLAMCNLR-----------EIPNLTP---------------LIKLDELDLSGNHLS 220

Query: 248 GSIPVE-LSHLFNLRYLNLLGNIFDGEIPSE-LNKLAQLEELDLSKNNLSGSISLLNTQL 305
            +I       L +L+ L ++ +     I     + L  L E++L+ NNL+     L T L
Sbjct: 221 -AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 306 KNLETLVLSDNAF 318
            +LE + L  N +
Sbjct: 279 HHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 4e-21
 Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 8/211 (3%)

Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
           +L+HL  L L  N +  +   A +G   L      +N L      + V L  L+ L L N
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 244 NSLSGSIPVEL-SHLFNLRYLNLLGNIFDGEIPSE-LNKLAQLEELDLSKNNLSGSISLL 301
           N +  SIP    + + +LR L+L        I       L+ L  L+L+  NL    +L 
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT 204

Query: 302 NTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRC-SSLQQL 360
              L  L+ L LS N  + +I          LQ+L + ++++             SL ++
Sbjct: 205 P--LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEI 260

Query: 361 DLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
           +L+ N+           L  L  + L++N +
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.2 bits (224), Expect = 5e-19
 Identities = 55/263 (20%), Positives = 100/263 (38%), Gaps = 30/263 (11%)

Query: 442 SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL 501
            +P  ++  +    ++   N        +   L++L ILQL +N +      +      L
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFS 560
             + L DN+L+      F +LS+L  + L NN  +  +P   F  +  LR ++       
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGEL--- 170

Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620
                      L+ +     +F G          NL  L LA  +L   IP+    L +L
Sbjct: 171 ---------KRLSYIS--EGAFEG--------LSNLRYLNLAMCNLR-EIPN-LTPLIKL 209

Query: 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
           + LDLS N  +            L  L +  +++         +LQ + E++L+ NN   
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 681 TVPAEI-GNCSKLLKLSLRGNNL 702
            +P ++      L ++ L  N  
Sbjct: 269 LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.3 bits (206), Expect = 9e-17
 Identities = 60/303 (19%), Positives = 99/303 (32%), Gaps = 56/303 (18%)

Query: 353 RCSS-LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLF 411
            CS+   ++     + + E+P  +        L L+ N           +L  LE L L 
Sbjct: 40  SCSNQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 412 DNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPET 470
            N I   I +     L  L+ + L+DN+++ +IP                  F       
Sbjct: 97  RNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGA---------------FVY----- 134

Query: 471 MGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL 530
              L  L  L LR N +   IP+                         F  +  L  + L
Sbjct: 135 ---LSKLKELWLRNNPIES-IPSY-----------------------AFNRIPSLRRLDL 167

Query: 531 YNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSE 589
                   +    F+ L  LR +N +       I  LT    L  LDL+ N  S   P  
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGS 226

Query: 590 LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLL 649
                +L +L +  + +     + F  L  L  ++L+ N+ T       +    L  + L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 650 SNN 652
            +N
Sbjct: 287 HHN 289

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  105 bits (264), Expect = 1e-23
 Identities = 51/248 (20%), Positives = 94/248 (37%), Gaps = 18/248 (7%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
                   +L   S+T  +     +L ++  ++  ++     +   I +L  +  L +  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
           N L  +I P + NL  L  L +   ++   +   + +LK L SL L+ N +S +    + 
Sbjct: 75  NKL-TDIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDI--NGLV 128

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
              +L+     NN +  T  + +  L  L  L+L +N +S  I   L+ L  L+ L L  
Sbjct: 129 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 184

Query: 268 N-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKF 326
           N I D      L  L  L+ L+L             + L    T+  +D +      I  
Sbjct: 185 NHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 327 CLNNSSLQ 334
             +     
Sbjct: 242 DGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 1e-21
 Identities = 54/277 (19%), Positives = 100/277 (36%), Gaps = 25/277 (9%)

Query: 188 LTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
           +         +  + P+      E  K       +   +  +   L S+  +   N+ + 
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 248 GSIPVELSHLFNLRYLNLLGNIFDGEIP--SELNKLAQLEELDLSKNNLSGSISLLNTQL 305
            S+   + +L N+  L L GN    ++     L  L  L  L L +N +   +S L   L
Sbjct: 57  -SVQ-GIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSSLK-DL 108

Query: 306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365
           K L++L L  N  +    +    +   L+ L L  NK++    L  L  + L  L L DN
Sbjct: 109 KKLKSLSLEHNGISDINGLV---HLPQLESLYLGNNKITDITVLSRL--TKLDTLSLEDN 163

Query: 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK 425
               ++   L  L +L +L L+ N  +      +  L  L+ L LF      K       
Sbjct: 164 QIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNH 462
           L   + +   D  +    P  +++     + +   + 
Sbjct: 220 LVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 93.6 bits (232), Expect = 8e-20
 Identities = 43/229 (18%), Positives = 99/229 (43%), Gaps = 16/229 (6%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
              +  NL    ++ +++++   L S++ +  +++ +  +    +  L N+  L L  N 
Sbjct: 21  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK 76

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            +  I P +  L  L  L + +N +  ++   + +L +L+ L++ +  ++  I   + +L
Sbjct: 77  LT-DIKP-LTNLKNLGWLFLDENKI-KDLSS-LKDLKKLKSLSLEHNGIS-DING-LVHL 130

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
             L SL L  NK++ +    +    +L   +  +N +  +    +  L  LQ L L+ N 
Sbjct: 131 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNH 186

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNL 294
           +S  +   L+ L NL  L L       +  +  + L     +  +  +L
Sbjct: 187 IS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.5 bits (229), Expect = 2e-19
 Identities = 71/356 (19%), Positives = 138/356 (38%), Gaps = 20/356 (5%)

Query: 276 SELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQ 335
              +  A+  + +L K +++ +++    +L +++ ++ +++       I++  N   + +
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYLPN---VTK 69

Query: 336 LILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSF 395
           L L  NKL+   PL  L   +L  L L +N  K +L  SL  L++L  L L +N  +   
Sbjct: 70  LFLNGNKLTDIKPLTNL--KNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DI 124

Query: 396 PPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTE 455
              + +L +LE+L+L +N IT  I V + +L  L  + L DNQ+S  I   L   + L  
Sbjct: 125 NG-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 179

Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
           +    NH S  +   +  LKNL +L+L   +                 +   D  L    
Sbjct: 180 LYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237

Query: 516 PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTAL 575
            ++     E   +  +   F   +    F   +   I  +  +F G +          + 
Sbjct: 238 IISDDGDYEKPNVKWHLPEFTNEVS---FIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT 631
           D+        + +   ++      +  +           G     N   +S N FT
Sbjct: 295 DVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFT 350

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.1 bits (228), Expect = 3e-19
 Identities = 52/253 (20%), Positives = 95/253 (37%), Gaps = 19/253 (7%)

Query: 572 LTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT 631
           +      +       P          +  L    +T  +     +L  ++ +  + +   
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 632 GQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSK 691
             +   +     +  L L+ N+LT   P  L +L+ +G L L  N         + +  K
Sbjct: 57  -SVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKK 110

Query: 692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751
           L  LSL  N +S  I   + +L  L  L L  N ++    + + +  KL  L L +N  +
Sbjct: 111 LKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166

Query: 752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT 811
             I   L  LT+LQ  L LSKN+ S ++   L  L  L+ L +   +   +       L 
Sbjct: 167 -DIV-PLAGLTKLQN-LYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 812 SLHVLNLSNNHLQ 824
             + +  ++  L 
Sbjct: 222 VPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 7e-16
 Identities = 55/290 (18%), Positives = 102/290 (35%), Gaps = 42/290 (14%)

Query: 333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT 392
           + + I     +   FP +    +   + +L   S    +    ++L  +  ++ NN+   
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 393 GSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG 452
            S    I  L  +  LFL  N +T  I   +  L+ L  ++L +N++   +   L +   
Sbjct: 57  -SVQG-IQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DLS-SLKDLKK 110

Query: 453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLS 512
           L  +    N  S  I   +  L  L  L L  N ++      L    +L  ++L DN++S
Sbjct: 111 LKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 166

Query: 513 GSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL 572
             VPL                            L KL+ +  S N  S  +  L G  +L
Sbjct: 167 DIVPLA--------------------------GLTKLQNLYLSKNHIS-DLRALAGLKNL 199

Query: 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP-SEFGKLTELN 621
             L+L +        +  +     + ++     L      S+ G   + N
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (251), Expect = 2e-23
 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 7/205 (3%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           + L  + +S   +  F    +L  L L SN L  +  +    L  L  L L  N+    +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 131 PPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKH 187
            P     L +L  L +    L  E+ P +   L  L+ L +    L  ++P +   +L +
Sbjct: 97  DPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGN 154

Query: 188 LTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS 247
           LT L L  N++S +   A  G   L +     N +    P +   L  L  L L  N+LS
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 248 GSIPVE-LSHLFNLRYLNLLGNIFD 271
            ++P E L+ L  L+YL L  N + 
Sbjct: 215 -ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 51/242 (21%), Positives = 86/242 (35%), Gaps = 32/242 (13%)

Query: 153 EIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEEL 212
            +P  I      + + +   +++          ++LT L L  N L+ +   A  G   L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 213 QKFAASNNMLEGTIPSSI-VLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLGNIF 270
           ++   S+N    ++  +    L  L  L+L    L   +       L  L+YL L  N  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 271 DGEIPSE-LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLN 329
              +P +    L  L  L L  N +S                 + + AF G         
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRIS----------------SVPERAFRG--------- 175

Query: 330 NSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN 389
             SL +L+L +N+++   P        L  L L  N+       +L  L  L  L LN+N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 390 SF 391
            +
Sbjct: 236 PW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 4e-18
 Identities = 55/241 (22%), Positives = 79/241 (32%), Gaps = 33/241 (13%)

Query: 603 HNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWL 662
              L   +P           + L  N  +   A     C  L  L L +N L        
Sbjct: 20  QQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 663 GSLQEIGELDLSSNNFNGTVPAEI-GNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLN 720
             L  + +LDLS N    +V         +L  L L    L  ++ P +   L AL  L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

Query: 721 LQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIP 780
           LQ N+L                  L ++ F       LG LT L     L  N  S  +P
Sbjct: 136 LQDNALQ----------------ALPDDTFRD-----LGNLTHL----FLHGNRIS-SVP 169

Query: 781 P-SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSF 839
             +   L  L+RL +  N++    P +   L  L  L L  N+L        +      +
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 840 L 840
           L
Sbjct: 230 L 230

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 7/209 (3%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
           ++ Q++ L  N++S         C +L  L L  N        +   L  L  L L++N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 391 FTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRE-L 447
              S  P     L +L  L L    +  ++   +   L  L  +YL DN +  ++P +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 448 TNCSGLTEIDFFGNHFSGSIPETM-GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIAL 506
            +   LT +   GN  S S+PE     L +L  L L QN ++   P +     RL  + L
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 507 ADNKLSGSVPLTFRFLSELYLITLYNNSF 535
             N LS         L  L  + L +N +
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 6/208 (2%)

Query: 476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
               + L  N +S    AS   C+ L  + L  N L+      F  L+ L  + L +N+ 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 536 KGPLPPSLFQ-LKKLRIINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSE-LA 591
              + P+ F  L +L  ++         + P    G  +L  L L +N+    +P +   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN 651
              NL+ L L  N ++      F  L  L+ L L  N              +L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 652 NELTGTIPFWLGSLQEIGELDLSSNNFN 679
           N L+      L  L+ +  L L+ N + 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWV 238

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  100 bits (251), Expect = 6e-23
 Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 15/258 (5%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+LS++ ++   + D     +L+ L L+SN +  +       L +L  L L  N  S  +
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NL 115

Query: 131 PPEI-GFLNKLQVLRIGDNLLWGEIPPHI--GNLTELRELAIAYCQLNGSIPVEI-GNLK 186
                  L+ L  L +  N     +       +LT+L+ L +        I  +    L 
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL 246
            L  L++  + L    P+++   + +             +   + +  S++ L L +  L
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 247 SGSIPVELS--------HLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
                 ELS          F  R + +       ++   LN+++ L EL+ S+N L    
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVP 293

Query: 299 SLLNTQLKNLETLVLSDN 316
             +  +L +L+ + L  N
Sbjct: 294 DGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 57/272 (20%), Positives = 98/272 (36%), Gaps = 19/272 (6%)

Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA 635
             ++ S +  IPS L  +  +  L L++N +T    S+  +   L  L L+ N     I 
Sbjct: 37  KGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 636 PQL-SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-GNCSKLL 693
               S    L HL LS N L+     W   L  +  L+L  N +       +  + +KL 
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 694 KLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752
            L +   +   KI  +    LT L  L +  + L    P +++  + +  L L       
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI- 211

Query: 753 SIPADL-GRLTELQVILDLSKNNFSG----EIPP----SLGSLLKLERLNISYNQLQGQV 803
            +        + ++  L+L   +       E+      SL        + I+   L  QV
Sbjct: 212 LLLEIFVDVTSSVEC-LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QV 269

Query: 804 PASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
              L +++ L  L  S N L+      F    
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.8 bits (236), Expect = 6e-21
 Identities = 49/267 (18%), Positives = 96/267 (35%), Gaps = 18/267 (6%)

Query: 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNS 629
           ++ +LDL+NN  +    S+L    NL  L L  N +   I  + F  L  L  LDLS+N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 630 FTGQIAPQL-SKCAKLAHLLLSNNELTGTIPF-WLGSLQEIGELDLSSNNFNGTVPAEI- 686
            +  ++       + L  L L  N             L ++  L + + +    +  +  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRL 745
              + L +L +  ++L     P+   ++  ++ L L        +   +     +  L L
Sbjct: 171 AGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 746 SENFFTG----SIPAD----LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN 797
            +          +       L +    +  + ++  +   ++   L  +  L  L  S N
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFR-NVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 798 QLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           QL+        +LTSL  + L  N   
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.4 bits (235), Expect = 7e-21
 Identities = 63/328 (19%), Positives = 116/328 (35%), Gaps = 72/328 (21%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNL 149
            ++++LDLS+N +T +  S+L +  NL+ L+L SN  +                      
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN---------------------- 89

Query: 150 LWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIH 207
               I      +L  L  L ++Y  L  ++       L  LT L+L  N    L   ++ 
Sbjct: 90  ---TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLL 266
                                    L  LQIL + N      I  +  + L  L  L + 
Sbjct: 146 S-----------------------HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 267 GNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKF 326
            +      P  L  +  +  L L        + +      ++E L L D           
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD--------- 233

Query: 327 CLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLL 386
            L+     +L       +GE    L++  + + + ++D S   ++ + L+++  L +L  
Sbjct: 234 -LDTFHFSEL------STGETNS-LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEF 284

Query: 387 NNNSFTGSFPPEI-GNLSKLENLFLFDN 413
           + N    S P  I   L+ L+ ++L  N
Sbjct: 285 SRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 4e-20
 Identities = 54/299 (18%), Positives = 104/299 (34%), Gaps = 42/299 (14%)

Query: 177 SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSL 236
           SIP  +   + + SLDL  N+++ +    +                            +L
Sbjct: 45  SIPSGL--TEAVKSLDLSNNRITYISNSDLQR------------------------CVNL 78

Query: 237 QILNLANNSLSGSIPVEL-SHLFNLRYLNLLGNIFDGEIPSEL-NKLAQLEELDLSKNNL 294
           Q L L +N ++ +I  +  S L +L +L+L  N     + S     L+ L  L+L  N  
Sbjct: 79  QALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 295 SG-SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLR 353
                + L + L  L+ L + +      I  K     + L++L +  + L    P  L  
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 354 CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI--------GNLSKL 405
             ++  L L        L   +D    +  L L +         E+              
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 406 ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHF 463
            N+ + D  +  ++   + ++  L  +    NQ+  S+P       + L +I    N +
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 47/280 (16%), Positives = 92/280 (32%), Gaps = 20/280 (7%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
            +++ L L+ N+++     +L RC +LQ L L+ N        S   L  L  L L+ N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 391 FTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRE-L 447
            + +        LS L  L L  N         +   L  L  + + +      I R+  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 448 TNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALA 507
              + L E++   +      P+++  ++N+  L L                       L 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI----------------LLL 214

Query: 508 DNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLT 567
           +  +  +  +    L +  L T + +        SL +    R +  +       +  L 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 568 GSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLT 607
             + L  L+ + N              +L ++ L  N   
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 41/238 (17%)

Query: 71  LNLSSSGLSGSISRD-FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK 129
           L L+S+G++ +I  D F +L SLE LDLS N L+ L  S    L +L  L L  N +   
Sbjct: 81  LVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-T 138

Query: 130 IPPEIGF--LNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNL 185
           +     F  L KLQ+LR+G+   + +I       LT L EL I    L  S   +   ++
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSI 197

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEG--------------------- 224
           ++++ L L M +   L+   +     ++     +  L+                      
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 225 ----------TIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLGNIFD 271
                      +   +  +  L  L  + N L  S+P      L +L+ + L  N +D
Sbjct: 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 57/278 (20%), Positives = 96/278 (34%), Gaps = 38/278 (13%)

Query: 587 PSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAH 646
            + L+  RN    + +   L  +IPS  G    +  LDLS N  T      L +C  L  
Sbjct: 25  QASLSCDRNGI-CKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQA 80

Query: 647 LLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
           L+L++N +                  +  ++F+            L  L L  N LS  +
Sbjct: 81  LVLTSNGIN----------------TIEEDSFSSL--------GSLEHLDLSYNYLS-NL 115

Query: 707 PPEI-GNLTALNVLNLQRNSLSGNIPSTI-QQCKKLYELRLSENFFTGSIPAD-LGRLTE 763
                  L++L  LNL  N       +++     KL  LR+        I       LT 
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 764 LQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHL 823
           L+  L++  ++     P SL S+  +  L +   Q    +   +   +S+  L L +  L
Sbjct: 176 LEE-LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 824 QG----QLP-LTFSGFPLSSFLGNAKLCGPPLLSCSEL 856
                 +L     +         N K+    L    +L
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 67/323 (20%), Positives = 108/323 (33%), Gaps = 35/323 (10%)

Query: 84  RDFLNLTSLETLDLSSNSLTGLIPSEL-GQLQNLRILLLYSN-SFSGKIPPEIGFLNKLQ 141
               N +  +    S+ +  G    EL G  ++L  LL   +         +I     L+
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLK 71

Query: 142 VLRIGDNLLWGEIPPH---IGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKL 198
            L +    +   I      +  ++ L+EL +   ++ G+ P  +          L +  +
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 199 SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLF 258
           S    +A                          L   L++L++A          ++    
Sbjct: 132 SWATRDAWLA------------------ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 259 NLRYLNLLGNIFDGEIPSE----LNKLAQLEELDLSKNN---LSGSISLLNTQLKNLETL 311
            L  L+L  N   GE          K   L+ L L        SG  S L      L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 312 VLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGEL 371
            LS N+   +     C   S L  L L+   L  + P  L   + L  LDLS N      
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RN 289

Query: 372 PRSLDKLEELTDLLLNNNSFTGS 394
           P S D+L ++ +L L  N F  S
Sbjct: 290 P-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 58/258 (22%), Positives = 88/258 (34%), Gaps = 31/258 (12%)

Query: 72  NLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIP 131
                      +   L ++ L+ L L +  +TG  P  L +     + +L   + S    
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS--WA 134

Query: 132 PEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSL 191
               +L +LQ                      L+ L+IA          ++     L++L
Sbjct: 135 TRDAWLAELQQWL----------------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 192 DLQMNKLSGLIPEAIHGCEE----LQKFAASNNMLE---GTIPSSIVLLKSLQILNLANN 244
           DL  N   G        C      LQ  A  N  +E   G   +       LQ L+L++N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 245 SLSGSIPVEL-SHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
           SL  +           L  LNL       ++P  L   A+L  LDLS N L  + S    
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRNPSPD-- 293

Query: 304 QLKNLETLVLSDNAFTGS 321
           +L  +  L L  N F  S
Sbjct: 294 ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 93.8 bits (233), Expect = 7e-21
 Identities = 51/264 (19%), Positives = 81/264 (30%), Gaps = 31/264 (11%)

Query: 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLR---LAHNHLTGNIPSEFGKLTELNFLDLSF 627
           SL  L +        I         +S L+   L +  +TG  P    + T  +   L+ 
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 628 NSFTGQIAPQLS------KCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
            + +                  L  L ++           +     +  LDLS N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY 741
                  C                 P +   L  L + N    + SG   +      +L 
Sbjct: 189 RGLISALC-----------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 742 ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG 801
            L LS N    +  A           L+LS      ++P  L +  KL  L++SYN+L  
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDR 288

Query: 802 QVPASLGKLTSLHVLNLSNNHLQG 825
             P S  +L  +  L+L  N    
Sbjct: 289 -NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 9e-19
 Identities = 51/244 (20%), Positives = 87/244 (35%), Gaps = 23/244 (9%)

Query: 528 ITLYNNSFKGPLPPSLFQL---KKLRIINFSHNKFSGSIYPLTGS---NSLTALDLTNNS 581
           +T+        +     ++     L+ +   + + +G+  P         L  L+L N S
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 582 FSGPIPSELAMSR----NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ 637
           ++        + +     L  L +A  H       +      L+ LDLS N   G+    
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 638 LSKC----AKLAHLLLSNNELT---GTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-GNC 689
            + C      L  L L N  +    G       +  ++  LDLS N+      A      
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENF 749
           S+L  L+L    L  ++P  +     L+VL+L  N L    PS   +  ++  L L  N 
Sbjct: 253 SQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNP 307

Query: 750 FTGS 753
           F  S
Sbjct: 308 FLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 1e-18
 Identities = 58/322 (18%), Positives = 100/322 (31%), Gaps = 50/322 (15%)

Query: 319 TGSIPIKFCLNNSSLQQLILARNKLSGEFP-LELLRCSSLQQLDLSDNSFKGELPRSLDK 377
            G+  ++      SL+ L+   +  +      ++++  SL++L +        +     +
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 378 LEE---LTDLLLNNNSFTGSFPPEIGNLS--KLENLFLFDNMITGKIPVEIGKLQTLSAI 432
           +     L +L L N   TG+ PP +   +   L  L L +          + +LQ     
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLK- 148

Query: 433 YLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIP 492
                              GL  +     H      E +     L  L L  N   G   
Sbjct: 149 ------------------PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 493 ASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRII 552
                C                 PL F  L  L L      +  G          +L+ +
Sbjct: 191 LISALC-----------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 553 NFSHNKFSGSIYPLTGSN--SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNI 610
           + SHN    +    +      L +L+L+       +P  L     LS L L++N L  N 
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLDRN- 289

Query: 611 PSEFGKLTELNFLDLSFNSFTG 632
                +L ++  L L  N F  
Sbjct: 290 -PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 56/279 (20%), Positives = 91/279 (32%), Gaps = 22/279 (7%)

Query: 301 LNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFP---LELLRCSSL 357
           L    ++LE L+   +           + + SL++L +   ++        L +L  S L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 358 QQLDLSDNSFKGELPRSLDKL--EELTDLLLNNNSFTG--SFPPEIGNLSK--LENLFLF 411
           Q+L L +    G  P  L +    +L  L L N S+    ++  E+    K  L+ L + 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 412 DNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG----LTEIDFFGNHF---S 464
                     ++     LS + L DN   G        C      L  +          S
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 465 GSIPETMGKLKNLVILQLRQNDLSG-PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLS 523
           G           L  L L  N L       S  +  +L  + L+   L          LS
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277

Query: 524 ELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGS 562
            L L     N       PS  +L ++  ++   N F  S
Sbjct: 278 VLDL---SYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 20/210 (9%)

Query: 644 LAHLLLSNNELTGTIPF--WLGSLQEIGELDLSSNNFNGTVPA---EIGNCSKLLKLSLR 698
           L +LL   +       F   + SL  +  L + +      +      +   S L +L+L 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 699 GNNLSGKIPPEIGNLT--ALNVLNLQRNSLSG--NIPSTIQQCKK--LYELRLSENFFTG 752
              ++G  PP +   T   LN+LNL+  S +      + +QQ  K  L  L +++     
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 753 SIPADLGRLTELQVILDLSKNNFSGEIPPS----LGSLLKLERLNISYNQLQ---GQVPA 805
                +     L   LDLS N   GE              L+ L +    ++   G   A
Sbjct: 164 FSCEQVRVFPALST-LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 806 SLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
                  L  L+LS+N L+         +P
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 8/157 (5%)

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQ---CKKLYEL 743
           G  S    L             +I    +L  L ++   +   I     +      L EL
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 744 RLSENFFTGSIPADLGRLTELQV-ILDLSKNNFSGE--IPPSLGSLLK--LERLNISYNQ 798
            L     TG+ P  L   T   + IL+L   +++        L   LK  L+ L+I+   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 799 LQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
                   +    +L  L+LS+N   G+  L  +  P
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQ-LQNLRILLLYSNSFSGK 129
            N      SG  S        L+ LDLS NSL     +        L  L L       +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 130 IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQL 174
           +P  +    KL VL +  N L  +  P    L ++  L++     
Sbjct: 268 VPKGL--PAKLSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPF 308

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 19/255 (7%)

Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
            L +   +    + ++  +       + +   +A    +  T    +  L +L  L L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKD 72

Query: 244 NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNT 303
           N ++  +   L +L  +  L L GN    +  S +  L  ++ LDL+   ++    L   
Sbjct: 73  NQIT-DLA-PLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLAG- 127

Query: 304 QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLS 363
            L NL+ L L  N  T   P+      ++LQ L +   ++S   PL  L  S L  L   
Sbjct: 128 -LSNLQVLYLDLNQITNISPLA---GLTNLQYLSIGNAQVSDLTPLANL--SKLTTLKAD 181

Query: 364 DNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEI 423
           DN      P  L  L  L ++ L NN  +      + N S L  + L +  IT +     
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYN 237

Query: 424 GKLQTLSAIYLYDNQ 438
             L   + +      
Sbjct: 238 NNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 21/282 (7%)

Query: 137 LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMN 196
           L     +  G + +   +     +L  +  L+     +  +I   +  L +L  L+L+ N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDN 73

Query: 197 KLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSH 256
           +++ L P  +    ++ +   S N L     S+I  L+S++ L+L +  ++   P  L+ 
Sbjct: 74  QITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 257 LFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316
           L NL+ L L  N       S L  L  L+ L +    +S  ++ L   L  L TL   DN
Sbjct: 128 LSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVS-DLTPLA-NLSKLTTLKADDN 183

Query: 317 AFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLD 376
             +   P+    +  +L ++ L  N++S   PL     S+L  + L++ +   +     +
Sbjct: 184 KISDISPLA---SLPNLIEVHLKNNQISDVSPLANT--SNLFIVTLTNQTITNQPVFYNN 238

Query: 377 KLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGK 418
            L      ++   S     P  I +     +  L  N+ +  
Sbjct: 239 NLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 91.7 bits (228), Expect = 3e-20
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 21/250 (8%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
            L +   +    +++T  +      L  +  L  +    +  I   + +LN L  L + D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
           N +  ++ P + NLT++ EL ++   L  ++   I  L+ + +LDL   +++ + P  + 
Sbjct: 73  NQI-TDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
           G   LQ      N +     S +  L +LQ L++ N  +S   P  L++L  L  L    
Sbjct: 127 GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 268 N-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKF 326
           N I D    S L  L  L E+ L  N +S    L N    NL  + L++   T + P+ +
Sbjct: 183 NKISD---ISPLASLPNLIEVHLKNNQISDVSPLAN--TSNLFIVTLTNQTIT-NQPVFY 236

Query: 327 CLNNSSLQQL 336
             N      +
Sbjct: 237 NNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 5e-20
 Identities = 58/269 (21%), Positives = 98/269 (36%), Gaps = 19/269 (7%)

Query: 553 NFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPS 612
           + +       I+P     +   +    ++ +  +    A    ++ L      +T  I  
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-E 57

Query: 613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672
               L  L  L+L  N  T  +AP L    K+  L LS N L       +  LQ I  LD
Sbjct: 58  GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLD 113

Query: 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS 732
           L+S       P  +   S L  L L  N ++  I P +  LT L  L++    +S ++ +
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DL-T 167

Query: 733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
            +    KL  L+  +N  +  I   L  L  L   + L  N  S   P  L +   L  +
Sbjct: 168 PLANLSKLTTLKADDNKIS-DISP-LASLPNLI-EVHLKNNQISDVSP--LANTSNLFIV 222

Query: 793 NISYNQLQGQVPASLGKLTSLHVLNLSNN 821
            ++   +  Q       L   +V+   + 
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 19/259 (7%)

Query: 276 SELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQ 335
                LA   ++   K+N++ +++     L  + TL       T    +++  N   L  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEGVQYLNN---LIG 67

Query: 336 LILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSF 395
           L L  N+++   PL+ L  + + +L+LS N  K     ++  L+ +  L L +   T   
Sbjct: 68  LELKDNQITDLAPLKNL--TKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVT 123

Query: 396 PPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTE 455
           P  +  LS L+ L+L  N IT   P  +  L  L  + + + Q+S   P  L N S LT 
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177

Query: 456 IDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV 515
           +    N  S  I   +  L NL+ + L+ N +S   P  L     L  + L +  ++   
Sbjct: 178 LKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 516 PLTFRFLSELYLITLYNNS 534
                 L    ++   + +
Sbjct: 234 VFYNNNLVVPNVVKGPSGA 252

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 19/248 (7%)

Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
           N  ++    +++T         L  +  L       T  I   +     L  L L +N++
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI 75

Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT 714
           T   P  L +L +I EL+LS N       + I     +  L L    ++   P  +  L+
Sbjct: 76  TDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNN 774
            L VL L  N ++ NI   +     L  L +     +   P  L  L++L   L    N 
Sbjct: 130 NLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT-TLKADDNK 184

Query: 775 FSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGF 834
            S +I P L SL  L  +++  NQ+    P  L   ++L ++ L+N  +  Q     +  
Sbjct: 185 IS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 835 PLSSFLGN 842
            + + +  
Sbjct: 241 VVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 46/237 (19%), Positives = 91/237 (38%), Gaps = 16/237 (6%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
             +  L+   +G++ +I      L +L  L+L  N +T L  + L  L  +  L L  N 
Sbjct: 41  DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNP 96

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
               +   I  L  ++ L +    +  ++ P +  L+ L+ L +   Q+    P  +  L
Sbjct: 97  LK-NVSA-IAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITNISP--LAGL 150

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
            +L  L +   ++S L    +    +L    A +N +     S +  L +L  ++L NN 
Sbjct: 151 TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQ 206

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
           +S   P  L++  NL  + L       +     N L     +           ++ +
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 21/297 (7%)

Query: 385 LLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIP 444
           +    +    FP     L+    +    + +T    V    L  ++ +  +   ++ +I 
Sbjct: 3   ITQPTAINVIFP--DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE 57

Query: 445 RELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQI 504
             +   + L  ++   N  +  +   +  L  +  L+L  N L       +   + ++ +
Sbjct: 58  -GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112

Query: 505 ALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY 564
            L   +++   PL    LS L ++ L  N         L  L  L+ ++  + + S  + 
Sbjct: 113 DLTSTQITDVTPLAG--LSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS-DLT 167

Query: 565 PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
           PL   + LT L   +N  S    S LA   NL  + L +N ++    S     + L  + 
Sbjct: 168 PLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVT 223

Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
           L+  + T Q     +    +   ++         P  +         +L+ N  +  
Sbjct: 224 LTNQTITNQPVFYNNN--LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 18/231 (7%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
            +++GL L  + ++  ++    NLT +  L+LS N L  +  S +  LQ+++ L L S  
Sbjct: 63  NNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQ 118

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            +   P  +  L+ LQVL +  N +   I P +  LT L+ L+I   Q++   P  + NL
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP--LANL 172

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
             LT+L    NK+S +    +     L +    NN +  +  S +    +L I+ L N +
Sbjct: 173 SKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQT 228

Query: 246 LSGSIPVELSHLFNLRYLNLLGNIFDGEI-PSELNKLAQLEELDLSKNNLS 295
           ++       +   NL   N++       I P+ ++        +L+ N  S
Sbjct: 229 ITNQPVFYNN---NLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.0 bits (224), Expect = 1e-20
 Identities = 34/185 (18%), Positives = 70/185 (37%), Gaps = 8/185 (4%)

Query: 162 TELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNM 221
           +  +         + +  +    +  LT + L    ++ L    I     ++    +N  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 222 LEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKL 281
              T  + I  L +L+ L +    ++      LS L +L  L++  +  D  I +++N L
Sbjct: 78  A--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 282 AQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN 341
            ++  +DLS N     I  L   L  L++L +  +       I+   +   L QL     
Sbjct: 136 PKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAFSQ 191

Query: 342 KLSGE 346
            + G+
Sbjct: 192 TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.9 bits (203), Expect = 7e-18
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 8/184 (4%)

Query: 642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701
           +     L      + T       +  +  + L++ N        I     +  L++   +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 702 LSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRL 761
            +    P I  L+ L  L +    ++ +    +     L  L +S +    SI   +  L
Sbjct: 78  AT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 762 TELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
            ++   +DLS N    +I P L +L +L+ LNI ++ +       +     L+ L   + 
Sbjct: 136 PKVNS-IDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

Query: 822 HLQG 825
            + G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 30/185 (16%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
                   L +++ +   ++   Q+ +L  + L++   T    I++  N   ++ L +  
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIEYAHN---IKDLTINN 75

Query: 341 NKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG 400
              +   P+  L  S+L++L +       +   +L  L  LT L +++++   S   +I 
Sbjct: 76  IHATNYNPISGL--SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFG 460
            L K+ ++ L  N     I   +  L  L ++ +  + +       + +   L ++  F 
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 461 NHFSG 465
               G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 7e-16
 Identities = 35/186 (18%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSK 291
            K+     L  +S +    +  + + +L Y+ L    + D    + +     +++L ++ 
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD---LTGIEYAHNIKDLTINN 75

Query: 292 NNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLEL 351
            + + + + + + L NLE L +     T S  I      +SL  L ++ +        ++
Sbjct: 76  IHAT-NYNPI-SGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 352 LRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLF 411
                +  +DLS N    ++   L  L EL  L +  +         I +  KL  L+ F
Sbjct: 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 412 DNMITG 417
              I G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 7e-16
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 10/181 (5%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
              +     L  +S   +  +++  L  +    L + + +  +   I + + ++ L I +
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYIT---LANINVT-DLTG-IEYAHNIKDLTINN 75

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
                   P I  L+ L  L I    +       +  L  LT LD+  +     I   I+
Sbjct: 76  IHA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
              ++     S N     I   +  L  L+ LN+  + +       +     L  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 268 N 268
            
Sbjct: 191 Q 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 639 SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLR 698
           ++   L ++ L+N  +T      +     I +L +++ +     P  I   S L +L + 
Sbjct: 41  AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 699 GNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL 758
           G +++    P +  LT+L +L++  ++   +I + I    K+  + LS N     I   L
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L 155

Query: 759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG 801
             L EL+  L++  +         +    KL +L      + G
Sbjct: 156 KTLPELKS-LNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 31/180 (17%), Positives = 72/180 (40%), Gaps = 6/180 (3%)

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS 560
            +         S +  +T   ++ L  ITL N +    L   +     ++ +  ++   +
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD-LTG-IEYAHNIKDLTINNIHAT 79

Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620
            +  P++G ++L  L +     +      L+   +L+ L ++H+    +I ++   L ++
Sbjct: 80  -NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
           N +DLS+N     I P L    +L  L +  + +       +    ++ +L   S    G
Sbjct: 139 NSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
           S+ +  +      S    +   + +SL  + L++ +        ++    + DL +NN  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450
            T   P  I  LS LE L +    +T      +  L +L+ + +  +    SI  ++   
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK 510
             +  ID   N     I   +  L  L  L ++ + +       +    +L Q+      
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 511 LSG 513
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
            L++LE L +    +T      L  L +L +L +  ++    I  +I  L K+  + +  
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGL 201
           N    +I P +  L EL+ L I +  ++      I +   L  L      + G 
Sbjct: 146 NGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 27/208 (12%), Positives = 67/208 (32%), Gaps = 33/208 (15%)

Query: 401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFG 460
                 N  L  +       +   ++ +L+ I L +          +T+ +G+       
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN--------VTDLTGI------- 62

Query: 461 NHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFR 520
                          N+  L +     +   P  +     L+++ +    ++        
Sbjct: 63  -----------EYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 521 FLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNN 580
            L+ L L+ + +++    +   +  L K+  I+ S+N     I PL     L +L++  +
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169

Query: 581 SFSGPIPSELAMSRNLSRLRLAHNHLTG 608
                    +     L++L      + G
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 712 NLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLS 771
              A     L ++S +     T  Q   L  + L+    T      +     ++  L ++
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKD-LTIN 74

Query: 772 KNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF 831
             + +    P +  L  LERL I    +      +L  LTSL +L++S++     +    
Sbjct: 75  NIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 832 SGFP 835
           +  P
Sbjct: 133 NTLP 136

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 89.6 bits (223), Expect = 9e-20
 Identities = 61/223 (27%), Positives = 87/223 (39%), Gaps = 23/223 (10%)

Query: 609 NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP---FWLGSL 665
           N+P           LDLSFN      +       +L  L LS  E+  TI    +   SL
Sbjct: 25  NLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ--SL 75

Query: 666 QEIGELDLSSNNFNGTVPAEI-GNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQR 723
             +  L L+ N    ++        S L KL     NL+  +     G+L  L  LN+  
Sbjct: 76  SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAH 133

Query: 724 NSL-SGNIPSTIQQCKKLYELRLSENFFTGSIPAD----LGRLTELQVILDLSKNNFSGE 778
           N + S  +P        L  L LS N    SI       L ++  L + LDLS N  +  
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-F 191

Query: 779 IPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
           I P     ++L+ L +  NQL+        +LTSL  + L  N
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 51/210 (24%), Positives = 82/210 (39%), Gaps = 14/210 (6%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+LS + L    S  F +   L+ LDLS   +  +       L +L  L+L  N     +
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SL 91

Query: 131 PPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVE--IGNLK 186
                  L+ LQ L   +  L   +     G+L  L+EL +A+  +  S  +     NL 
Sbjct: 92  ALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLT 149

Query: 187 HLTSLDLQMNKLSGLIPEAIHGCEELQKFAA----SNNMLEGTIPSSIVLLKSLQILNLA 242
           +L  LDL  NK+  +    +    ++         S N +   I         L+ L L 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALD 208

Query: 243 NNSLSGSIPVE-LSHLFNLRYLNLLGNIFD 271
            N L  S+P      L +L+ + L  N +D
Sbjct: 209 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 51/211 (24%), Positives = 78/211 (36%), Gaps = 12/211 (5%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
            S + L L+ N L             LQ LDLS    +     +   L  L+ L+L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 391 FTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE--L 447
              S        LS L+ L   +  +       IG L+TL  + +  N +  S       
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF 145

Query: 448 TNCSGLTEIDFFGNHFSGSIPE-TMGKLKNLVI----LQLRQNDLSGPIPASLGYCKRLQ 502
           +N + L  +D   N    SI    +  L  + +    L L  N ++  I        RL+
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLK 203

Query: 503 QIALADNKLSGSVPLTFRFLSELYLITLYNN 533
           ++AL  N+L       F  L+ L  I L+ N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 49/214 (22%), Positives = 73/214 (34%), Gaps = 17/214 (7%)

Query: 282 AQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN 341
              + LDLS N L    S        L+ L LS      +I      + S L  LIL  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 342 KLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT-----GSFP 396
            +           SSLQ+L   + +        +  L+ L +L + +N          F 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 397 PEIGNLSKLENLFLFDNMITGKIPVEI----GKLQTLSA-IYLYDNQMSGSIPRELTNCS 451
               NL+ LE+L L  N I   I         ++  L+  + L  N M+  I        
Sbjct: 147 ----NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200

Query: 452 GLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
            L E+    N           +L +L  + L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 12/175 (6%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSG 728
            LDLS N           +  +L  L L    +   I      +L+ L+ L L  N +  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89

Query: 729 NIPSTI-QQCKKLYELRLSENFFTGSIPADL-GRLTELQVILDLSKNNF-SGEIPPSLGS 785
           ++          L +L   E     S+     G L  L+  L+++ N   S ++P    +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKE-LNVAHNLIQSFKLPEYFSN 147

Query: 786 LLKLERLNISYNQLQ---GQVPASLGKLTSLHV-LNLSNNHLQGQLPLTFSGFPL 836
           L  LE L++S N++Q         L ++  L++ L+LS N +    P  F    L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 54/279 (19%), Positives = 87/279 (31%), Gaps = 77/279 (27%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDN 413
            S + LDLS N  +     S     EL  L L+      +       +LS L  L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 414 MITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETM- 471
            I   + +     L +L  +   +  ++                         S+     
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLA-------------------------SLENFPI 120

Query: 472 GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLY 531
           G LK L  L +  N               +Q   L +          F  L+ L  + L 
Sbjct: 121 GHLKTLKELNVAHN--------------LIQSFKLPE---------YFSNLTNLEHLDLS 157

Query: 532 NNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSEL 590
           +N  +  +  +  + L ++ ++N S                   LDL+ N  +  I    
Sbjct: 158 SNKIQS-IYCTDLRVLHQMPLLNLS-------------------LDLSLNPMNF-IQPGA 196

Query: 591 AMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFN 628
                L  L L  N L  ++P   F +LT L  + L  N
Sbjct: 197 FKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 706 IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL-GRLTEL 764
           IP  +    +   L+L  N L      +     +L  L LS      +I       L+ L
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 765 QVILDLSKNNFSGEIPPSL-GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHL 823
              L L+ N     +       L  L++L      L       +G L +L  LN+++N +
Sbjct: 79  S-TLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 824 Q 824
           Q
Sbjct: 137 Q 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 9/108 (8%)

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL-GSLL 787
           N+P + +       L LS N              ELQ +LDLS+      I      SL 
Sbjct: 25  NLPFSTK------NLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQ-TIEDGAYQSLS 76

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
            L  L ++ N +Q     +   L+SL  L     +L            
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 51/258 (19%), Positives = 99/258 (38%), Gaps = 21/258 (8%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
                   +L   S+T  +     +L ++  ++  ++     +   I +L  +  L +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
           N L  +I P + NL  L  L +   ++     ++  +LK L SL L+ N +S +    + 
Sbjct: 78  NKL-TDIKP-LANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGISDI--NGLV 131

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
              +L+     NN +  T  + +  L  L  L+L +N +S  I   L+ L  L+ L L  
Sbjct: 132 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 187

Query: 268 N-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKF 326
           N I D      L  L  L+ L+L             + L    T+  +D +      I  
Sbjct: 188 NHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS- 243

Query: 327 CLNNSSLQQLILARNKLS 344
             ++   ++  +  +   
Sbjct: 244 --DDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 53/245 (21%), Positives = 89/245 (36%), Gaps = 21/245 (8%)

Query: 196 NKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELS 255
             +  +         E  K       +   +      L S+  +   N+ +  S+   + 
Sbjct: 12  TPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQ 65

Query: 256 HLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLS 314
           +L N+  L L GN + D      L  L  L  L L +N +   +S L   LK L++L L 
Sbjct: 66  YLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVK-DLSSLK-DLKKLKSLSLE 120

Query: 315 DNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRS 374
            N  +    +    +   L+ L L  NK++    L  L  + L  L L DN    ++   
Sbjct: 121 HNGISDINGLV---HLPQLESLYLGNNKITDITVLSRL--TKLDTLSLEDNQIS-DIV-P 173

Query: 375 LDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYL 434
           L  L +L +L L+ N  +      +  L  L+ L LF      K       L   + +  
Sbjct: 174 LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 435 YDNQM 439
            D  +
Sbjct: 232 TDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 17/229 (7%)

Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
              +  L    +T  +     +L  ++ +  + +     +   +     +  L L+ N+L
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKL 80

Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT 714
           T   P  L +L+ +G L L  N         + +  KL  LSL  N +S  I   + +L 
Sbjct: 81  TDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DING-LVHLP 134

Query: 715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNN 774
            L  L L  N ++    + + +  KL  L L +N  +  I   L  LT+LQ  L LSKN+
Sbjct: 135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN-LYLSKNH 189

Query: 775 FSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHL 823
            S ++   L  L  L+ L +   +   +       L   + +  ++  L
Sbjct: 190 IS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 17/209 (8%)

Query: 616 KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSS 675
              E    +L   S T  +    ++   +  ++ +N+++  ++   +  L  + +L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 676 NNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQ 735
           N      P  + N   L  L L  N +   +   + +L  L  L+L+ N +S +I   + 
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LV 131

Query: 736 QCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNIS 795
              +L  L L  N  T  I   L RLT+L   L L  N  S +I P L  L KL+ L +S
Sbjct: 132 HLPQLESLYLGNNKIT-DITV-LSRLTKLD-TLSLEDNQIS-DIVP-LAGLTKLQNLYLS 186

Query: 796 YNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
            N +      +L  L +L VL L +    
Sbjct: 187 KNHIS--DLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 61/301 (20%), Positives = 107/301 (35%), Gaps = 20/301 (6%)

Query: 382 TDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG 441
           ++ +         F       ++     L    +T  +     +L ++  I   ++ +  
Sbjct: 5   SETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK- 59

Query: 442 SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL 501
           S+   +     +T++   GN  +  I + +  LKNL  L L +N +       L   K+L
Sbjct: 60  SVQ-GIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVKDLSS--LKDLKKL 114

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSG 561
           + ++L  N +S    L    L +L  + L NN         L +L KL  ++   N+ S 
Sbjct: 115 KSLSLEHNGISDINGLVH--LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS- 169

Query: 562 SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELN 621
            I PL G   L  L L+ N  S      LA  +NL  L L          +    L   N
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 622 FLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
            +  +  S             +  ++     E T  + F       IG+   +   F+G 
Sbjct: 228 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK---AKARFHGR 284

Query: 682 V 682
           V
Sbjct: 285 V 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 50/254 (19%), Positives = 93/254 (36%), Gaps = 43/254 (16%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L L+ + L+  I     NL +L  L L  N +  L  S L  L+ L+ L L  N  S   
Sbjct: 73  LFLNGNKLT-DIK-PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGIS--- 125

Query: 131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTS 190
                                 +I   + +L +L  L +   ++       +  L  L +
Sbjct: 126 ----------------------DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDT 160

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           L L+ N++S +    + G  +LQ    S N +      ++  LK+L +L L +       
Sbjct: 161 LSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 216

Query: 251 PVELSHLFNLRYLNLLGNIFDGEI--PSELNKLAQLEELDLSKNNLSGSISLLNTQLKNL 308
               S+L     +       DG +  P  ++     E+ ++ K +L    + ++      
Sbjct: 217 INHQSNLVVPNTVKNT----DGSLVTPEIISDDGDYEKPNV-KWHLPEFTNEVSFIFYQP 271

Query: 309 ETLVLSDNAFTGSI 322
            T+  +   F G +
Sbjct: 272 VTIGKAKARFHGRV 285

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 87.9 bits (218), Expect = 4e-19
 Identities = 55/233 (23%), Positives = 89/233 (38%), Gaps = 35/233 (15%)

Query: 86  FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVLR 144
              + S   ++    +LT  +P +L   ++  IL L  N               +L  L 
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLN 61

Query: 145 IGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPE 204
           +    L        G L  L  L +++ QL  S+P+    L  LT LD+  N+L+ L   
Sbjct: 62  LDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 205 AIHGCEELQKFAASNNMLEGTIPSSI-VLLKSLQILNLANNSLSGSIPVELSHLFNLRYL 263
           A+ G  ELQ+     N L+ T+P  +      L+ L+LANN+L+  +P            
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPA----------- 165

Query: 264 NLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316
                + +         L  L+ L L +N+L  +I         L    L  N
Sbjct: 166 ----GLLN--------GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 49/260 (18%), Positives = 81/260 (31%), Gaps = 62/260 (23%)

Query: 565 PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
            ++   S   ++    + +  +P +L   ++ + L L+ N L     +     T L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
           L     T            L  L LS+N+L                          ++P 
Sbjct: 62  LDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-------------------------SLPL 94

Query: 685 EIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYEL 743
                  L  L +  N L+  +P      L  L  L L+ N L                 
Sbjct: 95  LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK---------------- 137

Query: 744 RLSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSL-GSLLKLERLNISYNQLQG 801
                    ++P  L     +L+  L L+ NN + E+P  L   L  L+ L +  N L  
Sbjct: 138 ---------TLPPGLLTPTPKLE-KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT 186

Query: 802 QVPASLGKLTSLHVLNLSNN 821
            +P        L    L  N
Sbjct: 187 -IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.1 bits (203), Expect = 4e-17
 Identities = 50/190 (26%), Positives = 74/190 (38%), Gaps = 11/190 (5%)

Query: 274 IPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSL 333
           +P +L        L LS+N L             L  L L     T  + +   L    L
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPV--L 79

Query: 334 QQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG 393
             L L+ N+L    PL      +L  LD+S N        +L  L EL +L L  N    
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137

Query: 394 SFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCS 451
           + PP +     KLE L L +N +T ++P  +   L+ L  + L +N +  +IP+      
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 452 GLTEIDFFGN 461
            L      GN
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
            L LS N       A +   ++L +L+L    L+       G L  L  L+L  N L  +
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-S 91

Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSL-GSLL 787
           +P   Q    L  L +S N  T S+P      L ELQ  L L  N     +PP L     
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ-ELYLKGNELK-TLPPGLLTPTP 148

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           KLE+L+++ N L       L  L +L  L L  N L 
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 33/232 (14%)

Query: 327 CLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLL 386
               +S  ++   +  L+   P +L        L LS+N        +L     LT L L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 387 NNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE 446
           +    T       G L  L  L L  N +   +P+    L  L+ + +  N+++ S+P  
Sbjct: 63  DRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 447 LTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIAL 506
                             G        L  L  L L+ N+L    P  L    +L++++L
Sbjct: 119 A---------------LRG--------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 507 ADNKLSGSVPL-TFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN 557
           A+N L+  +P      L  L  + L  NS    +P   F    L       N
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.4 bits (178), Expect = 7e-14
 Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSG 728
           E++    N    +P ++        L L  N L            T L  LNL R  L+ 
Sbjct: 14  EVNCDKRNL-TALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT- 68

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL-GSLL 787
            +         L  L LS N    S+P     L  L  +LD+S N  +  +P      L 
Sbjct: 69  KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALT-VLDVSFNRLT-SLPLGALRGLG 124

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           +L+ L +  N+L+   P  L     L  L+L+NN+L 
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+LS + L  S+      L +L  LD+S N LT L    L  L  L+ L L  N     +
Sbjct: 82  LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139

Query: 131 PPEIGF--LNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEIGNLKH 187
           PP +      KL+ L + +N L  E+P  +   L  L  L +    L  +IP        
Sbjct: 140 PPGL-LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 188 LTSLDLQMN 196
           L    L  N
Sbjct: 197 LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 13/116 (11%)

Query: 712 NLTALNVLNLQRNSLS---GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVIL 768
            + +   +N  + +L+    ++P           L LSEN       A L   T L   L
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKDTT------ILHLSENLLYTFSLATLMPYTRLTQ-L 60

Query: 769 DLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           +L +   +       G+L  L  L++S+NQLQ  +P     L +L VL++S N L 
Sbjct: 61  NLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.3 bits (204), Expect = 2e-16
 Identities = 82/438 (18%), Positives = 146/438 (33%), Gaps = 63/438 (14%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQ-LQNLRILLLYSNSFSGK----IPPEIGFLNKLQVLR 144
             +++LD+    L+    +EL   LQ  +++ L     +      I   +     L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 145 IGDNLLWGEIPPHIGNL-----TELRELAIAYCQLN----GSIPVEIGNLKHLTSLDLQM 195
           +  N L       +         ++++L++  C L     G +   +  L  L  L L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 196 NKLSG----LIPEAI-HGCEELQKFAASNNMLEGT----IPSSIVLLKSLQILNLANNSL 246
           N L      L+ E +      L+K       L       + S +      + L ++NN +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 247 SGSIPVELSHLF-----NLRYLNLLGNIFDGE----IPSELNKLAQLEELDLSKNNL--S 295
           + +    L          L  L L       +    +   +   A L EL L  N L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 296 GSISLLNTQLK---NLETLVLSDNAFT--GSIPIKFCL-NNSSLQQLILARNKLSGEFPL 349
           G   L    L     L TL + +   T  G   +   L    SL++L LA N+L  E   
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 350 ELLR-----CSSLQQLDLSDNSFKGE----LPRSLDKLEELTDLLLNNNSFTGSFPPEIG 400
            L          L+ L +   SF           L +   L +L ++NN    +   E+ 
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 401 -----NLSKLENLFLFDNMITGKIPVEIGKL----QTLSAIYLYDNQMSGSIPREL---- 447
                  S L  L+L D  ++      +        +L  + L +N +  +   +L    
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422

Query: 448 -TNCSGLTEIDFFGNHFS 464
                 L ++  +  ++S
Sbjct: 423 RQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 62/329 (18%), Positives = 107/329 (32%), Gaps = 51/329 (15%)

Query: 546 LKKLRIINFSHNKFSGS-----IYPLTGSNSLTALDLTNNSFSGPIPSELA-----MSRN 595
           L++ +++       + +        L  + +L  L+L +N         +       S  
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 596 LSRLRLAHNHLT----GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK-----CAKLAH 646
           + +L L +  LT    G + S    L  L  L LS N         L +       +L  
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 647 LLLSNNELTGT----IPFWLGSLQEIGELDLSSNNFNGTVPAEIG-----NCSKLLKLSL 697
           L L    L+      +   L +  +  EL +S+N+ N      +      +  +L  L L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 698 RGNNLSGK----IPPEIGNLTALNVLNLQRNSLSGN-----IPSTIQQCKKLYELRLSEN 748
               ++      +   + +  +L  L L  N L         P  +    +L  L + E 
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 749 FFT----GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLK-----LERLNISYNQL 799
             T    G +   L     L+  L L+ N    E    L   L      LE L +     
Sbjct: 267 GITAKGCGDLCRVLRAKESLKE-LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

Query: 800 QGQ----VPASLGKLTSLHVLNLSNNHLQ 824
                    + L +   L  L +SNN L+
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 1e-15
 Identities = 76/427 (17%), Positives = 140/427 (32%), Gaps = 75/427 (17%)

Query: 284 LEELDLSKNNLS-GSISLLNTQLKNLETLVLSDNAFT--GSIPIKFCL-NNSSLQQLILA 339
           ++ LD+    LS    + L   L+  + + L D   T      I   L  N +L +L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 340 RNKLSGEFPLELLRC-----SSLQQLDLSDNSFKGE----LPRSLDKLEELTDLLLNNNS 390
            N+L       +L+        +Q+L L +    G     L  +L  L  L +L L++N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 391 FTGSFPPEIG-----NLSKLENLFLFDNMITGKIPVEIGKL----QTLSAIYLYDNQMSG 441
              +    +         +LE L L    ++      +  +         + + +N ++ 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 442 SIPREL-----TNCSGLTEIDFFGNHFS----GSIPETMGKLKNLVILQLRQNDLSGP-- 490
           +  R L      +   L  +       +      +   +    +L  L L  N L     
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244

Query: 491 ---IPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLK 547
               P  L    RL+ + + +  ++         L                    L   +
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGIT---AKGCGDLCR-----------------VLRAKE 284

Query: 548 KLRIINFSHNKFSGS-----IYPLTGSN-SLTALDLTNNSFSG----PIPSELAMSRNLS 597
            L+ ++ + N+            L      L +L + + SF+        S LA +R L 
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344

Query: 598 RLRLAHNHLTGNIPSEFGKL-----TELNFLDLSFNSFTGQ----IAPQLSKCAKLAHLL 648
            L++++N L      E  +      + L  L L+    +      +A  L     L  L 
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 649 LSNNELT 655
           LSNN L 
Sbjct: 405 LSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 4e-15
 Identities = 80/413 (19%), Positives = 137/413 (33%), Gaps = 62/413 (15%)

Query: 66  KHVVGLNLSSSGLS----GSISRDFLNLTSLETLDLSSNSLTGLIPSELGQL-----QNL 116
           +    + L   GL+      IS       +L  L+L SN L  +    + Q        +
Sbjct: 28  QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 87

Query: 117 RILLLYSNSFSGK----IPPEIGFLNKLQVLRIGDNLLWGEIPPHIG-----NLTELREL 167
           + L L +   +G     +   +  L  LQ L + DNLL       +          L +L
Sbjct: 88  QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147

Query: 168 AIAYCQLNGSIPVEIG----NLKHLTSLDLQMNKLSG----LIPEAIHGCEE-LQKFAAS 218
            + YC L+ +    +            L +  N ++     ++ + +      L+     
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 219 NNMLE----GTIPSSIVLLKSLQILNLANNSLSGS-----IPVELSHLFNLRYLNLLGNI 269
           +  +       +   +    SL+ L L +N L         P  L     LR L +    
Sbjct: 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267

Query: 270 FDGE----IPSELNKLAQLEELDLSKNNLSGS-----ISLLNTQLKNLETLVLSDNAFT- 319
              +    +   L     L+EL L+ N L           L      LE+L +   +FT 
Sbjct: 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 320 -GSIPIKFCL-NNSSLQQLILARNKLSGEFPLELLR-----CSSLQQLDLSDNSFKGE-- 370
                    L  N  L +L ++ N+L      EL +      S L+ L L+D        
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387

Query: 371 --LPRSLDKLEELTDLLLNNNSFTGSFPPEIG-----NLSKLENLFLFDNMIT 416
             L  +L     L +L L+NN    +   ++          LE L L+D   +
Sbjct: 388 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 4e-15
 Identities = 74/426 (17%), Positives = 135/426 (31%), Gaps = 75/426 (17%)

Query: 453 LTEIDFFGNHFS-GSIPETMGKLKNLVILQLRQNDLS----GPIPASLGYCKRLQQIALA 507
           +  +D      S     E +  L+   +++L    L+      I ++L     L ++ L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 508 DNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP-- 565
            N+L          + +     L   S             K++ ++  +   +G+     
Sbjct: 65  SNELGDV---GVHCVLQ----GLQTPS------------CKIQKLSLQNCCLTGAGCGVL 105

Query: 566 ---LTGSNSLTALDLTNNSFSGPIPSELAMSR-----NLSRLRLAHNHLT----GNIPSE 613
              L    +L  L L++N         L          L +L+L +  L+      + S 
Sbjct: 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165

Query: 614 FGKLTELNFLDLSFNSFTGQIAPQLSKC-----AKLAHLLLSNNELT----GTIPFWLGS 664
                +   L +S N         L +       +L  L L +  +T      +   + S
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 665 LQEIGELDLSSNNFNGT-----VPAEIGNCSKLLKLSLRGNNLSGK----IPPEIGNLTA 715
              + EL L SN           P  +   S+L  L +    ++ K    +   +    +
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 716 LNVLNLQRNSLSGN-----IPSTIQQCKKLYELRLSENFFTG----SIPADLGRLTELQV 766
           L  L+L  N L          + ++   +L  L +    FT        + L +   L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL- 344

Query: 767 ILDLSKNNFSGEIPPSLGSLLK-----LERLNISYNQLQGQVPASLGKL----TSLHVLN 817
            L +S N         L   L      L  L ++   +     +SL        SL  L+
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 818 LSNNHL 823
           LSNN L
Sbjct: 405 LSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.3 bits (191), Expect = 7e-15
 Identities = 58/297 (19%), Positives = 94/297 (31%), Gaps = 42/297 (14%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMS-RNLSRLRLAHNHLT----GNIPSEFGKLTELNFL 623
           S  + +LD+     S    +EL    +    +RL    LT     +I S       L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 624 DLSFNSFTGQIAPQLSKC-----AKLAHLLLSNNELTGT----IPFWLGSLQEIGELDLS 674
           +L  N         + +       K+  L L N  LTG     +   L +L  + EL LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 675 SNNFNGTVPAEIG-----NCSKLLKLSLRGNNLSGK----IPPEIGNLTALNVLNLQRNS 725
            N         +         +L KL L   +LS      +   +        L +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 726 LSG----NIPSTIQQCK-KLYELRLSENFFT----GSIPADLGRLTELQVILDLSKNNFS 776
           ++      +   ++    +L  L+L     T      +   +     L+  L L  N   
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE-LALGSNKLG 240

Query: 777 GE-----IPPSLGSLLKLERLNISYNQLQGQ----VPASLGKLTSLHVLNLSNNHLQ 824
                   P  L    +L  L I    +  +    +   L    SL  L+L+ N L 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.6 bits (184), Expect = 5e-14
 Identities = 82/490 (16%), Positives = 149/490 (30%), Gaps = 96/490 (19%)

Query: 355 SSLQQLDLSDNSFKGE-LPRSLDKLEELTDLLLNNNSFTGSFPPEIG----NLSKLENLF 409
             +Q LD+             L  L++   + L++   T +   +I         L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 410 LFDNMITGKIPVEIGKL-----QTLSAIYLYDNQMS----GSIPRELTNCSGLTEIDFFG 460
           L  N +       + +        +  + L +  ++    G +   L     L E+    
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 461 NHFSGSIPETMGKL-----KNLVILQLRQNDLS----GPIPASLGYCKRLQQIALADNKL 511
           N    +  + + +        L  LQL    LS     P+ + L      +++ +++N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 512 SGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGS-----IYPL 566
           + +     R L +              L  S  QL+ L++        +          +
Sbjct: 183 NEAG---VRVLCQG-------------LKDSPCQLEALKL---ESCGVTSDNCRDLCGIV 223

Query: 567 TGSNSLTALDLTNNSFSGP-----IPSELAMSRNLSRLRLAHNHLT----GNIPSEFGKL 617
               SL  L L +N           P  L  S  L  L +    +T    G++       
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 618 TELNFLDLSFNSFTGQIAPQLSK-----CAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672
             L  L L+ N    + A  L +       +L  L + +   T               + 
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------CCSHFSSV- 336

Query: 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIG-----NLTALNVLNLQRNSLS 727
                        +     LL+L +  N L      E+        + L VL L    +S
Sbjct: 337 -------------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 728 ----GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRL-----TELQVILDLSKNNFSGE 778
                ++ +T+     L EL LS N    +    L          L+  L L    +S E
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ-LVLYDIYWSEE 442

Query: 779 IPPSLGSLLK 788
           +   L +L K
Sbjct: 443 MEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.8 bits (174), Expect = 9e-13
 Identities = 83/477 (17%), Positives = 156/477 (32%), Gaps = 96/477 (20%)

Query: 403 SKLENLFLFDNMITGKIPVEIGK-LQTLSAIYLYDNQMS----GSIPRELTNCSGLTEID 457
             +++L +    ++     E+   LQ    + L D  ++      I   L     L E++
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 458 FFGNHFSGSIPETMGK-LKN----LVILQLRQNDLS----GPIPASLGYCKRLQQIALAD 508
              N         + + L+     +  L L+   L+    G + ++L     LQ++ L+D
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 509 NKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP--- 565
           N L  +     + L E     L                 +L  +   +   S +      
Sbjct: 123 NLLGDA---GLQLLCEG---LLDPQC-------------RLEKLQLEYCSLSAASCEPLA 163

Query: 566 --LTGSNSLTALDLTNNSFSGPIPSELA-----MSRNLSRLRLAHNHLT----GNIPSEF 614
             L        L ++NN  +      L          L  L+L    +T     ++    
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 615 GKLTELNFLDLSFNSFTGQIAPQLSK-----CAKLAHLLLSNNELT----GTIPFWLGSL 665
                L  L L  N        +L        ++L  L +    +T    G +   L + 
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 666 QEIGELDLSSNNFNGTVPAEIGN-CSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724
           + + EL L+ N         +G+  ++LL  +L                  L  L ++  
Sbjct: 284 ESLKELSLAGNE--------LGDEGARLLCETLLEPG------------CQLESLWVKSC 323

Query: 725 SLSG----NIPSTIQQCKKLYELRLSENFFTGSIPADLGRL-----TELQVILDLSKNNF 775
           S +     +  S + Q + L EL++S N    +   +L +      + L+V L L+  + 
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV-LWLADCDV 382

Query: 776 SGEIPPSLGSLLK----LERLNISYNQLQGQVPASLGKL-----TSLHVLNLSNNHL 823
           S     SL + L     L  L++S N L       L +        L  L L + + 
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.5 bits (150), Expect = 7e-10
 Identities = 52/268 (19%), Positives = 83/268 (30%), Gaps = 36/268 (13%)

Query: 592 MSRNLSRLRLAHNHLTGNIPSEFGK-LTELNFLDLSFNSFTGQ----IAPQLSKCAKLAH 646
           MS ++  L +    L+    +E    L +   + L     T      I+  L     LA 
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 647 LLLSNNELTGT-IPFWLGSLQE----IGELDLSSNNFNGTVPAEIG----NCSKLLKLSL 697
           L L +NEL    +   L  LQ     I +L L +    G     +         L +L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 698 RGNNLSGKIPPEIG-----NLTALNVLNLQRNSLS----GNIPSTIQQCKKLYELRLSEN 748
             N L       +          L  L L+  SLS      + S ++      EL +S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 749 FFTGS----IPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLK----LERLNISYNQLQ 800
               +    +   L         L L     + +    L  ++     L  L +  N+L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 801 GQ-----VPASLGKLTSLHVLNLSNNHL 823
                   P  L   + L  L +    +
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGI 268

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 55/257 (21%), Positives = 95/257 (36%), Gaps = 16/257 (6%)

Query: 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSF 630
           S        +  +  IPS+L   RN   LR     L       F    +L  +++S N  
Sbjct: 10  SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 631 TGQIAPQ-LSKCAKLAHLLLSN-NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGN 688
              I     S   KL  + +   N L    P    +L  +  L +S+            +
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 689 CSKLLKLSLRGNNLSGKIPPE-IGNLTA-LNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
             + + L ++ N     I       L+    +L L +N +   I ++     +L EL LS
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 747 ENFFTGSIPAD-LGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVP 804
           +N     +P D     +    ILD+S+      +P   L +L KL   +    +   ++P
Sbjct: 186 DNNNLEELPNDVFHGASGPV-ILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP 240

Query: 805 ASLGKLTSLHVLNLSNN 821
            +L KL +L   +L+  
Sbjct: 241 -TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 42/234 (17%), Positives = 75/234 (32%), Gaps = 14/234 (5%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVLRIGDN 148
            +   L      L  +         +L  + +  N     I  ++   L KL  +RI   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 149 LLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMN-KLSGLIPEA 205
                I P    NL  L+ L I+   +   +P     +      LD+Q N  +  +   +
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 206 IHGC-EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYL 263
             G   E      + N ++    S+    +  ++    NN+L   +P +          L
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL 207

Query: 264 NLLGNIFDGEIPSE-LNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316
           ++        +PS  L  L +L        NL    +L    L  L    L+  
Sbjct: 208 DISRTRIH-SLPSYGLENLKKLRARST--YNLKKLPTLEK--LVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 45/257 (17%), Positives = 88/257 (34%), Gaps = 16/257 (6%)

Query: 332 SLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
           S +  +   +K++ E P +L R  +  +L       +     +     +L  + ++ N  
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 392 TGSFPPEI-GNLSKLENLFLFD-NMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPREL- 447
                 ++  NL KL  + +   N +   I  E    L  L  + + +  +   +P    
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 448 TNCSGLTEIDFFGNHFSGSIPETM--GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIA 505
            +      +D   N    +I      G     VIL L +N +     ++    +  +   
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 506 LADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIY 564
             +N L       F   S   ++ +        LP    + LKKLR  +  + K   ++ 
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLE 243

Query: 565 PLTGSNSLTALDLTNNS 581
            L    +L    LT  S
Sbjct: 244 KLV---ALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.9 bits (179), Expect = 9e-14
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 7/186 (3%)

Query: 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-GNCSKLLKLSLRGNNL 702
              L     +L            ++ ++++S N+    + A++  N  KL ++ +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 703 SGKIPPEI-GNLTALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFFTGSIPAD-LG 759
              I PE   NL  L  L +    +  ++P        +   L + +N    +I  +   
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 760 RLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNIS-YNQLQGQVPASLGKLTSLHVLNL 818
            L+   VIL L+KN    EI  S  +  +L+ LN+S  N L+          +   +L++
Sbjct: 151 GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 819 SNNHLQ 824
           S   + 
Sbjct: 210 SRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.2 bits (172), Expect = 6e-13
 Identities = 47/282 (16%), Positives = 83/282 (29%), Gaps = 37/282 (13%)

Query: 353 RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD 412
            CS+ +     ++    E+P  L       +L                    LE + +  
Sbjct: 8   HCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63

Query: 413 NMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSGSIPE- 469
           N +   I  ++   L  L  I +        I  E   N   L  +          +P+ 
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDV 122

Query: 470 TMGKLKNLVILQLRQNDLSGPIP--ASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYL 527
                   V+L ++ N     I   + +G       + L  N +       F       L
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 528 ITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIP 587
               NN+ +  LP  +F                       G++    LD++       +P
Sbjct: 183 NLSDNNNLEE-LPNDVFH----------------------GASGPVILDISRTRIH-SLP 218

Query: 588 SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629
           S      NL +LR    +    +P+   KL  L    L++ S
Sbjct: 219 SYGL--ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 86  FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI--GFLNKLQVL 143
           F NL +L+ L +S+  +  L            +L +  N     I      G   +  +L
Sbjct: 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159

Query: 144 RIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLI 202
            +  N +  EI     N T+L EL ++       +P ++         LD+   ++  L 
Sbjct: 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218

Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
              +   ++L+  +  N      +P ++  L +L   +L   S
Sbjct: 219 SYGLENLKKLRARSTYNL---KKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 42/217 (19%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
           EIPS+L       EL      L        +   +LE + +S N     I      N   
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 333 LQQLILAR-NKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
           L ++ + + N L    P       +LQ L +S+   K           +   L + +N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 392 TGSFPPEI--GNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRE-LT 448
             +       G   +   L+L  N I  +I         L  + L DN     +P +   
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 449 NCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
             SG   +D             +  LK L        
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSG 728
                 +     +P+++      ++L      L   I          L  + + +N +  
Sbjct: 13  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 729 NIPS-TIQQCKKLYELRLSENFFTGSIPAD-LGRLTELQVILDLSKNNFSGEIPP-SLGS 785
            I +       KL+E+R+ +      I  +    L  LQ  L +S       +P      
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ-YLLISNTGIK-HLPDVHKIH 126

Query: 786 LLKLERLNISYN-QLQGQVPASLGKLTS-LHVLNLSNNHLQGQLPLTFSGFPLSS--FLG 841
            L+   L+I  N  +      S   L+    +L L+ N +Q      F+G  L       
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

Query: 842 NAKLCGPPLLSCSELSGQKVKRLSNTAVVVI 872
           N  L   P       SG  +  +S T +  +
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 12/129 (9%)

Query: 717 NVLNLQRNSLS---GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKN 773
            V   Q + ++    ++P          ELR                  +L+  +++S+N
Sbjct: 12  RVFLCQESKVTEIPSDLPRNAI------ELRFVLTKLRVIQKGAFSGFGDLE-KIEISQN 64

Query: 774 NFSGEIPPS-LGSLLKLERLNIS-YNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF 831
           +    I      +L KL  + I   N L    P +   L +L  L +SN  ++    +  
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124

Query: 832 SGFPLSSFL 840
                   L
Sbjct: 125 IHSLQKVLL 133

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 80.6 bits (198), Expect = 1e-15
 Identities = 47/273 (17%), Positives = 91/273 (33%), Gaps = 13/273 (4%)

Query: 92  LETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLW 151
           L    L+                + +  +L  +        +     +L    +      
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKST 362

Query: 152 GEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
             +   + +  EL+EL         +I + +  L  L      +   S L  +A+     
Sbjct: 363 -VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL--KAVDPMRA 419

Query: 212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFD 271
                  +  L        +    +++L+LA+  L+  +   L  L  + +L+L  N   
Sbjct: 420 AYLDDLRSKFLLEN-SVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR 476

Query: 272 GEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNS 331
             +P  L  L  LE L  S N L  ++  +   L  L+ L+L +N    S  I+  ++  
Sbjct: 477 -ALPPALAALRCLEVLQASDNALE-NVDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 332 SLQQLILARNKLSGEFPLE---LLRCSSLQQLD 361
            L  L L  N L  E  ++        S+  + 
Sbjct: 534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 76.3 bits (187), Expect = 2e-14
 Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 13/224 (5%)

Query: 603 HNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWL 662
                     +     +L   +LS    T  +  +L  C +L  L   N     TI   +
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 663 GSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQ 722
            +L  +     +   F+     +  +  +   L    +    +          + VL+L 
Sbjct: 393 RALDPLLYEKETLQYFSTL---KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 723 RNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPS 782
              L+  +   ++Q   +  L LS N    ++P  L  L  L+V L  S N     +   
Sbjct: 450 HKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV-LQASDNALE-NVDG- 503

Query: 783 LGSLLKLERLNISYNQLQGQVPA--SLGKLTSLHVLNLSNNHLQ 824
           + +L +L+ L +  N+LQ Q  A   L     L +LNL  N L 
Sbjct: 504 VANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 9e-12
 Identities = 55/277 (19%), Positives = 87/277 (31%), Gaps = 24/277 (8%)

Query: 553 NFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPS 612
             +     G++  +     L+    T +  + P    L      S       H    I +
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672
                 E   L      +    A        L    LS  + T  +   L S +E+ EL+
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQ----LFRCELSVEKST-VLQSELESCKELQELE 378

Query: 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL-----QRNSLS 727
             +     T+   +     LL         S         L A++ +        R+   
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFS--------TLKAVDPMRAAYLDDLRSKFL 430

Query: 728 GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL 787
                   +   +  L L+    T  +   L +L  +   LDLS N     +PP+L +L 
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVT-HLDLSHNRLR-ALPPALAALR 486

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
            LE L  S N L  +    +  L  L  L L NN LQ
Sbjct: 487 CLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.7 bits (149), Expect = 7e-10
 Identities = 50/305 (16%), Positives = 83/305 (27%), Gaps = 58/305 (19%)

Query: 352 LRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLF 411
           +    L    L+D   +          +   + +L  +     +  +     +L    L 
Sbjct: 299 VWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELS 357

Query: 412 DNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETM 471
               T  +  E+   + L  +   +          LT    +  +D           ET+
Sbjct: 358 VEKST-VLQSELESCKELQELEPENKWCL------LTIILLMRALDPLLYE-----KETL 405

Query: 472 GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLY 531
                L  +           P    Y   L+   L +N +        R L       L 
Sbjct: 406 QYFSTLKAV----------DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH------LA 449

Query: 532 NNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELA 591
           +      +   L QL  +  ++ SHN+                           +P  LA
Sbjct: 450 HKDLT--VLCHLEQLLLVTHLDLSHNRLRA------------------------LPPALA 483

Query: 592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG-QIAPQLSKCAKLAHLLLS 650
             R L  L+ + N L  N+      L  L  L L  N          L  C +L  L L 
Sbjct: 484 ALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 651 NNELT 655
            N L 
Sbjct: 542 GNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 9e-10
 Identities = 48/339 (14%), Positives = 106/339 (31%), Gaps = 43/339 (12%)

Query: 268 NIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFC 327
            +  G     L  +     L +      G     +  L +L    L+D     +  + + 
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 328 LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLN 387
            ++S  + ++L        +  +      L + +LS       L   L+  +EL +L   
Sbjct: 324 GSDSQKECVLLKDRPEC--WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPE 380

Query: 388 NNSFT---GSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIP 444
           N             +  L   +    + + +    P+    L  L + +L +N +     
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL---- 436

Query: 445 RELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQI 504
                 + +  +       +  +   + +L  +  L L  N L   +P +L   + L+ +
Sbjct: 437 --KMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVL 491

Query: 505 ALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSG--S 562
             +DN L          +  +                    L +L+ +   +N+     +
Sbjct: 492 QASDNALE--------NVDGVA------------------NLPRLQELLLCNNRLQQSAA 525

Query: 563 IYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRL 601
           I PL     L  L+L  NS       +  ++  L  +  
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 20/238 (8%)

Query: 182 IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNL 241
              L +    +L    ++ L+         +Q F   N+ +     + +    +L+ L+L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHL 70

Query: 242 ANNSLSGSIPVELSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSKNNLSGSISL 300
           ++N +S   P  L  L  L  L++  N + +            L  L L  N L      
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELR-DTDS 123

Query: 301 LNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQL 360
           L   LKNLE L + +N       I      S L+ L L  N+++    L  L    +  +
Sbjct: 124 LI-HLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEITNTGGLTRL--KKVNWI 177

Query: 361 DLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGK 418
           DL+      E  +   +L     +   +  +    P  I N     +  +   +    
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 51/258 (19%), Positives = 94/258 (36%), Gaps = 44/258 (17%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
            L +    +L   S+T L+     +L  ++     +++    +   + F   L+ L +  
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSH 72

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
           N +  ++ P + +LT+L EL++   +L     +       L+ L L  N+L         
Sbjct: 73  NQI-SDLSP-LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDT------ 121

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
                                S++ LK+L+IL++ NN L  SI   L  L  L  L+L G
Sbjct: 122 --------------------DSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHG 159

Query: 268 N-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKF 326
           N I +      L +L ++  +DL+             +L    T+   D      I   +
Sbjct: 160 NEITN---TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR---WISPYY 213

Query: 327 CLNNSSLQQLILARNKLS 344
             N  S     +      
Sbjct: 214 ISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 49/225 (21%), Positives = 81/225 (36%), Gaps = 20/225 (8%)

Query: 193 LQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV 252
            +   ++ + P    G     K       +  T   S   L  +Q  N  N+++  S+  
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SLA- 57

Query: 253 ELSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETL 311
            +    NL+ L+L  N I D    S L  L +LEEL +++N L    +L       L  L
Sbjct: 58  GMQFFTNLKELHLSHNQISD---LSPLKDLTKLEELSVNRNRLK---NLNGIPSACLSRL 111

Query: 312 VLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGEL 371
            L +N    +  +    +  +L+ L +  NKL     L  L  S L+ LDL  N      
Sbjct: 112 FLDNNELRDTDSLI---HLKNLEILSIRNNKLKSIVMLGFL--SKLEVLDLHGNEITNTG 166

Query: 372 PRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMIT 416
              L +L+++  + L               L     +   D    
Sbjct: 167 G--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 40/227 (17%)

Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
           N  +  L    +T        +L+ +   +   ++    +A  +     L  L LS+N++
Sbjct: 20  NAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQI 75

Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT 714
           +   P  L  L ++ EL ++ N             + L +L L  N L       + +L 
Sbjct: 76  SDLSP--LKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELR-DTDS-LIHLK 128

Query: 715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNN 774
            L +L+++ N L  +I   +    KL  L L  N                  I +     
Sbjct: 129 NLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNE-----------------ITNTG--- 166

Query: 775 FSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
                   L  L K+  ++++  +   +      +L   + +   + 
Sbjct: 167 -------GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 14/201 (6%)

Query: 423 IGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQL 482
              L       L    ++  +       SG+   +   ++   S+   M    NL  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70

Query: 483 RQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPS 542
             N +S   P  L    +L+++++  N+L     +    LS L+L    NN  +     S
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL---DNNELRDT--DS 123

Query: 543 LFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLA 602
           L  LK L I++  +NK   SI  L   + L  LDL  N  +      L   + ++ + L 
Sbjct: 124 LIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180

Query: 603 HNHLTGNIPSEFGKLTELNFL 623
                        +L   N +
Sbjct: 181 GQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 686 IGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRL 745
               +  +K +L   +++  +      L+ +   N   +++  ++ + +Q    L EL L
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHL 70

Query: 746 SENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPA 805
           S N  +  +   L  LT+L+  L +++N     +         L RL +  N+L+     
Sbjct: 71  SHNQIS-DLSP-LKDLTKLEE-LSVNRNRLK-NLNG--IPSACLSRLFLDNNELRD--TD 122

Query: 806 SLGKLTSLHVLNLSNNHL 823
           SL  L +L +L++ NN L
Sbjct: 123 SLIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 15/212 (7%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
           ++  +  L +  ++     + L  S +Q  +  +++ +      +     L +L L++N 
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQ 74

Query: 391 FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC 450
            +   P  + +L+KLE L +  N +     +       LS ++L +N++       L + 
Sbjct: 75  ISDLSP--LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--TDSLIHL 127

Query: 451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK 510
             L  +    N    SI   +G L  L +L L  N+++      L   K++  I L   K
Sbjct: 128 KNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

Query: 511 LSGSVPLTFRFLSELYLITLYNNSFKGPLPPS 542
                      L     +   +  +  P   S
Sbjct: 184 CVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA 756
            R   ++ ++ P    L      NL + S++     + ++   +       +    S+  
Sbjct: 4   QRPTPIN-QVFP-DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLAG 58

Query: 757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVL 816
            +   T L+  L LS N  S ++ P L  L KLE L+++ N+L+     +      L  L
Sbjct: 59  -MQFFTNLKE-LHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN---LNGIPSACLSRL 111

Query: 817 NLSNNHLQ 824
            L NN L+
Sbjct: 112 FLDNNELR 119

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+L S+ LS   S+ F  LT L  L L+ N L  L      +L+NL  L +  N     +
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-AL 100

Query: 131 PPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKH 187
           P  +   L  L  LR+  N L   +PP +  +LT+L  L++ Y +L  S+P  +   L  
Sbjct: 101 PIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS 158

Query: 188 LTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
           L  L L  N+L  +   A     EL+     NN L+     +   L+ L++L L  N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 61/203 (30%), Positives = 86/203 (42%), Gaps = 31/203 (15%)

Query: 225 TIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN--------IFDGEIPS 276
            IPS+I      + L+L +N LS         L  LR L L  N        IF      
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---- 83

Query: 277 ELNKLAQLEELDLSKNNLSGSISL-LNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQ 335
               L  LE L ++ N L  ++ + +  QL NL  L L  N    S+P +   + + L  
Sbjct: 84  ----LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY 137

Query: 336 LILARNKL----SGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
           L L  N+L     G F     + +SL++L L +N  K     + DKL EL  L L+NN  
Sbjct: 138 LSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 392 TGSFPPEI-GNLSKLENLFLFDN 413
               P     +L KL+ L L +N
Sbjct: 194 K-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 63/220 (28%), Positives = 93/220 (42%), Gaps = 22/220 (10%)

Query: 60  TCSDDQKHVVGLNLSSSGLS---GSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNL 116
           +C++++  V   + SS  L+    +I          + LDL SN L+ L      +L  L
Sbjct: 13  SCNNNKNSV---DCSSKKLTAIPSNIP------ADTKKLDLQSNKLSSLPSKAFHRLTKL 63

Query: 117 RILLLYSNSFSGKIPPEIGF--LNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQ 173
           R+L L  N     +P  I F  L  L+ L + DN L   +P  +   L  L EL +   Q
Sbjct: 64  RLLYLNDNKLQ-TLPAGI-FKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ 120

Query: 174 LNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVL 232
           L  S+P  +  +L  LT L L  N+L  L          L++    NN L+     +   
Sbjct: 121 LK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179

Query: 233 LKSLQILNLANNSLSGSIPVEL-SHLFNLRYLNLLGNIFD 271
           L  L+ L L NN L   +P      L  L+ L L  N +D
Sbjct: 180 LTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 50/159 (31%), Positives = 67/159 (42%), Gaps = 9/159 (5%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSG 728
           +LDL SN  +          +KL  L L  N L   +P  I   L  L  L +  N L  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 729 NIPSTI-QQCKKLYELRLSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSL-GS 785
            +P  +  Q   L ELRL  N    S+P  +   LT+L   L L  N     +P  +   
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLT-YLSLGYNELQ-SLPKGVFDK 155

Query: 786 LLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           L  L+ L +  NQL+     +  KLT L  L L NN L+
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 14/160 (8%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSG 728
            +D SS      +P+ I   +   KL L+ N LS  +P +    LT L +L L  N L  
Sbjct: 20  SVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ- 74

Query: 729 NIPSTI-QQCKKLYELRLSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSL-GS 785
            +P+ I ++ K L  L +++N    ++P  +  +L  L   L L +N     +PP +  S
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAE-LRLDRNQLK-SLPPRVFDS 131

Query: 786 LLKLERLNISYNQLQGQVPASL-GKLTSLHVLNLSNNHLQ 824
           L KL  L++ YN+LQ  +P  +  KLTSL  L L NN L+
Sbjct: 132 LTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 57/259 (22%), Positives = 92/259 (35%), Gaps = 60/259 (23%)

Query: 567 TGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLS 626
           + +N+  ++D ++   +  IPS +    +  +L L  N L+      F +LT+L  L   
Sbjct: 13  SCNNNKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY-- 67

Query: 627 FNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI 686
                                 L++N+L                  L +  F        
Sbjct: 68  ----------------------LNDNKLQ----------------TLPAGIFKELK---- 85

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTI-QQCKKLYELR 744
                L  L +  N L   +P  +   L  L  L L RN L  ++P  +     KL  L 
Sbjct: 86  ----NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLS 139

Query: 745 LSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSL-GSLLKLERLNISYNQLQGQ 802
           L  N    S+P  +  +LT L+  L L  N     +P      L +L+ L +  NQL+  
Sbjct: 140 LGYNELQ-SLPKGVFDKLTSLK-ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRV 196

Query: 803 VPASLGKLTSLHVLNLSNN 821
              +   L  L +L L  N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 40/211 (18%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDN 413
           +  ++LDL  N       ++  +L +L  L LN+N    + P  I   L  LE L++ DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 414 MITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETM- 471
            +   +P+ +  +L  L+ + L  NQ+                          S+P  + 
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-------------------------SLPPRVF 129

Query: 472 GKLKNLVILQLRQNDLSGPIPA----SLGYCKRLQQIALADNKLSGSVPLTFRFLSELYL 527
             L  L  L L  N+L   +P      L     L+++ L +N+L       F  L+EL  
Sbjct: 130 DSLTKLTYLSLGYNELQS-LPKGVFDKLT---SLKELRLYNNQLKRVPEGAFDKLTELKT 185

Query: 528 ITLYNNSFKGPLPPSLF-QLKKLRIINFSHN 557
           + L NN  K  +P   F  L+KL+++    N
Sbjct: 186 LKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 9/188 (4%)

Query: 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-GNCSKLLKLSLRGNNL 702
              L L    L         +L  I  + +S +     + +    N SK+  + +R    
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 703 SGKIPPEI-GNLTALNVLNLQRNSLSGNIP--STIQQCKKLYELRLSENFFTGSIPAD-L 758
              I P+    L  L  L +    L    P  + +      + L +++N +  SIP +  
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASL--GKLTSLHVL 816
             L    + L L  N F+  +     +  KL+ + ++ N+    +      G  +   +L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 817 NLSNNHLQ 824
           ++S   + 
Sbjct: 211 DVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 35/235 (14%)

Query: 89  LTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIG 146
             S +TL L    L  +       L N+  + +  +    ++     F  L+K+  + I 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIR 88

Query: 147 DNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIP--VEIGNLKHLTSLDLQMNKLSGLIP 203
           +      I P     L  L+ L I    L    P   ++ +      L++  N     IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 204 EAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYL 263
                           N  +G       L      L L NN  + S+     +   L  +
Sbjct: 148 V---------------NAFQG-------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAV 184

Query: 264 NLLGNIFDGEIPSEL--NKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316
            L  N +   I  +      +    LD+S+ +++   +L +  L++L+ L+  + 
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT---ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 41/238 (17%), Positives = 88/238 (36%), Gaps = 21/238 (8%)

Query: 209 CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLG 267
           C + + F  +   ++  IPS   L  S Q L L    L  +IP    S+L N+  + +  
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPS---LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSI 64

Query: 268 NIFDGEIPSEL-NKLAQLEELDLSKNNLSGSISLLN----TQLKNLETLVLSDNAFTGSI 322
           ++   ++ S     L+++  +++       +++ ++     +L  L+ L + +       
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTR---NLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 323 PIKFCLNNSSLQQLILARNKLSGEFPLELLR--CSSLQQLDLSDNSFKGELPRSLDKLEE 380
            +    +      L +  N      P+   +  C+    L L +N F   +        +
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTK 180

Query: 381 LTDLLLNNNSFTGSFPPEI--GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLY 435
           L  + LN N +      +   G  S    L +    +T  +P +    L+ L A   +
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 38/238 (15%)

Query: 521 FLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTN 579
                  + L     +  +P   F  L  +  I  S +             +L  L+  +
Sbjct: 29  LPPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSID------------VTLQQLE--S 73

Query: 580 NSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNSFTG-QIAPQ 637
           +SF             ++ + + +      I  +   +L  L FL +            +
Sbjct: 74  HSFYN--------LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQ----EIGELDLSSNNFNGTVPAEIGNCSKLL 693
           +        L +++N    +IP  + + Q    E   L L +N F  +V     N +KL 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182

Query: 694 KLSLRGNNLSGKIPPEI--GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENF 749
            + L  N     I  +   G  +  ++L++ + S++  +PS     + L EL     +
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 12/208 (5%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDN 413
            S Q L L +   +     +   L  ++ + ++ +            NLSK+ ++ + + 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 414 MITGKIPVEI-GKLQTLSAIYLYDNQMSGSIP--RELTNCSGLTEIDFFGNHFSGSIPET 470
                I  +   +L  L  + +++  +    P   ++ +      ++   N +  SIP  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 471 M--GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP-LTFRFL-SELY 526
              G     + L+L  N  +  +        +L  + L  NK    +    F  + S   
Sbjct: 150 AFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 527 LITLYNNSFKGPLPPSLFQ-LKKLRIIN 553
           L+ +   S    LP    + LK+L   N
Sbjct: 209 LLDVSQTSVTA-LPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 719 LNLQRNSLSG--NIPSTIQQCKKLYELRLSENFFTGSIPAD-LGRLTELQVILDLSKNNF 775
             +    +    ++P + Q       L+L E     +IP+     L  +   + +S +  
Sbjct: 16  FRVTCKDIQRIPSLPPSTQ------TLKLIETHLR-TIPSHAFSNLPNIS-RIYVSIDVT 67

Query: 776 SGEIPP-SLGSLLKLERLNISYNQLQGQVPAS-LGKLTSLHVLNLSNNHLQ 824
             ++   S  +L K+  + I   +    +    L +L  L  L + N  L+
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 15/157 (9%)

Query: 694 KLSLRGNNLSGKIPPEI--GNLTALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFF 750
            L L  NNLS ++  E     LT L+ L L  N L+  I S        L  L LS N  
Sbjct: 43  LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100

Query: 751 TGSIPAD-LGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVPA--- 805
             ++       L  L+ +L L  N+    +   +   + +L++L +S NQ+  + P    
Sbjct: 101 H-TLDEFLFSDLQALE-VLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 806 -SLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFLG 841
               KL  L +L+LS+N L+          P     G
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 15/183 (8%)

Query: 91  SLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIGDN 148
           +   L  S   L   +P  L       +L L  N+ S ++  E     L  L  L +  N
Sbjct: 19  ASNILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN 74

Query: 149 LLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAI 206
            L   I       +  LR L ++   L+ ++   +  +L+ L  L L  N +  +   A 
Sbjct: 75  HL-NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 207 HGCEELQKFAASNNMLEGTIP----SSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRY 262
               +LQK   S N +    P         L  L +L+L++N L      +L  L     
Sbjct: 133 EDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 263 LNL 265
             L
Sbjct: 192 NGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 7e-13
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 71  LNLSSSGLSGSISRD--FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSG 128
           L+LS + LS  +  +     LT+L +L LS N L  +       + NLR L L SN    
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 129 KIPPEIGF--LNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI--- 182
            +   + F  L  L+VL + +N +   +  +   ++ +L++L ++  Q++   PVE+   
Sbjct: 102 TLDEFL-FSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKD 158

Query: 183 -GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQK 214
              L  L  LDL  NKL  L    +       K
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 49/203 (24%)

Query: 225 TIPSSIVLLKSLQILNLANNSLSGSIPVE--LSHLFNLRYLNLLGN-IFDGEIPSE-LNK 280
            +P S+       +L+L++N+LS  +  E   + L NL  L L  N +    I SE    
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVP 86

Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
           +  L  LDLS N+L                  L +  F+            +L+ L+L  
Sbjct: 87  VPNLRYLDLSSNHLH----------------TLDEFLFSD---------LQALEVLLLYN 121

Query: 341 NKLS----GEFPLELLRCSSLQQLDLSDNSFKGELP----RSLDKLEELTDLLLNNNSFT 392
           N +       F       + LQ+L LS N      P    +  +KL +L  L L++N   
Sbjct: 122 NHIVVVDRNAFE----DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 393 GSFPPEIGNLSKL--ENLFLFDN 413
                ++  L       L+L +N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 670 ELDLSSNNFNGTVPAEI--GNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSL 726
            LDLS NN    + AE      + L  L L  N+L+  I  E    +  L  L+L  N L
Sbjct: 43  LLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL 100

Query: 727 SGNIPS-TIQQCKKLYELRLSENFFTGSIPAD-LGRLTELQVILDLSKNNFSGEIPP--- 781
              +        + L  L L  N     +  +    + +LQ  L LS+N  S   P    
Sbjct: 101 H-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ-KLYLSQNQIS-RFPVELI 156

Query: 782 -SLGSLLKLERLNISYNQLQGQVPASLGKLTSL--HVLNLSNNHLQ 824
                L KL  L++S N+L+      L KL +   + L L NN L+
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 35/188 (18%)

Query: 501 LQQIALADNKLSGSVP-LTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNK 558
              + L+ N LS      T   L+ L+ + L +N     +    F  +  LR ++ S N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNH 99

Query: 559 FSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE-FGKL 617
                        L  LD     FS          + L  L L +NH+   +    F  +
Sbjct: 100 -------------LHTLD--EFLFSD--------LQALEVLLLYNNHIV-VVDRNAFEDM 135

Query: 618 TELNFLDLSFNSFTGQIAPQ----LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGE--L 671
            +L  L LS N  + +   +     +K  KL  L LS+N+L       L  L    +  L
Sbjct: 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

Query: 672 DLSSNNFN 679
            L +N   
Sbjct: 195 YLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 15/164 (9%)

Query: 476 NLVILQLRQNDLSG-PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNS 534
              +L L  N+LS      +      L  + L+ N L+      F  +  L  + L +N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 535 FKGPLPPSLFQ-LKKLRIINFSHNKFS----GSIYPLTGSNSLTALDLTNNSFSGPIPSE 589
               L   LF  L+ L ++   +N        +   +     L  L L+ N  S   P E
Sbjct: 100 LHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA---QLQKLYLSQNQISR-FPVE 154

Query: 590 ----LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629
                     L  L L+ N L     ++  KL       L  ++
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 12/174 (6%)

Query: 442 SIPRELTNCSGLTEIDFFGNHFSGSIPETM-GKLKNLVILQLRQNDLSGPIPASLGYCKR 500
           ++P+ L   S    +D   N+ S    E    +L NL  L L  N L+     +      
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKF 559
           L+ + L+ N L       F  L  L ++ LYNN     +  + F+ + +L+ +  S N+ 
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQI 148

Query: 560 S----GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN 609
           S      I        L  LDL++N     +P      + L        +L  N
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLT--DLQKLPAWVKNGLYLHNN 199

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 54/302 (17%), Positives = 99/302 (32%), Gaps = 56/302 (18%)

Query: 565 PLTGSNSLTALDLTNNSFSGP----IPSELAMSRNLSRLRLAHNHLTGNIPSEFG----- 615
            L   +S+  + L+ N+        +   +A  ++L     +    TG +  E       
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRL 85

Query: 616 ------KLTELNFLDLSFNSFTGQ----IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSL 665
                 K  +L+ + LS N+F       +   LSK   L HL L NN L           
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---------- 135

Query: 666 QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK----IPPEIGNLTALNVLNL 721
                  ++       V  +  N   L  +    N L             +   L+ + +
Sbjct: 136 -PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 722 QRNSL-----SGNIPSTIQQCKKLYELRLSENFFTG----SIPADLGRLTELQVILDLSK 772
            +N +        +   +  C++L  L L +N FT     ++   L     L+  L L+ 
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE-LGLND 253

Query: 773 NNFSGEIPPSLGSLLK------LERLNISYNQLQGQVPASLG-----KLTSLHVLNLSNN 821
              S     ++           L+ L + YN+++     +L      K+  L  L L+ N
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 822 HL 823
             
Sbjct: 314 RF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 62/346 (17%), Positives = 112/346 (32%), Gaps = 78/346 (22%)

Query: 91  SLETLDLSSNSLTG----LIPSELGQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQV 142
           S+E   L  +++T      + + L +  +++ ++L  N+   +    +   I     L++
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 143 LRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLI 202
               D           G + +    A+        +   +     L ++ L  N      
Sbjct: 65  AEFSDI--------FTGRVKDEIPEALR------LLLQALLKCPKLHTVRLSDNAFGP-- 108

Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS-------------GS 249
                  E L  F + +                L+ L L NN L               +
Sbjct: 109 ----TAQEPLIDFLSKH--------------TPLEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 250 IPVELSHLFNLRYLNLLGNIFDGE----IPSELNKLAQLEELDLSKNNLS--GSISLLNT 303
           +  +  +   LR +    N  +                L  + + +N +   G   LL  
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 304 QLK---NLETLVLSDNAFT--GSIPIKFCL-NNSSLQQLILARNKLSGE------FPLEL 351
            L     L+ L L DN FT  GS  +   L +  +L++L L    LS             
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 352 LRCSSLQQLDLSDNSFKGE----LPRSL-DKLEELTDLLLNNNSFT 392
           L    LQ L L  N  + +    L   + +K+ +L  L LN N F+
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 51/313 (16%), Positives = 100/313 (31%), Gaps = 58/313 (18%)

Query: 234 KSLQILNLANNSLSG----SIPVELSHLFNLRYLNLLGNIFDGE----IPSELNKLAQLE 285
            S++  +L  ++++     S+   L    +++ + L GN    E    +   +     LE
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 286 ELDLSKNNL--------SGSISLLN--TQLKNLETLVLSDNAFT--GSIPIKFCL-NNSS 332
             + S                 LL    +   L T+ LSDNAF      P+   L  ++ 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 333 LQQLILARNKLSGE-------------FPLELLRCSSLQQLDLSDNSFKGE----LPRSL 375
           L+ L L  N L  +                +      L+ +    N  +        ++ 
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 376 DKLEELTDLLLNNNSFT-----GSFPPEIGNLSKLENLFLFDNMITGK----IPVEIGKL 426
                L  + +  N              +    +L+ L L DN  T      + + +   
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 427 QTLSAIYLYDNQMSG----SIPRELTNCS--GLTEIDFFGNHFSG----SIPETMG-KLK 475
             L  + L D  +S     ++    +     GL  +    N        ++   +  K+ 
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303

Query: 476 NLVILQLRQNDLS 488
           +L+ L+L  N  S
Sbjct: 304 DLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 46/288 (15%), Positives = 80/288 (27%), Gaps = 69/288 (23%)

Query: 571 SLTALDLTNNSFSG----PIPSELAMSRNLSRLRLAHNHLTGN----IPSEFGKLTELNF 622
           S+    L  ++ +      + + L    ++  + L+ N +       +        +L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 623 LDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTV 682
            + S                 L   LL   +L                + LS N F  T 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH--------------TVRLSDNAFGPTA 110

Query: 683 PAEIG----NCSKLLKLSLRGNNLS-------------GKIPPEIGNLTALNVLNLQRNS 725
              +       + L  L L  N L                +  +  N   L  +   RN 
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 726 LSGN----IPSTIQQCKKLYELRLSENFFT-----GSIPADLGRLTELQVILDLSKNNFS 776
           L          T Q  + L+ +++ +N          +   L    EL+V LDL  N F+
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV-LDLQDNTFT 229

Query: 777 GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
                +L   LK                       +L  L L++  L 
Sbjct: 230 HLGSSALAIALK--------------------SWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 54/326 (16%), Positives = 87/326 (26%), Gaps = 64/326 (19%)

Query: 428 TLSAIYLYDNQMSG----SIPRELTNCSGLTEIDFFGNHFSG----SIPETMGKLKNLVI 479
           ++    L  + ++     S+   L     + EI   GN         + E +   K+L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 480 LQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF--KG 537
            +                 + L Q AL               L  + L    +N+F    
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQ-ALLKCP----------KLHTVRL---SDNAFGPTA 110

Query: 538 --PLPPSLFQLKKLRIINFSHNKFS--------------GSIYPLTGSNSLTALDLTNNS 581
             PL   L +   L  +   +N                         +  L ++    N 
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 582 FSGP----IPSELAMSRNLSRLRLAHNHLT-----GNIPSEFGKLTELNFLDLSFNSFTG 632
                           R L  +++  N +        +        EL  LDL  N+FT 
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 633 Q----IAPQLSKCAKLAHLLLSNNELT--GTIPF----WLGSLQEIGELDLSSNNFNGTV 682
                +A  L     L  L L++  L+  G               +  L L  N      
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 683 PAEIG-----NCSKLLKLSLRGNNLS 703
              +          LL L L GN  S
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 47/267 (17%), Positives = 88/267 (32%), Gaps = 42/267 (15%)

Query: 81  SISRDFLNLTSLETLDLSSNSLTG----LIPSELGQLQNLRILLLYSNSFSGKIPPEIGF 136
            + +  L    L T+ LS N+        +   L +   L  L L++N            
Sbjct: 85  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-----PQA- 138

Query: 137 LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG----NLKHLTSLD 192
                  +I   L    +     N   LR +     +L      E      + + L ++ 
Sbjct: 139 -----GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193

Query: 193 LQMNKL-----SGLIPEAIHGCEELQKFAASNNML--EGT--IPSSIVLLKSLQILNLAN 243
           +  N +       L+ E +  C+EL+     +N     G+  +  ++    +L+ L L +
Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253

Query: 244 NSLSG----SIPVELSHLFN--LRYLNLLGNIFDGEIPSEL-----NKLAQLEELDLSKN 292
             LS     ++    S L N  L+ L L  N  + +    L      K+  L  L+L+ N
Sbjct: 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313

Query: 293 NLS---GSISLLNTQLKNLETLVLSDN 316
             S     +  +           L + 
Sbjct: 314 RFSEEDDVVDEIREVFSTRGRGELDEL 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 1e-12
 Identities = 107/650 (16%), Positives = 185/650 (28%), Gaps = 209/650 (32%)

Query: 21  GGISTDSFWLL-RIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLS 79
             +  +  +L+  IK E   P+ +   +              +D+Q              
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYI------EQRDRLYNDNQVFA----------K 128

Query: 80  GSISR--DFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFL 137
            ++SR   +L L                    L +L+  + +L+     SGK        
Sbjct: 129 YNVSRLQPYLKLRQA-----------------LLELRPAKNVLIDGVLGSGK-------- 163

Query: 138 NKLQVL------------RIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
                +            ++   + W               L +  C    ++      L
Sbjct: 164 ---TWVALDVCLSYKVQCKMDFKIFW---------------LNLKNCNSPETV------L 199

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
           + L  L  Q++      P      +               I   I  +++          
Sbjct: 200 EMLQKLLYQID------PNWTSRSDHSS-----------NIKLRIHSIQA---------- 232

Query: 246 LSGSIPVELSHLFNLR-YLN---LLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLL 301
                  EL  L   + Y N   +L N+ + +              +L          LL
Sbjct: 233 -------ELRRLLKSKPYENCLLVLLNVQNAKA---------WNAFNL------SCKILL 270

Query: 302 NTQLKNLETLVLSDNAFTGSIPIKFCLNN----SSLQQLILARNKLSGEFPLELLRCSSL 357
            T+ K + T  LS  A T  I +               L+   +    + P E+L  +  
Sbjct: 271 TTRFKQV-TDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 358 QQLDLSDNSFKGELPR-------SLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFL 410
            +L +   S +  L         + DKL  + +  LN        P E   +   + L +
Sbjct: 329 -RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-----PAEYRKM--FDRLSV 380

Query: 411 F-DNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN-C--SGLTEIDFFGNHFSGS 466
           F  +     IP        LS I+     +  S    + N      L E        + S
Sbjct: 381 FPPSA---HIP-----TILLSLIW---FDVIKSDVMVVVNKLHKYSLVEKQ--PKESTIS 427

Query: 467 IP----ETMGKLKNLVIL------------QLRQNDLSGP-----IPASLGYCKRLQQIA 505
           IP    E   KL+N   L                +DL  P       + +G+   L+ I 
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--HLKNIE 485

Query: 506 LADN-KLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLR-IINFSHNKFSGSI 563
             +   L   V L FRFL +         +  G +  +L QLK  +  I  +  K+   +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 564 YPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE 613
                        + +  F   I   L  S+    LR+A       I  E
Sbjct: 546 N-----------AILD--FLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 3e-11
 Identities = 93/611 (15%), Positives = 166/611 (27%), Gaps = 204/611 (33%)

Query: 85  DFL-NLTSLETLDLSSNSLTG-------LIPSELGQLQNLRILLLYSNS------FSGKI 130
            F+ N    +  D+  + L+        +    +     L   LL              +
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 131 PPEIGFL-NKLQVLRIGD-----------NLLWGEIPPHIGNLTELRELAIAYCQLNGSI 178
                FL + ++  +              + L+ +                 + + N S 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--------------FAKYNVSR 133

Query: 179 PVEIGNLKHLTSLDLQMNKLSGLIPE---AIHGCEELQKFAASNNML-EGTIPSSIVLLK 234
                 L+           L  L P     I G            +L  G         K
Sbjct: 134 LQPYLKLR---------QALLELRPAKNVLIDG------------VLGSG---------K 163

Query: 235 SLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIF-DGEIPSELNKL-AQLEELDLSKN 292
           +     +A +    S  V+    F + +LNL  N      +   L KL  Q++    S++
Sbjct: 164 TW----VALDVCL-SYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 293 NLSGSISL----LNTQLKNLET--------LVLSD-------NAFTGSIPIKFCLNNSSL 333
           + S +I L    +  +L+ L          LVL +       NAF  S     C      
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-----C------ 266

Query: 334 QQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG 393
           + L+  R K                                     ++TD L    +   
Sbjct: 267 KILLTTRFK-------------------------------------QVTDFLSAATTTHI 289

Query: 394 SFPPEIGNLSKLENLFLFD---NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR----E 446
           S       L+  E   L     +     +P E+        + +    +   +      +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWK 348

Query: 447 LTNCSGLTE-IDFFGNHFSGSIPETMGKL-KNLVILQLRQNDLSGPIPASLGYCKRLQQI 504
             NC  LT  I+   N      P    K+   L +           IP        L   
Sbjct: 349 HVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFP---PSA--HIPT-----ILLS-- 393

Query: 505 ALADNKLSGSVPLTFRFLSELY---LITLYNNSFKGPLPPSLFQLKKLRIINFS--HNKF 559
            +  + +   V +    +++L+   L+          +P S++   K+++ N    H   
Sbjct: 394 LIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYALHRSI 449

Query: 560 SGSIYPLTG---SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGK 616
               Y +     S+ L    L    +S                 + H HL      E   
Sbjct: 450 VDH-YNIPKTFDSDDLIPPYLDQYFYS----------------HIGH-HLKNIEHPERMT 491

Query: 617 LTELNFLDLSF 627
           L  + FLD  F
Sbjct: 492 LFRMVFLDFRF 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 6e-06
 Identities = 45/297 (15%), Positives = 81/297 (27%), Gaps = 90/297 (30%)

Query: 641 CAK--LAHLLLSNNELTGTIP---FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL 695
             K  +A  +  + ++   +    FWL                       + NC+    +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLN----------------------LKNCNSPETV 198

Query: 696 SLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP 755
                 L  +I P   N T        R+  S NI   I   +      L     +    
Sbjct: 199 LEMLQKLLYQIDP---NWT-------SRSDHSSNIKLRIHSIQA----ELRRLLKSKPYE 244

Query: 756 ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQL----QGQVPASLGKLT 811
             L       ++L    N  + +              N+S   L      QV   L   T
Sbjct: 245 NCL-------LVLL---NVQNAKA---------WNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 812 SLHVLNLSNNHLQGQLPLTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKRLSNTAVVV 871
           + H+   S +H    L        L  +L              +L  + +   +N   + 
Sbjct: 286 TTHI---SLDHHSMTLTPDEVKSLLLKYLD---------CRPQDLPREVLT--TNPRRLS 331

Query: 872 IITAILFTSAVICLIMLYIMLRIWLNWRQVSISNSDNGNNGS-DQQKREEEKLVYED 927
           II              +   L  W NW+ V+          S +  +  E + +++ 
Sbjct: 332 IIAE-----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 41/240 (17%)

Query: 93  ETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWG 152
           ET+ +S+       P             L   S +     +   LN +  +   ++ +  
Sbjct: 1   ETITVSTPIKQI-FPD--DAFAETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDI-- 53

Query: 153 EIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEEL 212
           +    I  L  +R LA+   +L+  I   +  L +LT L L  N+L  L          L
Sbjct: 54  KSVQGIQYLPNVRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111

Query: 213 QKFAASNNMLEGTIPSSIV-LLKSLQILNLANNSLSGSIPVEL-SHLFNLRYLNLLGN-- 268
           ++     N L+ ++P  +   L +L  LNLA+N L  S+P  +   L NL  L+L  N  
Sbjct: 112 KELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169

Query: 269 ------IFDGEIPSELNKLAQLEELDLSKNNLSGSI------SLLNTQLKNLETLVLSDN 316
                 +FD        KL QL++L L +N L  S+            L +L+ + L DN
Sbjct: 170 QSLPEGVFD--------KLTQLKDLRLYQNQLK-SVPDGVFDR-----LTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 21/220 (9%)

Query: 225 TIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQL 284
             P            NL   S++     + + L ++  +    +         +  L  +
Sbjct: 12  IFPDDA--FAETIKANLKKKSVT-DAVTQ-NELNSIDQIIANNSDIKSVQG--IQYLPNV 65

Query: 285 EELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL- 343
             L L  N L   IS L  +L NL  L+L+ N    S+P       ++L++L+L  N+L 
Sbjct: 66  RYLALGGNKLH-DISALK-ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ 122

Query: 344 ---SGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI- 399
               G F     + ++L  L+L+ N  +       DKL  LT+L L+ N    S P  + 
Sbjct: 123 SLPDGVFD----KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177

Query: 400 GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQ 438
             L++L++L L+ N +   +P  +  +L +L  I+L+DN 
Sbjct: 178 DKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 47/233 (20%)

Query: 309 ETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFK 368
               L   + T     +  LN  S+ Q+I   + +     ++ L   +++ L L  N   
Sbjct: 22  IKANLKKKSVT-DAVTQNELN--SIDQIIANNSDIKSVQGIQYL--PNVRYLALGGNKLH 76

Query: 369 GELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKL 426
            ++  +L +L  LT L+L  N    S P  +   L+ L+ L L +N +   +P  +  KL
Sbjct: 77  -DIS-ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132

Query: 427 QTLSAIYLYDNQMSGSIPR----ELTNCSGLTEIDFFGNHFSGSIPETM-GKLKNLVILQ 481
             L+ + L  NQ+  S+P+    +LTN   LTE+D   N    S+PE +  KL  L  L+
Sbjct: 133 TNLTYLNLAHNQLQ-SLPKGVFDKLTN---LTELDLSYNQLQ-SLPEGVFDKLTQLKDLR 187

Query: 482 LRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNN 533
           L QN L                          SVP   F  L+ L  I L++N
Sbjct: 188 LYQNQLK-------------------------SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 19/184 (10%)

Query: 647 LLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
             L    +T  +      L  I ++  ++++   +V   I     +  L+L GN L    
Sbjct: 24  ANLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH--- 76

Query: 707 PPEIG---NLTALNVLNLQRNSLSGNIPSTI-QQCKKLYELRLSENFFTGSIPADL-GRL 761
             +I     LT L  L L  N L  ++P+ +  +   L EL L EN    S+P  +  +L
Sbjct: 77  --DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132

Query: 762 TELQVILDLSKNNFSGEIPPSL-GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN 820
           T L   L+L+ N     +P  +   L  L  L++SYNQLQ        KLT L  L L  
Sbjct: 133 TNLTY-LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190

Query: 821 NHLQ 824
           N L+
Sbjct: 191 NQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 86  FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVLR 144
              L ++  L L  N L  +  S L +L NL  L+L  N     +P  +   L  L+ L 
Sbjct: 59  IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115

Query: 145 IGDNLLWGEIPPHIGN-LTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLI 202
           + +N L   +P  + + LT L  L +A+ QL  S+P  +   L +LT LDL  N+L  L 
Sbjct: 116 LVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLP 173

Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSIV-LLKSLQILNLANN 244
                   +L+      N L+ ++P  +   L SLQ + L +N
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 40/178 (22%), Positives = 60/178 (33%), Gaps = 11/178 (6%)

Query: 552 INFSHNKFSGSIYPLTGSNSLTALDLTNNSFS--GPIPSELAMSRNLSRLRLAHNHLTGN 609
            N      +         NS+  +   N+       I        N+  L L  N L  +
Sbjct: 24  ANLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-D 77

Query: 610 IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG 669
           I +   +LT L +L L+ N           K   L  L+L  N+L          L  + 
Sbjct: 78  ISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSL 726
            L+L+ N             + L +L L  N L   +P  +   LT L  L L +N L
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 694 KLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752
           ++ L  N +   IPP        L  ++L  N +S   P   Q  + L  L L  N  T 
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 753 SIPADL-GRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVPASLGKL 810
            +P  L   L  LQ +L L+ N  +  +   +   L  L  L++  N+LQ     +   L
Sbjct: 94  ELPKSLFEGLFSLQ-LLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 811 TSLHVLNLSNN 821
            ++  ++L+ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 11/136 (8%)

Query: 307 NLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS----GEFPLELLRCSSLQQLDL 362
            +  + L  N     IP         L+++ L+ N++S      F        SL  L L
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAF----QGLRSLNSLVL 87

Query: 363 SDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIPV 421
             N          + L  L  LLLN N        +   +L  L  L L+DN +      
Sbjct: 88  YGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 422 EIGKLQTLSAIYLYDN 437
               L+ +  ++L  N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 718 VLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL-GRLTELQVILDLSKNNFS 776
            + L++N++    P      KKL  + LS N  +  +  D    L  L   L L  N  +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLN-SLVLYGNKIT 93

Query: 777 GEIPPSL-GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
            E+P SL   L  L+ L ++ N++      +   L +L++L+L +N LQ     TFS   
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
            ++ ++ L +N +    P        L+++DLS+N      P +   L  L  L+L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 391 FTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRE-L 447
            T   P  +   L  L+ L L  N I   + V+    L  L+ + LYDN++  +I +   
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148

Query: 448 TNCSGLTEIDFFGNHF 463
           +    +  +    N F
Sbjct: 149 SPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIGD 147
            ++  + L  N++  + P      + LR + L +N  S ++ P+  F  L  L  L +  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDA-FQGLRSLNSLVLYG 89

Query: 148 NLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEA 205
           N +  E+P  +   L  L+ L +   ++N  + V+   +L +L  L L  NKL  +    
Sbjct: 90  NKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 206 IHGCEELQKFAASNN 220
                 +Q    + N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 11/155 (7%)

Query: 94  TLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIGDNLLW 151
            +D     LT  IP+ L   + +  + L  N+    IPP   F    KL+ + + +N + 
Sbjct: 15  IVDCRGKGLTE-IPTNL--PETITEIRLEQNTIK-VIPPGA-FSPYKKLRRIDLSNNQI- 68

Query: 152 GEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHGC 209
            E+ P     L  L  L +   ++   +P  +   L  L  L L  NK++ L  +A    
Sbjct: 69  SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127

Query: 210 EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
             L   +  +N L+     +   L+++Q ++LA N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           + L  + +       F     L  +DLS+N ++ L P     L++L  L+LY N  + ++
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 131 PPEIGF--LNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLK 186
           P  + F  L  LQ+L +  N +   +      +L  L  L++   +L  +I       L+
Sbjct: 96  PKSL-FEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLR 152

Query: 187 HLTSLDLQMN 196
            + ++ L  N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 12/137 (8%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDN 413
            ++ ++ L  N+ K   P +    ++L  + L+NN  +    P+    L  L +L L+ N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 414 MITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRE----LTNCSGLTEIDFFGNHFSGSIP 468
            IT ++P  +   L +L  + L  N+++  +  +    L N   L  +  + N       
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHN---LNLLSLYDNKLQTIAK 145

Query: 469 ETMGKLKNLVILQLRQN 485
            T   L+ +  + L QN
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 28/164 (17%)

Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
           IP+ L     ++ +RL  N +    P  F    +L  +DLS N  +            L 
Sbjct: 26  IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83

Query: 646 HLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK 705
            L+L  N++T                +L  + F G           L  L L  N ++  
Sbjct: 84  SLVLYGNKIT----------------ELPKSLFEGLF--------SLQLLLLNANKIN-C 118

Query: 706 IPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748
           +  +   +L  LN+L+L  N L      T    + +  + L++N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 51/179 (28%)

Query: 225 TIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN--------IFDGEIPS 276
            IP+++   +++  + L  N++    P   S    LR ++L  N         F G    
Sbjct: 25  EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---- 78

Query: 277 ELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQL 336
               L  L  L L  N ++                 L  + F G           SLQ L
Sbjct: 79  ----LRSLNSLVLYGNKIT----------------ELPKSLFEGL---------FSLQLL 109

Query: 337 ILARNKLS----GEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
           +L  NK++      F        +L  L L DN  +     +   L  +  + L  N F
Sbjct: 110 LLNANKINCLRVDAFQ----DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP-SLGSLL 787
           N+P TI       E+RL +N      P       +L+  +DLS N  S E+ P +   L 
Sbjct: 29  NLPETIT------EIRLEQNTIKVIPPGAFSPYKKLRR-IDLSNNQIS-ELAPDAFQGLR 80

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
            L  L +  N++     +    L SL +L L+ N + 
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
            +  ++L QN +    P +    K+L++I L++N++S   P  F+ L  L  + LY N  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 536 KGPLPPSLFQ-LKKLRIINFSHNKFSGSIYPLTGSN--SLTALDLTNNSFSGPIPSELAM 592
              LP SLF+ L  L+++  + NK +  +      +  +L  L L +N          + 
Sbjct: 93  TE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 593 SRNLSRLRLAHN 604
            R +  + LA N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 29/153 (18%)

Query: 530 LYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPS 588
           L  N+ K  +PP  F   KKLR I+ S+N+             ++ L    ++F G    
Sbjct: 39  LEQNTIKV-IPPGAFSPYKKLRRIDLSNNQ-------------ISEL--APDAFQG---- 78

Query: 589 ELAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNSFTGQIAPQL-SKCAKLAH 646
                R+L+ L L  N +T  +P   F  L  L  L L+ N     +          L  
Sbjct: 79  ----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNL 132

Query: 647 LLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
           L L +N+L          L+ I  + L+ N F 
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 34/135 (25%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNKF- 559
            +I L  N +    P  F    +L  I L NN     L P  F  L+ L  +    NK  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT 93

Query: 560 ---SGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS-RNLSRLRLAHNHLTGNIPSEFG 615
                    L    SL  L L  N  +  +  +      NL+ L L  N L       F 
Sbjct: 94  ELPKSLFEGLF---SLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 616 KLTELNFLDLSFNSF 630
            L  +  + L+ N F
Sbjct: 150 PLRAIQTMHLAQNPF 164

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 11/148 (7%)

Query: 681 TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTI-QQCKK 739
           +VP+ I   ++  KL L+   L+         LT L  LNL  N L   + + +     +
Sbjct: 28  SVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 740 LYELRLSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSL-GSLLKLERLNISYN 797
           L  L L+ N    S+P  +   LT+L   L L  N     +P  +   L KL+ L ++ N
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLD-KLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141

Query: 798 QLQGQVPASL-GKLTSLHVLNLSNNHLQ 824
           QLQ  +PA    KLT+L  L+LS N LQ
Sbjct: 142 QLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 9/156 (5%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSG 728
           +LDL S        A     +KL  L+L  N L   +   +  +LT L  L L  N L+ 
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96

Query: 729 NIPSTI-QQCKKLYELRLSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSL-GS 785
           ++P  +     +L +L L  N    S+P+ +  RLT+L+  L L+ N     IP      
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK-ELRLNTNQLQ-SIPAGAFDK 153

Query: 786 LLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
           L  L+ L++S NQLQ     +  +L  L  + L  N
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 27/177 (15%)

Query: 225 TIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN--------IFDGEIPS 276
           ++PS I      + L+L +  L+         L  L +LNL  N        +FD     
Sbjct: 28  SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD---- 81

Query: 277 ELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQL 336
               L +L  L L+ N L+     +   L  L+ L L  N    S+P       + L++L
Sbjct: 82  ----LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL 136

Query: 337 ILARNKLS----GEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN 389
            L  N+L     G F     + ++LQ L LS N  +     + D+L +L  + L  N
Sbjct: 137 RLNTNQLQSIPAGAFD----KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 50/190 (26%), Positives = 75/190 (39%), Gaps = 12/190 (6%)

Query: 58  GVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLR 117
           G TC++ +K V   +     L  S+          E LDL S  L  L  +    L  L 
Sbjct: 9   GCTCNEGKKEV---DCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLT 62

Query: 118 ILLLYSNSFSGKIPPEI-GFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLN 175
            L L  N     +   +   L +L  L + +N L   +P  +  +LT+L +L +   QL 
Sbjct: 63  WLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK 120

Query: 176 GSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLK 234
            S+P  +   L  L  L L  N+L  +   A      LQ  + S N L+     +   L 
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179

Query: 235 SLQILNLANN 244
            LQ + L  N
Sbjct: 180 KLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 44/162 (27%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 309 ETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS----GEFPLELLRCSSLQQLDLSD 364
           E L L       ++        + L  L L  N+L     G F       + L  L L++
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD----DLTELGTLGLAN 92

Query: 365 NSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI 423
           N          D L +L  L L  N    S P  +   L+KL+ L L  N +   IP   
Sbjct: 93  NQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150

Query: 424 -GKLQTLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHF 463
             KL  L  + L  NQ+  S+P         L  I  FGN F
Sbjct: 151 FDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 40/184 (21%)

Query: 358 QQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMIT 416
           ++LDL           +   L +LT L L+ N    +    +  +L++L  L L +N + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 417 GKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETM-GKL 474
             +P+ +   L  L  +YL  NQ+                          S+P  +  +L
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-------------------------SLPSGVFDRL 130

Query: 475 KNLVILQLRQNDLSGPIPA----SLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLIT 529
             L  L+L  N L   IPA     L     LQ ++L+ N+L  SVP   F  L +L  IT
Sbjct: 131 TKLKELRLNTNQLQS-IPAGAFDKLT---NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185

Query: 530 LYNN 533
           L+ N
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 45/161 (27%), Positives = 64/161 (39%), Gaps = 19/161 (11%)

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNKF- 559
           +++ L    L+     TFR L++L  + L  N  +  L   +F  L +L  +  ++N+  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 560 ---SGSIYPLTGSNSLTALDLTNNSFSGPIPS----ELAMSRNLSRLRLAHNHLTGNIPS 612
               G    LT    L  L L  N     +PS     L     L  LRL  N L  +IP+
Sbjct: 97  SLPLGVFDHLT---QLDKLYLGGNQLKS-LPSGVFDRLT---KLKELRLNTNQLQ-SIPA 148

Query: 613 E-FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652
             F KLT L  L LS N           +  KL  + L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 4/153 (2%)

Query: 598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT 657
           +L L    L     + F  LT+L +L+L +N      A       +L  L L+NN+L   
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 658 IPFWLGSLQEIGELDLSSNNFNGTVPAEI-GNCSKLLKLSLRGNNLSGKIPPEI-GNLTA 715
                  L ++ +L L  N    ++P+ +    +KL +L L  N L   IP      LT 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156

Query: 716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748
           L  L+L  N L         +  KL  + L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 307 NLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNS 366
               L L++N FT             L+++  + NK++          S + ++ L+ N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 367 FKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI-G 424
            +    +    LE L  L+L +N  T     +    LS +  L L+DN IT  +      
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFD 150

Query: 425 KLQTLSAIYLYDN 437
            L +LS + L  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 8/132 (6%)

Query: 694 KLSLRGNNLSGKIPPEIG--NLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751
           +L L  N  +  +        L  L  +N   N ++       +    + E+ L+ N   
Sbjct: 36  ELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 752 GSIPADL-GRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNISYNQLQGQVPASLGK 809
            ++   +   L  L+  L L  N  +  +   S   L  +  L++  NQ+    P +   
Sbjct: 95  -NVQHKMFKGLESLK-TLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 810 LTSLHVLNLSNN 821
           L SL  LNL  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query: 54  CSWHGVTCSDDQ---------KHVVGLNLSSSGLSG-SISRDFLNLTSLETLDLSSNSLT 103
           C    V CS+ +         ++   L L+++  +    +  F  L  L  ++ S+N +T
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70

Query: 104 GLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIGDNLLWGEIPPHI-GN 160
            +          +  +LL SN     +  ++ F  L  L+ L +  N +   +       
Sbjct: 71  DIEEGAFEGASGVNEILLTSNRLEN-VQHKM-FKGLESLKTLMLRSNRIT-CVGNDSFIG 127

Query: 161 LTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMN 196
           L+ +R L++   Q+  ++       L  L++L+L  N
Sbjct: 128 LSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 36/183 (19%)

Query: 94  TLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIGDNLLW 151
           T+D S+  L   IP  + Q      L L +N F+  +     F  L +L+ +   +N + 
Sbjct: 15  TVDCSNQKLNK-IPEHIPQ--YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKI- 69

Query: 152 GEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHGC 209
            +I        + + E+ +   +L  ++  ++   L+ L +L L+ N+++ +  ++  G 
Sbjct: 70  TDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG- 127

Query: 210 EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLGN 268
                                  L S+++L+L +N ++ ++       L +L  LNLL N
Sbjct: 128 -----------------------LSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

Query: 269 IFD 271
            F+
Sbjct: 164 PFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 32/139 (23%)

Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSI-VLLKSLQILNLA 242
            L  L  ++   NK++ +   A  G   + +   ++N LE  +   +   L+SL+ L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 243 NNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
           +N ++  +  +                F          L+ +  L L  N ++   ++  
Sbjct: 114 SNRIT-CVGND---------------SFI--------GLSSVRLLSLYDNQIT---TVAP 146

Query: 303 ---TQLKNLETLVLSDNAF 318
                L +L TL L  N F
Sbjct: 147 GAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 4/135 (2%)

Query: 259 NLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNA 317
               L L  N     E      KL QL +++ S N ++            +  ++L+ N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 318 FTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELL-RCSSLQQLDLSDNSFKGELPRSLD 376
              ++  K      SL+ L+L  N+++     +     SS++ L L DN      P + D
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 377 KLEELTDLLLNNNSF 391
            L  L+ L L  N F
Sbjct: 151 TLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPP-SLGSL 786
           +IP          ELRL+ N FT         +L +L+  ++ S N  + +I   +    
Sbjct: 29  HIPQYTA------ELRLNNNEFTVLEATGIFKKLPQLRK-INFSNNKIT-DIEEGAFEGA 80

Query: 787 LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSG 833
             +  + ++ N+L+         L SL  L L +N +      +F G
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 3/132 (2%)

Query: 571 SLTALDLTNNSFSG-PIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS 629
               L L NN F+             L ++  ++N +T      F   + +N + L+ N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 630 FTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI-GN 688
                         L  L+L +N +T         L  +  L L  N    TV       
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 689 CSKLLKLSLRGN 700
              L  L+L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 11/136 (8%)

Query: 406 ENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPR----ELTNCSGLTEIDFFG 460
             L L +N  T      I  KL  L  I   +N+++  I        +    + EI    
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG---VNEILLTS 90

Query: 461 NHFSGSIPETM-GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTF 519
           N    ++   M   L++L  L LR N ++     S      ++ ++L DN+++   P  F
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 520 RFLSELYLITLYNNSF 535
             L  L  + L  N F
Sbjct: 150 DTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 753 SIPADLGRLTELQVILDLSKNNFSGEIPPS--LGSLLKLERLNISYNQLQGQVPASLGKL 810
            IP  + + T     L L+ N F+  +  +     L +L ++N S N++      +    
Sbjct: 25  KIPEHIPQYTA---ELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

Query: 811 TSLHVLNLSNNHLQ 824
           + ++ + L++N L+
Sbjct: 81  SGVNEILLTSNRLE 94

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 11/142 (7%)

Query: 419 IPVEIGKLQTLSAIYLYDNQMSGSIPR-ELTNCSGLTEIDFFGNHFSGSIPE-TMGKLKN 476
           IP    +L       L +N+ +             L +I+F  N  +  I E        
Sbjct: 30  IPQYTAEL------RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82

Query: 477 LVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK 536
           +  + L  N L           + L+ + L  N+++     +F  LS + L++LY+N   
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

Query: 537 GPLPPSLFQ-LKKLRIINFSHN 557
             + P  F  L  L  +N   N
Sbjct: 143 -TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 502 QQIALADNKLSGSVPL-TFRFLSELYLITLYNNSFKGPLPPSLF-QLKKLRIINFSHNKF 559
            ++ L +N+ +       F+ L +L  I   NN     +    F     +  I  + N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRL 93

Query: 560 ----SGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS-RNLSRLRLAHNHLTGNIPSEF 614
                     L    SL  L L +N  +  + ++  +   ++  L L  N +T   P  F
Sbjct: 94  ENVQHKMFKGLE---SLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 615 GKLTELNFLDLSFNSF 630
             L  L+ L+L  N F
Sbjct: 150 DTLHSLSTLNLLANPF 165

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 7/119 (5%)

Query: 276 SELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQ 335
           ++     +  ELDL    +   I  L   L   + +  SDN       +        L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKT 68

Query: 336 LILARNKLSGEFPLELLRCSSLQQLDLSDNSFK--GELPRSLDKLEELTDLLLNNNSFT 392
           L++  N++             L +L L++NS    G+L   L  L+ LT L +  N  T
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPS--ELNKLAQLEELDLS 290
               + L+L    +   I    + L     ++   N    EI        L +L+ L ++
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVN 72

Query: 291 KNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEF--- 347
            N +      L+  L +L  L+L++N+      +    +  SL  L + RN ++ +    
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 132

Query: 348 PLELLRCSSLQQLDLSDNS 366
              + +   ++ LD     
Sbjct: 133 LYVIYKVPQVRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 27/138 (19%)

Query: 684 AEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYEL 743
           A+  N  +  +L LRG  +   I      L   + ++   N +   +       ++L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 744 RLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQV 803
            ++ N            L +L   L L+ N+        LG L  L              
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTE-LILTNNSLV-----ELGDLDPLA------------- 110

Query: 804 PASLGKLTSLHVLNLSNN 821
                 L SL  L +  N
Sbjct: 111 -----SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 329 NNSSLQQLILARNKLSGEFPLELL--RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLL 386
           N    ++L L   K+     +E L         +D SDN  + +L      L  L  LL+
Sbjct: 17  NAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLV 71

Query: 387 NNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVE-IGKLQTLSAIYLYDN 437
           NNN            L  L  L L +N +     ++ +  L++L+ + +  N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 63  DDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLY 122
            +      L+L    +   I      L   + +D S N +  L       L+ L+ LL+ 
Sbjct: 16  TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVN 72

Query: 123 SNSFSGKIPPEIGFLNKLQVLRIGDNLL--WGEIPPHIGNLTELRELAIA---YCQLNGS 177
           +N            L  L  L + +N L   G++ P + +L  L  L I           
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPVTNKKHY 131

Query: 178 IPVEIGNLKHLTSLDLQMNK 197
               I  +  +  LD Q  K
Sbjct: 132 RLYVIYKVPQVRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 150 LWGEIPPHIGNLTE-LRELAIAYCQLNGSIPVE-IGNLKHLTSLDLQMNKLSGLIPEAIH 207
           L G   P I NL   L +        N    ++    L+ L +L +  N++  +      
Sbjct: 26  LRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQ 85

Query: 208 GCEELQKFAASNNMLE--GTIPSSIVLLKSLQILNLANN 244
              +L +   +NN L   G +   +  LKSL  L +  N
Sbjct: 86  ALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 588 SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHL 647
           ++   +     L L    +   I +    L + + +D S N    ++        +L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69

Query: 648 LLSNNELTGTIPFWLGSLQEIGELDLSSNNFN--GTVPAEIGNCSKLLKLSLRGN 700
           L++NN +         +L ++ EL L++N+    G +   + +   L  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 469 ETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
                      L LR   +   I        +   I  +DN++   +   F  L  L  +
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69

Query: 529 TLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS--GSIYPLTGSNSLTALDLTNN 580
            + NN            L  L  +  ++N     G + PL    SLT L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIV-LLKSLQILNLANNSLS 247
             L L  N+++ L P        L++    +N L   +P  +   L  L +L+L  N L+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 248 GSIPVEL-SHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLK 306
             +P  +   L +L+ L +  N    E+P  + +L  L  L L +N L         +L 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 307 NLETLVLSDN 316
           +L    L  N
Sbjct: 160 SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 706 IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL-GRLTEL 764
           +P  I       +L L  N ++   P        L EL L  N    ++P  +   LT+L
Sbjct: 34  VPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 765 QVILDLSKNNFSGEIPPSL-GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHL 823
             +LDL  N  +  +P ++   L+ L+ L +  N+L   +P  + +LT L  L L  N L
Sbjct: 91  T-VLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

Query: 824 Q 824
           +
Sbjct: 148 K 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L L  + ++      F +L +L+ L L SN L  L       L  L +L L +N  +  +
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103

Query: 131 PPEIGF--LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEI-GNLKH 187
           P  + F  L  L+ L +  N L  E+P  I  LT L  LA+   QL  SIP      L  
Sbjct: 104 PSAV-FDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSS 160

Query: 188 LTSLDLQMN 196
           LT   L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 309 ETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL----SGEFPLELLRCSSLQQLDLSD 364
           + L L DN  T  +      +  +L++L L  N+L     G F       + L  LDL  
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFD----SLTQLTVLDLGT 97

Query: 365 NSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIG 424
           N          D+L  L +L +  N  T   P  I  L+ L +L L  N +         
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 425 KLQTLSAIYLYDNQ 438
           +L +L+  YL+ N 
Sbjct: 157 RLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTI-QQCKKL 740
           VPA I   ++   L L  N ++   P    +L  L  L L  N L   +P  +     +L
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 741 YELRLSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQL 799
             L L  N  T  +P+ +  RL  L+  L +  N  + E+P  +  L  L  L +  NQL
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVHLK-ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

Query: 800 QGQVPASLGKLTSLHVLNLSNN 821
           +     +  +L+SL    L  N
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 55/179 (30%)

Query: 358 QQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMIT 416
           Q L L DN      P   D L  L +L L +N    + P  +  +L++L  L L  N +T
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 417 GKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLK 475
             +P  +  +L  L  +++  N+++                          +P  + +L 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-------------------------ELPRGIERLT 135

Query: 476 NLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNN 533
           +L  L L QN L                          S+P   F  LS L    L+ N
Sbjct: 136 HLTHLALDQNQLK-------------------------SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 8/156 (5%)

Query: 91  SLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLL 150
           S  T+D  S      +P+  G   N +IL L+ N  +   P     L  L+ L +G N L
Sbjct: 20  SGTTVDCRSKRHAS-VPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76

Query: 151 WGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHG 208
            G +P  +  +LT+L  L +   QL   +P  +   L HL  L +  NKL+  +P  I  
Sbjct: 77  -GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIER 133

Query: 209 CEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANN 244
              L   A   N L+     +   L SL    L  N
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIGD 147
           T+ + L L  N +T L P     L NL+ L L SN     +P  + F  L +L VL +G 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGV-FDSLTQLTVLDLGT 97

Query: 148 NLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKL 198
           N L   +P  +   L  L+EL +   +L   +P  I  L HLT L L  N+L
Sbjct: 98  NQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 35/136 (25%), Positives = 45/136 (33%), Gaps = 17/136 (12%)

Query: 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG 632
             L L +N  +   P       NL  L L  N L       F  LT+L  LDL  N    
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN---- 98

Query: 633 QIAPQLS--------KCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
               QL+        +   L  L +  N+LT  +P  +  L  +  L L  N        
Sbjct: 99  ----QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153

Query: 685 EIGNCSKLLKLSLRGN 700
                S L    L GN
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 32/127 (25%), Positives = 42/127 (33%), Gaps = 1/127 (0%)

Query: 598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGT 657
            L L  N +T   P  F  L  L  L L  N              +L  L L  N+LT  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 658 IPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALN 717
                  L  + EL +  N     +P  I   + L  L+L  N L          L++L 
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 718 VLNLQRN 724
              L  N
Sbjct: 163 HAYLFGN 169

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.5 bits (149), Expect = 1e-09
 Identities = 81/539 (15%), Positives = 167/539 (30%), Gaps = 71/539 (13%)

Query: 67  HVVGLNLSSSGLSGS----ISRDFLNLTSLETLDLSSNSLTGLIPSELGQ-LQNLRIL-L 120
           H    NL   G  G     I     + T LE + L    +T      + +  +N ++L L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 121 LYSNSFSGKIPPEIG-FLNKLQVLRIGDNLLWGEIPPHIG----NLTELRELAIAYCQLN 175
                FS      I      L+ L + ++ +       +       T L  L I+     
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197

Query: 176 ---GSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVL 232
               ++   +    +L SL L        +   +    +L++                  
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE------------------ 239

Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKN 292
           L +          +   + V LS    LR L+   +     +P+  +  ++L  L+LS  
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 293 NLSG-SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLEL 351
            +    +  L  Q   L+ L + D     +           L++L +  ++     P   
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358

Query: 352 L----------RCSSLQQL-----DLSDNSFKGELPRSLDKLEEL--------TDLLLNN 388
           L           C  L+ +      +++ +    + R+   +               L  
Sbjct: 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALI-TIARNRPNMTRFRLCIIEPKAPDYLTL 417

Query: 389 NSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK-LQTLSAIYLYDNQMSG-SIPRE 446
                 F   + +   L  L L   ++T K+   IG   + +  + +     S   +   
Sbjct: 418 EPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476

Query: 447 LTNCSGLTEIDFFGNHFSG-SIPETMGKLKNLVILQLRQNDLSGPIPASLG-YCKRLQQI 504
           L+ C  L +++     F   ++     KL+ +  L +    +S      LG    +L   
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536

Query: 505 ALADNKLSGSVPLTFRFLSELYLITLYNNSFKGP---LPPSLFQLKKLRIINFSHNKFS 560
            + +     S P +          T+      GP   +P  ++ + +   + FS    +
Sbjct: 537 VIDERGAPDSRPESCPVERVFIYRTV-----AGPRFDMPGFVWNMDQDSTMRFSRQIIT 590

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 5e-07
 Identities = 89/525 (16%), Positives = 172/525 (32%), Gaps = 64/525 (12%)

Query: 252 VELSHLFNLRYLNLLGNIFDGEIPSELNKLAQ----LEELDLSKNNLS-GSISLLNTQLK 306
           VEL    +    NL+ + + G +   +  ++     LEE+ L +  ++   + L+    K
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130

Query: 307 NLETLVLSD-NAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLEL----LRCSSLQQLD 361
           N + LVLS    F+            +L++L L  + +       L       +SL  L+
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 362 LSDNSFK---GELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGK 418
           +S  + +     L R + +   L  L LN           +    +LE L          
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG------- 243

Query: 419 IPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLV 478
                               +   +   L+ C  L  +  F +     +P        L 
Sbjct: 244 -----------GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292

Query: 479 ILQLRQNDLSGP-IPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG 537
            L L    +    +   L  C +LQ++ + D      + +      +L  + ++ +    
Sbjct: 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV 352

Query: 538 PLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSR-NL 596
             P      + L  +               G   L ++       +      +A +R N+
Sbjct: 353 MEPNVALTEQGLVSV-------------SMGCPKLESVLYFCRQMTNAALITIARNRPNM 399

Query: 597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG 656
           +R RL        I  +      L  LD+ F +        +  C  L  L LS   LT 
Sbjct: 400 TRFRLCI------IEPKAPDYLTLEPLDIGFGAI-------VEHCKDLRRLSLSGL-LTD 445

Query: 657 TIPFWLGS-LQEIGELDLS-SNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK-IPPEIGNL 713
            +  ++G+  +++  L ++ + + +  +   +  C  L KL +R      K +      L
Sbjct: 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505

Query: 714 TALNVLNLQRNSLSGN-IPSTIQQCKKLYELRLSENFFTGSIPAD 757
             +  L +   S+S        Q+  KL    + E     S P  
Sbjct: 506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 28/278 (10%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLT--GLIPSELGQLQNLRILLLYS 123
           K +  L+     +   +   +   + L TL+LS  ++    L+   L Q   L+ L +  
Sbjct: 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV-KLLCQCPKLQRLWVLD 323

Query: 124 NSFSGKIPPEIGFLNKLQVLRIGD-NLLWGEIPPHIG---------NLTELRELAIAYCQ 173
                 +         L+ LR+        E    +             +L  +     Q
Sbjct: 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383

Query: 174 LNGSIPVEIG-NLKHLTSLDLQMNKLSGL-----------IPEAIHGCEELQKFAASNNM 221
           +  +  + I  N  ++T   L + +                   +  C++L++ + S  +
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 222 LEGTIPSSIVLLKSLQILNLANNSLSG-SIPVELSHLFNLRYLNLLG-NIFDGEIPSELN 279
            +          K +++L++A    S   +   LS   +LR L +      D  + +  +
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503

Query: 280 KLAQLEELDLSKNNLS-GSISLLNTQLKNLETLVLSDN 316
           KL  +  L +S  ++S G+  LL  ++  L   V+ + 
Sbjct: 504 KLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 67/505 (13%), Positives = 142/505 (28%), Gaps = 86/505 (17%)

Query: 351 LLRCSSLQQLDLSD---------------NSFKGELPRSLDKLEELTDLLLNNNSFTGSF 395
           + R   ++ ++L                       +         L ++ L     T   
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121

Query: 396 PPEIG-NLSKLENLFLFD-NMITGKIPVEIG----KLQTLSAIYLYDNQMSGSIPRELT- 448
              I  +    + L L      +      I      L+ L       + +SG        
Sbjct: 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181

Query: 449 NCSGLTEIDFFGNHFS---GSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIA 505
             + L  ++           ++   + +  NL  L+L +      +   L    +L+++ 
Sbjct: 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241

Query: 506 LA------DNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKF 559
                      +   + +      EL  ++ + ++    LP       +L  +N S+   
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

Query: 560 S--GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKL 617
                +  L     L  L + +      +    +  ++L  LR+        +      L
Sbjct: 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV--FPSEPFVMEPNVAL 359

Query: 618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN 677
           TE   + +S              C KL  +L    ++T        +L  I         
Sbjct: 360 TEQGLVSVSMG------------CPKLESVLYFCRQMTNA------ALITIAR------- 394

Query: 678 FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQC 737
                     N   + +  L               +       L    L     + ++ C
Sbjct: 395 ----------NRPNMTRFRLCI-------------IEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 738 KKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGE-IPPSLGSLLKLERLNISY 796
           K L  L LS    T  +   +G   +   +L ++    S   +   L     L +L I  
Sbjct: 432 KDLRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490

Query: 797 NQLQGQ-VPASLGKLTSLHVLNLSN 820
                + + A+  KL ++  L +S+
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSS 515

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.1 bits (145), Expect = 1e-09
 Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 3/102 (2%)

Query: 737 CKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP-SLGSLLKLERLNIS 795
                 LR + +         L     L   L +        +    L  L +L  L I 
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLT-ELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 796 YNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLS 837
            + L+   P +      L  LNLS N L+     T  G  L 
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 225 TIPSSIVLLKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLGNIFDGEIPSE-LNKLA 282
                +   ++L  L + N      + +  L  L  LR L ++ +     +  +  +   
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 283 QLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT 319
           +L  L+LS N L  S+S    Q  +L+ LVLS N   
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 141 QVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVE-IGNLKHLTSLDLQMNKLS 199
            +    D  L  +   H+     L EL I   Q    + +  +  L  L +L +  + L 
Sbjct: 12  GLRCTRDGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 200 GLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL 246
            + P+A H    L +   S N LE ++    V   SLQ L L+ N L
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 4e-07
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA-DLGRLTELQVILDLSKNNF 775
            +   +  +L       +   + L EL +        +   DL  L EL+  L + K+  
Sbjct: 12  GLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN-LTIVKSGL 68

Query: 776 SGEIPP-SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
              + P +     +L RLN+S+N L+  +     +  SL  L LS N L 
Sbjct: 69  R-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSI---SLLNTQLKNLETLVLSDNAFTGSIPIKFCLN 329
           +    L     L EL +        +    L    L  L  L +  +     +       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRG--LGELRNLTIVKSGLR-FVAPDAFHF 78

Query: 330 NSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSF 367
              L +L L+ N L      + ++  SLQ+L LS N  
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 5/113 (4%)

Query: 353 RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE-IGNLSKLENLFLF 411
                  L  + +    +    L   E LT+L + N           +  L +L NL + 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 412 DNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHF 463
            + +   +  +       LS + L  N +  S+  +      L E+   GN  
Sbjct: 65  KSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAE-IGNCSKLLK 694
           P        + L  + +         L   + + EL + +      +    +    +L  
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 695 LSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT 751
           L++  + L   + P+       L+ LNL  N+L  ++     Q   L EL LS N   
Sbjct: 61  LTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 4e-06
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 566 LTGSNSLTALDLTNNSFSGPIPSE-LAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFL 623
           L G+ +LT L + N      +    L     L  L +  + L   +  + F     L+ L
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRL 85

Query: 624 DLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT 655
           +LSFN+    ++ +  +   L  L+LS N L 
Sbjct: 86  NLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSE-FGKLTELNFLDLSFNSFTGQIAPQ-LSKCAK 643
               L  + NL+ L + +     ++       L EL  L +  +     +AP       +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 644 LAHLLLSNNELTGTIP---FWLGSLQEIGELDLSSNNFN 679
           L+ L LS N L  ++        SLQ   EL LS N  +
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQ---ELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 509 NKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ-LKKLRIINFSHNKFSGSIYPLT 567
              +            L  + + N      L     + L +LR +    +     + P  
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75

Query: 568 GSN--SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLT 607
                 L+ L+L+ N+    +  +     +L  L L+ N L 
Sbjct: 76  FHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 14/108 (12%)

Query: 54  CSW-HGVTCSDDQ-----------KHVVGLNLSSSGLSGSI-SRDFLNLTSLETLDLSSN 100
                G+ C+ D            +++  L + +      +  RD   L  L  L +  +
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 101 SLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148
            L  + P        L  L L  N+    +  +      LQ L +  N
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 442 SIPRELTNCSGLTEIDFFGNHFSGSIP-ETMGKLKNLVILQLRQNDLSGPIPASLGYCKR 500
                L     LTE+          +    +  L  L  L + ++ L    P +  +  R
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
           L ++ L+ N L      T + LS L  + L  N  
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 331 SSLQQLILARNKLSGEFPLELLR-CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN 389
            +L +L +   +      L  LR    L+ L +  +  +   P +      L+ L L+ N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 390 SFTGSFPPEIGNLSKLENLFLFDN 413
           +   S   +      L+ L L  N
Sbjct: 91  ALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 491 IPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNNSFKGPLPPSLFQ-LKK 548
               L   + L ++ + + +    + L   R L EL  +T+  +  +  + P  F    +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 549 LRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSF 582
           L  +N S N      +      SL  L L+ N  
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 681 TVPAEIGNCSKLLKLSLRGNNLSGKIPPE-IGNLTALNVLNLQRNSLSGNIPSTIQQCKK 739
                +     L +L +        +    +  L  L  L + ++ L    P       +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 740 LYELRLSENFFTGSIPADLGRLTELQVILDLSKNNF 775
           L  L LS N    S+     +   LQ  L LS N  
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQE-LVLSGNPL 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 63/316 (19%), Positives = 103/316 (32%), Gaps = 73/316 (23%)

Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
               +TSLDL +N L  +         EL +  A+                S+  LNL+ 
Sbjct: 20  IPHGVTSLDLSLNNLYSI------STVELIQAFANTP-------------ASVTSLNLSG 60

Query: 244 NSLSGSIPVELSHLF-----NLRYLNLLGNIFDGEIPSEL-----NKLAQLEELDLSKNN 293
           NSL      EL  +      N+  LNL GN    +   EL          +  LDL  N+
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 294 LSGS-----ISLLNTQLKNLETLVLSDNAFT--GSIPIKFCL--NNSSLQQLILARNKLS 344
            S           +    ++ +L L  N      S  +   L    +++  L L  N L+
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 345 GEFPLELLR-----CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI 399
            +   EL +      +S+  LDLS N         L    EL  +  +  +         
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLL------GLKSYAELAYIFSSIPN--------- 225

Query: 400 GNLSKLENLFLFDNMITGKIPVEIGKL----QTLSAIYLYDNQMSG-------SIPRELT 448
                + +L L  N + G     +  L    + L  +YL  + +         ++     
Sbjct: 226 ----HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 449 NCSGLTEIDFFGNHFS 464
           N   +  +D  G    
Sbjct: 282 NIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 60/370 (16%), Positives = 115/370 (31%), Gaps = 69/370 (18%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQL-----QNLRILLLYSNS 125
             L+    S  +         + +LDLS N+L  +   EL Q       ++  L L  NS
Sbjct: 3   YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62

Query: 126 FSGKIPPEIGFL-----NKLQVLRIGDNLLWGEIPPHIGNL-----TELRELAIAYCQLN 175
              K   E+  +       +  L +  N L  +    +          +  L + +   +
Sbjct: 63  LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 176 GSIPVEIGNL-----KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSI 230
                E           +TSL+L+ N L           +EL +  A+            
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGI------KSSDELIQILAAIP---------- 166

Query: 231 VLLKSLQILNLANNSLSGSIPVELSHLF-----NLRYLNLLGNIFDGEIPSEL-----NK 280
               ++  LNL  N+L+     EL+        ++  L+L  N+   +  +EL     + 
Sbjct: 167 ---ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 281 LAQLEELDLSKNNLSGS----ISLLNTQLKNLETLVLSDNAFTGSIPIKFCL------NN 330
              +  L+L  N L G     + LL   LK+L+T+ L  +        +         N 
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 331 SSLQQLILARNKLSGEFPLELLR-----CSSLQQLDLSDNSFK-----GELPRSLDKLEE 380
             +  +     ++     + +               L +               L+  +E
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 381 LTDLLLNNNS 390
           L + +     
Sbjct: 344 LRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 52/300 (17%), Positives = 107/300 (35%), Gaps = 61/300 (20%)

Query: 566 LTGSNSLTALDLTNNSFSGPIPSELAM-----SRNLSRLRLAHNHLTGNIPSEFGKL--- 617
            +  + +T+LDL+ N+       EL         +++ L L+ N L      E  ++   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 618 --TELNFLDLSFNSFTGQIAPQLSK-----CAKLAHLLLSNNELTGTIPFWLGSLQEIGE 670
               +  L+LS N  + + + +L K        +  L L  N+ +        S  E  +
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK------SSSEFKQ 131

Query: 671 LDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL-----TALNVLNLQRNS 725
              S+              + +  L+LRGN+L  K   E+  +       +N LNL+ N+
Sbjct: 132 A-FSNLP------------ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 726 LSGN----IPSTIQQC-KKLYELRLSENFFTGSIPADLGRL-----TELQVILDLSKNNF 775
           L+      +   +      +  L LS N       A+L  +       +   L+L  N  
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS-LNLCLNCL 237

Query: 776 SGEIPPSLGSLLK----LERLNISYNQLQGQVPA-------SLGKLTSLHVLNLSNNHLQ 824
            G    +L  L      L+ + + Y+ ++            +   +  + +++ +   + 
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 57/310 (18%), Positives = 95/310 (30%), Gaps = 62/310 (20%)

Query: 571 SLTALDLTNNSFSGPIPSELA-----MSRNLSRLRLAHNHLTGNIPSEFGKL-----TEL 620
           S+T+L+L+ NS       EL      +  N++ L L+ N L+     E  K        +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 621 NFLDLSFNSFTGQ----IAPQLSKC-AKLAHLLLSNNELTGTIPFWLGSLQEIGE----- 670
             LDL +N F+ +         S   A +  L L  N+L         S  E+ +     
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK------SSDELIQILAAI 165

Query: 671 ------LDLSSNNFNGTVPAEIG-----NCSKLLKLSLRGNNLSGKIPPEIG-----NLT 714
                 L+L  NN      AE+        + +  L L  N L  K   E+         
Sbjct: 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225

Query: 715 ALNVLNLQRNSLSG----NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTEL------ 764
            +  LNL  N L G    N+       K L  + L  +            L         
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 765 QVILDLSKNNFSGEIPPSLGSLLK-----LERLNISYNQL-----QGQVPASLGKLTSLH 814
            +++D +           + +L++      +  ++    L            L     L 
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

Query: 815 VLNLSNNHLQ 824
               +   L 
Sbjct: 346 ESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 57/333 (17%), Positives = 105/333 (31%), Gaps = 55/333 (16%)

Query: 66  KHVVGLNLSSSGLSGSISRDFL-----NLTSLETLDLSSNSLTGLIPSELGQL-----QN 115
             V  L+LS + L    + + +        S+ +L+LS NSL      EL Q+      N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 116 LRILLLYSNSFSGKIPPEIGFL-----NKLQVLRIGDNLLWGEIPPHIGNL-----TELR 165
           +  L L  N  S K   E+          + VL +G N    +               + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 166 ELAIAYCQLNGSIPVEIGNL-----KHLTSLDLQMNKLS----GLIPEAI-HGCEELQKF 215
            L +    L      E+  +      ++ SL+L+ N L+      + + +      +   
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201

Query: 216 AASNNML--EGTIPSSIVLLK---SLQILNLANNSLSGSIPVELSHLF----NLRYLNLL 266
             S N+L  +     + +       +  LNL  N L G     L  L     +L+ + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 267 GNIFDGEIPSELNKLAQ-------LEELDLSKNNLSGS-----ISLLNTQLKNLETLVLS 314
            +I       +   L         +  +D +   +  S      +L+       +   L 
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321

Query: 315 DNAFT----GSIPIKFCLNNSSLQQLILARNKL 343
           +            I+       L++ I     L
Sbjct: 322 NQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 47/231 (20%), Positives = 71/231 (30%), Gaps = 42/231 (18%)

Query: 634 IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSL-----QEIGELDLSSNNFNGTVPAEIG- 687
           +    S    +  L LS N L       L          +  L+LS N+       E+  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 688 ----NCSKLLKLSLRGNNLSGKIPPEIGNL-----TALNVLNLQRNSLSGN----IPSTI 734
                 + +  L+L GN LS K   E+          + VL+L  N  S           
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 735 QQC-KKLYELRLSENFFT--------GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS 785
                 +  L L  N             + A    +      L+L  NN + +    L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS----LNLRGNNLASKNCAELAK 189

Query: 786 LLK-----LERLNISYNQLQGQVPASLGKL-----TSLHVLNLSNNHLQGQ 826
            L      +  L++S N L  +  A L  +       +  LNL  N L G 
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL-GSLL 787
            IP  +       EL L  N FT  +P +L     L  ++DLS N  S  +      ++ 
Sbjct: 28  GIPRDVT------ELYLDGNQFT-LVPKELSNYKHLT-LIDLSNNRIS-TLSNQSFSNMT 78

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           +L  L +SYN+L+   P +   L SL +L+L  N + 
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 334 QQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG 393
            +L L  N+ +   P EL     L  +DLS+N       +S   + +L  L+L+ N    
Sbjct: 34  TELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 394 SFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDN 437
             PP     L  L  L L  N I+  +P      L  LS + +  N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 36/153 (23%), Positives = 54/153 (35%), Gaps = 51/153 (33%)

Query: 358 QQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITG 417
            +L L  N F   +P+ L   + LT + L+NN            +S L N   F NM   
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-----------ISTLSN-QSFSNMT-- 78

Query: 418 KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL 477
                  +L TL    L  N++   IP    +                        LK+L
Sbjct: 79  -------QLLTL---ILSYNRLR-CIPPRTFD-----------------------GLKSL 104

Query: 478 VILQLRQNDLSGPIP-ASLGYCKRLQQIALADN 509
            +L L  ND+S  +P  +      L  +A+  N
Sbjct: 105 RLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 753 SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTS 812
            +P  + R       L L  N F+  +P  L +   L  +++S N++      S   +T 
Sbjct: 24  VLPKGIPRDVT---ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 813 LHVLNLSNNHLQ 824
           L  L LS N L+
Sbjct: 80  LLTLILSYNRLR 91

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG 632
           T L L  N F+  +P EL+  ++L+ + L++N ++      F  +T+L  L LS+N    
Sbjct: 34  TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 633 QIAPQLSKCAKLAHLLLSNNELTGTIP---F-WLGSLQEI 668
                      L  L L  N+++  +P   F  L +L  +
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHL 131

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 16/112 (14%)

Query: 261 RYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN---TQLKNLETLVLSDNA 317
             L L GN F   +P EL+    L  +DLS N +S   +L N   + +  L TL+LS N 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS---TLSNQSFSNMTQLLTLILSYNR 89

Query: 318 FTGSIPIKFCLNNSSLQQLILARNKLS----GEFPLELLRCSSLQQLDLSDN 365
               IP +      SL+ L L  N +S    G F       S+L  L +  N
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN----DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 162 TELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNM 221
            ++ EL +   Q    +P E+ N KHLT +DL  N++S L  ++     +L     S N 
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 222 LEGTIPSSIV-LLKSLQILNLANNSLSGSIPVEL-SHLFNLRYLNLLGNIFD 271
           L   IP      LKSL++L+L  N +S  +P    + L  L +L +  N   
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
           L+     +   +   LS L   ++L L  N  + +I S L+ +  L  L L +N +   I
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 299 SLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLR-CSSL 357
             L+     LE L +S N       +       +L+ L ++ NK++    ++ L     L
Sbjct: 86  ENLDAVADTLEELWISYNQIAS---LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142

Query: 358 QQLDLSDN 365
           + L L+ N
Sbjct: 143 EDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 9/128 (7%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
           ++ + L+ L   + L LS NN+   IS L+  ++NL  L L  N       +    +   
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KISSLSG-MENLRILSLGRNLIKKIENLDAVADT-- 94

Query: 333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFK--GELPRSLDKLEELTDLLLNNNS 390
           L++L ++ N+++    +E  +  +L+ L +S+N     GE+   L  L++L DLLL  N 
Sbjct: 95  LEELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNP 151

Query: 391 FTGSFPPE 398
               +   
Sbjct: 152 LYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 691 KLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFF 750
           + ++L      +  K+   +  L A   L L  N++   I S++   + L  L L  N  
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI 82

Query: 751 TGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG-QVPASLGK 809
              I  +L  + +    L +S N  +  +   +  L+ L  L +S N++        L  
Sbjct: 83  K-KIE-NLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 810 LTSLHVLNLSNN 821
           L  L  L L+ N
Sbjct: 139 LDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 719 LNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGE 778
           L+     +   + +T+   K    L LS N     I + L  +  L+ IL L +N    +
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLR-ILSLGRNLIK-K 84

Query: 779 IPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           I         LE L ISYNQ+     + + KL +L VL +SNN + 
Sbjct: 85  IENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 10/139 (7%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
           EL          + A +        L+L  NN+  KI   +  +  L +L+L RN +   
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK-K 84

Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS--GEIPPSLGSLL 787
           I +       L EL +S N    S+ + + +L  L+V L +S N  +  GEI   L +L 
Sbjct: 85  IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRV-LYMSNNKITNWGEIDK-LAALD 140

Query: 788 KLERLNISYNQLQGQVPAS 806
           KLE L ++ N L      +
Sbjct: 141 KLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 68  VVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFS 127
            V L+     +   +      L + + L LS+N++  +  S L  ++NLRIL L  N   
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK 83

Query: 128 GKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVE-IGNLK 186
            KI       + L+ L I  N +       I  L  LR L ++  ++     ++ +  L 
Sbjct: 84  -KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 187 HLTSLDLQMNKLSGLIPE 204
            L  L L  N L     E
Sbjct: 141 KLEDLLLAGNPLYNDYKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 7/131 (5%)

Query: 619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF 678
           E   L          +   LS      HL LS N +   I   L  ++ +  L L  N  
Sbjct: 26  EKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLI 82

Query: 679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG-NIPSTIQQC 737
              +         L +L +  N ++  +   I  L  L VL +  N ++       +   
Sbjct: 83  K-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 738 KKLYELRLSEN 748
            KL +L L+ N
Sbjct: 140 DKLEDLLLAGN 150

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.8 bits (142), Expect = 6e-09
 Identities = 57/405 (14%), Positives = 110/405 (27%), Gaps = 54/405 (13%)

Query: 72  NLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIP 131
             ++ GL  SI     +   ++TL +  +S +      L +L      L   N       
Sbjct: 150 GFTTDGLL-SIVT---HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN------- 198

Query: 132 PEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQL--NGSIPVEIGNLKHLT 189
                    +  +I    L         N   L  + +   ++           NL+   
Sbjct: 199 -----FYMTEFAKISPKDLET----IARNCRSLVSVKVGDFEILELVGFFKAAANLEEFC 249

Query: 190 SLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGS 249
              L  +         +    +L +   S       +P        ++ L+L    L   
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETE 308

Query: 250 IPVEL-SHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL--- 305
               L     NL  L     I D  +        QL+ L + +      +      +   
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 306 ---------KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS 356
                    + LE + +  +  T          N SL+ +      L       L+    
Sbjct: 369 GLIALAQGCQELEYMAVYVSDIT----------NESLESIGTYLKNLCD---FRLVLLDR 415

Query: 357 LQQL-DLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG-NLSKLENLFLFDNM 414
            +++ DL  ++    L     KL       L     T      IG     +  + L    
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRF-AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474

Query: 415 ITGKIPVEIGK-LQTLSAIYLYDNQMS-GSIPRELTNCSGLTEID 457
            + +  +E  +    L  + +     S  +I   +T    L  + 
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.3 bits (133), Expect = 8e-08
 Identities = 45/307 (14%), Positives = 94/307 (30%), Gaps = 31/307 (10%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
           NL       L+ +         L   + L  L L     +  +P    F  +++ L +  
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLY 302

Query: 148 -NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAI 206
             L   +    I     L  L       +  + V     K L  L ++       + +  
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362

Query: 207 ------------HGCEELQKFAASNNML--EG--TIPSSIVLLKSLQILNLANNSLSGSI 250
                        GC+EL+  A   + +  E   +I + +  L   +++ L        +
Sbjct: 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422

Query: 251 PVE------LSHLFNLRYLNLL---GNIFDGEIPSELNKLAQLEELDLSKNNLS-GSISL 300
           P++      L     LR        G + D  +         +  + L     S   +  
Sbjct: 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482

Query: 301 LNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS--GEFPLELLR-CSSL 357
            +    NL+ L +    F+            SL+ L +   + S  G+  +++ R   ++
Sbjct: 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542

Query: 358 QQLDLSD 364
           + +    
Sbjct: 543 ELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 72/500 (14%), Positives = 150/500 (30%), Gaps = 74/500 (14%)

Query: 353 RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD 412
           R  +L+ L L             +         +   S          NL +L+++    
Sbjct: 71  RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEIS---------NNLRQLKSVHFRR 121

Query: 413 NMIT--GKIPVEIGKLQTLSAIYLYDNQM--SGSIPRELTNCSGLTEIDFFGNHFSGSIP 468
            +++      +   +   L  + L       +  +   +T+C  +  +    + FS    
Sbjct: 122 MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181

Query: 469 ETMGKL----KNLVILQLRQNDLSGPIPASLGY----CKRLQQIALADNKLSGSVPL--T 518
           + + +L     +L +L     + +   P  L      C+ L  + + D ++   V     
Sbjct: 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241

Query: 519 FRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT 578
              L E    +L  +        +L   +KL  +  S+   +        +  +  LDL 
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301

Query: 579 NNSFSGPIPSELAMS-RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ 637
                      L     NL  L    N +                 D             
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLET-RNVIG----------------DRGLEVLA------ 338

Query: 638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSL 697
              C +L  L +        +    G + + G + L+              C +L  +++
Sbjct: 339 -QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ------------GCQELEYMAV 385

Query: 698 RGNNLSGKIPPEIG----NLTALNVLNLQRNSLSGNIP------STIQQCKKLYELRLSE 747
             ++++ +    IG    NL    ++ L R     ++P      S +  CKKL       
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445

Query: 748 N--FFTGSIPADLGRLTELQVILDLSKNNFSGE-IPPSLGSLLKLERLNISYNQLQGQ-V 803
                T    + +G+ +     + L     S E +         L++L +       + +
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505

Query: 804 PASLGKLTSLHVLNLSNNHL 823
            A++ KL SL  L +     
Sbjct: 506 AAAVTKLPSLRYLWVQGYRA 525

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 20/155 (12%)

Query: 172 CQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIV 231
           C   G   V  G     T LDL+ N L  L          L +     N L+ ++P+ + 
Sbjct: 14  CYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVF 72

Query: 232 -LLKSLQILNLANNSLSGSIPVEL-SHLFNLRYLNLLGN--------IFDGEIPSELNKL 281
             L SL  LNL+ N L  S+P  +   L  L+ L L  N        +FD        KL
Sbjct: 73  NKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD--------KL 123

Query: 282 AQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316
            QL++L L +N L      +  +L +L+ + L DN
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 706 IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL-GRLTEL 764
           +P  I   T    L+L+ NSL         +   L +L L  N    S+P  +  +LT L
Sbjct: 22  VPTGIPAQT--TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 765 QVILDLSKNNFSGEIPPSL-GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHL 823
              L+LS N     +P  +   L +L+ L ++ NQLQ        KLT L  L L  N L
Sbjct: 79  T-YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 824 Q 824
           +
Sbjct: 137 K 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
           +    L L  N L           +SL QL L  N  +       +KL  LT L L+ N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 391 FTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPRE-L 447
              S P  +   L++L+ L L  N +   +P  +  KL  L  + LY NQ+  S+P    
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF 144

Query: 448 TNCSGLTEIDFFGN 461
              + L  I    N
Sbjct: 145 DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+L ++ L    +  F  LTSL  L L  N L  L      +L +L  L L +N     +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 131 PPEIGF--LNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLK 186
           P  + F  L +L+ L +  N L   +P  +   LT+L++L +   QL  S+P  +   L 
Sbjct: 92  PNGV-FDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 148

Query: 187 HLTSLDLQMN 196
            L  + L  N
Sbjct: 149 SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 13/136 (9%)

Query: 309 ETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL----SGEFPLELLRCSSLQQLDLSD 364
             L L  N+   S+P       +SL QL L  NKL    +G F     + +SL  L+LS 
Sbjct: 31  TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN----KLTSLTYLNLST 85

Query: 365 NSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEI 423
           N  +       DKL +L +L LN N    S P  +   L++L++L L+ N +   +P  +
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGV 143

Query: 424 -GKLQTLSAIYLYDNQ 438
             +L +L  I+L+DN 
Sbjct: 144 FDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 14/138 (10%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGN-LSKLENLFLFDN 413
           +    LDL  NS K       D+L  LT L L  N    S P  + N L+ L  L L  N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86

Query: 414 MITGKIPVEI-GKLQTLSAIYLYDNQMSGSIPR----ELTNCSGLTEIDFFGNHFSGSIP 468
            +   +P  +  KL  L  + L  NQ+  S+P     +LT    L ++  + N    S+P
Sbjct: 87  QLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ---LKDLRLYQNQLK-SVP 140

Query: 469 E-TMGKLKNLVILQLRQN 485
           +    +L +L  + L  N
Sbjct: 141 DGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 261 RYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTG 320
            YL+L  N          ++L  L +L L  N L    + +  +L +L  L LS N    
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 321 SIPIKFCLNNSSLQQLILARNKL----SGEFPLELLRCSSLQQLDLSDNSFKGELPRSLD 376
           S+P       + L++L L  N+L     G F     + + L+ L L  N  K       D
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----KLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 377 KLEELTDLLLNNN 389
           +L  L  + L++N
Sbjct: 146 RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVLRIGDN 148
                LDL +NSL  L      +L +L  L L  N     +P  +   L  L  L +  N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86

Query: 149 LLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKL 198
            L   +P  +   LT+L+ELA+   QL  S+P  +   L  L  L L  N+L
Sbjct: 87  QL-QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 36/158 (22%)

Query: 382 TDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDNQMS 440
           T L L  NS           L+ L  L+L  N +   +P  +  KL +L+ + L  NQ+ 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 441 GSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA----SLG 496
            S+P                            KL  L  L L  N L   +P      L 
Sbjct: 90  -SLP-----------------------NGVFDKLTQLKELALNTNQLQS-LPDGVFDKLT 124

Query: 497 YCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNN 533
              +L+ + L  N+L  SVP   F  L+ L  I L++N
Sbjct: 125 ---QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.0 bits (126), Expect = 2e-07
 Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 24/207 (11%)

Query: 202 IPEAIHGCEELQKFAASNNMLEGTIPSSIV------LLKSLQILNLANNSLSGSIPVELS 255
           I E        +     +   E    S I       +L ++ +LN      + ++ +   
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK 190

Query: 256 HLFNLRYLNLLGNIFDGEIPSEL--NKLAQLEELDLS--KNNLSGSIS-------LLNTQ 304
              NL+ L ++       +  ++  + L  LE+L L     +                 +
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 305 LKNLETLVLSDNAFTGSIPIKF--CLNNSSLQQLILARNKLSGEFPLELL----RCSSLQ 358
             NL+ L + D      +   F        L+ + ++   L+ E    LL    +   L+
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 359 QLDLSDNSFKGELPRSLDK-LEELTDL 384
            +++  N    E+ + L K L    D+
Sbjct: 311 FINMKYNYLSDEMKKELQKSLPMKIDV 337

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 22/177 (12%)

Query: 632 GQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCS- 690
             ++P L     L +L +              +L+    L++ S     +V  +I     
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKS---LEIISGGLPDSVVEDILGSDL 218

Query: 691 ---KLLKLSLRGNNLSGKIPPEI-------GNLTALNVLNLQRNSLSGNIPSTI---QQC 737
              + L L +   +        +            L  L +        +          
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 738 KKLYELRLSENFFTGS----IPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLE 790
            +L  + +S    T      +   + ++  L+  +++  N  S E+   L   L ++
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKF-INMKYNYLSDEMKKELQKSLPMK 334

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 2e-05
 Identities = 29/201 (14%), Positives = 65/201 (32%), Gaps = 32/201 (15%)

Query: 123 SNSFSGKIPPEIGFLNKLQV--LRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPV 180
           S      + P +  +  L    ++  +NL  G+ P        L+ L I    L  S+  
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-----RPNLKSLEIISGGLPDSVVE 211

Query: 181 EIG--NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQI 238
           +I   +L +L  L L +  +     +        +   + +               +L+ 
Sbjct: 212 DILGSDLPNLEKLVLYVG-VEDYGFDG--DMNVFRPLFSKDR------------FPNLKW 256

Query: 239 LNLANNSLSGSIPVELSH---LFNLRYLNLLGNIFDGE----IPSELNKLAQLEELDLSK 291
           L + +      +         L  L  +++   +   E    +   ++K+  L+ +++  
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316

Query: 292 NNLSGS-ISLLNTQLKNLETL 311
           N LS      L   L     +
Sbjct: 317 NYLSDEMKKELQKSLPMKIDV 337

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 4e-05
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 16/168 (9%)

Query: 489 GPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLY--NNSFKGPLPPSLFQL 546
             +   L     L  + +               L  L +I+    ++  +  L   L  L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 547 KKLRIINFSHNKFSGS----IYPLTGSN---SLTALDLTNNSFSGPIPSELAMSRNLSRL 599
           +KL +     +           PL   +   +L  L + +      +      S  L +L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 600 R---LAHNHLTGN----IPSEFGKLTELNFLDLSFNSFTGQIAPQLSK 640
               ++   LT      +     K+  L F+++ +N  + ++  +L K
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 22/216 (10%), Positives = 60/216 (27%), Gaps = 23/216 (10%)

Query: 577 LTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAP 636
           +  N         L         +        ++      +  LN L +   +    ++ 
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---NLSI 187

Query: 637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQ----EIGELDLSSNNFNGTVPAEI------ 686
                  L  L + +  L  ++   +        E   L +   ++       +      
Sbjct: 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247

Query: 687 -GNCSKLLKLSLRGNNLSGKIPPEIGN---LTALNVLNLQRNSLSGN----IPSTIQQCK 738
                 L  L +        +         L  L  +++    L+      +   + + K
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307

Query: 739 KLYELRLSENFFTGSIPADLGRLTELQVILDLSKNN 774
            L  + +  N+ +  +  +L +   L + +D+S + 
Sbjct: 308 HLKFINMKYNYLSDEMKKELQK--SLPMKIDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 9e-04
 Identities = 19/160 (11%), Positives = 50/160 (31%), Gaps = 20/160 (12%)

Query: 537 GPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSR-- 594
             L P L  +  L  +       +          +L +L++ +      +  ++  S   
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGT--NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP 219

Query: 595 NLSRLRL---AHNHLTGNIPSEF------GKLTELNFLDLSFNSFTGQIAPQLSKC---A 642
           NL +L L     ++      + F       +   L +L +        +     +     
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279

Query: 643 KLAHLLLSNNELTGT----IPFWLGSLQEIGELDLSSNNF 678
           +L  + +S   LT      +   +  ++ +  +++  N  
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 12/99 (12%)

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPAD--LGRLTELQVILDLSKNNFSGEIPPSL-GS 785
           +IP          EL L++N     I +D   GRL  L   L+L +N  +  I P+    
Sbjct: 26  DIPLHTT------ELLLNDNELG-RISSDGLFGRLPHLV-KLELKRNQLT-GIEPNAFEG 76

Query: 786 LLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
              ++ L +  N+++         L  L  LNL +N + 
Sbjct: 77  ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 334 QQLILARNKLSGEFPLELL-RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT 392
            +L+L  N+L       L  R   L +L+L  N   G  P + +    + +L L  N   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 393 GSFPPEI-GNLSKLENLFLFDNMITGKIPVEI-GKLQTLSAIYLYDN 437
                ++   L +L+ L L+DN I+  +       L +L+++ L  N
Sbjct: 92  -EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 90  TSLETLDLSSNSLTGLIPSEL-GQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIG 146
                L L+ N L  +    L G+L +L  L L  N  +  I P   F   + +Q L++G
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNA-FEGASHIQELQLG 86

Query: 147 DNLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMN 196
           +N +  EI   +   L +L+ L +   Q++  +      +L  LTSL+L  N
Sbjct: 87  ENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 285 EELDLSKNNLSG-SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKL 343
            EL L+ N L   S   L  +L +L  L L  N  T  I        S +Q+L L  NK+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 344 S----GEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF 391
                  F    L    L+ L+L DN     +P S + L  LT L L +N F
Sbjct: 91  KEISNKMF----LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 705 KIPPEIGNLTALNVLNLQRNSLSGNIPSTI-QQCKKLYELRLSENFFTGSIPADL-GRLT 762
           +IP +I   T    L L  N L       +  +   L +L L  N  T  I  +     +
Sbjct: 22  EIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGAS 78

Query: 763 ELQVILDLSKNNFSGEIPPSL-GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
            +Q  L L +N    EI   +   L +L+ LN+  NQ+   +P S   L SL  LNL++N
Sbjct: 79  HIQ-ELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 154 IPPHIGNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMNKLSGLIPEAIHGCEEL 212
           IP  I   T   EL +   +L       + G L HL  L+L+ N+L+G+ P A  G   +
Sbjct: 23  IPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 213 QKFAASNNMLEGTIPSSIVL-LKSLQILNLANNSLSGSIPVE-LSHLFNLRYLNLLGNIF 270
           Q+     N ++  I + + L L  L+ LNL +N +S  +      HL +L  LNL  N F
Sbjct: 81  QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

Query: 271 D 271
           +
Sbjct: 139 N 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 24/117 (20%)

Query: 237 QILNLANNSLSGSIPVEL-SHLFNLRYLNLLGN--------IFDGEIPSELNKLAQLEEL 287
             L L +N L       L   L +L  L L  N         F+          + ++EL
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE--------GASHIQEL 83

Query: 288 DLSKNNLSGSISLLN---TQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN 341
            L +N +     + N     L  L+TL L DN  +  +      + +SL  L LA N
Sbjct: 84  QLGENKIK---EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 27/121 (22%)

Query: 573 TALDLTNNSFSGPIPSELAMSR--NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSF 630
           T L L +N     I S+    R  +L +L L  N LTG  P+ F   + +  L L  N  
Sbjct: 32  TELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-- 88

Query: 631 TGQIAPQLS--------KCAKLAHLLLSNNELTGTIP---F-WLGSLQEIGELDLSSNNF 678
                 ++            +L  L L +N+++  +    F  L SL  +   +L+SN F
Sbjct: 89  ------KIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSL---NLASNPF 138

Query: 679 N 679
           N
Sbjct: 139 N 139

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSK 291
           +K L + N  +N   G +         L +L+ +   +        L KL +L++L+LS 
Sbjct: 19  VKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSD 73

Query: 292 NNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARN 341
           N +SG + +L  +  NL  L LS N       I+      +L+ L L   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 27/138 (19%)

Query: 280 KLAQLEELDLSKN-NLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLIL 338
             + ++EL L  + +  G +  L  + + LE L   +   T    I      + L++L L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLEL 71

Query: 339 ARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE 398
           + N++SG   +   +C +L  L+LS N  K      L  +E L                 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-----DLSTIEPLK---------------- 110

Query: 399 IGNLSKLENLFLFDNMIT 416
              L  L++L LF+  +T
Sbjct: 111 --KLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 349 LELLRCSSLQQLDLSDNSFK-GELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSK--- 404
           L     S +++L L ++    G+L    D+ EEL  L   N   T      I NL K   
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNK 65

Query: 405 LENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGN 461
           L+ L L DN ++G + V   K   L+ + L  N++   S    L     L  +D F  
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 329 NNSSLQQLILARNKLSGEFPLELL-RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLN 387
             S +++L+L  ++ +      L      L+ L   +      +  +L KL +L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELS 72

Query: 388 NNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVE-IGKLQTLSAIYLYDN 437
           +N  +G           L +L L  N I     +E + KL+ L ++ L++ 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 595 NLSRLRLAHNHLT-GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNE 653
           ++  L L ++    G +     +  EL FL       T      L K  KL  L LS+N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNR 75

Query: 654 LTGTIPFWLGSLQEIGELDLSSNNFNG-TVPAEIGNCSKLLKLSLRGN 700
           ++G +         +  L+LS N     +    +     L  L L   
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 688 NCSKLLKLSLRGN-NLSGKIPPEIGNLTALNVLNLQRNSLS--GNIPSTIQQCKKLYELR 744
             S + +L L  + +  GK+         L  L+     L+   N+P       KL +L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLE 70

Query: 745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSG-EIPPSLGSLLKLERLNISYN 797
           LS+N  +G +     +   L   L+LS N          L  L  L+ L++   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTH-LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 152 GEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
           G++        EL  L+     L  SI   +  L  L  L+L  N++SG +      C  
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 212 LQKFAASNNMLEG-TIPSSIVLLKSLQILNLANN 244
           L     S N ++  +    +  L++L+ L+L N 
Sbjct: 90  LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 9/138 (6%)

Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSK 291
           ++ L + N  +N   G I    +   NL +L+L+   +        L KL +L++L+LS+
Sbjct: 26  VRELVLDNCKSND--GKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSE 80

Query: 292 NNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGE--FPL 349
           N + G + +L  +L NL  L LS N       ++       L+ L L   +++    +  
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140

Query: 350 ELL-RCSSLQQLDLSDNS 366
            +      L  LD  D  
Sbjct: 141 SVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 328 LNNSSLQQLILARNKLSGEFPLELL-RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLL 386
              +++++L+L   K +      L     +L+ L L +      +  +L KL +L  L L
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLEL 78

Query: 387 NNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVE-IGKLQTLSAIYLYDN 437
           + N   G        L  L +L L  N +     +E + KL+ L ++ L++ 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 7/122 (5%)

Query: 298 ISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSL 357
           + L N     +  LVL +                +L+ L L    L     L  L    L
Sbjct: 16  LELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP--KL 73

Query: 358 QQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLS---KLENLFLFDNM 414
           ++L+LS+N   G L    +KL  LT L L+ N         +  L     L++L LF+  
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL--KDISTLEPLKKLECLKSLDLFNCE 131

Query: 415 IT 416
           +T
Sbjct: 132 VT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 599 LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI 658
           L    ++  G I     +   L FL L            L K  KL  L LS N + G +
Sbjct: 31  LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGL 87

Query: 659 PFWLGSLQEIGELDLSSNNFNGTVPAE-IGNCSKLLKLSLRGN 700
                 L  +  L+LS N        E +     L  L L   
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD 672
               + EL  LD   ++  G+I    ++   L  L L N  L  ++   L  L ++ +L+
Sbjct: 22  TPAAVRELV-LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLE 77

Query: 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVL-NLQRNSLSGN 729
           LS N   G +         L  L+L GN L      +I  L  L  L  L+   L   
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-----DISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 712 NLTALNVLNL-QRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDL 770
              A+  L L    S  G I     +   L  L L       S+ ++L +L +L+  L+L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKK-LEL 78

Query: 771 SKNNFSGEIPPSLGSLLKLERLNISYNQLQG-QVPASLGKLTSLHVLNLSNN 821
           S+N   G +      L  L  LN+S N+L+       L KL  L  L+L N 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 152 GEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE 211
           G+I         L  L++    L  S+   +  L  L  L+L  N++ G +         
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 212 LQKFAASNNMLE--GTIPSSIVLLKSLQILNLANNSLS 247
           L     S N L+   T+   +  L+ L+ L+L N  ++
Sbjct: 97  LTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 49/270 (18%), Positives = 92/270 (34%), Gaps = 35/270 (12%)

Query: 231 VLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG-NIFDGEIPSELNKLAQLEELDL 289
           +L + +       + +   +    S  F +++++L    I    +   L++ ++L+ L L
Sbjct: 67  LLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125

Query: 290 SKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPL 349
               LS  I     +  NL  L LS  +           +  +LQ L             
Sbjct: 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCS---------GFSEFALQTL------------- 163

Query: 350 ELLRCSSLQQLDLS------DNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG-NL 402
            L  CS L +L+LS      +   +  +    + + +L +L     +   S    +    
Sbjct: 164 -LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL-NLSGYRKNLQKSDLSTLVRRC 221

Query: 403 SKLENLFLFD-NMITGKIPVEIGKLQTLSAIYLYD-NQMSGSIPRELTNCSGLTEIDFFG 460
             L +L L D  M+      E  +L  L  + L     +      EL     L  +  FG
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

Query: 461 NHFSGSIPETMGKLKNLVILQLRQNDLSGP 490
               G++      L +L I       ++ P
Sbjct: 282 IVPDGTLQLLKEALPHLQINCSHFTTIARP 311

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 64/333 (19%), Positives = 114/333 (34%), Gaps = 63/333 (18%)

Query: 83  SRDFLNLTSLETL----DLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLN 138
            + +  L S E+L    DL+  +L   +   L   Q +       +     +        
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFR 94

Query: 139 KLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKL 198
              +      +    +   +   ++L+ L++   +L+  I   +    +L  L+L     
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS---- 150

Query: 199 SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSL--SGSIPVELSH 256
                    GC        S   L+ T+ SS      L  LNL+         + V ++H
Sbjct: 151 ---------GCSGF-----SEFALQ-TLLSS---CSRLDELNLSWCFDFTEKHVQVAVAH 192

Query: 257 LF-NLRYLNLLG---NIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN-TQLKNLETL 311
           +   +  LNL G   N+   ++ + + +   L  LDLS + +  +       QL  L+ L
Sbjct: 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252

Query: 312 VLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGEL 371
            LS            C +             +  E  LEL    +L+ L +         
Sbjct: 253 SLS-----------RCYD-------------IIPETLLELGEIPTLKTLQVFGIV----P 284

Query: 372 PRSLDKLEE-LTDLLLNNNSFTGSFPPEIGNLS 403
             +L  L+E L  L +N + FT    P IGN  
Sbjct: 285 DGTLQLLKEALPHLQINCSHFTTIARPTIGNKK 317

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
           SS  +L L  NKL         + + L +L LS N  +       DKL +LT L L+ N 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 391 FTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQ 438
              S P  +   L++L+ L L  N +         +L +L  I+L+ N 
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGF--LNKLQVLRIGD 147
           +S   L+L SN L  L      +L  L  L L  N     +P  + F  L KL +L + +
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGV-FDKLTKLTILYLHE 85

Query: 148 NLLWGEIPPHI-GNLTELRELAIAYCQLNGSIPVEI-GNLKHLTSLDLQMN 196
           N L   +P  +   LT+L+ELA+   QL  S+P  I   L  L  + L  N
Sbjct: 86  NKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 26/129 (20%)

Query: 189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIV-LLKSLQILNLANNSLS 247
           T L+L+ NKL  L         +L K + S N ++ ++P  +   L  L IL L  N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 248 GSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKN 307
            S+P                 +FD        KL QL+EL L  N L      +  +L +
Sbjct: 90  -SLPN---------------GVFD--------KLTQLKELALDTNQLKSVPDGIFDRLTS 125

Query: 308 LETLVLSDN 316
           L+ + L  N
Sbjct: 126 LQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL-GSLL 787
            IPS+         L L  N           +LT+L   L LS+N     +P  +   L 
Sbjct: 25  GIPSSAT------RLELESNKLQSLPHGVFDKLTQLT-KLSLSQNQIQ-SLPDGVFDKLT 76

Query: 788 KLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ 824
           KL  L +  N+LQ        KLT L  L L  N L+
Sbjct: 77  KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 706 IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL-GRLTEL 764
           +P  I +      L L+ N L         +  +L +L LS+N    S+P  +  +LT+L
Sbjct: 22  VPTGIPSSA--TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKL 78

Query: 765 QVILDLSKNNFSGEIPPSL-GSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
             IL L +N     +P  +   L +L+ L +  NQL+        +LTSL  + L  N
Sbjct: 79  T-ILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDN 413
           ++ Q L L DN      P   D+L +LT L L+NN  T   P  +   L++L  L L DN
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88

Query: 414 MITGKIPVEI-GKLQTLSAIYLYDN 437
            +   IP      L++L+ I+L +N
Sbjct: 89  QLKS-IPRGAFDNLKSLTHIWLLNN 112

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 43/236 (18%), Positives = 68/236 (28%), Gaps = 38/236 (16%)

Query: 185 LKHLTSLDLQMNKLS----GLIPEAI-HGCEELQKFAASNNML--EGTIPSSIVLL--KS 235
                 L LQ+N L       + + + H   ++     SNN L   G       L    S
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 236 LQILNLANNSLS----GSIPVELSHLFNLRYLNLLGNIFDGE----IPSELNKLAQLEEL 287
           +  L+L +  L       +  +L     L+ LN+  N         +     +   LE L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 288 DLSKNNLS-------GSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
            L  N LS         +         +   +    A +    +       +L     AR
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRAR 304

Query: 341 NKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKL----EELTDLLLNNNSFT 392
            +          R   L   DL D+      P    +L     E+  LL    S  
Sbjct: 305 VQ----------RHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDN 413
           +  Q+L L++N      P   D L  L  L  N+N  T + P  +   L++L  L L DN
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91

Query: 414 MITGKIPVEI-GKLQTLSAIYLYDN 437
            +   IP      L++L+ IYLY+N
Sbjct: 92  HLKS-IPRGAFDNLKSLTHIYLYNN 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	970
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.03
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.74
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.85

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-92  Score=867.82  Aligned_cols=739  Identities=32%  Similarity=0.474  Sum_probs=533.4

Q ss_pred             HhhcCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCccceEecCCCCCEEEEECCCCCCccc---cccCccCCCCCcE
Q 036729           18 VALGGISTDSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGS---ISRDFLNLTSLET   94 (970)
Q Consensus        18 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~~~~l~~l~~L~~   94 (970)
                      +++++.++|++||++||+++.||. .+++|..++|||+|+||+|+  .+||++|+|+++.+.|.   +++++.++++|+.
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~   81 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES   81 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence            445567889999999999999987 89999888899999999998  68999999999999998   8889999999999


Q ss_pred             EECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCc--CCCCCCCCcEEEccCccCCccCCccc-cCCcccchhhccc
Q 036729           95 LDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPP--EIGFLNKLQVLRIGDNLLWGEIPPHI-GNLTELRELAIAY  171 (970)
Q Consensus        95 L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~L~~n~~~~~~p~~l-~~l~~L~~L~L~~  171 (970)
                      ++++.+.+. .+|..++++++|++|+|++|.+.|.+|.  .++++++|++|++++|.+.+.+|..+ .++++|++|++++
T Consensus        82 l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           82 LFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             cCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence            999988765 3567888899999999999988888887  78888888888888888777766554 5666666666666


Q ss_pred             cccccCCCcc---ccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 036729          172 CQLNGSIPVE---IGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG  248 (970)
Q Consensus       172 ~~~~~~~p~~---l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  248 (970)
                      |++++..|..   ++++++|++|++++|.+++..+                        .  ..+++|++|++++|.+++
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------------------~--~~l~~L~~L~Ls~n~l~~  214 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------------------------V--SRCVNLEFLDVSSNNFST  214 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB------------------------C--TTCTTCCEEECCSSCCCS
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCC------------------------c--ccCCcCCEEECcCCcCCC
Confidence            6666555554   5556666666666665554332                        1  455566666666666665


Q ss_pred             ccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhc
Q 036729          249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL  328 (970)
Q Consensus       249 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  328 (970)
                      .+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+..
T Consensus       215 ~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~  291 (768)
T 3rgz_A          215 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG  291 (768)
T ss_dssp             CCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCT
T ss_pred             CCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHh
Confidence            5554 666666666666666666666666666666666666666666655544  6677777777777777777766654


Q ss_pred             CCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcc-cccccccccccCCcccccCCCCcCCCCcCCCCe
Q 036729          329 NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRS-LDKLEELTDLLLNNNSFTGSFPPEIGNLSKLEN  407 (970)
Q Consensus       329 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  407 (970)
                      .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+.+++    
T Consensus       292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~----  367 (768)
T 3rgz_A          292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS----  367 (768)
T ss_dssp             TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT----
T ss_pred             hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh----
Confidence            3455555555555555555555555666666666666555444433 44445555555555554444444444443    


Q ss_pred             eecccccccccCCccccCCCCCCEEEcccccCCCcCCccccc--CCCCCEEeccccccCCcccccccCCCCccEEeeccc
Q 036729          408 LFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN--CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN  485 (970)
Q Consensus       408 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  485 (970)
                                         ++|++|++++|.+++.+|..+..  +++|++|++++|.+++.+|..+..+++|+.|++++|
T Consensus       368 -------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          368 -------------------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN  428 (768)
T ss_dssp             -------------------TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred             -------------------cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence                               04444444444444444444443  555666666666666666666666666666666666


Q ss_pred             cCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCC
Q 036729          486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP  565 (970)
Q Consensus       486 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  565 (970)
                      .+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+                                       
T Consensus       429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~---------------------------------------  469 (768)
T 3rgz_A          429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE---------------------------------------  469 (768)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC---------------------------------------
T ss_pred             cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce---------------------------------------
Confidence            66666666665655666666555555554444443333322                                       


Q ss_pred             CCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCccc
Q 036729          566 LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA  645 (970)
Q Consensus       566 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~  645 (970)
                              .|++++|.+++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+.++++|+
T Consensus       470 --------~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  541 (768)
T 3rgz_A          470 --------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI  541 (768)
T ss_dssp             --------EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred             --------EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence                    233333333344666777888899999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCcccCCccccccccCccceEEcccCc-CcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCC
Q 036729          646 HLLLSNNELTGTIPFWLGSLQEIGELDLSSNN-FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN  724 (970)
Q Consensus       646 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N  724 (970)
                      +|++++|+++|.+|.++.....+..+++..+. +..................+   .+.+..+..+..++.++.++++.|
T Consensus       542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL---EFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE---ECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             EEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc---ccccccchhhhccccccccccccc
Confidence            99999999999999988877666555443321 11000000000111100001   245566777888889999999999


Q ss_pred             ccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccC
Q 036729          725 SLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP  804 (970)
Q Consensus       725 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p  804 (970)
                      .+.|.+|..+..+++|+.|||++|+++|.+|.+++.++.|+. |||++|.++|.||..++++++|++||||+|+++|.+|
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE-EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE-EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence            999999999999999999999999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             cccCCCCcCcEEecCCCcccccCC--ccccCCCCcccCCCCCCCCCCCCCCCCccCCCccc
Q 036729          805 ASLGKLTSLHVLNLSNNHLQGQLP--LTFSGFPLSSFLGNAKLCGPPLLSCSELSGQKVKR  863 (970)
Q Consensus       805 ~~l~~l~~L~~l~ls~N~l~g~~p--~~~~~~~~~~~~~n~~lc~~~~~~c~~~~~~~~~~  863 (970)
                      ..+..+++|++||+|+|+++|.+|  .+|.+++..+|.||+++||+|...|....+..+.+
T Consensus       698 ~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~  758 (768)
T 3rgz_A          698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH  758 (768)
T ss_dssp             GGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC------
T ss_pred             hHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCC
Confidence            999999999999999999999999  67889999999999999999988998665544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-72  Score=689.94  Aligned_cols=633  Identities=32%  Similarity=0.465  Sum_probs=511.9

Q ss_pred             CEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCc--cccCCCCCcEeecCCCcCcCCCCcCC-CCCCCCcEE
Q 036729           67 HVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPS--ELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVL  143 (970)
Q Consensus        67 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L  143 (970)
                      +++.++++.+++.. ++..+..+++|++|||++|.+.|.+|.  .++++++|++|+|++|.+.+.+|..+ .++++|++|
T Consensus        78 ~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           78 GLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             TCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred             cccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence            34455555555432 447899999999999999999999998  99999999999999999999988876 889999999


Q ss_pred             EccCccCCccCCcc---ccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCccccccccccc
Q 036729          144 RIGDNLLWGEIPPH---IGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNN  220 (970)
Q Consensus       144 ~L~~n~~~~~~p~~---l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n  220 (970)
                      ++++|.+.+..|..   +.++++|++|++++|.+.+..|.  +++++|++|++++|++++.+|. +.++++|++|++++|
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN  233 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred             ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence            99999999888877   88999999999999999887664  8999999999999999998887 999999999999999


Q ss_pred             ccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCC-CCccEEECcCCcCccccc
Q 036729          221 MLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKL-AQLEELDLSKNNLSGSIS  299 (970)
Q Consensus       221 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~  299 (970)
                      .+++.+|..+..+++|++|++++|.+++.+|..  .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|
T Consensus       234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p  311 (768)
T 3rgz_A          234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP  311 (768)
T ss_dssp             CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred             cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence            999999999999999999999999999888875  89999999999999999999988775 999999999999999999


Q ss_pred             cccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCC-CCCEEeCCCCcCCCCCCccccc-
Q 036729          300 LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS-SLQQLDLSDNSFKGELPRSLDK-  377 (970)
Q Consensus       300 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~l~~-  377 (970)
                      ..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|++.+.+|..+.. 
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~  391 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN  391 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred             hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence            99999999999999999999999988666799999999999999989999998887 9999999999999888888776 


Q ss_pred             -ccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEE
Q 036729          378 -LEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEI  456 (970)
Q Consensus       378 -l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  456 (970)
                       +++|+.|++++|.+++.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus       392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence             7889999999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccc
Q 036729          457 DFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK  536 (970)
Q Consensus       457 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  536 (970)
                      ++++|.+++.+|..+..+++|++|++++|++++.+|.++..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCCCcEEEccccccccccC--CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCccc
Q 036729          537 GPLPPSLFQLKKLRIINFSHNKFSGSIY--PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEF  614 (970)
Q Consensus       537 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  614 (970)
                      |.+|..+.....+..+++..+.-.....  ............   -.+.+..+..+..+..+..++++.|.+.|.+|..+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccc---cccccccchhhhccccccccccccceecccCchhh
Confidence            9999888777665554433321000000  000000000000   01223344444445555555555555555555555


Q ss_pred             ccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceE
Q 036729          615 GKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLK  694 (970)
Q Consensus       615 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  694 (970)
                      +.+++|++||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+++|++|||++|+++|.+|..+..+++|++
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             EEccCCcCcccCCc
Q 036729          695 LSLRGNNLSGKIPP  708 (970)
Q Consensus       695 L~L~~N~l~~~~~~  708 (970)
                      |++++|+++|.+|.
T Consensus       709 L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          709 IDLSNNNLSGPIPE  722 (768)
T ss_dssp             EECCSSEEEEECCS
T ss_pred             EECcCCcccccCCC
Confidence            55555555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.7e-59  Score=565.94  Aligned_cols=586  Identities=25%  Similarity=0.257  Sum_probs=294.4

Q ss_pred             cEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhcccc
Q 036729           93 ETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC  172 (970)
Q Consensus        93 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~  172 (970)
                      +.+|.++++++ .+|..+.  +++++|+|++|.+.+..+..++++++|++|++++|.+.+..|..++++++|++|++++|
T Consensus         7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            45666666665 3454443  56666666666666544445666666666666666555554544555555555555544


Q ss_pred             ccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCc
Q 036729          173 QLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV  252 (970)
Q Consensus       173 ~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  252 (970)
                      +                        +++..+..|.++++|++|++++|.+++..|..++.+++|++|++++|.+++..|.
T Consensus        84 ~------------------------l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A           84 E------------------------LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             C------------------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             c------------------------cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence            4                        4444444444555555555555555444445555555666666666666555555


Q ss_pred             cccCCCCCCEEEccCccccccCCcccc--CCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhc--
Q 036729          253 ELSHLFNLRYLNLLGNIFDGEIPSELN--KLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCL--  328 (970)
Q Consensus       253 ~l~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--  328 (970)
                      .+.++++|++|++++|.+++..+..++  .+++|++|++++|.+++..+..+..+++|+.|+++++.+.+.....++.  
T Consensus       140 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l  219 (680)
T 1ziw_A          140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL  219 (680)
T ss_dssp             SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH
T ss_pred             hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh
Confidence            566666666666666666655554443  3466777777777766666666666777777777666554322222210  


Q ss_pred             CCCCCcEEEccCCcCCCCCccccccCCC--CCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCC
Q 036729          329 NNSSLQQLILARNKLSGEFPLELLRCSS--LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLE  406 (970)
Q Consensus       329 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  406 (970)
                      ..++|+.|++++|.+.+..+..+..++.  |++|++++|++.+..|..+.                        .+++|+
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~------------------------~l~~L~  275 (680)
T 1ziw_A          220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA------------------------WLPQLE  275 (680)
T ss_dssp             TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT------------------------TCTTCC
T ss_pred             hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc------------------------Cccccc
Confidence            1244444444444444444444444322  55555555554444444444                        444444


Q ss_pred             eeecccccccccCCccccCCCCCCEEEcccccCCCc-----CC----cccccCCCCCEEeccccccCCcccccccCCCCc
Q 036729          407 NLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGS-----IP----RELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL  477 (970)
Q Consensus       407 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  477 (970)
                      +|++++|.+.+..|..+..+++|++|++++|...+.     +|    ..+..+++|++|++++|.+.+..+..|..+++|
T Consensus       276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  355 (680)
T 1ziw_A          276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL  355 (680)
T ss_dssp             EEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC
T ss_pred             EeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC
Confidence            444444444444444444444444444444332221     11    134445555555555555555555555555555


Q ss_pred             cEEeeccccCCCC--CCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcc
Q 036729          478 VILQLRQNDLSGP--IPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFS  555 (970)
Q Consensus       478 ~~L~L~~n~l~~~--~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  555 (970)
                      ++|++++|.+...  .+..+..+                      ..+.|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus       356 ~~L~Ls~n~~~~~~l~~~~f~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  413 (680)
T 1ziw_A          356 KYLSLSNSFTSLRTLTNETFVSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG  413 (680)
T ss_dssp             CEEECTTCBSCCCEECTTTTGGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cEEECCCCchhhhhcchhhhccc----------------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence            5555555543211  11111111                      01244444444444444444445555555555555


Q ss_pred             ccccccccC--CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCcccc--CCCCcccccCCCCcEEEccCCcCc
Q 036729          556 HNKFSGSIY--PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLT--GNIPSEFGKLTELNFLDLSFNSFT  631 (970)
Q Consensus       556 ~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~n~l~  631 (970)
                      +|.+++.++  .+.++++|++|++++|++++..+..+..+++|+.|++++|.+.  +.+|..|..+++|++|++++|+++
T Consensus       414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~  493 (680)
T 1ziw_A          414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA  493 (680)
T ss_dssp             SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence            555544322  2334444444444444444444444555555555555555544  344555556666666666666666


Q ss_pred             cCCcccCcCcCcccEEEccCCcccCCcc--------ccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCc
Q 036729          632 GQIAPQLSKCAKLAHLLLSNNELTGTIP--------FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLS  703 (970)
Q Consensus       632 ~~~~~~l~~~~~L~~L~L~~n~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  703 (970)
                      +..+..+.++++|++|++++|++++..+        ..+..+++|++|++++|+++...+..|.++++|++|++++|+++
T Consensus       494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  573 (680)
T 1ziw_A          494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN  573 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence            5555555556666666666665553311        12344445555555555554333333444445555555555444


Q ss_pred             ccCCcccccccccceeccCCCccccccchhhh-cccCCcEEECcccccc
Q 036729          704 GKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQ-QCKKLYELRLSENFFT  751 (970)
Q Consensus       704 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~  751 (970)
                      +..+..|..+++|+.|++++|++++..+..+. .+++|+.|++++|++.
T Consensus       574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            43333444444444444444444444444443 3444444444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-59  Score=569.10  Aligned_cols=596  Identities=21%  Similarity=0.225  Sum_probs=360.3

Q ss_pred             eEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCc
Q 036729          189 TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN  268 (970)
Q Consensus       189 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  268 (970)
                      +.++.++++++.. |..+.  +++++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus         7 ~~~~cs~~~L~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQV-PDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSC-CSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCcccc-ccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            4577777777643 33332  56777777777777666666777777777777777776666666666777777777777


Q ss_pred             cccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCc
Q 036729          269 IFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFP  348 (970)
Q Consensus       269 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  348 (970)
                      .+++..+..|+.+++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCH
Confidence            66655555566677777777777766666666666666666666666666554443332 24455555555555444443


Q ss_pred             cccc--cCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccc---
Q 036729          349 LELL--RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEI---  423 (970)
Q Consensus       349 ~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---  423 (970)
                      ..+.  .+++|++|++++|.+.+..                        |..+..+++|+.+++.++.+.+.....+   
T Consensus       163 ~~~~~~~~~~L~~L~L~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~  218 (680)
T 1ziw_A          163 EELDIFANSSLKKLELSSNQIKEFS------------------------PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE  218 (680)
T ss_dssp             HHHGGGTTCEESEEECTTCCCCCBC------------------------TTGGGGSSEECEEECTTCCCHHHHHHHHHHH
T ss_pred             HHhhccccccccEEECCCCcccccC------------------------hhhhhhhhhhhhhhccccccChhhHHHHHHH
Confidence            3322  2344444444444444444                        4444444445555544444332111111   


Q ss_pred             cCCCCCCEEEcccccCCCcCCcccccCCC--CCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccc
Q 036729          424 GKLQTLSAIYLYDNQMSGSIPRELTNCSG--LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL  501 (970)
Q Consensus       424 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L  501 (970)
                      ...++|+.|++++|.+.+..|..+.+++.  |++|++++|.+++..|..|..+++|+.|++++|.+.+..|..+..+++|
T Consensus       219 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  298 (680)
T 1ziw_A          219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV  298 (680)
T ss_dssp             HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred             hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence            02245555555555555555555555433  6666666666655555555566666666666666665555556666666


Q ss_pred             cEEeccCCcccCc-----cC----cchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcc
Q 036729          502 QQIALADNKLSGS-----VP----LTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL  572 (970)
Q Consensus       502 ~~L~Ls~n~l~~~-----~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L  572 (970)
                      +.|++++|...+.     +|    ..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+......       
T Consensus       299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~-------  371 (680)
T 1ziw_A          299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT-------  371 (680)
T ss_dssp             CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC-------
T ss_pred             cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc-------
Confidence            6666655443321     11    2455566666666666666666666666666666666666654321110       


Q ss_pred             cEEECCCCCCCCCCCccccc--CcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCc-ccCcCcCcccEEEc
Q 036729          573 TALDLTNNSFSGPIPSELAM--SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA-PQLSKCAKLAHLLL  649 (970)
Q Consensus       573 ~~L~l~~n~l~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L  649 (970)
                                    ...+..  .++|+.|++++|++++..|..|..+++|++|++++|.+++.+| ..+.++++|++|++
T Consensus       372 --------------~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          372 --------------NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             --------------TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             --------------hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence                          011111  1345555555555555555555555555555555555554433 34555555555555


Q ss_pred             cCCcccCCccccccccCccceEEcccCcCc--CCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccc
Q 036729          650 SNNELTGTIPFWLGSLQEIGELDLSSNNFN--GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS  727 (970)
Q Consensus       650 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  727 (970)
                      ++|++++..+..+..+++|+.|++++|.+.  +.+|..|..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred             CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence            555555555555555555555555555554  345555566666666666666666555555566666666666666655


Q ss_pred             ccc--------chhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcC
Q 036729          728 GNI--------PSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQL  799 (970)
Q Consensus       728 ~~~--------p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l  799 (970)
                      +..        +..+..+++|+.|+|++|+++...+..+.+++.|+. |++++|.+++..+..|.++++|+.|++++|++
T Consensus       518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI-IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce-eECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence            432        224677888888999988888444456888888888 99999999977777789999999999999999


Q ss_pred             ccccCcccC-CCCcCcEEecCCCcccccCC--ccccCC
Q 036729          800 QGQVPASLG-KLTSLHVLNLSNNHLQGQLP--LTFSGF  834 (970)
Q Consensus       800 ~~~~p~~l~-~l~~L~~l~ls~N~l~g~~p--~~~~~~  834 (970)
                      ++..|..+. .+++|+.+++++|++.|.|+  .+|..+
T Consensus       597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             CBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred             CccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence            998888887 78999999999999999998  344443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-55  Score=541.56  Aligned_cols=532  Identities=23%  Similarity=0.224  Sum_probs=351.3

Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCcccc-ccccCCCCCccEEEccCC
Q 036729          238 ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI-SLLNTQLKNLETLVLSDN  316 (970)
Q Consensus       238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n  316 (970)
                      ..+.++++++ .+|.   -.++|++|+|++|.+++..|..|+++++|++|++++|...+.+ |..|.++++|++|++++|
T Consensus         8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            3455555555 3343   3355666666666666555555555555555555555433322 334444444444444444


Q ss_pred             cccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcc--cccccccccccCCcccccCC
Q 036729          317 AFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRS--LDKLEELTDLLLNNNSFTGS  394 (970)
Q Consensus       317 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~  394 (970)
                                               .+.+..|..+..+++|++|++++|.+.+..|..  +..+++|++|++++|.+++.
T Consensus        84 -------------------------~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A           84 -------------------------KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             -------------------------CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             -------------------------cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence                                     444444455557777777788777777655544  67777777777777777655


Q ss_pred             CC-cCCCCcCCCCeeecccccccccCCccccCC--CCCCEEEcccccCCCcCCcccccCCC------CCEEeccccccCC
Q 036729          395 FP-PEIGNLSKLENLFLFDNMITGKIPVEIGKL--QTLSAIYLYDNQMSGSIPRELTNCSG------LTEIDFFGNHFSG  465 (970)
Q Consensus       395 ~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~  465 (970)
                      .+ ..|+++++|++|++++|.+++..+..+..+  ++|+.|+++.|.+.+..|..+..+++      |++|++++|.+++
T Consensus       139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  218 (844)
T 3j0a_A          139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV  218 (844)
T ss_dssp             CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred             ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence            44 356777777777777777776666666655  67777777777777666666555554      6677777766666


Q ss_pred             cccccccCC---CCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcC--CCCceEEccccccccCCC
Q 036729          466 SIPETMGKL---KNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFL--SELYLITLYNNSFKGPLP  540 (970)
Q Consensus       466 ~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~  540 (970)
                      ..+..+...   .+++.+.++.+....               ....+.+.+..+..|.++  ++++.|++++|.+.+..+
T Consensus       219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~  283 (844)
T 3j0a_A          219 DITGNFSNAISKSQAFSLILAHHIMGA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS  283 (844)
T ss_dssp             TTTSGGGGTSCSCCBSEEECCSSCCBC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred             hHHHHHHhhcCcccccceecccccccc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence            555554432   345555554322211               011222333333344433  466667777666666666


Q ss_pred             ccccCCCCCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCC
Q 036729          541 PSLFQLKKLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTE  619 (970)
Q Consensus       541 ~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  619 (970)
                      ..+..+++|+.|++++|.+++..+ .+.++++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..|..+++
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  363 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK  363 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence            666667777777777777665544 4666677777777777777666777777777777777777777666667777777


Q ss_pred             CcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCC-CCCCCCCcceEEEcc
Q 036729          620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVP-AEIGNCSKLLKLSLR  698 (970)
Q Consensus       620 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~  698 (970)
                      |++|++++|.+++.     ..+++|+.|++++|+++. +|..   ..+++.|++++|++.+... ..+..+++|++|+++
T Consensus       364 L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls  434 (844)
T 3j0a_A          364 LQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILN  434 (844)
T ss_dssp             CCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred             CCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence            77777777777642     226677777777777763 3432   4567777777777775422 224467777888888


Q ss_pred             CCcCcccCCc-ccccccccceeccCCCccc-----cccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCC
Q 036729          699 GNNLSGKIPP-EIGNLTALNVLNLQRNSLS-----GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSK  772 (970)
Q Consensus       699 ~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~  772 (970)
                      +|++++..+. .+..+++|+.|++++|.++     +..+..|..+++|+.|+|++|++++.+|..+..++.|+. |+|++
T Consensus       435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~  513 (844)
T 3j0a_A          435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG-LSLNS  513 (844)
T ss_dssp             SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE-EEEES
T ss_pred             CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe-eECCC
Confidence            8877755443 3455677888888888776     344556778888888888888888888888888888887 88888


Q ss_pred             CcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          773 NNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       773 N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      |.+++..|..+.  ++|+.|||++|++++.+|..+.   +|+.+++++|++.|.|+
T Consensus       514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE  564 (844)
T ss_dssp             CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred             CCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence            888877777666  8999999999999999998765   78899999999999998

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.3e-54  Score=516.20  Aligned_cols=533  Identities=20%  Similarity=0.156  Sum_probs=415.2

Q ss_pred             EEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCC
Q 036729          286 ELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN  365 (970)
Q Consensus       286 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n  365 (970)
                      .++.++..++. +|..+.  +.+++|++++|.+++..|..+ ..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus        16 ~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           16 TYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             EEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTS-TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEECCCCCccc-CcCCCC--CcCcEEEccCCccCcCChhHh-ccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            56666665553 333222  356777777777765444433 34667777777777776666666677777777777777


Q ss_pred             cCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCc
Q 036729          366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR  445 (970)
Q Consensus       366 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  445 (970)
                      ++.+..|..+..+++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence            77666666666777777777777776655455666677777777777766653333334466777777777766666666


Q ss_pred             ccccCCCCC--EEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcc-----cCccCcc
Q 036729          446 ELTNCSGLT--EIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKL-----SGSVPLT  518 (970)
Q Consensus       446 ~l~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l-----~~~~~~~  518 (970)
                      .+..+++|+  .|++++|.+.+..|..+.. .+|+.|++++|.   ..+..+..+..+....+....+     ....+..
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~  247 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV  247 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred             hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhH
Confidence            666666666  6666777666655554433 466666666664   1222333333333222222111     1222334


Q ss_pred             hhcCC--CCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCC
Q 036729          519 FRFLS--ELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNL  596 (970)
Q Consensus       519 ~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  596 (970)
                      |..+.  +++.+++++|.+++..+..+..+++|+.|++++|.++.....+..+++|++|++++|.+++..|..+..+++|
T Consensus       248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  327 (606)
T 3t6q_A          248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL  327 (606)
T ss_dssp             GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred             hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence            44443  7899999999999988888999999999999999998655578889999999999999998888899999999


Q ss_pred             CceeccCccccCCCCc-ccccCCCCcEEEccCCcCccCC--cccCcCcCcccEEEccCCcccCCccccccccCccceEEc
Q 036729          597 SRLRLAHNHLTGNIPS-EFGKLTELNFLDLSFNSFTGQI--APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL  673 (970)
Q Consensus       597 ~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  673 (970)
                      ++|++++|.+.+.+|. .+..+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..+..+++|++|++
T Consensus       328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence            9999999999877765 4899999999999999998776  778999999999999999999988999999999999999


Q ss_pred             ccCcCcCCCCC-CCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccc---cchhhhcccCCcEEECcccc
Q 036729          674 SSNNFNGTVPA-EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN---IPSTIQQCKKLYELRLSENF  749 (970)
Q Consensus       674 s~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~Ls~N~  749 (970)
                      ++|++.+..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.   .+..+..+++|+.|++++|+
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            99999987665 488999999999999999999999999999999999999999873   33678999999999999999


Q ss_pred             ccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          750 FTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       750 l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +++..|..++.++.|+. |++++|.+++.+|..+++++.| .|++++|++++..|..+..+++|+++++++|++.|.++
T Consensus       488 l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMMNH-VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCEECTTTTTTCTTCCE-EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cCccChhhhccccCCCE-EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999998 9999999999999999999999 99999999999999999999999999999999999998

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4e-53  Score=506.82  Aligned_cols=537  Identities=21%  Similarity=0.226  Sum_probs=291.2

Q ss_pred             EECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccC
Q 036729           71 LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLL  150 (970)
Q Consensus        71 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~  150 (970)
                      ++.++.+++ .+|..+.  +.+++|||++|.+++..|..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.+
T Consensus        17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            334444444 3444443  3688999999988877788888888888888888888877788888888888888888888


Q ss_pred             CccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccc
Q 036729          151 WGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSI  230 (970)
Q Consensus       151 ~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l  230 (970)
                      .+..|..++++++|++|++++|++++..+..++++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  173 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM  173 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence            77777777777777777777777765555666666677777776666665433333335555555555555544444444


Q ss_pred             cCCCCCc--EEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCc
Q 036729          231 VLLKSLQ--ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNL  308 (970)
Q Consensus       231 ~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  308 (970)
                      +.+++|+  .|++++|.+++..|.                        .+.. .+|++|++++|.   ..+..+..+.++
T Consensus       174 ~~l~~L~~l~L~l~~n~l~~~~~~------------------------~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~  225 (606)
T 3t6q_A          174 SSLQQATNLSLNLNGNDIAGIEPG------------------------AFDS-AVFQSLNFGGTQ---NLLVIFKGLKNS  225 (606)
T ss_dssp             HTTTTCCSEEEECTTCCCCEECTT------------------------TTTT-CEEEEEECTTCS---CHHHHHHHTTTC
T ss_pred             hhhcccceeEEecCCCccCccChh------------------------Hhhh-ccccccccCCch---hHHHHhhhcccc
Confidence            4444444  444444444443333                        2222 234444444432   111111222222


Q ss_pred             cEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCC--CCCEEeCCCCcCCCCCCcccccccccccccC
Q 036729          309 ETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS--SLQQLDLSDNSFKGELPRSLDKLEELTDLLL  386 (970)
Q Consensus       309 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  386 (970)
                      +...+....+.+.            ..        ....+..+..+.  +|+.|++++|.+.+..+..|..+++|+.|++
T Consensus       226 ~l~~l~~~~~~~~------------~~--------~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  285 (606)
T 3t6q_A          226 TIQSLWLGTFEDM------------DD--------EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL  285 (606)
T ss_dssp             EEEEEECCCCTTS------------CC--------CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred             chhheechhhccc------------cc--------cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEec
Confidence            2111111111000            00        000011111111  4555555555555555555555555555555


Q ss_pred             CcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCc-ccccCCCCCEEeccccccCC
Q 036729          387 NNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR-ELTNCSGLTEIDFFGNHFSG  465 (970)
Q Consensus       387 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~  465 (970)
                      ++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+
T Consensus       286 ~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  364 (606)
T 3t6q_A          286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET  364 (606)
T ss_dssp             TTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence            555555 4555556666666666666666655555556666666666666665544443 25556666666666666554


Q ss_pred             cc--cccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCc-chhcCCCCceEEccccccccCCCcc
Q 036729          466 SI--PETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPL-TFRFLSELYLITLYNNSFKGPLPPS  542 (970)
Q Consensus       466 ~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~  542 (970)
                      ..  +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..
T Consensus       365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  444 (606)
T 3t6q_A          365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL  444 (606)
T ss_dssp             EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred             ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence            43  44455555555555555555555555555555555555555555544332 2444444444444444444444444


Q ss_pred             ccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcE
Q 036729          543 LFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNF  622 (970)
Q Consensus       543 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  622 (970)
                      +..+++|+.|++++|.+++..                      +                      ..+..+..+++|++
T Consensus       445 ~~~l~~L~~L~L~~n~l~~~~----------------------~----------------------~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          445 FDGLPALQHLNLQGNHFPKGN----------------------I----------------------QKTNSLQTLGRLEI  480 (606)
T ss_dssp             TTTCTTCCEEECTTCBCGGGE----------------------E----------------------CSSCGGGGCTTCCE
T ss_pred             HhCCCCCCEEECCCCCCCccc----------------------c----------------------ccchhhccCCCccE
Confidence            444444444444433332210                      0                      11233445555555


Q ss_pred             EEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcC
Q 036729          623 LDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL  702 (970)
Q Consensus       623 L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  702 (970)
                      |++++|.+++..|..+..+++|++|++++|++++..|.++..++.| +|++++|++++..|..+..+++|++|++++|++
T Consensus       481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            5555555555555555555555555555555555555555555555 555555555555555555555666666666655


Q ss_pred             cc
Q 036729          703 SG  704 (970)
Q Consensus       703 ~~  704 (970)
                      .+
T Consensus       560 ~c  561 (606)
T 3t6q_A          560 DC  561 (606)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.4e-53  Score=507.51  Aligned_cols=530  Identities=21%  Similarity=0.177  Sum_probs=451.4

Q ss_pred             ccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCC
Q 036729          284 LEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLS  363 (970)
Q Consensus       284 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  363 (970)
                      -++++.+++.++.... .+.  +++++|++++|.+++..+.. +..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        13 ~~~~~c~~~~l~~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPD-DIP--SSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTEEECTTSCCSSCCT-TSC--TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEccCCCcccCCC-CCC--CCcCEEECCCCCcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            3578888888876543 232  78999999999988555444 4458899999999999988888888899999999999


Q ss_pred             CCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccc-cCCccccCCCCCCEEEcccccCCCc
Q 036729          364 DNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITG-KIPVEIGKLQTLSAIYLYDNQMSGS  442 (970)
Q Consensus       364 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~  442 (970)
                      +|.+++..|..|+.+++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++.
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            999988888899999999999999999987777788999999999999999876 5688899999999999999999888


Q ss_pred             CCcccccCCCCC----EEeccccccCCcccccccCCCCccEEeeccccCC-CCCCCcccccccccEEeccCCcccC----
Q 036729          443 IPRELTNCSGLT----EIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS-GPIPASLGYCKRLQQIALADNKLSG----  513 (970)
Q Consensus       443 ~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~Ls~n~l~~----  513 (970)
                      .+..+..+++|+    ++++++|.+++..+..+... +|+.|++++|.++ +..|..+..++.++.+++..+.+.+    
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l  247 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL  247 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence            787777766554    79999999887666666554 8999999999886 4566678888888888876554432    


Q ss_pred             --ccCcchhcCC--CCceEEc-cccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCc
Q 036729          514 --SVPLTFRFLS--ELYLITL-YNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPS  588 (970)
Q Consensus       514 --~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  588 (970)
                        ..+..+..+.  .++.+++ ..+.+.+.+|. +..+++|+.+++++|.+.. ++.+..+++|+.|++++|.+ +.+| 
T Consensus       248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp-  323 (606)
T 3vq2_A          248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFP-  323 (606)
T ss_dssp             SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCC-
T ss_pred             cccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hhhccccccCCEEEcccccC-cccc-
Confidence              1222233333  3455666 67778887777 8889999999999999865 44888899999999999999 6677 


Q ss_pred             ccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC--CcccCcCcCcccEEEccCCcccCCccccccccC
Q 036729          589 ELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ--IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQ  666 (970)
Q Consensus       589 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~  666 (970)
                      .+ .+++|+.|++++|...+..  .+..+++|++|++++|.+++.  ++..+..+++|++|++++|.+++ +|..+..++
T Consensus       324 ~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~  399 (606)
T 3vq2_A          324 TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE  399 (606)
T ss_dssp             CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCT
T ss_pred             cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCC
Confidence            45 8999999999999665544  677999999999999999876  47788999999999999999886 568899999


Q ss_pred             ccceEEcccCcCcCCCC-CCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCcccc-ccchhhhcccCCcEEE
Q 036729          667 EIGELDLSSNNFNGTVP-AEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG-NIPSTIQQCKKLYELR  744 (970)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~  744 (970)
                      +|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|+.|+
T Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  479 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD  479 (606)
T ss_dssp             TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence            99999999999999888 689999999999999999999999999999999999999999998 4788999999999999


Q ss_pred             CccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC-cCcEEecCCCcc
Q 036729          745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT-SLHVLNLSNNHL  823 (970)
Q Consensus       745 Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~-~L~~l~ls~N~l  823 (970)
                      +++|++++.+|..+..++.|+. |++++|.+++.+|..++++++|++||+++|+++ .+|..+..++ +|+++++++|++
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRLQL-LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCE-EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCCCcCCccChhhhcccccCCE-EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence            9999999999999999999998 999999999999999999999999999999999 6777798887 699999999999


Q ss_pred             cccCC
Q 036729          824 QGQLP  828 (970)
Q Consensus       824 ~g~~p  828 (970)
                      .|.++
T Consensus       558 ~c~c~  562 (606)
T 3vq2_A          558 ACICE  562 (606)
T ss_dssp             CCSST
T ss_pred             ccCCc
Confidence            99999

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.2e-54  Score=513.01  Aligned_cols=474  Identities=22%  Similarity=0.280  Sum_probs=257.7

Q ss_pred             ChHHHHHHHHHHhhCCCCC--------CCCCCCCCCCCCCCc---cceEecCCCCCEEEEECCCCCCccccccCccCCCC
Q 036729           23 ISTDSFWLLRIKQELVDPT--------GILENWSARAHMCSW---HGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTS   91 (970)
Q Consensus        23 ~~~~~~~l~~~~~~~~~~~--------~~~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~   91 (970)
                      ...|+.||.++++++.++.        ...++|...++||.|   .||+|+. .+||++|+|++++++|.+|++++++++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~  106 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTE  106 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCcc
Confidence            3468999999999986532        133479888999999   9999985 489999999999999999999999999


Q ss_pred             CcEEECCCCCC------CC------CCCccccCCCCCcEeecCCCcCcCCCCcCCCC-CCCCcEEEcc------------
Q 036729           92 LETLDLSSNSL------TG------LIPSELGQLQNLRILLLYSNSFSGKIPPEIGF-LNKLQVLRIG------------  146 (970)
Q Consensus        92 L~~L~Ls~n~~------~~------~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~-l~~L~~L~L~------------  146 (970)
                      |++|||++|.+      .+      .+|...  +.+|| ++++++.+.+.+|..+.. +..+..+++.            
T Consensus       107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             ceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence            99999999976      33      445444  56677 777777777776665552 1111112221            


Q ss_pred             --------CccCCccCCccccCCcccchhhccccccccC-----------------CCcccc--CCceeeEEEcCCCcCC
Q 036729          147 --------DNLLWGEIPPHIGNLTELRELAIAYCQLNGS-----------------IPVEIG--NLKHLTSLDLQMNKLS  199 (970)
Q Consensus       147 --------~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~-----------------~p~~l~--~l~~L~~L~Ls~n~i~  199 (970)
                              .|.+++ +|..++++++|++|++++|.+++.                 +|..++  ++++|++|++++|++.
T Consensus       184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~  262 (636)
T 4eco_A          184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL  262 (636)
T ss_dssp             CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred             hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence                    233444 444455555555555555554443                 444444  5555555555555555


Q ss_pred             CCCcccccCCcccccccccccc-cCC-CCcccccCC------CCCcEEEccCCcCccccCc--cccCCCCCCEEEccCcc
Q 036729          200 GLIPEAIHGCEELQKFAASNNM-LEG-TIPSSIVLL------KSLQILNLANNSLSGSIPV--ELSHLFNLRYLNLLGNI  269 (970)
Q Consensus       200 ~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~  269 (970)
                      +.+|..|.++++|++|++++|. +++ .+|..++.+      ++|++|++++|+++ .+|.  .++++++|++|++++|.
T Consensus       263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred             ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence            4445445555555555555554 444 444444443      45555555555544 4444  44455555555555555


Q ss_pred             ccccCCccccCCCCccEEECcCCcCccccccccCCCCC-ccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCc
Q 036729          270 FDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKN-LETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFP  348 (970)
Q Consensus       270 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  348 (970)
                      +.|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|.                        
T Consensus       342 l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~------------------------  394 (636)
T 4eco_A          342 LEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN------------------------  394 (636)
T ss_dssp             CEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS------------------------
T ss_pred             Cccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch------------------------
Confidence            544444 4444455555555555444 33444444444 555555554444 3443                        


Q ss_pred             cccccCC--CCCEEeCCCCcCCCCCCcccc-------cccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccC
Q 036729          349 LELLRCS--SLQQLDLSDNSFKGELPRSLD-------KLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKI  419 (970)
Q Consensus       349 ~~~~~~~--~L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  419 (970)
                       .+..++  +|++|++++|.+.+..|..+.       .+++|+.|++++|.++...+..+..+++|++|++++|.++ .+
T Consensus       395 -~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i  472 (636)
T 4eco_A          395 -IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI  472 (636)
T ss_dssp             -CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred             -hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence             332222  444444444444444444443       3344444444444444211112233444444444444444 23


Q ss_pred             CccccC--------CCCCCEEEcccccCCCcCCcccc--cCCCCCEEeccccccCCcccccccCCCCccEEee------c
Q 036729          420 PVEIGK--------LQTLSAIYLYDNQMSGSIPRELT--NCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQL------R  483 (970)
Q Consensus       420 ~~~~~~--------l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------~  483 (970)
                      |.....        +++|++|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|+.|++      +
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls  550 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ  550 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred             CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence            322111        114555555555554 3444443  45555555555555554 4444555555555555      3


Q ss_pred             cccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccc
Q 036729          484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFK  536 (970)
Q Consensus       484 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  536 (970)
                      +|.+.+.+|..+..+++|+.|++++|++ +.+|..+.  ++|+.|++++|++.
T Consensus       551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            4555555666666666666666666666 44444433  56666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.5e-52  Score=495.84  Aligned_cols=519  Identities=21%  Similarity=0.180  Sum_probs=342.0

Q ss_pred             CCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEE
Q 036729          258 FNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI  337 (970)
Q Consensus       258 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  337 (970)
                      +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+. .+++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC-CcccCCEEE
Confidence            3444444444444444444444444444444444444444444444444444444444444433333222 233333334


Q ss_pred             ccCCcCCCCCccccccCCCCCEEeCCCCcCCC-CCCcccccccccccccCCcccccCCCCcCCCCcCCCC----eeeccc
Q 036729          338 LARNKLSGEFPLELLRCSSLQQLDLSDNSFKG-ELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLE----NLFLFD  412 (970)
Q Consensus       338 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~  412 (970)
                      +++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..++.+.+|+    +|++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            44444433444445567777777777777765 4566666666666666666666655555555555443    566666


Q ss_pred             ccccccCCccccCCCCCCEEEcccccCC-CcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCC
Q 036729          413 NMITGKIPVEIGKLQTLSAIYLYDNQMS-GSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPI  491 (970)
Q Consensus       413 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  491 (970)
                      |.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+...        +.       .+....
T Consensus       191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------l~-------~~~~~~  254 (606)
T 3vq2_A          191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN--------LE-------IFEPSI  254 (606)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC--------CS-------CCCGGG
T ss_pred             CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc--------cc-------ccChHH
Confidence            66654433333322 5555555555554 2334445555555555544333221100        00       000001


Q ss_pred             CCcccccccccEEec-cCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCC
Q 036729          492 PASLGYCKRLQQIAL-ADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSN  570 (970)
Q Consensus       492 ~~~l~~~~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  570 (970)
                      +..+..+ .++.+++ ..+.+.+..|. +..+++|+.+++++|.+.. +| .+..+++|+.|++++|.+ +.++.+ .++
T Consensus       255 ~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~  328 (606)
T 3vq2_A          255 MEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLP  328 (606)
T ss_dssp             GTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCC-CCS
T ss_pred             hhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccC-CCC
Confidence            1111111 3444555 45555555555 6666666666666666643 23 566667777777777777 455555 677


Q ss_pred             cccEEECCCCCCCCCCCcccccCcCCCceeccCccccCC--CCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEE
Q 036729          571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN--IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLL  648 (970)
Q Consensus       571 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~  648 (970)
                      +|+.|++++|...+..  .+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+++ +|..+..+++|++|+
T Consensus       329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD  405 (606)
T ss_dssp             SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEE
T ss_pred             ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeE
Confidence            7777777777544333  456778888888888888765  47788888999999999998886 457888899999999


Q ss_pred             ccCCcccCCcc-ccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc-cCCcccccccccceeccCCCcc
Q 036729          649 LSNNELTGTIP-FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG-KIPPEIGNLTALNVLNLQRNSL  726 (970)
Q Consensus       649 L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~~N~l  726 (970)
                      +++|++.+..| ..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  485 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL  485 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence            99999988877 678889999999999999998888889999999999999999987 4788889999999999999999


Q ss_pred             ccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCC-CCCEEeCCCCcCccccC
Q 036729          727 SGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL-KLERLNISYNQLQGQVP  804 (970)
Q Consensus       727 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~-~L~~L~ls~N~l~~~~p  804 (970)
                      ++..|..+..+++|+.|++++|++++.+|..+..++.|+. ||+++|.++ .+|..+..++ +|++|++++|.+.+..+
T Consensus       486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST-LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE-EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE-EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9988889999999999999999999988999999999998 999999998 6777788887 59999999999987554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-52  Score=507.72  Aligned_cols=479  Identities=21%  Similarity=0.230  Sum_probs=297.8

Q ss_pred             CChHHHHHHHHHHhhCCCCCCCCCCCCCCC-----CC--CCc------------cceEecCCCCCEEEEECCCCCCcccc
Q 036729           22 GISTDSFWLLRIKQELVDPTGILENWSARA-----HM--CSW------------HGVTCSDDQKHVVGLNLSSSGLSGSI   82 (970)
Q Consensus        22 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~~~~   82 (970)
                      +..+|+.||++||+++.+|     +|....     +|  |.|            .||+|+. .+||+.|+|++++++|.+
T Consensus       266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEE
T ss_pred             cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcC
Confidence            3457999999999999876     685433     55  999            9999985 689999999999999999


Q ss_pred             ccCccCCCCCcEEEC-CCCCCCCCCCccc---------------------------------------------------
Q 036729           83 SRDFLNLTSLETLDL-SSNSLTGLIPSEL---------------------------------------------------  110 (970)
Q Consensus        83 ~~~l~~l~~L~~L~L-s~n~~~~~~p~~l---------------------------------------------------  110 (970)
                      |++|+++++|++||| ++|.++|..|...                                                   
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            999999999999999 8887766533211                                                   


Q ss_pred             cCCCCCcEeecCC--CcCcCCCCcCCCCCCCCcEEEccCccCCc-----------------cCCcccc--CCcccchhhc
Q 036729          111 GQLQNLRILLLYS--NSFSGKIPPEIGFLNKLQVLRIGDNLLWG-----------------EIPPHIG--NLTELRELAI  169 (970)
Q Consensus       111 ~~l~~L~~L~Ls~--n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~L~~L~L  169 (970)
                      .....++.+.+..  |.+++ +|..++++++|++|+|++|.+++                 .+|..++  ++++|++|+|
T Consensus       420 ~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L  498 (876)
T 4ecn_A          420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL  498 (876)
T ss_dssp             CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             ccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence            1112233333333  66666 77777777777777777777776                 2666655  6666666666


Q ss_pred             cccccccCCCccccCCceeeEEEcCCCc-CCC-CCcccccCCc-------ccccccccccccCCCCcc--cccCCCCCcE
Q 036729          170 AYCQLNGSIPVEIGNLKHLTSLDLQMNK-LSG-LIPEAIHGCE-------ELQKFAASNNMLEGTIPS--SIVLLKSLQI  238 (970)
Q Consensus       170 ~~~~~~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~  238 (970)
                      ++|.+.+.+|..++++++|++|++++|+ +++ .+|..+.+++       +|++|++++|.++ .+|.  .++.+++|+.
T Consensus       499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~  577 (876)
T 4ecn_A          499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL  577 (876)
T ss_dssp             ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred             cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence            6666666666666666666666666665 665 5555444443       6666666666666 5555  5666666666


Q ss_pred             EEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCC-ccEEECcCCcCccccccccCCCCC--ccEEEccC
Q 036729          239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQ-LEELDLSKNNLSGSISLLNTQLKN--LETLVLSD  315 (970)
Q Consensus       239 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~  315 (970)
                      |++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++.  |+.|++++
T Consensus       578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~  653 (876)
T 4ecn_A          578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY  653 (876)
T ss_dssp             EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCS
T ss_pred             EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcC
Confidence            666666665 555 5566666666666666665 55555666665 666666666655 44444444432  66666666


Q ss_pred             CcccCCCchhhh----cCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccc
Q 036729          316 NAFTGSIPIKFC----LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSF  391 (970)
Q Consensus       316 n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  391 (970)
                      |.+.+.+|...+    ...++|+.|++++|.+....+..+..+++|+.|+|++|++. .+|..+....            
T Consensus       654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~------------  720 (876)
T 4ecn_A          654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK------------  720 (876)
T ss_dssp             SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT------------
T ss_pred             CcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc------------
Confidence            666554442211    01234555555555554222222234455555555555444 2222211100            


Q ss_pred             cCCCCcCCCCcCCCCeeecccccccccCCcccc--CCCCCCEEEcccccCCCcCCcccccCCCCCEEeccc------ccc
Q 036729          392 TGSFPPEIGNLSKLENLFLFDNMITGKIPVEIG--KLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFG------NHF  463 (970)
Q Consensus       392 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~------n~l  463 (970)
                          +..+.++++|+.|++++|.++ .+|..+.  .+++|+.|++++|.+++ +|..+.++++|+.|++++      |.+
T Consensus       721 ----~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          721 ----DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             ----TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             ----cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence                001123346777777777766 5666665  67777777777777766 566666777777777755      666


Q ss_pred             CCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccc
Q 036729          464 SGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNS  534 (970)
Q Consensus       464 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  534 (970)
                      .+.+|..+..+++|+.|++++|.+ +.+|..+.  ++|+.|++++|++....+..+.....+..+.+..|.
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence            777777777777777777777777 56666544  577777777777766555555443334444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.7e-51  Score=501.82  Aligned_cols=532  Identities=21%  Similarity=0.187  Sum_probs=323.8

Q ss_pred             EEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcccc-CccccCCCCCCEEEccCc
Q 036729          190 SLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI-PVELSHLFNLRYLNLLGN  268 (970)
Q Consensus       190 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n  268 (970)
                      ..|.++++++....    -.++|++|++++|.+++..|..+..+++|++|+|++|...+.+ |..|.++++|++|+|++|
T Consensus         8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            56667777765532    3456777777777777666677777777777777777554444 556677777777777777


Q ss_pred             cccccCCccccCCCCccEEECcCCcCccccccc--cCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCC
Q 036729          269 IFDGEIPSELNKLAQLEELDLSKNNLSGSISLL--NTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGE  346 (970)
Q Consensus       269 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~  346 (970)
                      .+.+..|.+|+++++|++|+|++|.+++..+..  +..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+.
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            777666777777777777777777766644433  666667777777766666554433344455555555555555555


Q ss_pred             CccccccC--CCCCEEeCCCCcCCCCCCcccccccc------cccccCCcccccCCCCcCCCCc---CCCCeeecccccc
Q 036729          347 FPLELLRC--SSLQQLDLSDNSFKGELPRSLDKLEE------LTDLLLNNNSFTGSFPPEIGNL---SKLENLFLFDNMI  415 (970)
Q Consensus       347 ~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l  415 (970)
                      .+..+..+  ++|+.|+++.|.+.+..|..+..+.+      |+.|++++|.+++..+..+...   ++++.+.+..+..
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            55555544  55555555555555554444443333      4445555544444443333221   2333333332211


Q ss_pred             cccCCccccCCCCCCEEEcccccCCCcCCcccccC--CCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCC
Q 036729          416 TGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNC--SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA  493 (970)
Q Consensus       416 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  493 (970)
                      ...               +..+.+.+.....+.++  ++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..|.
T Consensus       244 ~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  308 (844)
T 3j0a_A          244 GAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE  308 (844)
T ss_dssp             BCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred             ccc---------------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence            100               01122222223333333  5677777777777776677777777777777777777777777


Q ss_pred             cccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCccc
Q 036729          494 SLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLT  573 (970)
Q Consensus       494 ~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~  573 (970)
                      .|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.    ..+++|+
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~L~  384 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIP  384 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC----SSCCSCS
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc----cCCCCcc
Confidence            777777777777777777777777777777777777777777766666677777777777777776532    2255667


Q ss_pred             EEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC-cccccCCCCcEEEccCCcCccCCcc-cCcCcCcccEEEccC
Q 036729          574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP-SEFGKLTELNFLDLSFNSFTGQIAP-QLSKCAKLAHLLLSN  651 (970)
Q Consensus       574 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~~~~L~~L~L~~  651 (970)
                      .|++++|+++. +|..   ..+++.+++++|++++... ..+..+++|++|++++|++++..+. .+..+++|+.|++++
T Consensus       385 ~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~  460 (844)
T 3j0a_A          385 DIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE  460 (844)
T ss_dssp             EEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred             hhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence            77777776663 2322   3456667777776664321 2244667777777777777654332 244566677777777


Q ss_pred             Cccc-----CCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCcc
Q 036729          652 NELT-----GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSL  726 (970)
Q Consensus       652 n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l  726 (970)
                      |.++     +..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+.  ++|+.|++++|++
T Consensus       461 N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL  538 (844)
T ss_dssp             CCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred             CccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence            7665     33344556666666666666666666666666666666666666666655555444  5666666666666


Q ss_pred             ccccchhhhcccCCcEEECcccccccc
Q 036729          727 SGNIPSTIQQCKKLYELRLSENFFTGS  753 (970)
Q Consensus       727 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~  753 (970)
                      ++..|..+   .+|+.|++++|++.+.
T Consensus       539 ~~~~~~~~---~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          539 LAPNPDVF---VSLSVLDITHNKFICE  562 (844)
T ss_dssp             CCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred             CCCChhHh---CCcCEEEecCCCcccc
Confidence            66666544   2456666666666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-48  Score=458.26  Aligned_cols=487  Identities=21%  Similarity=0.211  Sum_probs=344.1

Q ss_pred             CCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecc
Q 036729          332 SLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLF  411 (970)
Q Consensus       332 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  411 (970)
                      +++.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            44445555555444444455555566666666665555555555556666666666665555445556666666666666


Q ss_pred             cccccccCCccccCCCCCCEEEcccccCCC-cCCcccccCCCCCEEeccccccCCcccccccCCCCc----cEEeecccc
Q 036729          412 DNMITGKIPVEIGKLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL----VILQLRQND  486 (970)
Q Consensus       412 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~L~~n~  486 (970)
                      +|.+++..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++|    +.+++++|.
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence            666554444445666666666666666554 345566666666666666666665555555555555    566666666


Q ss_pred             CCCCCCCcccccccccEEeccCCcccC-ccCcchhcCCCCceEEccccccc------cCCCccccCCC--CCcEEEcccc
Q 036729          487 LSGPIPASLGYCKRLQQIALADNKLSG-SVPLTFRFLSELYLITLYNNSFK------GPLPPSLFQLK--KLRIINFSHN  557 (970)
Q Consensus       487 l~~~~~~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~--~L~~L~ls~n  557 (970)
                      +++..+..+..+ +|+.|++++|.... ..+..+..++.++...+....+.      ......+..+.  .++.++++++
T Consensus       189 l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          189 MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             ceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence            665555555444 56666666654322 23344455555554444322221      11111222222  2455566655


Q ss_pred             -ccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCc
Q 036729          558 -KFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA  635 (970)
Q Consensus       558 -~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~  635 (970)
                       .+.+..+ .+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|.  ..+++|++|++++|.+.+..+
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCC
T ss_pred             hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccccc
Confidence             4444433 4556677777777777776 366667777 8888888888887 4554  477888999999988887665


Q ss_pred             ccCcCcCcccEEEccCCcccCCc--cccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC-ccccc
Q 036729          636 PQLSKCAKLAHLLLSNNELTGTI--PFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP-PEIGN  712 (970)
Q Consensus       636 ~~l~~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~  712 (970)
                      .  ..+++|++|++++|.+++..  |..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+..
T Consensus       343 ~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~  419 (570)
T 2z63_A          343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS  419 (570)
T ss_dssp             C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred             c--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc
Confidence            4  67888999999999887654  67788889999999999998876554 8889999999999999987766 46888


Q ss_pred             ccccceeccCCCccccccchhhhcccCCcEEECcccccc-ccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCE
Q 036729          713 LTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT-GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLER  791 (970)
Q Consensus       713 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~  791 (970)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..++.|+. |++++|.+++..|..++++++|++
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-LDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE-EECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE-EECCCCccccCChhhhhcccCCCE
Confidence            999999999999999999999999999999999999998 689999999999998 999999999999999999999999


Q ss_pred             EeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          792 LNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       792 L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      |++++|++++..|..+..+++|++|++++|+++|.+|
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            9999999999999999999999999999999999999

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-46  Score=444.29  Aligned_cols=519  Identities=20%  Similarity=0.175  Sum_probs=298.3

Q ss_pred             CcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccc
Q 036729           92 LETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAY  171 (970)
Q Consensus        92 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~  171 (970)
                      .++++.++.+++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+.+..|..++++++|++|++++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            345666666665 4555443  4677888888877766666777777777777777777665556666666666666666


Q ss_pred             cccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccC
Q 036729          172 CQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIP  251 (970)
Q Consensus       172 ~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  251 (970)
                      |.+++..|..++++++|++|++++|++++..+..++++++|++|++++|.+++.                       .+|
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-----------------------~lp  142 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLP  142 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-----------------------CCC
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee-----------------------cCh
Confidence            666655555666666666666666666555444444444555444444444431                       234


Q ss_pred             ccccCCCCCCEEEccCccccccCCccccCCCCc----cEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhh
Q 036729          252 VELSHLFNLRYLNLLGNIFDGEIPSELNKLAQL----EELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFC  327 (970)
Q Consensus       252 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  327 (970)
                      ..++++++|++|++++|.+.+..+..++.+++|    ++|++++|.+.+..+..+... +|+.|++++|...........
T Consensus       143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~  221 (570)
T 2z63_A          143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI  221 (570)
T ss_dssp             GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred             hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhh
Confidence            444444555555555554444444444444444    555555555555555444433 455555555533221111112


Q ss_pred             cCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCe
Q 036729          328 LNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLEN  407 (970)
Q Consensus       328 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  407 (970)
                      ..++.++...+....+.        ....++.          .....+..++++                      .++.
T Consensus       222 ~~l~~l~~~~l~~~~~~--------~~~~l~~----------~~~~~~~~l~~l----------------------~l~~  261 (570)
T 2z63_A          222 QGLAGLEVHRLVLGEFR--------NEGNLEK----------FDKSALEGLCNL----------------------TIEE  261 (570)
T ss_dssp             HTTTTCEEEEEEEEECC--------CCSSCEE----------CCTTTTGGGGGS----------------------EEEE
T ss_pred             cCccccceeeecccccc--------Cchhhhh----------cchhhhcccccc----------------------chhh
Confidence            22333333222211110        0000000          001111111111                      1333


Q ss_pred             eecccc-cccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeecccc
Q 036729          408 LFLFDN-MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQND  486 (970)
Q Consensus       408 L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  486 (970)
                      ++++++ .+.+..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.
T Consensus       262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~  336 (570)
T 2z63_A          262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK  336 (570)
T ss_dssp             EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred             hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence            444444 344444444555555555555555544 244445555 5666666666555 3332  345566666666666


Q ss_pred             CCCCCCCcccccccccEEeccCCcccCcc--CcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccC
Q 036729          487 LSGPIPASLGYCKRLQQIALADNKLSGSV--PLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY  564 (970)
Q Consensus       487 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  564 (970)
                      +.+..+.  ..+++|+.|++++|.+++..  +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+   
T Consensus       337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~---  410 (570)
T 2z63_A          337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ---  410 (570)
T ss_dssp             SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES---
T ss_pred             ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc---
Confidence            6554443  45666666666666665443  44555566666666666655543333 5555555555555555443   


Q ss_pred             CCCCCCcccEEECCCCCCCCCCC-cccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCc-cCCcccCcCcC
Q 036729          565 PLTGSNSLTALDLTNNSFSGPIP-SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFT-GQIAPQLSKCA  642 (970)
Q Consensus       565 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~~~  642 (970)
                                          ..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..++
T Consensus       411 --------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          411 --------------------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             --------------------CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             --------------------ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence                                333 34556666777777777777667777777778888888888776 56777778888


Q ss_pred             cccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCc
Q 036729          643 KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPP  708 (970)
Q Consensus       643 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  708 (970)
                      +|++|++++|++++..|.++..+++|++|++++|++++..|..|..+++|++|++++|++++..|.
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            888888888888877777888888888888888888877777788888888888888888876654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.8e-47  Score=453.74  Aligned_cols=458  Identities=20%  Similarity=0.270  Sum_probs=306.2

Q ss_pred             CCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcC------CC------CCCcccccccccccccCCcccccCCCCcC
Q 036729          331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSF------KG------ELPRSLDKLEELTDLLLNNNSFTGSFPPE  398 (970)
Q Consensus       331 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l------~~------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  398 (970)
                      .+++.|+++++.+.|.+|..++.+++|++|+|++|.+      .+      .+|...  +..|+ ++++++.+.+..|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            3566666666666666677777777888888877754      22      223222  44555 677777776666655


Q ss_pred             CCC-cCCCCeeecccccccccCCccccCCCCCCEEEcc--cccCCCcCCcccccCCCCCEEeccccccCCc---------
Q 036729          399 IGN-LSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLY--DNQMSGSIPRELTNCSGLTEIDFFGNHFSGS---------  466 (970)
Q Consensus       399 l~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---------  466 (970)
                      +.. +..+..+++....+.      ......++.+.+.  .|++++ +|..++++++|++|++++|.+++.         
T Consensus       158 ~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            542 222222222221111      0111222222222  456666 666677777777777777777664         


Q ss_pred             --------cccccc--CCCCccEEeeccccCCCCCCCcccccccccEEeccCCc-ccC-ccCcchhcC------CCCceE
Q 036729          467 --------IPETMG--KLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK-LSG-SVPLTFRFL------SELYLI  528 (970)
Q Consensus       467 --------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L  528 (970)
                              +|..++  .+++|++|++++|.+.+.+|..+..+++|+.|++++|+ +++ .+|..+..+      ++|+.|
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L  310 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII  310 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence                    677766  77777777777777777777777777777777777777 776 677766655      777777


Q ss_pred             EccccccccCCCc--cccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcC-CCceeccCcc
Q 036729          529 TLYNNSFKGPLPP--SLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN-LSRLRLAHNH  605 (970)
Q Consensus       529 ~l~~n~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~  605 (970)
                      ++++|.++ .+|.  .+..+++|+.|++++|.++|.++.+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.
T Consensus       311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred             ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence            77777777 5666  677777777777777777766666666666777777777666 56666777777 7777777777


Q ss_pred             ccCCCCcccccCC--CCcEEEccCCcCccCCcccCc-------CcCcccEEEccCCcccCCccccccccCccceEEcccC
Q 036729          606 LTGNIPSEFGKLT--ELNFLDLSFNSFTGQIAPQLS-------KCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN  676 (970)
Q Consensus       606 l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~-------~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  676 (970)
                      ++ .+|..+..++  +|++|++++|.+++.+|..+.       .+++|++|++++|+++...+..+..+++|++|++++|
T Consensus       389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred             Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence            76 5666666544  677777777777777776666       6667777777777777443344455777777777777


Q ss_pred             cCcCCCCCC-CCCC-------CcceEEEccCCcCcccCCcccc--cccccceeccCCCccccccchhhhcccCCcEEECc
Q 036729          677 NFNGTVPAE-IGNC-------SKLLKLSLRGNNLSGKIPPEIG--NLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS  746 (970)
Q Consensus       677 ~l~~~~p~~-l~~l-------~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  746 (970)
                      +++ .+|.. +...       ++|++|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..+++|+.|+|+
T Consensus       468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             CCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            777 34433 2222       26666666666666 4555554  66666666666666665 56666666666666666


Q ss_pred             cccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729          747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ  826 (970)
Q Consensus       747 ~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~  826 (970)
                      +|+                   ++++|.+.+.+|..++++++|++|+|++|++ +.+|..+.  ++|++||+++|++.+.
T Consensus       545 ~N~-------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          545 NQR-------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SCB-------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCc-------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            664                   3478999999999999999999999999999 78898876  7999999999977653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5e-46  Score=439.88  Aligned_cols=486  Identities=18%  Similarity=0.186  Sum_probs=294.5

Q ss_pred             EEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcc
Q 036729          310 TLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN  389 (970)
Q Consensus       310 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  389 (970)
                      ..+.+++.++ .+|..+   .++|++|++++|.+++..+..+..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus         9 ~c~~~~~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   84 (549)
T 2z81_A            9 VCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN   84 (549)
T ss_dssp             EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             eEECCCCccc-cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence            3566666666 556544   356777777777777666666777777777777777777666666667777777777777


Q ss_pred             cccCCCCcCCCCcCCCCeeecccccccc-cCCccccCCCCCCEEEcccccCCCcCC-cccccCCCCCEEeccccccCCcc
Q 036729          390 SFTGSFPPEIGNLSKLENLFLFDNMITG-KIPVEIGKLQTLSAIYLYDNQMSGSIP-RELTNCSGLTEIDFFGNHFSGSI  467 (970)
Q Consensus       390 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~  467 (970)
                      .+++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..
T Consensus        85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A           85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence            7666555556666677777777666664 244556666666666666666433333 45666666666666666666666


Q ss_pred             cccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCcc--C-cchhcCCCCceEEccccccccCCC----
Q 036729          468 PETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSV--P-LTFRFLSELYLITLYNNSFKGPLP----  540 (970)
Q Consensus       468 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~----  540 (970)
                      |..+..+++|+.|+++.|.+.......+..+++|+.|++++|++++..  + .....+++|+.|++++|.+.+..+    
T Consensus       165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  244 (549)
T 2z81_A          165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL  244 (549)
T ss_dssp             TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred             hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence            666666666666666666654322222234566666666666665532  1 112334555666666655544322    


Q ss_pred             ccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccC-----CCCcccc
Q 036729          541 PSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTG-----NIPSEFG  615 (970)
Q Consensus       541 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~p~~~~  615 (970)
                      ..+..+++|+.+++++|.+.+....                 .......+..+.+++.+++.++.+..     .++..+.
T Consensus       245 ~~~~~~~~L~~l~l~~~~~~~~~~~-----------------~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~  307 (549)
T 2z81_A          245 KLLRYILELSEVEFDDCTLNGLGDF-----------------NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS  307 (549)
T ss_dssp             GGGGGCTTCCEEEEESCEEECCSCC-----------------CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred             HHhhhhccccccccccccccccccc-----------------cccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence            2223445555566655555432110                 00001122334444555554444321     1122223


Q ss_pred             cCCCCcEEEccCCcCccCCcccC-cCcCcccEEEccCCcccCCcc---ccccccCccceEEcccCcCcCCCC--CCCCCC
Q 036729          616 KLTELNFLDLSFNSFTGQIAPQL-SKCAKLAHLLLSNNELTGTIP---FWLGSLQEIGELDLSSNNFNGTVP--AEIGNC  689 (970)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~~~~~l-~~~~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l  689 (970)
                      ..++|++|++++|.+. .+|..+ ..+++|++|++++|++++.+|   ..++.+++|++|++++|++++..+  ..+..+
T Consensus       308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l  386 (549)
T 2z81_A          308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL  386 (549)
T ss_dssp             HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred             hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence            3455666666666655 333333 355666666666666655443   224556666666666666654322  235556


Q ss_pred             CcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhh
Q 036729          690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILD  769 (970)
Q Consensus       690 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~  769 (970)
                      ++|++|++++|+++ .+|..+..+++|++|++++|++++. |..+  .++|+.|++++|++++.+    ..++.|+. |+
T Consensus       387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~-L~  457 (549)
T 2z81_A          387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQE-LY  457 (549)
T ss_dssp             TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCE-EE
T ss_pred             CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcE-EE
Confidence            66666666666666 4555566666666666666666532 2222  246777777777777643    35667776 88


Q ss_pred             CCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       770 ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +++|.++ .+|. .+.+++|++|||++|++++.+|..+..+++|++|++++|++.|.+|
T Consensus       458 Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          458 ISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            8888887 6665 4678999999999999999999999999999999999999999999

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-45  Score=437.16  Aligned_cols=482  Identities=18%  Similarity=0.222  Sum_probs=266.0

Q ss_pred             CCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCc
Q 036729           53 MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPP  132 (970)
Q Consensus        53 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~  132 (970)
                      .|.|.|+ |+.          ++++++ .+|..+.  ++|++|+|++|.+++..|..++++++|++|++++|.+.+..|.
T Consensus         3 ~C~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4999998 863          233444 3444433  6777777777777776677777777777777777777766667


Q ss_pred             CCCCCCCCcEEEccCccCCccCCccccCCcccchhhcccccccc-CCCccccCCceeeEEEcCCCcC-CCCCcccccCCc
Q 036729          133 EIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKL-SGLIPEAIHGCE  210 (970)
Q Consensus       133 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~Ls~n~i-~~~~~~~l~~l~  210 (970)
                      .++.+++|++|++++|.+.+..|..++++++|++|++++|.+++ ..|..++++++|++|++++|++ ....+..|.+++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            77777777777777777776666667777777777777777765 3456677777777777777763 333345677777


Q ss_pred             ccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccC--C-ccccCCCCccEE
Q 036729          211 ELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEI--P-SELNKLAQLEEL  287 (970)
Q Consensus       211 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~-~~l~~l~~L~~L  287 (970)
                      +|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..  | .....+++|+.|
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence            7777777777777777777777777777777777665322222345677777777777776532  1 122345667777


Q ss_pred             ECcCCcCccccc----cccCCCCCccEEEccCCcccCCCch-----hhhcCCCCCcEEEccCCcCCCC-----Ccccccc
Q 036729          288 DLSKNNLSGSIS----LLNTQLKNLETLVLSDNAFTGSIPI-----KFCLNNSSLQQLILARNKLSGE-----FPLELLR  353 (970)
Q Consensus       288 ~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~  353 (970)
                      ++++|.+++..+    ..+..+++|+.+++++|.+.+....     ......++++.+++.++.+...     .+..+..
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence            777766654433    2234556666777766665542110     1112344555555555544321     1111223


Q ss_pred             CCCCCEEeCCCCcCCCCCCccc-ccccccccccCCcccccCCCC---cCCCCcCCCCeeecccccccccCC--ccccCCC
Q 036729          354 CSSLQQLDLSDNSFKGELPRSL-DKLEELTDLLLNNNSFTGSFP---PEIGNLSKLENLFLFDNMITGKIP--VEIGKLQ  427 (970)
Q Consensus       354 ~~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~  427 (970)
                      .++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+|   ..++.+++|++|++++|.+++..+  ..+..++
T Consensus       309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            345555555555544 333333 345555555555555544332   224445555555555555543221  2244455


Q ss_pred             CCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEecc
Q 036729          428 TLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALA  507 (970)
Q Consensus       428 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  507 (970)
                      +|++|++++|+++ .+|..+..+++|++|++++|.++.. |..+  .++|+.|++++|++++..    ..+++|+.|+++
T Consensus       388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls  459 (549)
T 2z81_A          388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYIS  459 (549)
T ss_dssp             TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence            5555555555444 3444444445555555555544421 1111  134444555555444321    234444444444


Q ss_pred             CCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcccccc
Q 036729          508 DNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKF  559 (970)
Q Consensus       508 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  559 (970)
                      +|+++ .+|. ...+++|+.|++++|.+++..|..+..+++|+.+++++|.+
T Consensus       460 ~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             SSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             CCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            44444 2222 22344444444444444444444444444444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=431.68  Aligned_cols=454  Identities=22%  Similarity=0.234  Sum_probs=326.1

Q ss_pred             cEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccc
Q 036729          334 QQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN  413 (970)
Q Consensus       334 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  413 (970)
                      +.+++++|.+++ +|..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            457777777763 444443  67777777777777666666777777777777777776665666777777777777777


Q ss_pred             cccccCCccccCCCCCCEEEcccccCCC-cCCcccccCCCCCEEeccccccCCcccccccCCCCc--cEEeeccccC--C
Q 036729          414 MITGKIPVEIGKLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL--VILQLRQNDL--S  488 (970)
Q Consensus       414 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~  488 (970)
                      .++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  +.|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            766 34443  56666677776666665 355666666666666666666654   234455555  6666666666  5


Q ss_pred             CCCCCcccccc-cccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccc-------cc
Q 036729          489 GPIPASLGYCK-RLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNK-------FS  560 (970)
Q Consensus       489 ~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-------l~  560 (970)
                      +..|..+..+. ....+++++|.+.+.++.                       ..+..+++|+.+++++|.       +.
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~  210 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILD-----------------------VSVKTVANLELSNIKCVLEDNKCSYFL  210 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCC-----------------------CCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred             ccccccccccccceEEEEeccCcchhhhhh-----------------------hhhhcccceeeccccccccccccceee
Confidence            55555554443 222344455544433322                       233344555555555554       34


Q ss_pred             cccCCCCCCCcccEEECCCCCCCCCCCccc---ccCcCCCceeccCccccCCCCccc-----ccCCCCcEEEccCCcCcc
Q 036729          561 GSIYPLTGSNSLTALDLTNNSFSGPIPSEL---AMSRNLSRLRLAHNHLTGNIPSEF-----GKLTELNFLDLSFNSFTG  632 (970)
Q Consensus       561 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~  632 (970)
                      +.++.+..+++|+.|++++|.+++..+..+   ...++|++|++++|+++|.+|..+     ..+++|+.+++++|.+  
T Consensus       211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--  288 (520)
T 2z7x_B          211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--  288 (520)
T ss_dssp             HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred             cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence            444444555555555555555443222111   124578888999888888888887     8899999999999988  


Q ss_pred             CCc-ccCcCc---CcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc--cC
Q 036729          633 QIA-PQLSKC---AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG--KI  706 (970)
Q Consensus       633 ~~~-~~l~~~---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~  706 (970)
                      .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++.+|..+..+++|++|++++|++++  .+
T Consensus       289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  366 (520)
T 2z7x_B          289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI  366 (520)
T ss_dssp             CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred             ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence            344 344443   67999999999886542  12678999999999999999889999999999999999999987  55


Q ss_pred             CcccccccccceeccCCCccccccch-hhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccC
Q 036729          707 PPEIGNLTALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS  785 (970)
Q Consensus       707 ~~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~  785 (970)
                      |..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+.  +.|+. |++++|.++ .+|..+..
T Consensus       367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~-L~Ls~N~l~-~ip~~~~~  442 (520)
T 2z7x_B          367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKV-LDLHSNKIK-SIPKQVVK  442 (520)
T ss_dssp             HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCE-EECCSSCCC-CCCGGGGG
T ss_pred             hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCE-EECCCCccc-ccchhhhc
Confidence            67788999999999999999985665 488899999999999999998888775  67887 999999999 88988889


Q ss_pred             CCCCCEEeCCCCcCccccCcc-cCCCCcCcEEecCCCcccccCC
Q 036729          786 LLKLERLNISYNQLQGQVPAS-LGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       786 l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +++|++|++++|++++ +|.. +..+++|++|++++|+++|.++
T Consensus       443 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            9999999999999995 6655 8999999999999999999998

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-44  Score=435.15  Aligned_cols=444  Identities=20%  Similarity=0.276  Sum_probs=313.2

Q ss_pred             CCCCEEeCCCCcCCCCCCcccccccccccccC-CcccccCCCCcCCCCc-CCCC-----eeec----------ccccccc
Q 036729          355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLL-NNNSFTGSFPPEIGNL-SKLE-----NLFL----------FDNMITG  417 (970)
Q Consensus       355 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l-~~L~-----~L~L----------~~n~l~~  417 (970)
                      .+++.|+|+++.+.|.+|..++.+++|+.|+| ++|.+.|..|...... ..+.     .+..          ....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46888888888888888888888888888888 7787776633221111 0000     0000          0000000


Q ss_pred             c-----------CCccccCCCCCCEEEccc--ccCCCcCCcccccCCCCCEEeccccccCC-----------------cc
Q 036729          418 K-----------IPVEIGKLQTLSAIYLYD--NQMSGSIPRELTNCSGLTEIDFFGNHFSG-----------------SI  467 (970)
Q Consensus       418 ~-----------~~~~~~~l~~L~~L~l~~--n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~  467 (970)
                      .           .+........++.+.+..  |.+++ +|..+.++++|++|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            0           011111222333333433  66666 77778888888888888888877                 37


Q ss_pred             ccccc--CCCCccEEeeccccCCCCCCCcccccccccEEeccCCc-ccC-ccCcchhcCC-------CCceEEccccccc
Q 036729          468 PETMG--KLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNK-LSG-SVPLTFRFLS-------ELYLITLYNNSFK  536 (970)
Q Consensus       468 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~l~  536 (970)
                      |..++  .+++|+.|++++|.+.+.+|..+..+++|+.|++++|+ +++ .+|..+..++       +|+.|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            77766  88888888888888888888888888888888888887 877 7777666554       8888888888888


Q ss_pred             cCCCc--cccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcC-CCceeccCccccCCCCcc
Q 036729          537 GPLPP--SLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRN-LSRLRLAHNHLTGNIPSE  613 (970)
Q Consensus       537 ~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~p~~  613 (970)
                       .+|.  .+..+++|+.|++++|.++ .++.+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~  637 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI  637 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchh
Confidence             6776  7888888888888888887 5557777888888888888887 67777777777 888888888877 67777


Q ss_pred             cccCCC--CcEEEccCCcCccCCccc---Cc--CcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCC
Q 036729          614 FGKLTE--LNFLDLSFNSFTGQIAPQ---LS--KCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI  686 (970)
Q Consensus       614 ~~~l~~--L~~L~Ls~n~l~~~~~~~---l~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  686 (970)
                      +..++.  |+.|++++|.+++.+|..   +.  .+.+|+.|++++|.++...+..+..+++|+.|+|++|+++ .+|..+
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            766654  888888888887765532   22  3347888888888887433333446778888888888877 444433


Q ss_pred             CC--------CCcceEEEccCCcCcccCCcccc--cccccceeccCCCccccccchhhhcccCCcEEECccccccccCch
Q 036729          687 GN--------CSKLLKLSLRGNNLSGKIPPEIG--NLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA  756 (970)
Q Consensus       687 ~~--------l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  756 (970)
                      ..        |++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+       
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-------  787 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------  787 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------
T ss_pred             hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------
Confidence            22        237777777777777 5666665  67777777777777776 56667777777777777664       


Q ss_pred             hhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       757 ~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                                  ++++|.+.+.+|..++++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++...-+
T Consensus       788 ------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          788 ------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             ------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             ------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence                        4466888888888888889999999999988 78888766  588899999998765543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-42  Score=419.50  Aligned_cols=516  Identities=20%  Similarity=0.183  Sum_probs=318.5

Q ss_pred             CCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEcc
Q 036729          235 SLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLS  314 (970)
Q Consensus       235 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  314 (970)
                      ++++|||++|++++..+.+|.++++|++|+|++|++++..+.+|+++++|++|+|++|++++..+.+|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            45566666666655444555555555555555555555555555555555555555555554444444444444444444


Q ss_pred             CCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCC-CCcccccccccccccCCcccccC
Q 036729          315 DNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE-LPRSLDKLEELTDLLLNNNSFTG  393 (970)
Q Consensus       315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~  393 (970)
                      +|.+                         ++..+..+..+++|++|++++|.+.+. .|..+..+++|++|++++|++++
T Consensus       133 ~N~l-------------------------~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          133 ETNL-------------------------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TSCC-------------------------CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCcC-------------------------CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            4433                         333333455666777777777766542 34555555555555555555554


Q ss_pred             CCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCC-ccccccc
Q 036729          394 SFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG-SIPETMG  472 (970)
Q Consensus       394 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~  472 (970)
                      ..+..+..+.+++.                    ....++++.|.+....+..+ ....+..+++.+|.... ..+..+.
T Consensus       188 ~~~~~l~~L~~l~~--------------------~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~  246 (635)
T 4g8a_A          188 IYCTDLRVLHQMPL--------------------LNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQ  246 (635)
T ss_dssp             ECGGGGHHHHTCTT--------------------CCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred             cccccccchhhhhh--------------------hhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhc
Confidence            44444433332221                    11234444444443222222 22234455555554332 2223344


Q ss_pred             CCCCccEEeeccccC------CCCCCCcccccccccEEeccCCcccCc---cCcchhcCCCCceEEccccccccCCCccc
Q 036729          473 KLKNLVILQLRQNDL------SGPIPASLGYCKRLQQIALADNKLSGS---VPLTFRFLSELYLITLYNNSFKGPLPPSL  543 (970)
Q Consensus       473 ~l~~L~~L~L~~n~l------~~~~~~~l~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  543 (970)
                      .+..++...+..+..      .......+.....+...++..+.....   .+..+.....++.+.+.++.+...     
T Consensus       247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----  321 (635)
T 4g8a_A          247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-----  321 (635)
T ss_dssp             TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-----
T ss_pred             CCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-----
Confidence            555555554433222      112222333444444444433322211   122233334444444444433322     


Q ss_pred             cCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEE
Q 036729          544 FQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFL  623 (970)
Q Consensus       544 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  623 (970)
                                          ..+....+++.|++.+|.+.+..+.   .+..|+.+++.+|.....  .....+++|+.|
T Consensus       322 --------------------~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L  376 (635)
T 4g8a_A          322 --------------------KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFL  376 (635)
T ss_dssp             --------------------GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEE
T ss_pred             --------------------cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccc
Confidence                                1223334455555555554433322   244566667766665432  234567778888


Q ss_pred             EccCCcCcc--CCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCC-CCCCCCCcceEEEccCC
Q 036729          624 DLSFNSFTG--QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVP-AEIGNCSKLLKLSLRGN  700 (970)
Q Consensus       624 ~Ls~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N  700 (970)
                      ++++|.+..  ..+..+..+.+|+.+++..|.... .+..+..+++|+.+++++|+.....+ ..+..+++++.++++.|
T Consensus       377 ~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n  455 (635)
T 4g8a_A          377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  455 (635)
T ss_dssp             ECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred             hhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            888887753  344555667788888888887664 34456778888888888877766544 45778888899999999


Q ss_pred             cCcccCCcccccccccceeccCCCcc-ccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC
Q 036729          701 NLSGKIPPEIGNLTALNVLNLQRNSL-SGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI  779 (970)
Q Consensus       701 ~l~~~~~~~l~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i  779 (970)
                      .+.+..+..+..+++|+.|++++|++ .+..|..|..+++|+.|+|++|++++.+|..|.++++|+. |+|++|.+++..
T Consensus       456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~-L~Ls~N~l~~l~  534 (635)
T 4g8a_A          456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLD  534 (635)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECTTSCCCBCC
T ss_pred             ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE-EECCCCcCCCCC
Confidence            98888888888888999999998874 4567788889999999999999999988999999999998 999999999999


Q ss_pred             CccccCCCCCCEEeCCCCcCccccCcccCCC-CcCcEEecCCCcccccCC
Q 036729          780 PPSLGSLLKLERLNISYNQLQGQVPASLGKL-TSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       780 p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~g~~p  828 (970)
                      |..|+++++|++|||++|+|++..|..+..+ ++|++|++++|++.|.|.
T Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999999999999999999998 689999999999999998

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.8e-44  Score=418.26  Aligned_cols=452  Identities=20%  Similarity=0.228  Sum_probs=283.3

Q ss_pred             EEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCc
Q 036729           69 VGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN  148 (970)
Q Consensus        69 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n  148 (970)
                      +.+|+++++++ .+|..+.  ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..++.+++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            36888888888 4666665  88999999999998877788899999999999999988777888888999999999999


Q ss_pred             cCCccCCccccCCcccchhhcccccccc-CCCccccCCceeeEEEcCCCcCCCCCcccccCCccc--cccccccccc--C
Q 036729          149 LLWGEIPPHIGNLTELRELAIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEEL--QKFAASNNML--E  223 (970)
Q Consensus       149 ~~~~~~p~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L--~~L~l~~n~l--~  223 (970)
                      .+. .+|..  .+++|++|++++|++++ .+|..++++++|++|++++|++++   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            886 56655  78888888888888876 467788888888888888888775   356666666  8888888877  6


Q ss_pred             CCCcccccCCC-CCcEEEccCCcCccccCc-cccCCCCCCEEEccCcc-------ccccCCccccCCCCccEEECcCCcC
Q 036729          224 GTIPSSIVLLK-SLQILNLANNSLSGSIPV-ELSHLFNLRYLNLLGNI-------FDGEIPSELNKLAQLEELDLSKNNL  294 (970)
Q Consensus       224 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~-------~~~~~~~~l~~l~~L~~L~L~~n~l  294 (970)
                      +..|..+..+. ....+++++|.+.+.++. .+..+++|+.|++++|.       +.+.+| .++.+++|++|++++|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            67777666655 334566677776655543 45667777777777775       554444 566677777777776665


Q ss_pred             ccccccccC---CCCCccEEEccCCcccCCCchhhh----cCCCCCcEEEccCCcCCCCCc-cccccC---CCCCEEeCC
Q 036729          295 SGSISLLNT---QLKNLETLVLSDNAFTGSIPIKFC----LNNSSLQQLILARNKLSGEFP-LELLRC---SSLQQLDLS  363 (970)
Q Consensus       295 ~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~-~~~~~~---~~L~~L~Ls  363 (970)
                      ++.....+.   ..++|++|++++|.+.|.+|..++    ..+++|+.+++++|.+  .+| ..+..+   .+|+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence            543221110   134666666666666666665552    3345555555555554  222 222222   345555555


Q ss_pred             CCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCC--
Q 036729          364 DNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG--  441 (970)
Q Consensus       364 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--  441 (970)
                      +|.+....                          .+..+++|++|++++|.+++.+|..++.+++|++|++++|++++  
T Consensus       311 ~n~l~~~~--------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  364 (520)
T 2z7x_B          311 GTRMVHML--------------------------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS  364 (520)
T ss_dssp             SSCCCCCC--------------------------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred             CCcccccc--------------------------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence            55443221                          11344455555555555554444445555555555555555544  


Q ss_pred             cCCcccccCCCCCEEeccccccCCcccc-cccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchh
Q 036729          442 SIPRELTNCSGLTEIDFFGNHFSGSIPE-TMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFR  520 (970)
Q Consensus       442 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~  520 (970)
                      .+|..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+.
T Consensus       365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~  441 (520)
T 2z7x_B          365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV  441 (520)
T ss_dssp             HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred             cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence            3334455555555555555555543333 244555555555555555544444332  45566666666655 4444444


Q ss_pred             cCCCCceEEccccccccCCCccccCCCCCcEEEcccccccc
Q 036729          521 FLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSG  561 (970)
Q Consensus       521 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  561 (970)
                      .+++|+.|++++|.++...+..+..+++|+.+++++|.+++
T Consensus       442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            56666666666666654333335566666666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.7e-42  Score=414.24  Aligned_cols=541  Identities=21%  Similarity=0.160  Sum_probs=302.5

Q ss_pred             EEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccc
Q 036729           94 TLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQ  173 (970)
Q Consensus        94 ~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~  173 (970)
                      +.+-++.+++ .+|..+.  +++++|||++|.+++..|..|.++++|++|||++|.+.+..|..|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            3455555665 4665443  478888888888886666678888888888888887766555566666666666666666


Q ss_pred             cccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCcc
Q 036729          174 LNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVE  253 (970)
Q Consensus       174 ~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  253 (970)
                      +++..+..|+++++|++|++++|++++..+..|+++++|++|++++|.+++.                       ..|..
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----------------------~~~~~  168 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPEY  168 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-----------------------CCchh
Confidence            6554445556666666666666666555444455555555555555544331                       22334


Q ss_pred             ccCCCCCCEEEccCccccccCCccccCCCC----ccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcC
Q 036729          254 LSHLFNLRYLNLLGNIFDGEIPSELNKLAQ----LEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLN  329 (970)
Q Consensus       254 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  329 (970)
                      +..+++|++|++++|++.+..+..+..+.+    ...++++.|.+....+..+. ...++.+++.+|.....++......
T Consensus       169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~  247 (635)
T 4g8a_A          169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQG  247 (635)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHT
T ss_pred             hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcC
Confidence            444444444555444444444444433322    22455566655544443332 2344555555554433333333323


Q ss_pred             CCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeee
Q 036729          330 NSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLF  409 (970)
Q Consensus       330 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  409 (970)
                      ...++...+..+.....                  ..+.......+..+..+....+..+....                
T Consensus       248 l~~l~~~~l~~~~~~~~------------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~----------------  293 (635)
T 4g8a_A          248 LAGLEVHRLVLGEFRNE------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDY----------------  293 (635)
T ss_dssp             TTTCEEEEEEEECCTTS------------------CCCSCCCTTTTGGGGGSEEEEEEEECCCS----------------
T ss_pred             Ccccccccccccccccc------------------cccccccccccccccchhhhhhhhhhhcc----------------
Confidence            33333333222111100                  00111111122222222222222111110                


Q ss_pred             cccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCC
Q 036729          410 LFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSG  489 (970)
Q Consensus       410 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  489 (970)
                           .....+..+....+++.+.+.++.+...  ..+..+..++.|++.+|.+.+..+.   .++.|+.+++..|.+..
T Consensus       294 -----~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~  363 (635)
T 4g8a_A          294 -----YLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN  363 (635)
T ss_dssp             -----CEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC
T ss_pred             -----cccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC
Confidence                 0001112233334444444444443322  1233344555555555555433222   23445555555555433


Q ss_pred             CCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCC
Q 036729          490 PIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGS  569 (970)
Q Consensus       490 ~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  569 (970)
                      ..  ....+++|+.++++.|.+...                      +..+..+..+.+|+.++++.+........+..+
T Consensus       364 ~~--~~~~l~~L~~L~ls~n~l~~~----------------------~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l  419 (635)
T 4g8a_A          364 AF--SEVDLPSLEFLDLSRNGLSFK----------------------GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL  419 (635)
T ss_dssp             BC--CCCBCTTCCEEECCSSCCBEE----------------------EECCHHHHSCSCCCEEECCSCSEEEECSCCTTC
T ss_pred             Cc--ccccccccccchhhccccccc----------------------cccccchhhhhhhhhhhcccccccccccccccc
Confidence            21  223444555555555544321                      112233334455555555555544333333344


Q ss_pred             CcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCC-CcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEE
Q 036729          570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNI-PSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLL  648 (970)
Q Consensus       570 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~  648 (970)
                      ++|+.++++.+.                        ..... +..|..+++++.++++.|.+.+..+..+..+++|+.|+
T Consensus       420 ~~L~~l~l~~~~------------------------~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~  475 (635)
T 4g8a_A          420 EQLEHLDFQHSN------------------------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  475 (635)
T ss_dssp             TTCCEEECTTSE------------------------EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             ccccchhhhhcc------------------------ccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence            444444444333                        32222 23456777788888888888877777778888888888


Q ss_pred             ccCCcc-cCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccc
Q 036729          649 LSNNEL-TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS  727 (970)
Q Consensus       649 L~~n~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  727 (970)
                      +++|.+ .+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|+++
T Consensus       476 Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~  555 (635)
T 4g8a_A          476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  555 (635)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred             hhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence            888874 3456777888888888888888888888888888888999999998888888888888889999999999999


Q ss_pred             cccchhhhcc-cCCcEEECcccccccc
Q 036729          728 GNIPSTIQQC-KKLYELRLSENFFTGS  753 (970)
Q Consensus       728 ~~~p~~~~~l-~~L~~L~Ls~N~l~~~  753 (970)
                      +..|..+..+ ++|+.|+|++|+|++.
T Consensus       556 ~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          556 TSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             BCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            8888888887 6799999999998864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-42  Score=407.51  Aligned_cols=460  Identities=22%  Similarity=0.210  Sum_probs=315.0

Q ss_pred             CCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeee
Q 036729          330 NSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLF  409 (970)
Q Consensus       330 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  409 (970)
                      +...+.+++++|.+++ +|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            4445778888887775 444332  6788888888888777777777777888888888877776677777777788888


Q ss_pred             cccccccccCCccccCCCCCCEEEcccccCCC-cCCcccccCCCCCEEeccccccCCcccccccCCCCc--cEEeecccc
Q 036729          410 LFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL--VILQLRQND  486 (970)
Q Consensus       410 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~  486 (970)
                      +++|.++ .+|..  .+++|++|++++|++++ .+|..+.++++|++|++++|.+++.   .+..+++|  +.|++++|.
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence            8877777 45544  67777777777777766 3456777777777777777777653   33444444  777777777


Q ss_pred             C--CCCCCCcccccc-cccEEeccCCcccCccCc-chhcCCCCceEEcccccc-----ccCCCccccCCCCCcEEEcccc
Q 036729          487 L--SGPIPASLGYCK-RLQQIALADNKLSGSVPL-TFRFLSELYLITLYNNSF-----KGPLPPSLFQLKKLRIINFSHN  557 (970)
Q Consensus       487 l--~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~ls~n  557 (970)
                      +  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|..     .+. ...+..++.++.++++++
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCC
Confidence            7  666666665543 112445666666554432 334455555555555531     111 112334444444444444


Q ss_pred             ccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCccc-----ccCCCCcEEEccCCcCcc
Q 036729          558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEF-----GKLTELNFLDLSFNSFTG  632 (970)
Q Consensus       558 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~  632 (970)
                      .+.+.                  .+.+ ++.. ...++|++|++++|.++|.+|..+     ..++.|+.++++.|.+  
T Consensus       260 ~l~~~------------------~~~~-~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--  317 (562)
T 3a79_B          260 ETTWK------------------CSVK-LFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--  317 (562)
T ss_dssp             EECHH------------------HHHH-HHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--
T ss_pred             cCcHH------------------HHHH-HHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--
Confidence            43321                  0000 1111 122367777777777776677665     5666666666666665  


Q ss_pred             CCc-ccCcC---cCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCccc--C
Q 036729          633 QIA-PQLSK---CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK--I  706 (970)
Q Consensus       633 ~~~-~~l~~---~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~  706 (970)
                      .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++|++++.+|..+..+++|++|++++|++++.  +
T Consensus       318 ~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  395 (562)
T 3a79_B          318 LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV  395 (562)
T ss_dssp             SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred             ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence            233 22221   256888888888775332  125678888888888888888888888888888888888888863  3


Q ss_pred             CcccccccccceeccCCCccccccc-hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccC
Q 036729          707 PPEIGNLTALNVLNLQRNSLSGNIP-STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS  785 (970)
Q Consensus       707 ~~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~  785 (970)
                      |..+..+++|++|++++|++++.+| ..+..+++|+.|++++|++++.+|..+.  +.|+. |++++|.++ .+|..+.+
T Consensus       396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~-L~L~~N~l~-~ip~~~~~  471 (562)
T 3a79_B          396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV-LDLHNNRIM-SIPKDVTH  471 (562)
T ss_dssp             HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE-EECCSSCCC-CCCTTTTS
T ss_pred             hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE-EECCCCcCc-ccChhhcC
Confidence            4567888889999999998888444 4577888999999999999888887665  67777 999999998 78888889


Q ss_pred             CCCCCEEeCCCCcCccccCcc-cCCCCcCcEEecCCCcccccCC
Q 036729          786 LLKLERLNISYNQLQGQVPAS-LGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       786 l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +++|++|++++|++++ +|.. +..+++|++|++++|++.|.||
T Consensus       472 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          472 LQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            9999999999999995 6655 9999999999999999999998

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.8e-42  Score=372.66  Aligned_cols=293  Identities=31%  Similarity=0.461  Sum_probs=269.7

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC--ccceEecCCC--CCEEEEECCCCCCcc--ccccCccCCCCCcE
Q 036729           21 GGISTDSFWLLRIKQELVDPTGILENWSARAHMCS--WHGVTCSDDQ--KHVVGLNLSSSGLSG--SISRDFLNLTSLET   94 (970)
Q Consensus        21 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~   94 (970)
                      .|.++|++||++||+++.+|. .+++|..+++||.  |.||+|+..+  ++|+.|+|+++.++|  .+|..+.++++|++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~   80 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence            588999999999999998875 7889987889999  9999998654  899999999999999  89999999999999


Q ss_pred             EECCC-CCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccc
Q 036729           95 LDLSS-NSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQ  173 (970)
Q Consensus        95 L~Ls~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~  173 (970)
                      |+|++ |.+.+.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|+
T Consensus        81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence            99995 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCccccCCc-eeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCc
Q 036729          174 LNGSIPVEIGNLK-HLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV  252 (970)
Q Consensus       174 ~~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  252 (970)
                      +++.+|..+++++ +|++|++++|++++..|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|.
T Consensus       161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  239 (313)
T 1ogq_A          161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK  239 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred             ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence            9999999999998 999999999999999999998887 99999999999988888899999999999999999877665


Q ss_pred             cccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCc
Q 036729          253 ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNA  317 (970)
Q Consensus       253 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  317 (970)
                       +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus       240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence             788899999999999999888999999999999999999998888876 778888888888887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.7e-41  Score=396.53  Aligned_cols=458  Identities=19%  Similarity=0.167  Sum_probs=337.7

Q ss_pred             CCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCccccccccccc
Q 036729          304 QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTD  383 (970)
Q Consensus       304 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  383 (970)
                      .+...+++++++|.+++ +|..+   .+++++|++++|.+.+..+..+..+++|++|++++|++++..|..|..+++|++
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            34556899999999994 88765   389999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCCCCcCCCCcCCCCeeecccccccc-cCCccccCCCCCCEEEcccccCCCcCCcccccCCCC--CEEeccc
Q 036729          384 LLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITG-KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGL--TEIDFFG  460 (970)
Q Consensus       384 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~  460 (970)
                      |++++|.++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+.   .+..+++|  ++|++++
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            999999998 56665  89999999999999987 4568899999999999999999864   45556666  9999999


Q ss_pred             ccc--CCcccccccCCC--CccEEeeccccCCCCCCC-cccccccccEEeccCCccc----CccCcchhcCCCCceEEcc
Q 036729          461 NHF--SGSIPETMGKLK--NLVILQLRQNDLSGPIPA-SLGYCKRLQQIALADNKLS----GSVPLTFRFLSELYLITLY  531 (970)
Q Consensus       461 n~l--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~l~  531 (970)
                      |.+  ++..|..+..+.  .+ .+++++|.+.+.++. .+..+++|+.+++++|...    ......+..++.++.+++.
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             ccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            999  888888887765  33 568889988876654 4667899999999998521    1122356788899999988


Q ss_pred             ccccccCCCcc---ccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCccc-----ccCcCCCceeccC
Q 036729          532 NNSFKGPLPPS---LFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSEL-----AMSRNLSRLRLAH  603 (970)
Q Consensus       532 ~n~l~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~  603 (970)
                      ++.+.+.....   ....++|++|++++|.++|.++                       ..+     ..++.|+.++++.
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip-----------------------~~~~~~~~~~L~~L~~~~~~~  314 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID-----------------------REEFTYSETALKSLMIEHVKN  314 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC-----------------------CCCCCCCSCSCCEEEEEEEEE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc-----------------------chhhhcccccchheehhhccc
Confidence            77765421110   1122366666666666655433                       333     3333344444444


Q ss_pred             ccccCCCC-ccccc---CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCc
Q 036729          604 NHLTGNIP-SEFGK---LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN  679 (970)
Q Consensus       604 n~l~~~~p-~~~~~---l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  679 (970)
                      +.+  .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++|.+++.+|.++..+++|++|++++|+++
T Consensus       315 ~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  390 (562)
T 3a79_B          315 QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK  390 (562)
T ss_dssp             CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred             cee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence            443  233 12211   245677777777665322  1245667777777777777777777777777777777777777


Q ss_pred             CC--CCCCCCCCCcceEEEccCCcCcccCCc-ccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCch
Q 036729          680 GT--VPAEIGNCSKLLKLSLRGNNLSGKIPP-EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA  756 (970)
Q Consensus       680 ~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  756 (970)
                      +.  +|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|+.|++++|+++ .+|.
T Consensus       391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~  467 (562)
T 3a79_B          391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK  467 (562)
T ss_dssp             BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred             CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh
Confidence            53  245567777777777777777764444 466777888888888887776665543  67888888888887 6777


Q ss_pred             hhhhhhhhHhhhhCCCCcccccCCcc-ccCCCCCCEEeCCCCcCccccC
Q 036729          757 DLGRLTELQVILDLSKNNFSGEIPPS-LGSLLKLERLNISYNQLQGQVP  804 (970)
Q Consensus       757 ~l~~l~~L~~~L~ls~N~l~g~ip~~-~~~l~~L~~L~ls~N~l~~~~p  804 (970)
                      .+..++.|+. |++++|.++ .+|.. ++.+++|+.|++++|.+.+..|
T Consensus       468 ~~~~l~~L~~-L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          468 DVTHLQALQE-LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTTSSCCCSE-EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hhcCCCCCCE-EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            7778888887 888888888 45555 8899999999999999987654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.5e-39  Score=369.47  Aligned_cols=354  Identities=22%  Similarity=0.232  Sum_probs=260.0

Q ss_pred             CCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEc
Q 036729          451 SGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITL  530 (970)
Q Consensus       451 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l  530 (970)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+.+.++                       +..|..+++|+.|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-----------------------~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-----------------------NNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------------TTTTTTCTTCCEEEC
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------------cccccccccCCEEeC
Confidence            445555555555555445555555555555555555443221                       233444445555555


Q ss_pred             cccccccCCCccccCCCCCcEEEccccccccccC---CCCCCCcccEEECCCCCCCCCCCcc-cccCcCCCceeccCccc
Q 036729          531 YNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY---PLTGSNSLTALDLTNNSFSGPIPSE-LAMSRNLSRLRLAHNHL  606 (970)
Q Consensus       531 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~Ls~n~l  606 (970)
                      ++|.+.+..|..+..+++|++|++++|.+++..+   .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            5555544445555555555555555555554222   2555666666666666666665654 66777777777777777


Q ss_pred             cCCCCcccccC--CCCcEEEccCCcCccCCccc--------CcCcCcccEEEccCCcccCCcccccccc---CccceEEc
Q 036729          607 TGNIPSEFGKL--TELNFLDLSFNSFTGQIAPQ--------LSKCAKLAHLLLSNNELTGTIPFWLGSL---QEIGELDL  673 (970)
Q Consensus       607 ~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~--------l~~~~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L  673 (970)
                      ++..|..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|++++..|..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            77777666655  67777788777777654433        2355778888888888877777666544   77888888


Q ss_pred             ccCcCcCC----------CCCCCCC--CCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCc
Q 036729          674 SSNNFNGT----------VPAEIGN--CSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY  741 (970)
Q Consensus       674 s~N~l~~~----------~p~~l~~--l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  741 (970)
                      ++|.+.+.          .+..+..  .++|++|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  326 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL  326 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence            87755432          2222333  36899999999999999999999999999999999999999999999999999


Q ss_pred             EEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCC
Q 036729          742 ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN  821 (970)
Q Consensus       742 ~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N  821 (970)
                      .|++++|.+++..|..++.++.|+. |++++|.+++..|..++++++|++|++++|++++..+..+..+++|++|++++|
T Consensus       327 ~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          327 KLNLSQNFLGSIDSRMFENLDKLEV-LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             EEECCSSCCCEECGGGGTTCTTCCE-EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccCCcChhHhcCcccCCE-EECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            9999999999888999999999998 999999999999999999999999999999999988888899999999999999


Q ss_pred             cccccCC
Q 036729          822 HLQGQLP  828 (970)
Q Consensus       822 ~l~g~~p  828 (970)
                      +++|.+|
T Consensus       406 ~l~~~~~  412 (455)
T 3v47_A          406 PWDCSCP  412 (455)
T ss_dssp             CBCCCTT
T ss_pred             CcccCCC
Confidence            9999999

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.7e-39  Score=366.51  Aligned_cols=407  Identities=22%  Similarity=0.257  Sum_probs=190.7

Q ss_pred             CCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCC-------------CCeeecccccccccCC
Q 036729          354 CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSK-------------LENLFLFDNMITGKIP  420 (970)
Q Consensus       354 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-------------L~~L~L~~n~l~~~~~  420 (970)
                      .++|++|++++|.+ +.+|..++.+++|++|++++|.+.+.+|..++++.+             +++|++++|.+++ +|
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence            35556666666666 456666666666666666666666666666665555             4677777777664 23


Q ss_pred             ccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCccccccc
Q 036729          421 VEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKR  500 (970)
Q Consensus       421 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~  500 (970)
                      .   -.++|++|++++|.+++ +|..   +++|++|++++|.+++. +..   .++|++|++++|.+++ +| .+..+++
T Consensus        88 ~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~  154 (454)
T 1jl5_A           88 E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF  154 (454)
T ss_dssp             S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence            2   13567777777777765 4432   35677777777766642 211   1567777777777765 45 4666777


Q ss_pred             ccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCC
Q 036729          501 LQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNN  580 (970)
Q Consensus       501 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n  580 (970)
                      |+.|++++|++++ +|..   ..+|+.|++++|.+++ +| .+..+++|+.|++++|.+++. +..  .++|++|++++|
T Consensus       155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l~~n  225 (454)
T 1jl5_A          155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL--PLSLESIVAGNN  225 (454)
T ss_dssp             CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC--CTTCCEEECCSS
T ss_pred             CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC--cCcccEEECcCC
Confidence            7777777776665 3332   2366666666666665 33 466666666666666666542 211  135666666666


Q ss_pred             CCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccc
Q 036729          581 SFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPF  660 (970)
Q Consensus       581 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~  660 (970)
                      .++ .+| .+..+++|++|++++|++++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|++++. |.
T Consensus       226 ~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~  294 (454)
T 1jl5_A          226 ILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE  294 (454)
T ss_dssp             CCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC
T ss_pred             cCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC
Confidence            665 344 25566666666666666654 3322   2556666666666664 3322   25566666666666542 11


Q ss_pred             cccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCC
Q 036729          661 WLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKL  740 (970)
Q Consensus       661 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  740 (970)
                      .   .++|++|++++|++++. +.   ..++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|
T Consensus       295 ~---~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L  359 (454)
T 1jl5_A          295 L---PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNL  359 (454)
T ss_dssp             C---CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred             c---CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhc
Confidence            1   14566666666666542 11   01356666666666654 3332   3556666666666653 333   34556


Q ss_pred             cEEECccccccc--cCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCcc--ccCcccCCCCcCcEE
Q 036729          741 YELRLSENFFTG--SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG--QVPASLGKLTSLHVL  816 (970)
Q Consensus       741 ~~L~Ls~N~l~~--~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~--~~p~~l~~l~~L~~l  816 (970)
                      +.|++++|++++  .+|.+++.         ++.|.+.|.+|..   +++|+.||+++|++++  .+|.+      ++.|
T Consensus       360 ~~L~L~~N~l~~l~~ip~~l~~---------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L  421 (454)
T 1jl5_A          360 KQLHVEYNPLREFPDIPESVED---------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDL  421 (454)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCE---------EECCC--------------------------------------------
T ss_pred             cEEECCCCCCCcCCCChHHHHh---------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------Hhhe
Confidence            666666666665  45554432         2345555555542   3566666666666665  55543      3344


Q ss_pred             ecCCCcccccCC
Q 036729          817 NLSNNHLQGQLP  828 (970)
Q Consensus       817 ~ls~N~l~g~~p  828 (970)
                      .+.+|.+.+.+|
T Consensus       422 ~~~~~~~~~~~~  433 (454)
T 1jl5_A          422 RMNSERVVDPYE  433 (454)
T ss_dssp             ------------
T ss_pred             eCcCcccCCccc
Confidence            556666665555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.1e-38  Score=362.77  Aligned_cols=374  Identities=21%  Similarity=0.214  Sum_probs=222.4

Q ss_pred             CCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCC-CcCCCCCCCCcEEEccCccCCccCCccccCCcccchhh
Q 036729           90 TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI-PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELA  168 (970)
Q Consensus        90 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~  168 (970)
                      ++|++|||++|.+++..|..++++++|++|++++|.+.+.+ |..+..+++|++|++++|.+.+..|..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            78999999999998888888999999999999999887665 45688899999999999988877788888888888888


Q ss_pred             ccccccccCCCcc--ccCCceeeEEEcCCCcCCCCCccc-ccCCcccccccccccccCCCCcccccCC--CCCcEEEccC
Q 036729          169 IAYCQLNGSIPVE--IGNLKHLTSLDLQMNKLSGLIPEA-IHGCEELQKFAASNNMLEGTIPSSIVLL--KSLQILNLAN  243 (970)
Q Consensus       169 L~~~~~~~~~p~~--l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~L~~  243 (970)
                      +++|++++..+..  ++++++|++|++++|++++..|.. +.++++|++|++++|.+++..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            8888877655444  777777777777777777766654 5666666666666666666555555544  4555566655


Q ss_pred             CcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCC---CCccEEEccCCcccC
Q 036729          244 NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQL---KNLETLVLSDNAFTG  320 (970)
Q Consensus       244 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~  320 (970)
                      |.+.+..+..+..                .....+..+++|++|++++|.+++..+..+...   ++|+.|++++|...+
T Consensus       190 n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  253 (455)
T 3v47_A          190 ITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG  253 (455)
T ss_dssp             CBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred             Ccccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence            5555433222110                000112233444444444444444333332221   344444444443322


Q ss_pred             CCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCC
Q 036729          321 SIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG  400 (970)
Q Consensus       321 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  400 (970)
                      ...               ..+.+....+..+..+                      ..++|+.|++++|.+.+..|..++
T Consensus       254 ~~~---------------~~~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~l~~~~~~~~~  296 (455)
T 3v47_A          254 SSF---------------GHTNFKDPDNFTFKGL----------------------EASGVKTCDLSKSKIFALLKSVFS  296 (455)
T ss_dssp             CCT---------------TCCSSCCCCTTTTGGG----------------------TTSCCCEEECCSSCCCEECTTTTT
T ss_pred             ccc---------------chhhhccCcccccccc----------------------cccCceEEEecCccccccchhhcc
Confidence            100               0001111111111111                      113444444444444444444455


Q ss_pred             CcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEE
Q 036729          401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVIL  480 (970)
Q Consensus       401 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  480 (970)
                      .+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  376 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL  376 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence            55555555555555555555555555555555555555555555555666666666666666665556666666666666


Q ss_pred             eeccccCCCCCCCcccccccccEEeccCCcccCccC
Q 036729          481 QLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVP  516 (970)
Q Consensus       481 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~  516 (970)
                      ++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            666666665555555666666666666666666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.2e-38  Score=357.90  Aligned_cols=411  Identities=25%  Similarity=0.310  Sum_probs=270.2

Q ss_pred             CCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccc-------------cccccCCcccccCCCCc
Q 036729          331 SSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEE-------------LTDLLLNNNSFTGSFPP  397 (970)
Q Consensus       331 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-------------L~~L~L~~n~l~~~~~~  397 (970)
                      +.|+++++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++             +++|++++|.+++ +|.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence            4455555555555 455555556666666666666666666666666555             4888999998875 343


Q ss_pred             CCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCc
Q 036729          398 EIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL  477 (970)
Q Consensus       398 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  477 (970)
                      .   .++|++|++++|.+++ +|..   .++|++|++++|++++. +..   .++|++|++++|.+++ +| .++.+++|
T Consensus        89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L  155 (454)
T 1jl5_A           89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL  155 (454)
T ss_dssp             C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence            2   3689999999999987 6643   48899999999998863 221   2689999999999997 66 59999999


Q ss_pred             cEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcccc
Q 036729          478 VILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN  557 (970)
Q Consensus       478 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n  557 (970)
                      ++|++++|++++ +|..+   .+|+.|++++|++++ +| .+..+++|+.|++++|.+++. |..   .++|+.|++++|
T Consensus       156 ~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n  225 (454)
T 1jl5_A          156 KIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNN  225 (454)
T ss_dssp             CEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSS
T ss_pred             CEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCC
Confidence            999999999986 55543   599999999999998 45 589999999999999999873 332   358999999999


Q ss_pred             ccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCccc
Q 036729          558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ  637 (970)
Q Consensus       558 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~  637 (970)
                      .++ .++.+..+++|+.|++++|++++ +|..   .++|+.|++++|++++ +|..   .++|++|++++|.+++. |. 
T Consensus       226 ~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-  294 (454)
T 1jl5_A          226 ILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-  294 (454)
T ss_dssp             CCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-
T ss_pred             cCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-
Confidence            998 56678899999999999999986 4432   4789999999999986 5543   47899999999999973 21 


Q ss_pred             CcCcCcccEEEccCCcccCCcccccccc-CccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccccc
Q 036729          638 LSKCAKLAHLLLSNNELTGTIPFWLGSL-QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL  716 (970)
Q Consensus       638 l~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L  716 (970)
                      +  .++|++|++++|++++. +    .+ ++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|
T Consensus       295 ~--~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L  359 (454)
T 1jl5_A          295 L--PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNL  359 (454)
T ss_dssp             C--CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred             c--CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhc
Confidence            1  26899999999999862 2    23 589999999999997 5654   5899999999999995 555   47899


Q ss_pred             ceeccCCCcccc--ccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccc--cCCccccCCCCCCEE
Q 036729          717 NVLNLQRNSLSG--NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG--EIPPSLGSLLKLERL  792 (970)
Q Consensus       717 ~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g--~ip~~~~~l~~L~~L  792 (970)
                      ++|++++|++++  .+|..+.+        ++.|.+.|.+|..   ++.|+. ||+++|.++|  .+|.+      ++.|
T Consensus       360 ~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~-L~ls~N~l~~~~~iP~s------l~~L  421 (454)
T 1jl5_A          360 KQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQ-LHVETNPLREFPDIPES------VEDL  421 (454)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------------------------
T ss_pred             cEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCE-EECCCCcCCccccchhh------Hhhe
Confidence            999999999998  67766543        3457788888874   467777 9999999998  67754      5667


Q ss_pred             eCCCCcCccccCcccCCC
Q 036729          793 NISYNQLQGQVPASLGKL  810 (970)
Q Consensus       793 ~ls~N~l~~~~p~~l~~l  810 (970)
                      .+++|.+.+.+|......
T Consensus       422 ~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          422 RMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             ------------------
T ss_pred             eCcCcccCCccccCHHHh
Confidence            889999998887665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.6e-36  Score=345.94  Aligned_cols=375  Identities=20%  Similarity=0.217  Sum_probs=273.2

Q ss_pred             cccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccc
Q 036729          381 LTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFG  460 (970)
Q Consensus       381 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  460 (970)
                      ++..........+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++. |  ++.+++|++|++++
T Consensus        20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~   94 (457)
T 3bz5_A           20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDS   94 (457)
T ss_dssp             HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCS
T ss_pred             HHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcC
Confidence            33333344444545555677888999999999988864 5 688888899999998888874 3  77888888888888


Q ss_pred             cccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCC
Q 036729          461 NHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLP  540 (970)
Q Consensus       461 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  540 (970)
                      |.+++. +  ++.+++|++|++++|.+++. +  +..+++|+.|++++|++++.   .+..+++|+.|++++|...+.+ 
T Consensus        95 N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-  164 (457)
T 3bz5_A           95 NKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-  164 (457)
T ss_dssp             SCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-
T ss_pred             CCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-
Confidence            888875 3  77888888888888888864 3  77888888888888888874   2667788888888888655544 


Q ss_pred             ccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCC
Q 036729          541 PSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL  620 (970)
Q Consensus       541 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  620 (970)
                       .+..+++|+.|++++|.+++.  ++..+++|+.|++++|.+++.   .+..+++|+.|++++|++++ +|  +..+++|
T Consensus       165 -~~~~l~~L~~L~ls~n~l~~l--~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L  235 (457)
T 3bz5_A          165 -DVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL  235 (457)
T ss_dssp             -CCTTCTTCCEEECCSSCCCCC--CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred             -ccccCCcCCEEECCCCcccee--ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence             366777788888888877763  266677777777777777764   26667777777777777776 44  6677777


Q ss_pred             cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC
Q 036729          621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN  700 (970)
Q Consensus       621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  700 (970)
                      ++|++++|++++..   +..+++|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|
T Consensus       236 ~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          236 TYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN  296 (457)
T ss_dssp             SEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC
T ss_pred             CEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCC
Confidence            77777777777643   344566666666654              34567777887777766  467788888888888


Q ss_pred             cCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCC
Q 036729          701 NLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIP  780 (970)
Q Consensus       701 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip  780 (970)
                      ...+.+|.   ..++|+.|++++|             ++|+.|++++|++++. +  ++.++.|+. ||+++|.++|   
T Consensus       297 ~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~-L~l~~N~l~~---  353 (457)
T 3bz5_A          297 TQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKS-LSCVNAHIQD---  353 (457)
T ss_dssp             TTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSE-EECCSSCCCB---
T ss_pred             cccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcE-EECCCCCCCC---
Confidence            87776664   3345556655544             5688888888888873 3  777888887 8888888875   


Q ss_pred             ccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCccc
Q 036729          781 PSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF  831 (970)
Q Consensus       781 ~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~  831 (970)
                           ++.|+.|++++|.++|.     ..+..|..+++++|+++|.+|..+
T Consensus       354 -----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          354 -----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             -----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             -----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence                 24566677888888876     245567778888888888888544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.3e-36  Score=342.37  Aligned_cols=368  Identities=21%  Similarity=0.196  Sum_probs=315.1

Q ss_pred             cCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCc
Q 036729          366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPR  445 (970)
Q Consensus       366 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  445 (970)
                      ...+..+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+++. |  ++.+++|++|++++|.+++. + 
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-  101 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-  101 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence            34455566788999999999999999964 5 689999999999999999974 4  88999999999999999985 3 


Q ss_pred             ccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCC
Q 036729          446 ELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL  525 (970)
Q Consensus       446 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  525 (970)
                       +.++++|++|++++|.+++. +  ++.+++|+.|++++|.+++.   .+..+++|+.|++++|+..+.+  .+..+++|
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence             88999999999999999974 4  88999999999999999984   3788999999999999766665  47889999


Q ss_pred             ceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCcc
Q 036729          526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH  605 (970)
Q Consensus       526 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  605 (970)
                      +.|++++|.+++. |  +..+++|+.|++++|.+++.  ++..+++|+.|++++|++++ +|  +..+++|+.|++++|+
T Consensus       173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred             CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence            9999999999984 3  78899999999999999875  58889999999999999998 45  8889999999999999


Q ss_pred             ccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCC
Q 036729          606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAE  685 (970)
Q Consensus       606 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  685 (970)
                      +++..   ++.+++|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|.+.+.+|. 
T Consensus       245 l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~-  304 (457)
T 3bz5_A          245 LTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC-  304 (457)
T ss_dssp             CSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-
T ss_pred             CCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-
Confidence            99754   567788999998876              36678889999888877  56889999999999998888774 


Q ss_pred             CCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhH
Q 036729          686 IGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQ  765 (970)
Q Consensus       686 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  765 (970)
                        ..++|+.|++++|             ++|++|++++|++++. +  +..+++|+.|++++|++++        ++.|.
T Consensus       305 --~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~  358 (457)
T 3bz5_A          305 --QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVG  358 (457)
T ss_dssp             --TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGG
T ss_pred             --CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccc
Confidence              3456666666655             6789999999999985 3  8889999999999999986        24555


Q ss_pred             hhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCC
Q 036729          766 VILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGK  809 (970)
Q Consensus       766 ~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~  809 (970)
                      . +++++|.++|.     +++..|+.+++++|+++|.+|..+..
T Consensus       359 ~-L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          359 K-IPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             G-SSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             c-ccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            5 88999999987     45677888999999999999987654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.8e-35  Score=335.85  Aligned_cols=347  Identities=28%  Similarity=0.392  Sum_probs=240.2

Q ss_pred             CCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEE
Q 036729          425 KLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQI  504 (970)
Q Consensus       425 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L  504 (970)
                      .+++++.|++.++.+.. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            45678888888887764 33 36778888888888888876544  7788888888888888876544  7777888888


Q ss_pred             eccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCC
Q 036729          505 ALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSG  584 (970)
Q Consensus       505 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~  584 (970)
                      ++++|.+++..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|+++ |.+.+ ..+                   
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~-~~~-------------------  172 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTD-LKP-------------------  172 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCC-CGG-------------------
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccC-chh-------------------
Confidence            888887776543  66677777777777766653  235666666666664 22221 112                   


Q ss_pred             CCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccc
Q 036729          585 PIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS  664 (970)
Q Consensus       585 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~  664 (970)
                           +..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..
T Consensus       173 -----~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~  241 (466)
T 1o6v_A          173 -----LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS  241 (466)
T ss_dssp             -----GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred             -----hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhc
Confidence                 44455555555555554432  235566666666666666665443  55566666666666666643  24566


Q ss_pred             cCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEE
Q 036729          665 LQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR  744 (970)
Q Consensus       665 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  744 (970)
                      +++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|+
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            6777777777777765544  6667777777777777765433  6667777777777777776544  66777777888


Q ss_pred             CccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729          745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ  824 (970)
Q Consensus       745 Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  824 (970)
                      +++|++++..|  +..++.|+. |++++|.+++.  +.++++++|+.|++++|++++..|  +..+++|+.|++++|+++
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~-L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQR-LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCE-EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             CcCCcCCCchh--hccCccCCE-eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            88877776655  667777777 88888887765  467888899999999999988877  788889999999999888


Q ss_pred             cc
Q 036729          825 GQ  826 (970)
Q Consensus       825 g~  826 (970)
                      +.
T Consensus       389 ~~  390 (466)
T 1o6v_A          389 NA  390 (466)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-35  Score=339.11  Aligned_cols=325  Identities=21%  Similarity=0.148  Sum_probs=258.8

Q ss_pred             CCceEEccccccccCCCccccCCCCCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceecc
Q 036729          524 ELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLA  602 (970)
Q Consensus       524 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls  602 (970)
                      .++.|++++|.+++..+..+..+++|++|++++|.+++..+ .+.++++|+.|++++|.+++..+..|..+++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            34444444444444444444444455555555554444322 34455555555666666555555567778888888888


Q ss_pred             CccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCC
Q 036729          603 HNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTV  682 (970)
Q Consensus       603 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  682 (970)
                      +|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            88888777888888899999999999998888888899999999999999998877778889999999999999999888


Q ss_pred             CCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhh
Q 036729          683 PAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT  762 (970)
Q Consensus       683 p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  762 (970)
                      +..|..+++|++|++++|...+.+|.......+|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..++
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence            88899999999999999988888887777777999999999999977777899999999999999999988888899999


Q ss_pred             hhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCccc--cCCCCcccC
Q 036729          763 ELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTF--SGFPLSSFL  840 (970)
Q Consensus       763 ~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~--~~~~~~~~~  840 (970)
                      .|+. |++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.++..|  .......+.
T Consensus       273 ~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~  351 (477)
T 2id5_A          273 RLQE-IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN  351 (477)
T ss_dssp             TCCE-EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCT
T ss_pred             cCCE-EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccC
Confidence            9998 9999999999999999999999999999999999888889999999999999999999988322  222334566


Q ss_pred             CCCCCCCCC
Q 036729          841 GNAKLCGPP  849 (970)
Q Consensus       841 ~n~~lc~~~  849 (970)
                      ++...|..|
T Consensus       352 ~~~~~C~~p  360 (477)
T 2id5_A          352 RQQPTCATP  360 (477)
T ss_dssp             TCCCBEEES
T ss_pred             ccCceeCCc
Confidence            777778654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.5e-34  Score=333.01  Aligned_cols=346  Identities=28%  Similarity=0.367  Sum_probs=245.3

Q ss_pred             CcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEE
Q 036729          401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVIL  480 (970)
Q Consensus       401 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  480 (970)
                      .+++++.|++.++.+.. +| .+..+++|++|++++|.+.+..+  +.++++|++|++++|.+.+..+  +..+++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            46789999999999874 45 47889999999999999987654  8999999999999999997765  8999999999


Q ss_pred             eeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccc
Q 036729          481 QLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFS  560 (970)
Q Consensus       481 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  560 (970)
                      ++++|.+++..+  +..+++|+.|++++|.+.+..  .+..+++|+.|+++ |.+.+..  .+..+++|+.|++++|.++
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence            999999987643  889999999999999998743  48899999999996 4554432  3788899999999988876


Q ss_pred             cccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcC
Q 036729          561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK  640 (970)
Q Consensus       561 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~  640 (970)
                      +. +.+..+++|+.|++++|.+++..+                          ++.+++|++|++++|.+++.  +.+..
T Consensus       191 ~~-~~l~~l~~L~~L~l~~n~l~~~~~--------------------------~~~l~~L~~L~l~~n~l~~~--~~l~~  241 (466)
T 1o6v_A          191 DI-SVLAKLTNLESLIATNNQISDITP--------------------------LGILTNLDELSLNGNQLKDI--GTLAS  241 (466)
T ss_dssp             CC-GGGGGCTTCSEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCC--GGGGG
T ss_pred             CC-hhhccCCCCCEEEecCCccccccc--------------------------ccccCCCCEEECCCCCcccc--hhhhc
Confidence            42 234444455555555554443322                          44455555555555555532  23455


Q ss_pred             cCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceec
Q 036729          641 CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLN  720 (970)
Q Consensus       641 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~  720 (970)
                      +++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++..+  +..+++|++|+
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            5556666666665555433  5555666666666666655433  5556666666666666665433  55666666666


Q ss_pred             cCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036729          721 LQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ  800 (970)
Q Consensus       721 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~  800 (970)
                      +++|++++..|  +..+++|+.|++++|++++.  ..+..++.|+. |++++|.+++.+|  +..+++|+.|++++|.++
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~-L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW-LSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE-EECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCE-EeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            66666666554  55667777777777777654  35666777776 7777777776665  677778888888888777


Q ss_pred             c
Q 036729          801 G  801 (970)
Q Consensus       801 ~  801 (970)
                      +
T Consensus       389 ~  389 (466)
T 1o6v_A          389 N  389 (466)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=322.94  Aligned_cols=323  Identities=21%  Similarity=0.219  Sum_probs=230.8

Q ss_pred             CeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccc
Q 036729          406 ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN  485 (970)
Q Consensus       406 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  485 (970)
                      +.++.+++.++ .+|..+.  +.++.|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            35555555555 3443332  45666666666666555555666666666666666665555555556666666666666


Q ss_pred             cCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCC
Q 036729          486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYP  565 (970)
Q Consensus       486 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  565 (970)
                      .+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+.                       .
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------~  147 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-----------------------A  147 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-----------------------S
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-----------------------h
Confidence            55544444455555555555555555554444444444444444444444443333                       3


Q ss_pred             CCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCccc
Q 036729          566 LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA  645 (970)
Q Consensus       566 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~  645 (970)
                      +.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+.++.......+|+
T Consensus       148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  227 (477)
T 2id5_A          148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT  227 (477)
T ss_dssp             STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred             ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence            44555566666666666655666777888888888888888887777888889999999998888777777766677899


Q ss_pred             EEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCc
Q 036729          646 HLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNS  725 (970)
Q Consensus       646 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~  725 (970)
                      +|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus       228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence            99999999887666778889999999999999998888888899999999999999998888889999999999999999


Q ss_pred             cccccchhhhcccCCcEEECccccccccC
Q 036729          726 LSGNIPSTIQQCKKLYELRLSENFFTGSI  754 (970)
Q Consensus       726 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i  754 (970)
                      +++..+..|..+++|+.|++++|++++..
T Consensus       308 l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          308 LTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             CSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             CceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            99888888888999999999999988653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=2.4e-34  Score=313.76  Aligned_cols=268  Identities=23%  Similarity=0.307  Sum_probs=183.3

Q ss_pred             hcCChHHHHHHHHHHhhC-CCCCCCCCCC----CCCCCCCCccceEecC--------CCCCEEEEECCCCCCccccccCc
Q 036729           20 LGGISTDSFWLLRIKQEL-VDPTGILENW----SARAHMCSWHGVTCSD--------DQKHVVGLNLSSSGLSGSISRDF   86 (970)
Q Consensus        20 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~~~~l   86 (970)
                      +++..+|++||++||+++ .++.+.+.+|    ....++|.|.|+.|..        ...+|+.|+|+++.++ .+|+.+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            346678999999999988 4566666788    4567899999999952        3468999999999988 778888


Q ss_pred             cCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccC------
Q 036729           87 LNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGN------  160 (970)
Q Consensus        87 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~------  160 (970)
                      .++++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..++.+++|++|++++|.+.+.+|..++.      
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            88999999999999988 78888899999999999999888 78888888999999999988888888876654      


Q ss_pred             ---CcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCc
Q 036729          161 ---LTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQ  237 (970)
Q Consensus       161 ---l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  237 (970)
                         +++|++|++++|+++ .+|..++++++|++|++++|++++                         +|..+..+++|+
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-------------------------l~~~l~~l~~L~  232 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-------------------------LGPAIHHLPKLE  232 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-------------------------CCGGGGGCTTCC
T ss_pred             hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-------------------------CchhhccCCCCC
Confidence               555555555555554 444445555555555555555543                         333444555555


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCC
Q 036729          238 ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN  316 (970)
Q Consensus       238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  316 (970)
                      +|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|+.+++..+
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555555555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.1e-34  Score=311.17  Aligned_cols=255  Identities=32%  Similarity=0.576  Sum_probs=154.8

Q ss_pred             CCceeccCccccC--CCCcccccCCCCcEEEccC-CcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729          596 LSRLRLAHNHLTG--NIPSEFGKLTELNFLDLSF-NSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD  672 (970)
Q Consensus       596 L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  672 (970)
                      ++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            4444444444444  4444555555555555552 555555555555555555555555555555555555555555555


Q ss_pred             cccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccc-ccceeccCCCccccccchhhhcccCCcEEECcccccc
Q 036729          673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT-ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT  751 (970)
Q Consensus       673 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  751 (970)
                      +++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|.++
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence            555555555555555555555555555555555555555555 566666666666655666665555 666666666666


Q ss_pred             ccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCc--
Q 036729          752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPL--  829 (970)
Q Consensus       752 ~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~--  829 (970)
                      +.+|..+..++.|+. |++++|.+++.+|. +..+++|++|++++|+++|.+|..+..+++|++|++++|+++|.+|.  
T Consensus       211 ~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          211 GDASVLFGSDKNTQK-IHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             ECCGGGCCTTSCCSE-EECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             CcCCHHHhcCCCCCE-EECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            666666666666665 66666666655554 66677777777777777777777777777777777777777777773  


Q ss_pred             cccCCCCcccCCCCCCCCCCCCCC
Q 036729          830 TFSGFPLSSFLGNAKLCGPPLLSC  853 (970)
Q Consensus       830 ~~~~~~~~~~~~n~~lc~~~~~~c  853 (970)
                      .+..+....+.+|+.+||.|...|
T Consensus       289 ~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccccChHHhcCCCCccCCCCCCC
Confidence            334444556777888888776666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.3e-33  Score=329.91  Aligned_cols=334  Identities=22%  Similarity=0.225  Sum_probs=239.3

Q ss_pred             CCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEE
Q 036729          474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIIN  553 (970)
Q Consensus       474 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  553 (970)
                      +.+++.+++++|.+....+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45566666666666554444455566666666666666655555555555555555555555555554445555555554


Q ss_pred             ccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC
Q 036729          554 FSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ  633 (970)
Q Consensus       554 ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  633 (970)
                                             +++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++.
T Consensus       130 -----------------------L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          130 -----------------------LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             -----------------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             -----------------------eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence                                   445554444444456666677777777777766666677777777777777777654


Q ss_pred             CcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccc
Q 036729          634 IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL  713 (970)
Q Consensus       634 ~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  713 (970)
                      .   +..+++|+.|++++|.+++     +...++|+.|++++|.+....+..   .++|+.|++++|.+++.  ..+..+
T Consensus       187 ~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l  253 (597)
T 3oja_B          187 D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNY  253 (597)
T ss_dssp             C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGC
T ss_pred             C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccC
Confidence            2   4456667777777777654     234467788888888877543322   35788888888888763  678888


Q ss_pred             cccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEe
Q 036729          714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN  793 (970)
Q Consensus       714 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~  793 (970)
                      ++|+.|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..++.|+. |+|++|.++ .+|..++.+++|+.|+
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~-L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCE-EECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcE-EECCCCCCC-ccCcccccCCCCCEEE
Confidence            889999999999888888888889999999999998886 5777777888888 999999998 6788889999999999


Q ss_pred             CCCCcCccccCcccCCCCcCcEEecCCCcccccCC-ccccCCCCcccCCCCCCCCCC
Q 036729          794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP-LTFSGFPLSSFLGNAKLCGPP  849 (970)
Q Consensus       794 ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p-~~~~~~~~~~~~~n~~lc~~~  849 (970)
                      |++|.+++..   +..+++|+.|++++|++.|.++ ..+..+....+.++...|+.+
T Consensus       331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcc
Confidence            9999998753   6678899999999999999877 556667777788899899864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-32  Score=308.15  Aligned_cols=334  Identities=22%  Similarity=0.229  Sum_probs=230.4

Q ss_pred             CCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEE
Q 036729          474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIIN  553 (970)
Q Consensus       474 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  553 (970)
                      +++++.+++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45566666666665544333455566666666666666555555555555555555555555555555455555555555


Q ss_pred             ccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC
Q 036729          554 FSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ  633 (970)
Q Consensus       554 ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  633 (970)
                      +++|                       .++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus       124 L~~n-----------------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          124 LERN-----------------------DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CCSS-----------------------CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCC-----------------------ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            5554                       44433333445666666666666666666666666777777777777776654


Q ss_pred             CcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccc
Q 036729          634 IAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNL  713 (970)
Q Consensus       634 ~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l  713 (970)
                         .+..+++|+.|++++|.+++     +...++|++|++++|.+..... .  ..++|++|++++|.+++.  ..+..+
T Consensus       181 ---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~--~~l~~l  247 (390)
T 3o6n_A          181 ---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT--AWLLNY  247 (390)
T ss_dssp             ---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC-C--CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred             ---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc-c--ccccccEEECCCCCCccc--HHHcCC
Confidence               24455667777777776653     2334567778888887775422 2  246788888888888764  567788


Q ss_pred             cccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEe
Q 036729          714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN  793 (970)
Q Consensus       714 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~  793 (970)
                      ++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+..++.|+. |++++|.++ .+|..++.+++|++|+
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~-L~L~~n~l~-~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV-LDLSHNHLL-HVERNQPQFDRLENLY  324 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCE-EECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCE-EECCCCcce-ecCccccccCcCCEEE
Confidence            888888888888888888888888888888888888885 5666677888887 899999888 5677788899999999


Q ss_pred             CCCCcCccccCcccCCCCcCcEEecCCCcccccCC-ccccCCCCcccCCCCCCCCCC
Q 036729          794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP-LTFSGFPLSSFLGNAKLCGPP  849 (970)
Q Consensus       794 ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p-~~~~~~~~~~~~~n~~lc~~~  849 (970)
                      +++|++++. |  +..+++|++|++++|++.|... ..+..+....+.+++..|..+
T Consensus       325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTT
T ss_pred             CCCCcccee-C--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceeccc
Confidence            999999865 3  6778899999999999999876 445556666677777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1e-32  Score=310.27  Aligned_cols=350  Identities=19%  Similarity=0.174  Sum_probs=210.3

Q ss_pred             CCCCCCCCCCCC-ccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecC
Q 036729           44 LENWSARAHMCS-WHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLY  122 (970)
Q Consensus        44 ~~~w~~~~~~c~-w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls  122 (970)
                      +++|....+||. |.++.|.....++     ............-..++++++|++++|.+....+..+..+++|++|+++
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~   77 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN   77 (390)
T ss_dssp             ----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred             cCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence            567987777875 5555553211111     1111111122223456889999999998875545557889999999999


Q ss_pred             CCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCC
Q 036729          123 SNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLI  202 (970)
Q Consensus       123 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~  202 (970)
                      +|.+.+..|..++.+++|++|++++|.+.+..|..++++++|++|++++|+++...+..++++++|++|++++|++++..
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            99988777778889999999999999888777777888888888888888877444444677888888888888877777


Q ss_pred             cccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCC
Q 036729          203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLA  282 (970)
Q Consensus       203 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~  282 (970)
                      +..+.++++|++|++++|.+++.   .+..+++|++|++++|.+++.     ...++|++|++++|.+.....   ...+
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~  226 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNV  226 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCS
T ss_pred             hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccc
Confidence            77777777777777777776643   245566677777777666532     223456666666666554311   1234


Q ss_pred             CccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeC
Q 036729          283 QLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDL  362 (970)
Q Consensus       283 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  362 (970)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+.                         +..+..+..+++|++|++
T Consensus       227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~-------------------------~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-------------------------KIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-------------------------EEESGGGTTCSSCCEEEC
T ss_pred             cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC-------------------------CcChhHccccccCCEEEC
Confidence            555555555555543  23444555555555555544                         444444444555555555


Q ss_pred             CCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCC
Q 036729          363 SDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG  441 (970)
Q Consensus       363 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  441 (970)
                      ++|++++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.. +  +..+++|+.|++++|++..
T Consensus       280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            5555543 2333344555555555555554 3344455555566666666555532 2  4455566666666665543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.7e-32  Score=321.74  Aligned_cols=348  Identities=19%  Similarity=0.193  Sum_probs=212.8

Q ss_pred             CCCCCCCCCCCCC----ccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcE
Q 036729           43 ILENWSARAHMCS----WHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRI  118 (970)
Q Consensus        43 ~~~~w~~~~~~c~----w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  118 (970)
                      .+++|....+||.    |.++.|+.   +   ++-......  ....-..+++++.|++++|.+....+..++.+++|++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~   79 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL   79 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC---E---ECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSE
T ss_pred             cccCCCCCCcCcccCcCceeEecCc---e---ecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcE
Confidence            4668987777875    66555541   1   111111111  1112234678889999988887665666788899999


Q ss_pred             eecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcC
Q 036729          119 LLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKL  198 (970)
Q Consensus       119 L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i  198 (970)
                      |+|++|.+.+..|..++.+++|++|+|++|.+.+..|..++++++|++|++++|.+++..+..++++++|++|++++|.+
T Consensus        80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            99999988877777888888888888888888777777777888888888888877755454567777777777777777


Q ss_pred             CCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccc
Q 036729          199 SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSEL  278 (970)
Q Consensus       199 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l  278 (970)
                      ++..|..|.++++|++|++++|.+++..   +..+++|+.|++++|.+++.     ...++|+.|++++|.+....+.. 
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~-  230 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV-  230 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC-
T ss_pred             CCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc-
Confidence            7777767777777777777777666432   34456666666666665532     23345566666666554332211 


Q ss_pred             cCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCC
Q 036729          279 NKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQ  358 (970)
Q Consensus       279 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  358 (970)
                        .++|+.|++++|.+++.  ..+..+++|+.|++++|.                         +.+..|..+..+++|+
T Consensus       231 --~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~-------------------------l~~~~~~~~~~l~~L~  281 (597)
T 3oja_B          231 --NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-------------------------LEKIMYHPFVKMQRLE  281 (597)
T ss_dssp             --CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-------------------------CCEEESGGGTTCSSCC
T ss_pred             --CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCc-------------------------cCCCCHHHhcCccCCC
Confidence              13455555555555442  334444444444444444                         4444444445555555


Q ss_pred             EEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEccccc
Q 036729          359 QLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQ  438 (970)
Q Consensus       359 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  438 (970)
                      .|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.   .+..+++|+.|++++|+
T Consensus       282 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          282 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEECCSSC
T ss_pred             EEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEeeCCC
Confidence            55555555553 2344445556666666666555 3455555566666666666666543   14555666666666666


Q ss_pred             CCC
Q 036729          439 MSG  441 (970)
Q Consensus       439 l~~  441 (970)
                      +.+
T Consensus       357 ~~~  359 (597)
T 3oja_B          357 WDC  359 (597)
T ss_dssp             EEH
T ss_pred             CCC
Confidence            553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=2.4e-31  Score=294.35  Aligned_cols=307  Identities=21%  Similarity=0.349  Sum_probs=180.2

Q ss_pred             ccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCc
Q 036729          471 MGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLR  550 (970)
Q Consensus       471 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  550 (970)
                      +..+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+  +..+++|+.|++++|.++..  ..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            44567778888887777643 3 36677777777777777765444  66667777777777666543  2455666666


Q ss_pred             EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcC
Q 036729          551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSF  630 (970)
Q Consensus       551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  630 (970)
                      +|++++|.+.+.. .+..+++|+.|++++|..                        ...++ .+..+++|++|++++|.+
T Consensus       114 ~L~l~~n~i~~~~-~~~~l~~L~~L~l~~n~~------------------------~~~~~-~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          114 ELYLNEDNISDIS-PLANLTKMYSLNLGANHN------------------------LSDLS-PLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             EEECTTSCCCCCG-GGTTCTTCCEEECTTCTT------------------------CCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             EEECcCCcccCch-hhccCCceeEEECCCCCC------------------------ccccc-chhhCCCCcEEEecCCCc
Confidence            6666666555322 244444455555554433                        32222 245555555555555555


Q ss_pred             ccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccc
Q 036729          631 TGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI  710 (970)
Q Consensus       631 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l  710 (970)
                      .+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +
T Consensus       168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~  239 (347)
T 4fmz_A          168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L  239 (347)
T ss_dssp             CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence            43322  4455555555555555554322  4555555555555555554433  4555556666666665554332  5


Q ss_pred             ccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCC
Q 036729          711 GNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLE  790 (970)
Q Consensus       711 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~  790 (970)
                      ..+++|++|++++|.+++.  +.+..+++|+.|++++|++++.  ..+..++.|+. |++++|.+++..|..++.+++|+
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS-LFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE-EECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE-EECcCCcCCCcChhHhhccccCC
Confidence            5556666666666665543  3455666666666666666643  34566666666 66666666666666677777777


Q ss_pred             EEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729          791 RLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ  824 (970)
Q Consensus       791 ~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  824 (970)
                      +|++++|++++..|  +..+++|++||+++|+++
T Consensus       315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            77777777776655  666777777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=6.9e-31  Score=290.61  Aligned_cols=308  Identities=25%  Similarity=0.352  Sum_probs=205.4

Q ss_pred             ccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCC
Q 036729          446 ELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL  525 (970)
Q Consensus       446 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  525 (970)
                      .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++.  ..+..+++|
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            355789999999999999854 3 48889999999999999986544  88999999999999999874  368999999


Q ss_pred             ceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCcc
Q 036729          526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH  605 (970)
Q Consensus       526 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  605 (970)
                      +.|++++|.+.+..+  +..+++|+.|++++|......+.+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            999999999987644  889999999999999776666667777777777777777654332  4555555555555555


Q ss_pred             ccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCC
Q 036729          606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAE  685 (970)
Q Consensus       606 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  685 (970)
                      +.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.                        .+  
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~------------------------~~--  238 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL------------------------SP--  238 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC------------------------GG--
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC------------------------cc--
Confidence            543221  4455555555555555543322  44444455555555544433                        22  


Q ss_pred             CCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhH
Q 036729          686 IGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQ  765 (970)
Q Consensus       686 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  765 (970)
                      +..+++|++|++++|.+++.  +.+..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|..++.++.|+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            44455555555555554432  2344555555555555555543  2355566666666666666666666666666666


Q ss_pred             hhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036729          766 VILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ  800 (970)
Q Consensus       766 ~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~  800 (970)
                      . |++++|.+++..|  ++.+++|++||+++|.++
T Consensus       315 ~-L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          315 T-LFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             E-EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             E-EEccCCccccccC--hhhhhccceeehhhhccc
Confidence            5 6666666665544  667777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.9e-29  Score=275.29  Aligned_cols=266  Identities=22%  Similarity=0.269  Sum_probs=182.8

Q ss_pred             CCcEEEccccccccccC-CCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEcc
Q 036729          548 KLRIINFSHNKFSGSIY-PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLS  626 (970)
Q Consensus       548 ~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  626 (970)
                      +++.|++++|.+++..+ .+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence            44555555555544332 3455555555555555555555666666667777777777666 3444443  677777777


Q ss_pred             CCcCccCCcccCcCcCcccEEEccCCccc--CCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc
Q 036729          627 FNSFTGQIAPQLSKCAKLAHLLLSNNELT--GTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG  704 (970)
Q Consensus       627 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~  704 (970)
                      +|.+++..+..+.++++|++|++++|.++  +..|..+..+ +|++|++++|++++ +|..+.  ++|++|++++|.+++
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~  207 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQA  207 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCC
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCc
Confidence            77777666666777777777777777774  3556666666 77777777777775 444333  677777888887777


Q ss_pred             cCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCcccc
Q 036729          705 KIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLG  784 (970)
Q Consensus       705 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~  784 (970)
                      ..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..++.|+. |++++|.+++..+..|.
T Consensus       208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~-L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV-VYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE-EECCSSCCCBCCTTSSS
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE-EECCCCCCCccChhHcc
Confidence            77777777788888888888887777777777888888888888877 67777777778877 88888888776666665


Q ss_pred             C------CCCCCEEeCCCCcCc--cccCcccCCCCcCcEEecCCCc
Q 036729          785 S------LLKLERLNISYNQLQ--GQVPASLGKLTSLHVLNLSNNH  822 (970)
Q Consensus       785 ~------l~~L~~L~ls~N~l~--~~~p~~l~~l~~L~~l~ls~N~  822 (970)
                      .      ...|+.|++++|.+.  +..|..+..++.|+.+++++|.
T Consensus       286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            4      356888888888887  6677778888888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1e-28  Score=270.86  Aligned_cols=247  Identities=21%  Similarity=0.263  Sum_probs=148.7

Q ss_pred             ccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECC
Q 036729          499 KRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLT  578 (970)
Q Consensus       499 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~  578 (970)
                      +.++.|++++|.+++..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.++.....+.  ++|++|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence            344555555555554444445555555555555555555555555555666666666665543222221  466666666


Q ss_pred             CCCCCCCCCcccccCcCCCceeccCcccc--CCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccC
Q 036729          579 NNSFSGPIPSELAMSRNLSRLRLAHNHLT--GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG  656 (970)
Q Consensus       579 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~  656 (970)
                      +|.+++..+..+..+++|+.|++++|.+.  +..+..+..+++|++|++++|.++. +|..+.  ++|++|++++|.+++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence            66666666666666777777777777664  2556666777777777777777664 333332  567777777777666


Q ss_pred             CccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhc
Q 036729          657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQ  736 (970)
Q Consensus       657 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~  736 (970)
                      ..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            66666666677777777777766666556666666666666666666 45556666666666666666666555554432


Q ss_pred             ------ccCCcEEECcccccc
Q 036729          737 ------CKKLYELRLSENFFT  751 (970)
Q Consensus       737 ------l~~L~~L~Ls~N~l~  751 (970)
                            ...++.|++++|++.
T Consensus       286 ~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          286 PGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             SSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccccccccceEeecCccc
Confidence                  244555555555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=9.4e-33  Score=318.65  Aligned_cols=374  Identities=20%  Similarity=0.177  Sum_probs=204.6

Q ss_pred             CCCEEEcccccCCCcCCcc-cccCCCCCEEeccccccCC----cccccccCCCCccEEeeccccCCCCCCCccccccccc
Q 036729          428 TLSAIYLYDNQMSGSIPRE-LTNCSGLTEIDFFGNHFSG----SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQ  502 (970)
Q Consensus       428 ~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~  502 (970)
                      +|++|++++|+++...... +..+++|++|++++|.++.    .++..+..+++|++|++++|.+.              
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--------------   69 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--------------   69 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--------------
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--------------
Confidence            4455555555554332221 4445555555555555543    12333444455555555555443              


Q ss_pred             EEeccCCcccCccCcch-hcCC----CCceEEcccccccc----CCCccccCCCCCcEEEccccccccccC------CCC
Q 036729          503 QIALADNKLSGSVPLTF-RFLS----ELYLITLYNNSFKG----PLPPSLFQLKKLRIINFSHNKFSGSIY------PLT  567 (970)
Q Consensus       503 ~L~Ls~n~l~~~~~~~~-~~l~----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~------~~~  567 (970)
                                +..+..+ ..++    +|+.|++++|.++.    .++..+..+++|++|++++|.+++...      ...
T Consensus        70 ----------~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  139 (461)
T 1z7x_W           70 ----------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD  139 (461)
T ss_dssp             ----------HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             ----------hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence                      3222211 1222    35555555554442    234445555556666666665543211      012


Q ss_pred             CCCcccEEECCCCCCCCCC----CcccccCcCCCceeccCccccCCCCcccc-----cCCCCcEEEccCCcCccC----C
Q 036729          568 GSNSLTALDLTNNSFSGPI----PSELAMSRNLSRLRLAHNHLTGNIPSEFG-----KLTELNFLDLSFNSFTGQ----I  634 (970)
Q Consensus       568 ~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~~----~  634 (970)
                      ..++|++|++++|.+++..    +..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    +
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            2345666666666665432    44455566777777777766543333332     245677777777777653    3


Q ss_pred             cccCcCcCcccEEEccCCcccCCc-----cccccccCccceEEcccCcCcCC----CCCCCCCCCcceEEEccCCcCccc
Q 036729          635 APQLSKCAKLAHLLLSNNELTGTI-----PFWLGSLQEIGELDLSSNNFNGT----VPAEIGNCSKLLKLSLRGNNLSGK  705 (970)
Q Consensus       635 ~~~l~~~~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~  705 (970)
                      +..+..+++|++|++++|.+++..     +..+..+++|++|++++|++++.    ++..+..+++|++|++++|.+++.
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            455566677777777777665432     22223466777777777776643    344555667777777777776544


Q ss_pred             CCcccccc-----cccceeccCCCccccc----cchhhhcccCCcEEECccccccccCchhhhh-----hhhhHhhhhCC
Q 036729          706 IPPEIGNL-----TALNVLNLQRNSLSGN----IPSTIQQCKKLYELRLSENFFTGSIPADLGR-----LTELQVILDLS  771 (970)
Q Consensus       706 ~~~~l~~l-----~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~~L~ls  771 (970)
                      .+..+...     ++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .+.|+. |+++
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~-L~L~  378 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV-LWLA  378 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE-EECT
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE-EECC
Confidence            33333322     5677777777777654    3455566677777777777776655554443     446666 7777


Q ss_pred             CCcccc----cCCccccCCCCCCEEeCCCCcCccccCcccC-----CCCcCcEEecCCCccccc
Q 036729          772 KNNFSG----EIPPSLGSLLKLERLNISYNQLQGQVPASLG-----KLTSLHVLNLSNNHLQGQ  826 (970)
Q Consensus       772 ~N~l~g----~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~-----~l~~L~~l~ls~N~l~g~  826 (970)
                      +|.+++    .+|..+..+++|++||+++|++++.-...+.     ....|+.|++.++.+...
T Consensus       379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            777765    5666666677777777777777654111111     123455555555554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.8e-28  Score=269.06  Aligned_cols=288  Identities=22%  Similarity=0.262  Sum_probs=178.5

Q ss_pred             CCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeec
Q 036729          404 KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLR  483 (970)
Q Consensus       404 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  483 (970)
                      +++.++++++.++ .+|..+  .++++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4556666666554 344333  2456666666666665555566666666666666666666666666666666666666


Q ss_pred             cccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEcccccccc--CCCccccCCCCCcEEEcccccccc
Q 036729          484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG--PLPPSLFQLKKLRIINFSHNKFSG  561 (970)
Q Consensus       484 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~  561 (970)
                      +|.++. +|..+.  ++|+.|++++|.+.+..+..|..+++|+.|++++|.++.  ..+..+..+ +|+.|++++|.+++
T Consensus       111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            666653 333332  566666666666665555556666666666666665542  344444444 55555555555443


Q ss_pred             ccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCc
Q 036729          562 SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKC  641 (970)
Q Consensus       562 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~  641 (970)
                                              +|..+.  ++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus       187 ------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          187 ------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             ------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             ------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence                                    222222  456666666666666666666667777777777777766666666667


Q ss_pred             CcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCC------CCcceEEEccCCcCc--ccCCcccccc
Q 036729          642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGN------CSKLLKLSLRGNNLS--GKIPPEIGNL  713 (970)
Q Consensus       642 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~--~~~~~~l~~l  713 (970)
                      ++|++|++++|+++ .+|.++..+++|++|++++|++++..+..|..      ...|+.|++++|++.  +..|..+..+
T Consensus       241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l  319 (332)
T 2ft3_A          241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV  319 (332)
T ss_dssp             TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred             CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence            77777777777766 55666777777777777777777665555544      356788888888877  5566778888


Q ss_pred             cccceeccCCCc
Q 036729          714 TALNVLNLQRNS  725 (970)
Q Consensus       714 ~~L~~L~L~~N~  725 (970)
                      ++|+.+++++|+
T Consensus       320 ~~L~~l~l~~n~  331 (332)
T 2ft3_A          320 TDRLAIQFGNYK  331 (332)
T ss_dssp             CCSTTEEC----
T ss_pred             chhhhhhccccc
Confidence            888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4e-28  Score=266.12  Aligned_cols=289  Identities=22%  Similarity=0.275  Sum_probs=174.8

Q ss_pred             CCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeec
Q 036729          404 KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLR  483 (970)
Q Consensus       404 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  483 (970)
                      +++.++++++.++ .+|..+.  +.++.|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4555555555554 2333222  455666666666665555556666666666666666666656666666666666666


Q ss_pred             cccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEcccccccc--CCCccccCCCCCcEEEcccccccc
Q 036729          484 QNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG--PLPPSLFQLKKLRIINFSHNKFSG  561 (970)
Q Consensus       484 ~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~  561 (970)
                      +|.++. +|..+.  ++|+.|++++|.+++..+..|..+++|+.|++++|.+..  ..+..+..+++|+.|++++|.++.
T Consensus       109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            666653 333332  567777777777766666666667777777777766643  455566666666666666666553


Q ss_pred             ccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCc
Q 036729          562 SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKC  641 (970)
Q Consensus       562 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~  641 (970)
                      .                        |..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+
T Consensus       186 l------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          186 I------------------------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             C------------------------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             C------------------------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            2                        11111  445555555555555555566666666666666666666555566666


Q ss_pred             CcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCC------CCcceEEEccCCcCcc--cCCcccccc
Q 036729          642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGN------CSKLLKLSLRGNNLSG--KIPPEIGNL  713 (970)
Q Consensus       642 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~--~~~~~l~~l  713 (970)
                      ++|++|++++|+++ .+|.++..+++|++|++++|++++..+..|..      .+.++.|++++|.+..  ..|..+..+
T Consensus       240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~  318 (330)
T 1xku_A          240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  318 (330)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence            66666666666666 45556666666666667666666555555532      3667788888887753  445677778


Q ss_pred             cccceeccCCCc
Q 036729          714 TALNVLNLQRNS  725 (970)
Q Consensus       714 ~~L~~L~L~~N~  725 (970)
                      .+++.+++++|+
T Consensus       319 ~~l~~l~L~~N~  330 (330)
T 1xku_A          319 YVRAAVQLGNYK  330 (330)
T ss_dssp             CCGGGEEC----
T ss_pred             cceeEEEecccC
Confidence            888888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.1e-31  Score=309.78  Aligned_cols=351  Identities=21%  Similarity=0.194  Sum_probs=274.8

Q ss_pred             CCccEEeeccccCCCCCCC-cccccccccEEeccCCcccCc----cCcchhcCCCCceEEccccccccCCCcccc-CCC-
Q 036729          475 KNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALADNKLSGS----VPLTFRFLSELYLITLYNNSFKGPLPPSLF-QLK-  547 (970)
Q Consensus       475 ~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~-  547 (970)
                      ++|+.|++++|+++..... .+..+++|+.|++++|.++..    ++..+..+++|+.|++++|.+....+..+. .++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3456666666665533222 255667777777777776643    456677789999999999998765443332 344 


Q ss_pred             ---CCcEEEccccccccc-----cCCCCCCCcccEEECCCCCCCCCCCcccc-----cCcCCCceeccCccccCCC----
Q 036729          548 ---KLRIINFSHNKFSGS-----IYPLTGSNSLTALDLTNNSFSGPIPSELA-----MSRNLSRLRLAHNHLTGNI----  610 (970)
Q Consensus       548 ---~L~~L~ls~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~Ls~n~l~~~~----  610 (970)
                         +|++|++++|.++..     ...+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               799999999998842     23678889999999999998764444333     2567999999999998643    


Q ss_pred             CcccccCCCCcEEEccCCcCccCCcccCc-----CcCcccEEEccCCcccCC----ccccccccCccceEEcccCcCcCC
Q 036729          611 PSEFGKLTELNFLDLSFNSFTGQIAPQLS-----KCAKLAHLLLSNNELTGT----IPFWLGSLQEIGELDLSSNNFNGT  681 (970)
Q Consensus       611 p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-----~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  681 (970)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|++.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            55677889999999999998865444443     256899999999999875    577788899999999999998753


Q ss_pred             C-----CCCCCCCCcceEEEccCCcCccc----CCcccccccccceeccCCCccccccchhhhcc-----cCCcEEECcc
Q 036729          682 V-----PAEIGNCSKLLKLSLRGNNLSGK----IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQC-----KKLYELRLSE  747 (970)
Q Consensus       682 ~-----p~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~  747 (970)
                      .     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+++..+..+...     ++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            2     23344689999999999999864    56667789999999999999987666555443     6999999999


Q ss_pred             cccccc----CchhhhhhhhhHhhhhCCCCcccccCCccccC-----CCCCCEEeCCCCcCcc----ccCcccCCCCcCc
Q 036729          748 NFFTGS----IPADLGRLTELQVILDLSKNNFSGEIPPSLGS-----LLKLERLNISYNQLQG----QVPASLGKLTSLH  814 (970)
Q Consensus       748 N~l~~~----ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~-----l~~L~~L~ls~N~l~~----~~p~~l~~l~~L~  814 (970)
                      |.+++.    +|..+..++.|+. |++++|.+++..+..+..     .++|++|++++|++++    .+|..+..+++|+
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~-L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLE-LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCE-EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCCchHHHHHHHHHHhhCCCccE-EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            999976    5677778899998 999999998766655543     6799999999999997    8899999999999


Q ss_pred             EEecCCCccccc
Q 036729          815 VLNLSNNHLQGQ  826 (970)
Q Consensus       815 ~l~ls~N~l~g~  826 (970)
                      +||+++|++++.
T Consensus       402 ~L~l~~N~i~~~  413 (461)
T 1z7x_W          402 ELDLSNNCLGDA  413 (461)
T ss_dssp             EEECCSSSCCHH
T ss_pred             EEECCCCCCCHH
Confidence            999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=8.8e-32  Score=321.07  Aligned_cols=429  Identities=16%  Similarity=0.141  Sum_probs=248.6

Q ss_pred             CCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCC---CCCCCcccc------------CCCCCc
Q 036729           53 MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSL---TGLIPSELG------------QLQNLR  117 (970)
Q Consensus        53 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~---~~~~p~~l~------------~l~~L~  117 (970)
                      |++|.++.+..  .+  .+.+.+ .....++..+..+++|++|+|+++..   .+.+|..++            .+++|+
T Consensus        41 ck~W~~~~~~~--~~--~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~  115 (592)
T 3ogk_B           41 CRRWFKIDSET--RE--HVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK  115 (592)
T ss_dssp             CHHHHHHHHHH--CC--EEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred             hHHHHHhhhcc--cc--EEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence            44799986531  12  222222 22233344566788899999987642   123333222            688888


Q ss_pred             EeecCCCcCcCCCCcCCCCC--CCCcEEEccCccC-Cc-cCCccccCCcccchhhccccccccC----CCccccCCceee
Q 036729          118 ILLLYSNSFSGKIPPEIGFL--NKLQVLRIGDNLL-WG-EIPPHIGNLTELRELAIAYCQLNGS----IPVEIGNLKHLT  189 (970)
Q Consensus       118 ~L~Ls~n~~~~~~p~~l~~l--~~L~~L~L~~n~~-~~-~~p~~l~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~  189 (970)
                      +|+|++|.+++..+..++..  .+|++|++++|.. .. .++....++++|++|++++|.+++.    ++..+..+++|+
T Consensus       116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~  195 (592)
T 3ogk_B          116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE  195 (592)
T ss_dssp             EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred             eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence            89888888776655555553  3488888888752 11 1223334678888888888887655    333456678888


Q ss_pred             EEEcCCCcCCCCC----cccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCc---cccCccccCCCCCCE
Q 036729          190 SLDLQMNKLSGLI----PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLS---GSIPVELSHLFNLRY  262 (970)
Q Consensus       190 ~L~Ls~n~i~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~  262 (970)
                      +|++++|.+++..    +..+.++++|++|++++|.+.+ ++..+..+++|++|+++.+...   +..+..+..+++|+.
T Consensus       196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~  274 (592)
T 3ogk_B          196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR  274 (592)
T ss_dssp             EEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCE
T ss_pred             EEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccc
Confidence            8888888877433    3344577888888888877774 5677777888888888754322   233445667778888


Q ss_pred             EEccCccccccCCccccCCCCccEEECcCCcCccccc-cccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccC-
Q 036729          263 LNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS-LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR-  340 (970)
Q Consensus       263 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~-  340 (970)
                      |+++++. ...+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++ 
T Consensus       275 L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g  352 (592)
T 3ogk_B          275 LGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERG  352 (592)
T ss_dssp             EEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             cCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecC
Confidence            8777643 33456666777788888888777654433 335677778887777 4343333333334467777777773 


Q ss_pred             ----------CcCCCCC-ccccccCCCCCEEeCCCCcCCCCCCccccc-ccccccccCC----cccccCC-----CCcCC
Q 036729          341 ----------NKLSGEF-PLELLRCSSLQQLDLSDNSFKGELPRSLDK-LEELTDLLLN----NNSFTGS-----FPPEI  399 (970)
Q Consensus       341 ----------n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~l  399 (970)
                                +.+++.. ......|++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.     ++..+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~  432 (592)
T 3ogk_B          353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL  432 (592)
T ss_dssp             CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred             ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence                      3443321 222345677777777666666544444443 5666666664    3344432     11123


Q ss_pred             CCcCCCCeeeccccc--ccccCCcccc-CCCCCCEEEcccccCCC-cCCcccccCCCCCEEeccccccCCc-ccccccCC
Q 036729          400 GNLSKLENLFLFDNM--ITGKIPVEIG-KLQTLSAIYLYDNQMSG-SIPRELTNCSGLTEIDFFGNHFSGS-IPETMGKL  474 (970)
Q Consensus       400 ~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l  474 (970)
                      .++++|++|++++|.  +++..+..+. .+++|++|++++|++++ .++..+.++++|++|++++|.+++. ++..+..+
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l  512 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL  512 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc
Confidence            445566666665332  3333332222 24555555555555544 2223334555555555555554432 22223345


Q ss_pred             CCccEEeeccccCCC
Q 036729          475 KNLVILQLRQNDLSG  489 (970)
Q Consensus       475 ~~L~~L~L~~n~l~~  489 (970)
                      ++|+.|++++|+++.
T Consensus       513 ~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          513 PSLRYLWVQGYRASM  527 (592)
T ss_dssp             SSCCEEEEESCBCCT
T ss_pred             CccCeeECcCCcCCH
Confidence            555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=8.9e-29  Score=273.94  Aligned_cols=278  Identities=20%  Similarity=0.222  Sum_probs=206.7

Q ss_pred             CCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEcc
Q 036729          547 KKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLS  626 (970)
Q Consensus       547 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  626 (970)
                      +.....+++++.++.....+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCeEeeCCCCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            33344555555555332222  2467777777777776666677777888888888888777777778888888888888


Q ss_pred             CCcCccCCcccCcCcCcccEEEccCCcccCCcc-ccccccCccceEEcccC-cCcCCCCCCCCCCCcceEEEccCCcCcc
Q 036729          627 FNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIP-FWLGSLQEIGELDLSSN-NFNGTVPAEIGNCSKLLKLSLRGNNLSG  704 (970)
Q Consensus       627 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~  704 (970)
                      +|.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..|.++++|++|++++|.+++
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            888876655557778888888888888875444 46777888888888888 4666666778888888888888888888


Q ss_pred             cCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhh---hhhhHhhhhCCCCcccc----
Q 036729          705 KIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGR---LTELQVILDLSKNNFSG----  777 (970)
Q Consensus       705 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~---l~~L~~~L~ls~N~l~g----  777 (970)
                      ..|..+..+++|++|++++|++....+..+..+++|+.|++++|.+++..+..+..   ...++. ++++++.+++    
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~-l~L~~~~l~~~~l~  267 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK-FTFRNVKITDESLF  267 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCE-EEEESCBCCHHHHH
T ss_pred             cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhc-cccccccccCcchh
Confidence            77888888888888888888886555445566788888888888888765554432   334444 6677777665    


Q ss_pred             cCCccccCCCCCCEEeCCCCcCccccCcc-cCCCCcCcEEecCCCcccccCC
Q 036729          778 EIPPSLGSLLKLERLNISYNQLQGQVPAS-LGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       778 ~ip~~~~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      .+|..++++++|++||+++|+++ .+|.. +..+++|++|++++|++.|.+|
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            47888999999999999999999 56655 5899999999999999999998

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.2e-28  Score=265.14  Aligned_cols=250  Identities=24%  Similarity=0.286  Sum_probs=195.3

Q ss_pred             EEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC--CcccCcCcCcccEEEccC
Q 036729          574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ--IAPQLSKCAKLAHLLLSN  651 (970)
Q Consensus       574 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~~~~L~~L~L~~  651 (970)
                      .++++++.++. +|..+  .++|++|++++|+++...+..|..+++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            44455544442 33322  24677777777777754444567777788888887777632  245566677888888888


Q ss_pred             CcccCCccccccccCccceEEcccCcCcCCCC-CCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCcccc-c
Q 036729          652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVP-AEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG-N  729 (970)
Q Consensus       652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~  729 (970)
                      |.++. +|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus        88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Ccccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            87773 56667778888888888888876655 567788888888888888888777788888888888888888876 5


Q ss_pred             cchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCC
Q 036729          730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGK  809 (970)
Q Consensus       730 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~  809 (970)
                      .|..+..+++|+.|++++|++++..|..+..++.|+. |++++|.+++..+..+..+++|++||+++|++++..|..+..
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV-LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE-EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            7778888888888888888888887888888888888 899999998877778899999999999999999999999998


Q ss_pred             CC-cCcEEecCCCcccccCC
Q 036729          810 LT-SLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       810 l~-~L~~l~ls~N~l~g~~p  828 (970)
                      ++ +|++|++++|+++|.++
T Consensus       246 ~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          246 FPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCTTCCEEECTTCCEECSGG
T ss_pred             hhccCCEEEccCCCeecccC
Confidence            84 89999999999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.6e-28  Score=263.40  Aligned_cols=284  Identities=23%  Similarity=0.240  Sum_probs=222.7

Q ss_pred             EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCC--CCcccccCCCCcEEEccCC
Q 036729          551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN--IPSEFGKLTELNFLDLSFN  628 (970)
Q Consensus       551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n  628 (970)
                      .++++++.++.....+  .++++.|++++|.++...+..+..+++|++|++++|.++..  .|..+..+++|++|++++|
T Consensus        11 ~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             EEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            4455555444322222  24677777777777755555577788888888888877632  3566677888899999988


Q ss_pred             cCccCCcccCcCcCcccEEEccCCcccCCcc-ccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcc-cC
Q 036729          629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIP-FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG-KI  706 (970)
Q Consensus       629 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~  706 (970)
                      .+++ +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..
T Consensus        89 ~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           89 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             SEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            8874 56668888899999999998887655 578888999999999999988888888899999999999999887 57


Q ss_pred             CcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCC
Q 036729          707 PPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSL  786 (970)
Q Consensus       707 ~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l  786 (970)
                      |..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..++.|+. ||+++|.+++..|..+..+
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV-LDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE-EECTTSCCCBCSSSSCCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE-eECCCCCCcccCHHHHHhh
Confidence            888889999999999999999888888999999999999999999877778888999998 9999999999999999998


Q ss_pred             C-CCCEEeCCCCcCccccC--cccCCCCcCcEEecCCCcccccCCccccCCCCcc
Q 036729          787 L-KLERLNISYNQLQGQVP--ASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSS  838 (970)
Q Consensus       787 ~-~L~~L~ls~N~l~~~~p--~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~~~~~  838 (970)
                      + +|++|++++|.+++..+  ....-+...+.+.+..+.+.|..|..+.+.+...
T Consensus       247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~  301 (306)
T 2z66_A          247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS  301 (306)
T ss_dssp             CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGG
T ss_pred             hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeee
Confidence            4 99999999999987532  1112233455567778889999887776655443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.6e-28  Score=268.21  Aligned_cols=286  Identities=21%  Similarity=0.218  Sum_probs=174.4

Q ss_pred             CCCCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcC
Q 036729           47 WSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSF  126 (970)
Q Consensus        47 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~  126 (970)
                      |.....+|.|.|+ |+.          +++.++ .+|..+.  ++|++|+|++|.+++..+..+.++++|++|++++|.+
T Consensus        23 ~~~~~~~C~~~~~-c~~----------~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   88 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKG----------SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI   88 (353)
T ss_dssp             ----CCEECTTSE-EEC----------CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCccCCCCCCCeE-eeC----------CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence            4444567999987 753          333333 2333332  3666677776666654444666666777777776666


Q ss_pred             cCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCC-ccccCCceeeEEEcCCC-cCCCCCcc
Q 036729          127 SGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIP-VEIGNLKHLTSLDLQMN-KLSGLIPE  204 (970)
Q Consensus       127 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~Ls~n-~i~~~~~~  204 (970)
                      ++..|..++.+++|++|++++|.+.+..+..++++++|++|++++|++++..+ ..++++++|++|++++| .+++..+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  168 (353)
T 2z80_A           89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK  168 (353)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred             CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence            65555666666677777776666654433446666667777777666663322 35666667777777666 35555556


Q ss_pred             cccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCcccc---CC
Q 036729          205 AIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELN---KL  281 (970)
Q Consensus       205 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~---~l  281 (970)
                      .|.++++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+.   ..
T Consensus       169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~  248 (353)
T 2z80_A          169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN  248 (353)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CC
T ss_pred             HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccccc
Confidence            666667777777777766666666666667777777777666533333334566677777777766655443332   34


Q ss_pred             CCccEEECcCCcCcc----ccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCC
Q 036729          282 AQLEELDLSKNNLSG----SISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEF  347 (970)
Q Consensus       282 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  347 (970)
                      ..++.++++++.+++    .+|..+..+++|++|++++|.++ .+|..++..+++|++|++++|.+.+..
T Consensus       249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            556666666666654    24455666677777777777776 566665555677777777777766543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1e-27  Score=261.29  Aligned_cols=225  Identities=21%  Similarity=0.295  Sum_probs=160.4

Q ss_pred             cCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEc
Q 036729          594 RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL  673 (970)
Q Consensus       594 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  673 (970)
                      ..++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34555555555555 44555555666666666666665 55555666666666666666665 44555666666666666


Q ss_pred             ccCcCcCCCCCCCC---------CCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEE
Q 036729          674 SSNNFNGTVPAEIG---------NCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR  744 (970)
Q Consensus       674 s~N~l~~~~p~~l~---------~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  744 (970)
                      ++|++.+.+|..+.         ++++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|+.|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence            66666666655544         3777888888888777 667777778888888888888775 444677788888888


Q ss_pred             CccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccc
Q 036729          745 LSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQ  824 (970)
Q Consensus       745 Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  824 (970)
                      +++|++.+.+|..++.++.|+. |++++|.+.+.+|..++++++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~-L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCE-EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCE-EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            8888888888888888888887 888888888888888888888888888888888888888888888888888766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.8e-27  Score=269.15  Aligned_cols=250  Identities=23%  Similarity=0.213  Sum_probs=207.6

Q ss_pred             cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729          573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN  652 (970)
Q Consensus       573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n  652 (970)
                      ..++.++..++. +|..+.  ++++.|++++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus        57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            345555555543 344332  56788888888888777888888888888888888888887788888888888888888


Q ss_pred             cccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCc-CcccCCcccccccccceeccCCCccccccc
Q 036729          653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN-LSGKIPPEIGNLTALNVLNLQRNSLSGNIP  731 (970)
Q Consensus       653 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  731 (970)
                      ++++..+..|..+++|++|+|++|++.+..+..|..+++|++|++++|+ +....+..+..+++|++|++++|++++. |
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  212 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P  212 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence            8887777778888888888888888887777788888888888888854 4433344688888899999999988765 3


Q ss_pred             hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729          732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT  811 (970)
Q Consensus       732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~  811 (970)
                       .+..+++|+.|+|++|++++..|..+..++.|+. |++++|.+++..|..|.++++|+.|+|++|++++..+..+..++
T Consensus       213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK-LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE-EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             -cccccccccEEECcCCcCcccCcccccCccCCCE-EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence             4778889999999999999888999999999998 99999999999999999999999999999999988888899999


Q ss_pred             cCcEEecCCCcccccCC
Q 036729          812 SLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       812 ~L~~l~ls~N~l~g~~p  828 (970)
                      +|+.|++++|++.|.+.
T Consensus       291 ~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          291 YLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TCCEEECCSSCEECSTT
T ss_pred             CCCEEEccCCCcCCCCC
Confidence            99999999999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=9.1e-27  Score=265.86  Aligned_cols=250  Identities=23%  Similarity=0.206  Sum_probs=206.0

Q ss_pred             cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729          573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN  652 (970)
Q Consensus       573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n  652 (970)
                      ..++.++..++. +|..+.  ++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        46 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            345555555542 444333  56778888888887777778888888888888888888777778888888888888888


Q ss_pred             cccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCc-CcccCCcccccccccceeccCCCccccccc
Q 036729          653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN-LSGKIPPEIGNLTALNVLNLQRNSLSGNIP  731 (970)
Q Consensus       653 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  731 (970)
                      ++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|+ +....+..|.++++|++|++++|+++.. |
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence            8887777778888888888888888887777778888888888888854 4434444688888888999998888744 3


Q ss_pred             hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729          732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT  811 (970)
Q Consensus       732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~  811 (970)
                       .+..+++|+.|+|++|++++..|..+..++.|+. |++++|.+++..|..|.++++|+.|||++|++++..+..+..++
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK-LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE-EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             -ccCCCcccCEEECCCCccCccChhhhccCccCCE-EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence             4778889999999999999888899999999998 99999999999999999999999999999999998888999999


Q ss_pred             cCcEEecCCCcccccCC
Q 036729          812 SLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       812 ~L~~l~ls~N~l~g~~p  828 (970)
                      +|+.|++++|++.|.+.
T Consensus       280 ~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          280 HLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TCCEEECCSSCEECSST
T ss_pred             CCCEEEcCCCCccCCCC
Confidence            99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.6e-30  Score=307.12  Aligned_cols=428  Identities=14%  Similarity=0.081  Sum_probs=276.8

Q ss_pred             CCCccccCCCCCcEeecCCCcC---cCCCCcCCC------------CCCCCcEEEccCccCCccCCccccCC--cccchh
Q 036729          105 LIPSELGQLQNLRILLLYSNSF---SGKIPPEIG------------FLNKLQVLRIGDNLLWGEIPPHIGNL--TELREL  167 (970)
Q Consensus       105 ~~p~~l~~l~~L~~L~Ls~n~~---~~~~p~~l~------------~l~~L~~L~L~~n~~~~~~p~~l~~l--~~L~~L  167 (970)
                      ..+..+..+++|++|+++++..   .+.+|..++            .+++|++|+|++|.+.+..+..+++.  .+|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            3445667899999999988643   245555554            68899999999998887777777664  449999


Q ss_pred             hcccccc-cc-CCCccccCCceeeEEEcCCCcCCCCC----cccccCCcccccccccccccCC----CCcccccCCCCCc
Q 036729          168 AIAYCQL-NG-SIPVEIGNLKHLTSLDLQMNKLSGLI----PEAIHGCEELQKFAASNNMLEG----TIPSSIVLLKSLQ  237 (970)
Q Consensus       168 ~L~~~~~-~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~  237 (970)
                      ++++|.. +. .++....++++|++|+|++|.+++..    +..+.++++|++|++++|.+++    .++..+..+++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            9998862 11 12233457889999999999887663    3345678889999999888873    3444556788899


Q ss_pred             EEEccCCcCccccCccccCCCCCCEEEccCcccc---ccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEcc
Q 036729          238 ILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFD---GEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLS  314 (970)
Q Consensus       238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  314 (970)
                      +|++++|.+.+ ++..+..+++|++|+++.....   +..+..+..+++|+.|+++++ ..+.++..+..+++|++|+++
T Consensus       224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls  301 (592)
T 3ogk_B          224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL  301 (592)
T ss_dssp             EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET
T ss_pred             EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecC
Confidence            99999888875 5677888889999988764332   233456677888888888775 334556667778888888888


Q ss_pred             CCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCC-----------CcCCCCCCccccccccccc
Q 036729          315 DNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSD-----------NSFKGELPRSLDKLEELTD  383 (970)
Q Consensus       315 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~-----------n~l~~~~~~~l~~l~~L~~  383 (970)
                      +|.+++.....+...+++|++|++..+-..+.++.....|++|++|++++           +.+++..            
T Consensus       302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~------------  369 (592)
T 3ogk_B          302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG------------  369 (592)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH------------
T ss_pred             CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH------------
Confidence            88866544444455677888888873322223333345677777777773           2222110            


Q ss_pred             ccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccC-CCCCCEEEcc----cccCCCc-----CCcccccCCCC
Q 036729          384 LLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK-LQTLSAIYLY----DNQMSGS-----IPRELTNCSGL  453 (970)
Q Consensus       384 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L  453 (970)
                                 ++.....+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.     ++..+.++++|
T Consensus       370 -----------~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L  438 (592)
T 3ogk_B          370 -----------LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL  438 (592)
T ss_dssp             -----------HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred             -----------HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence                       0111223556666666666666554444444 6666776664    4445442     22335567777


Q ss_pred             CEEeccccc--cCCccccccc-CCCCccEEeeccccCCC-CCCCcccccccccEEeccCCcccCc-cCcchhcCCCCceE
Q 036729          454 TEIDFFGNH--FSGSIPETMG-KLKNLVILQLRQNDLSG-PIPASLGYCKRLQQIALADNKLSGS-VPLTFRFLSELYLI  528 (970)
Q Consensus       454 ~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  528 (970)
                      ++|+++.|.  +++.....+. .+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. .+.....+++|+.|
T Consensus       439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred             CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence            777776433  4544444433 36777777777777765 2333445677777777777776544 23334567778888


Q ss_pred             EccccccccCCCccc-cCCCCCcEEEcccc
Q 036729          529 TLYNNSFKGPLPPSL-FQLKKLRIINFSHN  557 (970)
Q Consensus       529 ~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n  557 (970)
                      ++++|+++......+ ..++.+....+..+
T Consensus       519 ~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          519 WVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             ECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            888887765533333 34566666555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.1e-28  Score=265.46  Aligned_cols=246  Identities=22%  Similarity=0.260  Sum_probs=210.1

Q ss_pred             CcccEEECCCCCCCCCCCcccccCcCCCceeccCccc-cCCCCcccc-------cCCCCcEEEccCCcCccCCcccC--c
Q 036729          570 NSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHL-TGNIPSEFG-------KLTELNFLDLSFNSFTGQIAPQL--S  639 (970)
Q Consensus       570 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~~~~l--~  639 (970)
                      ++|+.+++++|.+  .+|..+...  |+.|++++|.+ .+.+|..+.       ++++|++|++++|.+++.+|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            4566677777777  567666544  89999999988 455666665       78999999999999999888876  8


Q ss_pred             CcCcccEEEccCCcccCCcccccccc-----CccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccC--Cccc--
Q 036729          640 KCAKLAHLLLSNNELTGTIPFWLGSL-----QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI--PPEI--  710 (970)
Q Consensus       640 ~~~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--~~~l--  710 (970)
                      .+++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..|+.+++|++|++++|++.+.+  |..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            999999999999999988 8888877     99999999999999988899999999999999999987652  3334  


Q ss_pred             ccccccceeccCCCccccc---cchhhhcccCCcEEECccccccccCc-hhhhhhhhhHhhhhCCCCcccccCCccccCC
Q 036729          711 GNLTALNVLNLQRNSLSGN---IPSTIQQCKKLYELRLSENFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSL  786 (970)
Q Consensus       711 ~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l  786 (970)
                      ..+++|++|++++|++++.   ....+..+++|+.|++++|++++.+| ..+..++.|+. |++++|.++ .+|..+.  
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~-L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS-LNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE-EECTTSCCS-SCCSSCC--
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE-EECCCCccC-hhhhhcc--
Confidence            7899999999999999842   23445678999999999999999886 45667889998 999999999 8888877  


Q ss_pred             CCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729          787 LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ  826 (970)
Q Consensus       787 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~  826 (970)
                      ++|++||+++|++++. |. +..+++|++|++++|++++.
T Consensus       274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            8999999999999987 66 99999999999999999864

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.7e-27  Score=251.05  Aligned_cols=209  Identities=25%  Similarity=0.233  Sum_probs=112.0

Q ss_pred             CCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCc-CcCCCCCCCCCCCcceEEEc
Q 036729          619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN-FNGTVPAEIGNCSKLLKLSL  697 (970)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L  697 (970)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..|..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444444444444444444444444444444444444444444444444444 44333444444555555555


Q ss_pred             cCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccc
Q 036729          698 RGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG  777 (970)
Q Consensus       698 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g  777 (970)
                      ++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..++.|+. |++++|.+++
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~  191 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR-LLLHQNRVAH  191 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCCE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE-EECCCCcccc
Confidence            555555444444555555555555555555444444555555555555555555444444555555555 5666666665


Q ss_pred             cCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          778 EIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       778 ~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      ..|..++++++|+.|++++|++++..|..+..+++|++|++++|++.|.++
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            556666666666666666666666555556666666666666666666665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.7e-26  Score=247.41  Aligned_cols=258  Identities=22%  Similarity=0.204  Sum_probs=230.1

Q ss_pred             cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729          573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN  652 (970)
Q Consensus       573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n  652 (970)
                      +.++.+++.++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            678899888875 34433  468999999999999888888999999999999999999988999999999999999999


Q ss_pred             c-ccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccc
Q 036729          653 E-LTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP  731 (970)
Q Consensus       653 ~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  731 (970)
                      . +....|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            8 887778899999999999999999999889999999999999999999998888889999999999999999998888


Q ss_pred             hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729          732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT  811 (970)
Q Consensus       732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~  811 (970)
                      ..+..+++|+.|++++|.+++..|..+..++.|+. |++++|.+++..+..+..+++|+.|++++|.+....+.. .-..
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~  248 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT-LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA  248 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccE-eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence            88999999999999999999999999999999998 999999999887788999999999999999998754432 1124


Q ss_pred             cCcEEecCCCcccccCCccccCCC
Q 036729          812 SLHVLNLSNNHLQGQLPLTFSGFP  835 (970)
Q Consensus       812 ~L~~l~ls~N~l~g~~p~~~~~~~  835 (970)
                      .++.++.+.+.+.|..|..+.+..
T Consensus       249 ~l~~~~~~~~~~~c~~p~~l~g~~  272 (285)
T 1ozn_A          249 WLQKFRGSSSEVPCSLPQRLAGRD  272 (285)
T ss_dssp             HHHHCCSEECCCBEEESGGGTTCB
T ss_pred             HHHhcccccCccccCCchHhCCcC
Confidence            566677889999999997766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.5e-26  Score=261.13  Aligned_cols=228  Identities=24%  Similarity=0.240  Sum_probs=179.1

Q ss_pred             CCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhc
Q 036729           90 TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAI  169 (970)
Q Consensus        90 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  169 (970)
                      +++++|+|++|.+++..|..|+++++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..+.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57888888888888777888888888888888888888777778888888888888888887666666788888888888


Q ss_pred             cccccccCCCccccCCceeeEEEcCCC-cCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 036729          170 AYCQLNGSIPVEIGNLKHLTSLDLQMN-KLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG  248 (970)
Q Consensus       170 ~~~~~~~~~p~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  248 (970)
                      ++|++.+..+..+.++++|++|++++| .+....+..|.++++|++|++++|.+++. | .+..+++|++|+|++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence            888887666667888888888888874 45544555677788888888888877743 3 46777788888888888887


Q ss_pred             ccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCccc
Q 036729          249 SIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT  319 (970)
Q Consensus       249 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  319 (970)
                      ..|..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++|.+.
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            77777888888888888888888777777778888888888888887777777777777888887777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.2e-28  Score=265.31  Aligned_cols=265  Identities=23%  Similarity=0.239  Sum_probs=128.1

Q ss_pred             CCCCCCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCC-CCCCCcccc-------CCCCC
Q 036729           45 ENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSL-TGLIPSELG-------QLQNL  116 (970)
Q Consensus        45 ~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~p~~l~-------~l~~L  116 (970)
                      .+|.....|+.|..+.......+++.++++++.+  .+|..+...  |++|+|++|.+ .+.+|..+.       ++++|
T Consensus        22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L   97 (312)
T 1wwl_A           22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL   97 (312)
T ss_dssp             CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred             cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence            3454444455554433221223445555555555  444433333  55556666555 234454444       55666


Q ss_pred             cEeecCCCcCcCCCCcCC--CCCCCCcEEEccCccCCccCCccccCC-----cccchhhccccccccCCCccccCCceee
Q 036729          117 RILLLYSNSFSGKIPPEI--GFLNKLQVLRIGDNLLWGEIPPHIGNL-----TELRELAIAYCQLNGSIPVEIGNLKHLT  189 (970)
Q Consensus       117 ~~L~Ls~n~~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p~~l~~l-----~~L~~L~L~~~~~~~~~p~~l~~l~~L~  189 (970)
                      ++|+|++|.+++.+|..+  +.+++|++|++++|.+.+. |..++.+     ++|++|++++|++.+..|..++++++|+
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            666666666665555554  5566666666666665544 5444444     5555555555555554445555555555


Q ss_pred             EEEcCCCcCCCC--Ccccc--cCCcccccccccccccCC--CCc-ccccCCCCCcEEEccCCcCccccC-ccccCCCCCC
Q 036729          190 SLDLQMNKLSGL--IPEAI--HGCEELQKFAASNNMLEG--TIP-SSIVLLKSLQILNLANNSLSGSIP-VELSHLFNLR  261 (970)
Q Consensus       190 ~L~Ls~n~i~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~  261 (970)
                      +|++++|++.+.  .+..+  .++++|++|++++|.+++  .++ ..+..+++|++|++++|.+++..| ..+..+++|+
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            555555554433  12222  445555555555555442  111 122344455555555555544432 2233344455


Q ss_pred             EEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCccc
Q 036729          262 YLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT  319 (970)
Q Consensus       262 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  319 (970)
                      +|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|.++
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            5555555444 3333333  4444444444444443 22 444444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.9e-25  Score=253.43  Aligned_cols=248  Identities=22%  Similarity=0.229  Sum_probs=205.2

Q ss_pred             CcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCC
Q 036729          549 LRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN  628 (970)
Q Consensus       549 L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  628 (970)
                      .+.++.++..++.....+  .++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            345555555554332222  256778888888888777788888888888888888888777788888999999999999


Q ss_pred             cCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCc-CcCCCCCCCCCCCcceEEEccCCcCcccCC
Q 036729          629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN-FNGTVPAEIGNCSKLLKLSLRGNNLSGKIP  707 (970)
Q Consensus       629 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  707 (970)
                      ++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|+ +....+..|.++++|++|++++|+++.. |
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence            9887777788888999999999999887777788889999999999854 4444445788899999999999998843 4


Q ss_pred             cccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCC
Q 036729          708 PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL  787 (970)
Q Consensus       708 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~  787 (970)
                       .+..+++|++|++++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+. |+|++|.+++..+..|..++
T Consensus       202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE-INLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE-EECTTSCCCCCCTTTTSSCT
T ss_pred             -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE-EECCCCCCCccChhHhcccc
Confidence             4788889999999999999888899999999999999999999888888999999998 99999999988888889999


Q ss_pred             CCCEEeCCCCcCcc
Q 036729          788 KLERLNISYNQLQG  801 (970)
Q Consensus       788 ~L~~L~ls~N~l~~  801 (970)
                      +|+.|+|++|.+..
T Consensus       280 ~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          280 HLERIHLHHNPWNC  293 (440)
T ss_dssp             TCCEEECCSSCEEC
T ss_pred             CCCEEEcCCCCccC
Confidence            99999999998753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.2e-27  Score=257.98  Aligned_cols=246  Identities=22%  Similarity=0.207  Sum_probs=164.2

Q ss_pred             CCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEE
Q 036729          568 GSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHL  647 (970)
Q Consensus       568 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L  647 (970)
                      .+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            34566677777777666666667777777777777777765443  667777777777777776432     23667777


Q ss_pred             EccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccc-ccccccceeccCCCcc
Q 036729          648 LLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSL  726 (970)
Q Consensus       648 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~L~~N~l  726 (970)
                      ++++|.+++..+..   +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|++
T Consensus       105 ~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             ECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            77777776554433   4567777777777776666667777777777777777776655555 3567777777777777


Q ss_pred             ccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc-cccCc
Q 036729          727 SGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ-GQVPA  805 (970)
Q Consensus       727 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~-~~~p~  805 (970)
                      ++..+  ...+++|+.|++++|++++ +|..+..++.|+. |++++|.++ .+|..+..+++|+.|++++|.++ +.+|.
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~-L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW-ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE-EECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred             ccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccE-EECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence            65522  2236677777777777774 3444667777776 777777777 35666777777777777777776 66666


Q ss_pred             ccCCCCcCcEEecC-CCcccccCC
Q 036729          806 SLGKLTSLHVLNLS-NNHLQGQLP  828 (970)
Q Consensus       806 ~l~~l~~L~~l~ls-~N~l~g~~p  828 (970)
                      .+..++.|+.++++ .+.++|..|
T Consensus       257 ~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          257 FFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             HHhccccceEEECCCchhccCCch
Confidence            77777777777776 344555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.2e-25  Score=263.25  Aligned_cols=287  Identities=28%  Similarity=0.323  Sum_probs=176.5

Q ss_pred             CCCCCCCCCCCCCccceEec------CCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCC
Q 036729           43 ILENWSARAHMCSWHGVTCS------DDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNL  116 (970)
Q Consensus        43 ~~~~w~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L  116 (970)
                      .++.|....+||.|+|..|.      .....++.|++++++++ .+|..+.  ++|++|+|++|.++ .+|.   .+++|
T Consensus        11 ~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L   83 (622)
T 3g06_A           11 VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL   83 (622)
T ss_dssp             HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred             HHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence            34567667789999774321      11235889999999988 6676665  78999999999888 4565   57889


Q ss_pred             cEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCC
Q 036729          117 RILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMN  196 (970)
Q Consensus       117 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n  196 (970)
                      ++|+|++|.++ .+|.   .+++|++|++++|.+.+ +|.   .+++|++|++++|++++ +|..   +++|++|++++|
T Consensus        84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N  151 (622)
T 3g06_A           84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN  151 (622)
T ss_dssp             CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred             CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence            99999999887 5665   67889999999888764 343   45677788888887764 4443   367777777777


Q ss_pred             cCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCc
Q 036729          197 KLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPS  276 (970)
Q Consensus       197 ~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~  276 (970)
                      ++++.. .   ..++|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++. +|.
T Consensus       152 ~l~~l~-~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~  218 (622)
T 3g06_A          152 QLASLP-A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA  218 (622)
T ss_dssp             CCSCCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC
T ss_pred             cCCCcC-C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC
Confidence            777542 1   23556666666666663 33   334566666666666653 332   13556666666665553 222


Q ss_pred             cccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCCCCccccccCCC
Q 036729          277 ELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSS  356 (970)
Q Consensus       277 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  356 (970)
                         .+++|++|++++|.+++. |   ..+++|+.|++++|.++ .+|.                            .+++
T Consensus       219 ---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~----------------------------~~~~  262 (622)
T 3g06_A          219 ---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM----------------------------LPSG  262 (622)
T ss_dssp             ---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC----------------------------CCTT
T ss_pred             ---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc----------------------------cccc
Confidence               134555555555555542 2   23345555555555554 2332                            3344


Q ss_pred             CCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcC
Q 036729          357 LQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPE  398 (970)
Q Consensus       357 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  398 (970)
                      |+.|++++|+++ .+|..+..+++|+.|++++|++++..|..
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            555555555555 34445555555555555555555444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.6e-26  Score=265.88  Aligned_cols=234  Identities=22%  Similarity=0.204  Sum_probs=113.0

Q ss_pred             cccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEcc
Q 036729          571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLS  650 (970)
Q Consensus       571 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~  650 (970)
                      +|+.|++++|.+++..|..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            45555555555555445555555555555555555554333  5555555555555555553221     2445555555


Q ss_pred             CCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccc-cccccceeccCCCccccc
Q 036729          651 NNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIG-NLTALNVLNLQRNSLSGN  729 (970)
Q Consensus       651 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~  729 (970)
                      +|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+++.+|..+. .+++|++|+|++|.+++.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            5555544332   234455555555555554444455555555555555555554444443 445555555555555443


Q ss_pred             cchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc-cccCcccC
Q 036729          730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ-GQVPASLG  808 (970)
Q Consensus       730 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~-~~~p~~l~  808 (970)
                      .+  ...+++|+.|+|++|.+++. |..+..++.|+. |++++|.+++ +|..++.+++|+.|++++|.+. +.+|..+.
T Consensus       185 ~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~-L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          185 KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTW-ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSE-EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             cc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccE-EEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            22  12344555555555555432 222444444444 4455544443 3444444444455555544444 34444444


Q ss_pred             CCCcCcEEecC
Q 036729          809 KLTSLHVLNLS  819 (970)
Q Consensus       809 ~l~~L~~l~ls  819 (970)
                      .++.|+.++++
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            44444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=250.66  Aligned_cols=266  Identities=19%  Similarity=0.184  Sum_probs=180.8

Q ss_pred             cEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEcccc
Q 036729          478 VILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN  557 (970)
Q Consensus       478 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n  557 (970)
                      +..+++.+.+.......+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+  +..+++|++|++++|
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            344444444433333334445556666666666655555555555555555555555544332  444455555555554


Q ss_pred             ccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCccc
Q 036729          558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ  637 (970)
Q Consensus       558 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~  637 (970)
                      .+++.                            ...++|+.|++++|++++..+.   .+++|++|++++|++++..+..
T Consensus        91 ~l~~l----------------------------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~  139 (317)
T 3o53_A           91 YVQEL----------------------------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD  139 (317)
T ss_dssp             EEEEE----------------------------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC
T ss_pred             ccccc----------------------------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh
Confidence            44321                            1225666777777766654332   3567888888888888777777


Q ss_pred             CcCcCcccEEEccCCcccCCccccc-cccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccccc
Q 036729          638 LSKCAKLAHLLLSNNELTGTIPFWL-GSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL  716 (970)
Q Consensus       638 l~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L  716 (970)
                      +..+++|++|++++|.+++..+..+ ..+++|++|++++|++++..+  ...+++|++|++++|++++. |..+..+++|
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L  216 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGV  216 (317)
T ss_dssp             TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred             hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcc
Confidence            8888888888888888887766666 467888888888888886532  33488899999999988864 4458888899


Q ss_pred             ceeccCCCccccccchhhhcccCCcEEECcccccc-ccCchhhhhhhhhHhhhhCC-CCcccccCCc
Q 036729          717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT-GSIPADLGRLTELQVILDLS-KNNFSGEIPP  781 (970)
Q Consensus       717 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~~L~ls-~N~l~g~ip~  781 (970)
                      ++|++++|++++ +|..+..+++|+.|++++|+++ +.+|..+..++.|+. ++++ .+.++|..|.
T Consensus       217 ~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~-l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT-VAKQTVKKLTGQNEE  281 (317)
T ss_dssp             SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH-HHHHHHHHHHSSSSC
T ss_pred             cEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE-EECCCchhccCCchh
Confidence            999999998884 5777888889999999999998 777888888888887 8887 4456665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=6.7e-25  Score=233.68  Aligned_cols=209  Identities=27%  Similarity=0.267  Sum_probs=171.6

Q ss_pred             CCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEc
Q 036729          618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSL  697 (970)
Q Consensus       618 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  697 (970)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46777777777777766667777777888888888777666667777888888888888888777777888888888888


Q ss_pred             cCCcCcccCCcccccccccceeccCCCccccc-cchhhhcccCCcEEECccccccccCchhhhhhhhhH----hhhhCCC
Q 036729          698 RGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN-IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQ----VILDLSK  772 (970)
Q Consensus       698 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~~L~ls~  772 (970)
                      ++|.+.+..+..+..+++|++|++++|++++. +|..+..+++|+.|++++|++++..+..+..+..++    . +++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~-L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-LDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE-EECCS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee-eecCC
Confidence            88888877666788888888888888888764 578888888899999999988887777888777776    5 89999


Q ss_pred             CcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          773 NNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       773 N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      |.+++..+..+.. .+|+.|++++|++++..+..+..+++|+.|++++|+++|.+|
T Consensus       187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            9999776666554 489999999999998877888999999999999999999998

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=8.4e-25  Score=231.80  Aligned_cols=217  Identities=28%  Similarity=0.316  Sum_probs=144.2

Q ss_pred             CCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCC
Q 036729           51 AHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI  130 (970)
Q Consensus        51 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~  130 (970)
                      .++|.|.|+.|.. .+.++.++++++.++. +|..+.  +++++|+|++|.+++..+..++++++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            4789999999973 3466789999998884 555443  67899999999988766678888999999999988888544


Q ss_pred             CcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCc
Q 036729          131 PPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCE  210 (970)
Q Consensus       131 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~  210 (970)
                      +..+..+++|++|++++|.+.+..+..+.++++|++|++++|++++..+..++.+++|++|++++|++++..+..     
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----  152 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV-----  152 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH-----
Confidence            445677888888888888776555555556666666666666655554445555555555555555555444433     


Q ss_pred             ccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECc
Q 036729          211 ELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLS  290 (970)
Q Consensus       211 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  290 (970)
                                         +..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus       153 -------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          153 -------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             -------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             -------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence                               4455555555555555554444445555666666666666655544556666666666666


Q ss_pred             CCcCc
Q 036729          291 KNNLS  295 (970)
Q Consensus       291 ~n~l~  295 (970)
                      +|.+.
T Consensus       214 ~N~~~  218 (270)
T 2o6q_A          214 ENPWD  218 (270)
T ss_dssp             SSCBC
T ss_pred             CCCee
Confidence            66554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.1e-29  Score=300.76  Aligned_cols=449  Identities=12%  Similarity=0.110  Sum_probs=234.4

Q ss_pred             CCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCC---CC------------ccccCCCCCc
Q 036729           53 MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGL---IP------------SELGQLQNLR  117 (970)
Q Consensus        53 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~p------------~~l~~l~~L~  117 (970)
                      |++|.++...    ..+.+++.+.... .....+..+++|++|+|+++.....   .|            .....+++|+
T Consensus        34 ck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~  108 (594)
T 2p1m_B           34 CKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE  108 (594)
T ss_dssp             CHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred             HHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence            4578887221    2334555443211 1123456788999999998753211   11            1234677888


Q ss_pred             EeecCCCcCcCCCCcCCC-CCCCCcEEEccCcc-CCcc-CCccccCCcccchhhccccccccCCCcccc----CCceeeE
Q 036729          118 ILLLYSNSFSGKIPPEIG-FLNKLQVLRIGDNL-LWGE-IPPHIGNLTELRELAIAYCQLNGSIPVEIG----NLKHLTS  190 (970)
Q Consensus       118 ~L~Ls~n~~~~~~p~~l~-~l~~L~~L~L~~n~-~~~~-~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~----~l~~L~~  190 (970)
                      +|+|++|.+++..+..+. .+++|++|++++|. +... ++..+.++++|++|++++|.+++..+..+.    .+++|++
T Consensus       109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~  188 (594)
T 2p1m_B          109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS  188 (594)
T ss_dssp             EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred             eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence            888888887766555554 57788888888873 3322 344445677888888888776654443333    5567777


Q ss_pred             EEcCCCcCCCCCccc----ccCCcccccccccccccCCCCcccccCCCCCcEEEccCCc-------CccccCccccCCCC
Q 036729          191 LDLQMNKLSGLIPEA----IHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS-------LSGSIPVELSHLFN  259 (970)
Q Consensus       191 L~Ls~n~i~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~  259 (970)
                      |++++|. .......    +.++++|++|++++|...+.++..+..+++|++|++..+.       +.+ ++..+.++++
T Consensus       189 L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~  266 (594)
T 2p1m_B          189 LNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKE  266 (594)
T ss_dssp             EECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTT
T ss_pred             EEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCC
Confidence            7777775 1111121    2345677777776663222255556666677777654432       222 2234556666


Q ss_pred             CCEE-EccCccccccCCccccCCCCccEEECcCCcCccccc-cccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEE
Q 036729          260 LRYL-NLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSIS-LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLI  337 (970)
Q Consensus       260 L~~L-~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  337 (970)
                      |+.| .+.... .+.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+.....+...+++|++|+
T Consensus       267 L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~  344 (594)
T 2p1m_B          267 LRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR  344 (594)
T ss_dssp             CCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred             cccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence            6666 222221 12233333455666666666665443221 22345566666666655 22111122222345555555


Q ss_pred             ccC---------CcCCCCCccccc-cCCCCCEEeCCCCcCCCCCCcccccccccccccCCcccccCCCCcCCCCcCCCCe
Q 036729          338 LAR---------NKLSGEFPLELL-RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLEN  407 (970)
Q Consensus       338 L~~---------n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  407 (970)
                      +..         +.+++.....+. .+++|++|.++.+.+++..+..+.                       ..+++|+.
T Consensus       345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-----------------------~~~~~L~~  401 (594)
T 2p1m_B          345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-----------------------RNRPNMTR  401 (594)
T ss_dssp             EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-----------------------HHCTTCCE
T ss_pred             EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-----------------------hhCCCcce
Confidence            522         122211111111 244555554444444332222221                       13455555


Q ss_pred             eecc--c----ccccc-----cCCccccCCCCCCEEEcccccCCCcCCccccc-CCCCCEEeccccccCCcccccc-cCC
Q 036729          408 LFLF--D----NMITG-----KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTN-CSGLTEIDFFGNHFSGSIPETM-GKL  474 (970)
Q Consensus       408 L~L~--~----n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~-~~l  474 (970)
                      |+++  +    +.+++     .++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++.....+ ..+
T Consensus       402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  480 (594)
T 2p1m_B          402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC  480 (594)
T ss_dssp             EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred             eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence            5555  2    22221     1111244556677777755 444433334433 6677777777777665444443 456


Q ss_pred             CCccEEeeccccCCCCCCC-cccccccccEEeccCCcccCccCcch-hcCCCCceEEccccc
Q 036729          475 KNLVILQLRQNDLSGPIPA-SLGYCKRLQQIALADNKLSGSVPLTF-RFLSELYLITLYNNS  534 (970)
Q Consensus       475 ~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~  534 (970)
                      ++|+.|++++|.+++.... ....+++|+.|++++|+++......+ ..++.++...+..+.
T Consensus       481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            7777777777776433222 33456777777777777643333333 455666665555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1e-25  Score=259.22  Aligned_cols=227  Identities=22%  Similarity=0.222  Sum_probs=200.8

Q ss_pred             cCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceE
Q 036729          592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGEL  671 (970)
Q Consensus       592 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  671 (970)
                      .+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            44589999999999999888999999999999999999998766  8999999999999999986433     3899999


Q ss_pred             EcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhh-cccCCcEEECccccc
Q 036729          672 DLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQ-QCKKLYELRLSENFF  750 (970)
Q Consensus       672 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l  750 (970)
                      ++++|.+++..+..   +++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+. .+++|+.|+|++|.+
T Consensus       105 ~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            99999999876653   58899999999999999999999999999999999999999888886 799999999999999


Q ss_pred             cccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccc-cCCc
Q 036729          751 TGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQG-QLPL  829 (970)
Q Consensus       751 ~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g-~~p~  829 (970)
                      ++..+  ...++.|+. |+|++|.+++..| .++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.| .+|.
T Consensus       182 ~~~~~--~~~l~~L~~-L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          182 YDVKG--QVVFAKLKT-LDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CEEEC--CCCCTTCCE-EECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             ccccc--cccCCCCCE-EECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            97633  335889998 9999999997554 59999999999999999996 78889999999999999999994 4454


Q ss_pred             cccC
Q 036729          830 TFSG  833 (970)
Q Consensus       830 ~~~~  833 (970)
                      .+..
T Consensus       257 ~~~~  260 (487)
T 3oja_A          257 FFSK  260 (487)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            4433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=3.7e-23  Score=242.17  Aligned_cols=269  Identities=22%  Similarity=0.295  Sum_probs=170.8

Q ss_pred             CCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEecc
Q 036729          428 TLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALA  507 (970)
Q Consensus       428 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  507 (970)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++. +|.   .+++|++|++++|++++ +|.   .+++|+.|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            4566666666665 4444433  566666666666653 332   34556666666665553 232   34555555555


Q ss_pred             CCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCC
Q 036729          508 DNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIP  587 (970)
Q Consensus       508 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~  587 (970)
                      +|.+++..+                            .+++|+.|++++|.+++...   .+++|+.|++++|.+++. |
T Consensus       110 ~N~l~~l~~----------------------------~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-~  157 (622)
T 3g06_A          110 SNPLTHLPA----------------------------LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-P  157 (622)
T ss_dssp             SCCCCCCCC----------------------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-C
T ss_pred             CCcCCCCCC----------------------------CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCc-C
Confidence            555543222                            23445555555555543211   125566666666666542 2


Q ss_pred             cccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCc
Q 036729          588 SELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQE  667 (970)
Q Consensus       588 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~  667 (970)
                      .   .+.+|+.|++++|.+++ +|   ..+++|+.|++++|.+++ +|..   .++|+.|++++|.++. +|.   .+++
T Consensus       158 ~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~  222 (622)
T 3g06_A          158 A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSG  222 (622)
T ss_dssp             C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTT
T ss_pred             C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCC
Confidence            2   23567777777777764 44   445778888888888775 3332   3678888888888774 343   2477


Q ss_pred             cceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcc
Q 036729          668 IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSE  747 (970)
Q Consensus       668 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  747 (970)
                      |+.|++++|++++ +|   ..+++|++|++++|+++. +|.   .+++|+.|++++|+++ .+|..+.++++|+.|+|++
T Consensus       223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred             CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence            8888888888886 44   446788888888888884 444   5678888888888888 5677888888899999999


Q ss_pred             ccccccCchhhhhhhh
Q 036729          748 NFFTGSIPADLGRLTE  763 (970)
Q Consensus       748 N~l~~~ip~~l~~l~~  763 (970)
                      |++++.+|..+..++.
T Consensus       294 N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          294 NPLSERTLQALREITS  309 (622)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHhccc
Confidence            9888888877776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=9.4e-28  Score=286.42  Aligned_cols=447  Identities=14%  Similarity=0.158  Sum_probs=292.9

Q ss_pred             cEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcC---CCCcC------------CCCCCCCcEEEccCccCCccCCcc
Q 036729           93 ETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSG---KIPPE------------IGFLNKLQVLRIGDNLLWGEIPPH  157 (970)
Q Consensus        93 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~---~~p~~------------l~~l~~L~~L~L~~n~~~~~~p~~  157 (970)
                      +.++++.+... .....+.++++|++|+++++....   ..|..            ...+++|++|++++|.+.+..+..
T Consensus        46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            45666554332 122356789999999999976321   22222            135789999999999888777776


Q ss_pred             cc-CCcccchhhcccc-ccccC-CCccccCCceeeEEEcCCCcCCCCCccccc----CCcccccccccccc--cCCC-Cc
Q 036729          158 IG-NLTELRELAIAYC-QLNGS-IPVEIGNLKHLTSLDLQMNKLSGLIPEAIH----GCEELQKFAASNNM--LEGT-IP  227 (970)
Q Consensus       158 l~-~l~~L~~L~L~~~-~~~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~  227 (970)
                      +. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+.    .+++|++|++++|.  ++.. ++
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            75 6889999999988 44432 344455789999999999988876655543    66788888888886  2211 11


Q ss_pred             ccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCcc-------ccccCCccccCCCCccEE-ECcCCcCccccc
Q 036729          228 SSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNI-------FDGEIPSELNKLAQLEEL-DLSKNNLSGSIS  299 (970)
Q Consensus       228 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------~~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~  299 (970)
                      ..+..+++|++|++++|...+.++..+..+++|++|++..+.       +.+ ++..+.++++|+.| .+.+.. .+.++
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~  282 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLP  282 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGG
T ss_pred             HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHH
Confidence            222456888888888884333466677788888888865543       232 33467778888888 343322 22344


Q ss_pred             cccCCCCCccEEEccCCcccCCCchhhhcCCCCCcEEEccCCcCCC-CCccccccCCCCCEEeCCCCcCCCCCCcccccc
Q 036729          300 LLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSG-EFPLELLRCSSLQQLDLSDNSFKGELPRSLDKL  378 (970)
Q Consensus       300 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l  378 (970)
                      ..+..+++|++|++++|.+++.....+...+++|++|++.+| +.. .++.....+++|++|+++.+.-.|         
T Consensus       283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------  352 (594)
T 2p1m_B          283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV---------  352 (594)
T ss_dssp             GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC---------
T ss_pred             HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc---------
Confidence            444467788888888887664444444556777777777776 322 122222346777777775442110         


Q ss_pred             cccccccCCcccccCCCCcCC-CCcCCCCeeecccccccccCCcccc-CCCCCCEEEcc--c----ccCCCc-----CCc
Q 036729          379 EELTDLLLNNNSFTGSFPPEI-GNLSKLENLFLFDNMITGKIPVEIG-KLQTLSAIYLY--D----NQMSGS-----IPR  445 (970)
Q Consensus       379 ~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~-----~~~  445 (970)
                            ....+.+++.....+ ..+++|++|.+..+.+++..+..+. .+++|+.|+++  +    +.+++.     ++.
T Consensus       353 ------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~  426 (594)
T 2p1m_B          353 ------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA  426 (594)
T ss_dssp             ------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred             ------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence                  001112221111112 2468899998888888776555554 58999999999  3    444421     222


Q ss_pred             ccccCCCCCEEeccccccCCcccccccC-CCCccEEeeccccCCCCCCCcc-cccccccEEeccCCcccCccCc-chhcC
Q 036729          446 ELTNCSGLTEIDFFGNHFSGSIPETMGK-LKNLVILQLRQNDLSGPIPASL-GYCKRLQQIALADNKLSGSVPL-TFRFL  522 (970)
Q Consensus       446 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~~~-~~~~l  522 (970)
                      .+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+
T Consensus       427 l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l  505 (594)
T 2p1m_B          427 IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL  505 (594)
T ss_dssp             HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred             HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence            367889999999987 666655555655 8999999999999876544444 6789999999999999654443 34568


Q ss_pred             CCCceEEccccccccCCCccc-cCCCCCcEEEcccccc
Q 036729          523 SELYLITLYNNSFKGPLPPSL-FQLKKLRIINFSHNKF  559 (970)
Q Consensus       523 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l  559 (970)
                      ++|+.|++++|.++......+ ..++.++...+..+..
T Consensus       506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            999999999999854333333 4577887777766543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=2.1e-23  Score=221.03  Aligned_cols=205  Identities=23%  Similarity=0.236  Sum_probs=144.3

Q ss_pred             CcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccC
Q 036729          620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRG  699 (970)
Q Consensus       620 L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  699 (970)
                      .+.++++++.++. +|..+.  +++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4455555555553 333332  3456666666666555555566666666666666666655445556666666666666


Q ss_pred             CcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC
Q 036729          700 NNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI  779 (970)
Q Consensus       700 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i  779 (970)
                      |.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..++.|+. |++++|.+++..
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~  173 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE-LRLYNNQLKRVP  173 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce-eEecCCcCcEeC
Confidence            6666555555666667777777777776666666677777777777777777555555677777777 778888887777


Q ss_pred             CccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          780 PPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       780 p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +..|.++++|++|++++|++++..+..+..+++|+.|++++|++.|.++
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            7778899999999999999998777789999999999999999999886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2e-23  Score=222.28  Aligned_cols=209  Identities=21%  Similarity=0.220  Sum_probs=171.0

Q ss_pred             cCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEc
Q 036729          594 RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL  673 (970)
Q Consensus       594 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  673 (970)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46777888888777766667788888888888888888777777888888888888888888777777888888888888


Q ss_pred             ccCcCcCCCCCCCCCCCcceEEEccCCcCccc-CCcccccccccceeccCCCccccccchhhhcccCCc----EEECccc
Q 036729          674 SSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGK-IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY----ELRLSEN  748 (970)
Q Consensus       674 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~Ls~N  748 (970)
                      ++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..++.|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            88888877776788888888888888888764 578888888999999999988888777777777776    8999999


Q ss_pred             cccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccC
Q 036729          749 FFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP  804 (970)
Q Consensus       749 ~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p  804 (970)
                      ++++..+..+ ....|+. |++++|.+++..+..++++++|+.|++++|++++..|
T Consensus       188 ~l~~~~~~~~-~~~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAF-KEIRLKE-LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSS-CSCCEEE-EECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccCcccc-CCCcccE-EECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            9986555444 3447887 9999999998777778999999999999999987543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=6.9e-24  Score=224.92  Aligned_cols=227  Identities=19%  Similarity=0.173  Sum_probs=183.6

Q ss_pred             CCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcc
Q 036729          595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLS  674 (970)
Q Consensus       595 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  674 (970)
                      .+..+++..+.+...  .....+++|+.|++++|.++..  +.+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            344555666555433  3456778888888888887742  3477788888888888888764  367788888888888


Q ss_pred             cCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccC
Q 036729          675 SNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSI  754 (970)
Q Consensus       675 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i  754 (970)
                      +|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            88888877777888888888899888888777777888888999999999888888777888899999999999998777


Q ss_pred             chhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCccccCC
Q 036729          755 PADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGF  834 (970)
Q Consensus       755 p~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~~~~~~  834 (970)
                      |..++.++.|+. |++++|.+++..|..++.+++|+.|++++|.+.+.       ++.|+.++++.|.++|.+|..+...
T Consensus       174 ~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          174 EGVFDKLTQLKD-LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             HHHhcCCccCCE-EECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            777888888988 99999999988888889999999999999988865       4468899999999999999766544


Q ss_pred             C
Q 036729          835 P  835 (970)
Q Consensus       835 ~  835 (970)
                      .
T Consensus       246 ~  246 (272)
T 3rfs_A          246 A  246 (272)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.1e-23  Score=218.22  Aligned_cols=185  Identities=24%  Similarity=0.259  Sum_probs=100.1

Q ss_pred             cccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccc
Q 036729          590 LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG  669 (970)
Q Consensus       590 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  669 (970)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            44445555555555555431  2455555555555555555555555555555555555555555555555555555555


Q ss_pred             eEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccc
Q 036729          670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENF  749 (970)
Q Consensus       670 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  749 (970)
                      +|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            55555555555555455555555555555555555544445555555555555555555555555555555555555555


Q ss_pred             ccccCchhhhhhhhhHhhhhCCCCcccccCCcccc
Q 036729          750 FTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLG  784 (970)
Q Consensus       750 l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~  784 (970)
                      +.+..|       .++. ++++.|.++|.+|..++
T Consensus       217 ~~~~~~-------~l~~-l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          217 WDCTCP-------GIRY-LSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             BCCCTT-------TTHH-HHHHHHHTGGGBBCTTS
T ss_pred             ccccCc-------HHHH-HHHHHHhCCCcccCccc
Confidence            554322       2333 44445555555554444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=6.8e-23  Score=218.77  Aligned_cols=207  Identities=23%  Similarity=0.202  Sum_probs=155.0

Q ss_pred             cccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcce
Q 036729          614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL  693 (970)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  693 (970)
                      +.++++++++++++|.++. +|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            4556666666666666663 343332  4667777777777666666677777777777777777654332  5677777


Q ss_pred             EEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCC
Q 036729          694 KLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKN  773 (970)
Q Consensus       694 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N  773 (970)
                      +|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..+..+..++.|+. |+|++|
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK-LSLANN  158 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE-EECTTS
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE-EECCCC
Confidence            7777777776 45666777777778888888777777777777888888888888888666666777888887 888888


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          774 NFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       774 ~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      .+++..+..|..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.|.+.
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            888666667788999999999999998 688888888999999999999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=9e-25  Score=240.34  Aligned_cols=235  Identities=15%  Similarity=0.143  Sum_probs=140.1

Q ss_pred             CCCCccceEecCCCCCEEEEECCCCCCccccccCccCC--CCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCC
Q 036729           52 HMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNL--TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGK  129 (970)
Q Consensus        52 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~  129 (970)
                      -|.+|.++.|+  ...++.++++++.+.   +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus        35 vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~  108 (336)
T 2ast_B           35 VCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS  108 (336)
T ss_dssp             SCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred             HHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence            35579999875  345778888887766   3344555  6778888888777766554 45677777777777777654


Q ss_pred             -CCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhcccc-cccc-CCCccccCCceeeEEEcCCC-cCCCC-Ccc
Q 036729          130 -IPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC-QLNG-SIPVEIGNLKHLTSLDLQMN-KLSGL-IPE  204 (970)
Q Consensus       130 -~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~-~~~~-~~p~~l~~l~~L~~L~Ls~n-~i~~~-~~~  204 (970)
                       +|..+..+++|++|++++|.+.+..|..++++++|++|++++| .+++ .++..+.++++|++|++++| .+++. .+.
T Consensus       109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence             6666677777777777777776666666666777777777776 4543 24445566666666666666 55543 344


Q ss_pred             cccCCc-cccccccccc--ccC-CCCcccccCCCCCcEEEccCCc-CccccCccccCCCCCCEEEccCcc-ccccCCccc
Q 036729          205 AIHGCE-ELQKFAASNN--MLE-GTIPSSIVLLKSLQILNLANNS-LSGSIPVELSHLFNLRYLNLLGNI-FDGEIPSEL  278 (970)
Q Consensus       205 ~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l  278 (970)
                      .+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence            455555 5555555555  233 2334444455555555555555 444444445555555555555553 111111234


Q ss_pred             cCCCCccEEECcCC
Q 036729          279 NKLAQLEELDLSKN  292 (970)
Q Consensus       279 ~~l~~L~~L~L~~n  292 (970)
                      +++++|++|++++|
T Consensus       269 ~~~~~L~~L~l~~~  282 (336)
T 2ast_B          269 GEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGCTTCCEEECTTS
T ss_pred             hcCCCCCEEeccCc
Confidence            44455555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=8.8e-22  Score=210.14  Aligned_cols=203  Identities=25%  Similarity=0.231  Sum_probs=135.6

Q ss_pred             ccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccce
Q 036729          591 AMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGE  670 (970)
Q Consensus       591 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  670 (970)
                      ..+++++.++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+++..+.  +.+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            34445555555555555 2343332  4566666666666666566666666666666666666643322  55666777


Q ss_pred             EEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccc
Q 036729          671 LDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFF  750 (970)
Q Consensus       671 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  750 (970)
                      |++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            777777766 4555666677777777777777766666677777777777777777766666677777777777777777


Q ss_pred             cccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036729          751 TGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG  801 (970)
Q Consensus       751 ~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~  801 (970)
                      ++..+..+..++.|+. |++++|.++ .+|..+..+.+|+.++|++|.+..
T Consensus       161 ~~l~~~~~~~l~~L~~-L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          161 TELPAGLLNGLENLDT-LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             SCCCTTTTTTCTTCCE-EECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CccCHHHhcCcCCCCE-EECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            7544455566777776 777777777 667777777888888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=6.3e-22  Score=207.15  Aligned_cols=192  Identities=25%  Similarity=0.274  Sum_probs=128.4

Q ss_pred             CCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCC
Q 036729           52 HMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIP  131 (970)
Q Consensus        52 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p  131 (970)
                      +||.|.|.+|..   ..+.++++++.++ .+|..+.  +.++.|+|++|.+.+..+..++++++|++|+|++|.+.+..|
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            588999999963   3446788888887 4454444  578889999888888777788888888888888888887777


Q ss_pred             cCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcc
Q 036729          132 PEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEE  211 (970)
Q Consensus       132 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~  211 (970)
                      ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++.          
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------  146 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI----------  146 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc----------
Confidence            7778888888888888877655555555555555555555555544443445555555555555555444          


Q ss_pred             cccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCcccccc
Q 036729          212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGE  273 (970)
Q Consensus       212 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~  273 (970)
                                    .+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+.+.
T Consensus       147 --------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          147 --------------PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             --------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             --------------CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                          444455555666666666666655555566666666666666666544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.2e-23  Score=233.27  Aligned_cols=253  Identities=22%  Similarity=0.269  Sum_probs=178.0

Q ss_pred             EECCCCCCCCCCCcccccCcCCCceeccCccccCCCC----cccccCC-CCcEEEccCCcCccCCcccCcCc-----Ccc
Q 036729          575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP----SEFGKLT-ELNFLDLSFNSFTGQIAPQLSKC-----AKL  644 (970)
Q Consensus       575 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~~-----~~L  644 (970)
                      +++++|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666666666666666667777777777776555    5666676 77778887777777666665554     778


Q ss_pred             cEEEccCCcccCCccccccc----c-CccceEEcccCcCcCCCCCCCC----C-CCcceEEEccCCcCcccCCc----cc
Q 036729          645 AHLLLSNNELTGTIPFWLGS----L-QEIGELDLSSNNFNGTVPAEIG----N-CSKLLKLSLRGNNLSGKIPP----EI  710 (970)
Q Consensus       645 ~~L~L~~n~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~~~----~l  710 (970)
                      ++|++++|.+++..+..+..    + ++|++|++++|++++..+..+.    . .++|++|++++|.+++..+.    .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            88888888777666654433    3 6788888888887765443332    2 35788888888887754333    33


Q ss_pred             cccc-ccceeccCCCccccccchhhhc----c-cCCcEEECcccccccc----Cchhhhhh-hhhHhhhhCCCCcccccC
Q 036729          711 GNLT-ALNVLNLQRNSLSGNIPSTIQQ----C-KKLYELRLSENFFTGS----IPADLGRL-TELQVILDLSKNNFSGEI  779 (970)
Q Consensus       711 ~~l~-~L~~L~L~~N~l~~~~p~~~~~----l-~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~~L~ls~N~l~g~i  779 (970)
                      ..++ +|++|++++|++++..+..+..    + ++|+.|||++|.+++.    ++..+... +.|+. |||++|.+++..
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~-L~Ls~N~l~~~~  241 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS-LNLCLNCLHGPS  241 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE-EECCSSCCCCCC
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE-EECcCCCCCcHH
Confidence            4444 7888888888887777654443    3 5888888888888763    45555553 47877 888888888654


Q ss_pred             C----ccccCCCCCCEEeCCCCcCccc-------cCcccCCCCcCcEEecCCCcccccCC
Q 036729          780 P----PSLGSLLKLERLNISYNQLQGQ-------VPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       780 p----~~~~~l~~L~~L~ls~N~l~~~-------~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +    ..+..+++|+.|++++|.+.+.       ++..+..+++|++||+++|++.+..|
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            4    3456788999999999985443       34567888999999999999988755

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=3e-22  Score=216.88  Aligned_cols=203  Identities=20%  Similarity=0.208  Sum_probs=164.0

Q ss_pred             CCCCcEEEccCCcCccCCcccC--cCcCcccEEEccCCcccCCcc----ccccccCccceEEcccCcCcCCCCCCCCCCC
Q 036729          617 LTELNFLDLSFNSFTGQIAPQL--SKCAKLAHLLLSNNELTGTIP----FWLGSLQEIGELDLSSNNFNGTVPAEIGNCS  690 (970)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~l--~~~~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  690 (970)
                      +++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..|..|+.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4568888888888887777777  778888888888888876544    3345688899999999999888888888999


Q ss_pred             cceEEEccCCcCccc---C-CcccccccccceeccCCCccccccc--h-hhhcccCCcEEECccccccccCchhhhhh--
Q 036729          691 KLLKLSLRGNNLSGK---I-PPEIGNLTALNVLNLQRNSLSGNIP--S-TIQQCKKLYELRLSENFFTGSIPADLGRL--  761 (970)
Q Consensus       691 ~L~~L~L~~N~l~~~---~-~~~l~~l~~L~~L~L~~N~l~~~~p--~-~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l--  761 (970)
                      +|++|++++|++.+.   . +..+..+++|++|++++|+++...+  . .+..+++|++|||++|++++.+|..++.+  
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            999999999987652   2 2334678899999999999864322  1 35788999999999999998888888877  


Q ss_pred             -hhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccc
Q 036729          762 -TELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQG  825 (970)
Q Consensus       762 -~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g  825 (970)
                       +.|+. |++++|.++ .+|..+.  ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       250 ~~~L~~-L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 SSALNS-LNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CTTCCC-EECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCcCCE-EECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence             58888 999999999 7787775  7999999999999974 33 5778999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=6.2e-24  Score=238.13  Aligned_cols=242  Identities=19%  Similarity=0.290  Sum_probs=168.4

Q ss_pred             CCcccccCcCCCceeccCccccCCCC----cccccCCCCcEEEccCC---cCccCCcccC-------cCcCcccEEEccC
Q 036729          586 IPSELAMSRNLSRLRLAHNHLTGNIP----SEFGKLTELNFLDLSFN---SFTGQIAPQL-------SKCAKLAHLLLSN  651 (970)
Q Consensus       586 ~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n---~l~~~~~~~l-------~~~~~L~~L~L~~  651 (970)
                      ++..+..+++|+.|++++|.++...+    ..+..+++|++|++++|   ++++.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            34445555666666666666554322    23456666777777664   3344444433       5667777777777


Q ss_pred             CcccC----CccccccccCccceEEcccCcCcCCCCCCC----CCC---------CcceEEEccCCcCc-ccCC---ccc
Q 036729          652 NELTG----TIPFWLGSLQEIGELDLSSNNFNGTVPAEI----GNC---------SKLLKLSLRGNNLS-GKIP---PEI  710 (970)
Q Consensus       652 n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l---------~~L~~L~L~~N~l~-~~~~---~~l  710 (970)
                      |.+++    .+|..+..+++|++|+|++|.+.+..+..+    ..+         ++|++|++++|+++ +.++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            77766    355566677777777777777754322222    223         77888888888776 3333   355


Q ss_pred             ccccccceeccCCCcccc-----ccchhhhcccCCcEEECcccccc----ccCchhhhhhhhhHhhhhCCCCccccc---
Q 036729          711 GNLTALNVLNLQRNSLSG-----NIPSTIQQCKKLYELRLSENFFT----GSIPADLGRLTELQVILDLSKNNFSGE---  778 (970)
Q Consensus       711 ~~l~~L~~L~L~~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~~L~ls~N~l~g~---  778 (970)
                      ..+++|++|++++|+++.     ..|..+..+++|+.|+|++|.++    +.+|..+..++.|+. |+|++|.+++.   
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~-L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE-LGLNDCLLSARGAA  262 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE-EECTTCCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE-EECCCCCCchhhHH
Confidence            667788888888888762     34446777888888888888886    667778888888887 88888888765   


Q ss_pred             -CCccc--cCCCCCCEEeCCCCcCcc----ccCccc-CCCCcCcEEecCCCcccccCC
Q 036729          779 -IPPSL--GSLLKLERLNISYNQLQG----QVPASL-GKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       779 -ip~~~--~~l~~L~~L~ls~N~l~~----~~p~~l-~~l~~L~~l~ls~N~l~g~~p  828 (970)
                       +|..+  +.+++|++|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             56666  448999999999999998    588887 668999999999999987664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=8.2e-22  Score=204.74  Aligned_cols=197  Identities=17%  Similarity=0.181  Sum_probs=143.4

Q ss_pred             CCcEEEccCCcCccCCcccCcCcCcccEEEccCCc-ccCCccccccccCccceEEccc-CcCcCCCCCCCCCCCcceEEE
Q 036729          619 ELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNE-LTGTIPFWLGSLQEIGELDLSS-NNFNGTVPAEIGNCSKLLKLS  696 (970)
Q Consensus       619 ~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~  696 (970)
                      +|++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67777777777776666667777777777777775 6655555677777777777777 777766666677777777777


Q ss_pred             ccCCcCcccCCcccccccccc---eeccCCC-ccccccchhhhcccCCc-EEECccccccccCchhhhhhhhhHhhhhCC
Q 036729          697 LRGNNLSGKIPPEIGNLTALN---VLNLQRN-SLSGNIPSTIQQCKKLY-ELRLSENFFTGSIPADLGRLTELQVILDLS  771 (970)
Q Consensus       697 L~~N~l~~~~~~~l~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls  771 (970)
                      +++|.+++ +|. +..+++|+   +|++++| ++++..+..|..+++|+ .|++++|+++ .+|......+.|+. |+++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~-L~L~  187 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA-VYLN  187 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE-EECT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE-EEcC
Confidence            77777775 444 66666666   7888888 77776666777888888 8888888887 55554444477777 8888


Q ss_pred             CCc-ccccCCccccCC-CCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCc
Q 036729          772 KNN-FSGEIPPSLGSL-LKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNH  822 (970)
Q Consensus       772 ~N~-l~g~ip~~~~~l-~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~  822 (970)
                      +|. +++..+..|+++ ++|+.||+++|++++. |..  .+++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            884 887777788888 8999999999998854 433  56678888887763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=3.5e-21  Score=201.50  Aligned_cols=160  Identities=26%  Similarity=0.292  Sum_probs=107.0

Q ss_pred             ccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECc
Q 036729          667 EIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS  746 (970)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  746 (970)
                      .++.|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            44555555555554444445555555555555555555555555555555555555555555555555566666666666


Q ss_pred             cccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729          747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ  826 (970)
Q Consensus       747 ~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~  826 (970)
                      +|++++..+..+..++.|+. |+|++|.+++..+..|+.+++|++|+|++|++++..|..+..+++|++|++++|+++|.
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKE-LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCcCCCcChhHhccCCcccE-EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66666555555566666666 77777777766666788888999999999999888888888899999999999999888


Q ss_pred             C
Q 036729          827 L  827 (970)
Q Consensus       827 ~  827 (970)
                      .
T Consensus       195 ~  195 (251)
T 3m19_A          195 R  195 (251)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=5.7e-23  Score=225.92  Aligned_cols=252  Identities=22%  Similarity=0.310  Sum_probs=189.0

Q ss_pred             ccEEECCCCCCCCCCCcccccC--cCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccC-CcccCcCcCcccEEE
Q 036729          572 LTALDLTNNSFSGPIPSELAMS--RNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQ-IAPQLSKCAKLAHLL  648 (970)
Q Consensus       572 L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~~~~L~~L~  648 (970)
                      ++.++++++.+.   +..+..+  +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            455666665554   3444555  6778888888887766554 45678888888888887765 666778888888888


Q ss_pred             ccCCcccCCccccccccCccceEEcccC-cCcCC-CCCCCCCCCcceEEEccCC-cCccc-CCccccccc-ccceeccCC
Q 036729          649 LSNNELTGTIPFWLGSLQEIGELDLSSN-NFNGT-VPAEIGNCSKLLKLSLRGN-NLSGK-IPPEIGNLT-ALNVLNLQR  723 (970)
Q Consensus       649 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~-~L~~L~L~~  723 (970)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            8888888777777888888888888888 56652 5555677888888888888 88754 456677888 899999998


Q ss_pred             C--ccc-cccchhhhcccCCcEEECcccc-ccccCchhhhhhhhhHhhhhCCCCc-ccccCCccccCCCCCCEEeCCCCc
Q 036729          724 N--SLS-GNIPSTIQQCKKLYELRLSENF-FTGSIPADLGRLTELQVILDLSKNN-FSGEIPPSLGSLLKLERLNISYNQ  798 (970)
Q Consensus       724 N--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~~L~ls~N~-l~g~ip~~~~~l~~L~~L~ls~N~  798 (970)
                      |  .++ +.+|..+..+++|+.|++++|. +++..+..+..++.|+. |++++|. ++......++++++|+.|++++| 
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~-L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH-LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE-EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE-eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            8  455 5567777888999999999998 77788888888999988 9999985 32222236788999999999999 


Q ss_pred             CccccCcccCCC-CcCcEEecCCCcccccCCcccc
Q 036729          799 LQGQVPASLGKL-TSLHVLNLSNNHLQGQLPLTFS  832 (970)
Q Consensus       799 l~~~~p~~l~~l-~~L~~l~ls~N~l~g~~p~~~~  832 (970)
                      ++.   ..+..+ ..+..|++++|++++..|..+.
T Consensus       283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence            332   233444 3477778999999999886543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1e-23  Score=236.39  Aligned_cols=248  Identities=19%  Similarity=0.260  Sum_probs=148.7

Q ss_pred             CCccccCCCCCcEEEccccccccccC-----CCCCCCcccEEECCCCCC---CCCCCcccccCcCCCceeccCccccCCC
Q 036729          539 LPPSLFQLKKLRIINFSHNKFSGSIY-----PLTGSNSLTALDLTNNSF---SGPIPSELAMSRNLSRLRLAHNHLTGNI  610 (970)
Q Consensus       539 ~~~~~~~l~~L~~L~ls~n~l~~~~~-----~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  610 (970)
                      ++..+..+++|+.|++++|.+....+     .+..+++|+.|++++|.+   ++.+|..+..                 +
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~-----------------l   86 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-----------------L   86 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH-----------------H
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH-----------------H
Confidence            44455666777777777777654321     244555666666655432   2233332200                 0


Q ss_pred             CcccccCCCCcEEEccCCcCcc----CCcccCcCcCcccEEEccCCcccCCcccccc----cc---------CccceEEc
Q 036729          611 PSEFGKLTELNFLDLSFNSFTG----QIAPQLSKCAKLAHLLLSNNELTGTIPFWLG----SL---------QEIGELDL  673 (970)
Q Consensus       611 p~~~~~l~~L~~L~Ls~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~----~l---------~~L~~L~L  673 (970)
                      ...+..+++|++|++++|.+++    .++..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++
T Consensus        87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence            0112455566666666666554    2444555566666666666665433322222    22         66666666


Q ss_pred             ccCcCc-CCCC---CCCCCCCcceEEEccCCcCc--c---cCCcccccccccceeccCCCccc----cccchhhhcccCC
Q 036729          674 SSNNFN-GTVP---AEIGNCSKLLKLSLRGNNLS--G---KIPPEIGNLTALNVLNLQRNSLS----GNIPSTIQQCKKL  740 (970)
Q Consensus       674 s~N~l~-~~~p---~~l~~l~~L~~L~L~~N~l~--~---~~~~~l~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L  740 (970)
                      ++|+++ +.+|   ..+..+++|++|++++|.++  |   ..|..+..+++|++|+|++|.++    +.+|..+..+++|
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  246 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence            666665 2233   23445666777777777665  2   23335666777777777777775    5566667777777


Q ss_pred             cEEECcccccccc----Cchhhhh--hhhhHhhhhCCCCcccc----cCCccc-cCCCCCCEEeCCCCcCccccC
Q 036729          741 YELRLSENFFTGS----IPADLGR--LTELQVILDLSKNNFSG----EIPPSL-GSLLKLERLNISYNQLQGQVP  804 (970)
Q Consensus       741 ~~L~Ls~N~l~~~----ip~~l~~--l~~L~~~L~ls~N~l~g----~ip~~~-~~l~~L~~L~ls~N~l~~~~p  804 (970)
                      +.|+|++|.+++.    +|..+..  ++.|+. |+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~-L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE-EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEE-EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            7777777777765    4555533  677776 7888888776    477766 668899999999999987764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=4.1e-23  Score=228.91  Aligned_cols=81  Identities=21%  Similarity=0.180  Sum_probs=38.2

Q ss_pred             EECCCCCCccccccCccCCCCCcEEECCCCCCCCCCC----ccccCCC-CCcEeecCCCcCcCCCCcCCCCC-----CCC
Q 036729           71 LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIP----SELGQLQ-NLRILLLYSNSFSGKIPPEIGFL-----NKL  140 (970)
Q Consensus        71 L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p----~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~l-----~~L  140 (970)
                      .+|+.+.++|.++..+...++|++|||++|.+++..+    ..+..++ +|++|+|++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3445555555554444444445555555555544333    3444444 45555555555544433333332     444


Q ss_pred             cEEEccCccCC
Q 036729          141 QVLRIGDNLLW  151 (970)
Q Consensus       141 ~~L~L~~n~~~  151 (970)
                      ++|++++|.+.
T Consensus        83 ~~L~Ls~n~l~   93 (362)
T 3goz_A           83 TSLNLSGNFLS   93 (362)
T ss_dssp             CEEECCSSCGG
T ss_pred             cEEECcCCcCC
Confidence            44444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=7.5e-22  Score=213.72  Aligned_cols=201  Identities=22%  Similarity=0.234  Sum_probs=131.6

Q ss_pred             CCCceeccCccccCCCCccc--ccCCCCcEEEccCCcCccCCc----ccCcCcCcccEEEccCCcccCCccccccccCcc
Q 036729          595 NLSRLRLAHNHLTGNIPSEF--GKLTELNFLDLSFNSFTGQIA----PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEI  668 (970)
Q Consensus       595 ~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  668 (970)
                      +|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+++..|..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            35555555555555555444  555555555555555554333    223345666666666666666666666666666


Q ss_pred             ceEEcccCcCcCC---C-CCCCCCCCcceEEEccCCcCcccCC--c-ccccccccceeccCCCccccccchhhhcc---c
Q 036729          669 GELDLSSNNFNGT---V-PAEIGNCSKLLKLSLRGNNLSGKIP--P-EIGNLTALNVLNLQRNSLSGNIPSTIQQC---K  738 (970)
Q Consensus       669 ~~L~Ls~N~l~~~---~-p~~l~~l~~L~~L~L~~N~l~~~~~--~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l---~  738 (970)
                      ++|++++|++.+.   . +..+..+++|++|++++|+++...+  . .+..+++|++|++++|++++..|..+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            6666666665541   1 2223567777777777777753211  1 24566788888888888887777666666   5


Q ss_pred             CCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036729          739 KLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG  801 (970)
Q Consensus       739 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~  801 (970)
                      +|+.|+|++|+++ .+|..+.  +.|+. |||++|.+++. |. +..+++|+.|++++|+++.
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~-L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGLP--AKLRV-LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCCC--SCCSC-EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCCEEECCCCCCC-chhhhhc--CCCCE-EECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8888888888888 6777664  67877 89999999864 33 6788999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.3e-21  Score=200.13  Aligned_cols=196  Identities=18%  Similarity=0.212  Sum_probs=129.0

Q ss_pred             CCCceeccCccccCCCCcccccCCCCcEEEccCCc-CccCCcccCcCcCcccEEEccC-CcccCCccccccccCccceEE
Q 036729          595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS-FTGQIAPQLSKCAKLAHLLLSN-NELTGTIPFWLGSLQEIGELD  672 (970)
Q Consensus       595 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  672 (970)
                      +++.|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665555566666666666666665 6655555666666777777766 666655556666667777777


Q ss_pred             cccCcCcCCCCCCCCCCCcce---EEEccCC-cCcccCCcccccccccc-eeccCCCccccccchhhhcccCCcEEECcc
Q 036729          673 LSSNNFNGTVPAEIGNCSKLL---KLSLRGN-NLSGKIPPEIGNLTALN-VLNLQRNSLSGNIPSTIQQCKKLYELRLSE  747 (970)
Q Consensus       673 Ls~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  747 (970)
                      +++|++++ +|. |..+++|+   +|++++| .+++..+..|..+++|+ +|++++|+++...+..+.. ++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            77777665 444 66666666   7777777 66666555667777777 7777777776433334444 6677777777


Q ss_pred             cc-ccccCchhhhhh-hhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC
Q 036729          748 NF-FTGSIPADLGRL-TELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN  797 (970)
Q Consensus       748 N~-l~~~ip~~l~~l-~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N  797 (970)
                      |+ +++..+..+..+ +.|+. |++++|.+++ +|..  .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~-L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSL-LDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSE-EECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcE-EECCCCcccc-CChh--HhccCceeeccCc
Confidence            74 775555666777 77776 7777777774 4433  5678888888776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=5.2e-21  Score=206.42  Aligned_cols=192  Identities=27%  Similarity=0.364  Sum_probs=87.2

Q ss_pred             CcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729          593 SRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD  672 (970)
Q Consensus       593 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  672 (970)
                      +++|+.|++++|.++. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|++++. + .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence            3444444444444432 22 34444555555555555443322  44445555555555554432 1 344444455555


Q ss_pred             cccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc
Q 036729          673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG  752 (970)
Q Consensus       673 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  752 (970)
                      +++|++++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|+++ 
T Consensus       114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-  186 (308)
T 1h6u_A          114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-  186 (308)
T ss_dssp             CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             CCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC-
Confidence            55554443211  4444444444444444443322  4444444444444444443222  444444444444444444 


Q ss_pred             cCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccc
Q 036729          753 SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQG  825 (970)
Q Consensus       753 ~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g  825 (970)
                                              +..+  +..+++|++|++++|++++..|  +..+++|+.|++++|++++
T Consensus       187 ------------------------~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 ------------------------DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             ------------------------CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             ------------------------cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence                                    3221  4445555555555555554332  4455555555555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=8.5e-21  Score=204.72  Aligned_cols=176  Identities=28%  Similarity=0.375  Sum_probs=110.9

Q ss_pred             cccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcce
Q 036729          614 FGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLL  693 (970)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  693 (970)
                      +..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++.+.            
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~------------  100 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV------------  100 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC------------
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc------------
Confidence            3455666666666666654 22 35555566666666665554433  55555555555555555432            


Q ss_pred             EEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCC
Q 036729          694 KLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKN  773 (970)
Q Consensus       694 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N  773 (970)
                                    ..+..+++|++|++++|++++..  .+..+++|+.|++++|.+++..+  +..++.|+. |++++|
T Consensus       101 --------------~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~-L~l~~n  161 (308)
T 1h6u_A          101 --------------SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY-LSIGNA  161 (308)
T ss_dssp             --------------GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE-EECCSS
T ss_pred             --------------hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccE-EEccCC
Confidence                          13444445555555555554432  15555556666666666654332  556666666 667777


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          774 NFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       774 ~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      .+++.. . +..+++|+.|++++|++++..|  +..+++|++|++++|++++..|
T Consensus       162 ~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          162 QVSDLT-P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             CCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             cCCCCh-h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence            766533 3 7889999999999999997655  8899999999999999998765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=5e-20  Score=186.68  Aligned_cols=192  Identities=21%  Similarity=0.228  Sum_probs=131.3

Q ss_pred             ceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCc
Q 036729          598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN  677 (970)
Q Consensus       598 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  677 (970)
                      .++.+++.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            3444444444 233322  2467777777777776666666777777777777777776666666777777777777777


Q ss_pred             CcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchh
Q 036729          678 FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD  757 (970)
Q Consensus       678 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~  757 (970)
                      +++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..   
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~---  164 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC---  164 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT---
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC---
Confidence            77666666777777888888888777666666777778888888888887776666777888888888888777543   


Q ss_pred             hhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccC
Q 036729          758 LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVP  804 (970)
Q Consensus       758 l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p  804 (970)
                          +.++. ++++.|.++|.+|..++.++.    ++..+...|..+
T Consensus       165 ----~~l~~-L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~  202 (208)
T 2o6s_A          165 ----PGIRY-LSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPV  202 (208)
T ss_dssp             ----TTTHH-HHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBG
T ss_pred             ----CCHHH-HHHHHHhCCceeeccCccccC----CccccccCCCcc
Confidence                35555 777888888888877776654    444444444333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.5e-20  Score=217.29  Aligned_cols=207  Identities=23%  Similarity=0.303  Sum_probs=139.6

Q ss_pred             CCCCCCCCC-----Cccce-EecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEe
Q 036729           46 NWSARAHMC-----SWHGV-TCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRIL  119 (970)
Q Consensus        46 ~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L  119 (970)
                      +|....++|     .|.|+ .|.  ..+++.|+|+++.+++ +|..+  +++|++|+|++|.++ .+|   ..+++|++|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L  105 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL  105 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred             HHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence            454445567     69999 786  3578999999999987 66655  378999999999888 566   557888899


Q ss_pred             ecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCC
Q 036729          120 LLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLS  199 (970)
Q Consensus       120 ~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~  199 (970)
                      +|++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|+++
T Consensus       106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence            999888886 776 554  88888888887765 554   45666666666666653 343   3455555555555555


Q ss_pred             CCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCC-------CEEEccCccccc
Q 036729          200 GLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNL-------RYLNLLGNIFDG  272 (970)
Q Consensus       200 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~~~~  272 (970)
                      +                         +|. +.  ++|+.|+|++|.++ .+|. +..  +|       +.|++++|.++ 
T Consensus       174 ~-------------------------lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          174 F-------------------------LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             C-------------------------CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred             C-------------------------cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence            4                         333 33  55666666666665 3444 333  45       77777777777 


Q ss_pred             cCCccccCCCCccEEECcCCcCccccccccCCCC
Q 036729          273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLK  306 (970)
Q Consensus       273 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  306 (970)
                      .+|..+..+++|++|++++|.+++.+|..+..++
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            3566666788888888888888777776655443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=7.4e-20  Score=185.44  Aligned_cols=185  Identities=24%  Similarity=0.230  Sum_probs=129.2

Q ss_pred             CCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCc
Q 036729           53 MCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPP  132 (970)
Q Consensus        53 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~  132 (970)
                      .|.|++|.|...            +++ .+|..+  .++|++|++++|.+++..+..++.+++|++|++++|.+.+..+.
T Consensus         6 ~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A            6 SCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             EEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             EECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence            378999999742            121 122222  34677777777777765555677777777777777777754445


Q ss_pred             CCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCccc
Q 036729          133 EIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEEL  212 (970)
Q Consensus       133 ~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  212 (970)
                      .+..+++|++|++++|.+.+..+..+.++++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            56777777777777777765555566777777777777777776656567777777788887777777766667777778


Q ss_pred             ccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCC
Q 036729          213 QKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFN  259 (970)
Q Consensus       213 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  259 (970)
                      ++|++++|.+.+       .+++|++|+++.|+++|.+|.+++.++.
T Consensus       151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            888777776543       3456777777778888777777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=9.7e-20  Score=210.45  Aligned_cols=188  Identities=24%  Similarity=0.370  Sum_probs=136.2

Q ss_pred             CCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcc
Q 036729          595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLS  674 (970)
Q Consensus       595 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  674 (970)
                      +++.|++++|.+++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            78888888888876 665553  67888888888888 455   346788888888888887 555 554  78888888


Q ss_pred             cCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccC
Q 036729          675 SNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSI  754 (970)
Q Consensus       675 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i  754 (970)
                      +|++++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|++++ +|. +.  ++|+.|+|++|+++ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            888886 554   57788888888888876 444   46778888888888876 454 54  77888888888887 56


Q ss_pred             chhhhhhhhh-------HhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCC
Q 036729          755 PADLGRLTEL-------QVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLT  811 (970)
Q Consensus       755 p~~l~~l~~L-------~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~  811 (970)
                      |. +..  .|       +. |+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus       196 p~-~~~--~L~~~~~~L~~-L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIF-FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC-CC----------CCEE-EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceE-EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            65 544  45       55 777777777 4677777777777777777777777777666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=6.7e-19  Score=193.83  Aligned_cols=238  Identities=21%  Similarity=0.215  Sum_probs=140.0

Q ss_pred             EECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCc-ccCcCcCcccE-EEccCC
Q 036729          575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIA-PQLSKCAKLAH-LLLSNN  652 (970)
Q Consensus       575 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~~~~L~~-L~L~~n  652 (970)
                      ++.++++++ .+|..+  .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.+++|
T Consensus        14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            344444444 234333  2456666666666665444556666777777777776655443 34566666554 445556


Q ss_pred             cccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccC-CcCcccCCccccccc-ccceeccCCCcccccc
Q 036729          653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRG-NNLSGKIPPEIGNLT-ALNVLNLQRNSLSGNI  730 (970)
Q Consensus       653 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~  730 (970)
                      +++...|..|..+++|++|++++|++.+..+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++...
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            66666666667777777777777777665555555566666666654 345544444555543 4666777777776444


Q ss_pred             chhhhcccCCcEEECcc-ccccccCc-hhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccC
Q 036729          731 PSTIQQCKKLYELRLSE-NFFTGSIP-ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLG  808 (970)
Q Consensus       731 p~~~~~l~~L~~L~Ls~-N~l~~~ip-~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~  808 (970)
                      +..| ...+|+.+++++ |.++ .+| ..|..++.|+. ||+++|.++...+..   +.+|+.|.+.++.--..+| .+.
T Consensus       171 ~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~-LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          171 NSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI-LDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             TTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSE-EECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred             hhhc-cccchhHHhhccCCccc-CCCHHHhccCcccch-hhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence            3333 345677777764 3444 444 34566777776 777777777433333   4455555555554444566 367


Q ss_pred             CCCcCcEEecCCCc
Q 036729          809 KLTSLHVLNLSNNH  822 (970)
Q Consensus       809 ~l~~L~~l~ls~N~  822 (970)
                      .+++|+.++++++.
T Consensus       244 ~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          244 KLVALMEASLTYPS  257 (350)
T ss_dssp             TCCSCCEEECSCHH
T ss_pred             hCcChhhCcCCCCc
Confidence            77888888887554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=7.8e-19  Score=193.33  Aligned_cols=240  Identities=17%  Similarity=0.129  Sum_probs=170.4

Q ss_pred             EEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC-cccccCCCCcE-EEccCC
Q 036729          551 IINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP-SEFGKLTELNF-LDLSFN  628 (970)
Q Consensus       551 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~n  628 (970)
                      .++.+++.++.....+  .+++++|++++|+++...+.+|..+++|++|+|++|++.+.+| ..|.+++++++ ++++.|
T Consensus        13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            4445555554322222  2456677777777766555667778888888888887765554 45777777665 556678


Q ss_pred             cCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEccc-CcCcCCCCCCCCCCC-cceEEEccCCcCcccC
Q 036729          629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSS-NNFNGTVPAEIGNCS-KLLKLSLRGNNLSGKI  706 (970)
Q Consensus       629 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~  706 (970)
                      +++...|..|..+++|++|++++|+++...+..+....++..+++.+ +++....+..|..+. .++.|++++|+++...
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            88887788888888888888888888877776677777788888865 456655556666664 6888999999988544


Q ss_pred             CcccccccccceeccCC-CccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccC
Q 036729          707 PPEIGNLTALNVLNLQR-NSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS  785 (970)
Q Consensus       707 ~~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~  785 (970)
                      +. ....++|+.+++++ |.++...++.|..+++|+.||+++|+++...+..+.+++.|+. +++  +.++ .+| .+.+
T Consensus       171 ~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~-l~~--~~l~-~lP-~l~~  244 (350)
T 4ay9_X          171 NS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA-RST--YNLK-KLP-TLEK  244 (350)
T ss_dssp             TT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC-TTC--TTCC-CCC-CTTT
T ss_pred             hh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh-ccC--CCcC-cCC-Cchh
Confidence            44 44556788888875 5666555567889999999999999998655556777777765 443  3344 566 4788


Q ss_pred             CCCCCEEeCCCCc
Q 036729          786 LLKLERLNISYNQ  798 (970)
Q Consensus       786 l~~L~~L~ls~N~  798 (970)
                      +++|+.++++++.
T Consensus       245 l~~L~~l~l~~~~  257 (350)
T 4ay9_X          245 LVALMEASLTYPS  257 (350)
T ss_dssp             CCSCCEEECSCHH
T ss_pred             CcChhhCcCCCCc
Confidence            9999999998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=8.7e-19  Score=178.68  Aligned_cols=155  Identities=21%  Similarity=0.235  Sum_probs=113.5

Q ss_pred             eEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC-cccccccccceeccCCCccccccchhhhcccCCcEEECccc
Q 036729          670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN  748 (970)
Q Consensus       670 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  748 (970)
                      .+++++|.++. +|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|+.|+|++|
T Consensus        15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            44555555442 333221  234556666666655533 33566666666666666666666666777777777777777


Q ss_pred             cccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          749 FFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       749 ~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      ++++..|..+..++.|+. |+|++|.+++..|..|..+++|++|+|++|++++..|..+..+++|++|++++|+++|.++
T Consensus        92 ~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKT-LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCE-EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ccCccCHhHhcCCcCCCE-EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            777666666777777777 7888888888888889999999999999999999999999999999999999999999998

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=2e-18  Score=175.95  Aligned_cols=138  Identities=21%  Similarity=0.238  Sum_probs=98.7

Q ss_pred             CcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhh
Q 036729          690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILD  769 (970)
Q Consensus       690 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~  769 (970)
                      ++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..++.|+. |+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~-L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL-LL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE-EE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE-EE
Confidence            34555555555555544445555555666666666665555566666666666666666666444444566666666 77


Q ss_pred             CCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       770 ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      |++|.+++..|..|..+++|+.|+|++|++++..|..+..+++|++|++++|++.|.++
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            77777777777888889999999999999998888889999999999999999999887

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=1.3e-18  Score=192.30  Aligned_cols=180  Identities=28%  Similarity=0.244  Sum_probs=106.4

Q ss_pred             cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCcccccc-ccCccceEEcccCcCcCCCCCCCCCCCcceEEEccC
Q 036729          621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLG-SLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRG  699 (970)
Q Consensus       621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  699 (970)
                      +.++++++.++. +|..+.  ..++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456666666653 343332  2355566666665555555554 555555555555555555555555555555555555


Q ss_pred             CcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC
Q 036729          700 NNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI  779 (970)
Q Consensus       700 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i  779 (970)
                      |++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+                         |++|.+++..
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~-------------------------L~~N~l~~l~  152 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY-------------------------LSQNQISRFP  152 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-------------------------CCSSCCCSCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE-------------------------CCCCcCCeeC
Confidence            555544444455555555555555555544444454555555554                         4555544332


Q ss_pred             Cccc---cCCCCCCEEeCCCCcCccccCcccCCCCc--CcEEecCCCcccccCC
Q 036729          780 PPSL---GSLLKLERLNISYNQLQGQVPASLGKLTS--LHVLNLSNNHLQGQLP  828 (970)
Q Consensus       780 p~~~---~~l~~L~~L~ls~N~l~~~~p~~l~~l~~--L~~l~ls~N~l~g~~p  828 (970)
                      +..|   ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.|.+.
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            2333   56888999999999998766677777776  4889999999999876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=7.5e-18  Score=173.01  Aligned_cols=163  Identities=27%  Similarity=0.296  Sum_probs=121.0

Q ss_pred             CCCCCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCc
Q 036729           46 NWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS  125 (970)
Q Consensus        46 ~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~  125 (970)
                      .|......|.|++|.|..            +.++ .+|..+.  ++|++|+|++|.+++..|..+..+++|++|+|++|.
T Consensus        11 ~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence            355566789999999973            2222 3444332  789999999999998888889999999999999999


Q ss_pred             CcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCccc
Q 036729          126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEA  205 (970)
Q Consensus       126 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~  205 (970)
                      +....+..+..+++|++|+|++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus        76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred             CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence            87544556788899999999998887666666777788888888887776 66777777777777777777777666555


Q ss_pred             ccCCcccccccccccccCC
Q 036729          206 IHGCEELQKFAASNNMLEG  224 (970)
Q Consensus       206 l~~l~~L~~L~l~~n~l~~  224 (970)
                      |..+++|+.|++++|.+..
T Consensus       155 ~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTCTTCCEEECTTSCBCT
T ss_pred             HhCCCCCCEEEeeCCCccC
Confidence            6666666666666665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=7.2e-18  Score=173.16  Aligned_cols=137  Identities=25%  Similarity=0.264  Sum_probs=89.1

Q ss_pred             CcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhh
Q 036729          690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILD  769 (970)
Q Consensus       690 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~  769 (970)
                      ++|++|++++|.+++..|..+..+++|++|+|++|+++...+..|..+++|+.|+|++|++++..+..+..++.|+. |+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~-L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE-LF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe-Ee
Confidence            44444444444444444444444555555555555554444444455555555555555555444444555555555 66


Q ss_pred             CCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       770 ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      |++|.++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            6666666 567777888889999999999988777788889999999999999998886

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=4.3e-18  Score=199.18  Aligned_cols=189  Identities=22%  Similarity=0.293  Sum_probs=106.4

Q ss_pred             ccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccC
Q 036729          572 LTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN  651 (970)
Q Consensus       572 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~  651 (970)
                      +..+.+..+.+.+..+  +..++.|+.|++++|.+... | .+..+++|+.|+|++|.+++..+  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3344445554443322  34555666666666666532 2 45666666666666666665433  55666666666666


Q ss_pred             CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccc
Q 036729          652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP  731 (970)
Q Consensus       652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  731 (970)
                      |.+++. | .+..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..|
T Consensus        97 N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           97 NKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            666542 2 455566666666666666542  2355566666666666666543  445555666666666666655544


Q ss_pred             hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccc
Q 036729          732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG  777 (970)
Q Consensus       732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g  777 (970)
                        +..+++|+.|+|++|++++.  ..+..++.|+. |+|++|.+++
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~-L~L~~N~l~~  211 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV-LELFSQECLN  211 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE-EECCSEEEEC
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCE-EEccCCcCcC
Confidence              55566666666666665542  23555555555 5555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=6.2e-18  Score=180.52  Aligned_cols=188  Identities=27%  Similarity=0.354  Sum_probs=107.3

Q ss_pred             CceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccC
Q 036729          597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN  676 (970)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  676 (970)
                      ..+.+..+.+++..  .+..+++|++|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            34445555444322  234566666777776666543 2 35556666666666666665433  555666666666666


Q ss_pred             cCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCch
Q 036729          677 NFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA  756 (970)
Q Consensus       677 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  756 (970)
                      ++++. | .+..+++|++|++++|.+++.  ..                        +..+++|+.|++++|++++.  .
T Consensus       101 ~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~------------------------l~~l~~L~~L~l~~n~l~~~--~  150 (291)
T 1h6t_A          101 KVKDL-S-SLKDLKKLKSLSLEHNGISDI--NG------------------------LVHLPQLESLYLGNNKITDI--T  150 (291)
T ss_dssp             CCCCG-G-GGTTCTTCCEEECTTSCCCCC--GG------------------------GGGCTTCCEEECCSSCCCCC--G
T ss_pred             cCCCC-h-hhccCCCCCEEECCCCcCCCC--hh------------------------hcCCCCCCEEEccCCcCCcc--h
Confidence            65542 1 245555555555555555432  23                        44445555555555555432  3


Q ss_pred             hhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccc
Q 036729          757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQG  825 (970)
Q Consensus       757 ~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g  825 (970)
                      .+..++.|+. |++++|.+++..|  ++.+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus       151 ~l~~l~~L~~-L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          151 VLSRLTKLDT-LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGGGCTTCSE-EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             hhccCCCCCE-EEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            4555555555 5566666554433  66777777777777777653 3 37777777777877777765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.4e-17  Score=169.63  Aligned_cols=154  Identities=21%  Similarity=0.230  Sum_probs=116.8

Q ss_pred             CceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccC
Q 036729          597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN  676 (970)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  676 (970)
                      +.++++++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34555555555 3444433  56777777777777766667777777888888888877777777788888888888888


Q ss_pred             cCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccccccc
Q 036729          677 NFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGS  753 (970)
Q Consensus       677 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  753 (970)
                      ++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            88866666677788888888888888877777888888888888888888887777788888888888888888753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=3.6e-18  Score=182.39  Aligned_cols=189  Identities=21%  Similarity=0.285  Sum_probs=147.4

Q ss_pred             ccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccC
Q 036729          572 LTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN  651 (970)
Q Consensus       572 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~  651 (970)
                      +..+.+..+.+++..  .+..+++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            344456666655432  345788999999999999854 3 58899999999999999997655  89999999999999


Q ss_pred             CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccc
Q 036729          652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIP  731 (970)
Q Consensus       652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  731 (970)
                      |.+++. | .+..+++|++|++++|++++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..+
T Consensus       100 n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          100 NKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             SCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCCC-h-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            999873 3 489999999999999999975  4688899999999999999865  567777888888888888776654


Q ss_pred             hhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036729          732 STIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQG  801 (970)
Q Consensus       732 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~  801 (970)
                        +..+++|+.|++++|.+++                          +| .+..+++|+.|++++|+++.
T Consensus       174 --l~~l~~L~~L~L~~N~i~~--------------------------l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 --LAGLTKLQNLYLSKNHISD--------------------------LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             --GTTCTTCCEEECCSSCCCB--------------------------CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             --hcCCCccCEEECCCCcCCC--------------------------Ch-hhccCCCCCEEECcCCcccC
Confidence              6677777777777776653                          12 25566677777777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=169.93  Aligned_cols=136  Identities=23%  Similarity=0.213  Sum_probs=83.7

Q ss_pred             CcEEEccCCcCccCCc-ccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEcc
Q 036729          620 LNFLDLSFNSFTGQIA-PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLR  698 (970)
Q Consensus       620 L~~L~Ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  698 (970)
                      +++|++++|.+++..+ ..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            4555555555555433 234555556666666666555555555666666666666666665555556666666666666


Q ss_pred             CCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCc
Q 036729          699 GNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP  755 (970)
Q Consensus       699 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip  755 (970)
                      +|++++..|..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            666666666666666666666666666666666666667777777777777765443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=8.2e-18  Score=196.81  Aligned_cols=236  Identities=23%  Similarity=0.234  Sum_probs=174.7

Q ss_pred             cEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCc
Q 036729          550 RIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS  629 (970)
Q Consensus       550 ~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  629 (970)
                      ..+.+..+.+... ..+..++.|+.|++++|.+... + .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.
T Consensus        24 ~~l~l~~~~i~~~-~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~   98 (605)
T 1m9s_A           24 IKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK   98 (605)
T ss_dssp             HHHHTTCSCTTSE-ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             HHHhccCCCcccc-cchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence            3344555555432 2345667889999999998754 2 58889999999999999987554  8899999999999999


Q ss_pred             CccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcc
Q 036729          630 FTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPE  709 (970)
Q Consensus       630 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  709 (970)
                      +++.  +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++..|  
T Consensus        99 l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--  170 (605)
T 1m9s_A           99 IKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  170 (605)
T ss_dssp             CCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence            9863  3688899999999999999874  4588899999999999999876  568889999999999999987766  


Q ss_pred             cccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCC
Q 036729          710 IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKL  789 (970)
Q Consensus       710 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L  789 (970)
                      +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++.....+..+..+...-++            .+.....
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l------------~g~~~~~  236 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT------------DGSLVTP  236 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCS------------SSCBCCC
T ss_pred             hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEeccccccc------------CCCCcCc
Confidence            88899999999999999875  358889999999999999986544333333322210011            1222334


Q ss_pred             CEEeCCCCcCccccCcccCCCCc
Q 036729          790 ERLNISYNQLQGQVPASLGKLTS  812 (970)
Q Consensus       790 ~~L~ls~N~l~~~~p~~l~~l~~  812 (970)
                      +.+...++...|.+|..+..+..
T Consensus       237 ~~i~~~g~~~~~~i~~~l~~~~~  259 (605)
T 1m9s_A          237 EIISDDGDYEKPNVKWHLPEFTN  259 (605)
T ss_dssp             SEESTTCEEETTEEECCCSSCCS
T ss_pred             hhcccCCcccCCcceeccccccc
Confidence            45555556666666666655543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.5e-17  Score=183.89  Aligned_cols=176  Identities=25%  Similarity=0.226  Sum_probs=90.3

Q ss_pred             cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccc-cCCCCcEEEccCCcCccCCcccCcCcCcccEEEccC
Q 036729          573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFG-KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN  651 (970)
Q Consensus       573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~  651 (970)
                      +.++++++.++. +|..+.  ..++.|++++|++++..+..|. .+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456666666553 333222  2355555555555555444454 555555555555555555555555555555555555


Q ss_pred             CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccc---ccccccceeccCCCcccc
Q 036729          652 NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI---GNLTALNVLNLQRNSLSG  728 (970)
Q Consensus       652 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~~  728 (970)
                      |++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..+   ..+++|+.|+|++|++++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            55554444455555555555555555555555555555555555555555554332223   334555555555555554


Q ss_pred             ccchhhhcccC--CcEEECcccccc
Q 036729          729 NIPSTIQQCKK--LYELRLSENFFT  751 (970)
Q Consensus       729 ~~p~~~~~l~~--L~~L~Ls~N~l~  751 (970)
                      ..+..+..++.  ++.|+|++|++.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            44444444443  244555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=3e-18  Score=205.99  Aligned_cols=192  Identities=22%  Similarity=0.180  Sum_probs=116.0

Q ss_pred             EccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCc
Q 036729          624 DLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLS  703 (970)
Q Consensus       624 ~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  703 (970)
                      +++.|.+. ..+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.|+
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            34444444 45666777888888888888877 55666667888888888888888 67777888888888888888888


Q ss_pred             ccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccc
Q 036729          704 GKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSL  783 (970)
Q Consensus       704 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~  783 (970)
                       .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+......++|++|.++|.+|.. 
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-  360 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-  360 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence             66888888888888888888886 667778888889999999999988888888776444334789999999888864 


Q ss_pred             cCCCCCCEEeCCCC--------cCccccCcccCCCCcCcEEecCCCccccc
Q 036729          784 GSLLKLERLNISYN--------QLQGQVPASLGKLTSLHVLNLSNNHLQGQ  826 (970)
Q Consensus       784 ~~l~~L~~L~ls~N--------~l~~~~p~~l~~l~~L~~l~ls~N~l~g~  826 (970)
                           |+.|++++|        .+.+..+..+..+..+....+++|-+.+.
T Consensus       361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~  406 (727)
T 4b8c_D          361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH  406 (727)
T ss_dssp             ----------------------------------------------CCCGG
T ss_pred             -----cceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence                 455666666        45555555666777788888888887643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=3.4e-19  Score=214.27  Aligned_cols=218  Identities=21%  Similarity=0.188  Sum_probs=100.5

Q ss_pred             ChHHHHHHHHHHhhCCC-CCCCCCCCC-CCCCCCCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCC
Q 036729           23 ISTDSFWLLRIKQELVD-PTGILENWS-ARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSN  100 (970)
Q Consensus        23 ~~~~~~~l~~~~~~~~~-~~~~~~~w~-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n  100 (970)
                      ...++++|+++...... ....-..|. ..+..+.|.++.++  .++++.|+|.++.+... +..+     |+.++|+.|
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~  201 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQAL-----LQHKKLSQY  201 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hhhH-----hhcCccCcc
Confidence            35677889998776533 112233563 34556789998886  47899999998888763 3322     344444444


Q ss_pred             CCCC---------CCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccc
Q 036729          101 SLTG---------LIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAY  171 (970)
Q Consensus       101 ~~~~---------~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~  171 (970)
                      .+.+         ..|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++
T Consensus       202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  279 (727)
T 4b8c_D          202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH  279 (727)
T ss_dssp             --------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred             cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence            4332         33556667777777777777776 66666666777777777777666 6666667777777777777


Q ss_pred             cccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCC-CcEEEccCCcCcccc
Q 036729          172 CQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKS-LQILNLANNSLSGSI  250 (970)
Q Consensus       172 ~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~  250 (970)
                      |.++ .+|..++++++|++|+|++|.++ .+|..|.++++|++|++++|.+++.+|..+..+.. +..|+|++|.+++.+
T Consensus       280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~  357 (727)
T 4b8c_D          280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL  357 (727)
T ss_dssp             SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence            7766 55666677777777777777665 33555666666666666666666666655543321 223556666666555


Q ss_pred             Cc
Q 036729          251 PV  252 (970)
Q Consensus       251 ~~  252 (970)
                      |.
T Consensus       358 p~  359 (727)
T 4b8c_D          358 PH  359 (727)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=5.5e-20  Score=214.02  Aligned_cols=181  Identities=18%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             cCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCcc-------------CCccCCccccCCcccchhh-cccccccc
Q 036729          111 GQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNL-------------LWGEIPPHIGNLTELRELA-IAYCQLNG  176 (970)
Q Consensus       111 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~-------------~~~~~p~~l~~l~~L~~L~-L~~~~~~~  176 (970)
                      ..+++|+.|+|++|.+. .+|.+++.+++|+.|++++|.             ..+..|..++++++|++|+ ++.+.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            34555555555555554 455555555555555554443             4455666677777777776 45443220


Q ss_pred             CCCc------cccC--CceeeEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 036729          177 SIPV------EIGN--LKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSG  248 (970)
Q Consensus       177 ~~p~------~l~~--l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  248 (970)
                       ++.      .+..  ...|++|++++|++++. |. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence             000      0000  01356666666666653 33 555555666666555555 455555555555555555555554


Q ss_pred             ccCccccCCCCCCEEEccCccccccC-CccccCCCCccEEECcCCcCcccc
Q 036729          249 SIPVELSHLFNLRYLNLLGNIFDGEI-PSELNKLAQLEELDLSKNNLSGSI  298 (970)
Q Consensus       249 ~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~  298 (970)
                       +| .++.+++|++|++++|.+++.. |..++.+++|++|++++|.+++.+
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence             33 4555555555555555555544 555555555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=4.5e-20  Score=214.78  Aligned_cols=203  Identities=21%  Similarity=0.170  Sum_probs=105.3

Q ss_pred             ccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCc-------------CccCCcccCcCcCcccEEE-ccCCcccC
Q 036729          591 AMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNS-------------FTGQIAPQLSKCAKLAHLL-LSNNELTG  656 (970)
Q Consensus       591 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~l~~~~~L~~L~-L~~n~l~~  656 (970)
                      ..++.|+.|++++|+++ .+|..++.+++|+.|++++|.             ..+.+|..+..+++|+.|+ ++.|.+  
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence            34566777777777775 567777777777777776553             2233333334444444443 232221  


Q ss_pred             CccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhc
Q 036729          657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQ  736 (970)
Q Consensus       657 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~  736 (970)
                               ..|+.+.+++|.+....+      ..|+.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..+..
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~  484 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA  484 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred             ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence                     122223333333332211      135555565555554 333 555555555555555555 44555555


Q ss_pred             ccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC-CccccCCCCCCEEeCCCCcCccccCcc---cCCCCc
Q 036729          737 CKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI-PPSLGSLLKLERLNISYNQLQGQVPAS---LGKLTS  812 (970)
Q Consensus       737 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i-p~~~~~l~~L~~L~ls~N~l~~~~p~~---l~~l~~  812 (970)
                      +++|+.|+|++|++++ +| .++.++.|+. |+|++|.+++.+ |..++.+++|+.|+|++|++++..|..   +..+++
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~-L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~  561 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS  561 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCE-EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcE-EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence            5555555555555554 44 5555555555 555555555554 555555555555555555555544321   122455


Q ss_pred             CcEEe
Q 036729          813 LHVLN  817 (970)
Q Consensus       813 L~~l~  817 (970)
                      |++||
T Consensus       562 L~~L~  566 (567)
T 1dce_A          562 VSSIL  566 (567)
T ss_dssp             CSEEE
T ss_pred             cCccC
Confidence            55554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=5.2e-17  Score=162.61  Aligned_cols=155  Identities=21%  Similarity=0.320  Sum_probs=87.6

Q ss_pred             cCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccce
Q 036729          639 SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNV  718 (970)
Q Consensus       639 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~  718 (970)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+..  +..+..+++|++|++++|.+++..|..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44566666666666666 333 45666666666666664432  224555666666666666665555555555555666


Q ss_pred             eccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCc
Q 036729          719 LNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ  798 (970)
Q Consensus       719 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~  798 (970)
                      |++++|++++..|..+..+++|+.|++++|+                         +.+.+| .++.+++|+.|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-------------------------~i~~~~-~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG-------------------------AITDIM-PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCT-------------------------BCCCCG-GGGGCSSCCEEECTTBC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCC-------------------------CccccH-hhcCCCCCCEEECCCCC
Confidence            6655555555555555555555555555554                         222333 45566666666666666


Q ss_pred             CccccCcccCCCCcCcEEecCCCcccc
Q 036729          799 LQGQVPASLGKLTSLHVLNLSNNHLQG  825 (970)
Q Consensus       799 l~~~~p~~l~~l~~L~~l~ls~N~l~g  825 (970)
                      +++ +| .+..+++|++|++++|++.+
T Consensus       171 i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          171 VHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            665 22 56666667777777766543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=4.7e-17  Score=161.97  Aligned_cols=113  Identities=27%  Similarity=0.301  Sum_probs=77.4

Q ss_pred             ccceeccCCCccccccch-hhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEe
Q 036729          715 ALNVLNLQRNSLSGNIPS-TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN  793 (970)
Q Consensus       715 ~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~  793 (970)
                      ++++|++++|++++..+. .|..+++|+.|+|++|++++..|..+..++.|+. |+|++|.+++..|..|+++++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE-LQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE-EECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE-EECCCCcCCccCHHHhcCCCCCCEEE
Confidence            445555555555444432 3555555666666666666555666666666665 66666666666667777788888888


Q ss_pred             CCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       794 ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      |++|++++.+|..+..+++|++|++++|+++|.++
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88888888888888888888888888888888877

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=7.4e-17  Score=160.54  Aligned_cols=175  Identities=22%  Similarity=0.284  Sum_probs=114.2

Q ss_pred             ceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCc-ccccccccceeccCCCccccccchhhhcccCCcEEECcc
Q 036729          669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPP-EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSE  747 (970)
Q Consensus       669 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  747 (970)
                      +.+++++|.+. .+|..+.  .++++|++++|.+++..+. .+..+++|++|++++|++++..|..|..+++|+.|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            34555555553 3343332  2566666666666655543 366666777777777777766666777777777777777


Q ss_pred             ccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccC
Q 036729          748 NFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQL  827 (970)
Q Consensus       748 N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~  827 (970)
                      |++++..|..+..++.|+. |+|++|.+++.+|..++.+++|++|++++|.+++..+-.. -...++...+..+...|..
T Consensus        88 N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~  165 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKT-LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCE-EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCS
T ss_pred             CcCCccCHHHhcCCCCCCE-EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCC
Confidence            7777766666777777777 7788888888888888888888899999998887655211 0112333355566777777


Q ss_pred             CccccCCCCcccCCCCCCCCC
Q 036729          828 PLTFSGFPLSSFLGNAKLCGP  848 (970)
Q Consensus       828 p~~~~~~~~~~~~~n~~lc~~  848 (970)
                      |..+.+.....+..+...|..
T Consensus       166 P~~l~~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          166 PSKVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             STTTTTSBGGGSCTTTCCCCC
T ss_pred             ChHHcCCChhhCcHhhcCcCC
Confidence            877766665555556555653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.1e-16  Score=160.31  Aligned_cols=135  Identities=14%  Similarity=0.206  Sum_probs=117.9

Q ss_pred             ccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcc
Q 036729          613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL  692 (970)
Q Consensus       613 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  692 (970)
                      ....+++|++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..+..++.+++|
T Consensus        39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            4477889999999999999 455 68999999999999997754  3478899999999999999998888899999999


Q ss_pred             eEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc
Q 036729          693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG  752 (970)
Q Consensus       693 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  752 (970)
                      ++|++++|.+++..|..+..+++|++|++++|++.+.+| .+..+++|+.|++++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence            999999999998888899999999999999998444555 68888888888888887763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=4.6e-17  Score=170.81  Aligned_cols=170  Identities=23%  Similarity=0.309  Sum_probs=97.1

Q ss_pred             CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEE
Q 036729          617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS  696 (970)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  696 (970)
                      +.++..+++++|.+++..  .+..+++|++|++++|.++.. | .+..+++|++|++++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            444555566666665432  355566666666666665532 3 45555666666666666654433  55555555566


Q ss_pred             ccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCccc
Q 036729          697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS  776 (970)
Q Consensus       697 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~  776 (970)
                      +++|++++. |. +.. ++|++|++++|++++.                         | .+..++.|+. |++++|.++
T Consensus        92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-------------------------~-~l~~l~~L~~-L~Ls~N~i~  141 (263)
T 1xeu_A           92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-------------------------D-SLIHLKNLEI-LSIRNNKLK  141 (263)
T ss_dssp             CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-------------------------G-GGTTCTTCCE-EECTTSCCC
T ss_pred             CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-------------------------h-hhcCcccccE-EECCCCcCC
Confidence            555555542 11 111 4444455554444432                         2 3444555554 555555555


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCccccc
Q 036729          777 GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ  826 (970)
Q Consensus       777 g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~  826 (970)
                      +. | .++.+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       142 ~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          142 SI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            43 2 466677777777777777766  5677777777788887777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=4.2e-17  Score=171.15  Aligned_cols=151  Identities=22%  Similarity=0.269  Sum_probs=81.5

Q ss_pred             cccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccc
Q 036729          590 LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG  669 (970)
Q Consensus       590 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  669 (970)
                      +..+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +.. ++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCC
T ss_pred             hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Cccc
Confidence            4445555555555555542 23 45555555566665555554333  5555556666666655554322  112 5566


Q ss_pred             eEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccc
Q 036729          670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENF  749 (970)
Q Consensus       670 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  749 (970)
                      +|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|+
T Consensus       110 ~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          110 RLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred             EEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence            666666655543 2 355556666666666665543  2455556666666666666554  445556666666666666


Q ss_pred             cccc
Q 036729          750 FTGS  753 (970)
Q Consensus       750 l~~~  753 (970)
                      +++.
T Consensus       184 ~~~~  187 (263)
T 1xeu_A          184 CVNE  187 (263)
T ss_dssp             EECC
T ss_pred             ccCC
Confidence            5543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=7.9e-17  Score=175.68  Aligned_cols=219  Identities=14%  Similarity=0.095  Sum_probs=107.6

Q ss_pred             CCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCc----CccccccccCCCCCc
Q 036729          233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN----LSGSISLLNTQLKNL  308 (970)
Q Consensus       233 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L  308 (970)
                      +++|+.|+|.. .++...+.+|.++++|+.++++.|.+....+.+|..+.++..+....+.    ........|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            66666666666 5554555556666666666666666665566666666666665554421    122223344455555


Q ss_pred             c-EEEccCCcccCCCchhhhc---CCCCCcEEEccCCcCCCCCccccccCCCCCEEeCCCCcCCCCCCcccccccccccc
Q 036729          309 E-TLVLSDNAFTGSIPIKFCL---NNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDL  384 (970)
Q Consensus       309 ~-~L~L~~n~l~~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  384 (970)
                      + .+.+...   +.++..++.   ...+++.+.+.++-...........|++|+.+++++|+++...+.+|..+.+|+.+
T Consensus       179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence            5 4444322   123332221   13344444444331110111111135666666666666554444455555555555


Q ss_pred             cCCcccccCCCCcCCCCcCCCC-eeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEecccccc
Q 036729          385 LLNNNSFTGSFPPEIGNLSKLE-NLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHF  463 (970)
Q Consensus       385 ~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  463 (970)
                      ++.+| ++...+.+|.+|++|+ .+++.+                         .++..-+..|.+|++|+.+++++|.+
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-------------------------~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-------------------------SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-------------------------TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-------------------------cceEEchhhhhCCccCCEEEeCCCcc
Confidence            55544 3323333444444444 444444                         33333344555555666666555555


Q ss_pred             CCcccccccCCCCccEEe
Q 036729          464 SGSIPETMGKLKNLVILQ  481 (970)
Q Consensus       464 ~~~~~~~~~~l~~L~~L~  481 (970)
                      +...+..|.++++|+.++
T Consensus       310 ~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          310 TTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEECTTTTCTTCCCCEEE
T ss_pred             CccchhhhcCCcchhhhc
Confidence            555555566666665554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=4.7e-16  Score=169.50  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=76.0

Q ss_pred             CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccc-eEEcccCcCcCCCCCCCCCCCcceEE
Q 036729          617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG-ELDLSSNNFNGTVPAEIGNCSKLLKL  695 (970)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L  695 (970)
                      +++|+++++++|+++.+.+.+|.+|++|+.+++.+| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            677777777777777666667777777777777776 6655566777777777 777777 6666666778888888888


Q ss_pred             EccCCcCcccCCcccccccccceec
Q 036729          696 SLRGNNLSGKIPPEIGNLTALNVLN  720 (970)
Q Consensus       696 ~L~~N~l~~~~~~~l~~l~~L~~L~  720 (970)
                      ++++|+++...+..|.++++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            8888877777667777777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=3.5e-15  Score=145.09  Aligned_cols=132  Identities=22%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             CCCcEEEccCCcCc-cCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEE
Q 036729          618 TELNFLDLSFNSFT-GQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS  696 (970)
Q Consensus       618 ~~L~~L~Ls~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  696 (970)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555554 44444455555555555555555443  3444555555555555555544444444455555555


Q ss_pred             ccCCcCcccC-CcccccccccceeccCCCccccccc---hhhhcccCCcEEECcccccc
Q 036729          697 LRGNNLSGKI-PPEIGNLTALNVLNLQRNSLSGNIP---STIQQCKKLYELRLSENFFT  751 (970)
Q Consensus       697 L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~  751 (970)
                      +++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555554431 1345555555555555555554443   34555555666666555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=6.8e-15  Score=146.18  Aligned_cols=112  Identities=22%  Similarity=0.270  Sum_probs=86.5

Q ss_pred             ccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeC
Q 036729          715 ALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNI  794 (970)
Q Consensus       715 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~l  794 (970)
                      +|++|++++|+++ .+|..|..+++|+.|+|++|.+++..|..|..++.|+. |+|++|.+++..|..|.++++|+.|+|
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~-L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT-LILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE-EECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            4556666666655 34456666666666666666666666666667777776 777777777777778899999999999


Q ss_pred             CCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          795 SYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       795 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      ++|++++..+..|..+++|+.|++++|++.|.++
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            9999998777789999999999999999999887

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=3.8e-15  Score=141.63  Aligned_cols=85  Identities=26%  Similarity=0.348  Sum_probs=46.3

Q ss_pred             CccceEEcccCcCc-CCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEE
Q 036729          666 QEIGELDLSSNNFN-GTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELR  744 (970)
Q Consensus       666 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  744 (970)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555555 44455555555555555555555543  4455555555555555555555555555555555555


Q ss_pred             Cccccccc
Q 036729          745 LSENFFTG  752 (970)
Q Consensus       745 Ls~N~l~~  752 (970)
                      +++|++++
T Consensus        95 ls~N~i~~  102 (149)
T 2je0_A           95 LSGNKIKD  102 (149)
T ss_dssp             CTTSCCCS
T ss_pred             CCCCcCCC
Confidence            55555553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=2.4e-15  Score=143.04  Aligned_cols=130  Identities=21%  Similarity=0.234  Sum_probs=118.1

Q ss_pred             CCCcceEEEccCCcCc-ccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHh
Q 036729          688 NCSKLLKLSLRGNNLS-GKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQV  766 (970)
Q Consensus       688 ~l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  766 (970)
                      ..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..++.|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3578999999999998 78888889999999999999999877  77899999999999999999889998889999998


Q ss_pred             hhhCCCCccccc-CCccccCCCCCCEEeCCCCcCccccC---cccCCCCcCcEEecCC
Q 036729          767 ILDLSKNNFSGE-IPPSLGSLLKLERLNISYNQLQGQVP---ASLGKLTSLHVLNLSN  820 (970)
Q Consensus       767 ~L~ls~N~l~g~-ip~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~~l~ls~  820 (970)
                       |++++|.+++. .|..++.+++|++|++++|++++..+   ..+..+++|++||+++
T Consensus        93 -L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 -LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             -EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             -EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence             99999999974 45889999999999999999998776   5788999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=6.7e-15  Score=143.11  Aligned_cols=133  Identities=21%  Similarity=0.225  Sum_probs=97.0

Q ss_pred             cCCCceeccCcccc-CCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729          594 RNLSRLRLAHNHLT-GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD  672 (970)
Q Consensus       594 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  672 (970)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666666666666 56666667777777777777777765  5677777778888888777776777777778888888


Q ss_pred             cccCcCcCCC-CCCCCCCCcceEEEccCCcCcccCC---cccccccccceeccCCCcccc
Q 036729          673 LSSNNFNGTV-PAEIGNCSKLLKLSLRGNNLSGKIP---PEIGNLTALNVLNLQRNSLSG  728 (970)
Q Consensus       673 Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~  728 (970)
                      +++|++++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            8888777642 2567778888888888888876554   467778888888888887653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=1.1e-14  Score=142.83  Aligned_cols=114  Identities=25%  Similarity=0.299  Sum_probs=82.7

Q ss_pred             cccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEe
Q 036729          714 TALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLN  793 (970)
Q Consensus       714 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~  793 (970)
                      ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..++.|+. |++++|.+++..+..++.+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI-LYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE-EECCCCCccccCHHHhhCCcccCEEE
Confidence            34555555555555555555555666666666666666544455566666666 77777777766666778889999999


Q ss_pred             CCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          794 ISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       794 ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +++|++++..+..+..+++|++|++++|++.|.+|
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999987777777889999999999999999887

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=4.5e-14  Score=140.24  Aligned_cols=129  Identities=22%  Similarity=0.279  Sum_probs=96.9

Q ss_pred             cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC
Q 036729          621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN  700 (970)
Q Consensus       621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  700 (970)
                      +.+++++|.++. +|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            456666666663 444332  46777777777776 45667777788888888888888777777888888888888888


Q ss_pred             cCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccccccc
Q 036729          701 NLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGS  753 (970)
Q Consensus       701 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  753 (970)
                      .+++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            88877777788888888888888888877777788888888888888888753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.53  E-value=1.7e-13  Score=152.13  Aligned_cols=265  Identities=11%  Similarity=0.141  Sum_probs=152.5

Q ss_pred             CCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEE
Q 036729          450 CSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLIT  529 (970)
Q Consensus       450 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  529 (970)
                      +..++.+.+.+ .++.+....|.++ +|+.+.+..+ ++.+-..+|.++ +|+.+.+.+ .+....+.+|.++.+|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            35555555543 2333334445543 4666665544 443334444443 355555543 33333444444444444444


Q ss_pred             ccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCC
Q 036729          530 LYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN  609 (970)
Q Consensus       530 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~  609 (970)
                      +..|.++......|.                        ..+|+.+.+.++ ++.....+|..|++|+.+++..+ ++..
T Consensus       187 l~~n~l~~I~~~aF~------------------------~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I  240 (401)
T 4fdw_A          187 LSKTKITKLPASTFV------------------------YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI  240 (401)
T ss_dssp             CTTSCCSEECTTTTT------------------------TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred             cCCCcceEechhhEe------------------------ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence            444444333222222                        345555555532 44445556666777777777654 3433


Q ss_pred             CCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCccc-----CCccccccccCccceEEcccCcCcCCCCC
Q 036729          610 IPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELT-----GTIPFWLGSLQEIGELDLSSNNFNGTVPA  684 (970)
Q Consensus       610 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  684 (970)
                      -..+|.+ .+|+.+++. +.++.+...+|.+|++|+.+++.+|.+.     ...+..|.+|++|+.+++. +.+..+-..
T Consensus       241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~  317 (401)
T 4fdw_A          241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG  317 (401)
T ss_dssp             CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred             ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence            4445555 567777774 4455555667777777777777776654     2345567777777777777 346655566


Q ss_pred             CCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhccc-CCcEEECccccc
Q 036729          685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK-KLYELRLSENFF  750 (970)
Q Consensus       685 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l  750 (970)
                      +|.+|++|+.++|..| ++...+..|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.+
T Consensus       318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            7777777777777544 555555667777 777777777777666666666663 567777766543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=4.8e-14  Score=138.33  Aligned_cols=132  Identities=21%  Similarity=0.219  Sum_probs=91.3

Q ss_pred             cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC
Q 036729          621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN  700 (970)
Q Consensus       621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  700 (970)
                      +.+++++|.++. +|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            456666666553 23222  246677777777766665556666777777777777777666666677777777777777


Q ss_pred             cCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCc
Q 036729          701 NLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP  755 (970)
Q Consensus       701 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip  755 (970)
                      .+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            7776666667777778888888887776666667777888888888888876554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.53  E-value=1.4e-13  Score=154.07  Aligned_cols=122  Identities=11%  Similarity=0.086  Sum_probs=61.0

Q ss_pred             ccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCcc
Q 036729          589 ELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEI  668 (970)
Q Consensus       589 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  668 (970)
                      .|..+..++.+....+.+.   ...|..+.+|+.+.+..+ ++.+...+|.+|++|+.++|.++ ++.....+|.+|++|
T Consensus       271 ~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL  345 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred             ccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence            3444444444444433221   124455555555555433 34344445556666666666432 433334556666666


Q ss_pred             ceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccce
Q 036729          669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNV  718 (970)
Q Consensus       669 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~  718 (970)
                      +.+++..+ +..+-..+|.+|++|+.+++..+ +. .+...|.++++|+.
T Consensus       346 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          346 SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW  392 (394)
T ss_dssp             CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred             CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence            66666544 44444455666666666666543 11 12234555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.50  E-value=2.9e-13  Score=150.41  Aligned_cols=245  Identities=12%  Similarity=0.135  Sum_probs=116.6

Q ss_pred             CCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEcc
Q 036729          452 GLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLY  531 (970)
Q Consensus       452 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~  531 (970)
                      +|+.+.+..+ ++.+....|.++ +|+.+.+.. .+..+-+.+|.+|++|+.+++.+|.++......|. ...|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            3444444333 333333334442 355555543 33333444555555555555555555544444444 3555555554


Q ss_pred             ccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCC
Q 036729          532 NNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIP  611 (970)
Q Consensus       532 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  611 (970)
                      .+ +.......|.+|++|+.+++..+--.-....|.+ .+|+.+++. +.++.....+|..|++|+.+++.+|.+..   
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~---  285 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND---  285 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC---
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC---
Confidence            22 4444445555556666665554311101112222 344444442 22332333344444444444444433220   


Q ss_pred             cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCc
Q 036729          612 SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSK  691 (970)
Q Consensus       612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  691 (970)
                                      +....+.+.+|.+|++|+.+.+. +.++.....+|.+|++|+.++|..| ++.+-+.+|.+| +
T Consensus       286 ----------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          286 ----------------DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G  346 (401)
T ss_dssp             ----------------CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred             ----------------CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence                            00012334455556666666665 2344444455666666666666433 444445566666 6


Q ss_pred             ceEEEccCCcCcccCCccccccc-ccceeccCCCc
Q 036729          692 LLKLSLRGNNLSGKIPPEIGNLT-ALNVLNLQRNS  725 (970)
Q Consensus       692 L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~  725 (970)
                      |+.+++.+|.+....+..|.+++ .++.|.+..+.
T Consensus       347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            66666666666555555555553 56666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.49  E-value=3.3e-13  Score=150.90  Aligned_cols=237  Identities=12%  Similarity=0.104  Sum_probs=104.9

Q ss_pred             cccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCc
Q 036729          542 SLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELN  621 (970)
Q Consensus       542 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  621 (970)
                      .|.+|.+|+.+.+..+..+-....|.++.+|+.+++..+ ++.....+|..+..|+.+.+..+...  +.+.+....+|+
T Consensus       157 aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~  233 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK  233 (394)
T ss_dssp             TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred             hhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence            444555555555544332212224444455555555443 22233444555555555555443221  112223334555


Q ss_pred             EEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCc
Q 036729          622 FLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN  701 (970)
Q Consensus       622 ~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  701 (970)
                      .+.+... ++......+.+|..++.+.+..+... .....|..+..++.+....+.+   ....|..+.+|+.+.+.++ 
T Consensus       234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-  307 (394)
T 4fs7_A          234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-  307 (394)
T ss_dssp             EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-
T ss_pred             eEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-
Confidence            5555422 22223334555555555555444221 2233444445555444443321   1223444555555554432 


Q ss_pred             CcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCc
Q 036729          702 LSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP  781 (970)
Q Consensus       702 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~  781 (970)
                      +.......|.++++|+.+++.++ ++.....+|.+|++|+.+                         ++..| ++..-..
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i-------------------------~lp~~-l~~I~~~  360 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI-------------------------NFPLS-LRKIGAN  360 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE-------------------------CCCTT-CCEECTT
T ss_pred             cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE-------------------------EECcc-ccEehHH
Confidence            33222334444444444444322 333333344444444444                         44333 3333345


Q ss_pred             cccCCCCCCEEeCCCCcCccccCcccCCCCcCcEE
Q 036729          782 SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVL  816 (970)
Q Consensus       782 ~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l  816 (970)
                      +|.++.+|+.+++..+ ++ .+...|.++++|+.+
T Consensus       361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            6667777777777554 21 234456666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=5.2e-16  Score=155.48  Aligned_cols=151  Identities=23%  Similarity=0.336  Sum_probs=88.5

Q ss_pred             CccceEEcccCcCcCCCCC------CCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccC
Q 036729          666 QEIGELDLSSNNFNGTVPA------EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK  739 (970)
Q Consensus       666 ~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  739 (970)
                      ..++.++++.+.+.|.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            3444444444444444443      44455555555555555554 33 4555555555555555555 34445555566


Q ss_pred             CcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCC-ccccCCCCCCEEeCCCCcCccccCcc----------cC
Q 036729          740 LYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIP-PSLGSLLKLERLNISYNQLQGQVPAS----------LG  808 (970)
Q Consensus       740 L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip-~~~~~l~~L~~L~ls~N~l~~~~p~~----------l~  808 (970)
                      |+.|++++|++++ +| .+..++.|+. |++++|.+++..+ ..+..+++|++|++++|.+++.+|..          +.
T Consensus        95 L~~L~L~~N~l~~-l~-~~~~l~~L~~-L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           95 LEELWISYNQIAS-LS-GIEKLVNLRV-LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             CSEEEEEEEECCC-HH-HHHHHHHSSE-EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             CCEEECcCCcCCc-CC-ccccCCCCCE-EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            6666666666664 33 4566666665 6666666664322 35677788888888888887776653          67


Q ss_pred             CCCcCcEEecCCCccc
Q 036729          809 KLTSLHVLNLSNNHLQ  824 (970)
Q Consensus       809 ~l~~L~~l~ls~N~l~  824 (970)
                      .+++|++||  +|+++
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            777888776  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=2.1e-15  Score=151.09  Aligned_cols=136  Identities=23%  Similarity=0.231  Sum_probs=80.7

Q ss_pred             ccCcCCCceeccCccccCCCCc------ccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccc
Q 036729          591 AMSRNLSRLRLAHNHLTGNIPS------EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS  664 (970)
Q Consensus       591 ~~~~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~  664 (970)
                      .....++.++++.+.++|..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            3445566666777766666655      66667777777777777665 44 5666666677777666666 34555555


Q ss_pred             cCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCC-cccccccccceeccCCCccccccc
Q 036729          665 LQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNIP  731 (970)
Q Consensus       665 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p  731 (970)
                      +++|++|++++|++++. | .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|
T Consensus        92 ~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           92 ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            56666666666666642 2 34555556666666655553221 234555555555555555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=2.3e-13  Score=133.16  Aligned_cols=82  Identities=22%  Similarity=0.173  Sum_probs=32.8

Q ss_pred             ccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccch--hhhcccCCcEEE
Q 036729          667 EIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS--TIQQCKKLYELR  744 (970)
Q Consensus       667 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~  744 (970)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++. +|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence            344444444444332  233444444444444444443322223444444444444444422 222  334444444444


Q ss_pred             Ccccccc
Q 036729          745 LSENFFT  751 (970)
Q Consensus       745 Ls~N~l~  751 (970)
                      +++|+++
T Consensus       120 l~~N~i~  126 (176)
T 1a9n_A          120 ILRNPVT  126 (176)
T ss_dssp             CCSSGGG
T ss_pred             ecCCCCC
Confidence            4444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=1.9e-13  Score=133.73  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=79.8

Q ss_pred             cccCCCCcEEEccCCcCccCCcccCcCcC-cccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcc
Q 036729          614 FGKLTELNFLDLSFNSFTGQIAPQLSKCA-KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL  692 (970)
Q Consensus       614 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  692 (970)
                      +.++.+|++|++++|.++.. +. +..+. +|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            44455566666666655532 32 33333 566666666666543  345566666666666666665444444666667


Q ss_pred             eEEEccCCcCcccCCc--ccccccccceeccCCCccccccch---hhhcccCCcEEECcccccc
Q 036729          693 LKLSLRGNNLSGKIPP--EIGNLTALNVLNLQRNSLSGNIPS---TIQQCKKLYELRLSENFFT  751 (970)
Q Consensus       693 ~~L~L~~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~  751 (970)
                      ++|++++|.++. +|.  .+..+++|++|++++|.++...+.   .+..+++|+.||+++|...
T Consensus        91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777776643 333  566677777777777777643222   3677777888887777655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=6.2e-13  Score=128.99  Aligned_cols=109  Identities=27%  Similarity=0.292  Sum_probs=81.9

Q ss_pred             cceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCC
Q 036729          716 LNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNIS  795 (970)
Q Consensus       716 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls  795 (970)
                      .+.+++++|.++. +|..+  .+.|+.|+|++|++++..|..|..++.|+. |+|++|.+++..|..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTR-LDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSE-EECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCE-EECCCCCcCccChhhccCCCCCCEEECC
Confidence            3455555555543 33333  255666777777777666666777777776 7777777776666778889999999999


Q ss_pred             CCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          796 YNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       796 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +|+|++..|..+..+++|++|++++|+++|.++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998888889999999999999999999887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=2.2e-12  Score=125.46  Aligned_cols=108  Identities=24%  Similarity=0.308  Sum_probs=76.0

Q ss_pred             ceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCC
Q 036729          717 NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISY  796 (970)
Q Consensus       717 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~  796 (970)
                      +.+++++|.++ .+|..+.  +.|+.|+|++|++++..|..+..++.|+. |+|++|.+++..+..|+++++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQ-LYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCE-EECCCCCCCccChhHhCCcchhhEEECCC
Confidence            34555555553 2333332  45666666666666666666666666666 67777777765556678888999999999


Q ss_pred             CcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          797 NQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       797 N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      |+|++..|..+..+++|++|++++|++.+.++
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99987777778889999999999999988876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=5.3e-12  Score=122.38  Aligned_cols=108  Identities=21%  Similarity=0.207  Sum_probs=67.3

Q ss_pred             ccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729          644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR  723 (970)
Q Consensus       644 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~  723 (970)
                      .+++++++|.++. +|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3455555555543 333322  5556666666666666566666666666666666666655555566666777777777


Q ss_pred             CccccccchhhhcccCCcEEECccccccccC
Q 036729          724 NSLSGNIPSTIQQCKKLYELRLSENFFTGSI  754 (970)
Q Consensus       724 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i  754 (970)
                      |++++..+..|..+++|+.|+|++|++++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            7776666666777777777777777777543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.1e-11  Score=120.62  Aligned_cols=105  Identities=21%  Similarity=0.226  Sum_probs=63.7

Q ss_pred             cEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCC
Q 036729          645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN  724 (970)
Q Consensus       645 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N  724 (970)
                      +.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34455555443 2333332  45556666666666555556666666666666666666554445566666777777777


Q ss_pred             ccccccchhhhcccCCcEEECccccccc
Q 036729          725 SLSGNIPSTIQQCKKLYELRLSENFFTG  752 (970)
Q Consensus       725 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  752 (970)
                      ++++..+..|..+++|+.|+|++|++..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            7666555556777777777777777764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.29  E-value=1.6e-10  Score=129.12  Aligned_cols=106  Identities=14%  Similarity=0.237  Sum_probs=44.3

Q ss_pred             ccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcc
Q 036729          613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL  692 (970)
Q Consensus       613 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  692 (970)
                      .|.++++|+.+.+. +.++.+...+|.+|.+|+.+.|..+ ++.....+|.+|.+|+.+.+..+ ++.+-..+|.+|++|
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence            34444445544443 2233333344555555555555432 33233344555555555555432 333333445555555


Q ss_pred             eEEEccCCcCcccCCcccccccccceeccCCC
Q 036729          693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN  724 (970)
Q Consensus       693 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N  724 (970)
                      +.+++.++....   ..+...++|+.+.+..+
T Consensus       360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             CEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            555555543221   23344445555554443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.28  E-value=1.5e-10  Score=129.26  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             CcCCCCcC-CCCeeecccccccccCCccccCCCCCCEEEccccc---CCCcCCcccccCCCCCEEeccccccCCcccccc
Q 036729          396 PPEIGNLS-KLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQ---MSGSIPRELTNCSGLTEIDFFGNHFSGSIPETM  471 (970)
Q Consensus       396 ~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  471 (970)
                      ..+|.++. .|+.+.+.++ ++..-..+|.++++|+.+.+..+.   ++..-..+|.+|.+|+.+.+..+ ++......|
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            34566653 4777777643 443444566666667766665542   33333445556666665555433 332333445


Q ss_pred             cCCCCccEEeeccccCCCCCCCcccccccccEEecc
Q 036729          472 GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALA  507 (970)
Q Consensus       472 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls  507 (970)
                      ..+.+|+.+.+..+ +.......|..|..|+.+.+.
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             hhhcccccccccce-eeeecccceeccccccccccc
Confidence            55555555555432 222333345555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=2.6e-11  Score=133.10  Aligned_cols=105  Identities=26%  Similarity=0.319  Sum_probs=64.4

Q ss_pred             ccCCC-ccccccchhhhcccCCcEEECcc-ccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC
Q 036729          720 NLQRN-SLSGNIPSTIQQCKKLYELRLSE-NFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN  797 (970)
Q Consensus       720 ~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N  797 (970)
                      +.+++ .+++ +|. +..+++|+.|+|++ |++++..|..|+.++.|+. |+|++|.|++..|..|+++++|+.|||++|
T Consensus        14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRN-LTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSE-EECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCE-EECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            44444 4442 333 45555555555553 5555555555555555655 666666666666666777777777777777


Q ss_pred             cCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          798 QLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       798 ~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +|++..|..+..++ |+.|++++|++.|.++
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            77765555555555 7777777777777766

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=1.2e-12  Score=143.97  Aligned_cols=114  Identities=25%  Similarity=0.268  Sum_probs=64.0

Q ss_pred             cccceeccCCCccccccchhh-----hcccCCcEEECccccccc----cCchhhhhhhhhHhhhhCCCCcccc----cCC
Q 036729          714 TALNVLNLQRNSLSGNIPSTI-----QQCKKLYELRLSENFFTG----SIPADLGRLTELQVILDLSKNNFSG----EIP  780 (970)
Q Consensus       714 ~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~~L~ls~N~l~g----~ip  780 (970)
                      ++|+.|+|++|.++......+     ...+.|++|+|++|.++.    .++..+..++.|+. |||++|.++.    .++
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~-L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH-LSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCE-EECTTSSCHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCE-EeCCCCCCCcHHHHHHH
Confidence            344455555554443322222     123445555555555543    12233344445554 5555555543    224


Q ss_pred             ccccCCCCCCEEeCCCCcCccc----cCcccCCCCcCcEEecCCCcccccCC
Q 036729          781 PSLGSLLKLERLNISYNQLQGQ----VPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       781 ~~~~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      ..+...++|+.|||++|.++..    ++..+...++|++||+++|+++....
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~  256 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR  256 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred             HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence            4566677888888888888763    34445556788888888888876544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=9.6e-13  Score=144.70  Aligned_cols=187  Identities=19%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             CCCCcEEEccCCcCccCCcccCc-----CcCcccEEEccCCcccCCccccc-cccCccceEEcccCcCcCCCCCCC----
Q 036729          617 LTELNFLDLSFNSFTGQIAPQLS-----KCAKLAHLLLSNNELTGTIPFWL-GSLQEIGELDLSSNNFNGTVPAEI----  686 (970)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~l~-----~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l----  686 (970)
                      ++.|++|++++|.++......+.     .+.+|++|+|++|.++......+ ..+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45678888888887754333222     22577777777777654322222 234566666666666653221111    


Q ss_pred             -CCCCcceEEEccCCcCccc----CCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhh
Q 036729          687 -GNCSKLLKLSLRGNNLSGK----IPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRL  761 (970)
Q Consensus       687 -~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l  761 (970)
                       ...++|++|+|++|.++..    ++..+...++|++|+|++|.++.....                    .++..+...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~  210 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRN  210 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcC
Confidence             1234555555555555431    112223344455555555554432100                    112233333


Q ss_pred             hhhHhhhhCCCCcccc----cCCccccCCCCCCEEeCCCCcCccccCcccCCC---C--cCcEEe--cCCCccc
Q 036729          762 TELQVILDLSKNNFSG----EIPPSLGSLLKLERLNISYNQLQGQVPASLGKL---T--SLHVLN--LSNNHLQ  824 (970)
Q Consensus       762 ~~L~~~L~ls~N~l~g----~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l---~--~L~~l~--ls~N~l~  824 (970)
                      +.|+. |||++|.++.    .++..+...++|++|||++|.|+......+..+   .  .|+.+.  +..|.++
T Consensus       211 ~~L~~-L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          211 RQLQE-LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             SCCCE-EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCcCe-EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            44444 4555554443    223345566789999999999887655544433   1  155555  4444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=2.7e-10  Score=124.93  Aligned_cols=101  Identities=22%  Similarity=0.235  Sum_probs=49.5

Q ss_pred             EEccCC-cCccCCcccCcCcCcccEEEccC-CcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCC
Q 036729          623 LDLSFN-SFTGQIAPQLSKCAKLAHLLLSN-NELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGN  700 (970)
Q Consensus       623 L~Ls~n-~l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  700 (970)
                      ++++++ .+++ +|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555 5553 344 55555555555553 5555544455555555555555555555544444555555555555555


Q ss_pred             cCcccCCcccccccccceeccCCCcc
Q 036729          701 NLSGKIPPEIGNLTALNVLNLQRNSL  726 (970)
Q Consensus       701 ~l~~~~~~~l~~l~~L~~L~L~~N~l  726 (970)
                      +|++..+..+..++ |+.|+|.+|.+
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCc
Confidence            55443333333332 44444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.03  E-value=1.3e-08  Score=112.90  Aligned_cols=301  Identities=11%  Similarity=0.075  Sum_probs=134.9

Q ss_pred             cccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccc
Q 036729          422 EIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL  501 (970)
Q Consensus       422 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L  501 (970)
                      ++....+|+.+.+.. .++.+-..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +...-..+|..+ +|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            455566778877754 344444567888888888888643 554555567665 5666666533 333333445444 67


Q ss_pred             cEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCC
Q 036729          502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNS  581 (970)
Q Consensus       502 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~  581 (970)
                      +.+.+..+ +.......|.+. .++.+.+.. .++......+..+..++...+..+............          + 
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~----------~-  181 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY----------N-  181 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE----------E-
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceec----------c-
Confidence            77777543 222333334333 344333322 222233344555555555555443321100000000          0 


Q ss_pred             CCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCcccc
Q 036729          582 FSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFW  661 (970)
Q Consensus       582 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~  661 (970)
                      ........+..+..+..+.+.... .......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ ++.....+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a  258 (379)
T 4h09_A          182 KNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL  258 (379)
T ss_dssp             TTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred             cccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence            000011112222233333322211 1112233444444555544432 22233334455555555555433 33233344


Q ss_pred             ccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCc
Q 036729          662 LGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY  741 (970)
Q Consensus       662 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  741 (970)
                      |.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++......|.++++|+.+++..+ ++.....+|.+|++|+
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            444555555554332 33233334555555555555554444333444555555555555432 3333334455555555


Q ss_pred             EEECc
Q 036729          742 ELRLS  746 (970)
Q Consensus       742 ~L~Ls  746 (970)
                      .+++.
T Consensus       337 ~i~ip  341 (379)
T 4h09_A          337 TISYP  341 (379)
T ss_dssp             CCCCC
T ss_pred             EEEEC
Confidence            54443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.01  E-value=2e-08  Score=111.49  Aligned_cols=318  Identities=10%  Similarity=0.070  Sum_probs=154.3

Q ss_pred             cccccccccccccCCcccccCCCCcCCCCcCCCCeeecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCC
Q 036729          373 RSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG  452 (970)
Q Consensus       373 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  452 (970)
                      .++....+|+.+.+.. .++.....+|.+|.+|+.+++.++ ++..-..+|..+ +|+.+.+..+ +...-...|.++ +
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~  114 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D  114 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred             cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence            3455566777777754 344344556777888888877654 443334455554 4666555432 322223344443 5


Q ss_pred             CCEEeccccccCCcccccccCCCCccEEeeccccCCCCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccc
Q 036729          453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYN  532 (970)
Q Consensus       453 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~  532 (970)
                      |+.+++..+ +.......|... +++.+.+..+ ++......+..+..++.+.+..+.........+..-          
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~----------  181 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYN----------  181 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEE----------
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecc----------
Confidence            666666543 221222233332 3444443322 222333445555555555554433221110000000          


Q ss_pred             cccccCCCccccCCCCCcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCc
Q 036729          533 NSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPS  612 (970)
Q Consensus       533 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  612 (970)
                        ........+..+..+..+.+....-.                        .....+..+.+|+.+.+..+ +......
T Consensus       182 --~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------i~~~~f~~~~~l~~i~~~~~-~~~i~~~  234 (379)
T 4h09_A          182 --KNKTILESYPAAKTGTEFTIPSTVKT------------------------VTAYGFSYGKNLKKITITSG-VTTLGDG  234 (379)
T ss_dssp             --TTSSEEEECCTTCCCSEEECCTTCCE------------------------ECTTTTTTCSSCSEEECCTT-CCEECTT
T ss_pred             --cccceeccccccccccccccccceeE------------------------Eeecccccccccceeeeccc-eeEEccc
Confidence              00000111222223333332222111                        12223334444554444332 2222234


Q ss_pred             ccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcc
Q 036729          613 EFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL  692 (970)
Q Consensus       613 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  692 (970)
                      .|.++..|+.+.+..+ ++.+-..+|.+|.+|+.+.+..+ +.......|.++++|+.+++.++.+..+-..+|.+|++|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            4555666666666544 44444455666666666666533 333334456666777777776666665555667777777


Q ss_pred             eEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccC
Q 036729          693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKK  739 (970)
Q Consensus       693 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  739 (970)
                      +.+.|..+ ++.+-..+|.++++|+.+.+..+ ++.....+|.++..
T Consensus       313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            77777543 44444456777777777777654 44444556666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=6.3e-10  Score=120.98  Aligned_cols=205  Identities=15%  Similarity=0.183  Sum_probs=113.2

Q ss_pred             CCCEEEEECCCCCCcc-c-------cccCccCCCCCcEEECCCCCCC---------CCCCccccCCCCCcEeecCCCcCc
Q 036729           65 QKHVVGLNLSSSGLSG-S-------ISRDFLNLTSLETLDLSSNSLT---------GLIPSELGQLQNLRILLLYSNSFS  127 (970)
Q Consensus        65 ~~~v~~L~L~~~~l~~-~-------~~~~l~~l~~L~~L~Ls~n~~~---------~~~p~~l~~l~~L~~L~Ls~n~~~  127 (970)
                      ..+|+.|.+......| .       +..++..+++|+.|.+......         +.+...+..+++|+.|+|+++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            4568888877665543 2       2344567788888888654331         234455667778888888766311


Q ss_pred             CCCCcCCCCCCCCcEEEccCccCCccCCcccc--CCcccchhhcccc--ccccCCCccccCCceeeEEEcCCCcCCCCCc
Q 036729          128 GKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIG--NLTELRELAIAYC--QLNGSIPVEIGNLKHLTSLDLQMNKLSGLIP  203 (970)
Q Consensus       128 ~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~--~l~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~  203 (970)
                       .++. +. +++|++|++..|.+.......++  .+++|++|+|+.+  ...+..                  .+... .
T Consensus       186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~------------------~~~~l-~  243 (362)
T 2ra8_A          186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG------------------DMNVF-R  243 (362)
T ss_dssp             -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS------------------CGGGT-G
T ss_pred             -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch------------------hHHHH-H
Confidence             2333 32 66777777766655433323332  3455555554321  100000                  00000 0


Q ss_pred             ccc--cCCcccccccccccccCCCCccccc---CCCCCcEEEccCCcCccc----cCccccCCCCCCEEEccCccccccC
Q 036729          204 EAI--HGCEELQKFAASNNMLEGTIPSSIV---LLKSLQILNLANNSLSGS----IPVELSHLFNLRYLNLLGNIFDGEI  274 (970)
Q Consensus       204 ~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~  274 (970)
                      ..+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            111  2356666666666665543332332   467888888888887754    2333456788888888888877654


Q ss_pred             CccccC-CCCccEEECcCCc
Q 036729          275 PSELNK-LAQLEELDLSKNN  293 (970)
Q Consensus       275 ~~~l~~-l~~L~~L~L~~n~  293 (970)
                      ...+.. +  ...++++.+.
T Consensus       324 ~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          324 KKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHc--CCEEEecCCc
Confidence            444443 2  3557887775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.68  E-value=4.8e-09  Score=114.02  Aligned_cols=139  Identities=17%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             ccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccc--cccccceeccCC--Cccccc-----c
Q 036729          660 FWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIG--NLTALNVLNLQR--NSLSGN-----I  730 (970)
Q Consensus       660 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~L~~--N~l~~~-----~  730 (970)
                      ..+..+|+|+.|+|++|.-. .++. +. +++|+.|++..+.+.......+.  .+++|+.|+|+.  |...+.     +
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            34455666777777665211 1222 22 66777777776665533222332  466777776642  221111     0


Q ss_pred             chhh--hcccCCcEEECccccccccCchhhh---hhhhhHhhhhCCCCccccc----CCccccCCCCCCEEeCCCCcCcc
Q 036729          731 PSTI--QQCKKLYELRLSENFFTGSIPADLG---RLTELQVILDLSKNNFSGE----IPPSLGSLLKLERLNISYNQLQG  801 (970)
Q Consensus       731 p~~~--~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~~L~ls~N~l~g~----ip~~~~~l~~L~~L~ls~N~l~~  801 (970)
                      ...+  ..+++|+.|+|++|.++...+..+.   .++.|+. |||+.|.+++.    ++..+..+++|+.|+|++|.++.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~-LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET-MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSE-EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCE-EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            1111  2467788888887777644333332   2444554 55555555432    22233345556666666665554


Q ss_pred             c
Q 036729          802 Q  802 (970)
Q Consensus       802 ~  802 (970)
                      .
T Consensus       322 ~  322 (362)
T 2ra8_A          322 E  322 (362)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=3.5e-10  Score=116.21  Aligned_cols=23  Identities=9%  Similarity=-0.029  Sum_probs=16.4

Q ss_pred             CCCccceEecCCCCCEEEEECCC
Q 036729           53 MCSWHGVTCSDDQKHVVGLNLSS   75 (970)
Q Consensus        53 ~c~w~gv~c~~~~~~v~~L~L~~   75 (970)
                      .|+|.|+.|+....+|+.+-..+
T Consensus        77 l~~~~g~i~~~~~~ki~~~v~~~   99 (267)
T 3rw6_A           77 LKAVNYKILDRENRRISIIINSS   99 (267)
T ss_dssp             HHHTTSSCBCTTSCBCCCEEEEC
T ss_pred             HHhcCcEEECCCCCEEEEEEecC
Confidence            58999999986555665554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.31  E-value=2.1e-08  Score=98.18  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=40.3

Q ss_pred             cccCccCCCCCcEEECCCC-CCCCC----CCccccCCCCCcEeecCCCcCcCC----CCcCCCCCCCCcEEEccCccCCc
Q 036729           82 ISRDFLNLTSLETLDLSSN-SLTGL----IPSELGQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQVLRIGDNLLWG  152 (970)
Q Consensus        82 ~~~~l~~l~~L~~L~Ls~n-~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~  152 (970)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+.+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3344556677777777777 66532    334455566677777777766532    22223334556666666665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.7e-07  Score=96.17  Aligned_cols=80  Identities=25%  Similarity=0.326  Sum_probs=45.2

Q ss_pred             hcccCCcEEECccccccc--cCchhhhhhhhhHhhhhCCCCcccccCCccccCCC--CCCEEeCCCCcCccccCc-----
Q 036729          735 QQCKKLYELRLSENFFTG--SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLL--KLERLNISYNQLQGQVPA-----  805 (970)
Q Consensus       735 ~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~--~L~~L~ls~N~l~~~~p~-----  805 (970)
                      .+++.|+.|+|++|++++  .+|..+..++.|+. |+|++|.+++.  ..+..+.  +|++|+|++|.+++.+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~-L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI-LNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCE-EECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCE-EECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            445666666666666665  34455555555555 66666665543  2233333  666677777766665552     


Q ss_pred             --ccCCCCcCcEEe
Q 036729          806 --SLGKLTSLHVLN  817 (970)
Q Consensus       806 --~l~~l~~L~~l~  817 (970)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              244556666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.16  E-value=3.1e-07  Score=89.83  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=67.2

Q ss_pred             CCCCCcceEEEccCC-cCccc----CCcccccccccceeccCCCcccccc----chhhhcccCCcEEECccccccccCch
Q 036729          686 IGNCSKLLKLSLRGN-NLSGK----IPPEIGNLTALNVLNLQRNSLSGNI----PSTIQQCKKLYELRLSENFFTGSIPA  756 (970)
Q Consensus       686 l~~l~~L~~L~L~~N-~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~ip~  756 (970)
                      +...++|++|+|++| .+...    +...+...++|++|+|++|.+....    .+.+...+.|++|+|++|.++..-- 
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~-  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI-  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH-
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH-
Confidence            445667777777777 66532    1223334456666666666654322    2233444556666666665542100 


Q ss_pred             hhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeC--CCCcCccc----cCcccCCCCcCcEEecCCCccc
Q 036729          757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNI--SYNQLQGQ----VPASLGKLTSLHVLNLSNNHLQ  824 (970)
Q Consensus       757 ~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~l--s~N~l~~~----~p~~l~~l~~L~~l~ls~N~l~  824 (970)
                           .               .+...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus       111 -----~---------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 -----L---------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             -----H---------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             -----H---------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                 0               12344555667888888  77887754    3344455578888888888764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.77  E-value=3.9e-06  Score=79.55  Aligned_cols=35  Identities=6%  Similarity=-0.026  Sum_probs=19.9

Q ss_pred             CCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCc
Q 036729          114 QNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN  148 (970)
Q Consensus       114 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n  148 (970)
                      .+|++||++++.++...-..+..+++|++|+|++|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            35666666666655444444555555666665555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.75  E-value=8.6e-06  Score=77.15  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=45.5

Q ss_pred             ceeeEEEcCCCcCCCCCcccccCCcccccccccccc-cCCCCcccccCC----CCCcEEEccCCc-CccccCccccCCCC
Q 036729          186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNM-LEGTIPSSIVLL----KSLQILNLANNS-LSGSIPVELSHLFN  259 (970)
Q Consensus       186 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~  259 (970)
                      .+|++||++++.|+...-..+.++++|++|++++|. +++..-..++.+    ++|++|+|++|. ++...-..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356777777776665555555566666666666653 443333334432    356666666653 44333334445555


Q ss_pred             CCEEEccCcc
Q 036729          260 LRYLNLLGNI  269 (970)
Q Consensus       260 L~~L~L~~n~  269 (970)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            5555555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.74  E-value=0.0014  Score=59.09  Aligned_cols=59  Identities=19%  Similarity=0.327  Sum_probs=49.6

Q ss_pred             hhCCCCccc-ccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          768 LDLSKNNFS-GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       768 L~ls~N~l~-g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +|.+++.++ ..+|..+.  .+|+.|||++|+|+..-+..|..+++|++|++++|++.|.+-
T Consensus        13 v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            677888876 45665443  468999999999998888889999999999999999999887

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.13  E-value=0.0014  Score=63.29  Aligned_cols=114  Identities=16%  Similarity=0.177  Sum_probs=54.6

Q ss_pred             CCCcceEEEccCC-cCccc----CCcccccccccceeccCCCcccccc----chhhhcccCCcEEECccccccccCchhh
Q 036729          688 NCSKLLKLSLRGN-NLSGK----IPPEIGNLTALNVLNLQRNSLSGNI----PSTIQQCKKLYELRLSENFFTGSIPADL  758 (970)
Q Consensus       688 ~l~~L~~L~L~~N-~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~ip~~l  758 (970)
                      +-+.|+.|+|++| .+...    +.+.+..-+.|+.|+|++|++....    .+.+..-+.|+.|+|+.|.+...-   .
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G---a  115 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL---L  115 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH---H
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH---H
Confidence            3456666666664 54321    1122333345666666666654322    223334455555555555554211   0


Q ss_pred             hhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC---cCccc----cCcccCCCCcCcEEecCCCc
Q 036729          759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN---QLQGQ----VPASLGKLTSLHVLNLSNNH  822 (970)
Q Consensus       759 ~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N---~l~~~----~p~~l~~l~~L~~l~ls~N~  822 (970)
                         ..               +-..+..-+.|++|+|++|   .+...    +-+.+..-+.|..|++++|.
T Consensus       116 ---~a---------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ---AR---------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             ---HH---------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             ---HH---------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence               11               1123344456777777754   33322    33344444667777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.00  E-value=0.0018  Score=62.54  Aligned_cols=63  Identities=22%  Similarity=0.295  Sum_probs=26.7

Q ss_pred             CceeeEEEcCCC-cCCCC----CcccccCCcccccccccccccCCCC----cccccCCCCCcEEEccCCcCc
Q 036729          185 LKHLTSLDLQMN-KLSGL----IPEAIHGCEELQKFAASNNMLEGTI----PSSIVLLKSLQILNLANNSLS  247 (970)
Q Consensus       185 l~~L~~L~Ls~n-~i~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~  247 (970)
                      -+.|++|+|++| +|...    +.+++..-+.|+.|+|++|.+.+..    ...+..-+.|++|+|++|.+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            345555555553 44322    1122333344444444444443221    222333445555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.85  E-value=0.011  Score=53.11  Aligned_cols=57  Identities=18%  Similarity=0.208  Sum_probs=38.9

Q ss_pred             EEEccCCcCc-ccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccc
Q 036729          694 KLSLRGNNLS-GKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG  752 (970)
Q Consensus       694 ~L~L~~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  752 (970)
                      .++.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4556666654 23444332  357778888888877777777888888888888888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	970
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-26
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-23
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-23
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-22
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-09
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-06
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  109 bits (272), Expect = 1e-26
 Identities = 80/305 (26%), Positives = 119/305 (39%), Gaps = 10/305 (3%)

Query: 30  LLRIKQELVDPTGILENWSARAHMC--SWHGVTCSDDQK--HVVGLNLSSSGLSG--SIS 83
           LL+IK++L +PT  L +W      C  +W GV C  D +   V  L+LS   L     I 
Sbjct: 11  LLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69

Query: 84  RDFLNLTSLETLDLSSN-SLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQV 142
               NL  L  L +    +L G IP  + +L  L  L +   + SG IP  +  +  L  
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 143 LRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLI 202
           L    N L G +PP I +L  L  +     +++G+IP   G+   L +            
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 203 PEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRY 262
                    L     S NMLEG         K+         +       ++    NL  
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAKNSLAFDLGKVGLSKNLNG 248

Query: 263 LNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSI 322
           L+L  N   G +P  L +L  L  L++S NNL G I      L+  +    ++N      
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307

Query: 323 PIKFC 327
           P+  C
Sbjct: 308 PLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 7/284 (2%)

Query: 576 DLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGN--IPSEFGKLTELNFLDLSFN-SFTG 632
           D  N ++ G +      +  ++ L L+  +L     IPS    L  LNFL +    +  G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 633 QIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692
            I P ++K  +L +L +++  ++G IP +L  ++ +  LD S N  +GT+P  I +   L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 693 LKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTG 752
           + ++  GN +SG IP   G+ + L        +              L  + LS N   G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 753 SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTS 812
                 G     Q I     +         L   L    L    N++ G +P  L +L  
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL--RNNRIYGTLPQGLTQLKF 269

Query: 813 LHVLNLSNNHLQGQLP--LTFSGFPLSSFLGNAKLCGPPLLSCS 854
           LH LN+S N+L G++P       F +S++  N  LCG PL +C+
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 9e-16
 Identities = 61/260 (23%), Positives = 95/260 (36%), Gaps = 28/260 (10%)

Query: 357 LQQLDLSDNSFKG--ELPRSLDKLEELTDLLL-NNNSFTGSFPPEIGNLSKLENLFLFDN 413
           +  LDLS  +      +P SL  L  L  L +   N+  G  PP I  L++L  L++   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 414 MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGK 473
            ++G IP  + +++TL  +    N +SG++P  +++   L  I F GN  SG+IP++ G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 474 LKNL-----------------------VILQLRQNDLSGPIPASLGYCKRLQQIALADNK 510
              L                       +       ++     + L    +  Q       
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 511 LSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSN 570
                         L  + L NN   G LP  L QLK L  +N S N   G I       
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 571 SLTALDLTNNSF--SGPIPS 588
                   NN      P+P+
Sbjct: 292 RFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 3e-15
 Identities = 55/264 (20%), Positives = 89/264 (33%), Gaps = 26/264 (9%)

Query: 279 NKLAQLEELDLSKNNLSGSISLLNT--QLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQL 336
            +  ++  LDLS  NL     + ++   L  L  L +                 + L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 337 ILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFP 396
            +    +SG  P  L +  +L  LD S N+  G LP S+  L  L  +  + N  +G+ P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 397 PEIGNLSKL-----------------------ENLFLFDNMITGKIPVEIGKLQTLSAIY 433
              G+ SKL                                +       +      +   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 434 LYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA 493
                       ++     L  +D   N   G++P+ + +LK L  L +  N+L G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 494 SLGYCKRLQQIALADNKLSGSVPL 517
             G  +R    A A+NK     PL
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 5e-14
 Identities = 65/292 (22%), Positives = 105/292 (35%), Gaps = 48/292 (16%)

Query: 183 GNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLA 242
                + +LDL    L    P                      IPSS+  L  L  L + 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYP----------------------IPSSLANLPYLNFLYIG 84

Query: 243 NN-SLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLL 301
              +L G IP  ++ L  L YL +      G IP  L+++  L  LD S N LSG++   
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 302 NTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLD 361
            + L NL  +    N  +G+IP  +   +     + ++RN+L+G+ P      +      
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 362 LSD----------------------NSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEI 399
             +                       +        +   + L  L L NN   G+ P  +
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 400 GNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCS 451
             L  L +L +  N + G+IP + G LQ        +N+     P  L  C+
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  100 bits (248), Expect = 6e-23
 Identities = 69/385 (17%), Positives = 130/385 (33%), Gaps = 36/385 (9%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
              +   L  + ++ ++S+   +L  + TL      +  +    +  L NL  +   +N 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ 77

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIG-- 183
            +   P  +  L KL  + + +N +    P           L          +       
Sbjct: 78  LTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 184 -------NLKHLTSLDLQMNKLSGLIPEAIHGCEEL----QKFAASNNMLEGTIPSSIVL 232
                   +  +++L    +         +   + L           +  + +  S +  
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKN 292
           L +L+ L   NN +S   P+ +    NL  L+L GN         L  L  L +LDL+ N
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 293 NLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELL 352
            +S    L  + L  L  L L  N  +   P+      ++L+        +S    L+ L
Sbjct: 252 QISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 353 RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD 412
                  L L  N+     P  +  L +L  L   NN  +      + NL+ +  L    
Sbjct: 310 TY-----LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 413 NMITGKIPVEIGKLQTLSAIYLYDN 437
           N I+   P  +  L  ++ + L D 
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 98.2 bits (243), Expect = 2e-22
 Identities = 74/402 (18%), Positives = 133/402 (33%), Gaps = 34/402 (8%)

Query: 347 FPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLE 406
           F    L      +  L   +    +  S   L+++T L  +           +  L+ L 
Sbjct: 16  FTDTALA--EKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLT 69

Query: 407 NLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGS 466
            +   +N +T   P  +  L  L  I + +NQ++   P           +          
Sbjct: 70  QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 467 IPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELY 526
           +       +     +L  N +S     S     +          L     LT     ++ 
Sbjct: 128 LKNLTNLNRL----ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 527 LITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPI 586
              + + S          +L  L  +  ++N+ S    PL    +L  L L  N      
Sbjct: 184 SNKVSDISVL-------AKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKD-- 233

Query: 587 PSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAH 646
              LA   NL+ L LA+N ++   P     LT+L  L L  N  +               
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 647 LLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKI 706
                NE        + +L+ +  L L  NN +   P  + + +KL +L    N +S   
Sbjct: 292 ----LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-- 343

Query: 707 PPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSEN 748
              + NLT +N L+   N +S   P  +    ++ +L L++ 
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.8 bits (229), Expect = 1e-20
 Identities = 86/396 (21%), Positives = 148/396 (37%), Gaps = 33/396 (8%)

Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
           LA+  +  L K N++ ++S   T L  + TL            +++    ++L Q+  + 
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSIDGVEYL---NNLTQINFSN 75

Query: 341 NKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG 400
           N+L+   PL+    + L  + +++N      P +            N    T        
Sbjct: 76  NQLTDITPLK--NLTKLVDILMNNNQIADITPLANLT---------NLTGLTLFNNQITD 124

Query: 401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFG 460
                    L    ++     +I  L  L+++         +  + L N + L  +D   
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 461 NHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFR 520
           N  S      + KL NL  L    N +S   P        L +++L  N+L      T  
Sbjct: 185 NKVS--DISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLA 238

Query: 521 FLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNN 580
            L+ L  + L NN      P  L  L KL  +    N+ S  I PL G  +LT L+L  N
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNEN 295

Query: 581 SFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSK 640
                 P      +NL+ L L  N+++   P     LT+L  L  + N  +      L+ 
Sbjct: 296 QLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLAN 349

Query: 641 CAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN 676
              +  L   +N+++   P  L +L  I +L L+  
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.4 bits (228), Expect = 2e-20
 Identities = 85/396 (21%), Positives = 137/396 (34%), Gaps = 33/396 (8%)

Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
           L       L    ++ ++    T+   +T +         SI + +  L NL  +    N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNN 76

Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQ 545
            L+   P  L    +L  I + +N+++   PL          +     +   PL      
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 546 LKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNH 605
            +     N   +  + S        S           +     E              + 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD----------ISS 184

Query: 606 LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSL 665
              +  S   KLT L  L  + N  +      +     L  L L+ N+L       L SL
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASL 240

Query: 666 QEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNS 725
             + +LDL++N  +   P  +   +KL +L L  N +S   P  +  LTAL  L L  N 
Sbjct: 241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 296

Query: 726 LSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGS 785
                 S I   K L  L L  N  +   P  +  LT+LQ  L  + N  S     SL +
Sbjct: 297 --LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR-LFFANNKVSD--VSSLAN 349

Query: 786 LLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
           L  +  L+  +NQ+    P  L  LT +  L L++ 
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.0 bits (227), Expect = 2e-20
 Identities = 77/384 (20%), Positives = 123/384 (32%), Gaps = 33/384 (8%)

Query: 257 LFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316
           L       L        +      L Q+  L   +  +  SI  +   L NL  +  S+N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDGVE-YLNNLTQINFSNN 76

Query: 317 AFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLD 376
             T   P+K       +         ++    L  L   +L    ++D      L     
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 377 KLEELTDL------------LLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIG 424
                  +               +     +    + NL+ LE L +  N +       + 
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLA 194

Query: 425 KLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQ 484
           KL  L ++   +NQ+S   P      + L E+   GN        T+  L NL  L L  
Sbjct: 195 KLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 485 NDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF 544
           N +S   P  L    +L ++ L  N++S   PL               N  +      + 
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL----ELNENQLEDISPIS 304

Query: 545 QLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHN 604
            LK L  +    N  S    P++    L  L   NN  S    S LA   N++ L   HN
Sbjct: 305 NLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 605 HLTGNIPSEFGKLTELNFLDLSFN 628
            ++   P     LT +  L L+  
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.1 bits (222), Expect = 1e-19
 Identities = 60/207 (28%), Positives = 85/207 (41%), Gaps = 16/207 (7%)

Query: 111 GQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIA 170
            +L NL  L+  +N  S   P     L  L  L +  N L       + +LT L +L +A
Sbjct: 194 AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 171 YCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSI 230
             Q++   P  +  L  LT L L  N++S + P  + G   L     + N LE   P S 
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISN 305

Query: 231 VLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLS 290
             LK+L  L L  N++S   P  +S L  L+ L    N       S L  L  +  L   
Sbjct: 306 --LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 291 KNNLSGSISLLNTQLKNLETLVLSDNA 317
            N +S    L N  L  +  L L+D A
Sbjct: 360 HNQISDLTPLAN--LTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.4 bits (215), Expect = 8e-19
 Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 16/223 (7%)

Query: 46  NWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGL 105
                        ++      ++  L  +++ +S       L  T+L+ L L+ N L   
Sbjct: 177 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD- 233

Query: 106 IPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELR 165
               L  L NL  L L +N  S   P  +  L KL  L++G N +    P          
Sbjct: 234 -IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL 290

Query: 166 ELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGT 225
           E      +        I NLK+LT L L  N +S + P  +    +LQ+   +NN +   
Sbjct: 291 E----LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD- 343

Query: 226 IPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGN 268
             SS+  L ++  L+  +N +S   P  L++L  +  L L   
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 1e-18
 Identities = 72/360 (20%), Positives = 128/360 (35%), Gaps = 45/360 (12%)

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSG 561
           +++     K + +  ++   L ++  +       K      +  L  L  INFS+N+ + 
Sbjct: 23  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD 80

Query: 562 SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFG------ 615
              PL     L  + + NN  +   P     +     L          + +         
Sbjct: 81  IT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 616 ---KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHL----LLSNNELTGTIPFWLGSLQEI 668
               +++++ L    +        Q++    LA+L     L  +    +    L  L  +
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG 728
             L  ++N  +   P  I   + L +LSL GN L       + +LT L  L+L  N +S 
Sbjct: 200 ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQ-------------------VILD 769
             P  +    KL EL+L  N  +   P                               L 
Sbjct: 256 LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 770 LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPL 829
           L  NN S   P  + SL KL+RL  + N++     +SL  LT+++ L+  +N +    PL
Sbjct: 314 LYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 1e-18
 Identities = 80/393 (20%), Positives = 142/393 (36%), Gaps = 50/393 (12%)

Query: 137 LNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMN 196
           L +     +G   +   +     +L ++  L      +  SI   +  L +LT ++   N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN 76

Query: 197 KLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSH 256
           +L+ + P  +    +L     +NN +    P + +   +   L     +    +    + 
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 257 LFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDN 316
                  N + +I      +              +    G+       L NL TL   D 
Sbjct: 135 NRLELSSNTISDISALSGLTS------------LQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 317 AFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLD 376
           +      I      ++L+ LI   N++S   PL +   ++L +L L+ N  K     +L 
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLA 238

Query: 377 KLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPV--------------- 421
            L  LTDL L NN  +   P  +  L+KL  L L  N I+   P+               
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 422 -----EIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKN 476
                 I  L+ L+ + LY N +S   P  +++ + L  + F  N  S     ++  L N
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN 352

Query: 477 LVILQLRQNDLSGPIPASLGYCKRLQQIALADN 509
           +  L    N +S   P  L    R+ Q+ L D 
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 2e-16
 Identities = 74/407 (18%), Positives = 139/407 (34%), Gaps = 53/407 (13%)

Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
            L       L    ++  + +     +++    A    ++      +  L +L  +N +N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 75

Query: 244 NSLSGSIPVE-LSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLN 302
           N L+   P++ L+ L ++   N                   L    ++  +   +++ LN
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 303 TQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGE---------FPLELLR 353
               +  T+         +   +    N       LA                    L +
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 354 CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDN 413
            ++L+ L  ++N      P  +     L +L LN N         + +L+ L +L L +N
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 414 MITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGK 473
            I+   P  +  L  L+ + L  NQ+S   P  L   + LT ++   N         +  
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL--EDISPISN 305

Query: 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNN 533
           LKNL  L L  N++S   P  +    +LQ++  A+NK+S                     
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-------------------- 343

Query: 534 SFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNN 580
                   SL  L  +  ++  HN+ S    PL     +T L L + 
Sbjct: 344 ------VSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 42  GILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNS 101
           G+    +   +      ++   + K++  L L  + +S        +LT L+ L  ++N 
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK 340

Query: 102 LTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDN 148
           ++    S L  L N+  L    N  S   P  +  L ++  L + D 
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 9e-06
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 20/267 (7%)

Query: 594 RNLSRLRLAHNHLTGNIP-SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652
               +  L   ++T  +  ++  ++T L    L   S  G     +     L  +  SNN
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNN 76

Query: 653 ELTGTIPFW-LGSLQEIGE---------LDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNL 702
           +LT   P   L  L +I              +  N  G               +L   N 
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 703 SGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT 762
                  I +++AL+ L   +    GN  + ++    L  L   +          +    
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 763 ELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNH 822
                L  + N  S   P  + +   L+ L+++ NQL+     +L  LT+L  L+L+NN 
Sbjct: 197 TNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252

Query: 823 LQGQLPLTFSGFPLSSFLGNAKLCGPP 849
           +    PL+         LG  ++    
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNIS 279

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 688 NCSKLLKLSLRGNNLSGKIPP-EIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
             ++ +K  L   N++  +   ++  +T L    L   S+ G     ++    L ++  S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 747 ENFFTGSIPADLGRLTELQVI 767
            N  T   P  L  LT+L  I
Sbjct: 75  NNQLTDITP--LKNLTKLVDI 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.2 bits (243), Expect = 6e-23
 Identities = 73/316 (23%), Positives = 108/316 (34%), Gaps = 27/316 (8%)

Query: 54  CSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQL 113
           C    V CSD     V  +L                     LDL +N +T +   +   L
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNL 54

Query: 114 QNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQ 173
           +NL  L+L +N  S   P     L KL+ L +  N L          L ELR       +
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK 114

Query: 174 LNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLL 233
           +  S+   +  +  +  L     K SG+   A  G ++L     ++  +  TIP    L 
Sbjct: 115 VRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LP 170

Query: 234 KSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN 293
            SL  L+L  N ++      L  L NL  L L  N         L     L EL L+ N 
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 294 LSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFC-----LNNSSLQQLILARNKLS-GEF 347
           L           K ++ + L +N  +      FC        +S   + L  N +   E 
Sbjct: 231 LVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 348 PLELLRC-SSLQQLDL 362
                RC      + L
Sbjct: 290 QPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.1 bits (222), Expect = 4e-20
 Identities = 59/279 (21%), Positives = 97/279 (34%), Gaps = 12/279 (4%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNM 414
                LDL +N            L+ L  L+L NN  +   P     L KLE L+L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 415 ITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKL 474
           +          LQ L        ++  S+   L     + E+       SG        +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGM 149

Query: 475 KNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNS 534
           K L  +++   +++  IP  L     L ++ L  NK++     + + L+ L  + L  NS
Sbjct: 150 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 535 FKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSG------PIPS 588
                  SL     LR ++ ++NK       L     +  + L NN+ S         P 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 589 ELAMSRNLSRLRLAHNHLTGN--IPSEFGKLTELNFLDL 625
                 + S + L  N +      PS F  +     + L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 1e-17
 Identities = 63/288 (21%), Positives = 106/288 (36%), Gaps = 14/288 (4%)

Query: 466 SIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSEL 525
            +P+ +    +  +L L+ N ++          K L  + L +NK+S   P  F  L +L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 526 YLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGP 585
             + L  N  K         L++LR+      K   S++       +  L       SG 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 586 IPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLA 645
                   + LS +R+A  ++T         LTE   L L  N  T   A  L     LA
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLA 198

Query: 646 HLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSG- 704
            L LS N ++      L +   + EL L++N     VP  + +   +  + L  NN+S  
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Query: 705 -----KIPPEIGNLTALNVLNLQRNSLSGN--IPSTIQQCKKLYELRL 745
                  P       + + ++L  N +      PST +       ++L
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 4e-17
 Identities = 54/279 (19%), Positives = 95/279 (34%), Gaps = 15/279 (5%)

Query: 549 LRIINFSHNKFSGSIYP-LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLT 607
             +++  +NK +           +L  L L NN  S   P   A    L RL L+ N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 608 GNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQE 667
                    L EL   +         +   L++   +  L  +  + +G        +++
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKK 151

Query: 668 IGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLS 727
           +  + ++  N         G    L +L L GN ++      +  L  L  L L  NS+S
Sbjct: 152 LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 728 GNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG------EIPP 781
                ++     L EL L+ N     +P  L     +QV + L  NN S         P 
Sbjct: 209 AVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQV-VYLHNNNISAIGSNDFCPPG 266

Query: 782 SLGSLLKLERLNISYNQLQGQ--VPASLGKLTSLHVLNL 818
                     +++  N +Q     P++   +     + L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 8e-15
 Identities = 59/279 (21%), Positives = 94/279 (33%), Gaps = 32/279 (11%)

Query: 561 GSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTEL 620
           G + P      L  +  ++      +P +L    + + L L +N +T     +F  L  L
Sbjct: 1   GPVCPFRCQCHLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNL 57

Query: 621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNG 680
           + L L  N  +       +   KL  L LS N+L         +LQE   L +  N    
Sbjct: 58  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE---LRVHENEITK 114

Query: 681 TVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKL 740
              +     ++++ + L  N L                        SG      Q  KKL
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLK----------------------SSGIENGAFQGMKKL 152

Query: 741 YELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ 800
             +R+++   T         LTEL     L  N  +     SL  L  L +L +S+N + 
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTEL----HLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 801 GQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSF 839
                SL     L  L+L+NN L            +   
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 2e-14
 Identities = 66/282 (23%), Positives = 105/282 (37%), Gaps = 17/282 (6%)

Query: 306 KNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDN 365
            +   L L +N  T      F  N  +L  LIL  NK+S   P        L++L LS N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 366 SFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGK 425
             K ELP  + K  +   +  N  +          N   +  L       +G        
Sbjct: 90  QLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 426 LQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQN 485
           ++ LS I + D  ++ +IP+ L     LTE+   GN  +     ++  L NL  L L  N
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 486 DLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLF- 544
            +S     SL     L+++ L +NKL   VP        + ++ L+NN+    +  + F 
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFC 263

Query: 545 ------QLKKLRIINFSHNKFS-GSIYPLT--GSNSLTALDL 577
                 +      ++   N      I P T        A+ L
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 5e-13
 Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 5/171 (2%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
            LDL +N        +  N   L  L L  N +S   P     L  L  L L +N L   
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 730 IPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKL 789
                +  ++L            S+   L ++  ++  L  +    SG    +   + KL
Sbjct: 95  PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE--LGTNPLKSSGIENGAFQGMKKL 152

Query: 790 ERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFPLSSFL 840
             + I+   +   +P  L    SL  L+L  N +      +  G    + L
Sbjct: 153 SYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (240), Expect = 1e-22
 Identities = 64/287 (22%), Positives = 96/287 (33%), Gaps = 11/287 (3%)

Query: 60  TCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRIL 119
            C ++ K     +    GL  ++        + + + L  N ++ +  +     +NL IL
Sbjct: 7   VCYNEPKVTT--SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 120 LLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEI-PPHIGNLTELRELAIAYCQLNGSI 178
            L+SN  +         L  L+ L + DN     + P     L  L  L +  C L    
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 179 PVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQI 238
           P     L  L  L LQ N L  L  +       L       N +      +   L SL  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 239 LNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
           L L  N ++   P     L  L  L L  N         L  L  L+ L L+ N      
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 299 SLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSG 345
                    L+    S +    S+P +  L    L++  LA N L G
Sbjct: 242 RARP-LWAWLQKFRGSSSEVPCSLPQR--LAGRDLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (204), Expect = 4e-18
 Identities = 61/262 (23%), Positives = 93/262 (35%), Gaps = 6/262 (2%)

Query: 565 PLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLD 624
           P+    +   + L  N  S    +     RNL+ L L  N L     + F  L  L  LD
Sbjct: 27  PVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 625 LSFNSFTGQIAP-QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVP 683
           LS N+    + P       +L  L L    L    P     L  +  L L  N       
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 684 AEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYEL 743
               +   L  L L GN +S         L +L+ L L +N ++   P   +   +L  L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 744 RLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQV 803
            L  N  +      L  L  LQ  L L+ N +  +   +      L++   S +++   +
Sbjct: 207 YLFANNLSALPTEALAPLRALQY-LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSL 264

Query: 804 PASLGKLTSLHVLNLSNNHLQG 825
           P  L       +  L+ N LQG
Sbjct: 265 PQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (204), Expect = 6e-18
 Identities = 54/255 (21%), Positives = 88/255 (34%), Gaps = 4/255 (1%)

Query: 355 SSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNM 414
           ++ Q++ L  N        S      LT L L++N            L+ LE L L DN 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 415 ITGKI-PVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGK 473
               + P     L  L  ++L    +    P      + L  +    N       +T   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 474 LKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNN 533
           L NL  L L  N +S     +      L ++ L  N+++   P  FR L  L  + L+ N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 534 SFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS 593
           +       +L  L+ L+ +  + N +            L     +++     +P  L   
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL--- 268

Query: 594 RNLSRLRLAHNHLTG 608
                 RLA N L G
Sbjct: 269 AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 3e-17
 Identities = 53/265 (20%), Positives = 90/265 (33%), Gaps = 6/265 (2%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
            +P  +      + + L  N +S   +      +NL  L L  N         F      
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT 392
            Q  +    +L    P        L  L L     +   P     L  L  L L +N+  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 393 GSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG 452
                   +L  L +LFL  N I+         L +L  + L+ N+++   P    +   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLS 512
           L  +  F N+ S    E +  L+ L  L+L  N        +      LQ+   + +++ 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVP 261

Query: 513 GSVPLTFRFLSELYLITLYNNSFKG 537
            S+P   + L+   L  L  N  +G
Sbjct: 262 CSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 6e-17
 Identities = 55/264 (20%), Positives = 82/264 (31%), Gaps = 8/264 (3%)

Query: 491 IPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLR 550
           +P  +      Q+I L  N++S     +FR    L ++ L++N        +   L  L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 551 IINFSHNKFSGSIYP--LTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTG 608
            ++ S N    S+ P    G   L  L L         P        L  L L  N L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 609 NIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEI 668
                F  L  L  L L  N  +            L  LLL  N +    P     L  +
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 669 GELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG 728
             L L +NN +      +     L  L L  N               L       + +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPC 262

Query: 729 NIPSTIQQCKKLYELRLSENFFTG 752
           ++P  +   + L   RL+ N   G
Sbjct: 263 SLPQRLAG-RDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 39/167 (23%), Positives = 55/167 (32%), Gaps = 5/167 (2%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN 729
                       VP  I   S+  ++ L GN +S            L +L L  N L+  
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 730 IPSTIQQCKKLYELRLSENFFTGSI-PADLGRLTELQVILDLSKNNFSGEIPPSLGSLLK 788
             +       L +L LS+N    S+ PA    L  L   L L +       P     L  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT-LHLDRCGLQELGPGLFRGLAA 130

Query: 789 LERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPLTFSGFP 835
           L+ L +  N LQ     +   L +L  L L  N +       F G  
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 5e-13
 Identities = 48/212 (22%), Positives = 75/212 (35%), Gaps = 8/212 (3%)

Query: 60  TCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRIL 119
             S    H+  +N     L+ ++  D         L LS N L     + L     L  L
Sbjct: 5   EVSKVASHLE-VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 120 LLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIP 179
            L  +          G L  L       +     +P     L  L  L +++ +L     
Sbjct: 61  NL--DRAELTKLQVDGTLPVLG-TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 180 VEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQIL 239
             +  L  L  L L+ N+L  L P  +    +L+K + +NN L       +  L++L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 240 NLANNSLSGSIPVELSHLFNLRYLNLLGNIFD 271
            L  NSL  +IP        L +  L GN + 
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 50/214 (23%), Positives = 79/214 (36%), Gaps = 7/214 (3%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
            + S   ++    +LT  +P +L +  +  IL L  N         +    +L  L +  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
             L        G L  L  L +++ QL     +           D+  N+L+ L   A+ 
Sbjct: 65  AELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALR 121

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
           G  ELQ+     N L+   P  +     L+ L+LANN+L+      L+ L NL  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 268 NIFDGEIPSELNKLAQLEELDLSKNNLSGSISLL 301
           N     IP        L    L  N    +  +L
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 8/205 (3%)

Query: 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSF 630
           S   ++    + +  +P +L   ++ + L L+ N L     +     T L  L+L     
Sbjct: 11  SHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 631 TGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCS 690
           T            +   L  ++    ++P    +L  +  LD+S N         +    
Sbjct: 68  TKLQVDG---TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 691 KLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFF 750
           +L +L L+GN L    P  +     L  L+L  N+L+      +   + L  L L EN  
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 751 TGSIPADLGRLTELQVILDLSKNNF 775
             +IP        L     L  N +
Sbjct: 185 Y-TIPKGFFGSHLLPF-AFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 8e-09
 Identities = 45/213 (21%), Positives = 74/213 (34%), Gaps = 7/213 (3%)

Query: 323 PIKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELT 382
           PI      +S  ++   +  L+   P +L +      L LS+N        +L     LT
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 383 DLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGS 442
            L L+    T       G L  L  L L  N +     +       L+ + +  N+++  
Sbjct: 59  QLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSL 115

Query: 443 IPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQ 502
               L     L E+   GN      P  +     L  L L  N+L+      L   + L 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 503 QIALADNKLSGSVPLTFRFLSELYLITLYNNSF 535
            + L +N L  ++P  F     L    L+ N +
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 6/209 (2%)

Query: 374 SLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIY 433
            + K+    ++  +  + T + PP++        L L +N++       +     L+ + 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 434 LYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPA 493
           L   ++      ++     +       ++   S+P     L  L +L +  N L+     
Sbjct: 62  LDRAEL---TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 494 SLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIIN 553
           +L     LQ++ L  N+L    P       +L  ++L NN+        L  L+ L  + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 554 FSHNKFSGSIYPLTGSNSLTALDLTNNSF 582
              N          GS+ L    L  N +
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 49/206 (23%), Positives = 69/206 (33%), Gaps = 6/206 (2%)

Query: 545 QLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHN 604
           ++     +N      + ++ P       T L L+ N       + L     L++L L   
Sbjct: 8   KVASHLEVNCDKRNLT-AL-PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 605 HLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS 664
                     G L  L       ++    +         L  L +S N LT      L  
Sbjct: 66  E--LTKLQVDGTLPVL-GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 665 LQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724
           L E+ EL L  N      P  +    KL KLSL  NNL+      +  L  L+ L LQ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 725 SLSGNIPSTIQQCKKLYELRLSENFF 750
           SL   IP        L    L  N +
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 43/191 (22%), Positives = 62/191 (32%), Gaps = 7/191 (3%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
            +P +L K      L LS+N L             L  L L     T            +
Sbjct: 24  ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81

Query: 333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFT 392
           L         L            +L  LD+S N        +L  L EL +L L  N   
Sbjct: 82  LDLSHNQLQSLPLLGQ----TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 393 GSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG 452
              P  +    KLE L L +N +T      +  L+ L  + L +N +  +IP+       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 453 LTEIDFFGNHF 463
           L      GN +
Sbjct: 197 LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 53/216 (24%), Positives = 71/216 (32%), Gaps = 11/216 (5%)

Query: 639 SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLR 698
           SK A    +      LT  +P  L    +   L LS N       A +   ++L +L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL- 62

Query: 699 GNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL 758
            +          G L  L  L+L  N L                          S+P   
Sbjct: 63  -DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT--SLPLGA 119

Query: 759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNL 818
            R       L L  N      P  L    KLE+L+++ N L       L  L +L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 819 SNNHLQGQLPLTFSGFPLSSFL---GNAKLCGPPLL 851
             N L   +P  F G  L  F    GN  LC   +L
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERL 792
            + +     E+   +   T ++P DL + T    IL LS+N        +L    +L +L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 793 NISYNQ 798
           N+   +
Sbjct: 61  NLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 1/99 (1%)

Query: 28  FWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFL 87
             L  +    +   G L+    + +               +  L+L+++ L+   +    
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSF 126
            L +L+TL L  NSL   IP        L    L+ N +
Sbjct: 170 GLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 24/267 (8%)

Query: 573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTG 632
             LDLT  +    +   L +S+ +   R   + +   +   F     +  +DLS +    
Sbjct: 3   QTLDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 633 QIAPQ-LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSS--NNFNGTVPAEIGNC 689
                 LS+C+KL +L L    L+  I   L     +  L+LS         +   + +C
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 690 SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENF 749
           S+L +L+L       +   ++                   +    +   +L      +N 
Sbjct: 121 SRLDELNLSWCFDFTEKHVQV------------------AVAHVSETITQLNLSGYRKNL 162

Query: 750 FTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISY-NQLQGQVPASLG 808
               +   + R   L  +          +       L  L+ L++S    +  +    LG
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222

Query: 809 KLTSLHVLNLSNNHLQGQLPLTFSGFP 835
           ++ +L  L +      G L L     P
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQLLKEALP 249

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 37/245 (15%), Positives = 85/245 (34%), Gaps = 15/245 (6%)

Query: 65  QKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTG-LIPSELGQLQNLRILLLYS 123
            + V+      S +   +  +  +   ++ +DLS++ +    +   L Q   L+ L L  
Sbjct: 22  SQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 124 NSFSGKIPPEIGFLNKLQVL--RIGDNLLWGEIPPHIGNLTELRELAIAYCQLNG----- 176
              S  I   +   + L  L            +   + + + L EL +++C         
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 177 -SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNML-EGTIPSSIVLLK 234
            ++      +  L     + N     +   +  C  L     S++++ +         L 
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 235 SLQILNLAN-NSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNN 293
            LQ L+L+    +     +EL  +  L+ L + G + DG +         L  L ++ ++
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE---ALPHLQINCSH 257

Query: 294 LSGSI 298
            +   
Sbjct: 258 FTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 41/269 (15%), Positives = 86/269 (31%), Gaps = 16/269 (5%)

Query: 528 ITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSG-PI 586
           + L   +    +   L     +       +     +        +  +DL+N+      +
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 587 PSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQ--------L 638
              L+    L  L L    L+  I +   K + L  L+LS  S   + A Q        L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 639 SKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLR 698
            +         +   +   +     ++ ++       N     +   +  C  L+ L L 
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 699 GN-NLSGKIPPEIGNLTALNVLNLQR-NSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA 756
            +  L      E   L  L  L+L R   +       + +   L  L++      G++  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 757 DLGRLTELQVILDLSKNNFSGEIPPSLGS 785
               L  LQ+    + ++F+    P++G+
Sbjct: 244 LKEALPHLQI----NCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 42/280 (15%), Positives = 92/280 (32%), Gaps = 17/280 (6%)

Query: 454 TEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSG 513
             +D  G +    +   +     ++  +  ++ +  P+        R+Q + L+++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 514 -SVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL 572
            ++       S+L  ++L       P+  +L +   L  +N S           T  +S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 573 TALDLTNNS---------FSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFL 623
           + LD  N S             +         L+      N    ++ +   +   L  L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 624 DLSFN-SFTGQIAPQLSKCAKLAHLLLSN-NELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
           DLS +         +  +   L HL LS   ++       LG +  +  L +     +GT
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL 721
           +         L    +  ++ +    P IGN     +  +
Sbjct: 241 LQLLKEALPHL---QINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 7e-10
 Identities = 40/274 (14%), Positives = 85/274 (31%), Gaps = 40/274 (14%)

Query: 94  TLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGE 153
           TLDL+  +L   +   L  L    I      SF  +   E     ++Q + + ++++   
Sbjct: 4   TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 154 -IPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQM--NKLSGLIPEAIHGCE 210
            +   +   ++L+ L++   +L+  I   +    +L  L+L          +   +  C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 211 ELQKF-------------------------------AASNNMLEGTIPSSIVLLKSLQIL 239
            L +                                   N                + + 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 240 NLANNSLSGSIPVELSHLFNLRYLNLLG-NIFDGEIPSELNKLAQLEELDLSKNNLSGSI 298
              +  L      E   L  L++L+L        E   EL ++  L+ L +      G++
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 299 SLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
            LL   L +L+   ++ + FT           + 
Sbjct: 242 QLLKEALPHLQ---INCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 56/276 (20%), Positives = 96/276 (34%), Gaps = 15/276 (5%)

Query: 141 QVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSG 200
           Q L +    L  ++   + +   +         ++  +       + +  +DL  + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 201 -LIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN--NSLSGSIPVELSHL 257
             +   +  C +LQ  +     L   I +++    +L  LNL+        ++   LS  
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 258 FNLRYLNL------LGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETL 311
             L  LNL              +      + QL      KN     +S L  +  NL  L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 312 VLSDNAFTGSIPIKFCLNNSSLQQLILAR-NKLSGEFPLELLRCSSLQQLDLSDNSFKGE 370
            LSD+    +   +     + LQ L L+R   +  E  LEL    +L+ L +      G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 371 LPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLE 406
           L       E L  L +N + FT    P IGN    E
Sbjct: 241 LQLL---KEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 45/303 (14%), Positives = 79/303 (26%), Gaps = 43/303 (14%)

Query: 358 QQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITG 417
           Q LDL+  +   ++   L  L +         SF      E  +  +++++ L +++I  
Sbjct: 3   QTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 418 KIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNL 477
                                   ++   L+ CS L  +   G   S  I  T+ K  NL
Sbjct: 61  S-----------------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97

Query: 478 VILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKG 537
           V L L                   +              L    LS  +  T  +     
Sbjct: 98  VRLNLSGCSGFSEFALQTLLSSCSR--------------LDELNLSWCFDFTEKHVQVAV 143

Query: 538 PLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLS 597
                      L     +  K   S       N +      +         E      L 
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 598 RLRLAH-NHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG 656
            L L+    +      E G++  L  L +      G +           HL ++ +  T 
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL---PHLQINCSHFTT 260

Query: 657 TIP 659
              
Sbjct: 261 IAR 263

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 8/188 (4%)

Query: 91  SLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEI-GFLNKLQVLRIGDNL 149
              T+D +   L   IP ++    +   LLL  N         + G L  L  L +  N 
Sbjct: 9   EGTTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 150 LWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGC 209
           L G  P      + ++EL +   ++          L  L +L+L  N++S ++P +    
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 210 EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNI 269
             L     ++N        +    + L+  +L   +     P   S + +++  +L  + 
Sbjct: 126 NSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSE 181

Query: 270 FDGEIPSE 277
           F     + 
Sbjct: 182 FKCSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 6/157 (3%)

Query: 644 LAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLS 703
              LLL++NEL       L              N    +       +  ++    G N  
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 704 GKIPPE-IGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLT 762
            +I  +    L  L  LNL  N +S  +P + +    L  L L+ N F  +    L    
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH--LAWFA 148

Query: 763 ELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQL 799
           E      L+        P  +     ++  ++ +++ 
Sbjct: 149 EWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 7/187 (3%)

Query: 286 ELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSG 345
            +D +   L      +     +   L+L+DN                L +L L RN+L+G
Sbjct: 12  TVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 346 EFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKL 405
             P      S +Q+L L +N  K    +    L +L  L L +N  +   P    +L+ L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 406 ENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSG 465
            +L L  N       +     + L    L         P ++     +   D   + F  
Sbjct: 129 TSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKC 184

Query: 466 SIPETMG 472
           S   + G
Sbjct: 185 SSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 1/139 (0%)

Query: 26  DSFWLLRIKQELVDPTGILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRD 85
           D+         L      L     + +  +       +   H+  L L  + +    ++ 
Sbjct: 38  DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97

Query: 86  FLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRI 145
           FL L  L+TL+L  N ++ ++P     L +L  L L SN F+        F   L+   +
Sbjct: 98  FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLAWFAEWLRKKSL 156

Query: 146 GDNLLWGEIPPHIGNLTEL 164
                    P  + ++   
Sbjct: 157 NGGAARCGAPSKVRDVQIK 175

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 22/214 (10%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
            + + +    S ++ +++    +L  + TL      +T +    +  L NL  L L  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            +   P +         L          I       T              +    +  L
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 186 KHLTSLDLQMNKL--------------SGLIPEAIHGCEELQKFAASNNMLEGTIPSSIV 231
               +    ++ L                     +    +L    A +N +    P  + 
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 232 LLKSLQILNLANNSLSGSIPVELSHLFNLRYLNL 265
            L +L  ++L NN +S   P  L++  NL  + L
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 18/228 (7%)

Query: 88  NLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGD 147
            L +   +    +++T  +      L  +  L  +    +      + +LN L  L + D
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 148 NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIH 207
           N +       + NLT                   + N+  +  L                
Sbjct: 73  NQIT--DLAPLKNLT--------KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 208 GCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLG 267
                        +    I +   L     +  L+  +   S    L++L  L  L    
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 268 NIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSD 315
           N      P  L  L  L E+ L  N +S    L N    NL  + L++
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSPLAN--TSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 7e-07
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 281 LAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILAR 340
           LA   ++   K+N++ +++     L  + TL       T    +++    ++L  L L  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEGVQYL---NNLIGLELKD 72

Query: 341 NKLSGEFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIG 400
           N+++   PL+ L   +  +L  +       +                 +    +    + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 401 NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFG 460
            L    N     + + G   +           YL       S    L N S LT +    
Sbjct: 133 VLYLDLNQITNISPLAGLTNL----------QYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 461 NHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALAD 508
           N  S   P  +  L NL+ + L+ N +S   P  L     L  + L +
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 38/233 (16%), Positives = 73/233 (31%), Gaps = 19/233 (8%)

Query: 347 FPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLE 406
           FP   L   +  ++    ++    +  +   L+ +T L       T      +  L+ L 
Sbjct: 13  FPDPALA--NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLI 66

Query: 407 NLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGS 466
            L L DN IT   P++     T   +     +   +I    +  +         +    +
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 467 IPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELY 526
               +  L   +      + L+G            Q           S       LS+L 
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV----------SDLTPLANLSKLT 176

Query: 527 LITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTN 579
            +   +N         L  L  L  ++  +N+ S    PL  +++L  + LTN
Sbjct: 177 TLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 17/225 (7%)

Query: 522 LSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNS 581
           L+    I    ++    +  +   L  +  ++      + +I  +   N+L  L+L +N 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQ 74

Query: 582 FSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKC 641
            +   P +         L          I          +   L   S        L+  
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ------SIKTLDLTSTQITDVTPLAGL 128

Query: 642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701
           + L  L L  N++T   P    +  +      S  N   +    + N SKL  L    N 
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYL----SIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 702 LSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
           +S   P  + +L  L  ++L+ N +S   P  +     L+ + L+
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 27/221 (12%)

Query: 160 NLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASN 219
            L    ++A     +  ++     +L  +T+L      ++ +  E +     L      +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 220 NMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLN--------------- 264
           N +    P   +   +   L+        +I    S                        
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 265 -LLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIP 323
            L  ++      S L  L  L+ L +    +S    L N     L TL   DN  +   P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS--KLTTLKADDNKISDISP 190

Query: 324 IKFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSD 364
           +    +  +L ++ L  N++S   PL     S+L  + L++
Sbjct: 191 LA---SLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 21/228 (9%)

Query: 594 RNLSRLRLAHNHLTGNIP-SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN 652
            N  ++    +++T  +  ++   +T L+       +  G     +     L  L L +N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDN 73

Query: 653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGN 712
           ++T   P    +     EL  +       +       +  L  +   +         +  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 713 LTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSK 772
           L          + L+G                        S    L  L++L   L    
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSI----------GNAQVSDLTPLANLSKLT-TLKADD 182

Query: 773 NNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN 820
           N  S   P  L SL  L  +++  NQ+    P  L   ++L ++ L+N
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 9e-05
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 19/226 (8%)

Query: 233 LKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKN 292
           L +   +    ++++ ++    + L  +  L+  G          +  L  L  L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 293 NLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELL 352
            ++         LKNL  +   + +      +       S++ L L   +++   PL  L
Sbjct: 74  QITD-----LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 353 RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFD 412
               +  LDL+  +    L    +          +  +   S    + NLSKL  L   D
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYL------SIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 413 NMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDF 458
           N I+   P  +  L  L  ++L +NQ+S   P  L N S L  +  
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 34/237 (14%), Positives = 63/237 (26%), Gaps = 20/237 (8%)

Query: 562 SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELN 621
            I+P     +   +    ++ +  +    A    ++ L      +T         L  L 
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLI 66

Query: 622 FLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGT 681
            L+L  N                    L+           L ++  I  L         +
Sbjct: 67  GLELKDNQI----------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116

Query: 682 VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLY 741
                      L           +I          N+  L   +   +  + +    KL 
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176

Query: 742 ELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ 798
            L+  +N  +   P  L  L  L   + L  N  S   P  L +   L  + ++ NQ
Sbjct: 177 TLKADDNKISDISP--LASLPNLIE-VHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 19/202 (9%)

Query: 642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701
           A    +    + +T T+      L  I  L              +   + L+ L L+ N 
Sbjct: 19  ANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 702 LSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRL 761
           ++   P +         L+         I                 +    +  ++L  L
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 762 TELQVILDL-------------SKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLG 808
                 +               S  N        L +L KL  L    N++    P  L 
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 809 KLTSLHVLNLSNNHLQGQLPLT 830
            L +L  ++L NN +    PL 
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLA 214

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 35/227 (15%), Positives = 60/227 (26%), Gaps = 18/227 (7%)

Query: 545 QLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHN 604
            L     I    +  + ++      + +T L       +      +    NL  L L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 605 HLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS 664
            +T   P +         L  +       IA   S            +         L  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 665 LQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724
           L        + +   G    +  +            N        + NL+ L  L    N
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSI----------GNAQVSDLTPLANLSKLTTLKADDN 183

Query: 725 SLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLS 771
            +S   P  +     L E+ L  N  +   P  L   + L  I+ L+
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF-IVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 46  NWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGL 105
                        +T   +   +  L    + +S        +L +L  + L +N ++ +
Sbjct: 153 LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210

Query: 106 IPSELGQLQNLRILLL 121
            P  L    NL I+ L
Sbjct: 211 SP--LANTSNLFIVTL 224

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.2 bits (123), Expect = 1e-07
 Identities = 39/310 (12%), Positives = 80/310 (25%), Gaps = 30/310 (9%)

Query: 544 FQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGP----IPSELAMSRNLSRL 599
            + K L++   +          L   +S+  + L+ N+        +   +A  ++L   
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 600 RLAHNH---LTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTG 656
             +      +   IP     L +        ++             +     LS +    
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 657 TIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716
            +      L       ++       V  +  N   L  +    N L      E       
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 717 NVLNLQRNSLSGNIPSTIQQCKKLYELR------------LSENFFTGSIPADLGRLTEL 764
           + L      +   I     +   L  L              +      S  A   +    
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 765 QVILDLSKNNFSGEIPPSLGSLL------KLERLNISYNQLQGQVPASL-----GKLTSL 813
              L L+    S     ++           L+ L + YN+++     +L      K+  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 814 HVLNLSNNHL 823
             L L+ N  
Sbjct: 305 LFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 43/340 (12%), Positives = 94/340 (27%), Gaps = 20/340 (5%)

Query: 62  SDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTG----LIPSELGQLQNLR 117
           S + K +    +++     S+    L   S++ + LS N++       +   +   ++L 
Sbjct: 4   SIEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 118 ILLLYSNS---FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQL 174
           I             +IP  +  L +  +     + +            E     ++    
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 175 NGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLK 234
              + +    L       +        + +       L+      N LE     S+    
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE---NGSMKEWA 179

Query: 235 SLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNL 294
                +   +++                L  L    + ++    +              L
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 295 SGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELL-- 352
               +L    L +     LS       +     L N  LQ L L  N++  +    L   
Sbjct: 240 KSWPNLRELGLNDCL---LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296

Query: 353 ---RCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNN 389
              +   L  L+L+ N F  E    +D++ E+        
Sbjct: 297 IDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 52/346 (15%), Positives = 105/346 (30%), Gaps = 35/346 (10%)

Query: 91  SLETLDLSSNSLTG----LIPSELGQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQV 142
           S+E   L  +++T      + + L +  +++ ++L  N+   +    +   I     L++
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 143 LRIGDNLLW---GEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLS 199
               D        EIP  +  L +          +  S        +      L  +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 200 GLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFN 259
             +    +G         +  + E  +         L+ +    N L      E +  F 
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 260 LRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFT 319
              L     +    I  E  +   LE L                +LK L+    +     
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAY------------CQELKVLDLQDNTFTHLG 231

Query: 320 GSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRC------SSLQQLDLSDNSFKGELPR 373
            S       +  +L++L L    LS      ++          LQ L L  N  + +  R
Sbjct: 232 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 291

Query: 374 SL-----DKLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNM 414
           +L     +K+ +L  L LN N F       +  + ++ +      +
Sbjct: 292 TLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 35/319 (10%), Positives = 84/319 (26%), Gaps = 17/319 (5%)

Query: 325 KFCLNNSSLQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKGE----LPRSLDKLEE 380
           +F +   SL+   +            LL   S++++ LS N+   E    L  ++   ++
Sbjct: 2   RFSIEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 381 LTDLLLNNNS---FTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDN 437
           L     ++          P  +  L +        + +           Q     +L  +
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 438 QMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGY 497
                +                      ++ +       L  +   +N L          
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

Query: 498 CKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN 557
             +  ++      +   +         L  +          L  + F       +  +  
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240

Query: 558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSE---- 613
            +            L+       + +         +  L  LRL +N +  +        
Sbjct: 241 SWPNLRELGLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 296

Query: 614 -FGKLTELNFLDLSFNSFT 631
              K+ +L FL+L+ N F+
Sbjct: 297 IDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 2e-04
 Identities = 46/339 (13%), Positives = 94/339 (27%), Gaps = 38/339 (11%)

Query: 352 LRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTG----SFPPEIGNLSKLEN 407
           +   SL+   ++    K  +   L + + + +++L+ N+            I +   LE 
Sbjct: 5   IEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 408 LFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSI 467
               D     ++  EI              +    + + L  C  L  +    N F  + 
Sbjct: 64  AEFSDIFTG-RVKDEI-------------PEALRLLLQALLKCPKLHTVRLSDNAFGPTA 109

Query: 468 PETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYL 527
            E +    +           +  +    G         LA NK + + P     +     
Sbjct: 110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 169

Query: 528 ITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFS---- 583
           +   +         S   L  ++++             L G      L + +   +    
Sbjct: 170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 229

Query: 584 ---GPIPSELAMSRNLSRLRLAHNHLTGNIPS------EFGKLTELNFLDLSFNSFTGQI 634
                +   L    NL  L L    L+    +         +   L  L L +N      
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 289

Query: 635 APQL-----SKCAKLAHLLLSNNELTGTIPFWLGSLQEI 668
              L      K   L  L L+ N  +      +  ++E+
Sbjct: 290 VRTLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 37/322 (11%), Positives = 74/322 (22%), Gaps = 21/322 (6%)

Query: 442 SIPRELTNCSGLTEIDFFGNHFSG----SIPETMGKLKNLVILQLRQNDLSGPIPASLGY 497
           S+   L     + EI   GN         + E +   K+L I +                
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 498 CKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHN 557
            + L Q  L   KL         F        +   S   PL         L     +  
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 558 KFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKL 617
             +     +           +       + +        +       H    + +     
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN 677
              + L              L           +      + P          EL L+   
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL-------RELGLNDCL 254

Query: 678 FNGTVPAEIGNC------SKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGN-- 729
            +    A + +         L  L L+ N +       +  +    + +L    L+GN  
Sbjct: 255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

Query: 730 --IPSTIQQCKKLYELRLSENF 749
                 + + ++++  R     
Sbjct: 315 SEEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 39/315 (12%), Positives = 80/315 (25%), Gaps = 18/315 (5%)

Query: 324 IKFCLNNSSLQQLILARNKLSGE----FPLELLRCSSLQQLDLSDNS---FKGELPRSLD 376
               L + S+++++L+ N +  E        +     L+  + SD      K E+P +L 
Sbjct: 24  FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 83

Query: 377 KLEELTDLLLNNNSFTGSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYD 436
            L +        ++   S         +    FL  +     + +    L   +   +  
Sbjct: 84  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 143

Query: 437 NQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLG 496
                ++ ++  N   L  I    N       +   K        L    +        G
Sbjct: 144 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEG 202

Query: 497 YCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSH 556
               L +      +L         F       +    + K         L    +     
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTF--THLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 557 NKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMS-----RNLSRLRLAHNHLT--GN 609
                  +    +  L  L L  N         L         +L  L L  N  +   +
Sbjct: 261 AAV-VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 319

Query: 610 IPSEFGKLTELNFLD 624
           +  E  ++       
Sbjct: 320 VVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 38/322 (11%), Positives = 77/322 (23%), Gaps = 30/322 (9%)

Query: 419 IPVEIGKLQTLSAIYLYDNQMSG----SIPRELTNCSGLTEIDFFGNH---FSGSIPETM 471
           +   + +  ++  I L  N +       +   + +   L   +F           IPE +
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 472 GKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLY 531
             L   ++   + + +     A     +      L+ +     + L    L       + 
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 532 NNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELA 591
               +  +         LR I    N+              +   L              
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 592 MSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSN 651
           +   L         L      +              +  +  +A  L     L  L L++
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTF----------THLGSSALAIALKSWPNLRELGLND 252

Query: 652 NELTGTIPFWLG------SLQEIGELDLSSNNFNGTVPAEI-----GNCSKLLKLSLRGN 700
             L+      +           +  L L  N         +          LL L L GN
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312

Query: 701 NLS--GKIPPEIGNLTALNVLN 720
             S    +  EI  + +     
Sbjct: 313 RFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 46  NWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISR-DFLNLTSLETLDLSSNSLTG 104
                + +        +  +  +    LS+ G +  +     L    L+TL L  N +  
Sbjct: 228 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 287

Query: 105 LIPSEL-----GQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNL 149
                L      ++ +L  L L  N F  +    +  + ++   R    L
Sbjct: 288 DAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGEL 336

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 284 LEELDLSKNNLSGS-ISLLNTQLKNLETLVLSDNAFTGSIPIKFC---LNNSSLQQLILA 339
           ++ LD+    LS +  + L   L+  + + L D   T +           N +L +L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 340 RNKLSGEFPLELLR-----CSSLQQLDLSDN 365
            N+L       +L+        +Q+L L + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 6e-07
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 5/98 (5%)

Query: 569 SNSLTALDLTNNSFSGPIPSELAMS-RNLSRLRLAHNHLTG----NIPSEFGKLTELNFL 623
           S  + +LD+     S    +EL    +    +RL    LT     +I S       L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 624 DLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFW 661
           +L  N         + +  +     +    L       
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 1e-06
 Identities = 51/453 (11%), Positives = 113/453 (24%), Gaps = 21/453 (4%)

Query: 330 NSSLQQLILARNKLSGEFPLELL-RCSSLQQLDLSDNSFKGE----LPRSLDKLEELTDL 384
           +  +Q L +   +LS     ELL      Q + L D          +  +L     L +L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 385 LLNNNSFTGSFPPEIG-----NLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQM 439
            L +N         +         K++ L L +  +TG     +             +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 440 SGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCK 499
              +            +D         +        +   L             ++    
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 500 RLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKF 559
             +       +     P     L         +N        +     +   +  +    
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 560 SGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTE 619
            G      G    ++   T   +   I ++                      +E G    
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 620 LNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN 679
               +          +  +  C+  A      + +     F L        L+ +     
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 680 GTVPAEIGNCSKLLKLSLRGNNLSGK----IPPEIGNLTALNVLNLQRNSLSGNIPSTI- 734
                + G+  ++L L+    ++S      +   +    +L  L+L  N L       + 
Sbjct: 361 CQGLGQPGSVLRVLWLA--DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 735 ----QQCKKLYELRLSENFFTGSIPADLGRLTE 763
               Q    L +L L + +++  +   L  L +
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 712 NLTALNVLNLQRNSLSGN----IPSTIQQCKKLYELRLSENFFTGSIPADLGR-----LT 762
             + L VL L    +S +    + +T+     L EL LS N    +    L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 763 ELQVILDLSKNNFSGEIPPSLGSLLK 788
            L+  L L    +S E+   L +L K
Sbjct: 427 LLEQ-LVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 306 KNLETLVLSDNAFTGSIPIKFC---LNNSSLQQLILARNKLSGEFPLELLR-----CSSL 357
             L  L L+D   + S         L N SL++L L+ N L     L+L+         L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 358 QQLDLSDNSFKGELPRSLDKLEE 380
           +QL L D  +  E+   L  LE+
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 235 SLQILNLANNSLSGSIPVEL-SHLFNLRYLNLLGNIFDGE----IPSELNKLAQLEELDL 289
            +Q L++    LS +   EL   L   + + L            I S L     L EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 290 SKNNLSGS-----ISLLNTQLKNLETLVLSDN 316
             N L        +  L T    ++ L L + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 7e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 768 LDLSKNNFSGEIPPSLGSLLK-LERLNISYNQLQGQ----VPASLGKLTSLHVLNLSNNH 822
           LD+     S      L  LL+  + + +    L       + ++L    +L  LNL +N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 823 LQGQ 826
           L   
Sbjct: 67  LGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 9/129 (6%)

Query: 46  NWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGL 105
             +  +H  S         +  +    L  +G+           + L  L L+   ++  
Sbjct: 325 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 384

Query: 106 ----IPSELGQLQNLRILLLYSNSFSGKIPPEIG-----FLNKLQVLRIGDNLLWGEIPP 156
               + + L    +LR L L +N        ++          L+ L + D     E+  
Sbjct: 385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

Query: 157 HIGNLTELR 165
            +  L + +
Sbjct: 445 RLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 1e-05
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 729 NIPSTIQQCKKLYELRLSENFFTG----SIPADLGRLTELQVILDLSKNNFSGEIPPSLG 784
                 Q    L  L L++   +     S+ A L     L+  LDLS N         L 
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE-LDLSNNCLGDAGILQLV 418

Query: 785 SLLK-----LERLNISYNQLQGQVPASLGKL 810
             ++     LE+L +       ++   L  L
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 767 ILDLSKNNFSGEIPPSLGSLLK----LERLNISYNQLQGQVPASLGK-----LTSLHVLN 817
           +L L+  + S     SL + L     L  L++S N L       L +        L  L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 818 LSNNHLQGQLP 828
           L + +   ++ 
Sbjct: 433 LYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-05
 Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 307 NLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGE----FPLELLRCSSLQQLDL 362
           ++++L +     + +   +        Q + L    L+          L    +L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 363 SDNSFKGELPRSL 375
             N         +
Sbjct: 63  RSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-05
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 670 ELDLSSNNFNGTVPAEIG----NCSKLLKLSLRGNNLSGKIPPEIG-----NLTALNVLN 720
            L L+  + + +  + +         L +L L  N L      ++          L  L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 721 LQRNSLSGNIPSTIQQCKKLY 741
           L     S  +   +Q  +K  
Sbjct: 433 LYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-05
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 234 KSLQILNLANNSLSG----SIPVELSHLFNLRYLNLLGNIFDGEIPSEL-----NKLAQL 284
             L++L LA+  +S     S+   L    +LR L+L  N        +L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 285 EELDLSKNNLSGSI-SLLNTQLKNLETL-VLS 314
           E+L L     S  +   L    K+  +L V+S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 254 LSHLFNLRYLNLLGNIFDGE----IPSELNKLAQLEELDLSKNNLSGS-----ISLLNTQ 304
                 LR L L            + + L     L ELDLS N L  +     +  +   
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 305 LKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS 344
              LE LVL D  ++  +          LQ L   +  L 
Sbjct: 425 GCLLEQLVLYDIYWSEEME-------DRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 11/93 (11%)

Query: 740 LYELRLSENFFTGSIPADL-GRLTELQVILDLSKNNFSGEIPPSLGSLLK----LERLNI 794
           +  L +     + +  A+L   L + QV + L     +      + S L+    L  LN+
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQV-VRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 795 SYNQLQGQVPASLGKL-----TSLHVLNLSNNH 822
             N+L       + +        +  L+L N  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 5e-05
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 91  SLETLDLSSNSLTGLIPSEL-GQLQNLRILLLYSNSFSGK----IPPEIGFLNKLQVLRI 145
            +++LD+    L+    +EL   LQ  +++ L     +      I   +     L  L +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 146 GDNLLWGEIPPHIGNLTELRELAIAYCQLNG 176
             N L       +    +     I    L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 5e-05
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 637 QLSKCAKLAHLLLSNNELTGT----IPFWLGSLQEIGELDLSSNNFNGTVPAEIG----- 687
                + L  L L++ +++ +    +   L +   + ELDLS+N        ++      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 688 NCSKLLKLSLRGNNLSGKIPPEIGNLTALN 717
               L +L L     S ++   +  L    
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 8e-05
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 188 LTSLDLQMNKLSGL-IPEAIHGCEELQKFAASNNMLEG----TIPSSIVLLKSLQILNLA 242
           + SLD+Q  +LS     E +   ++ Q     +  L       I S++ +  +L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 243 NNSLSGSIPVELSHLF-----NLRYLNL 265
           +N L       +          ++ L+L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 9e-05
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 25/105 (23%)

Query: 184 NLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLAN 243
               L  L L    +S     ++                     ++++   SL+ L+L+N
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSL--------------------AATLLANHSLRELDLSN 406

Query: 244 NSLSGSIPVELSHLF-----NLRYLNLLGNIFDGEIPSELNKLAQ 283
           N L  +  ++L          L  L L    +  E+   L  L +
Sbjct: 407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 326 FCLNNSSLQQLILARNKLSGE----FPLELLRCSSLQQLDLSDNSFKGELPRSL-----D 376
                S L+ L LA   +S          LL   SL++LDLS+N         L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 377 KLEELTDLLLNNNSFTGSFPPEIGNLSK 404
               L  L+L +  ++      +  L K
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 71  LNLSSSGLSGSISRDFL-NLTSLETLDLSSNSLTG----LIPSELGQLQNLRILLLYSNS 125
           L++    LS +   + L  L   + + L    LT      I S L     L  L L SN 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPH 157
                   +    +    +I    L       
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 547 KKLRIINFSHNKFSGS-----IYPLTGSNSLTALDLTNNSFSGPIPSELA-----MSRNL 596
             LR++  +    S S        L  ++SL  LDL+NN        +L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 597 SRLRLAHNHLTGNIPSEFGKLTELN 621
            +L L   + +  +      L +  
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.003
 Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 401 NLSKLENLFLFDNMITGKIPVEIG----KLQTLSAIYLYDNQMSGSIPREL-----TNCS 451
             S L  L+L D  ++      +        +L  + L +N +  +   +L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 452 GLTEIDFFGNHFSGSIPETMGKLK----NLVIL 480
            L ++  +  ++S  + + +  L+    +L ++
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 16/200 (8%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
              +  NL    ++ +++++   L S++ +  +++ +  +    +  L N+  L L  N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            +            L  L+    L   E      +  +  +   +    +  I    G +
Sbjct: 80  LTDI--------KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
                  L +          +    +L   +  +N +   +P  +  L  LQ L L+ N 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189

Query: 246 LSGSIPVELSHLFNLRYLNL 265
           +S  +   L+ L NL  L L
Sbjct: 190 IS-DLR-ALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 38/194 (19%), Positives = 64/194 (32%), Gaps = 23/194 (11%)

Query: 642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701
           A+     L    +T  +      L  I ++  ++++        I     + KL L GN 
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79

Query: 702 LSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSI------- 754
           L+      + NL  L  L L  N +         +  K   L  +       +       
Sbjct: 80  LTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 755 --------PADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPAS 806
                     D+  L+ L  +  LS  +        L  L KL+ L +S N +      +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 807 LGKLTSLHVLNLSN 820
           L  L +L VL L +
Sbjct: 196 LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 37/202 (18%), Positives = 63/202 (31%), Gaps = 15/202 (7%)

Query: 545 QLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHN 604
              +    N      + ++      NS+  +   N+         +    N+++L L  N
Sbjct: 22  AFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 605 HLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGS 664
            LT   P     L  L +L L  N      + +  K  K       +  L       +  
Sbjct: 79  KLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLK-------SLSLEHNGISDING 129

Query: 665 LQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRN 724
           L  + +L+      N      + +    L      +N    I P +  LT L  L L +N
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 188

Query: 725 SLSGNIPSTIQQCKKLYELRLS 746
            +S      +   K L  L L 
Sbjct: 189 HISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 45/225 (20%), Positives = 78/225 (34%), Gaps = 24/225 (10%)

Query: 96  DLSSNSLTGLIPSELGQ------LQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNL 149
            L S ++T  +P+ + Q              L   S +  +      LN +  +   ++ 
Sbjct: 2   PLGSETIT--VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD 57

Query: 150 LWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGC 209
           +       I  L  + +L +   +L             L +L                  
Sbjct: 58  IKSVQG--IQYLPNVTKLFLNGNKLTDIK--------PLANLKNLGWLFLDENKVKDLSS 107

Query: 210 EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNI 269
            +  K   S ++    I     L+   Q+ +L   +   +    LS L  L  L+L  N 
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167

Query: 270 FDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLS 314
               +P  L  L +L+ L LSKN++S   +L    LKNL+ L L 
Sbjct: 168 ISDIVP--LAGLTKLQNLYLSKNHISDLRALAG--LKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 45/195 (23%)

Query: 279 NKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLIL 338
           +  A+  + +L K +++ +++    +L +++ ++ +++       I++  N   + +L L
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQYLPN---VTKLFL 75

Query: 339 ARNKLSGEFPLELLRCSSLQQLDL------------------SDNSFKGELPRSLDKLEE 380
             NKL+   PL  L+      LD                   S           L  L +
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 381 LTDLLLNNNSFTGSF--------------------PPEIGNLSKLENLFLFDNMITGKIP 420
           L  L L NN  T                          +  L+KL+NL+L  N I+    
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--L 193

Query: 421 VEIGKLQTLSAIYLY 435
             +  L+ L  + L+
Sbjct: 194 RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 85  DFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYS 123
               LT L+ L LS N ++ L    L  L+NL +L L+S
Sbjct: 173 PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 209

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 7e-07
 Identities = 27/251 (10%), Positives = 59/251 (23%), Gaps = 46/251 (18%)

Query: 54  CSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQL 113
           CS     C + +   +  +L                 +   L      L  +        
Sbjct: 8   CSNRVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGF 52

Query: 114 QNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLL----------------------- 150
            +L  + +  N     I  ++            +                          
Sbjct: 53  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 112

Query: 151 -----WGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEA 205
                  ++         L ++              +G       L L  N +  +   A
Sbjct: 113 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA 172

Query: 206 IHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNL 265
            +G +  +   + NN LE              IL+++   +       L +L  LR  + 
Sbjct: 173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

Query: 266 LGNIFDGEIPS 276
                  ++P+
Sbjct: 233 YNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 52  HMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELG 111
           +          +  +        ++ L    +  F   +    LD+S   +  L    L 
Sbjct: 163 NGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 222

Query: 112 QLQNLRILLLYSNSFSGKIPP 132
            L+ LR    Y+     K+P 
Sbjct: 223 NLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 9e-06
 Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 8/232 (3%)

Query: 571 SLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSF 630
           S        +  +  IPS+L   RN   LR     L       F    +L  +++S N  
Sbjct: 9   SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 631 TGQI----APQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEI 686
              I       L K  ++     +N        F      +   +  +       V    
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 687 GNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLS 746
                LL +    N  + +    +G      +L L +N +           +        
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 747 ENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQ 798
            N             +   + LD+S+          L +L KL   +    +
Sbjct: 186 NNNLEELPNDVFHGASGPVI-LDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 30/228 (13%), Positives = 55/228 (24%), Gaps = 7/228 (3%)

Query: 91  SLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLL 150
           S        + +T  IPS+L   +N   L                    L+ + I  N +
Sbjct: 9   SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 151 WGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLS----GLIPEAI 206
              I   + +              N                 L ++         + +  
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 207 HGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLL 266
              + L     + N+      S + L     IL L  N +        +           
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 267 GNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLS 314
            N  +       +  +    LD+S+  +    S     LK L      
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 34/230 (14%), Positives = 58/230 (25%), Gaps = 6/230 (2%)

Query: 595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNEL 654
           +        + +T  IPS+         L               S    L  + +S N++
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 655 TGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN--LSGKIPPEIGN 712
              I   + S              N          +      L  +N  +         +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 713 LTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSK 772
                +L++Q N     I            + L  N        +          L+LS 
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 773 NNFSGEIPP-SLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN 821
           NN   E+P            L+IS  ++       L  L  L   +  N 
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 40/234 (17%), Positives = 73/234 (31%), Gaps = 10/234 (4%)

Query: 169 IAYCQLNG--SIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTI 226
           +  CQ +    IP ++   ++   L   + KL  +   A  G  +L+K   S N +   I
Sbjct: 12  VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 227 PSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNI--FDGEIPSELNKLAQL 284
            + +              + +       +         LL +                Q 
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 285 EELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLS 344
             LD+  N    +I   +    + E+++L  N            N + L +L L+ N   
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 345 GEFPLELLR-CSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPP 397
            E P ++    S    LD+S           L+ L++L      N       P 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 31/217 (14%), Positives = 54/217 (24%), Gaps = 7/217 (3%)

Query: 442 SIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRL 501
            IP +L       E+ F                 +L  +++ QND+   I A +      
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 502 QQIALADNKLSGSVPLTFRFLSELYLITLYNN-----SFKGPLPPSLFQLKKLRIINFSH 556
                 +   +        F +   L  L  +                Q   L I +  +
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 557 NKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGK 616
                    +  S     L L  N            ++        +N+L       F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNE 653
            +    LD+S        +  L    KL      N +
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 7e-07
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 52  HMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELG 111
                           +       +  S  I        SLE L++S+N L   +P+   
Sbjct: 246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP 304

Query: 112 QLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELR 165
           +L+ L       N  + ++P        L+ L +  N L  E P    ++ +LR
Sbjct: 305 RLERLI---ASFNHLA-EVPELPQ---NLKQLHVEYNPL-REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 625 LSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPA 684
              N+ + +I         L  L +SNN+L   +P     L+    L  S N+    VP 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPE 321

Query: 685 EIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLN 720
              N   L +L +  N L  + P    ++  L + +
Sbjct: 322 LPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 45/344 (13%), Positives = 90/344 (26%), Gaps = 26/344 (7%)

Query: 349 LELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNSFTGSFPPEIGNLSKLENL 408
           L         +L+L++      LP     LE L     + NS T   P    +L  L   
Sbjct: 32  LRDCLDRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVD 86

Query: 409 FLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIP 468
                 ++   P             L    +S +   +L      + +       +    
Sbjct: 87  NNNLKALSDLPP------------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134

Query: 469 ETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLI 528
                     I          P   +L +   +     +  KL          ++   ++
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 529 TLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPS 588
                    P   +++    L            ++       +       + +F     +
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 589 ELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLL 648
             +    L       N  +  I S       L  L++S N    ++        +L  L+
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLI 310

Query: 649 LSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKL 692
            S N L   +P    +L+   +L +  N      P    +   L
Sbjct: 311 ASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 9e-06
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 218 SNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSE 277
             N     I S   L  SL+ LN++NN L   +P        L  L    N    E+P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHL-AEVPEL 322

Query: 278 LNKLAQLEELDLSKNNLSGSISLLNTQLKNL 308
                 L++L +  N L      +   +++L
Sbjct: 323 PQN---LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 63/332 (18%), Positives = 108/332 (32%), Gaps = 24/332 (7%)

Query: 232 LLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSK 291
           L +    L L N  LS S+P    HL     L    N    E+P     L  L   + + 
Sbjct: 36  LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNL 90

Query: 292 NNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLEL 351
             LS    LL     +   L         S      ++N+SL++L      L        
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 352 LRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNN--NSFTGSFPPEIGNLSKLENLF 409
                 +  +L   +       SL KL +L   L +    +      PE+ NL  L  ++
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 410 LFDNMITGKIPVEIGKLQTLSAIYLYDNQMSG--------SIPRELTNCSGLTEIDFFGN 461
             +N++     +               +                  +  S L    ++ N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 462 HFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRF 521
             S  I        +L  L +  N L   +PA      RL+++  + N L+  VP   + 
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHLA-EVPELPQN 325

Query: 522 LSELYLITLYNNSFKGPLPPSLFQLKKLRIIN 553
           L +L+   +  N  +   P     ++ LR+ +
Sbjct: 326 LKQLH---VEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 171 YCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSI 230
               +  I         L  L++  NKL  L          L++  AS N L   +P   
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLA-EVPE-- 321

Query: 231 VLLKSLQILNLANNSLSGSIPVELSHLFNLR 261
            L ++L+ L++  N L    P     + +LR
Sbjct: 322 -LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS 732
              N  +  + +       L +L++  N L  ++P     L     L    N L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPE 321

Query: 733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQV 766
             Q  K+L+   +  N      P     + +L++
Sbjct: 322 LPQNLKQLH---VEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 46/329 (13%), Positives = 85/329 (25%), Gaps = 26/329 (7%)

Query: 283 QLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIP------IKFCLNNSSLQQL 336
           Q  EL+L+   LS     L     +LE+LV S N+ T  +P          ++N++L+ L
Sbjct: 39  QAHELELNNLGLSS----LPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93

Query: 337 ILARNKLSGEFPLELLRCSSLQQLDL----SDNSFKGELPRSLDKLEELTDLLLNNNSFT 392
                 L              +  +       +     L +  D    L  +   NN   
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 393 GSFPPEIGNLSKLENLFLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSG 452
                +                    +P+ +  +   + I     ++             
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 453 LTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLSGPIPASLGYCKRLQQIALADNKLS 512
                      S             +    +                 L       N  S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 513 GSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSL 572
             +         L  + + NN     LP    +L++L     S N  +  +  L    +L
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLA-EVPELPQ--NL 326

Query: 573 TALDLTNNSFSGPIPSELAMSRNLSRLRL 601
             L +  N      P       ++  LR+
Sbjct: 327 KQLHVEYNPLRE-FPDIP---ESVEDLRM 351

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 599 LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI 658
           L LAH  LT  +     +L  +  LDLS N       P L+    L  L  S+N L    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD 59

Query: 659 PFWLGSLQEIGELDLSSNNFNGT-VPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL 716
                +L  + EL L +N    +     + +C +L+ L+L+GN+L          L  +
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 13/126 (10%)

Query: 695 LSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSI 754
           L L   +L+  +   +  L  +  L+L  N L    P+       L  L + +       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 755 PADLGRLTELQVILDLSKNNF-SGEIPPSLGSLLKLERLNISYNQL------QGQVPASL 807
             D          L L  N          L S  +L  LN+  N L      Q ++   L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 808 GKLTSL 813
             ++S+
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 94  TLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGE 153
            L L+   LT L    L QL  +  L L  N     +PP +  L  L+VL+  DN    E
Sbjct: 2   VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN--ALE 56

Query: 154 IPPHIGNLTELRELAIAYCQLNG-SIPVEIGNLKHLTSLDLQMNKLSGL 201
               + NL  L+EL +   +L   +    + +   L  L+LQ N L   
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 237 QILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSG 296
           ++L+LA+  L+  +   L  L  + +L+L  N      P+    LA L  L++ + + + 
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNA 54

Query: 297 SISLLNTQLKN-LETLVLSDNAFTGSIPIKFCLNNSSLQQLILARNKLSGEFPLELLRCS 355
             ++        L+ L+L +N    S  I+  ++   L  L L  N L  E  ++     
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 356 SLQQL 360
            L  +
Sbjct: 115 MLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 718 VLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSG 777
           VL+L    L+  +   ++Q   +  L LS N      PA    L  L+ +  L  ++ + 
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNAL 55

Query: 778 EIPPSLGSLLKLERLNISYNQLQG-QVPASLGKLTSLHVLNLSNNHLQG 825
           E    + +L +L+ L +  N+LQ       L     L +LNL  N L  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 191 LDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSI 250
           L L    L+ L    +     +     S+N L    P+    L +L+ L +   S +   
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 251 PVE-LSHLFNLRYLNLLGN-IFDGEIPSELNKLAQLEELDLSKNNLS---GSISLLNTQL 305
            V+ +++L  L+ L L  N +        L    +L  L+L  N+L    G    L   L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 306 KNLETLV 312
            ++ +++
Sbjct: 117 PSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+L+   L+  +      L  +  LDLS N L  L P+ L  L+ L +  L ++  + + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEV--LQASDNALEN 57

Query: 131 PPEIGFLNKLQVLRIGDNLL-WGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLT 189
              +  L +LQ L + +N L        + +   L  L +    L     ++    + L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 190 SL 191
           S+
Sbjct: 118 SV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 479 ILQLRQNDLSGPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGP 538
           +L L   DL+  +   L     +  + L+ N+L    P          L  L  +     
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRC---LEVLQASDNALE 56

Query: 539 LPPSLFQLKKLRIINFSHNKFSG--SIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNL 596
               +  L +L+ +   +N+     +I PL     L  L+L  NS       +  ++  L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 597 SRLR 600
             + 
Sbjct: 117 PSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 767 ILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQ 826
           +L L+  + +  +   L  LL +  L++S+N+L+   P +L  L  L VL  S+N L+  
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 827 LPLTFSGFPLSSFLGNAKLCGPPLLSC 853
             +          L N +L     +  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQP 85

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 16/198 (8%)

Query: 66  KHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNS 125
              +   L  + ++ ++S+   +L  + TL      +  +    +  L NL  +   +N 
Sbjct: 18  AEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ 73

Query: 126 FSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNL 185
            +            L+ L    ++L                        N  I       
Sbjct: 74  LTDI--------TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125

Query: 186 KHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNS 245
                  L+++  +     A+ G   LQ+   S+N +    P  +  L +L+ L++++N 
Sbjct: 126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK 183

Query: 246 LSGSIPVELSHLFNLRYL 263
           +S      L+ L NL  L
Sbjct: 184 VSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 19/188 (10%)

Query: 642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701
           A+    +L    +T T+      L ++  L              +   + L +++   N 
Sbjct: 18  AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQ 73

Query: 702 LSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRL 761
           L+   P +        ++N  + +    + +               +        +L RL
Sbjct: 74  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133

Query: 762 TELQVILD-------------LSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLG 808
                 +              L+ ++        L +L  LERL+IS N++     + L 
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLA 191

Query: 809 KLTSLHVL 816
           KLT+L  L
Sbjct: 192 KLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 15/198 (7%)

Query: 522 LSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTGSNSLTALDLTNNS 581
           L+E     L   +    +  +   L ++  +         SI  +   N+LT ++ +NN 
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQ 73

Query: 582 FSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKC 641
            +   P +                      ++   +T L  L                  
Sbjct: 74  LTDITPLKNLT----------KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 642 AKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNN 701
            K    L      + TI              L+ ++   T    + N + L +L +  N 
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK 183

Query: 702 LSGKIPPEIGNLTALNVL 719
           +S      +  LT L  L
Sbjct: 184 VSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 43  ILENWSARAHMCSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSL 102
            LE  S      S      S  Q +     ++         +   NLT+LE LD+SSN +
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDL-------KPLANLTTLERLDISSNKV 184

Query: 103 TGLIPSELGQLQNLRIL 119
           + +  S L +L NL  L
Sbjct: 185 SDI--SVLAKLTNLESL 199

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 25/171 (14%), Positives = 45/171 (26%), Gaps = 24/171 (14%)

Query: 90  TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNL 149
                L  + +         L   +NL  L + +      +                   
Sbjct: 8   HGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELR---------------- 50

Query: 150 LWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGC 209
                   +  L ELR L I    L    P        L+ L+L  N L  L  + + G 
Sbjct: 51  -------DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103

Query: 210 EELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNL 260
              +   + N +        +   +   +  +    L       L+H+ N 
Sbjct: 104 SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 3/139 (2%)

Query: 670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEI-GNLTALNVLNLQRNSLSG 728
            L  + +         +     L +L +        +       L  L  L + ++ L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLK 788
             P       +L  L LS N    S+     +   LQ ++              L    +
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129

Query: 789 LERLNISYNQLQGQVPASL 807
                +   +LQ      L
Sbjct: 130 EGLGGVPEQKLQCHGQGPL 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 21/162 (12%), Positives = 40/162 (24%), Gaps = 31/162 (19%)

Query: 83  SRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQV 142
           +  + N      LDL    +                           I      L++   
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-------------------------VIENLGATLDQFDA 45

Query: 143 LRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLI 202
           +   DN +          L  L+ L +   ++          L  LT L L  N L  L 
Sbjct: 46  IDFSDNEIR--KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103

Query: 203 PEAIHGCEELQKFAASNNM----LEGTIPSSIVLLKSLQILN 240
                   +   +           +      I  +  +++L+
Sbjct: 104 DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 7/128 (5%)

Query: 71  LNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKI 130
           L+L    +   I      L   + +D S N +  L       L+ L+ LL+ +N      
Sbjct: 23  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRICRIG 79

Query: 131 PPEIGFLNKLQVLRIGD----NLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLK 186
                 L  L  L + +     L   +    + +LT L  L              I  + 
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 187 HLTSLDLQ 194
            +  LD Q
Sbjct: 140 QVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 6/142 (4%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
           +     N   +  ELDL    +   I  L   L   + +  SDN       +        
Sbjct: 10  QAAQYTN-AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRR 64

Query: 333 LQQLILARNKLSGEFPLELLRCSSLQQLDLSDNSFKG-ELPRSLDKLEELTDLLLNNNSF 391
           L+ L++  N++             L +L L++NS         L  L+ LT L +  N  
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

Query: 392 TGSFPPEIGNLSKLENLFLFDN 413
           T      +  + K+  + + D 
Sbjct: 125 TNKKHYRLYVIYKVPQVRVLDF 146

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 273 EIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAFTGSIPIKFCLNNSS 332
           ++   ++K     +  L    L     L          L    +    ++ I    N   
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRSDPDL--VAQNIDVVLNRRSS-MAATLRIIEE-NIPE 66

Query: 333 LQQLILARNKLSG--EFPLELLRCSSLQQLDLSDNSFKGELPRSLDKLEELTDLLLNNNS 390
           L  L L+ N+L    +    + +  +L+ L+LS N  K E      K  +L +L L+ NS
Sbjct: 67  LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126

Query: 391 FTGSFPPEIGNLSKLENLF 409
            + +F  +   +S +   F
Sbjct: 127 LSDTFRDQSTYISAIRERF 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	970
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.26
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.6e-40  Score=357.54  Aligned_cols=294  Identities=31%  Similarity=0.464  Sum_probs=264.4

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCC--ccceEecCCC--CCEEEEECCCCCCcc--ccccCccCCCCCcE
Q 036729           21 GGISTDSFWLLRIKQELVDPTGILENWSARAHMCS--WHGVTCSDDQ--KHVVGLNLSSSGLSG--SISRDFLNLTSLET   94 (970)
Q Consensus        21 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~l~~l~~L~~   94 (970)
                      -|.++|++||++||+++.+|. .+++|..++|||.  |.||+|+...  +||++|+|++++++|  .+|+.++++++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            388999999999999999874 6899988889995  9999998643  489999999999998  57899999999999


Q ss_pred             EECCC-CCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhccccc
Q 036729           95 LDLSS-NSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQ  173 (970)
Q Consensus        95 L~Ls~-n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~  173 (970)
                      |+|++ |+++|.+|..|+++++|++|+|++|.+.+..|..+..+.+|+++++++|.+.+.+|..++++++|+++++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            99997 88999999999999999999999999999889889999999999999999999999999999999999999999


Q ss_pred             cccCCCccccCCcee-eEEEcCCCcCCCCCcccccCCcccccccccccccCCCCcccccCCCCCcEEEccCCcCccccCc
Q 036729          174 LNGSIPVEIGNLKHL-TSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPV  252 (970)
Q Consensus       174 ~~~~~p~~l~~l~~L-~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  252 (970)
                      +.+.+|..++.+..+ +.+++++|++++..|..+..+..+ .+++..+...+.+|..+..+++++.+++++|.+++.+| 
T Consensus       161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-  238 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-  238 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-
Confidence            999999999888776 889999999999988888877655 68888898888999989999999999999999887655 


Q ss_pred             cccCCCCCCEEEccCccccccCCccccCCCCccEEECcCCcCccccccccCCCCCccEEEccCCcc
Q 036729          253 ELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKNNLSGSISLLNTQLKNLETLVLSDNAF  318 (970)
Q Consensus       253 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  318 (970)
                      .+..+++|++|++++|+++|.+|..|+++++|++|+|++|+++|.+|. +.++++|+.+++++|+.
T Consensus       239 ~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            588889999999999999999999999999999999999999988874 57788888888888863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.1e-31  Score=289.19  Aligned_cols=256  Identities=32%  Similarity=0.574  Sum_probs=167.4

Q ss_pred             CCceeccCccccC--CCCcccccCCCCcEEEccC-CcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEE
Q 036729          596 LSRLRLAHNHLTG--NIPSEFGKLTELNFLDLSF-NSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELD  672 (970)
Q Consensus       596 L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  672 (970)
                      ++.|+|++|.++|  .+|..++++++|++|||++ |.++|.+|+.++++++|++|+|++|++.+..+..+..++.|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            3344444444443  2455555555555555554 555555555555556666666666665555555555566666666


Q ss_pred             cccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccccc-ceeccCCCccccccchhhhcccCCcEEECcccccc
Q 036729          673 LSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL-NVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFT  751 (970)
Q Consensus       673 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L-~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  751 (970)
                      +++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++.+.
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            66666666666666666666666666666666666666555554 566666666666666666655443 5777777777


Q ss_pred             ccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCCc--
Q 036729          752 GSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLPL--  829 (970)
Q Consensus       752 ~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p~--  829 (970)
                      |.+|..++.++.++. +++++|.+++.+| .++.+++|+.|||++|+++|.+|++++++++|++||+++|+++|.+|.  
T Consensus       211 ~~~~~~~~~~~~l~~-l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         211 GDASVLFGSDKNTQK-IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             ECCGGGCCTTSCCSE-EECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccccccccccccccc-ccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            777777777777766 7777777776654 567777888888888888888888888888888888888888887772  


Q ss_pred             cccCCCCcccCCCCCCCCCCCCCCC
Q 036729          830 TFSGFPLSSFLGNAKLCGPPLLSCS  854 (970)
Q Consensus       830 ~~~~~~~~~~~~n~~lc~~~~~~c~  854 (970)
                      .+..+....+.+|+.+||.|++.|.
T Consensus       289 ~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cCCCCCHHHhCCCccccCCCCCCCC
Confidence            3455566677888888888887773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=6.6e-26  Score=251.97  Aligned_cols=193  Identities=32%  Similarity=0.387  Sum_probs=129.5

Q ss_pred             cccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCc
Q 036729          612 SEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSK  691 (970)
Q Consensus       612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  691 (970)
                      ..+..+++++.+++++|.+++..|  +..+++|++|++++|.++..  ..+..+++|+.|++++|.+++..+  +..+++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~  264 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTK  264 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--cccccc
Confidence            345556666666666666665433  34456666666666666542  245666677777777777665443  566677


Q ss_pred             ceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCC
Q 036729          692 LLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLS  771 (970)
Q Consensus       692 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls  771 (970)
                      |++|++++|++++..  .+..++.++.+++..|++++.  ..+..+++++.|++++|++++..  .+..++.|+. |+++
T Consensus       265 L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~-L~L~  337 (384)
T d2omza2         265 LTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQR-LFFA  337 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCE-EECC
T ss_pred             CCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCE-EECC
Confidence            777777777766542  355666777777777776653  24666777777777777777543  2666777777 7777


Q ss_pred             CCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCC
Q 036729          772 KNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNN  821 (970)
Q Consensus       772 ~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N  821 (970)
                      +|.+++ +| .++++++|++|++++|++++..|  +.++++|++|++++|
T Consensus       338 ~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         338 NNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            777774 33 57888888888888888887665  778888888888877

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.2e-25  Score=249.82  Aligned_cols=356  Identities=25%  Similarity=0.343  Sum_probs=274.8

Q ss_pred             ecccccccccCCccccCCCCCCEEEcccccCCCcCCcccccCCCCCEEeccccccCCcccccccCCCCccEEeeccccCC
Q 036729          409 FLFDNMITGKIPVEIGKLQTLSAIYLYDNQMSGSIPRELTNCSGLTEIDFFGNHFSGSIPETMGKLKNLVILQLRQNDLS  488 (970)
Q Consensus       409 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  488 (970)
                      .+..+.+++.+.  ...+.+|++|+++++.++..  ..+..+++|++|++++|++++..+  ++++++|++|++++|.+.
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccc
Confidence            455566665544  34677899999999988753  467889999999999999987643  889999999999999998


Q ss_pred             CCCCCcccccccccEEeccCCcccCccCcchhcCCCCceEEccccccccCCCccccCCCCCcEEEccccccccccCCCCC
Q 036729          489 GPIPASLGYCKRLQQIALADNKLSGSVPLTFRFLSELYLITLYNNSFKGPLPPSLFQLKKLRIINFSHNKFSGSIYPLTG  568 (970)
Q Consensus       489 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~  568 (970)
                      +..  .+..+++|+.++++++.+++..+.  .....+.......+.+....+...................    ..+..
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  173 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL----KPLAN  173 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC----GGGTT
T ss_pred             ccc--cccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccchh----hhhcc
Confidence            653  378899999999999988765543  3445666666666666544332222222222222222111    12333


Q ss_pred             CCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEE
Q 036729          569 SNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLL  648 (970)
Q Consensus       569 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~  648 (970)
                      ...........|...  ....+..+++++.+++++|.+++..|  +..+++|++|++++|.++..  +.+..+++|+.|+
T Consensus       174 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  247 (384)
T d2omza2         174 LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD  247 (384)
T ss_dssp             CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             ccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhc
Confidence            444555555555543  45567788999999999999987644  56788999999999999863  4678899999999


Q ss_pred             ccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCcccc
Q 036729          649 LSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSG  728 (970)
Q Consensus       649 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~  728 (970)
                      +++|.+++..+  +..+++|++|++++|++.+..+  +..++.++.+++++|.+++.  ..+..+++++.|++++|++++
T Consensus       248 l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~  321 (384)
T d2omza2         248 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISD  321 (384)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSC
T ss_pred             cccCccCCCCc--ccccccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCC
Confidence            99999997654  7889999999999999987654  77899999999999999863  457888999999999999998


Q ss_pred             ccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCC
Q 036729          729 NIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYN  797 (970)
Q Consensus       729 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N  797 (970)
                      ..+  +..+++|+.|++++|++++ +| .+.++++|+. |++++|.+++.+|  ++++++|++|+|++|
T Consensus       322 l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~-L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         322 ISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINW-LSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCE-EECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             Ccc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCE-EECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            653  8889999999999999985 44 6899999998 9999999997755  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.1e-23  Score=220.80  Aligned_cols=244  Identities=26%  Similarity=0.352  Sum_probs=152.2

Q ss_pred             CCccceEecCCCCCEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcC
Q 036729           54 CSWHGVTCSDDQKHVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPE  133 (970)
Q Consensus        54 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~  133 (970)
                      |.|++|.|++            .+++ .+|..+.  +.+++|+|++|.++...+..|.++++|++|++++|.+....|..
T Consensus        10 c~~~~~~C~~------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~   74 (305)
T d1xkua_          10 CHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   74 (305)
T ss_dssp             EETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             ecCCEEEecC------------CCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh
Confidence            7899999973            2333 4455443  57889999999888655567888899999999999888766778


Q ss_pred             CCCCCCCcEEEccCccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCC--CCCcccccCCcc
Q 036729          134 IGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLS--GLIPEAIHGCEE  211 (970)
Q Consensus       134 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~--~~~~~~l~~l~~  211 (970)
                      |..+++|++|++++|++.. +|..+  ...++.|++.+|.+.+..+..+.....++.++...|...  ...+..+..+++
T Consensus        75 f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~  151 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  151 (305)
T ss_dssp             TTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             hhCCCccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc
Confidence            8888899999998888753 44332  235566666666666554445555666666666665422  223344555556


Q ss_pred             cccccccccccCCCCcccccCCCCCcEEEccCCcCccccCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcC
Q 036729          212 LQKFAASNNMLEGTIPSSIVLLKSLQILNLANNSLSGSIPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSK  291 (970)
Q Consensus       212 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  291 (970)
                      |+.+++++|.+.. +|..  .+++|++|++++|..++..+..+..++.+++|++++|.+.+..+.++..+++|++|+|++
T Consensus       152 L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            6666666655542 2322  234556666666655555555555555566666665555555555555555555555555


Q ss_pred             CcCccccccccCCCCCccEEEccCCccc
Q 036729          292 NNLSGSISLLNTQLKNLETLVLSDNAFT  319 (970)
Q Consensus       292 n~l~~~~~~~~~~l~~L~~L~L~~n~l~  319 (970)
                      |.++.. |..+..+++|++|++++|+++
T Consensus       229 N~L~~l-p~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         229 NKLVKV-PGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             SCCSSC-CTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccc-ccccccccCCCEEECCCCccC
Confidence            555432 344555555555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.4e-24  Score=224.30  Aligned_cols=210  Identities=24%  Similarity=0.228  Sum_probs=151.3

Q ss_pred             CCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcc-cCcCcCCCCCCCCCCCcceEEE
Q 036729          618 TELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLS-SNNFNGTVPAEIGNCSKLLKLS  696 (970)
Q Consensus       618 ~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~N~l~~~~p~~l~~l~~L~~L~  696 (970)
                      +++++|+|++|+++...+..|.++++|++|++++|++.+..+..+..++.++.++.. .|.+....+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            345666666666665555566666666666666666666656666666666666543 3445555566667777777777


Q ss_pred             ccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCccc
Q 036729          697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS  776 (970)
Q Consensus       697 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~  776 (970)
                      +++|.+....+..+...++|+.+++++|++++..+..|..++.|+.|++++|++++..|..+..++.|+. +++++|.++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~-l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR-LLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccch-hhhhhcccc
Confidence            7777766655666666677777777777777666667777777777777777777666677777777777 778888888


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          777 GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       777 g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +..|..|.++++|++||+++|++++..|..+..+++|++|++++|++.|.++
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            7778888888888888888888888888888888888888888888888877

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-24  Score=226.75  Aligned_cols=258  Identities=22%  Similarity=0.205  Sum_probs=198.4

Q ss_pred             EECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEcc-CCc
Q 036729          575 LDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLS-NNE  653 (970)
Q Consensus       575 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~-~n~  653 (970)
                      ++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++||+++|.+.+..+..+..+..++.+... .|.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344444444 2344332  457778888888876666678888888888888888887777777778888887764 455


Q ss_pred             ccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchh
Q 036729          654 LTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPST  733 (970)
Q Consensus       654 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~  733 (970)
                      ++...+..|.++++|++|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|+.|++++|++++..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            66666777888888888888888887777777788888888888888888777777888888888888888888888888


Q ss_pred             hhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcC
Q 036729          734 IQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSL  813 (970)
Q Consensus       734 ~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L  813 (970)
                      |.++++|+.+++++|++++..|..|..+++++. ||+++|.+++..|..|+++++|++|++++|.+.+.-+. ..-...+
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~-L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l  250 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT-LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWL  250 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHH
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhccc-ccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHH
Confidence            888888888888888888888888888888887 88999998888888888999999999999988764331 1112356


Q ss_pred             cEEecCCCcccccCCccccCCCCc
Q 036729          814 HVLNLSNNHLQGQLPLTFSGFPLS  837 (970)
Q Consensus       814 ~~l~ls~N~l~g~~p~~~~~~~~~  837 (970)
                      +.+....+.+.|..|..+.+.+..
T Consensus       251 ~~~~~~~~~~~C~~p~~l~g~~l~  274 (284)
T d1ozna_         251 QKFRGSSSEVPCSLPQRLAGRDLK  274 (284)
T ss_dssp             HHCCSEECCCBEEESGGGTTCBGG
T ss_pred             HhCcCCCCceEeCCchHHcCCccc
Confidence            667777788888888777654433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.1e-22  Score=217.46  Aligned_cols=270  Identities=21%  Similarity=0.269  Sum_probs=199.3

Q ss_pred             CcEEEccccccccccCCCCCCCcccEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCC
Q 036729          549 LRIINFSHNKFSGSIYPLTGSNSLTALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN  628 (970)
Q Consensus       549 L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  628 (970)
                      .+.++.+++.++.....+  .+++++|++++|+++...+..|..+++|++|++++|.+....|..|..++.|++|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            344555555554322222  245677777777776655666777778888888888877777777888888888888888


Q ss_pred             cCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCc--CCCCCCCCCCCcceEEEccCCcCcccC
Q 036729          629 SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFN--GTVPAEIGNCSKLLKLSLRGNNLSGKI  706 (970)
Q Consensus       629 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~  706 (970)
                      +++.. |..+  ...++.|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+++++++|.++. +
T Consensus        90 ~l~~l-~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l  165 (305)
T d1xkua_          90 QLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I  165 (305)
T ss_dssp             CCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred             ccCcC-ccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence            87753 3332  346778888888887766666777777777887777543  3345567778888888888888774 3


Q ss_pred             CcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCccccCC
Q 036729          707 PPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSL  786 (970)
Q Consensus       707 ~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l  786 (970)
                      |..+  +++|+.|++++|..++..+..+..++.++.|++++|.+++..+..+.+++.|++ |+|++|.++ .+|.++.++
T Consensus       166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~-L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         166 PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE-LHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE-EECCSSCCS-SCCTTTTTC
T ss_pred             Cccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee-eeccccccc-ccccccccc
Confidence            4332  467888888888888888888888888889999999888887888888888888 899999888 568889999


Q ss_pred             CCCCEEeCCCCcCccccCcc------cCCCCcCcEEecCCCccc-ccCC
Q 036729          787 LKLERLNISYNQLQGQVPAS------LGKLTSLHVLNLSNNHLQ-GQLP  828 (970)
Q Consensus       787 ~~L~~L~ls~N~l~~~~p~~------l~~l~~L~~l~ls~N~l~-g~~p  828 (970)
                      ++|++|+|++|+|+..-+..      +..+.+|+.|++++|++. ..+|
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCC
Confidence            99999999999998654333      345688999999999985 4454

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-22  Score=209.36  Aligned_cols=204  Identities=23%  Similarity=0.196  Sum_probs=148.9

Q ss_pred             CCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEE
Q 036729          617 LTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLS  696 (970)
Q Consensus       617 l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  696 (970)
                      ...+.++|.+++.++. +|+.+.  +++++|+|++|++++..+..|.++++|++|+|++|+++.. | .++.+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccc
Confidence            3444555666666653 444442  3566666666666655555666666666666666666533 2 245667777777


Q ss_pred             ccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCccc
Q 036729          697 LRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS  776 (970)
Q Consensus       697 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~  776 (970)
                      +++|++++ .+..+..+++|++|++++|.+.+..+..+..+.+++.|++++|.+++..+..+..++.++. +++++|.++
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~-l~l~~N~l~  161 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK-LSLANNNLT  161 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE-EECTTSCCS
T ss_pred             cccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchh-ccccccccc
Confidence            77777664 3455667777777777777777777777777777888888888887666666777777877 888888888


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCCCcccccCC
Q 036729          777 GEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSNNHLQGQLP  828 (970)
Q Consensus       777 g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~g~~p  828 (970)
                      +..+..|+.+++|++|||++|+|+ .+|+.+..+++|+.|++++|++.|.+.
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            888888999999999999999998 789999999999999999999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.6e-21  Score=199.66  Aligned_cols=197  Identities=25%  Similarity=0.244  Sum_probs=137.1

Q ss_pred             CCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEccc
Q 036729          596 LSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSS  675 (970)
Q Consensus       596 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  675 (970)
                      +.+++.+++.++ .+|..+.  +++++|||++|++++..+..|.++++|++|+|++|+++.. | .++.+++|++|++++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccc
Confidence            344455555555 2444432  3566666666666665555666666677777777766532 2 245667777777777


Q ss_pred             CcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCc
Q 036729          676 NNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIP  755 (970)
Q Consensus       676 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip  755 (970)
                      |++++ .+..+..+++|++|++++|.+.+..+..+..+.++++|++++|.++...+..+..++.++.+++++|++++..+
T Consensus        87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_          87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             ccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc
Confidence            77764 34566677777777777777776666667777777777777777777777777777778888888888877666


Q ss_pred             hhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036729          756 ADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQ  800 (970)
Q Consensus       756 ~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~  800 (970)
                      ..+..++.|+. |||++|.|+ .+|..+..+++|+.|+|++|.+.
T Consensus       166 ~~~~~l~~L~~-L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         166 GLLNGLENLDT-LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTCTTCCE-EECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccccce-eecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            77777777777 888888887 77777778888889999988765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.72  E-value=1.4e-15  Score=165.46  Aligned_cols=97  Identities=25%  Similarity=0.356  Sum_probs=66.7

Q ss_pred             CCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhc
Q 036729           90 TSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAI  169 (970)
Q Consensus        90 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L  169 (970)
                      .++++|||++++++ .+|+.   .++|++|+|++|.++ .+|..+   .+|++|++++|.+. .++. +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence            46889999999997 57753   578999999999998 778654   57889999988764 2221 1  124666666


Q ss_pred             cccccccCCCccccCCceeeEEEcCCCcCCC
Q 036729          170 AYCQLNGSIPVEIGNLKHLTSLDLQMNKLSG  200 (970)
Q Consensus       170 ~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~  200 (970)
                      ++|.+. .+| .++++++|++|+++++.+..
T Consensus       106 ~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         106 SNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCSC
T ss_pred             cccccc-ccc-chhhhccceeeccccccccc
Confidence            666665 334 24566666666666665543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.72  E-value=6.9e-16  Score=167.82  Aligned_cols=137  Identities=27%  Similarity=0.301  Sum_probs=97.6

Q ss_pred             CEEEEECCCCCCccccccCccCCCCCcEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEcc
Q 036729           67 HVVGLNLSSSGLSGSISRDFLNLTSLETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIG  146 (970)
Q Consensus        67 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~  146 (970)
                      ++++|||++++++ .+|+.   .++|++|+|++|.++ .+|..   +.+|+.|++++|.++ .++. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--cccccccccc
Confidence            5779999999997 46643   578999999999998 67765   468999999999887 4443 1  2469999999


Q ss_pred             CccCCccCCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCCcCCCCCcccccCCcccccccccccccC
Q 036729          147 DNLLWGEIPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMNKLSGLIPEAIHGCEELQKFAASNNMLE  223 (970)
Q Consensus       147 ~n~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~l~~n~l~  223 (970)
                      +|.+. .+|. ++++++|++|+++++.+... +..   ...+..+.+..+....  ...+..++.++.+.+..|...
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~~---~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccc-cccc-hhhhccceeecccccccccc-ccc---cccccchhhccccccc--cccccccccceeccccccccc
Confidence            99986 4564 68899999999999987633 322   3455566666554432  234455566666666655544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3e-17  Score=166.06  Aligned_cols=204  Identities=23%  Similarity=0.339  Sum_probs=132.2

Q ss_pred             ceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCc
Q 036729          598 RLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN  677 (970)
Q Consensus       598 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  677 (970)
                      .++++.+++++..  .+.++.+|+.|++++|.++..  +.+..+++|++|++++|.+++..|  +..+++++++++++|.
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            3445555554332  345556666666666666642  246666666666666666665433  5666667777777666


Q ss_pred             CcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchh
Q 036729          678 FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPAD  757 (970)
Q Consensus       678 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~  757 (970)
                      ++.. + .+..+++|+.++++++...+.  ..+...+.++.+.++++.+....  .+..+++|+.|++++|.+++..  .
T Consensus        97 ~~~i-~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~  168 (227)
T d1h6ua2          97 LKNV-S-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--P  168 (227)
T ss_dssp             CSCC-G-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--G
T ss_pred             cccc-c-ccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--h
Confidence            6532 2 356667777777777666543  23455566777777777665443  3556677777777777776432  3


Q ss_pred             hhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCC
Q 036729          758 LGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN  820 (970)
Q Consensus       758 l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~  820 (970)
                      ++++++|+. ||+++|.+++ +| .++++++|++|++++|++++..|  ++++++|++|++++
T Consensus       169 l~~l~~L~~-L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTT-LKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCE-EECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             hccccccee-cccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            667777777 8888888775 33 37888889999999998886543  78888888888863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.7e-17  Score=168.48  Aligned_cols=220  Identities=16%  Similarity=0.098  Sum_probs=144.9

Q ss_pred             CceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCc-cccccccCccceEEccc
Q 036729          597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI-PFWLGSLQEIGELDLSS  675 (970)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~  675 (970)
                      +.++.++..++ .+|..+.  +++++||+++|+++...+..|.++++|++|++++|.+...+ +.+|..++.++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            34455555554 4444332  35667777777776555556677777777777777665543 33566677777776653


Q ss_pred             -CcCcCCCCCCCCCCCcceEEEccCCcCcccCCc-ccccccccceeccCCCccccccchhhhccc-CCcEEECccccccc
Q 036729          676 -NNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPP-EIGNLTALNVLNLQRNSLSGNIPSTIQQCK-KLYELRLSENFFTG  752 (970)
Q Consensus       676 -N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~  752 (970)
                       |++....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....+..|..++ .++.|++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             556666666677777777777777776643322 234455555556666666665556666554 67788888888884


Q ss_pred             cCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCC
Q 036729          753 SIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN  820 (970)
Q Consensus       753 ~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~  820 (970)
                       ++........+...+++++|.++...+..|.++++|++||+++|+++...+..|.+++.|+++++++
T Consensus       168 -i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         168 -IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             -ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             -cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence             4444445555554356788888865556789999999999999999966666788888888877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=5.9e-17  Score=158.79  Aligned_cols=171  Identities=20%  Similarity=0.266  Sum_probs=119.3

Q ss_pred             cEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCc-cccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccC
Q 036729          621 NFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTI-PFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRG  699 (970)
Q Consensus       621 ~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  699 (970)
                      ++++.++++++ .+|..+.  +++++|+|++|++++.+ +..|..+++|+.|++++|++.+..+..|..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45667777776 3454442  56777888888776533 55677788888888888888888788888888888888888


Q ss_pred             CcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccC
Q 036729          700 NNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEI  779 (970)
Q Consensus       700 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~i  779 (970)
                      |++++..|..|.++++|++|+|++|+|++..++.|..+++|++|+|++|++.+..+... -...+.. ..+..|.++...
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~-~~l~~~~~~c~~  165 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRK-KSLNGGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHH-HCCSGGGCBBCS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-Hhhhhhh-hcccCCCeEeCC
Confidence            88887777788888888888888888888888888888888999999988876443211 1223444 566666665554


Q ss_pred             CccccCCCCCCEEeCCCCcC
Q 036729          780 PPSLGSLLKLERLNISYNQL  799 (970)
Q Consensus       780 p~~~~~l~~L~~L~ls~N~l  799 (970)
                      |..+   ..++.+||+.|++
T Consensus       166 p~~l---~~~~l~~L~~n~l  182 (192)
T d1w8aa_         166 PSKV---RDVQIKDLPHSEF  182 (192)
T ss_dssp             STTT---TTSBGGGSCTTTC
T ss_pred             Chhh---cCCEeeecCHhhC
Confidence            4332   2333444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=8.4e-17  Score=162.70  Aligned_cols=190  Identities=25%  Similarity=0.286  Sum_probs=136.6

Q ss_pred             cccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccc
Q 036729          590 LAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIG  669 (970)
Q Consensus       590 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  669 (970)
                      +..+.+|+.|++.+|.++. + ..+..+++|++|++++|.+++..+  +..+++++++++++|.++..  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~  110 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccccccccc
Confidence            3455667777777777664 3 346777777777777777775433  67777778888877777643  2466777888


Q ss_pred             eEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECcccc
Q 036729          670 ELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENF  749 (970)
Q Consensus       670 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  749 (970)
                      .++++++...+..+  +...+.++.+.++++.+...  ..+...++|+.|++++|.+....  .++++++|+.|++++|+
T Consensus       111 ~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         111 TLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccch--hccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCc
Confidence            88888777765433  55667778888888777643  33667778888888888876543  37788888888888888


Q ss_pred             ccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCC
Q 036729          750 FTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISY  796 (970)
Q Consensus       750 l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~  796 (970)
                      +++ +| .+..+++|+. |++++|++++. | .++++++|+.|++++
T Consensus       185 l~~-l~-~l~~l~~L~~-L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISD-IS-PLASLPNLIE-VHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCC-CG-GGGGCTTCCE-EECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cCC-Ch-hhcCCCCCCE-EECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            875 33 3778888887 88899888854 3 388999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-19  Score=204.87  Aligned_cols=110  Identities=19%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             CCCeeecccccccccC-CccccCCCCCCEEEcccccCCC----cCCcccccCCCCCEEeccccccCCcc----ccccc-C
Q 036729          404 KLENLFLFDNMITGKI-PVEIGKLQTLSAIYLYDNQMSG----SIPRELTNCSGLTEIDFFGNHFSGSI----PETMG-K  473 (970)
Q Consensus       404 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~-~  473 (970)
                      +|+.||++++++++.. ...+..++++++|+|++|.++.    .+...+..+++|++||+++|.++...    .+.+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4666777766665422 2224456667777777776653    23344566777777777777765321    11222 1


Q ss_pred             CCCccEEeeccccCCCC----CCCcccccccccEEeccCCcccC
Q 036729          474 LKNLVILQLRQNDLSGP----IPASLGYCKRLQQIALADNKLSG  513 (970)
Q Consensus       474 l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~  513 (970)
                      ..+|+.|++++|+++..    ++..+..+++|+.|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            24577777777776542    23345566777777777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=9e-17  Score=157.45  Aligned_cols=128  Identities=23%  Similarity=0.319  Sum_probs=62.5

Q ss_pred             cEEEccCCcccCCccccccccCccceEEcccCcCcCCC-CCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCC
Q 036729          645 AHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTV-PAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQR  723 (970)
Q Consensus       645 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~  723 (970)
                      ++++.++++++ .+|..+.  +++++|+|++|++++.+ +..|.++++|+.|++++|.+.+..+..+..+++|++|+|++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            45556665555 3343332  44555555555554422 33344555555555555555555555555555555555555


Q ss_pred             CccccccchhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCccc
Q 036729          724 NSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFS  776 (970)
Q Consensus       724 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~  776 (970)
                      |++++..|..|.++++|++|+|++|++++..|..|..++.|+. ++|++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~-l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS-LNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE-EECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc-ccccccccc
Confidence            5555444444555555555555555444433333444444443 444444433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.5e-19  Score=198.52  Aligned_cols=109  Identities=18%  Similarity=0.214  Sum_probs=62.3

Q ss_pred             CCCEEEcccccCCCcC-CcccccCCCCCEEeccccccCC----cccccccCCCCccEEeeccccCCCC----CCCccc-c
Q 036729          428 TLSAIYLYDNQMSGSI-PRELTNCSGLTEIDFFGNHFSG----SIPETMGKLKNLVILQLRQNDLSGP----IPASLG-Y  497 (970)
Q Consensus       428 ~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~-~  497 (970)
                      +|++|+++++++++.. ...+..++++++|+|++|.++.    .++..+..+++|+.|++++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4677777777776532 2334556777777777777663    2234455667777777777766421    111111 2


Q ss_pred             cccccEEeccCCcccCcc----CcchhcCCCCceEEccccccc
Q 036729          498 CKRLQQIALADNKLSGSV----PLTFRFLSELYLITLYNNSFK  536 (970)
Q Consensus       498 ~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~  536 (970)
                      ..+|+.|++++|++++..    +..+..+++|+.|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            235677777777665432    233445556666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-16  Score=161.06  Aligned_cols=198  Identities=19%  Similarity=0.134  Sum_probs=87.8

Q ss_pred             CCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCC-cccCcCcCcccEEEccC-CcccCCccccccccCccceEE
Q 036729          595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQI-APQLSKCAKLAHLLLSN-NELTGTIPFWLGSLQEIGELD  672 (970)
Q Consensus       595 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  672 (970)
                      ++++|++++|+++...+..|.++++|++|++++|.+...+ +..|.+++.++++.+.. |.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444333334444555555555555444322 22344444555554432 334444444445555555555


Q ss_pred             cccCcCcCCCC-CCCCCCCcceEEEccCCcCcccCCccccccc-ccceeccCCCccccccchhhhcccCCcE-EECcccc
Q 036729          673 LSSNNFNGTVP-AEIGNCSKLLKLSLRGNNLSGKIPPEIGNLT-ALNVLNLQRNSLSGNIPSTIQQCKKLYE-LRLSENF  749 (970)
Q Consensus       673 Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~  749 (970)
                      +++|++....+ ..+..+..+..+...++.+....+..+..++ .++.|++++|+++...+..+. ...+.. +++++|+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccc
Confidence            55555443222 1122334444444444444443334444332 444555555555433333322 222222 2344455


Q ss_pred             ccccCchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeC
Q 036729          750 FTGSIPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNI  794 (970)
Q Consensus       750 l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~l  794 (970)
                      ++...+..|..+++|+. ||+++|.++...+..|.++++|+.+++
T Consensus       189 l~~l~~~~f~~l~~L~~-L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVI-LDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCCCTTTTTTSCCCSE-EECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccHHHhcCCCCCCE-EECCCCcCCccCHHHHcCCcccccCcC
Confidence            55222233455555555 555555555333344555555555444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=4.3e-16  Score=154.86  Aligned_cols=181  Identities=27%  Similarity=0.351  Sum_probs=98.5

Q ss_pred             eeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcC
Q 036729          599 LRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNF  678 (970)
Q Consensus       599 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  678 (970)
                      ..++.+.+++.++.  ..+.+|++|++++|.+++..  .+..+++|++|++++|++++..+  ++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccc
Confidence            34555555443321  34556666666666665432  25556666666666666654322  34555566666666655


Q ss_pred             cCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCchhh
Q 036729          679 NGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPADL  758 (970)
Q Consensus       679 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l  758 (970)
                      ++. | .+.++++|+.|++++|.+...  ..+.                        .++.++.+++++|.+++  +..+
T Consensus       103 ~~l-~-~l~~l~~L~~L~l~~~~~~~~--~~l~------------------------~l~~l~~l~~~~n~l~~--~~~~  152 (210)
T d1h6ta2         103 KDL-S-SLKDLKKLKSLSLEHNGISDI--NGLV------------------------HLPQLESLYLGNNKITD--ITVL  152 (210)
T ss_dssp             CCG-G-GGTTCTTCCEEECTTSCCCCC--GGGG------------------------GCTTCCEEECCSSCCCC--CGGG
T ss_pred             ccc-c-ccccccccccccccccccccc--cccc------------------------ccccccccccccccccc--cccc
Confidence            532 2 244555555555555544321  2344                        44444555555554442  2234


Q ss_pred             hhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEEecCC
Q 036729          759 GRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVLNLSN  820 (970)
Q Consensus       759 ~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l~ls~  820 (970)
                      ..++.|+. +++++|.+++. + .++++++|+.|++++|+++. +| .+..+++|++|++++
T Consensus       153 ~~l~~L~~-l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         153 SRLTKLDT-LSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGCTTCSE-EECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccc-ccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            44455554 55566655532 2 26677777777777777764 44 477777788777763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=4.2e-16  Score=154.94  Aligned_cols=164  Identities=21%  Similarity=0.294  Sum_probs=127.0

Q ss_pred             EEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCc
Q 036729          574 ALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNE  653 (970)
Q Consensus       574 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~  653 (970)
                      ...+..+.+++.++.  ..+.+|+.|++++|.++...  .+..+++|++|++++|++++..  .++.+++|++|++++|+
T Consensus        28 ~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             HHHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence            345666666655443  35678999999999998543  5889999999999999999754  36889999999999999


Q ss_pred             ccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchh
Q 036729          654 LTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPST  733 (970)
Q Consensus       654 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~  733 (970)
                      +++. | .+..+++|+.|++++|.+...  ..+..+++++.+++++|.+++.  ..+..+++|+++++++|++++..+  
T Consensus       102 i~~l-~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~~--  173 (210)
T d1h6ta2         102 VKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  173 (210)
T ss_dssp             CCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             cccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--
Confidence            9864 4 488899999999999998743  3578899999999999998743  456677788888888887765432  


Q ss_pred             hhcccCCcEEECcccccc
Q 036729          734 IQQCKKLYELRLSENFFT  751 (970)
Q Consensus       734 ~~~l~~L~~L~Ls~N~l~  751 (970)
                      +.++++|+.|++++|+++
T Consensus       174 l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCCCEEECCCCCCC
Confidence            666677777766666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.5e-15  Score=149.54  Aligned_cols=179  Identities=27%  Similarity=0.374  Sum_probs=95.4

Q ss_pred             CceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccC
Q 036729          597 SRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSN  676 (970)
Q Consensus       597 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  676 (970)
                      ....++.+.+++.+  ....+.++++|++++|.++..  +.+..+++|++|++++|++++..|  ++++++|++|++++|
T Consensus        21 i~~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          21 MKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhCCCCCCCcc--CHHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            34455555555433  234566677777777766642  235556666666666666665433  556666666666666


Q ss_pred             cCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhcccCCcEEECccccccccCch
Q 036729          677 NFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCKKLYELRLSENFFTGSIPA  756 (970)
Q Consensus       677 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  756 (970)
                      .+....  .+.++++|+.|++++|.+...  ..+..+++|+.|++++|++...  +.+..+++|+.|+            
T Consensus        95 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~------------  156 (199)
T d2omxa2          95 QIADIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLN------------  156 (199)
T ss_dssp             CCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEE------------
T ss_pred             cccccc--ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccc------------
Confidence            555322  245555555555555554432  2244445555555555544321  1244444444444            


Q ss_pred             hhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcccCCCCcCcEE
Q 036729          757 DLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPASLGKLTSLHVL  816 (970)
Q Consensus       757 ~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~l  816 (970)
                                   +++|.+++. + .++++++|++|++++|+++. +| .++.+++|+.|
T Consensus       157 -------------l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         157 -------------FSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             -------------CCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             -------------cccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence                         444444432 1 25666677777777776664 22 35556666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.1e-15  Score=148.53  Aligned_cols=177  Identities=22%  Similarity=0.298  Sum_probs=142.1

Q ss_pred             cEEECCCCCCCCCCCcccccCcCCCceeccCccccCCCCcccccCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCC
Q 036729          573 TALDLTNNSFSGPIPSELAMSRNLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNN  652 (970)
Q Consensus       573 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n  652 (970)
                      ....++.+.+++.++  ...+.+++.|++++|.++..  +.+..+++|++|++++|++++..+  +.++++|++|++++|
T Consensus        21 i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccc
Confidence            344566777765443  34678899999999998853  468899999999999999997543  889999999999999


Q ss_pred             cccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccch
Q 036729          653 ELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPS  732 (970)
Q Consensus       653 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~  732 (970)
                      .+....  .++.++.|+.|++++|.+....  .+..+++|+.|++++|++...  +.+..+++|++|++++|++++..  
T Consensus        95 ~~~~~~--~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--  166 (199)
T d2omxa2          95 QIADIT--PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--  166 (199)
T ss_dssp             CCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--
T ss_pred             cccccc--cccccccccccccccccccccc--ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--
Confidence            987543  4889999999999999988643  478899999999999998743  46888999999999999998754  


Q ss_pred             hhhcccCCcEEECccccccccCchhhhhhhhhH
Q 036729          733 TIQQCKKLYELRLSENFFTGSIPADLGRLTELQ  765 (970)
Q Consensus       733 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  765 (970)
                      .+.++++|+.|++++|+++. ++ .+..+++|+
T Consensus       167 ~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~  197 (199)
T d2omxa2         167 PLANLTTLERLDISSNKVSD-IS-VLAKLTNLE  197 (199)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCS
T ss_pred             cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCC
Confidence            37889999999999998874 33 344444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-15  Score=159.29  Aligned_cols=180  Identities=17%  Similarity=0.242  Sum_probs=85.7

Q ss_pred             CCCCcEEEccCccCCcc-CCccccCCcccchhhccccccccCCCccccCCceeeEEEcCCC-cCCCCCcc-cccCCcccc
Q 036729          137 LNKLQVLRIGDNLLWGE-IPPHIGNLTELRELAIAYCQLNGSIPVEIGNLKHLTSLDLQMN-KLSGLIPE-AIHGCEELQ  213 (970)
Q Consensus       137 l~~L~~L~L~~n~~~~~-~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~Ls~n-~i~~~~~~-~l~~l~~L~  213 (970)
                      ..+|++||+++|.+... ++..+.++++|++|++++|.+++..+..++++++|++|+++++ .+++..-. .+.++++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34555555555544332 2233445555555555555555444555555566666666553 23322111 123455555


Q ss_pred             cccccccc-cCCC-Cccccc-CCCCCcEEEccCCc--Cccc-cCccccCCCCCCEEEccCcc-ccccCCccccCCCCccE
Q 036729          214 KFAASNNM-LEGT-IPSSIV-LLKSLQILNLANNS--LSGS-IPVELSHLFNLRYLNLLGNI-FDGEIPSELNKLAQLEE  286 (970)
Q Consensus       214 ~L~l~~n~-l~~~-~~~~l~-~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~  286 (970)
                      +|++++|. +++. +...+. ..++|+.|+++++.  ++.. +.....++++|++|++++|. +++.....+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            55555542 2211 111122 23456666666542  2211 11122345666666666543 44444455556666666


Q ss_pred             EECcCC-cCccccccccCCCCCccEEEccCC
Q 036729          287 LDLSKN-NLSGSISLLNTQLKNLETLVLSDN  316 (970)
Q Consensus       287 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  316 (970)
                      |++++| .+++.....+.++++|+.|+++++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666653 344443344455555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.3e-15  Score=153.82  Aligned_cols=157  Identities=27%  Similarity=0.295  Sum_probs=83.5

Q ss_pred             CCCCCcEEEccCCcCccc-cCccccCCCCCCEEEccCccccccCCccccCCCCccEEECcCC-cCccc-cccccCCCCCc
Q 036729          232 LLKSLQILNLANNSLSGS-IPVELSHLFNLRYLNLLGNIFDGEIPSELNKLAQLEELDLSKN-NLSGS-ISLLNTQLKNL  308 (970)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L  308 (970)
                      ...+|++||++++.++.. +...+.++++|++|++++|.+++..+..++.+++|++|++++| .++.. +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345677777777766543 2334566777777777777776666666777777777777774 34322 11223456777


Q ss_pred             cEEEccCCc-ccCC-CchhhhcCCCCCcEEEccCCc--CCCC-CccccccCCCCCEEeCCCCc-CCCCCCcccccccccc
Q 036729          309 ETLVLSDNA-FTGS-IPIKFCLNNSSLQQLILARNK--LSGE-FPLELLRCSSLQQLDLSDNS-FKGELPRSLDKLEELT  382 (970)
Q Consensus       309 ~~L~L~~n~-l~~~-~~~~~~~~~~~L~~L~L~~n~--l~~~-~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~  382 (970)
                      ++|+++++. +++. +...+....+.|+.|+++++.  ++.. +......|++|++|++++|. +++.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            777777653 2211 112222334566666666542  2221 22223456666666666543 3333333333444444


Q ss_pred             cccCCc
Q 036729          383 DLLLNN  388 (970)
Q Consensus       383 ~L~L~~  388 (970)
                      +|++++
T Consensus       204 ~L~L~~  209 (284)
T d2astb2         204 HLSLSR  209 (284)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            444444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=1.3e-14  Score=156.78  Aligned_cols=115  Identities=22%  Similarity=0.180  Sum_probs=55.2

Q ss_pred             cCCCCCcEEEccCCcCccc-----cCccccCCCCCCEEEccCcccccc----CCccccCCCCccEEECcCCcCccccccc
Q 036729          231 VLLKSLQILNLANNSLSGS-----IPVELSHLFNLRYLNLLGNIFDGE----IPSELNKLAQLEELDLSKNNLSGSISLL  301 (970)
Q Consensus       231 ~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~  301 (970)
                      ..++.|+.|++++|.++..     +...+..+++|++|++++|.++..    +...+..+++|++|++++|.+++.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3444555555555554321     122344455555555555554432    2233445555666666666554332211


Q ss_pred             ----cC--CCCCccEEEccCCcccCCC----chhhhcCCCCCcEEEccCCcCCC
Q 036729          302 ----NT--QLKNLETLVLSDNAFTGSI----PIKFCLNNSSLQQLILARNKLSG  345 (970)
Q Consensus       302 ----~~--~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~  345 (970)
                          +.  ..+.|++|++++|.+....    ...+....+.|+.|++++|.+..
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence                11  2345666666666654321    12222235567777777766653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.9e-13  Score=126.23  Aligned_cols=126  Identities=17%  Similarity=0.095  Sum_probs=50.6

Q ss_pred             cCCCCcEEEccCCcCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEE
Q 036729          616 KLTELNFLDLSFNSFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKL  695 (970)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  695 (970)
                      +...+++|||++|+++.. +..+..+++|+.|++++|+++.. + .+..+++|++|++++|+++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            333444444444444422 22233344444444444444321 1 23344444444444444443333223334444444


Q ss_pred             EccCCcCcccCC-cccccccccceeccCCCcccccc---chhhhcccCCcEEE
Q 036729          696 SLRGNNLSGKIP-PEIGNLTALNVLNLQRNSLSGNI---PSTIQQCKKLYELR  744 (970)
Q Consensus       696 ~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~  744 (970)
                      ++++|+++.... ..+..+++|++|++++|.++...   +..+..+++|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            444444432211 22344444444444444443221   12344445555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=7.9e-13  Score=117.77  Aligned_cols=102  Identities=31%  Similarity=0.387  Sum_probs=58.7

Q ss_pred             cEEECCCCCCCCCCCccccCCCCCcEeecCCCcCcCCCCcCCCCCCCCcEEEccCccCCccCCccccCCcccchhhcccc
Q 036729           93 ETLDLSSNSLTGLIPSELGQLQNLRILLLYSNSFSGKIPPEIGFLNKLQVLRIGDNLLWGEIPPHIGNLTELRELAIAYC  172 (970)
Q Consensus        93 ~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~~  172 (970)
                      |+|||++|+++ .++ .++.+++|++|++++|.++ .+|+.++.+++|++|++++|.+.+ +| .++++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            45666666665 333 3666666666666666665 456566666666666666666543 22 3555555555555555


Q ss_pred             ccccCC-CccccCCceeeEEEcCCCcCC
Q 036729          173 QLNGSI-PVEIGNLKHLTSLDLQMNKLS  199 (970)
Q Consensus       173 ~~~~~~-p~~l~~l~~L~~L~Ls~n~i~  199 (970)
                      ++.... ...++.+++|++|++++|+++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554322 234555666666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=4e-14  Score=152.79  Aligned_cols=138  Identities=21%  Similarity=0.216  Sum_probs=101.0

Q ss_pred             CCCCCcEEEccCCcCccc----cCccccCCCCCCEEEccCcccccc-----CCccccCCCCccEEECcCCcCccc----c
Q 036729          232 LLKSLQILNLANNSLSGS----IPVELSHLFNLRYLNLLGNIFDGE-----IPSELNKLAQLEELDLSKNNLSGS----I  298 (970)
Q Consensus       232 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~  298 (970)
                      ..+.|+.+++++|.++..    +...+...+.|+.|++++|.+...     +...+..+++|++|++++|.++..    +
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            456788899988887633    223356678999999999988642     234567889999999999988643    3


Q ss_pred             ccccCCCCCccEEEccCCcccCCCchhhh-----cCCCCCcEEEccCCcCCCCC----cccc-ccCCCCCEEeCCCCcCC
Q 036729          299 SLLNTQLKNLETLVLSDNAFTGSIPIKFC-----LNNSSLQQLILARNKLSGEF----PLEL-LRCSSLQQLDLSDNSFK  368 (970)
Q Consensus       299 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~----~~~~-~~~~~L~~L~Ls~n~l~  368 (970)
                      ...+..+++|++|++++|.+.+.-...++     ...+.|++|++++|.+....    ...+ .+++.|+.|++++|++.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            44567889999999999988754333332     13578999999999887532    2233 25789999999999986


Q ss_pred             C
Q 036729          369 G  369 (970)
Q Consensus       369 ~  369 (970)
                      .
T Consensus       316 ~  316 (344)
T d2ca6a1         316 E  316 (344)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7e-13  Score=124.50  Aligned_cols=112  Identities=20%  Similarity=0.114  Sum_probs=82.8

Q ss_pred             cCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCccccccccc
Q 036729          637 QLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTAL  716 (970)
Q Consensus       637 ~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L  716 (970)
                      .+.++..+++|+|++|+++.. +..+..+++|+.|++++|+++.. + .|..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            356677788888888888754 55567788888888888888744 3 47778888888888888876655556677888


Q ss_pred             ceeccCCCccccccc-hhhhcccCCcEEECcccccc
Q 036729          717 NVLNLQRNSLSGNIP-STIQQCKKLYELRLSENFFT  751 (970)
Q Consensus       717 ~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~  751 (970)
                      +.|++++|+++.... ..+..+++|+.|++++|+++
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc
Confidence            888888888765422 45677777888888887776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=3.4e-12  Score=113.55  Aligned_cols=63  Identities=30%  Similarity=0.388  Sum_probs=24.2

Q ss_pred             CcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCc
Q 036729          638 LSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLS  703 (970)
Q Consensus       638 l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  703 (970)
                      +..+++|++|++++|+++. +|..++.+++|++|++++|++++. | .+..+++|++|++++|+++
T Consensus        16 l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCC
T ss_pred             cccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccC
Confidence            3333444444444444332 233333344444444444444322 1 1333444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.8e-11  Score=109.06  Aligned_cols=107  Identities=21%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             cccEEEccCCcccCCccccccccCccceEEcccCc-CcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceecc
Q 036729          643 KLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNN-FNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNL  721 (970)
Q Consensus       643 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L  721 (970)
                      ..+.++.+++.+. ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+|+...+..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3444555555554 234445556666666665543 55555556666777777777777777666666777777777777


Q ss_pred             CCCccccccchhhhcccCCcEEECcccccc
Q 036729          722 QRNSLSGNIPSTIQQCKKLYELRLSENFFT  751 (970)
Q Consensus       722 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  751 (970)
                      ++|+++...+..|... .|+.|+|++|++.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCccc
Confidence            7777765555555443 5778888888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=1e-12  Score=128.03  Aligned_cols=129  Identities=26%  Similarity=0.275  Sum_probs=65.0

Q ss_pred             cccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccccceeccCCCccccccchhhhccc
Q 036729          659 PFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTALNVLNLQRNSLSGNIPSTIQQCK  738 (970)
Q Consensus       659 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  738 (970)
                      |..+..+++|++|+|++|+++.. + .+..+++|++|++++|.++. +|.....+++|+.|++++|+++..         
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l---------  108 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL---------  108 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH---------
T ss_pred             hhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccccccccccccc---------
Confidence            34455555566666666555532 2 24455555555555555442 232223333444444444444422         


Q ss_pred             CCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCC-ccccCCCCCCEEeCCCCcCccccCcc----------c
Q 036729          739 KLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIP-PSLGSLLKLERLNISYNQLQGQVPAS----------L  807 (970)
Q Consensus       739 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip-~~~~~l~~L~~L~ls~N~l~~~~p~~----------l  807 (970)
                                       ..+..++.|+. |++++|.++.... ..++.+++|+.|++++|++....+..          +
T Consensus       109 -----------------~~~~~l~~L~~-L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_         109 -----------------SGIEKLVNLRV-LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             -----------------HHHHHHHHSSE-EEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             -----------------ccccccccccc-cccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHH
Confidence                             12344444444 4444444442211 34566777777777777766554432          4


Q ss_pred             CCCCcCcEEe
Q 036729          808 GKLTSLHVLN  817 (970)
Q Consensus       808 ~~l~~L~~l~  817 (970)
                      ..+++|+.||
T Consensus       171 ~~lp~L~~LD  180 (198)
T d1m9la_         171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCCEES
T ss_pred             HHCCCcCEeC
Confidence            4566777766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-10  Score=107.31  Aligned_cols=107  Identities=19%  Similarity=0.139  Sum_probs=72.8

Q ss_pred             CCCceeccCccccCCCCcccccCCCCcEEEccCC-cCccCCcccCcCcCcccEEEccCCcccCCccccccccCccceEEc
Q 036729          595 NLSRLRLAHNHLTGNIPSEFGKLTELNFLDLSFN-SFTGQIAPQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDL  673 (970)
Q Consensus       595 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  673 (970)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++...|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3445666666555 34566667777777777655 466666667777777777777777777766777777777777777


Q ss_pred             ccCcCcCCCCCCCCCCCcceEEEccCCcCc
Q 036729          674 SSNNFNGTVPAEIGNCSKLLKLSLRGNNLS  703 (970)
Q Consensus       674 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  703 (970)
                      ++|+++...+..|.. .+|+.|+|++|++.
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCccc
Confidence            777777544444443 35777777777764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.08  E-value=1.8e-12  Score=126.24  Aligned_cols=115  Identities=22%  Similarity=0.232  Sum_probs=72.0

Q ss_pred             ccCcCcCcccEEEccCCcccCCccccccccCccceEEcccCcCcCCCCCCCCCCCcceEEEccCCcCcccCCcccccccc
Q 036729          636 PQLSKCAKLAHLLLSNNELTGTIPFWLGSLQEIGELDLSSNNFNGTVPAEIGNCSKLLKLSLRGNNLSGKIPPEIGNLTA  715 (970)
Q Consensus       636 ~~l~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~  715 (970)
                      ..+..+++|++|+|++|+++.. + .+..+++|++|++++|+++. +|..+..+++|++|++++|.++..  +.+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccccc
Confidence            3455555566666666665532 2 35556666666666666652 333334455677777777776643  34667778


Q ss_pred             cceeccCCCccccccc-hhhhcccCCcEEECccccccccCc
Q 036729          716 LNVLNLQRNSLSGNIP-STIQQCKKLYELRLSENFFTGSIP  755 (970)
Q Consensus       716 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip  755 (970)
                      |++|++++|+++.... ..+..+++|+.|++++|+++...+
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            8888888888765432 457778888888888888764433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.4e-07  Score=87.61  Aligned_cols=84  Identities=24%  Similarity=0.243  Sum_probs=45.7

Q ss_pred             hhhcccCCcEEECcccccccc--CchhhhhhhhhHhhhhCCCCcccccCCccccCCCCCCEEeCCCCcCccccCcc----
Q 036729          733 TIQQCKKLYELRLSENFFTGS--IPADLGRLTELQVILDLSKNNFSGEIPPSLGSLLKLERLNISYNQLQGQVPAS----  806 (970)
Q Consensus       733 ~~~~l~~L~~L~Ls~N~l~~~--ip~~l~~l~~L~~~L~ls~N~l~g~ip~~~~~l~~L~~L~ls~N~l~~~~p~~----  806 (970)
                      .+..++.|+.|+|++|+++..  ++..+..++.|+. |||++|.++...+-.+.....|+.|++++|.+++.....    
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~-L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI-LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCC-CCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccc-cccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            334555666666666666532  2234455556665 666666665432222333445677777777776544422    


Q ss_pred             ---cCCCCcCcEEe
Q 036729          807 ---LGKLTSLHVLN  817 (970)
Q Consensus       807 ---l~~l~~L~~l~  817 (970)
                         +..+|+|++||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence               44566777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.2e-07  Score=86.19  Aligned_cols=82  Identities=29%  Similarity=0.222  Sum_probs=44.9

Q ss_pred             ccccccceeccCCCcccccc--chhhhcccCCcEEECccccccccCchhhhhhhhhHhhhhCCCCcccccCCc-------
Q 036729          711 GNLTALNVLNLQRNSLSGNI--PSTIQQCKKLYELRLSENFFTGSIPADLGRLTELQVILDLSKNNFSGEIPP-------  781 (970)
Q Consensus       711 ~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~~L~ls~N~l~g~ip~-------  781 (970)
                      ..+++|++|+|++|+++...  +..+..+++|+.|+|++|.++..-+-.......++. +++++|.+++....       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~-L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE-LWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS-CCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce-eecCCCCcCcCcccchhHHHH
Confidence            34555666666666655432  334555666666666666665322222222334555 66666666654432       


Q ss_pred             cccCCCCCCEEe
Q 036729          782 SLGSLLKLERLN  793 (970)
Q Consensus       782 ~~~~l~~L~~L~  793 (970)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            245678888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.10  E-value=9.3e-05  Score=68.26  Aligned_cols=38  Identities=13%  Similarity=0.145  Sum_probs=16.2

Q ss_pred             cCCCCcEEEccCCcCccC----CcccCcCcCcccEEEccCCc
Q 036729          616 KLTELNFLDLSFNSFTGQ----IAPQLSKCAKLAHLLLSNNE  653 (970)
Q Consensus       616 ~l~~L~~L~Ls~n~l~~~----~~~~l~~~~~L~~L~L~~n~  653 (970)
                      ..+.|++|++++|.++..    +...+...++|++|++++|.
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            344455555555544421    11123334444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.08  E-value=0.00014  Score=67.08  Aligned_cols=86  Identities=10%  Similarity=0.091  Sum_probs=40.3

Q ss_pred             CCCCcEEEccCC-cCccc----cCccccCCCCCCEEEccCccccccCC----ccccCCCCccEEECcCCcCcccc----c
Q 036729          233 LKSLQILNLANN-SLSGS----IPVELSHLFNLRYLNLLGNIFDGEIP----SELNKLAQLEELDLSKNNLSGSI----S  299 (970)
Q Consensus       233 l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~~~~----~  299 (970)
                      .++|++|+|+++ .++..    +-..+...+.|++|++++|.+.....    ..+...+.|++|++++|.++...    .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355555555543 23221    11223445556666666555543211    22334455666666666554321    1


Q ss_pred             cccCCCCCccEEEccCCcc
Q 036729          300 LLNTQLKNLETLVLSDNAF  318 (970)
Q Consensus       300 ~~~~~l~~L~~L~L~~n~l  318 (970)
                      ..+...+.|++|++++|..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSS
T ss_pred             HHHHhCCcCCEEECCCCcC
Confidence            2334445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.26  E-value=0.00011  Score=67.82  Aligned_cols=63  Identities=14%  Similarity=0.201  Sum_probs=29.1

Q ss_pred             CCCCCcEEECCC-CCCCCC----CCccccCCCCCcEeecCCCcCcCCC----CcCCCCCCCCcEEEccCccC
Q 036729           88 NLTSLETLDLSS-NSLTGL----IPSELGQLQNLRILLLYSNSFSGKI----PPEIGFLNKLQVLRIGDNLL  150 (970)
Q Consensus        88 ~l~~L~~L~Ls~-n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~----p~~l~~l~~L~~L~L~~n~~  150 (970)
                      +.+.|++|+|++ +.++..    +..++...++|++|++++|.+....    -..+...+.++.+++++|.+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            345556666654 234321    2223445555666666655544221    11223345555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.84  E-value=0.00058  Score=62.72  Aligned_cols=12  Identities=17%  Similarity=0.077  Sum_probs=6.9

Q ss_pred             CCCCCcEeecCC
Q 036729          112 QLQNLRILLLYS  123 (970)
Q Consensus       112 ~l~~L~~L~Ls~  123 (970)
                      +.+.|++|+|++
T Consensus        15 ~~~~L~~L~L~~   26 (166)
T d1io0a_          15 NDPDLEEVNLNN   26 (166)
T ss_dssp             TCTTCCEEECTT
T ss_pred             cCCCCcEEEcCC
Confidence            445666666654