Citrus Sinensis ID: 036746

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MSWLIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEcccccccccccccccEEEccccccccccccccccccccccEEccccEEEEcccccccccccccEEEccccccEEEcccccccccccccccccccccEEcccccHHcccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccEEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEE
Coil and Loop (DISEMBL)
MSWLIFSFQALAFCfsvpeflgasafsvsgnETDRAALLEFKSKITNdalgvlgswndSIHFCQwygvtcspryqrvtildlqnlklvgtlsphignlsflqkldlrnnsftnaippqigHLRRLQILYLQINsfdgeipastsncsNLLVVSLALNHLVgkipsefgslsklQFLSTTANNlignipsslgnlsslrglslsrngfygsipdtfgglkNLVNLSLVVNnlsgtippsifnissiqtfdvgstyiegempldlgttlpnlrifsitgnqft
Flexible Loop (DISEMBL)
MSWLIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMpldlgttlpnlrifsitgnqft
Low Complexity Region (SEG)
MSWLIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPsslgnlsslrglslsrngFYGSIPDTFGGLKnlvnlslvvnnlsGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT
Disordered region (IsUnstruct)
**WLIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT*****
Disordered Region (DISOPRED)
MSWLIFSFQALAFCFSVPEFLGASAFS***NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT
Disordered Region (DISEMBL)
MSWLIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT
Disordered Region (DISPRO)
MSWLIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWLIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.882	0.245	0.470	2e-56
C0LGT6	1031	LRR receptor-like serine/	no	no	0.960	0.261	0.472	9e-56
Q9SD62	1025	Putative receptor-like pr	no	no	0.797	0.218	0.462	8e-50
Q9FL28	1173	LRR receptor-like serine/	no	no	0.978	0.234	0.358	8e-38
Q9C9H7	847	Receptor-like protein 12	no	no	0.886	0.293	0.366	4e-35
Q9LP24	1120	Probable leucine-rich rep	no	no	0.861	0.216	0.370	3e-34
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.918	0.246	0.343	3e-34
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.875	0.223	0.375	1e-33
O49545	1003	Leucine-rich repeat recep	no	no	0.918	0.257	0.329	2e-32
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.918	0.257	0.335	3e-32

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/251 (47%), Positives = 154/251 (61%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGT 90
           +ETDR ALL+FKS+++ D   VL SWN S   C W GVTC  + +RVT L+L  L+L G 
Sbjct: 22  DETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGV 81

Query: 91  LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLL 150
           +SP IGNLSFL  LDL  N F   IP ++G L RL+ L + IN   G IP    NCS LL
Sbjct: 82  ISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLL 141

Query: 151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS 210
            + L  N L G +PSE GSL+ L  L+   NN+ G +P+SLGNL+ L  L+LS N   G 
Sbjct: 142 NLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query: 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL 270
           IP     L  + +L LV NN SG  PP+++N+SS++   +G  +  G +  DLG  LPNL
Sbjct: 202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query: 271 RIFSITGNQFT 281
             F++ GN FT
Sbjct: 262 LSFNMGGNYFT 272

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  217 bits (552), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 166/275 (60%), Gaps = 5/275 (1%)

Query: 8   FQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKIT-NDALGVLGSWNDSIHFCQWY 66
           F AL     V  F  A  FS   NETD  ALLEFKS+++ N+   VL SWN S  FC W 
Sbjct: 9   FNALTLLLQVCIFAQAR-FS---NETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWI 64

Query: 67  GVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQ 126
           GVTC  R +RV  L+L   KL G +SP IGNLSFL+ L+L +NSF + IP ++G L RLQ
Sbjct: 65  GVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQ 124

Query: 127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN 186
            L +  N  +G IP+S SNCS L  V L+ NHL   +PSE GSLSKL  L  + NNL GN
Sbjct: 125 YLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGN 184

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ 246
            P+SLGNL+SL+ L  + N   G IPD    L  +V   + +N+ SG  PP+++NISS++
Sbjct: 185 FPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLE 244

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  +      G +  D G  LPNLR   +  NQFT
Sbjct: 245 SLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFT 279

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 116/251 (46%), Positives = 155/251 (61%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGT 90
            ETD+ ALLEFKS+++  +  VLGSWNDS+  C W GV C  +++RVT +DL  LKL G 
Sbjct: 37  EETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGV 96

Query: 91  LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLL 150
           +SP +GNLSFL+ L+L +N F  AIP ++G+L RLQ L +  N F G IP   SNCS+L 
Sbjct: 97  VSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLS 156

Query: 151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS 210
            + L+ NHL   +P EFGSLSKL  LS   NNL G  P+SLGNL+SL+ L    N   G 
Sbjct: 157 TLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216

Query: 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL 270
           IP     LK ++   + +N  +G  PP I+N+SS+    +      G +  D G+ LPNL
Sbjct: 217 IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276

Query: 271 RIFSITGNQFT 281
           +I  +  N FT
Sbjct: 277 QILYMGINSFT 287

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  157 bits (397), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/307 (35%), Positives = 148/307 (48%), Gaps = 32/307 (10%)

Query: 1   MSWLIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWN--D 58
           M  L  +F  L   F    F    A +    E +  AL  FK+ I+ND LGVL  W    
Sbjct: 1   MKLLSKTFLILTLTF----FFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIG 56

Query: 59  SIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ 118
           S+  C W G+TC      V++  L+  +L G LSP I NL++LQ LDL +NSFT  IP +
Sbjct: 57  SLRHCNWTGITCDSTGHVVSVSLLEK-QLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAE 115

Query: 119 IGHLRRLQILYLQINSF------------------------DGEIPASTSNCSNLLVVSL 154
           IG L  L  L L +N F                         G++P      S+L+++  
Sbjct: 116 IGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGF 175

Query: 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
             N+L GKIP   G L  LQ      N+L G+IP S+G L++L  L LS N   G IP  
Sbjct: 176 DYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD 235

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFS 274
           FG L NL +L L  N L G IP  I N SS+   ++    + G++P +LG  L  L+   
Sbjct: 236 FGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELG-NLVQLQALR 294

Query: 275 ITGNQFT 281
           I  N+ T
Sbjct: 295 IYKNKLT 301

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 140/281 (49%), Gaps = 32/281 (11%)

Query: 32  ETDRAALLEFKSKI-TNDALGVL----GSWNDSIHFCQWYGVTCSPR------------- 73
           +  R ALLEF+ +   N +  ++    G WN S   C W GVTC+ +             
Sbjct: 36  DDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNTF 95

Query: 74  -------------YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG 120
                         Q +  LDL N  L G +   +GNLS L  ++L  N F   IP  IG
Sbjct: 96  LNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIG 155

Query: 121 HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180
           +L +L+ L L  N   GEIP+S  N S L+ + L  N LVGKIP   G L +L+ LS  +
Sbjct: 156 NLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLAS 215

Query: 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
           NNLIG IPSSLGNLS+L  L L+ N   G +P + G L  L  +S   N+LSG IP S  
Sbjct: 216 NNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFA 275

Query: 241 NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           N++ +  F + S       P D+ +   NL  F ++ N F+
Sbjct: 276 NLTKLSIFVLSSNNFTSTFPFDM-SIFHNLEYFDVSYNSFS 315

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/275 (37%), Positives = 134/275 (48%), Gaps = 33/275 (12%)

Query: 37  ALLEFKSKITNDALGVLGSW------NDSIHFCQWYGVTCSPR----------------Y 74
           ALL++KS  TN +   L SW      N S     WYGV+C+ R                +
Sbjct: 36  ALLKWKSTFTNSS--KLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGTF 93

Query: 75  QRVTILDLQNLKLV--------GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQ 126
           Q    + L NL  V        GT+ P  GNLS L   DL  N  T  I P +G+L+ L 
Sbjct: 94  QDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLT 153

Query: 127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN 186
           +LYL  N     IP+   N  ++  ++L+ N L G IPS  G+L  L  L    N L G 
Sbjct: 154 VLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGV 213

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ 246
           IP  LGN+ S+  L+LS+N   GSIP T G LKNL+ L L  N L+G IPP I N+ S+ 
Sbjct: 214 IPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMT 273

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              +    + G +P  LG  L NL + S+  N  T
Sbjct: 274 NLALSQNKLTGSIPSSLG-NLKNLTLLSLFQNYLT 307

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 144/294 (48%), Gaps = 36/294 (12%)

Query: 7   SFQALAFCFSVPEFLG---------ASAFSVSGNETDRAALLEFKSKITND-ALGVLGSW 56
           SF+    C   P  L          + +F+VS    +  ALL++KS  TN  +   L SW
Sbjct: 14  SFKERMACKEKPRDLQVLLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSW 73

Query: 57  --NDSIHFC-QWYGVTCS-----------------------PRYQRVTILDLQNLKLVGT 90
              ++  FC  WYGV CS                            +T +DL   +  GT
Sbjct: 74  VNPNTSSFCTSWYGVACSLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGT 133

Query: 91  LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLL 150
           +SP  G  S L+  DL  N     IPP++G L  L  L+L  N  +G IP+     + + 
Sbjct: 134 ISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVT 193

Query: 151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS 210
            +++  N L G IPS FG+L+KL  L    N+L G+IPS +GNL +LR L L RN   G 
Sbjct: 194 EIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGK 253

Query: 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264
           IP +FG LKN+  L++  N LSG IPP I N++++ T  + +  + G +P  LG
Sbjct: 254 IPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLG 307

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/277 (37%), Positives = 138/277 (49%), Gaps = 31/277 (11%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWN--DSIHFCQWYGVTCSPRYQRVTILDLQNLKLV 88
           NE  R  LLEFK+   ND+ G L SWN  DS + C W G+ C+   + VT +DL  + L 
Sbjct: 25  NEEGRV-LLEFKA-FLNDSNGYLASWNQLDS-NPCNWTGIACT-HLRTVTSVDLNGMNLS 80

Query: 89  GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSN 148
           GTLSP I  L  L+KL++  N  +  IP  +   R L++L L  N F G IP   +    
Sbjct: 81  GTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIIT 140

Query: 149 LLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY 208
           L  + L  N+L G IP + G+LS LQ L   +NNL G IP S+  L  LR +   RNGF 
Sbjct: 141 LKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFS 200

Query: 209 GSIPDTFGG------------------------LKNLVNLSLVVNNLSGTIPPSIFNISS 244
           G IP    G                        L+NL +L L  N LSG IPPS+ NIS 
Sbjct: 201 GVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISR 260

Query: 245 IQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           ++   +   Y  G +P ++G      R++  T NQ T
Sbjct: 261 LEVLALHENYFTGSIPREIGKLTKMKRLYLYT-NQLT 296

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 137/288 (47%), Gaps = 30/288 (10%)

Query: 23  ASAFSVSGNETDRAALLEFKSKIT---NDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTI 79
           +  F+ S   ++  ALL  K+ +T   +D    L SW  S  FC W GVTC    + VT 
Sbjct: 14  SHTFTASRPISEFRALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTS 73

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD--- 136
           LDL  L L GTLSP + +L  LQ L L  N  +  IPP+I  L  L+ L L  N F+   
Sbjct: 74  LDLSGLNLSGTLSPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSF 133

Query: 137 ----------------------GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ 174
                                 G++P S +N + L  + L  N+  GKIP  +GS   ++
Sbjct: 134 PDEISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIE 193

Query: 175 FLSTTANNLIGNIPSSLGNLSSLRGLSLS-RNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
           +L+ + N L+G IP  +GNL++LR L +   N F   +P   G L  LV        L+G
Sbjct: 194 YLAVSGNELVGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTG 253

Query: 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            IPP I  +  + T  +      G +  +LG TL +L+   ++ N FT
Sbjct: 254 EIPPEIGKLQKLDTLFLQVNVFSGPLTWELG-TLSSLKSMDLSNNMFT 300

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 138/286 (48%), Gaps = 28/286 (9%)

Query: 23  ASAFSVSGNETDRAALLEFKSKITNDALG-VLGSWNDSIHFCQWYGVTCSPRYQRVTILD 81
           + +F+V+   T+  ALL  KS  T D    +L SWN S  FC W GVTC    + VT LD
Sbjct: 16  SHSFTVAKPITELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLD 75

Query: 82  LQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD----- 136
           L  L L GTLS  + +L  LQ L L  N  +  IPPQI +L  L+ L L  N F+     
Sbjct: 76  LSGLNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPD 135

Query: 137 --------------------GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFL 176
                               G++P S +N + L  + L  N+  GKIP+ +G+   L++L
Sbjct: 136 ELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYL 195

Query: 177 STTANNLIGNIPSSLGNLSSLRGLSLS-RNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235
           + + N L G IP  +GNL++LR L +   N F   +P   G L  LV        L+G I
Sbjct: 196 AVSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEI 255

Query: 236 PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           PP I  +  + T  +      G +  +LG  + +L+   ++ N FT
Sbjct: 256 PPEIGKLQKLDTLFLQVNAFTGTITQELG-LISSLKSMDLSNNMFT 300

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
224119102	1007	predicted protein [Populus trichocarpa]	0.957	0.267	0.567	1e-77
255575908	988	serine-threonine protein kinase, plant-t	0.960	0.273	0.565	4e-76
255569851	710	serine-threonine protein kinase, plant-t	0.957	0.378	0.552	5e-76
224119022	1021	predicted protein [Populus trichocarpa]	0.957	0.263	0.552	8e-76
224145847	418	predicted protein [Populus trichocarpa]	0.985	0.662	0.532	3e-75
255585471	963	serine-threonine protein kinase, plant-t	0.950	0.277	0.540	9e-75
255575904	834	serine-threonine protein kinase, plant-t	0.868	0.292	0.568	2e-74
255581223	1015	receptor-kinase, putative [Ricinus commu	0.889	0.246	0.564	3e-70
224113119	1065	predicted protein [Populus trichocarpa]	0.957	0.252	0.514	8e-69
224097752	1025	predicted protein [Populus trichocarpa]	0.960	0.263	0.5	2e-68

>gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/275 (56%), Positives = 195/275 (70%), Gaps = 6/275 (2%)

Query: 7   SFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWY 66
           +F  L  CF+      +SA S+  NETDR ALL+FKSKIT+D LG++  WN SIHFC W+
Sbjct: 14  AFVLLLLCFT------SSALSIGRNETDRLALLDFKSKITHDPLGIMRLWNSSIHFCHWF 67

Query: 67  GVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQ 126
           GVTCS ++QRV +LDLQ+LKL G++SP+IGNLSFL+ L L++NSF++ IP QIGHL RLQ
Sbjct: 68  GVTCSQKHQRVAVLDLQSLKLSGSVSPYIGNLSFLRNLYLQHNSFSHEIPAQIGHLHRLQ 127

Query: 127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN 186
           IL L  NSF GEIPAS S+  NL+ + L  N L G+IP EFGS  KL  L    NNL+G 
Sbjct: 128 ILALHNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLYIDDNNLVGT 187

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ 246
           IP SLGN+SSL+ L L  N  +G++P T   L NL  LSL  N  SGTIPPS+ N+SS++
Sbjct: 188 IPPSLGNISSLQELWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPPSMLNLSSLR 247

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           TF VG  + +G +P DLG +LPNL  FSI  NQFT
Sbjct: 248 TFQVGLNHFQGNLPPDLGISLPNLEFFSIYSNQFT 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575908|ref|XP_002528851.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531702|gb|EEF33525.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  290 bits (743), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 155/274 (56%), Positives = 191/274 (69%), Gaps = 4/274 (1%)

Query: 8   FQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYG 67
           FQ L+F      F    A   + NETDR ALLEFK KI +D LG++ SWN S+HFCQW+G
Sbjct: 24  FQLLSFAVLPAAF----AMRSANNETDRLALLEFKDKIADDPLGMMSSWNSSLHFCQWHG 79

Query: 68  VTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQI 127
           VTC  R+QRVT+LDL +LKL G++SP++GNLSFL+KL L NNSF++ IPPQ GHLRRLQI
Sbjct: 80  VTCGRRHQRVTMLDLGSLKLSGSISPYVGNLSFLRKLYLENNSFSHDIPPQSGHLRRLQI 139

Query: 128 LYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNI 187
           L L  NSF GEIP + S CSNL+ + L  N LVGKIPS+  SL KL+      NNLIG I
Sbjct: 140 LSLYNNSFGGEIPPNISACSNLVYLYLDGNKLVGKIPSQLTSLMKLKEFFFGRNNLIGTI 199

Query: 188 PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT 247
           P SLGNLSSL  LS   N  +G +P++ G L NL  L+L  N  SGTIP S+FNISSI  
Sbjct: 200 PPSLGNLSSLWTLSGDTNKLHGVLPESLGRLTNLKYLALFENRFSGTIPSSVFNISSIVH 259

Query: 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            DV   +++G +P+ LG +LP L+  SI+ NQFT
Sbjct: 260 IDVEGNHLQGTLPMSLGISLPQLQFISISSNQFT 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569851|ref|XP_002525889.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223534803|gb|EEF36493.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 152/275 (55%), Positives = 194/275 (70%), Gaps = 6/275 (2%)

Query: 12  AFCFSVP-----EFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWY 66
           +FCF V       F+ AS+ + +GNETDR ALLEF++KI  D LGV  SWND++ FC+W 
Sbjct: 16  SFCFHVVALLVCNFIMASS-ATTGNETDRLALLEFRAKINGDPLGVFNSWNDTLQFCEWR 74

Query: 67  GVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQ 126
           GVTC  R+QRVT LDLQ L+L G++SPH+GNLSFL++L L+NNSF+ +IPPQIG LRRLQ
Sbjct: 75  GVTCGRRHQRVTKLDLQALRLSGSISPHVGNLSFLRELYLQNNSFSQSIPPQIGRLRRLQ 134

Query: 127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN 186
            L+L  NS  GEIP + S CSNL+ + + +N L G IP E G LSK+Q +S   N+L G+
Sbjct: 135 ELFLNTNSLRGEIPPNISGCSNLVRIQVQVNQLEGSIPMEIGFLSKVQNISFGNNHLTGS 194

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ 246
           IP SLGNLSSL+ L  S N F GS+P T G L+NL+ L L  N  SG IP SIFN+SSI 
Sbjct: 195 IPPSLGNLSSLKALYASDNNFSGSLPPTLGQLENLMLLQLSNNEFSGIIPASIFNLSSIL 254

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            FD+ S    G +P +LG   PN++ FSI+ NQF+
Sbjct: 255 AFDIRSNRFTGYLPSELGNNFPNIKFFSISLNQFS 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (740), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 152/275 (55%), Positives = 192/275 (69%), Gaps = 6/275 (2%)

Query: 12  AFCFSVPEFLGASAFSVS----GNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYG 67
           AFCF    FL  S  SV+     NETD  AL++FK+KI +D LG++ SWN +IHFCQW+G
Sbjct: 5   AFCFRSFVFL-LSLISVTCSDYTNETDLLALIQFKNKIVDDPLGIMSSWNSTIHFCQWHG 63

Query: 68  VTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQI 127
           V+C  R+QRV +L LQ+LKL GT+SPHIGNLSFL++L L+NNSF + IPPQ+G LR LQI
Sbjct: 64  VSCGRRHQRVRVLALQSLKLSGTISPHIGNLSFLRELHLQNNSFFHEIPPQVGRLRSLQI 123

Query: 128 LYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNI 187
             L  NS  G+IP S S+CSNL+ + +  N+L G+IP E GSL KL+ L+   N L G I
Sbjct: 124 FSLHNNSISGQIPPSISDCSNLISIKIEFNNLTGEIPMELGSLLKLKNLTLEVNGLTGTI 183

Query: 188 PSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ 246
           P SLGNLSSL  L L +N   +G++P T G LKNL  L+L+ N LSG IPPSIFN+SS+ 
Sbjct: 184 PPSLGNLSSLEILRLEKNKILFGNVPSTLGKLKNLRILNLMDNRLSGVIPPSIFNLSSLT 243

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             D+G     G +P D+G +LPNL  FSI  NQFT
Sbjct: 244 ALDIGFNLFHGNLPSDIGISLPNLEFFSIASNQFT 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145847|ref|XP_002336269.1| predicted protein [Populus trichocarpa] gi|222833133|gb|EEE71610.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/278 (53%), Positives = 194/278 (69%), Gaps = 1/278 (0%)

Query: 5   IFSFQALAF-CFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFC 63
           I++F  L+F    VP F   +   ++ NETD+ AL+EFK+ ITND LGVL SWN+SIHFC
Sbjct: 13  IYTFLLLSFPGLQVPCFSAEATARIAKNETDQLALVEFKTHITNDPLGVLRSWNNSIHFC 72

Query: 64  QWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLR 123
           QW+GV C  R+QRV  LDL + KL G +SPH+GNLSFL+ LDLRNNS +  IPP++G+L 
Sbjct: 73  QWHGVLCGRRHQRVIALDLGSYKLAGYISPHVGNLSFLRLLDLRNNSLSQEIPPELGNLS 132

Query: 124 RLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL 183
           RL+ LYL  NS  GEIP++ S C NL+   +  N LVGKIP+EF +LSKL+     ANNL
Sbjct: 133 RLKYLYLNNNSLSGEIPSNVSFCFNLIHFLVNWNRLVGKIPAEFATLSKLEMFFIHANNL 192

Query: 184 IGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS 243
            G IP + GNL+SL+  S ++N   GSIP T G L +L +++L  N LSG+IPPS FN+S
Sbjct: 193 TGGIPITFGNLTSLQRFSATQNYIGGSIPATIGKLASLTHIALSGNRLSGSIPPSFFNLS 252

Query: 244 SIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           SI  FD+    +EG +P +LG TLPNL+   ++ NQFT
Sbjct: 253 SIIAFDIAYNQLEGTLPSNLGITLPNLQTLGLSANQFT 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  286 bits (731), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/272 (54%), Positives = 191/272 (70%), Gaps = 5/272 (1%)

Query: 10  ALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVT 69
            L  CFS       ++ ++SGNETD  ALLEFKSKIT+D   VL SWN++IHFCQW GVT
Sbjct: 21  VLILCFS-----STTSSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQGVT 75

Query: 70  CSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILY 129
           C   ++RVT+LDL +LK+ G++SP+IGNLSFL+ L+++NNSF + IP QIG+LRRL+ L 
Sbjct: 76  CGLLHRRVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLEELR 135

Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS 189
           L  NS  G+IP + S CSNL+ +SL  N L G +P E G LS LQ LS   N L G+IP 
Sbjct: 136 LNNNSVGGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLSIFGNKLTGSIPH 195

Query: 190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFD 249
           SLGNLS L+ LSL+ N   G +P++ G L+NL  LSL  N LSGTIP S+FN+SSI+  D
Sbjct: 196 SLGNLSQLQRLSLAENRMVGEVPNSLGWLRNLTFLSLRSNRLSGTIPSSLFNLSSIRNLD 255

Query: 250 VGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +G     G +P D+G  LPN+R F+I+ N+FT
Sbjct: 256 IGENNFHGNLPSDIGFLLPNIRWFAISSNEFT 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575904|ref|XP_002528849.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531700|gb|EEF33523.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/257 (56%), Positives = 186/257 (72%)

Query: 25  AFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQN 84
           A   + N+TDR ALL+FK KIT+D LGV+ SWN S+HFC+WYG+TCS R+QRVT LDL +
Sbjct: 37  AIGNANNQTDRLALLDFKDKITDDPLGVVSSWNRSLHFCKWYGITCSRRHQRVTRLDLSS 96

Query: 85  LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTS 144
           LKL G++SP++GNLSFL++L L NNSF+  IPPQIGHLRRLQ L L  NS  GEIP++ S
Sbjct: 97  LKLSGSISPYVGNLSFLRELYLENNSFSYEIPPQIGHLRRLQSLSLYNNSISGEIPSNIS 156

Query: 145 NCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSR 204
            CSNL+ + L  N+LVG+IP E  SL KL++     NNLIG IP SL NLSS+   S  R
Sbjct: 157 ACSNLVYLYLDGNNLVGEIPEELTSLMKLEYFFLGKNNLIGTIPQSLRNLSSIDTFSAYR 216

Query: 205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264
           N  +G +P++FG L NL  L+L  N  SG IP SIFN+SSI++ DVG  ++ G +P+ L 
Sbjct: 217 NKLHGVLPESFGRLMNLRILTLYDNQFSGNIPSSIFNLSSIESIDVGINHLHGTLPMTLV 276

Query: 265 TTLPNLRIFSITGNQFT 281
            +LP+L  FSI  NQFT
Sbjct: 277 ISLPHLNFFSIGQNQFT 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581223|ref|XP_002531424.1| receptor-kinase, putative [Ricinus communis] gi|223528974|gb|EEF30966.1| receptor-kinase, putative [Ricinus communis]

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/257 (56%), Positives = 187/257 (72%)

Query: 24  SAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQ 83
           +A  ++GN TDR ALL+FK+KIT+D LG +  WNDS HFCQWYGVTCS R+QRV IL+L+
Sbjct: 24  AACVINGNLTDRLALLDFKAKITDDPLGFMPLWNDSTHFCQWYGVTCSRRHQRVAILNLR 83

Query: 84  NLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST 143
           +L+L G++SPHIGNLSFL+ L L+NNSF++ IPP++G LRRLQ L L  NS  G IP++ 
Sbjct: 84  SLQLAGSISPHIGNLSFLRDLYLQNNSFSHGIPPEVGRLRRLQRLRLSNNSLTGNIPSNI 143

Query: 144 SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLS 203
           S CS L  +  A N L G+IP E   L+KLQ +S   N   G+IP S+GNLSSL+ LS  
Sbjct: 144 SACSKLSEIYFAYNQLEGEIPEELSLLAKLQVISIQKNYFSGSIPPSIGNLSSLQVLSAP 203

Query: 204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDL 263
            N   G+IPD  G L NL+ +SL VNNLSGTIPPSI+N+SSI T ++    I+G +P +L
Sbjct: 204 ENYLSGNIPDAIGQLNNLIFISLSVNNLSGTIPPSIYNLSSINTLNIVYNQIQGRLPSNL 263

Query: 264 GTTLPNLRIFSITGNQF 280
           G TLPNL++F+I  N F
Sbjct: 264 GITLPNLQVFAIARNDF 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113119|ref|XP_002316397.1| predicted protein [Populus trichocarpa] gi|222865437|gb|EEF02568.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 144/280 (51%), Positives = 181/280 (64%), Gaps = 11/280 (3%)

Query: 3   W-LIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIH 61
           W L F    L+F FS+ +          GNETD  +LL  K +IT+D LG L SWN+S H
Sbjct: 12  WPLFFLIIQLSFSFSLAQ----------GNETDIFSLLALKHQITDDPLGKLSSWNESTH 61

Query: 62  FCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGH 121
           FC+W GVTC  ++QRV  LDLQ+ KL G+LSPH+GN+SFL+ L+L NNSF   IP ++G 
Sbjct: 62  FCEWSGVTCGKKHQRVVQLDLQSCKLSGSLSPHVGNMSFLRTLNLENNSFGQNIPQELGS 121

Query: 122 LRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN 181
           L RLQ L L  NSF GEIPA+ S CSNLL + L  N+L GK+P+EFGSLSKL+      N
Sbjct: 122 LFRLQALVLTNNSFSGEIPANISRCSNLLSLELEGNNLTGKLPAEFGSLSKLKAFYFPRN 181

Query: 182 NLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
           NL G IP + GNLS +  +   +N   G IP + G LK L + S   NNLSGTIP SI+N
Sbjct: 182 NLFGEIPPAYGNLSHIEEIQGGQNNLQGDIPKSIGKLKRLKHFSFGTNNLSGTIPTSIYN 241

Query: 242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +SS+  F V +  + G +P DLG TLPNL IF I   QF+
Sbjct: 242 LSSLTHFSVPANQLHGSLPRDLGLTLPNLEIFRIHTCQFS 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/280 (50%), Positives = 190/280 (67%), Gaps = 10/280 (3%)

Query: 3   WLIF-SFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIH 61
           WL+F     L   FS+P           GNETDR +LL  KS+ITND  G+L SWN+S+H
Sbjct: 12  WLLFLQIIQLPIPFSLP---------TGGNETDRLSLLALKSQITNDPFGMLSSWNESLH 62

Query: 62  FCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGH 121
           FC W GV C  R++RV  +DL + +LVG+LSPHIGNLSFL+ L L NN F++ IP ++GH
Sbjct: 63  FCDWSGVICGKRHRRVVEIDLHSAQLVGSLSPHIGNLSFLRILKLENNRFSHNIPQELGH 122

Query: 122 LRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN 181
           L RL++L L+ N+FDG+IP + S+CSNLL++SL+ N+L GK+P E GSLSKLQ      N
Sbjct: 123 LFRLRMLSLENNTFDGKIPVNISHCSNLLILSLSGNNLTGKLPIELGSLSKLQVFFFQFN 182

Query: 182 NLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
            L+G IPSS GNLS++  +  + N   G IP++ G LK+L + S   NN++G IPPSI+N
Sbjct: 183 YLVGGIPSSFGNLSAIIQIFGAGNYLQGGIPNSIGQLKSLKSFSFGRNNMTGMIPPSIYN 242

Query: 242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +SS+  F V    + G +P DLG TLPNL I  ++ N+F+
Sbjct: 243 LSSLMRFAVPVNQLHGNLPPDLGLTLPNLEILLMSFNRFS 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.975	0.265	0.430	5.7e-49
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.889	0.243	0.424	3.5e-46
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.893	0.248	0.406	2.9e-44
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.939	0.261	0.401	2.9e-44
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.893	0.248	0.394	1.1e-41
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.879	0.303	0.357	9e-33
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.957	0.262	0.356	9.2e-33
TAIR|locus:2005629	1140	AT1G75640 [Arabidopsis thalian	0.946	0.233	0.342	3.2e-30
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.914	0.219	0.334	3.4e-30
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.911	0.255	0.342	1.3e-28

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.7e-49, P = 5.7e-49
 Identities = 121/281 (43%), Positives = 149/281 (53%)

Query:     4 LIFS--FQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKIT-NDALGVLGSWNDSI 60
             L FS  F AL     V  F  A  FS   NETD  ALLEFKS+++ N+   VL SWN S 
Sbjct:     3 LSFSLVFNALTLLLQVCIFAQAR-FS---NETDMQALLEFKSQVSENNKREVLASWNHSS 58

Query:    61 HFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG 120
              FC W GVTC  R +RV  L+L   KL G +SP IGNLSFL+ L+L +NSF + IP ++G
Sbjct:    59 PFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVG 118

Query:   121 HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA 180
              L RLQ L +  N  +G IP+S SNCS L  V L+ NHL   +PSE GSLSKL  L  + 
Sbjct:   119 RLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSK 178

Query:   181 NNLIGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIF 240
             NNL GN P                    G IPD    L              G  PP+++
Sbjct:   179 NNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALY 238

Query:   241 NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             NISS+++  +      G +  D G  LPNLR   +  NQFT
Sbjct:   239 NISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFT 279

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.5e-46, P = 3.5e-46
 Identities = 106/250 (42%), Positives = 137/250 (54%)

Query:    32 ETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTL 91
             ETD+ ALLEFKS+++  +  VLGSWNDS+  C W GV C  +++RVT +DL  LKL G +
Sbjct:    38 ETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVV 97

Query:    92 SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV 151
             SP +GNLSFL+ L+L +N F  AIP ++G+L RLQ L +  N F G IP   SNCS+L  
Sbjct:    98 SPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLST 157

Query:   152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXXXXFYGSI 211
             + L+ NHL   +P EFGSLSKL  LS   NNL G  P                    G I
Sbjct:   158 LDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEI 217

Query:   212 PDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLR 271
             P     LK             G  PP I+N+SS+    +      G +  D G+ LPNL+
Sbjct:   218 PGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNLQ 277

Query:   272 IFSITGNQFT 281
             I  +  N FT
Sbjct:   278 ILYMGINSFT 287

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.9e-44, P = 2.9e-44
 Identities = 102/251 (40%), Positives = 133/251 (52%)

Query:    31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGT 90
             +ETDR ALL+FKS+++ D   VL SWN S   C W GVTC  + +RVT L+L  L+L G 
Sbjct:    22 DETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGV 81

Query:    91 LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLL 150
             +SP IGNLSFL  LDL  N F   IP ++G L RL+ L + IN   G IP    NCS LL
Sbjct:    82 ISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLL 141

Query:   151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXXXXFYGS 210
              + L  N L G +PSE GSL+ L  L+   NN+ G +P                    G 
Sbjct:   142 NLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query:   211 IPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL 270
             IP     L              G  PP+++N+SS++   +G  +  G +  DLG  LPNL
Sbjct:   202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query:   271 RIFSITGNQFT 281
               F++ GN FT
Sbjct:   262 LSFNMGGNYFT 272

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.9e-44, P = 2.9e-44
 Identities = 108/269 (40%), Positives = 146/269 (54%)

Query:    11 LAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTC 70
             L   FS    LGA  F+   +ETDR ALLEFKS+++     VL SWN+S   C W  VTC
Sbjct:     5 LLLSFSAHLLLGADGFT---DETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTC 61

Query:    71 SPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL 130
               +++RVT L+L  L+L G +SP IGN+SFL  LDL +N+F   IP ++G+L RL+ LY+
Sbjct:    62 GRKHKRVTHLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYM 121

Query:   131 QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXX 190
               NS +G IPA+ SNCS LL + L  N L   +PSE GSL+KL  L    NNL G +P  
Sbjct:   122 AFNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRS 181

Query:   191 XXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQT-FD 249
                               G +PD    L              G  PP+I+N+S+++  F 
Sbjct:   182 LGNLTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFL 241

Query:   250 VGSTYIEGEMPLDLGTTLPNLRIFSITGN 278
              GS +  G +  D G  LPN+R  ++  N
Sbjct:   242 FGSGF-SGSLKPDFGNLLPNIRELNLGEN 269

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 99/251 (39%), Positives = 131/251 (52%)

Query:    31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGT 90
             +E+DR ALLE KS+++      L +WN+S   C W  V C  +++RVT LDL  L+L G 
Sbjct:    22 DESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGV 81

Query:    91 LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLL 150
             +SP IGNLSFL  LDL NNSF   IP ++G+L RL+ L +  N  +GEIPAS SNCS LL
Sbjct:    82 ISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLL 141

Query:   151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXXXXFYGS 210
              + L  N+L   +PSE GSL KL +L    N+L G  P                    G 
Sbjct:   142 YLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGE 201

Query:   211 IPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL 270
             IPD    L              G  PP+ +N+SS++   +      G +  D G  LPN+
Sbjct:   202 IPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNI 261

Query:   271 RIFSITGNQFT 281
                S+ GN  T
Sbjct:   262 HELSLHGNFLT 272

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 367 (134.2 bits), Expect = 9.0e-33, P = 9.0e-33
 Identities = 90/252 (35%), Positives = 120/252 (47%)

Query:    34 DRAALLEFKSKITNDALGVLGSWNDSIH--FCQWYGVTCSPRY-QRVTILDLQNLKLVGT 90
             D  ALL FKS +       L SWN S H   C W GV C  R+  RV  L L++  L G 
Sbjct:    34 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGI 93

Query:    91 LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLL 150
             +SP +GNLSFL+ L L +N  +  IP ++  L RLQ L L  NS  GEIPA+  N ++L 
Sbjct:    94 ISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLS 153

Query:   151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXXXXXXFYGS 210
             V+ L  N L G IPS  G L+ L  L+   N L G+IP                    G+
Sbjct:   154 VLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGA 213

Query:   211 IPDTFGGLKXXXXXXXXXXXXXGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPN 269
             IPD    +              GT+P + F N+ S+Q   +      G +P  +G    N
Sbjct:   214 IPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIGNA-SN 272

Query:   270 LRIFSITGNQFT 281
             + IF+I  N F+
Sbjct:   273 ISIFTIGLNSFS 284

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 369 (135.0 bits), Expect = 9.2e-33, P = 9.2e-33
 Identities = 101/283 (35%), Positives = 134/283 (47%)

Query:     5 IFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIH--F 62
             +  F AL  C S  +  G +A    G+E    ALL FKS +       L SWN S H   
Sbjct:    10 VLLFSALLLCPSSSDDDGDAA----GDEL---ALLSFKSSLLYQGGQSLASWNTSGHGQH 62

Query:    63 CQWYGVTCSPRYQR----VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ 118
             C W GV C  R +R    V  L L++  L G +SP +GNLSFL++LDL +N  +  IPP+
Sbjct:    63 CTWVGVVCGRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELDLGDNYLSGEIPPE 122

Query:   119 IGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFG-SLSKLQFLS 177
             +  L RLQ+L L  NS  G IPA+   C+ L  + L+ N L G IP E G SL  L  L 
Sbjct:   123 LSRLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLY 182

Query:   178 TTANNLIGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPP 237
                N L G IP                    G+IP + G L              G IP 
Sbjct:   183 LYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPN 242

Query:   238 SIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280
             SI+N+SS++ F V    + G +P +   TL  L +  +  N+F
Sbjct:   243 SIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDMGTNRF 285

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2005629 AT1G75640 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 3.2e-30, P = 3.2e-30
 Identities = 96/280 (34%), Positives = 133/280 (47%)

Query:     4 LIFSFQALAFCFSVPEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHF- 62
             +IF     A  FS   F   SA S   +ET   AL  FK  + +D LG L SWN S    
Sbjct:     5 VIFFLHFAAIFFS--RFHHTSAIS---SETQ--ALTSFKLSL-HDPLGALESWNQSSPSA 56

Query:    63 -CQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGH 121
              C W+GV+C     RV  L L  L L G LSP +G L+ L+KL L  N    A+P  +  
Sbjct:    57 PCDWHGVSCFSG--RVRELRLPRLHLTGHLSPRLGELTQLRKLSLHTNDINGAVPSSLSR 114

Query:   122 LRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN 181
                L+ LYL  NSF G+ P    N  NL V++ A N L G + S+      L+++  ++N
Sbjct:   115 CVFLRALYLHYNSFSGDFPPEILNLRNLQVLNAAHNSLTGNL-SDVTVSKSLRYVDLSSN 173

Query:   182 NLIGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFN 241
              + G IP                  F G IP T G L+             GTIP ++ N
Sbjct:   174 AISGKIPANFSADSSLQLINLSFNHFSGEIPATLGQLQDLEYLWLDSNQLQGTIPSALAN 233

Query:   242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              SS+  F V   ++ G +P+ LGT + +L++ S++ N FT
Sbjct:   234 CSSLIHFSVTGNHLTGLIPVTLGT-IRSLQVISLSENSFT 272

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 3.4e-30, P = 3.4e-30
 Identities = 89/266 (33%), Positives = 124/266 (46%)

Query:    20 FLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWN--DSIHFCQWYGVTCSPRYQRV 77
             F G  A +    E +  AL  FK+ I+ND LGVL  W    S+  C W G+TC      V
Sbjct:    17 FFGI-ALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVV 75

Query:    78 TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             ++  L+  +L G LSP I NL++LQ LDL +NSFT  IP +IG L  L  L L +N F G
Sbjct:    76 SVSLLEK-QLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSG 134

Query:   138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXX 197
              IP+      N+  + L  N L G +P E    S L  +    NNL G IP         
Sbjct:   135 SIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHL 194

Query:   198 XXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFDVGSTYIEG 257
                        GSIP + G L              G IP    N+ ++Q+  +    +EG
Sbjct:   195 QMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEG 254

Query:   258 EMPLDLG--TTLPNLRIFSITGNQFT 281
             ++P ++G  ++L  L ++    NQ T
Sbjct:   255 DIPAEIGNCSSLVQLELYD---NQLT 277

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.3e-28, P = 1.3e-28
 Identities = 89/260 (34%), Positives = 118/260 (45%)

Query:    25 AFSVSGNETDRAALLEFKSKITNDALG-VLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQ 83
             +F+V+   T+  ALL  KS  T D    +L SWN S  FC W GVTC    + VT LDL 
Sbjct:    18 SFTVAKPITELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLS 77

Query:    84 NLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS- 142
              L L GTLS  + +L  LQ L L  N  +  IPPQI +L  L+ L L  N F+G  P   
Sbjct:    78 GLNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDEL 137

Query:   143 TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPXXXXXXXXXXXXXX 202
             +S   NL V+ L  N+L G +P    +L++L+ L    N   G IP              
Sbjct:   138 SSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAV 197

Query:   203 XXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGT-IPPSIFNISSIQTFDVGSTYIEGEMPL 261
                   G IP   G L                 +PP I N+S +  FD  +  + GE+P 
Sbjct:   198 SGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPP 257

Query:   262 DLGTTLPNLRIFSITGNQFT 281
             ++G  L  L    +  N FT
Sbjct:   258 EIGK-LQKLDTLFLQVNAFT 276

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-44
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-11
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  159 bits (404), Expect = 4e-44
 Identities = 102/291 (35%), Positives = 137/291 (47%), Gaps = 50/291 (17%)

Query: 38  LLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHI-- 95
           LL FKS I ND L  L +WN S   C W G+TC+    RV  +DL    + G +S  I  
Sbjct: 34  LLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIFR 91

Query: 96  ---------------------------------------------GNLSFLQKLDLRNNS 110
                                                        G++  L+ LDL NN 
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM 151

Query: 111 FTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSL 170
            +  IP  IG    L++L L  N   G+IP S +N ++L  ++LA N LVG+IP E G +
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 171 SKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230
             L+++    NNL G IP  +G L+SL  L L  N   G IP + G LKNL  L L  N 
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           LSG IPPSIF++  + + D+    + GE+P +L   L NL I  +  N FT
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFT 321

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  131 bits (331), Expect = 2e-34
 Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 1/202 (0%)

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI 139
           LDL N  L G +   IG+ S L+ LDL  N     IP  + +L  L+ L L  N   G+I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 140 PASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRG 199
           P       +L  + L  N+L G+IP E G L+ L  L    NNL G IPSSLGNL +L+ 
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEM 259
           L L +N   G IP +   L+ L++L L  N+LSG IP  +  + +++   + S    G++
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 260 PLDLGTTLPNLRIFSITGNQFT 281
           P+ L T+LP L++  +  N+F+
Sbjct: 325 PVAL-TSLPRLQVLQLWSNKFS 345

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  125 bits (316), Expect = 2e-32
 Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 1/208 (0%)

Query: 74  YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN 133
           +  + +LDL    LVG +   + NL+ L+ L L +N     IP ++G ++ L+ +YL  N
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 134 SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
           +  GEIP      ++L  + L  N+L G IPS  G+L  LQ+L    N L G IP S+ +
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253
           L  L  L LS N   G IP+    L+NL  L L  NN +G IP ++ ++  +Q   + S 
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              GE+P +LG    NL +  ++ N  T
Sbjct: 343 KFSGEIPKNLGKH-NNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  114 bits (288), Expect = 9e-29
 Identities = 73/202 (36%), Positives = 96/202 (47%), Gaps = 1/202 (0%)

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI 139
           LDL    L G +   +GNL  LQ L L  N  +  IPP I  L++L  L L  NS  GEI
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 140 PASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRG 199
           P       NL ++ L  N+  GKIP    SL +LQ L   +N   G IP +LG  ++L  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEM 259
           L LS N   G IP+      NL  L L  N+L G IP S+    S++   +      GE+
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 260 PLDLGTTLPNLRIFSITGNQFT 281
           P +  T LP +    I+ N   
Sbjct: 421 PSEF-TKLPLVYFLDISNNNLQ 441

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  107 bits (269), Expect = 3e-26
 Identities = 67/179 (37%), Positives = 92/179 (51%)

Query: 87  LVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNC 146
           L G +   IG L+ L  LDL  N+ T  IP  +G+L+ LQ L+L  N   G IP S  + 
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG 206
             L+ + L+ N L G+IP     L  L+ L   +NN  G IP +L +L  L+ L L  N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 207 FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGT 265
           F G IP   G   NL  L L  NNL+G IP  + +  ++    + S  +EGE+P  LG 
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (252), Expect = 6e-24
 Identities = 72/207 (34%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
           Q++  LDL +  L G +   +  L  L+ L L +N+FT  IP  +  L RLQ+L L  N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
           F GEIP +    +NL V+ L+ N+L G+IP    S   L  L   +N+L G IP SLG  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254
            SLR + L  N F G +P  F  L  +  L +  NNL G I    +++ S+Q   +    
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281
             G +P   G+    L    ++ NQF+
Sbjct: 464 FFGGLPDSFGSK--RLENLDLSRNQFS 488

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 98.8 bits (246), Expect = 3e-23
 Identities = 73/216 (33%), Positives = 103/216 (47%), Gaps = 25/216 (11%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
           ++  +T+LDL    L G +   + +   L KL L +NS    IP  +G  R L+ + LQ 
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 133 NSFDGEIPA-------------STSNCS-----------NLLVVSLALNHLVGKIPSEFG 168
           NSF GE+P+             S +N             +L ++SLA N   G +P  FG
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 169 SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228
           S  +L+ L  + N   G +P  LG+LS L  L LS N   G IPD     K LV+L L  
Sbjct: 474 S-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 229 NNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264
           N LSG IP S   +  +   D+    + GE+P +LG
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.3 bits (237), Expect = 5e-22
 Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 1/179 (0%)

Query: 82  LQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA 141
           LQ+    G L      L  +  LD+ NN+    I  +   +  LQ+L L  N F G +P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLS 201
           S      L  + L+ N   G +P + GSLS+L  L  + N L G IP  L +   L  L 
Sbjct: 471 S-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP 260
           LS N   G IP +F  +  L  L L  N LSG IP ++ N+ S+   ++   ++ G +P
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 5e-21
 Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 83  QNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS 142
           QN KL G + P I +L  L  LDL +NS +  IP  +  L+ L+IL+L  N+F G+IP +
Sbjct: 269 QN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 143 TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSL 202
            ++   L V+ L  N   G+IP   G  + L  L  + NNL G IP  L +  +L  L L
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387

Query: 203 SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLD 262
             N   G IP + G  ++L  + L  N+ SG +P     +  +   D+ +  ++G +   
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN-S 446

Query: 263 LGTTLPNLRIFSITGNQF 280
               +P+L++ S+  N+F
Sbjct: 447 RKWDMPSLQMLSLARNKF 464

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.9 bits (223), Expect = 3e-20
 Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 1/166 (0%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
           +   V  LD+ N  L G ++    ++  LQ L L  N F   +P   G  +RL+ L L  
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSR 484

Query: 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG 192
           N F G +P    + S L+ + L+ N L G+IP E  S  KL  L  + N L G IP+S  
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPS 238
            +  L  L LS+N   G IP   G +++LV +++  N+L G++P +
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.3 bits (180), Expect = 1e-14
 Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 2/98 (2%)

Query: 144 SNCSNLLVVSLALNH--LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLS 201
           S      +  L L++  L G IP++   L  LQ ++ + N++ GNIP SLG+++SL  L 
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSI 239
           LS N F GSIP++ G L +L  L+L  N+LSG +P ++
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 35/93 (37%), Positives = 49/93 (52%)

Query: 100 FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHL 159
           F+  L L N      IP  I  LR LQ + L  NS  G IP S  + ++L V+ L+ N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 160 VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG 192
            G IP   G L+ L+ L+   N+L G +P++LG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 65  WYGVTC----SPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG 120
           W G  C    +     +  L L N  L G +   I  L  LQ ++L  NS    IPP +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 121 HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSL 170
            +  L++L L  NSF+G IP S    ++L +++L  N L G++P+  G  
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 63.1 bits (153), Expect = 3e-11
 Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 8/204 (3%)

Query: 76  RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF 135
            +  LDL + K+  +L   + NL  L+ LDL  N   + +P  + +L  L  L L  N  
Sbjct: 141 NLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 136 DGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
             ++P      S L  + L+ N ++ ++ S   +L  L  L   +NN + ++P S+GNLS
Sbjct: 199 -SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL-SNNKLEDLPESIGNLS 255

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSI-FNISSIQTFDVGSTY 254
           +L  L LS N    S   + G L NL  L L  N+LS  +P      +      ++  T 
Sbjct: 256 NLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Query: 255 IEGEMPLDLGTTLPNLRIFSITGN 278
              E+ L+      N+     T +
Sbjct: 314 KALELKLNSILLNNNILSNGETSS 337

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 31 NETDRAALLEFKSKITNDALGVLGSWNDS-IHFCQWYGVTCS 71
             DR ALL FKS +  D  G L SWN S    C W GVTC 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 199 GLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGE 258
           GL L   G  G IP+    L++L +++L  N++ G IPPS+ +I+S++  D+      G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 259 MPLDLGTTLPNLRIFSITGN 278
           +P  LG  L +LRI ++ GN
Sbjct: 482 IPESLG-QLTSLRILNLNGN 500

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHL-RRLQILYLQINSFD 136
             LDL   +L   +S  +  L+ L  LDL NN+ T+ IPP IG L   L+ L L  N   
Sbjct: 96  PSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKI- 152

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
             +P+   N  NL  + L+ N L   +P    +LS L  L  +  N I ++P  +  LS+
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS-GNKISDLPPEIELLSA 210

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256
           L  L LS N     +  +   LKNL  L L  NN    +P SI N+S+++T D+ +  I 
Sbjct: 211 LEELDLSNN-SIIELLSSLSNLKNLSGLEL-SNNKLEDLPESIGNLSNLETLDLSNNQIS 268

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
               +    +L NLR   ++GN  +
Sbjct: 269 S---ISSLGSLTNLRELDLSGNSLS 290

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.67
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.66
PLN03150	623	hypothetical protein; Provisional	99.63
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.45
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.4
PLN03150	623	hypothetical protein; Provisional	99.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.65
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.39
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.06
PRK15386	426	type III secretion protein GogB; Provisional	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.54
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.75
KOG4308	478	consensus LRR-containing protein [Function unknown	96.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.56
smart00370	26	LRR Leucine-rich repeats, outliers.	94.35
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.35
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.49
KOG4308	478	consensus LRR-containing protein [Function unknown	92.85
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.32
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.83
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.43
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.69
KOG4341	483	consensus F-box protein containing LRR [General fu	86.6
KOG4341	483	consensus F-box protein containing LRR [General fu	85.0
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.02

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.1e-33  Score=270.76  Aligned_cols=247  Identities=36%  Similarity=0.622  Sum_probs=161.6

Q ss_pred             CHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC
Q 036746           31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS  110 (281)
Q Consensus        31 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~  110 (281)
                      .+.|..++++|++.+. ++.....+|....++|.|.|+.|... ++++.|+++++++.+.++..+..+++|+.|++++|.
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence            3478899999999985 56667889988889999999999853 689999999999999999889999999999999999


Q ss_pred             CccCCchhcc-CCCCCCEEEccCccCcccCCC----------------------CCCCCCCCcEEEccCCCCCCCCCccc
Q 036746          111 FTNAIPPQIG-HLRRLQILYLQINSFDGEIPA----------------------STSNCSNLLVVSLALNHLVGKIPSEF  167 (281)
Q Consensus       111 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~~~~~~~~~l  167 (281)
                      +.+.+|..+. .+++|++|++++|.+++.+|.                      .++++++|++|++++|.+.+.+|..+
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  184 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL  184 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence            9877776654 777788877777777655443                      34444444444444444444444444


Q ss_pred             CCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcE
Q 036746          168 GSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT  247 (281)
Q Consensus       168 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  247 (281)
                      +++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|+.|++++|.+++.+|..+..+++|+.
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  264 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY  264 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence            44444455555444444444444445555555555555555445555555555555555555555555555555555555


Q ss_pred             EEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       248 L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      |++++|.+.+.+|..+. .+++|+.|++++|++
T Consensus       265 L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        265 LFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSL  296 (968)
T ss_pred             EECcCCeeeccCchhHh-hccCcCEEECcCCee
Confidence            55555555555555444 455555555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=3e-27  Score=229.13  Aligned_cols=205  Identities=36%  Similarity=0.582  Sum_probs=115.1

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            44555555555555555555666666666666666665555655666666666666666665555555556666666666


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+.
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence            66665555555555555666666655555555555555555555555555555555555555555555555555555545


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +|..+.++++|+.|++++|.+.+.+|..+. .+++|+.|++++|++
T Consensus       300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l  344 (968)
T PLN00113        300 IPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKF  344 (968)
T ss_pred             CChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCC
Confidence            555555555555555555555444444433 445555555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.1e-23  Score=182.15  Aligned_cols=205  Identities=20%  Similarity=0.200  Sum_probs=103.4

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.|++++|.++..--..|..+.+|..|.|+.|.++...+..|.++++|+.|+|..|++...-.-.|.++++|+.|.+
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            34555555555555444445555555555555555555444445555666666666655554222233444444444444


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ..|.+...-...|..|.++++|++..|.+...-...+..++.|+.|++++|.|....++.+...++|++|+++.|+++.-
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            44444433333444455555555555555433334445555555555555555544455555555555555555555544


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .+..+..+..|++|+|+.|.|. .+.+..+.++.+|++|||++|.+
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeE
Confidence            4444444444444444444444 34444444444444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-22  Score=176.03  Aligned_cols=206  Identities=22%  Similarity=0.281  Sum_probs=126.2

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++.+|-+...-...++.++.|+.|||+.|.++...-+.|+.-.++++|+|++|.|+..-...|..+.+|.+|.+
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            45666777776666555556666667777777777666444455666667777777777777555556666777777777


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|+++...+..|.++++|+.|++..|.+.-.---.|..+++|+.|.+..|.+...-...|..+.++++|++..|++...
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            77777744445566677777777777766433233455555555555555555533344455566666666666666544


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      -..++.++++|+.|++++|.|. .+..+-...+++|+.|+|++|+|+
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccc
Confidence            4455666666666666666666 333333335666666666666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.81  E-value=5.7e-22  Score=173.26  Aligned_cols=201  Identities=26%  Similarity=0.400  Sum_probs=134.8

Q ss_pred             CcEEEEEcCCCCcee-ecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCC-CCCCCCCcEE
Q 036746           75 QRVTILDLQNLKLVG-TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS-TSNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L  152 (281)
                      +++++++++.|++.. -+|+.+-.+..|+.|+|+.|++. ..|..+..-+++-+|+|++|+|. .+|.. +.+++-|-.|
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            556666666666532 24555666677777777777666 56666666666667777777766 55543 4566666677


Q ss_pred             EccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc-ccCCccCCCCCCCCEEEcccCcc
Q 036746          153 SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNNL  231 (281)
Q Consensus       153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l  231 (281)
                      ++++|++. .+|+.+..+..|++|.+++|.+....-..+..+++|++|.+++.+-+ ..+|.++..+.+|+.+|+++|.+
T Consensus       156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL  234 (1255)
T ss_pred             ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence            77777666 56666666677777777776654332334455666677777766544 34777778888888888888888


Q ss_pred             ccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          232 SGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       232 ~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      . .+|..+..+++|+.|+|++|+|+ ++..... ...+|+.|++|+|++|
T Consensus       235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt  281 (1255)
T KOG0444|consen  235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT  281 (1255)
T ss_pred             C-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc
Confidence            7 77888888888888888888887 5554444 4567788888888765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.81  E-value=3.6e-22  Score=148.33  Aligned_cols=176  Identities=29%  Similarity=0.473  Sum_probs=117.5

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.|.+++|.++ .+|+.++.+.+|+.|++.+|+++ .+|..++.+++|++|+++-|++. .+|.+|+.++.|+.|++
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            56677777777765 55666777777777777777776 56667777777777777777776 66777777777777777


Q ss_pred             cCCCCCC-CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          155 ALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       155 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      ++|.+.. .+|..|..|..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+++ 
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-  186 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-  186 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence            7776653 45666666667777777777665 56666777777777777777666 66667777777777777777776 


Q ss_pred             ccChhccCCCC---CcEEEcccCccc
Q 036746          234 TIPPSIFNISS---IQTFDVGSTYIE  256 (281)
Q Consensus       234 ~~p~~l~~l~~---L~~L~l~~n~i~  256 (281)
                      .+|+.++++.-   =+.+.+..|...
T Consensus       187 vlppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  187 VLPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence            56665554321   123444555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=8.8e-22  Score=146.30  Aligned_cols=164  Identities=32%  Similarity=0.550  Sum_probs=151.8

Q ss_pred             ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  174 (281)
                      +-.+.+++.|.++.|.++ .+|+.+..+.+|+.|++.+|+++ .+|.+++.+++|+.|+++-|++. .+|.+|+.+|.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            446788999999999999 67778999999999999999999 99999999999999999999998 8999999999999


Q ss_pred             EEecccccccc-CCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccC
Q 036746          175 FLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST  253 (281)
Q Consensus       175 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  253 (281)
                      +|++..|.+.. .+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            99999998853 58889999999999999999998 88999999999999999999998 88999999999999999999


Q ss_pred             cccccCChhhh
Q 036746          254 YIEGEMPLDLG  264 (281)
Q Consensus       254 ~i~~~~p~~~~  264 (281)
                      .++ .+|.++.
T Consensus       184 rl~-vlppel~  193 (264)
T KOG0617|consen  184 RLT-VLPPELA  193 (264)
T ss_pred             eee-ecChhhh
Confidence            999 7887664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=2.5e-21  Score=169.30  Aligned_cols=201  Identities=25%  Similarity=0.359  Sum_probs=128.8

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      ...++.||++.|++. ..|..+..-+++-.|+|++|+|.......|-++.-|-.|||++|++. .+|+.+..+..|++|.
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence            367888899888875 67777777788888888888887433344557788888888888887 7888888888888888


Q ss_pred             ccCCCCCC-------------------------CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc
Q 036746          154 LALNHLVG-------------------------KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       154 l~~n~~~~-------------------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      +++|.+..                         .+|..+..+.+|+.++++.|.+. .+|+.+.++.+|+.|++++|.++
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence            88886642                         23444444555555555555554 44555555555555555555555


Q ss_pred             ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccc-ccCChhhhhCCCCCCEEeccCccC
Q 036746          209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE-GEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~-~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                       .+--..+.+.+|++|++++|+++ .+|.++..+++|+.|.+.+|+++ ..+|..+. .+.+|+.+...+|++
T Consensus       259 -eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG-KL~~Levf~aanN~L  328 (1255)
T KOG0444|consen  259 -ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG-KLIQLEVFHAANNKL  328 (1255)
T ss_pred             -eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh-hhhhhHHHHhhcccc
Confidence             33333444455555555555555 55666666666666666666544 23555555 455666666665554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.77  E-value=9.7e-21  Score=157.13  Aligned_cols=204  Identities=23%  Similarity=0.281  Sum_probs=150.7

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC-ccCcccCC-CCCCCCCCCcEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI-NSFDGEIP-ASTSNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L  152 (281)
                      ...+.++++.|+++...+..|+.+++|+.|+|+.|.|+...|++|.+++++..|.+.+ |+|+ .+| ..|.++.+++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            6788999999999988888999999999999999999999999999999988877766 8998 555 467888888888


Q ss_pred             EccCCCCCCCCCcccCCCCCCcEEeccccccccCCCc-ccCCCCCCCEEEcccCcC------------------------
Q 036746          153 SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGF------------------------  207 (281)
Q Consensus       153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~------------------------  207 (281)
                      .+.-|++.-...+.|..++++..|.+.+|.+. .+++ .+..+..++.+.+..|.+                        
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            88888877666677777788877777777665 3333 455555555554443321                        


Q ss_pred             -------------------------------------cccCC-ccCCCCCCCCEEEcccCccccccChhccCCCCCcEEE
Q 036746          208 -------------------------------------YGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFD  249 (281)
Q Consensus       208 -------------------------------------~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~  249 (281)
                                                           .+.-| ..|.++++|++|++++|++++.-+.+|.+..++++|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence                                                 00111 2345677777777777777766667777777777777


Q ss_pred             cccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          250 VGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       250 l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      |..|+|. .+...++.++..|+.|++++|+||
T Consensus       305 L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  305 LTRNKLE-FVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             cCcchHH-HHHHHhhhccccceeeeecCCeeE
Confidence            7777776 566666667777777777777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=7e-21  Score=158.40  Aligned_cols=197  Identities=27%  Similarity=0.449  Sum_probs=113.5

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ..++++++.+|.+. .+|++++.+..++.++.+.|++. .+|..+..+.++..++.++|.+. .+|++++.+..+..++.
T Consensus        68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence            45677777777765 56666666666666666666666 55666666666666666666655 45555555544444444


Q ss_pred             cCCCCCCCCCccc-----------------------CCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccC
Q 036746          155 ALNHLVGKIPSEF-----------------------GSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI  211 (281)
Q Consensus       155 ~~n~~~~~~~~~l-----------------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  211 (281)
                      .+|+++ .+|+++                       -.|+.|++++...|-+. .+|+.++.+.+|..|++..|.+. .+
T Consensus       145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence            444444 333332                       23555666666655443 56666666666666677666665 44


Q ss_pred             CccCCCCCCCCEEEcccCccccccChhcc-CCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          212 PDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       212 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      | .|.+++.|.+++++.|.+. .+|.... .++++..||+.+|+++ +.|.++- -+.+|++||+|+|.+|
T Consensus       222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS  288 (565)
T ss_pred             C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc
Confidence            5 4555555555555555554 4444333 5555566666666655 5555554 3555666666665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=8.1e-21  Score=158.02  Aligned_cols=197  Identities=26%  Similarity=0.432  Sum_probs=168.2

Q ss_pred             cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc
Q 036746           76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  155 (281)
                      .+..+.++.|.+. .+.+.+.++..+..+++..|.+. ..|++++.+..++.++.++|++. .+|..+..+.++++++++
T Consensus        46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            4677889999876 45566889999999999999998 78889999999999999999999 999999999999999999


Q ss_pred             CCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCC-----------------------CCCCCEEEcccCcCcccCC
Q 036746          156 LNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN-----------------------LSSLRGLSLSRNGFYGSIP  212 (281)
Q Consensus       156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-----------------------l~~L~~L~l~~n~~~~~~p  212 (281)
                      +|.+. .+|+.++.+..+..++..+|++. ..|..+..                       ++.|++++...|-+. .+|
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence            99998 78889999999999988888876 44544444                       345556666666555 788


Q ss_pred             ccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          213 DTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       213 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ..++.+.+|+.|++.+|++. .+| .|.++..|++|+++.|.|. .+|++...+++++..||+.+|+++
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence            88888899999999999987 777 7788899999999999998 899999889999999999999974

>PLN03210 Resistant to P

Probab=99.71  E-value=2.6e-16  Score=154.47  Aligned_cols=81  Identities=25%  Similarity=0.262  Sum_probs=37.7

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.|++.++.+. .++..+..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+.++++|+.|++
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            44555555555543 3444444555555555554433223332 444445555555444433344444444444444444


Q ss_pred             cCC
Q 036746          155 ALN  157 (281)
Q Consensus       155 ~~n  157 (281)
                      ++|
T Consensus       689 ~~c  691 (1153)
T PLN03210        689 SRC  691 (1153)
T ss_pred             CCC
Confidence            443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.71  E-value=3.4e-16  Score=153.65  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=43.4

Q ss_pred             EEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746           77 VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL  156 (281)
Q Consensus        77 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  156 (281)
                      ++.|++.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|+.|+++++.....+| .+..+++|++|++++
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence            444444444432 333333 2344444444444443 333334444444444444433222333 234444444444444


Q ss_pred             CCCCCCCCcccCCCCCCcEEecccc
Q 036746          157 NHLVGKIPSEFGSLSKLQFLSTTAN  181 (281)
Q Consensus       157 n~~~~~~~~~l~~l~~L~~L~l~~n  181 (281)
                      |.....+|..+..+++|+.|++++|
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCC
Confidence            4433344444444444444444443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=9.5e-17  Score=149.03  Aligned_cols=180  Identities=26%  Similarity=0.439  Sum_probs=87.6

Q ss_pred             cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc
Q 036746           76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  155 (281)
                      .++.|++++|.+. .+|..+.  .+|++|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            4555555555554 3343332  35566666666555 3444332  34556666666555 4454432  356666666


Q ss_pred             CCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccccc
Q 036746          156 LNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI  235 (281)
Q Consensus       156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  235 (281)
                      +|++. .+|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.++ .+|..+  .++|+.|++++|.++ .+
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~L  340 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALT-SL  340 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCccc-cC
Confidence            66665 3454332  35666666666655 2333221  23444444444444 223222  134555555555554 23


Q ss_pred             ChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          236 PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       236 p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      |..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|+|
T Consensus       341 P~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~L  379 (754)
T PRK15370        341 PASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNAL  379 (754)
T ss_pred             Chhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcC
Confidence            43332  35555555555555 344433   24555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.9e-18  Score=147.48  Aligned_cols=206  Identities=21%  Similarity=0.257  Sum_probs=130.4

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCC---CCEEeCCCCCCcc----CCchhccCC-CCCCEEEccCccCcc----cCCC
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSF---LQKLDLRNNSFTN----AIPPQIGHL-RRLQILYLQINSFDG----EIPA  141 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~----~~~~  141 (281)
                      .++++.|+++++.+.+..+..+..+..   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++    .++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            367888888888776555555544444   8888888887763    122344555 778888888887763    2333


Q ss_pred             CCCCCCCCcEEEccCCCCCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCcccCCc
Q 036746          142 STSNCSNLLVVSLALNHLVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGSIPD  213 (281)
Q Consensus       142 ~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~  213 (281)
                      .+..+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            455667788888888877632    233345556788888887776532    233455667788888888877642221


Q ss_pred             cCC-----CCCCCCEEEcccCcccc----ccChhccCCCCCcEEEcccCccccc----CChhhhhCC-CCCCEEeccCcc
Q 036746          214 TFG-----GLKNLVNLSLVVNNLSG----TIPPSIFNISSIQTFDVGSTYIEGE----MPLDLGTTL-PNLRIFSITGNQ  279 (281)
Q Consensus       214 ~~~-----~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~i~~~----~p~~~~~~~-~~L~~L~l~~N~  279 (281)
                      .+.     ..+.|+.|++++|.+++    .+...+..+++|+.+++++|.+++.    +...+- .. +.|+++|+.+|+
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  318 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLL-EPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHh-hcCCchhhcccCCCC
Confidence            111     24678888888887752    2334455567788888888887744    222222 33 678888888776


Q ss_pred             C
Q 036746          280 F  280 (281)
Q Consensus       280 l  280 (281)
                      +
T Consensus       319 ~  319 (319)
T cd00116         319 F  319 (319)
T ss_pred             C
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=3.1e-18  Score=146.18  Aligned_cols=206  Identities=23%  Similarity=0.235  Sum_probs=153.8

Q ss_pred             CcEEEEEcCCCCce------eecCccccCCCCCCEEeCCCCCCccCCchhccCCCC---CCEEEccCccCcc----cCCC
Q 036746           75 QRVTILDLQNLKLV------GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRR---LQILYLQINSFDG----EIPA  141 (281)
Q Consensus        75 ~~l~~L~l~~~~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~  141 (281)
                      +.++.++++++.+.      ..++..+..+++|++|++++|.+.+..+..+..+.+   |++|++++|.+.+    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            56889999888765      223456777889999999999998656666655554   9999999999873    2334


Q ss_pred             CCCCC-CCCcEEEccCCCCCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc--
Q 036746          142 STSNC-SNLLVVSLALNHLVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS--  210 (281)
Q Consensus       142 ~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~--  210 (281)
                      .+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.+.    ++..+...++|++|++++|.+.+.  
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            45666 8999999999998842    334566778999999999988742    334455667999999999998743  


Q ss_pred             --CCccCCCCCCCCEEEcccCccccccChhcc-----CCCCCcEEEcccCccccc----CChhhhhCCCCCCEEeccCcc
Q 036746          211 --IPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-----NISSIQTFDVGSTYIEGE----MPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       211 --~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~i~~~----~p~~~~~~~~~L~~L~l~~N~  279 (281)
                        ++..+..+++|+.|++++|.+++.....+.     ..+.|++|++++|.+++.    +...+ ..+++|+++++++|+
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~-~~~~~L~~l~l~~N~  289 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL-AEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH-hcCCCccEEECCCCC
Confidence              345567789999999999998853333222     237999999999998732    22222 356899999999998


Q ss_pred             CC
Q 036746          280 FT  281 (281)
Q Consensus       280 lt  281 (281)
                      ++
T Consensus       290 l~  291 (319)
T cd00116         290 FG  291 (319)
T ss_pred             Cc
Confidence            75

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.68  E-value=1.1e-16  Score=148.72  Aligned_cols=187  Identities=21%  Similarity=0.340  Sum_probs=120.2

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.|++++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|.++ .+|..+.  ++|+.|++
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L  290 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV  290 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence            57888999998886 4565443  46888888888887 5666553  47888888888887 5676554  47888888


Q ss_pred             cCCCCCCCCCcccC-------------------CCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccC
Q 036746          155 ALNHLVGKIPSEFG-------------------SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF  215 (281)
Q Consensus       155 ~~n~~~~~~~~~l~-------------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  215 (281)
                      ++|.++ .+|..+.                   ..++|+.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+
T Consensus       291 s~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l  365 (754)
T PRK15370        291 YDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL  365 (754)
T ss_pred             CCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh
Confidence            888776 3443221                   1134555555555554 2443332  46677777777665 455444


Q ss_pred             CCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhh---hCCCCCCEEeccCccCC
Q 036746          216 GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG---TTLPNLRIFSITGNQFT  281 (281)
Q Consensus       216 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~---~~~~~L~~L~l~~N~lt  281 (281)
                      .  ++|+.|++++|.++ .+|..+.  ..|+.|++++|++. .+|..+.   ..++++..|++.+|+|+
T Consensus       366 p--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        366 P--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             c--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            2  46777777777776 4555443  25777777777776 5555432   23477888888888874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.67  E-value=9.6e-16  Score=141.89  Aligned_cols=184  Identities=26%  Similarity=0.325  Sum_probs=107.7

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcc-----------------
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG-----------------  137 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------  137 (281)
                      .+++.|++.+|++. .+|.   ..++|++|++++|.++ .+|..   .++|+.|++++|.++.                 
T Consensus       222 ~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~  293 (788)
T PRK15387        222 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ  293 (788)
T ss_pred             cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCc
Confidence            46788888888876 3554   2478888888888887 34432   2344444444444331                 


Q ss_pred             --cCCCCCCCCCCCcEEEccCCCCCCCCCcc---c----------CC---C-CCCcEEeccccccccCCCcccCC-----
Q 036746          138 --EIPASTSNCSNLLVVSLALNHLVGKIPSE---F----------GS---L-SKLQFLSTTANNLIGNIPSSLGN-----  193 (281)
Q Consensus       138 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---l----------~~---l-~~L~~L~l~~n~~~~~~~~~l~~-----  193 (281)
                        .+|.   ..++|+.|++++|.+.+ +|..   +          ..   + .+|+.|++++|++.. +|.....     
T Consensus       294 Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~  368 (788)
T PRK15387        294 LTSLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLW  368 (788)
T ss_pred             cccccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceeh
Confidence              2222   12456777777776663 2221   1          11   1 246666666666652 3321110     


Q ss_pred             ------------CCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCCh
Q 036746          194 ------------LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPL  261 (281)
Q Consensus       194 ------------l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~  261 (281)
                                  ..+|+.|++++|.++ .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|.
T Consensus       369 Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~  439 (788)
T PRK15387        369 AYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPE  439 (788)
T ss_pred             hhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccCh
Confidence                        123455555555554 23322   245666677777666 35543   246777888888887 7888


Q ss_pred             hhhhCCCCCCEEeccCccCC
Q 036746          262 DLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       262 ~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+. .+++|+.|++++|+|+
T Consensus       440 sl~-~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        440 SLI-HLSSETTVNLEGNPLS  458 (788)
T ss_pred             HHh-hccCCCeEECCCCCCC
Confidence            876 7899999999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.66  E-value=2.8e-18  Score=155.77  Aligned_cols=197  Identities=25%  Similarity=0.369  Sum_probs=115.3

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.++++.+.+. .+|..++.+.+|+.++..+|.+. .+|..+....+|+.|.+..|.++ .+|+...++++|++|++
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            56777777777775 44567777777888887777774 44444444444444444444444 44444444555555555


Q ss_pred             cCCCCC-------------------------------------------------CCCCcccCCCCCCcEEecccccccc
Q 036746          155 ALNHLV-------------------------------------------------GKIPSEFGSLSKLQFLSTTANNLIG  185 (281)
Q Consensus       155 ~~n~~~-------------------------------------------------~~~~~~l~~l~~L~~L~l~~n~~~~  185 (281)
                      ..|.+.                                                 ...-+.+.++++|++|++++|.+. 
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-  396 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-  396 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence            555443                                                 333333445555666666665554 


Q ss_pred             CCC-cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhh
Q 036746          186 NIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG  264 (281)
Q Consensus       186 ~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~  264 (281)
                      .+| ..+.++..|++|+++||.++ .+|..+..+..|++|....|.+. ..| .+.+++.|+.+|++.|+++...-....
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            333 33455555666666666555 55555556666666666556555 455 566777888888888877743222221


Q ss_pred             hCCCCCCEEeccCcc
Q 036746          265 TTLPNLRIFSITGNQ  279 (281)
Q Consensus       265 ~~~~~L~~L~l~~N~  279 (281)
                       .-|+|++||++||.
T Consensus       474 -p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  474 -PSPNLKYLDLSGNT  487 (1081)
T ss_pred             -CCcccceeeccCCc
Confidence             23678888888875

>PLN03150 hypothetical protein; Provisional

Probab=99.63  E-value=2.5e-15  Score=138.52  Aligned_cols=151  Identities=30%  Similarity=0.480  Sum_probs=124.4

Q ss_pred             CCCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCC-----cccceEecCCC----CcEEEEEcCCCCceeecCccccCCC
Q 036746           29 SGNETDRAALLEFKSKITNDALGVLGSWNDSIHFC-----QWYGVTCSPRY----QRVTILDLQNLKLVGTLSPHIGNLS   99 (281)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~~~~~~----~~l~~L~l~~~~l~~~~~~~~~~l~   99 (281)
                      .....|..+|..+|..+. .+.  ..+|..  ++|     .|.|+.|....    ..++.|+++++.+.|.+|..++.++
T Consensus       368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~  442 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLG-LPL--RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR  442 (623)
T ss_pred             ccCchHHHHHHHHHHhcC-Ccc--cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence            345568889999999885 322  237854  345     79999995321    2588999999999999999999999


Q ss_pred             CCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCC-CCCcEEec
Q 036746          100 FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSL-SKLQFLST  178 (281)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l  178 (281)
                      +|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..++++++|++|++++|.+.+.+|..+..+ .++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999887654 45677888


Q ss_pred             cccccc
Q 036746          179 TANNLI  184 (281)
Q Consensus       179 ~~n~~~  184 (281)
                      .+|...
T Consensus       523 ~~N~~l  528 (623)
T PLN03150        523 TDNAGL  528 (623)
T ss_pred             cCCccc
Confidence            777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=1.1e-17  Score=152.10  Aligned_cols=184  Identities=27%  Similarity=0.346  Sum_probs=133.4

Q ss_pred             ecCccccCCCCCCEEeCCCCCCccCCchhcc--------------------------CCCCCCEEEccCccCcccCCCCC
Q 036746           90 TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG--------------------------HLRRLQILYLQINSFDGEIPAST  143 (281)
Q Consensus        90 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------~l~~L~~L~l~~n~l~~~~~~~~  143 (281)
                      .+|+...++++|++|+|..|.+. ..|+.+-                          .++.|+.|++.+|.++...-+.+
T Consensus       301 yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  301 YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence            35555566777777777777665 3332211                          02234455566666665555556


Q ss_pred             CCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCE
Q 036746          144 SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN  223 (281)
Q Consensus       144 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  223 (281)
                      .+.++|+.|++++|.+.......+.++..|++|++++|+++ .+|..+..+..|++|...+|++. .+| .+..+++|+.
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            78889999999999998443456789999999999999998 78999999999999999999998 888 8889999999


Q ss_pred             EEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCc
Q 036746          224 LSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       224 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      +|++.|+++...-+....-++|++||+++|.-. ......+..+.++...++.-|
T Consensus       457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             EecccchhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence            999999997533232223389999999999743 333333345566666665544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=2.1e-17  Score=137.46  Aligned_cols=206  Identities=24%  Similarity=0.250  Sum_probs=142.8

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCC-CCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcE
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRN-NSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV  151 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (281)
                      .+++++.||+++|++...-|..|.++..+..|-+.+ |.|+......|.++..++.|.+.-|.+.-...+.|..++++..
T Consensus        89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l  168 (498)
T KOG4237|consen   89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL  168 (498)
T ss_pred             chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence            458899999999999988899999999998888877 7777444445666655555555544444222233344444444


Q ss_pred             EEccCCCCCCCCCc-ccCCCCCCcEEeccccc------------------------------------------------
Q 036746          152 VSLALNHLVGKIPS-EFGSLSKLQFLSTTANN------------------------------------------------  182 (281)
Q Consensus       152 L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~------------------------------------------------  182 (281)
                      |.+..|.+. .++. .+..+..++.+.+..|.                                                
T Consensus       169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS  247 (498)
T ss_pred             hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence            444444333 1111 22222333332222221                                                


Q ss_pred             -------------cccCCC-cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEE
Q 036746          183 -------------LIGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTF  248 (281)
Q Consensus       183 -------------~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  248 (281)
                                   ..+..| ..|..+++|+.|++++|.+++.-+.+|.++..+++|.+..|++...-...|.++.+|+.|
T Consensus       248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL  327 (498)
T KOG4237|consen  248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTL  327 (498)
T ss_pred             HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceee
Confidence                         111222 247788999999999999998888999999999999999999975556778899999999


Q ss_pred             EcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          249 DVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       249 ~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +|.+|+|+...|..+ +.+..|..|++-+|++
T Consensus       328 ~L~~N~it~~~~~aF-~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  328 SLYDNQITTVAPGAF-QTLFSLSTLNLLSNPF  358 (498)
T ss_pred             eecCCeeEEEecccc-cccceeeeeehccCcc
Confidence            999999996555544 5889999999999886

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.52  E-value=2.3e-16  Score=136.79  Aligned_cols=180  Identities=26%  Similarity=0.441  Sum_probs=154.5

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ...+..|++.|.+. ++|..+..+..|+.+.++.|.+. .+|..+..+..|++||++.|+++ .+|..++.++ |+.|.+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            44566788888875 78888888888999999999887 78888999999999999999998 8898888776 899999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|+++ .+|..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+..+ .|..||+++|++. .
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~  225 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y  225 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence            999998 78888888899999999999887 77888999999999999999988 677777755 4899999999998 7


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhh
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLG  264 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~  264 (281)
                      +|-.|..+++|++|-|.+|.+. .-|.++-
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence            8999999999999999999998 5666653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=1.1e-13  Score=128.48  Aligned_cols=173  Identities=27%  Similarity=0.285  Sum_probs=111.7

Q ss_pred             CcEEEEEcCCCCceeecCccccC-----------------CCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGN-----------------LSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG  137 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~-----------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  137 (281)
                      ++++.|++++|++.. +|.....                 ...|+.|++++|.+. .+|.   .+++|+.|++++|.+++
T Consensus       242 ~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        242 PELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             CCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc
Confidence            677777777777663 2321111                 123445555555554 2332   23456666666666552


Q ss_pred             cCCCC---CC----------C---C-CCCcEEEccCCCCCCCCCcccC-----------------CCCCCcEEecccccc
Q 036746          138 EIPAS---TS----------N---C-SNLLVVSLALNHLVGKIPSEFG-----------------SLSKLQFLSTTANNL  183 (281)
Q Consensus       138 ~~~~~---~~----------~---l-~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L~l~~n~~  183 (281)
                       +|..   +.          .   + .+|+.|++++|++.. +|....                 ...+|+.|++++|.+
T Consensus       317 -Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~L  394 (788)
T PRK15387        317 -LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL  394 (788)
T ss_pred             -CCCCcccccccccccCccccccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCcc
Confidence             2221   10          0   1 256777777777663 332111                 113678888888887


Q ss_pred             ccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhh
Q 036746          184 IGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDL  263 (281)
Q Consensus       184 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~  263 (281)
                      . .+|..   .++|+.|++++|.++ .+|...   .+|+.|++++|+++ .+|..+.++++|+.|++++|++++.++..+
T Consensus       395 t-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        395 T-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             c-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            7 35543   357999999999998 577543   46888999999998 789999999999999999999998877655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.47  E-value=4.6e-14  Score=124.13  Aligned_cols=176  Identities=36%  Similarity=0.561  Sum_probs=101.4

Q ss_pred             cCCCCCCEEeCCCCCCccCCchhccCCC-CCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746           96 GNLSFLQKLDLRNNSFTNAIPPQIGHLR-RLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ  174 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  174 (281)
                      ..++.++.|++.+|.+. .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+..+.|+
T Consensus       113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            34455666666666665 4444444443 6666666666665 55555566666666666666666 4454444556666


Q ss_pred             EEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746          175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  254 (281)
                      .|++++|++. .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++. .++..+..++.++.|++++|.
T Consensus       190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence            6666666665 44444344445666666666433 34445555666666666666655 334555566666666666666


Q ss_pred             ccccCChhhhhCCCCCCEEeccCccC
Q 036746          255 IEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       255 i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++ .++. +. ...+++.|++++|.+
T Consensus       267 i~-~i~~-~~-~~~~l~~L~~s~n~~  289 (394)
T COG4886         267 IS-SISS-LG-SLTNLRELDLSGNSL  289 (394)
T ss_pred             cc-cccc-cc-ccCccCEEeccCccc
Confidence            66 3443 22 456666666666544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.45  E-value=2.2e-15  Score=130.89  Aligned_cols=175  Identities=26%  Similarity=0.463  Sum_probs=157.3

Q ss_pred             CCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEE
Q 036746           97 NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFL  176 (281)
Q Consensus        97 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  176 (281)
                      .+..-...+++.|.+. .+|..+..+..|+.+.++.|.+. .+|..+.++..|..++++.|+++ .+|..++.++ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            4455667889999998 78888888899999999999998 89999999999999999999999 7888887765 8999


Q ss_pred             eccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccc
Q 036746          177 STTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~  256 (281)
                      .+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++.
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence            99999987 78988998899999999999998 88889999999999999999998 778888754 7889999999999


Q ss_pred             ccCChhhhhCCCCCCEEeccCccCC
Q 036746          257 GEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       257 ~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       .+|.++. ++..|++|-|.+|+|+
T Consensus       225 -~iPv~fr-~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 -YLPVDFR-KMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -ecchhhh-hhhhheeeeeccCCCC
Confidence             8999997 8999999999999985

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.40  E-value=3.4e-13  Score=118.59  Aligned_cols=180  Identities=33%  Similarity=0.537  Sum_probs=152.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCC-CCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLS-FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      ..++.+++.++.+. .+++....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|......+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            56899999999986 5666676774 9999999999998 56667889999999999999999 7888777899999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++. .++..++.++.++.|++++|.++ 
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-  268 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-  268 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-
Confidence            9999999 67776666677999999999644 55667888899999999999887 55778889999999999999998 


Q ss_pred             ccChhccCCCCCcEEEcccCcccccCChh
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEMPLD  262 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~  262 (281)
                      .++. ++.+.+++.|++++|.+....|..
T Consensus       269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         269 SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccc-ccccCccCEEeccCccccccchhh
Confidence            4444 889999999999999988554443

>PLN03150 hypothetical protein; Provisional

Probab=99.34  E-value=2.4e-12  Score=118.90  Aligned_cols=107  Identities=29%  Similarity=0.526  Sum_probs=69.9

Q ss_pred             CcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEccc
Q 036746          173 LQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGS  252 (281)
Q Consensus       173 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~  252 (281)
                      ++.|++.+|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CcccccCChhhhhCCCCCCEEeccCcc
Q 036746          253 TYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       253 n~i~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      |+++|.+|..+.....++..+++.+|+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            666666666655333455566666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=5.6e-13  Score=112.69  Aligned_cols=205  Identities=24%  Similarity=0.253  Sum_probs=133.4

Q ss_pred             CCcEEEEEcCCCCceeecC--ccccCCCCCCEEeCCCCCCccC--CchhccCCCCCCEEEccCccCcccCCC-CCCCCCC
Q 036746           74 YQRVTILDLQNLKLVGTLS--PHIGNLSFLQKLDLRNNSFTNA--IPPQIGHLRRLQILYLQINSFDGEIPA-STSNCSN  148 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  148 (281)
                      .+.++.+.+++..+.. .+  .....+++++.|+|+.|-+...  +......+|+|+.|+++.|.+.-.... .-..+++
T Consensus       120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3567777777777642 22  2456788888888888866532  223345688888888888887621111 1124678


Q ss_pred             CcEEEccCCCCCCC-CCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC--ccCCCCCCCCEEE
Q 036746          149 LLVVSLALNHLVGK-IPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP--DTFGGLKNLVNLS  225 (281)
Q Consensus       149 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~  225 (281)
                      |+.|.++.|.++.. +-..+..+|+|+.|.+..|...........-+..|+.|+|++|++. .++  ...+.++.|+.|+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence            88888888888732 2223456788888888888532222223344567888999988876 333  3456788888888


Q ss_pred             cccCccccc-cChh-----ccCCCCCcEEEcccCcccccCCh-hhhhCCCCCCEEeccCccCC
Q 036746          226 LVVNNLSGT-IPPS-----IFNISSIQTFDVGSTYIEGEMPL-DLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       226 l~~n~l~~~-~p~~-----l~~l~~L~~L~l~~n~i~~~~p~-~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ++.+.+... .|+.     ...+++|+.|++..|+|...-.. .+. .+++|+.|.+.+|.|+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhccccccc
Confidence            888887642 2222     24568889999999988632222 233 5778888887777764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=9.9e-13  Score=111.21  Aligned_cols=183  Identities=23%  Similarity=0.182  Sum_probs=136.0

Q ss_pred             cCCCCCCEEeCCCCCCccCCc--hhccCCCCCCEEEccCccCccc--CCCCCCCCCCCcEEEccCCCCCCCCCc-ccCCC
Q 036746           96 GNLSFLQKLDLRNNSFTNAIP--PQIGHLRRLQILYLQINSFDGE--IPASTSNCSNLLVVSLALNHLVGKIPS-EFGSL  170 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l  170 (281)
                      .++++|+.+.|.++.+. ..+  .....|++++.||++.|-+...  +......+++|+.|+++.|++...... .-..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            56789999999999887 333  3567899999999999988742  234457899999999999998632221 12356


Q ss_pred             CCCcEEeccccccccC-CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC--hhccCCCCCcE
Q 036746          171 SKLQFLSTTANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP--PSIFNISSIQT  247 (281)
Q Consensus       171 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~  247 (281)
                      +.|+.|.++.|.++.. +-..+..+++|+.|++.+|............++.|++|+|++|++.. .+  ...+.+++|+.
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence            8899999999988643 22334567899999999996332333344557889999999999873 33  45678999999


Q ss_pred             EEcccCccccc-CChh----hhhCCCCCCEEeccCccC
Q 036746          248 FDVGSTYIEGE-MPLD----LGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       248 L~l~~n~i~~~-~p~~----~~~~~~~L~~L~l~~N~l  280 (281)
                      |+++.+.|... +|..    ....+++|++|+++.|++
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            99999998842 2221    234689999999999987

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=2e-11  Score=93.92  Aligned_cols=107  Identities=26%  Similarity=0.293  Sum_probs=25.2

Q ss_pred             CCCCCCEEEccCccCcccCCCCCC-CCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCccc-CCCCCCC
Q 036746          121 HLRRLQILYLQINSFDGEIPASTS-NCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSSLR  198 (281)
Q Consensus       121 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~  198 (281)
                      +..+++.|+|++|.|+ .+. .++ .+.+|+.|++++|.+...  +.+..++.|++|++++|.+.. ++..+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            4445666666666665 322 233 355666666666666522  234555556666666665542 22222 2345555


Q ss_pred             EEEcccCcCcccC-CccCCCCCCCCEEEcccCccc
Q 036746          199 GLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       199 ~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      +|++++|.+...- -..+..+++|+.|++.+|.++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            5555555554211 123334455555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=6e-12  Score=103.77  Aligned_cols=184  Identities=20%  Similarity=0.254  Sum_probs=112.7

Q ss_pred             cCCCCCCEEeCCCCCCccCCch----hccCCCCCCEEEccCccCcc----c---------CCCCCCCCCCCcEEEccCCC
Q 036746           96 GNLSFLQKLDLRNNSFTNAIPP----QIGHLRRLQILYLQINSFDG----E---------IPASTSNCSNLLVVSLALNH  158 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~----~---------~~~~~~~l~~L~~L~l~~n~  158 (281)
                      ...++|++++|+.|.+...-+.    -+..+..|++|.+.+|.+..    .         ...-...-++|+++.+.+|+
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            4455777777777766533222    23456677777777776641    1         11112334667777777777


Q ss_pred             CCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEc
Q 036746          159 LVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSL  226 (281)
Q Consensus       159 ~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l  226 (281)
                      +...    +...+...+.|+.+.+..|.+...    +...+..+++|++|+|.+|.++..    +...+..+++|+++++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            6522    223455667777777777766421    123466778888888888877632    3455667778888888


Q ss_pred             ccCccccccChhcc-----CCCCCcEEEcccCcccccCCh----hhhhCCCCCCEEeccCccC
Q 036746          227 VVNNLSGTIPPSIF-----NISSIQTFDVGSTYIEGEMPL----DLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       227 ~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~i~~~~p~----~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++|.+.......+.     ..++|+.|++.+|.|+...-.    .+. ..|.|+.|++++|.+
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~-ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA-EKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh-cchhhHHhcCCcccc
Confidence            88877643332222     357788888888887743211    222 467788888888876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=4.9e-11  Score=91.75  Aligned_cols=127  Identities=24%  Similarity=0.313  Sum_probs=52.3

Q ss_pred             CCCCCCCcEEEccCCCCCCCCCcccC-CCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccC-CCCCC
Q 036746          143 TSNCSNLLVVSLALNHLVGKIPSEFG-SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF-GGLKN  220 (281)
Q Consensus       143 ~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~  220 (281)
                      +.+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.+.. + +.+..++.|++|++++|.++ .+...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            3455678999999999983 3 3455 57899999999999974 3 34788999999999999998 444444 35899


Q ss_pred             CCEEEcccCccccc-cChhccCCCCCcEEEcccCcccccCCh---hhhhCCCCCCEEec
Q 036746          221 LVNLSLVVNNLSGT-IPPSIFNISSIQTFDVGSTYIEGEMPL---DLGTTLPNLRIFSI  275 (281)
Q Consensus       221 L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~i~~~~p~---~~~~~~~~L~~L~l  275 (281)
                      |++|++++|++.+. --..++.+++|+.|++.+|+++.. +.   .+...+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            99999999999742 124677899999999999999843 32   24457999999975

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1e-11  Score=102.43  Aligned_cols=206  Identities=21%  Similarity=0.304  Sum_probs=117.3

Q ss_pred             CcEEEEEcCCCCcee----ecCccccCCCCCCEEeCCCCCCcc----CCch-------hccCCCCCCEEEccCccCcccC
Q 036746           75 QRVTILDLQNLKLVG----TLSPHIGNLSFLQKLDLRNNSFTN----AIPP-------QIGHLRRLQILYLQINSFDGEI  139 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~----~~~~-------~~~~l~~L~~L~l~~n~l~~~~  139 (281)
                      ..++.+++++|.+..    .+...+.+.+.|+..+++.- ++|    .+|+       .+-.+++|++|+||.|-+....
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            456777777776642    23344555566677666643 222    2232       2335567777777777765333


Q ss_pred             CCC----CCCCCCCcEEEccCCCCCCCC-------------CcccCCCCCCcEEeccccccccC----CCcccCCCCCCC
Q 036746          140 PAS----TSNCSNLLVVSLALNHLVGKI-------------PSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLR  198 (281)
Q Consensus       140 ~~~----~~~l~~L~~L~l~~n~~~~~~-------------~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~  198 (281)
                      +..    +..+..|++|.+.+|.+...-             ......-++|+++...+|.+...    +...+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            322    345667777777777665211             11234456677777777665421    122345556777


Q ss_pred             EEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc----cChhccCCCCCcEEEcccCcccccCChhh----hhC
Q 036746          199 GLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----IPPSIFNISSIQTFDVGSTYIEGEMPLDL----GTT  266 (281)
Q Consensus       199 ~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~i~~~~p~~~----~~~  266 (281)
                      .+.+..|.+...    +...+..++.|+.||+..|.++..    +...+..+++|+.|++++|.+.......+    ...
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            777777766421    224456677777777777766532    22344456677777777777664433332    235


Q ss_pred             CCCCCEEeccCccCC
Q 036746          267 LPNLRIFSITGNQFT  281 (281)
Q Consensus       267 ~~~L~~L~l~~N~lt  281 (281)
                      .|+|+.|++.+|.+|
T Consensus       269 ~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  269 APSLEVLELAGNEIT  283 (382)
T ss_pred             CCCCceeccCcchhH
Confidence            667777777777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=1.6e-11  Score=99.67  Aligned_cols=183  Identities=23%  Similarity=0.254  Sum_probs=110.2

Q ss_pred             cCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcc---cCC--------------------CCCCCCC
Q 036746           91 LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG---EIP--------------------ASTSNCS  147 (281)
Q Consensus        91 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~--------------------~~~~~l~  147 (281)
                      +|..+.-+.+|+.+.++.+.-. .+-+....-|.|+++-..+..++.   .+|                    ..+....
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence            4445556677777777776433 111111223456666555443321   011                    1112234


Q ss_pred             CCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746          148 NLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  227 (281)
                      .|+++++++|.++ .+..+..-.|+++.|+++.|.+...  +.+..+.+|+.|++++|.++ .+..+-.++-++++|.++
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            5777788888777 5555666677888888888877522  34777778888888888776 444454566777778888


Q ss_pred             cCccccccChhccCCCCCcEEEcccCcccccCC-hhhhhCCCCCCEEeccCccCC
Q 036746          228 VNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP-LDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       228 ~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p-~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .|.+. .+ ..+..+-+|..||+.+|+|...-. ..+. .+|.|+.+.+.+|+++
T Consensus       361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  361 QNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccc-cccHHHHHhhcCCCcc
Confidence            87775 22 345566677778888887763111 1233 6777788877777763

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.04  E-value=1.8e-10  Score=73.19  Aligned_cols=61  Identities=31%  Similarity=0.530  Sum_probs=42.3

Q ss_pred             CCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          219 KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       219 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++|++|++++|+++...+..+..+++|++|++++|.++ .++.+.+.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            35677777777777444456677777777777777776 55555555777777777777764

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=2.1e-11  Score=98.95  Aligned_cols=128  Identities=27%  Similarity=0.273  Sum_probs=64.4

Q ss_pred             CCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEec
Q 036746           99 SFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLST  178 (281)
Q Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  178 (281)
                      ..|+++++++|.++ .+..+..-.|.++.|++++|.+. .+ ..+..+++|+.|++++|.++ .+..+-.++.+++.|.+
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            34555566655555 33344444555556666655554 22 22455555555565555554 22333344455555555


Q ss_pred             cccccccCCCcccCCCCCCCEEEcccCcCccc-CCccCCCCCCCCEEEcccCccc
Q 036746          179 TANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      +.|.+.. + ..++++-+|..|++++|++... --..+++++.|+.+.+.+|.+.
T Consensus       360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            5555431 1 2244555555555555555421 1134555555555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=1e-09  Score=69.64  Aligned_cols=61  Identities=31%  Similarity=0.492  Sum_probs=43.7

Q ss_pred             CCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746          195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI  255 (281)
Q Consensus       195 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i  255 (281)
                      ++|++|++++|.++...+..|.++++|++|++++|.++...|..+.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777755556777777777777777777766566777777777777777764

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.90  E-value=7.7e-12  Score=112.04  Aligned_cols=180  Identities=24%  Similarity=0.264  Sum_probs=126.8

Q ss_pred             CccccCCCCCCEEeCCCCCCccCCchhccC-CCCCCEEEccCccCc---ccC---CCCCCC---CCCCcEEEccCCCCCC
Q 036746           92 SPHIGNLSFLQKLDLRNNSFTNAIPPQIGH-LRRLQILYLQINSFD---GEI---PASTSN---CSNLLVVSLALNHLVG  161 (281)
Q Consensus        92 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~---~~~---~~~~~~---l~~L~~L~l~~n~~~~  161 (281)
                      |-++..+..|++|.++++.+.. .- .+.. -..|++|.-.+ .+.   ..+   ...+++   ...|...++++|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            5567788999999999998873 11 1211 12355543322 211   001   111221   246788889999887 


Q ss_pred             CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccC
Q 036746          162 KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN  241 (281)
Q Consensus       162 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~  241 (281)
                      .+...+.-++.++.|++++|++...  +.+..++.|++|||++|.+. .+|..-..-..|..|.+.+|.++ .+ ..+.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHh
Confidence            6667777889999999999999744  47888999999999999998 66643333344999999999997 33 45678


Q ss_pred             CCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       242 l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +++|+.||+++|-|.+.-.-...-.+..|+.|+|.||++
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            999999999999988754433333567899999999986

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=6.3e-10  Score=98.45  Aligned_cols=125  Identities=26%  Similarity=0.314  Sum_probs=64.5

Q ss_pred             EEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746           77 VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL  156 (281)
Q Consensus        77 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  156 (281)
                      +..+.++.+.+.. +-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|.|+..  ..+..++.|+.|++.+
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence            3344444444432 2223555666666666666665 2322245566666666666666522  2233445566666666


Q ss_pred             CCCCCCCCcccCCCCCCcEEeccccccccCCC-cccCCCCCCCEEEcccCcCc
Q 036746          157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP-SSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~  208 (281)
                      |.+...  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            666521  233445666666666666543222 1 344555566666665553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.75  E-value=2.8e-09  Score=101.33  Aligned_cols=107  Identities=25%  Similarity=0.362  Sum_probs=80.6

Q ss_pred             CcEEEEEcCCCC--ceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746           75 QRVTILDLQNLK--LVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (281)
                      +.++.|-+..+.  +....+..|..++.|+.||+++|.-.+.+|..++.+-+||+|+++++.+. .+|.++.++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            457777777665  33223334677888888888888777788888888888888888888888 888888888888888


Q ss_pred             EccCCCCCCCCCcccCCCCCCcEEeccccc
Q 036746          153 SLALNHLVGKIPSEFGSLSKLQFLSTTANN  182 (281)
Q Consensus       153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  182 (281)
                      ++..+.....+|.....+.+|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            888877665556666668888888886543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=1.3e-08  Score=96.77  Aligned_cols=129  Identities=28%  Similarity=0.329  Sum_probs=100.3

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC--CccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS--FTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (281)
                      ..++.+.+-++.+. .++... ..+.|++|-+..|.  +.......|..++.|++||+++|.--+.+|..++.+.+|++|
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            34566666666553 233322 33478999999886  443344457889999999999887767999999999999999


Q ss_pred             EccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCc
Q 036746          153 SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG  206 (281)
Q Consensus       153 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  206 (281)
                      +++++.+. .+|.++.++.+|.+|++..+.....+|.....+.+|++|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999998 899999999999999999877665666667778999999987764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.65  E-value=2.6e-09  Score=94.56  Aligned_cols=174  Identities=25%  Similarity=0.259  Sum_probs=112.4

Q ss_pred             CCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcE
Q 036746           72 PRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV  151 (281)
Q Consensus        72 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (281)
                      .....++.+++.+|.+.... ..+..+++|++|++++|.|....  .+..++.|+.|++++|.++. + ..+..++.|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhhc
Confidence            34478999999999986433 22678999999999999998432  35677889999999999973 2 34556899999


Q ss_pred             EEccCCCCCCCCCcc-cCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCC--CCCEEEccc
Q 036746          152 VSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK--NLVNLSLVV  228 (281)
Q Consensus       152 L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~--~L~~L~l~~  228 (281)
                      +++++|.+...-+ . ...+.+++.+.+.+|.+...  ..+..+..+..+++..|.++..-+  +....  .|+++++++
T Consensus       167 l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  167 LDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSG  241 (414)
T ss_pred             ccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhccc
Confidence            9999999984433 2 56778888899988877522  223333334444555555542211  11111  255666666


Q ss_pred             CccccccChhccCCCCCcEEEcccCccc
Q 036746          229 NNLSGTIPPSIFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~  256 (281)
                      |.+. ..+..+..+..+..|++..|++.
T Consensus       242 n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  242 NRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             Cccc-cccccccccccccccchhhcccc
Confidence            6655 22233444555555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=9.5e-09  Score=83.61  Aligned_cols=184  Identities=18%  Similarity=0.152  Sum_probs=108.1

Q ss_pred             CCCCCCEEeCCCCCCcc--CCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCC-CCcccCCCCCC
Q 036746           97 NLSFLQKLDLRNNSFTN--AIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGK-IPSEFGSLSKL  173 (281)
Q Consensus        97 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L  173 (281)
                      ...+++.++|.+|.++.  .+...+.++|.|++|+++.|.+...+...-....+|++|.+.+..+.-. ....+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45788999999998874  3445567899999999999998743332224668899999988877633 33456778889


Q ss_pred             cEEeccccccccC--CCcccCCC-CCCCEEEcccCcCcc--cCCccCCCCCCCCEEEcccCccccc-cChhccCCCCCcE
Q 036746          174 QFLSTTANNLIGN--IPSSLGNL-SSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGT-IPPSIFNISSIQT  247 (281)
Q Consensus       174 ~~L~l~~n~~~~~--~~~~l~~l-~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~  247 (281)
                      ++|+++.|.+...  ........ +.+++++...|...-  .....-...+++..+.+..|.+... .......++.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999988854321  11111222 134444444443210  0000011234555566666655321 1122334555556


Q ss_pred             EEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       248 L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      |+|+.|+|......+...+++.|..|.+++|++
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            666666666544444445666666666666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.48  E-value=8.1e-08  Score=77.35  Aligned_cols=183  Identities=18%  Similarity=0.172  Sum_probs=81.8

Q ss_pred             CcEEEEEcCCCCceee----cCccccCCCCCCEEeCCCCCCc---cCCc-------hhccCCCCCCEEEccCccCcccCC
Q 036746           75 QRVTILDLQNLKLVGT----LSPHIGNLSFLQKLDLRNNSFT---NAIP-------PQIGHLRRLQILYLQINSFDGEIP  140 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~---~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~  140 (281)
                      ..++.+++++|.+...    +...+.+-.+|+..+++.-...   ..++       ..+-+||+|+..++|.|-+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            3455666666665432    2223344445555555532111   1111       223355666666666666554444


Q ss_pred             CC----CCCCCCCcEEEccCCCCCCCCCc-------------ccCCCCCCcEEeccccccccCCCcc-----cCCCCCCC
Q 036746          141 AS----TSNCSNLLVVSLALNHLVGKIPS-------------EFGSLSKLQFLSTTANNLIGNIPSS-----LGNLSSLR  198 (281)
Q Consensus       141 ~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~l~~l~~L~~L~l~~n~~~~~~~~~-----l~~l~~L~  198 (281)
                      ..    ++..+.|.+|.+++|.+....-.             ....-|.|+.+.+..|.+. ..+..     +..-..|+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence            33    34445666666666655411111             1123455666666655553 22211     11123555


Q ss_pred             EEEcccCcCcccC-----CccCCCCCCCCEEEcccCcccccc----ChhccCCCCCcEEEcccCccccc
Q 036746          199 GLSLSRNGFYGSI-----PDTFGGLKNLVNLSLVVNNLSGTI----PPSIFNISSIQTFDVGSTYIEGE  258 (281)
Q Consensus       199 ~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~l~~n~i~~~  258 (281)
                      ++.+..|.|...-     -..+..+.+|+.|++..|.++...    ...+...+.|+.|.+.+|-++..
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence            5555555554110     011223455555555555554211    12222334455555555544433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.39  E-value=5.5e-09  Score=75.49  Aligned_cols=105  Identities=25%  Similarity=0.273  Sum_probs=59.5

Q ss_pred             CCCEEEccCccCcccCCC---CCCCCCCCcEEEccCCCCCCCCCcccCCC-CCCcEEeccccccccCCCcccCCCCCCCE
Q 036746          124 RLQILYLQINSFDGEIPA---STSNCSNLLVVSLALNHLVGKIPSEFGSL-SKLQFLSTTANNLIGNIPSSLGNLSSLRG  199 (281)
Q Consensus       124 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  199 (281)
                      .+..++|+.|.+- .+++   .+.....|..+++++|.+. ..|+.|... +.++++++++|++. .+|.++..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3455666666654 2332   2334455555666666666 445444333 35666666666665 45655666666666


Q ss_pred             EEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       200 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      ++++.|.+. ..|+.+..+.++..|+..+|.+.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            666666665 45555555555666666555554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.36  E-value=7.8e-07  Score=51.82  Aligned_cols=40  Identities=55%  Similarity=1.002  Sum_probs=30.7

Q ss_pred             HhHHHHHHHHHhhcccCCCCCCCCCCCC--CCCCcccceEec
Q 036746           32 ETDRAALLEFKSKITNDALGVLGSWNDS--IHFCQWYGVTCS   71 (281)
Q Consensus        32 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~~~   71 (281)
                      ++|+++|++||+.+..++...+.+|...  .++|.|.||.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            4788999999999986677889999887  799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=1.2e-06  Score=51.22  Aligned_cols=37  Identities=30%  Similarity=0.596  Sum_probs=27.6

Q ss_pred             CCCCEEEcccCccccccChhccCCCCCcEEEcccCccc
Q 036746          219 KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       219 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~  256 (281)
                      ++|++|++++|+++ .+|+.++++++|+.|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46788888888887 56666788888888888888877

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=6.6e-09  Score=84.55  Aligned_cols=177  Identities=22%  Similarity=0.252  Sum_probs=101.8

Q ss_pred             CCCEEeCCCCCCcc-CCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC-CCCCC-CCcccCCCCCCcEE
Q 036746          100 FLQKLDLRNNSFTN-AIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN-HLVGK-IPSEFGSLSKLQFL  176 (281)
Q Consensus       100 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L  176 (281)
                      .|++|||++..++. .+...+..|.+|+.|.+.++++...+...+.+-.+|+.++++.+ .++.. ..-.+.++..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            36777777766652 23344556777777777777777666666667777777777654 23311 11234567777777


Q ss_pred             eccccccccCCC-cccCCC-CCCCEEEcccCcCc---ccCCccCCCCCCCCEEEcccCc-cccccChhccCCCCCcEEEc
Q 036746          177 STTANNLIGNIP-SSLGNL-SSLRGLSLSRNGFY---GSIPDTFGGLKNLVNLSLVVNN-LSGTIPPSIFNISSIQTFDV  250 (281)
Q Consensus       177 ~l~~n~~~~~~~-~~l~~l-~~L~~L~l~~n~~~---~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l  250 (281)
                      +++.+.+..... -.+.+. ++|+.|+++|+.-.   ..+.--..++++|.+||+++|. ++......+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            777765542211 111111 35666777665321   0111112457778888887764 34334455667778888877


Q ss_pred             ccCcccccCChhhh--hCCCCCCEEeccCc
Q 036746          251 GSTYIEGEMPLDLG--TTLPNLRIFSITGN  278 (281)
Q Consensus       251 ~~n~i~~~~p~~~~--~~~~~L~~L~l~~N  278 (281)
                      +-|..  .+|..+.  ...|.|.+||+.|+
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            77752  2344332  35577777777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=3.2e-08  Score=71.58  Aligned_cols=87  Identities=23%  Similarity=0.338  Sum_probs=52.1

Q ss_pred             ccCCCCCCEEeCCCCCCccCCchhcc-CCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCC
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPPQIG-HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKL  173 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  173 (281)
                      +....+|+..+|++|.+. ..|+.|. .++.++.|++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++
T Consensus        49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence            444555666666666666 4444443 4456666666666666 66666666666666666666666 445555555566


Q ss_pred             cEEeccccccc
Q 036746          174 QFLSTTANNLI  184 (281)
Q Consensus       174 ~~L~l~~n~~~  184 (281)
                      ..|+...|.+.
T Consensus       126 ~~Lds~~na~~  136 (177)
T KOG4579|consen  126 DMLDSPENARA  136 (177)
T ss_pred             HHhcCCCCccc
Confidence            66655555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=2.2e-06  Score=50.11  Aligned_cols=36  Identities=36%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             CCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       196 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 44445566666666666666665

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=1.2e-08  Score=92.08  Aligned_cols=124  Identities=27%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcc-cCCCCCCcEEecc
Q 036746          101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTT  179 (281)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~  179 (281)
                      |...+.+.|.+. .+..++.-++.++.|+|++|+++. . +.+..+++|++||+++|.+. .+|.. ...+ .|+.|.+.
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            444455555554 344445556666666666666652 2 25556666666666666665 33432 1222 26666666


Q ss_pred             ccccccCCCcccCCCCCCCEEEcccCcCcccC-CccCCCCCCCCEEEcccCcc
Q 036746          180 ANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNL  231 (281)
Q Consensus       180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l  231 (281)
                      +|.++..  ..+.++++|+.||+++|-+.+.- -..+..+..|++|+|.+|.+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6665422  23555666666666666554221 12233455566666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.10  E-value=7e-07  Score=72.08  Aligned_cols=205  Identities=21%  Similarity=0.183  Sum_probs=137.9

Q ss_pred             CcEEEEEcCCCCc---eeecC-------ccccCCCCCCEEeCCCCCCccCCch----hccCCCCCCEEEccCccCcc---
Q 036746           75 QRVTILDLQNLKL---VGTLS-------PHIGNLSFLQKLDLRNNSFTNAIPP----QIGHLRRLQILYLQINSFDG---  137 (281)
Q Consensus        75 ~~l~~L~l~~~~l---~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~---  137 (281)
                      .+++..+++..-.   ...++       +.+.++++|+..+|+.|.+....|.    .+.+-..|.+|.+++|.+..   
T Consensus        58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG  137 (388)
T COG5238          58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG  137 (388)
T ss_pred             cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch
Confidence            5666666664321   11222       3467889999999999998866554    34567889999999998751   


Q ss_pred             -cCC---------CCCCCCCCCcEEEccCCCCCCCCC-----cccCCCCCCcEEeccccccccCCC-----cccCCCCCC
Q 036746          138 -EIP---------ASTSNCSNLLVVSLALNHLVGKIP-----SEFGSLSKLQFLSTTANNLIGNIP-----SSLGNLSSL  197 (281)
Q Consensus       138 -~~~---------~~~~~l~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~-----~~l~~l~~L  197 (281)
                       .+.         .-..+-|.|+++++.+|++. ..+     ..+..-..|+++.+..|.+.-...     ..+..+.+|
T Consensus       138 ~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L  216 (388)
T COG5238         138 GRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL  216 (388)
T ss_pred             hHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence             111         11345588999999999986 222     223444689999999987752211     123456899


Q ss_pred             CEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccccChhcc------CCCCCcEEEcccCcccccCChh-----
Q 036746          198 RGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPPSIF------NISSIQTFDVGSTYIEGEMPLD-----  262 (281)
Q Consensus       198 ~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~------~l~~L~~L~l~~n~i~~~~p~~-----  262 (281)
                      +.|++++|.++-.    +...+..++.|++|.+..|-++......+.      ..++|..|...+|.+.+.+-..     
T Consensus       217 evLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~  296 (388)
T COG5238         217 EVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE  296 (388)
T ss_pred             eeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhh
Confidence            9999999998732    334556778899999999988644333221      3578888999999877644333     


Q ss_pred             -hhhCCCCCCEEeccCccC
Q 036746          263 -LGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       263 -~~~~~~~L~~L~l~~N~l  280 (281)
                       ....+|-|..|.+.||.|
T Consensus       297 ~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         297 FEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             hhhcccHHHHHHHHccCcc
Confidence             223567777777888876

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=2.2e-08  Score=81.54  Aligned_cols=155  Identities=18%  Similarity=0.138  Sum_probs=107.1

Q ss_pred             CCCEEEccCccCcc-cCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCC--cccCCCCCCCEE
Q 036746          124 RLQILYLQINSFDG-EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP--SSLGNLSSLRGL  200 (281)
Q Consensus       124 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L  200 (281)
                      .|++|||++..++. .+-.-+..+.+|+.|.+.++++...+...+..-.+|+.|+++.+.-.....  --+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            58899999888873 223345677889999999999987777778888889999998753211111  235678899999


Q ss_pred             EcccCcCcccCCc-cCCC-CCCCCEEEcccCcc---ccccChhccCCCCCcEEEcccCc-ccccCChhhhhCCCCCCEEe
Q 036746          201 SLSRNGFYGSIPD-TFGG-LKNLVNLSLVVNNL---SGTIPPSIFNISSIQTFDVGSTY-IEGEMPLDLGTTLPNLRIFS  274 (281)
Q Consensus       201 ~l~~n~~~~~~p~-~~~~-l~~L~~L~l~~n~l---~~~~p~~l~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~L~~L~  274 (281)
                      ++++|......-. .+.+ -.+|..|+++++.-   ...+......++++.+|||++|. ++......++ .++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence            9999987643221 1122 36788888888632   11223344578999999999884 5533334455 789999999


Q ss_pred             ccCcc
Q 036746          275 ITGNQ  279 (281)
Q Consensus       275 l~~N~  279 (281)
                      ++.|.
T Consensus       345 lsRCY  349 (419)
T KOG2120|consen  345 LSRCY  349 (419)
T ss_pred             hhhhc
Confidence            98764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=5.7e-07  Score=73.47  Aligned_cols=187  Identities=18%  Similarity=0.130  Sum_probs=117.1

Q ss_pred             cccCCCCCCEEeCCCCCCccC-Cchhc-cCCCCCCEEEccCccCcc--cCCCCCCCCCCCcEEEccCCCCCCCCCcccCC
Q 036746           94 HIGNLSFLQKLDLRNNSFTNA-IPPQI-GHLRRLQILYLQINSFDG--EIPASTSNCSNLLVVSLALNHLVGKIPSEFGS  169 (281)
Q Consensus        94 ~~~~l~~L~~L~l~~n~l~~~-~~~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  169 (281)
                      .+.....++.+.+.++.+... ....| ..+..++.+|+.+|.++.  .+...+.++|.|+.|+++.|.+...+-..-..
T Consensus        40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence            344445566777777766421 11123 246789999999999983  34455678999999999999988433222245


Q ss_pred             CCCCcEEeccccccccCCC-cccCCCCCCCEEEcccCcCccc--CCccCCCC-CCCCEEEcccCcccc--ccChhccCCC
Q 036746          170 LSKLQFLSTTANNLIGNIP-SSLGNLSSLRGLSLSRNGFYGS--IPDTFGGL-KNLVNLSLVVNNLSG--TIPPSIFNIS  243 (281)
Q Consensus       170 l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~--~p~~~~~l-~~L~~L~l~~n~l~~--~~p~~l~~l~  243 (281)
                      ..+|+.|-+.+..+..... ..+..++.+++|+++.|.+...  ..+..... +.+++|.+-.|....  .....-.-++
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            6789999999887764432 3455678888999998855321  11122222 245555555543321  1111122456


Q ss_pred             CCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          244 SIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       244 ~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++..+-+..|++...-...-+..+|.+..|+++.|+|
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i  236 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI  236 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhccccc
Confidence            7888888888887554444445678888888888776

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=1.7e-05  Score=68.78  Aligned_cols=132  Identities=17%  Similarity=0.208  Sum_probs=76.3

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCc-cCcccCCCCCCCCCCCcEEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN-SFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  153 (281)
                      ..++.|++++|.+. .+|. +  -++|++|.+++|.-...+|..+  .++|++|++++| .+. .+|.      +|+.|+
T Consensus        52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence            56778888888764 3442 2  1358888888755444566554  357888888887 444 4554      466666


Q ss_pred             ccCCCCCCCCCcccCCCC-CCcEEeccccccc--cCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccC
Q 036746          154 LALNHLVGKIPSEFGSLS-KLQFLSTTANNLI--GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVN  229 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  229 (281)
                      +..+...     .+..+| +|+.|.+.++...  ...|..  -.++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       119 L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eCCCCCc-----ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            6655432     122232 3666666432211  111211  1257888888887765 3443333  57788887765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=9.3e-07  Score=82.35  Aligned_cols=125  Identities=18%  Similarity=0.184  Sum_probs=61.4

Q ss_pred             CCCCcEEEccCCCCCC-CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcc-cCCccCCCCCCCCE
Q 036746          146 CSNLLVVSLALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG-SIPDTFGGLKNLVN  223 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~  223 (281)
                      +|+|++|.+++-.+.. .......++|+|+.||+++..+...  ..++.+++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            4666666665544431 1223344556666666666555422  335556666666655544432 11123445666666


Q ss_pred             EEcccCcccccc------ChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCE
Q 036746          224 LSLVVNNLSGTI------PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRI  272 (281)
Q Consensus       224 L~l~~n~l~~~~------p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~  272 (281)
                      ||+|........      -..-..+++|+.||.+++.+.+.+-..+....|+|+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            666655443211      0111235666666666666655444444433444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.02  E-value=1.1e-05  Score=62.38  Aligned_cols=103  Identities=25%  Similarity=0.272  Sum_probs=53.3

Q ss_pred             CCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCC-CcccCCCCCCcEEec
Q 036746          100 FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKI-PSEFGSLSKLQFLST  178 (281)
Q Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l  178 (281)
                      +...++|++|.+. . -..|.+++.|.+|.+.+|+|+..-|.--..+++|+.|.+.+|.+.... -..+..+|+|++|.+
T Consensus        43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4556666666665 2 234566666677777777766333333333456666666666665210 123445566666666


Q ss_pred             cccccccC---CCcccCCCCCCCEEEccc
Q 036746          179 TANNLIGN---IPSSLGNLSSLRGLSLSR  204 (281)
Q Consensus       179 ~~n~~~~~---~~~~l~~l~~L~~L~l~~  204 (281)
                      -+|.....   ---.+..+++|+.||.+.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            55544311   011234455555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.90  E-value=4.3e-06  Score=77.98  Aligned_cols=133  Identities=20%  Similarity=0.329  Sum_probs=93.3

Q ss_pred             CCCcEEEccCCCCC-CCCCccc-CCCCCCcEEeccccccccC-CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCE
Q 036746          147 SNLLVVSLALNHLV-GKIPSEF-GSLSKLQFLSTTANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN  223 (281)
Q Consensus       147 ~~L~~L~l~~n~~~-~~~~~~l-~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  223 (281)
                      .+|++|++++...- ..-|..+ ..+|+|+.|.+++-.+... +.....++++|..||+++.+++ .+ ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            57888888775432 1122233 3579999999998766422 2344567899999999999987 33 67889999999


Q ss_pred             EEcccCcccc-ccChhccCCCCCcEEEcccCccccc--CCh---hhhhCCCCCCEEeccCccCC
Q 036746          224 LSLVVNNLSG-TIPPSIFNISSIQTFDVGSTYIEGE--MPL---DLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       224 L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~i~~~--~p~---~~~~~~~~L~~L~l~~N~lt  281 (281)
                      |.+.+=.+.. ..-..+.++++|+.||+|.......  +..   +....+|+|+.||.|+..++
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9887766652 2224677899999999998765421  111   22347899999999987653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=8e-05  Score=64.75  Aligned_cols=137  Identities=16%  Similarity=0.193  Sum_probs=88.7

Q ss_pred             ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  174 (281)
                      +..+.+++.|++++|.+. .+| .  -.++|+.|.+++|.--..+|..+.  ++|++|++++|.....+|.      .|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence            455688999999999887 556 2  234799999998554346676553  6899999998833224553      467


Q ss_pred             EEeccccccc--cCCCcccCCCCCCCEEEcccCcCc--ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEc
Q 036746          175 FLSTTANNLI--GNIPSSLGNLSSLRGLSLSRNGFY--GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDV  250 (281)
Q Consensus       175 ~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l  250 (281)
                      .|++..+...  +.+|.      +|+.|.+.+++..  ..+|..+  .++|+.|++++|... .+|..+.  .+|+.|++
T Consensus       116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             eEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            7777655432  22333      5677777543311  1112111  268999999998876 4554443  58999999


Q ss_pred             ccCc
Q 036746          251 GSTY  254 (281)
Q Consensus       251 ~~n~  254 (281)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            8763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=3.9e-05  Score=59.47  Aligned_cols=126  Identities=21%  Similarity=0.141  Sum_probs=84.1

Q ss_pred             CCEEeCCCCCCccCCchhcc-CCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecc
Q 036746          101 LQKLDLRNNSFTNAIPPQIG-HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTT  179 (281)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  179 (281)
                      =+.+++++.++. .+.. ++ -..+...+|+++|.+.  --+.|..++.|++|.+++|.++..-|..-..+++|..|.+.
T Consensus        21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc-chhh-ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            466777776654 1111 22 2356778899998875  23556778889999999999985555444556789999999


Q ss_pred             ccccccC-CCcccCCCCCCCEEEcccCcCcccC---CccCCCCCCCCEEEcccCc
Q 036746          180 ANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSI---PDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       180 ~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~~n~  230 (281)
                      +|++... .-+-+..++.|++|.+-+|+....-   .-.+..+++|+.||+..-.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            8887622 1133567788888888888876321   1234567888888876543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.78  E-value=0.00015  Score=52.98  Aligned_cols=122  Identities=18%  Similarity=0.240  Sum_probs=42.5

Q ss_pred             CCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCC
Q 036746          143 TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV  222 (281)
Q Consensus       143 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  222 (281)
                      |.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +.......+..+++++.+.+.+ .+.......+..+++++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            33344444444432 222222333444445555555442 2222223344554555555543 22212234455566666


Q ss_pred             EEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCC
Q 036746          223 NLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLR  271 (281)
Q Consensus       223 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~  271 (281)
                      .+.+..+ +.......+.+. +++.+.+.. .+. .++...+.++++|+
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK  129 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence            6666544 332333445554 667776655 333 45555555666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.54  E-value=0.00067  Score=49.55  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=47.1

Q ss_pred             hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCC
Q 036746          118 QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL  197 (281)
Q Consensus       118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  197 (281)
                      .|.++.+|+.+.+.. .+...-...|..+++|+.+.+..+ +.......|..+++++.+.+.. .........+..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344555566666553 333233344555556666666553 4323334455565666666654 2221222345556666


Q ss_pred             CEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCC
Q 036746          198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSI  245 (281)
Q Consensus       198 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  245 (281)
                      +.+.+..+ +.......+.+. .++.+.+.. .+...-...+.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66666554 332334455555 666666654 3322333445555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=9.8e-05  Score=59.48  Aligned_cols=84  Identities=19%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             cCCCCCCCEEEcccC--cCcccCCccCCCCCCCCEEEcccCcccc-ccChhccCCCCCcEEEcccCcccccCC--hhhhh
Q 036746          191 LGNLSSLRGLSLSRN--GFYGSIPDTFGGLKNLVNLSLVVNNLSG-TIPPSIFNISSIQTFDVGSTYIEGEMP--LDLGT  265 (281)
Q Consensus       191 l~~l~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~i~~~~p--~~~~~  265 (281)
                      +..+++|+.|.++.|  ++++.++.....+++|+++++++|++.. .--..+..+.+|..||+.+|..+..--  ..++.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            334455555555555  3333333333344555555555555541 000112334455566666655442110  12334


Q ss_pred             CCCCCCEEe
Q 036746          266 TLPNLRIFS  274 (281)
Q Consensus       266 ~~~~L~~L~  274 (281)
                      -+++|++||
T Consensus       141 ll~~L~~LD  149 (260)
T KOG2739|consen  141 LLPSLKYLD  149 (260)
T ss_pred             Hhhhhcccc
Confidence            455555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=5.6e-05  Score=60.85  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=19.1

Q ss_pred             ccCCCCCCEEEccCc--cCcccCCCCCCCCCCCcEEEccCCCCC
Q 036746          119 IGHLRRLQILYLQIN--SFDGEIPASTSNCSNLLVVSLALNHLV  160 (281)
Q Consensus       119 ~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~  160 (281)
                      |..+++|++|.++.|  .+.+.++.....+++|++++++.|++.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334445555555555  333333333333455555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=1.4e-05  Score=64.94  Aligned_cols=100  Identities=19%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             CCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccC-CccCCCCCCCCEE
Q 036746          146 CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNL  224 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L  224 (281)
                      +.+.+.|++-++.+..+  .....|+.|++|.++.|+++..  ..+..+++|++|+|..|.|.+.- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34555666666665522  2335667777777777777533  23666777777777777765221 1345667777777


Q ss_pred             EcccCccccccCh-----hccCCCCCcEEE
Q 036746          225 SLVVNNLSGTIPP-----SIFNISSIQTFD  249 (281)
Q Consensus       225 ~l~~n~l~~~~p~-----~l~~l~~L~~L~  249 (281)
                      .|..|.-.+.-+.     .+.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777766554432     344566666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=5.5e-05  Score=61.55  Aligned_cols=100  Identities=23%  Similarity=0.198  Sum_probs=78.0

Q ss_pred             CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC--hhccCCCCCcE
Q 036746          170 LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP--PSIFNISSIQT  247 (281)
Q Consensus       170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~  247 (281)
                      +.+.+.|+++++.+...  ....+|+.|++|.|+-|.|+..-  .+..+++|++|+|..|.|.+ +.  ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence            55677888998887632  23457889999999999998433  46789999999999998873 32  35678999999


Q ss_pred             EEcccCcccccCChh----hhhCCCCCCEEe
Q 036746          248 FDVGSTYIEGEMPLD----LGTTLPNLRIFS  274 (281)
Q Consensus       248 L~l~~n~i~~~~p~~----~~~~~~~L~~L~  274 (281)
                      |-|..|+..|..+..    +...+|+|++||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999988776654    345789999986

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.41  E-value=1.2e-05  Score=71.95  Aligned_cols=87  Identities=26%  Similarity=0.390  Sum_probs=44.1

Q ss_pred             CCCCCEEEcccCcCccc----CCccCCCCCC-CCEEEcccCccccc----cChhccCC-CCCcEEEcccCcccccCChhh
Q 036746          194 LSSLRGLSLSRNGFYGS----IPDTFGGLKN-LVNLSLVVNNLSGT----IPPSIFNI-SSIQTFDVGSTYIEGEMPLDL  263 (281)
Q Consensus       194 l~~L~~L~l~~n~~~~~----~p~~~~~l~~-L~~L~l~~n~l~~~----~p~~l~~l-~~L~~L~l~~n~i~~~~p~~~  263 (281)
                      ..++++|.+.+|.++..    ....+...+. +.++++..|.+.+.    +.+.+..+ .+++.++++.|.|++....++
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            44566666666655421    1122333333 55566666665432    22333333 455666677766665444332


Q ss_pred             h---hCCCCCCEEeccCccC
Q 036746          264 G---TTLPNLRIFSITGNQF  280 (281)
Q Consensus       264 ~---~~~~~L~~L~l~~N~l  280 (281)
                      .   ..++.++.+.++.|++
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcc
Confidence            2   2455666666666655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.02  E-value=0.003  Score=30.67  Aligned_cols=19  Identities=42%  Similarity=0.487  Sum_probs=10.0

Q ss_pred             CCEEEccCccCcccCCCCCC
Q 036746          125 LQILYLQINSFDGEIPASTS  144 (281)
Q Consensus       125 L~~L~l~~n~l~~~~~~~~~  144 (281)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.60  E-value=0.00063  Score=61.32  Aligned_cols=110  Identities=22%  Similarity=0.113  Sum_probs=44.4

Q ss_pred             CCCCCEEeCCCCCCccC--CchhccCCCCCCEEEccCc-cCcccCC----CCCCCCCCCcEEEccCCC-CCCCCCcccC-
Q 036746           98 LSFLQKLDLRNNSFTNA--IPPQIGHLRRLQILYLQIN-SFDGEIP----ASTSNCSNLLVVSLALNH-LVGKIPSEFG-  168 (281)
Q Consensus        98 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-~~~~~~~~l~-  168 (281)
                      .+.|+.+.+..+.-...  .......++.|+.|+++++ ......+    .....+.+|+.++++++. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555433222  1223334555666665542 1110111    112233555555555554 3321111111 


Q ss_pred             CCCCCcEEeccccc-cccC-CCcccCCCCCCCEEEcccCcC
Q 036746          169 SLSKLQFLSTTANN-LIGN-IPSSLGNLSSLRGLSLSRNGF  207 (281)
Q Consensus       169 ~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~~  207 (281)
                      .+++|+.|.+.++. ++.. +-.....+++|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            24555555544443 2211 111122344566666655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.34  E-value=0.0067  Score=29.40  Aligned_cols=11  Identities=45%  Similarity=0.425  Sum_probs=4.6

Q ss_pred             CEEEcccCccc
Q 036746          222 VNLSLVVNNLS  232 (281)
Q Consensus       222 ~~L~l~~n~l~  232 (281)
                      ++|++++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.83  E-value=0.0093  Score=53.70  Aligned_cols=130  Identities=22%  Similarity=0.144  Sum_probs=57.6

Q ss_pred             CCCCcEEEccCCCCCCC--CCcccCCCCCCcEEecccc-ccccCCC----cccCCCCCCCEEEcccCc-CcccCCccCC-
Q 036746          146 CSNLLVVSLALNHLVGK--IPSEFGSLSKLQFLSTTAN-NLIGNIP----SSLGNLSSLRGLSLSRNG-FYGSIPDTFG-  216 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~----~~l~~l~~L~~L~l~~n~-~~~~~p~~~~-  216 (281)
                      .+.|+.+.+..+.-...  +-+....++.|+.|+++++ ......+    .....+.+|+.++++++. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555554432212  2233445566666666542 1111111    122233556666666665 3322222222 


Q ss_pred             CCCCCCEEEcccCc-cccc-cChhccCCCCCcEEEcccCccc-ccCChhhhhCCCCCCEEec
Q 036746          217 GLKNLVNLSLVVNN-LSGT-IPPSIFNISSIQTFDVGSTYIE-GEMPLDLGTTLPNLRIFSI  275 (281)
Q Consensus       217 ~l~~L~~L~l~~n~-l~~~-~p~~l~~l~~L~~L~l~~n~i~-~~~p~~~~~~~~~L~~L~l  275 (281)
                      .+++|+.|.+..+. +++. +-.....++.|++|+++++... +..-..+..++++++.|.+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            25566666655554 3422 1222334556666666665432 2211222334555555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.56  E-value=0.024  Score=25.54  Aligned_cols=13  Identities=15%  Similarity=0.485  Sum_probs=4.4

Q ss_pred             CCcEEEcccCccc
Q 036746          244 SIQTFDVGSTYIE  256 (281)
Q Consensus       244 ~L~~L~l~~n~i~  256 (281)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.35  E-value=0.041  Score=27.71  Aligned_cols=22  Identities=9%  Similarity=0.333  Sum_probs=16.7

Q ss_pred             CCCCcEEEcccCcccccCChhhh
Q 036746          242 ISSIQTFDVGSTYIEGEMPLDLG  264 (281)
Q Consensus       242 l~~L~~L~l~~n~i~~~~p~~~~  264 (281)
                      +++|+.|++++|.|. .+|.+++
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            357788888888888 7777665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.35  E-value=0.041  Score=27.71  Aligned_cols=22  Identities=9%  Similarity=0.333  Sum_probs=16.7

Q ss_pred             CCCCcEEEcccCcccccCChhhh
Q 036746          242 ISSIQTFDVGSTYIEGEMPLDLG  264 (281)
Q Consensus       242 l~~L~~L~l~~n~i~~~~p~~~~  264 (281)
                      +++|+.|++++|.|. .+|.+++
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            357788888888888 7777665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.49  E-value=0.0014  Score=52.24  Aligned_cols=85  Identities=24%  Similarity=0.295  Sum_probs=71.8

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (281)
                      .+.+++.||++.+++. .+...|..+..+..|+++.|.+. -.|..+.....++.+++..|+.+ ..|.++...++++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            4578999999998875 44455777788899999999887 68888888889999999999988 889999999999999


Q ss_pred             EccCCCCC
Q 036746          153 SLALNHLV  160 (281)
Q Consensus       153 ~l~~n~~~  160 (281)
                      +...|.+.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99888765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.85  E-value=0.00044  Score=62.07  Aligned_cols=110  Identities=22%  Similarity=0.256  Sum_probs=65.8

Q ss_pred             CCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCcc----cCCc----cCCCCCCCCEEEcccCcccccc----
Q 036746          172 KLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYG----SIPD----TFGGLKNLVNLSLVVNNLSGTI----  235 (281)
Q Consensus       172 ~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~p~----~~~~l~~L~~L~l~~n~l~~~~----  235 (281)
                      .++.|.+..|.++..    +++.+.....++.++++.|.+..    .++.    .+....++++|++.+|.++...    
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            344455554544322    22334445566667776666531    1222    3345788999999999887321    


Q ss_pred             ChhccCCCC-CcEEEcccCcccccCChhhhh---CC-CCCCEEeccCccCC
Q 036746          236 PPSIFNISS-IQTFDVGSTYIEGEMPLDLGT---TL-PNLRIFSITGNQFT  281 (281)
Q Consensus       236 p~~l~~l~~-L~~L~l~~n~i~~~~p~~~~~---~~-~~L~~L~l~~N~lt  281 (281)
                      ...+...++ +..|++..|.+.+..-..+..   .+ +.++.++++.|.|+
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~  275 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT  275 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence            223444455 677999999988543333222   33 56699999999875

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.92  E-value=0.0027  Score=50.65  Aligned_cols=90  Identities=23%  Similarity=0.238  Sum_probs=69.1

Q ss_pred             cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCC
Q 036746          165 SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISS  244 (281)
Q Consensus       165 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  244 (281)
                      ..+......+.||++.|.+. .+...++.++.+..++++.|++. ..|..++....++.++...|... ..|.++...++
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            34556677788888888765 45566777778888888888886 77888887777788887777776 67888888888


Q ss_pred             CcEEEcccCcccc
Q 036746          245 IQTFDVGSTYIEG  257 (281)
Q Consensus       245 L~~L~l~~n~i~~  257 (281)
                      ++.+++.+|.+..
T Consensus       113 ~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  113 PKKNEQKKTEFFR  125 (326)
T ss_pred             cchhhhccCcchH
Confidence            8888888887763

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.32  E-value=0.11  Score=25.59  Aligned_cols=17  Identities=24%  Similarity=0.413  Sum_probs=8.7

Q ss_pred             CCCcEEEcccCcccccC
Q 036746          243 SSIQTFDVGSTYIEGEM  259 (281)
Q Consensus       243 ~~L~~L~l~~n~i~~~~  259 (281)
                      ++|++|++++|+|++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            45666666666665433

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.83  E-value=0.37  Score=24.35  Aligned_cols=13  Identities=23%  Similarity=0.455  Sum_probs=7.1

Q ss_pred             CCCCEEeccCccC
Q 036746          268 PNLRIFSITGNQF  280 (281)
Q Consensus       268 ~~L~~L~l~~N~l  280 (281)
                      .+|+.|+++.|+|
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            3455555555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.43  E-value=0.087  Score=41.31  Aligned_cols=36  Identities=11%  Similarity=0.066  Sum_probs=19.7

Q ss_pred             CCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccc
Q 036746          147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN  182 (281)
Q Consensus       147 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  182 (281)
                      ..++.++-++..+..+--+.+..++.++.|.+.+++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            445666666666554433445555555555555544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.69  E-value=0.54  Score=24.11  Aligned_cols=13  Identities=31%  Similarity=0.743  Sum_probs=8.1

Q ss_pred             CCCCEEeccCccC
Q 036746          268 PNLRIFSITGNQF  280 (281)
Q Consensus       268 ~~L~~L~l~~N~l  280 (281)
                      ++|++|||++|.|
T Consensus         2 ~~L~~LdL~~N~i   14 (28)
T smart00368        2 PSLRELDLSNNKL   14 (28)
T ss_pred             CccCEEECCCCCC
Confidence            4566666666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=86.60  E-value=0.25  Score=43.03  Aligned_cols=157  Identities=17%  Similarity=0.142  Sum_probs=70.9

Q ss_pred             CCCCCEEEccCccC-cccC-CCCCCCCCCCcEEEccCCCCCCCCC--cccCCCCCCcEEeccccccccCCC-ccc-CCCC
Q 036746          122 LRRLQILYLQINSF-DGEI-PASTSNCSNLLVVSLALNHLVGKIP--SEFGSLSKLQFLSTTANNLIGNIP-SSL-GNLS  195 (281)
Q Consensus       122 l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~-~~l-~~l~  195 (281)
                      +..+..+++.+|.. +.+- -..-..+..|+.++.+++...+..+  ..-.+.++|+++.+..++.-+... ..+ .+.+
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            44556666555532 2110 0111235667777766654321111  112345677777776665321111 111 2345


Q ss_pred             CCCEEEcccCcCc--ccCCccCCCCCCCCEEEcccCcc-ccc----cChhccCCCCCcEEEcccCcccccCChhhhhCCC
Q 036746          196 SLRGLSLSRNGFY--GSIPDTFGGLKNLVNLSLVVNNL-SGT----IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLP  268 (281)
Q Consensus       196 ~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l-~~~----~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~  268 (281)
                      .|+.+++..+...  +.+.+.-.+++.|+++.++++.. ++.    +...-..+..++.+.+++++....--......++
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            5666666655432  11222333556666666666543 211    0111223455666666666533221112223556


Q ss_pred             CCCEEeccCc
Q 036746          269 NLRIFSITGN  278 (281)
Q Consensus       269 ~L~~L~l~~N  278 (281)
                      +|+.+++.++
T Consensus       427 ~Leri~l~~~  436 (483)
T KOG4341|consen  427 NLERIELIDC  436 (483)
T ss_pred             ccceeeeech
Confidence            6666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=85.00  E-value=0.49  Score=41.32  Aligned_cols=112  Identities=18%  Similarity=0.121  Sum_probs=58.8

Q ss_pred             CCCCCcEEeccccccccCCC-ccc-CCCCCCCEEEcccCcC-cccCCccC-CCCCCCCEEEcccCccc--cccChhccCC
Q 036746          169 SLSKLQFLSTTANNLIGNIP-SSL-GNLSSLRGLSLSRNGF-YGSIPDTF-GGLKNLVNLSLVVNNLS--GTIPPSIFNI  242 (281)
Q Consensus       169 ~l~~L~~L~l~~n~~~~~~~-~~l-~~l~~L~~L~l~~n~~-~~~~p~~~-~~l~~L~~L~l~~n~l~--~~~p~~l~~l  242 (281)
                      .+..|+.++.+++...+..+ ..+ .+..+|+.+.+.+++- +..-...+ .++..|+.+++..+...  +.+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            45667777776654322211 112 2446788888877753 21111222 24677777777766542  1122233356


Q ss_pred             CCCcEEEcccCc-ccccCC---hhhhhCCCCCCEEeccCccC
Q 036746          243 SSIQTFDVGSTY-IEGEMP---LDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       243 ~~L~~L~l~~n~-i~~~~p---~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +.|+.+.++.+. |++..-   .....++..|+.+.+++++.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence            778888887764 332211   11112455677777776654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.02  E-value=0.47  Score=37.35  Aligned_cols=81  Identities=17%  Similarity=0.124  Sum_probs=57.0

Q ss_pred             CCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc-cChhcc-CCCCCcEEEcccC-cccccCChhhhhCCCCCCE
Q 036746          196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT-IPPSIF-NISSIQTFDVGST-YIEGEMPLDLGTTLPNLRI  272 (281)
Q Consensus       196 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~l~-~l~~L~~L~l~~n-~i~~~~p~~~~~~~~~L~~  272 (281)
                      .++.++.++..+...--+.+.+++.++.|.+..+.--+. --..++ -.++|+.|++++| .|++..-..+. .+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence            478899899888766666777888888888877753221 111111 3478999999999 57754444554 7899999


Q ss_pred             EeccC
Q 036746          273 FSITG  277 (281)
Q Consensus       273 L~l~~  277 (281)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            88765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-16
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-12
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		1e-05

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 87/195 (44%), Gaps = 3/195 (1%)
Query: 73  RYQRVTILDLQNLKLVGTLSPHIGNLSF-LQKLDLRNNSFTNAIPPQIGHLRR--LQILY 129
           + + + +LDL   +  G L   + NLS  L  LDL +N+F+  I P +    +  LQ LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPX 189
           LQ N F G+IP + SNCS L+ + L+ N+L G IPS  GSLSKL+ L    N L G IP 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFD 249
                              G IP                    G IP  I  + ++    
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 250 VGSTYIEGEMPLDLG 264
           + +    G +P +LG
Sbjct: 521 LSNNSFSGNIPAELG 535

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 87/195 (44%), Gaps = 3/195 (1%)
Query: 73  RYQRVTILDLQNLKLVGTLSPHIGNLSF-LQKLDLRNNSFTNAIPPQIGHLRR--LQILY 129
           + + + +LDL   +  G L   + NLS  L  LDL +N+F+  I P +    +  LQ LY
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPX 189
           LQ N F G+IP + SNCS L+ + L+ N+L G IPS  GSLSKL+ L    N L G IP 
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPSIFNISSIQTFD 249
                              G IP                    G IP  I  + ++    
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 250 VGSTYIEGEMPLDLG 264
           + +    G +P +LG
Sbjct: 518 LSNNSFSGNIPAELG 532

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 34/190 (17%)
Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQ--WYGVTCSPRYQ--RVTILDLQNLK 86
           N  D+ ALL+ K  + N     L SW  +   C   W GV C    Q  RV  LDL  L 
Sbjct: 4   NPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 87  L---------------------------VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI 119
           L                           VG + P I  L+ L  L + + + + AIP  +
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 120 GHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKL-QFLST 178
             ++ L  L    N+  G +P S S+  NL+ ++   N + G IP  +GS SKL   ++ 
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 179 TANNLIGNIP 188
           + N L G IP
Sbjct: 182 SRNRLTGKIP 191

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI 139
           LDL NL++   +S +I    FL +L L  NS T  +P +I +L  L++L L  N     +
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 140 PASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL 183
           PA   +C  L       +++V  +P EFG+L  LQFL    N L
Sbjct: 286 PAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPL 328

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  225 bits (575), Expect = 7e-73
 Identities = 76/259 (29%), Positives = 109/259 (42%), Gaps = 13/259 (5%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQ--WYGVTCSPRYQ--RVTILDLQNLK 86
           N  D+ ALL+ K  + N     L SW  +   C   W GV C    Q  RV  LDL  L 
Sbjct: 4   NPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 87  LVGT--LSPHIGNLSFLQKLDLRN-NSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST 143
           L     +   + NL +L  L +   N+    IPP I  L +L  LY+   +  G IP   
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 144 SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL-RGLSL 202
           S    L+ +  + N L G +P    SL  L  ++   N + G IP S G+ S L   +++
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 203 SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLD 262
           SRN   G IP TF  L NL  + L  N L G       +  + Q   +    +  ++   
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-K 239

Query: 263 LGTTLPNLRIFSITGNQFT 281
           +G    NL    +  N+  
Sbjct: 240 VG-LSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  167 bits (425), Expect = 2e-50
 Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 5/205 (2%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
            ++  L + +  + G +   +  +  L  LD   N+ +  +PP I  L  L  +    N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 135 FDGEIPASTSNCSNLLVV-SLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
             G IP S  + S L    +++ N L GKIP  F +L+ L F+  + N L G+     G+
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS 219

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253
             + + + L++N     +    G  KNL  L L  N + GT+P  +  +  + + +V   
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGN 278
            + GE+P   G  L    + +   N
Sbjct: 279 NLCGEIP--QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (318), Expect = 1e-34
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 5/163 (3%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFL-QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
             +     ++ G +    G+ S L   + +  N  T  IPP   +L  L  + L  N  +
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
           G+      +  N   + LA N L   +    G    L  L    N + G +P  L  L  
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN-LSGTIPPS 238
           L  L++S N   G IP   G L+     +   N  L G+  P+
Sbjct: 270 LHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPA 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  200 bits (512), Expect = 2e-59
 Identities = 65/267 (24%), Positives = 113/267 (42%), Gaps = 18/267 (6%)

Query: 24  SAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQ 83
            A        +   L+ FK  + +    +L  W+ + + C + GVTC     +VT +DL 
Sbjct: 3   QASPSQSLYREIHQLISFKDVLPDK--NLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLS 58

Query: 84  NLKL---VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP 140
           +  L      +S  + +L+ L+ L L N+    ++         L  L L  NS  G + 
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVT 117

Query: 141 ASTS--NCSNLLVVSLALNHLVGKIP-SEFGSLSKLQFLSTTANNLIGNIPSSL---GNL 194
             TS  +CS L  ++++ N L      S    L+ L+ L  +AN++ G            
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254
             L+ L++S N   G +        NL  L +  NN S  I P + + S++Q  D+    
Sbjct: 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNK 234

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281
           + G+    +  T   L++ +I+ NQF 
Sbjct: 235 LSGDFSRAIS-TCTELKLLNISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  175 bits (446), Expect = 3e-50
 Identities = 64/208 (30%), Positives = 95/208 (45%), Gaps = 7/208 (3%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             LD+ +      + P +G+ S LQ LD+  N  +      I     L++L +  N F G
Sbjct: 203 EFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
            IP       +L  +SLA N   G+IP    G+   L  L  + N+  G +P   G+ S 
Sbjct: 262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 197 LRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS-SIQTFDVGSTY 254
           L  L+LS N F G +P DT   ++ L  L L  N  SG +P S+ N+S S+ T D+ S  
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 255 IEGEMPLDLG-TTLPNLRIFSITGNQFT 281
             G +  +L       L+   +  N FT
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (431), Expect = 4e-48
 Identities = 69/205 (33%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 78  TILDLQNLKLVGTLSPHIGN--LSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF 135
             LDL +    G + P++     + LQ+L L+NN FT  IPP + +   L  L+L  N  
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

Query: 136 DGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
            G IP+S  + S L  + L LN L G+IP E   +  L+ L    N+L G IPS L N +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI 255
           +L  +SLS N   G IP   G L+NL  L L  N+ SG IP  + +  S+   D+ +   
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

Query: 256 EGEMPLDLGTTLPNLRIFSITGNQF 280
            G +P  +      +    I G ++
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (427), Expect = 1e-47
 Identities = 68/208 (32%), Positives = 99/208 (47%), Gaps = 5/208 (2%)

Query: 78  TILDLQNLKLVGTLSP-HIGNLSFLQKLDLRNNSFTNAIPPQIGHLR-RLQILYLQINSF 135
             L L +    G L    +  +  L+ LDL  N F+  +P  + +L   L  L L  N+F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 136 DGEIPASTSNC--SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
            G I  +      + L  + L  N   GKIP    + S+L  L  + N L G IPSSLG+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253
           LS LR L L  N   G IP     +K L  L L  N+L+G IP  + N +++    + + 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            + GE+P  +G  L NL I  ++ N F+
Sbjct: 501 RLTGEIPKWIGR-LENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  167 bits (426), Expect = 2e-47
 Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 5/201 (2%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L LQN    G + P + N S L  L L  N  +  IP  +G L +L+ L L +N  +G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
           EIP        L  + L  N L G+IPS   + + L ++S + N L G IP  +G L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
             L LS N F G+IP   G  ++L+ L L  N  +GTIP ++F     Q+  + + +I G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAG 572

Query: 258 EMPLDLGTTLPNLRIFSITGN 278
           +  + +       +     GN
Sbjct: 573 KRYVYIK-NDGMKKECHGAGN 592

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (414), Expect = 7e-46
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)

Query: 78  TILDLQNLKLVGTLSPHI---GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
            +LDL    + G              L+ L +  N  +  +   +     L+ L +  N+
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
           F   IP    +CS L  + ++ N L G       + ++L+ L+ ++N  +G IP     L
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268

Query: 195 SSLRGLSLSRNGFYGSIPDTFGG-LKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253
            SL+ LSL+ N F G IPD   G    L  L L  N+  G +PP   + S +++  + S 
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              GE+P+D    +  L++  ++ N+F+
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (353), Expect = 1e-37
 Identities = 45/203 (22%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN--SF 135
             LDL      GT+   +   S      +  N         I +    +  +   N   F
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 136 DGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
            G      +  S     ++      G     F +   + FL  + N L G IP  +G++ 
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI 255
            L  L+L  N   GSIPD  G L+ L  L L  N L G IP ++  ++ +   D+ +  +
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 256 EGEMPLDLGTTLPNLRIFSITGN 278
            G +P                 N
Sbjct: 717 SGPIP--EMGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 4e-22
 Identities = 34/114 (29%), Positives = 51/114 (44%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
               ++ +    G  SP   N   +  LD+  N  +  IP +IG +  L IL L  N   
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS 190
           G IP    +   L ++ L+ N L G+IP    +L+ L  +  + NNL G IP  
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (323), Expect = 1e-33
 Identities = 48/208 (23%), Positives = 75/208 (36%), Gaps = 5/208 (2%)

Query: 78  TILDLQN--LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF 135
             LDL    L   G  S      + L+ LDL  N     +      L +L+ L  Q ++ 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 136 DGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNI-PSSLGN 193
                 S   +  NL+ + ++  H        F  LS L+ L    N+   N  P     
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253
           L +L  L LS+       P  F  L +L  L++  NN           ++S+Q  D    
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +I      +L     +L   ++T N F 
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (315), Expect = 1e-32
 Identities = 42/210 (20%), Positives = 67/210 (31%), Gaps = 6/210 (2%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
              LDL    L    S    +   LQ LDL               L  L  L L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLS 195
                + S  S+L  +     +L        G L  L+ L+   N +    +P    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNL----VNLSLVVNNLSGTIPPSIFNISSIQTFDVG 251
           +L  L LS N            L  +    ++L L +N ++  I P  F    +    + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208

Query: 252 STYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           + +    +       L  L +  +   +F 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  110 bits (276), Expect = 2e-27
 Identities = 47/191 (24%), Positives = 69/191 (36%), Gaps = 5/191 (2%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
             LD Q+  L       +  +L  L  LD+ +     A       L  L++L +  NSF 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 137 GEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
                   +   NL  + L+   L    P+ F SLS LQ L+ + NN           L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 196 SLRGLSLSRNGFYGSIPDTFGGL-KNLVNLSLVVNNLSGTIPPSIF--NISSIQTFDVGS 252
           SL+ L  S N    S          +L  L+L  N+ + T     F   I   +   V  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578

Query: 253 TYIEGEMPLDL 263
             +E   P D 
Sbjct: 579 ERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (269), Expect = 2e-26
 Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 9/217 (4%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
            +  + +LDL   ++         +LS L  L L  N   +        L  LQ L    
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 133 NSFDGEIPASTSNCSNLLVVSLALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSL 191
            +          +   L  +++A N +   K+P  F +L+ L+ L  ++N +     + L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 192 GNLSSLR----GLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQ 246
             L  +      L LS N      P  F  +  L  L+L  N  S  +  +    ++ ++
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 247 TFDVGSTYIEGEMPLDLGT--TLPNLRIFSITGNQFT 281
              +       E  L+      L  L   +I   +  
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (253), Expect = 2e-24
 Identities = 37/210 (17%), Positives = 70/210 (33%), Gaps = 11/210 (5%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
             V+   L ++ +              Q L+L N  F      ++  L+RL     +   
Sbjct: 282 TNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG- 338

Query: 135 FDGEIPASTSNCSNLLVVSLALNHL--VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG 192
                  S  +  +L  + L+ N L   G         + L++L  + N +I  + S+  
Sbjct: 339 ----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393

Query: 193 NLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVG 251
            L  L  L    +          F  L+NL+ L +   +           +SS++   + 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 252 STYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
               +     D+ T L NL    ++  Q  
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 13/217 (5%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
           + L L    +          LS LQKL     +  +     IGHL+ L+ L +  N    
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 138 -EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTT---ANNLIGNIPSSLGN 193
            ++P   SN +NL  + L+ N +     ++   L ++  L+ +   + N +  I      
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 194 LSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS--------S 244
              L  L+L  N    ++      GL  L    LV+           F+ S        +
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 245 IQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           I+ F +       +  +DL   L N+  FS+      
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 2e-23
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 5/177 (2%)

Query: 103 KLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGK 162
                  +F   IP  +      + L L  N        S  +   L V+ L+   +   
Sbjct: 11  TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 163 IPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV 222
               + SLS L  L  T N +      +   LSSL+ L               G LK L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 223 NLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278
            L++  N +     P  F N+++++  D+ S  I+     DL   L  + + +++ +
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLD 183

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 29/135 (21%), Positives = 52/135 (38%)

Query: 147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG 206
            +   + L+ N L       F S  +LQ L  +   +      +  +LS L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 207 FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTT 266
                   F GL +L  L  V  NL+      I ++ +++  +V    I+     +  + 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 267 LPNLRIFSITGNQFT 281
           L NL    ++ N+  
Sbjct: 148 LTNLEHLDLSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 19/216 (8%)

Query: 78  TILDLQNLKLVGT-LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQI----LYLQI 132
             L++ +  +    L  +  NL+ L+ LDL +N   +     +  L ++ +    L L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLS------TTANNLIG 185
           N  +  I         L  ++L  N     +       L+ L+             NL  
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 186 NIPSSLGNLSSLRGLSLSRN---GFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNI 242
              S+L  L +L            +   I D F  L N+ + SLV   +   +    +N 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN- 303

Query: 243 SSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278
              Q  ++ +    G+ P     +L  L   S  G 
Sbjct: 304 FGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGG 338

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 4/132 (3%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
           + +T LDL   +L         +LS LQ L++ +N+F +        L  LQ+L   +N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 135 FDGEIPASTSNC-SNLLVVSLALNHLVGKIPSE--FGSLSKLQFLSTTANNLIGNIPSSL 191
                     +  S+L  ++L  N        +     +   + L      +    PS  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

Query: 192 GNLSSLRGLSLS 203
             +  +  L+++
Sbjct: 590 QGM-PVLSLNIT 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (318), Expect = 7e-33
 Identities = 48/215 (22%), Positives = 77/215 (35%), Gaps = 11/215 (5%)

Query: 78  TILDLQNLKLVGTLSPH-IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
            +LDL   ++   L+      L  + ++ L  N +          +  LQ L L+  +  
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 137 G--EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL--------IGN 186
                P+      NL ++ L+ N++          L KL+ L    NNL         G 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ 246
               L  LS L  L+L  NGF     + F  L  L  + L +NNL+        N  S++
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           + ++    I        G    NL    +  N F 
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  124 bits (314), Expect = 2e-32
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 4/209 (1%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
           +T+L+L + +L    + +    S L  LD+  N+ +   P     L  L++L LQ N   
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
                + + C+NL  + L  N +     + F     L  L  + N L      +   L +
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKN--LVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254
           L+ L LS N       +      N  L  L L  N +    P     I  +    + +  
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 255 IEGEMP--LDLGTTLPNLRIFSITGNQFT 281
           +   +   L L     ++R  S++ +Q +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLS 235

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (290), Expect = 3e-29
 Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 6/215 (2%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
           RY ++T LD+    +          L  L+ L+L++N  +            L  L+L  
Sbjct: 47  RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106

Query: 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG 192
           NS             NL+ + L+ N L          L  LQ L  + N +       L 
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 193 --NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF---NISSIQT 247
               SSL+ L LS N      P  F  +  L  L L    L  ++   +      +SI+ 
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 248 FDVGSTYIEGEMPLDL-GTTLPNLRIFSITGNQFT 281
             + ++ +         G    NL +  ++ N   
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (289), Expect = 5e-29
 Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 6/206 (2%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
            + D  +LKL   +   +   + +  L+L +N              +L  L +  N+   
Sbjct: 7   EVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
             P        L V++L  N L       F   + L  L   +N++     +      +L
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP--SIFNISSIQTFDVGSTYI 255
             L LS NG   +   T   L+NL  L L  N +         IF  SS++  ++ S  I
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 256 EGEMPLDLGTTLPNLRIFSITGNQFT 281
           +   P      +  L    +   Q  
Sbjct: 184 KEFSPGCFH-AIGRLFGLFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (273), Expect = 6e-27
 Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 4/182 (2%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
            +  D  +   T  +P  +     + +L L  N       A+ +  S L  + +  N + 
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 161 GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN 220
              P     L  L+ L+   N L      +    ++L  L L  N       + F   KN
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 221 LVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGT-TLPNLRIFSITGNQ 279
           L+ L L  N LS T   +   + ++Q   + +  I+     +L      +L+   ++ NQ
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 280 FT 281
             
Sbjct: 183 IK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (264), Expect = 9e-26
 Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 17/219 (7%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQ------ 131
           T+LDL    L    +     L  L+   L  N+  +     +  L  ++ L L+      
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 132 ---INSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLS-----TTANNL 183
              + S       S      L  +++  N + G   + F  L  L++LS     T+   L
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 184 IGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NI 242
                 SL + S L  L+L++N       D F  L +L  L L +N +   +    +  +
Sbjct: 371 TNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 243 SSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +I    +                +P+L+   +      
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  104 bits (262), Expect = 2e-25
 Identities = 41/221 (18%), Positives = 77/221 (34%), Gaps = 15/221 (6%)

Query: 76  RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNN---------SFTNAIPPQIGHLRRLQ 126
           ++    L+   +    S  +  L  ++ L+L+ +         S           L+ L+
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSE--FGSL--SKLQFLSTTANN 182
            L ++ N   G      +   NL  +SL+ +    +  +   F SL  S L  L+ T N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 183 LIGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
           +      +   L  L  L L  N     +    + GL+N+  + L  N        S   
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 242 ISSIQTFDVGSTYIEG-EMPLDLGTTLPNLRIFSITGNQFT 281
           + S+Q   +    ++  +        L NL I  ++ N   
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (256), Expect = 1e-24
 Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 17/221 (7%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG---HLRRLQILYLQINS 134
             L+L + ++          +  L  L L N     ++  ++        ++ L L  + 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 135 FDGEIPASTSNC--SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG 192
                  +      +NL ++ L+ N+L       F  L +L++     NN+      SL 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 193 NLSSLRGLSLSRNGFYGSI---------PDTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS 243
            L ++R L+L R+    SI           +F  LK L +L++  N++ G        + 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 244 SIQTFDVGSTYIEGEMPLD---LGTTLPNLRIFSITGNQFT 281
           +++   + +++       +   +      L I ++T N+ +
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 9e-24
 Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNN--SFTNAIPPQIGHL--RRLQILYL 130
           + +  L++++  + G  S     L  L+ L L N+  S           L    L IL L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 131 QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIP-SEFGSLSKLQFLSTTANNLIGNIPS 189
             N        + S   +L V+ L LN +  ++   E+  L  +  +  + N  +    +
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

Query: 190 SLGNLSSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT 247
           S   + SL+ L L R       S P  F  L+NL  L L  NN++      +  +  ++ 
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

Query: 248 FDVGSTYIE-------GEMPLDLGTTLPNLRIFSITGNQFT 281
            D+    +           P+     L +L I ++  N F 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 10/159 (6%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFT--------NAIPPQIGHLRRLQILY 129
           TILDL N  +       +  L  L+ LDL++N+                +  L  L IL 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS 189
           L+ N FD        +   L ++ L LN+L     S F +   L+ L+   N +      
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 190 SLG-NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227
             G    +L  L +  N F  +  ++     N +N +  
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTC-ESIAWFVNWINETHT 640

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 3/130 (2%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
             + IL+L++            +L  L+ +DL  N+          +   L+ L LQ N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 135 FDGEIPAS-TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
                         NL  + +  N       S    ++ +    T    L  +   +   
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNT-- 653

Query: 194 LSSLRGLSLS 203
                G  + 
Sbjct: 654 PPHYHGFPVR 663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  117 bits (296), Expect = 5e-30
 Identities = 26/217 (11%), Positives = 72/217 (33%), Gaps = 17/217 (7%)

Query: 74  YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN 133
           +  +    + +     ++           ++   +N+ T  +   +  L +L+  Y+  +
Sbjct: 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNS 216

Query: 134 SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
            F  E       C      +            ++ +L  L  +       +  +P+ L  
Sbjct: 217 PFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 194 LSSLRGLSLSRNGF--------YGSIPDTFGGLKNLVNLSLVVNNL-SGTIPPSIFNISS 244
           L  ++ ++++ N                     + +  + +  NNL +  +  S+  +  
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 245 IQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +   +     +EG++P   G +   L   ++  NQ T
Sbjct: 332 LGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQIT 366

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (284), Expect = 2e-28
 Identities = 32/257 (12%), Positives = 62/257 (24%), Gaps = 55/257 (21%)

Query: 53  LGSWNDSIHFCQWY---GVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNN 109
             +WN +     W    GV+                           +   +  L L   
Sbjct: 57  GANWNFNKELDMWGAQPGVSL-------------------------NSNGRVTGLSLEGF 91

Query: 110 SFTNAIPPQIGHLRRLQILYLQINSFDG----EIPASTSNCSNLLVVSLALNHLVGKIPS 165
             +  +P  IG L  L++L L  +          P   S   +         H       
Sbjct: 92  GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151

Query: 166 EFG--SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223
                  S L      ++    +I  S         +    N     +      L  L  
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQ 210

Query: 224 LSLVVNNLSG-------------------TIPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264
             +  +                       T      N+  +   +V +     ++P  L 
Sbjct: 211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 265 TTLPNLRIFSITGNQFT 281
             LP +++ ++  N+  
Sbjct: 271 -ALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  112 bits (282), Expect = 3e-28
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 19/221 (8%)

Query: 78  TILDLQNLKL-VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
            I+ +    L    +   +  +  L  L+   N       P  G   +L  L L  N   
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQIT 366

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPS--EFGSLSKLQFL-------STTANNLIGNI 187
                       +  +S A N L   IP+  +  S+S +  +        +        +
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 188 PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG-------TIPPSIF 240
             +     ++  ++LS N       + F     L +++L+ N L+            +  
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485

Query: 241 NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           N   + + D+    +         TTLP L    ++ N F+
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (260), Expect = 3e-25
 Identities = 38/229 (16%), Positives = 60/229 (26%), Gaps = 33/229 (14%)

Query: 78  TILDLQNLKLVGTLSPH-IGNLSFLQKLDLRNNSFT-------NAIPPQIGHLRRLQILY 129
             L   + KL    +     ++S +  +D   N          + + P       +  + 
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVG-------KIPSEFGSLSKLQFLSTTANN 182
           L  N          S  S L  ++L  N L              F +   L  +    N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 183 LIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV------NLSLVVNNLSGTI 235
           L           L  L G+ LS N F    P        L             N      
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 236 PPSIFNISSIQTFDVGS---TYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           P  I    S+    +GS     +  ++        PN+ +  I  N   
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKI-------TPNISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 2e-23
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 20/179 (11%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFT-------NAIPPQIGHLRRLQILYL 130
           + ++L N ++           S L  ++L  N  T               +   L  + L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 131 QINSFDGEIPAS--TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLS------TTANN 182
           + N     +      +    L+ + L+ N      P++  + S L+            N 
Sbjct: 496 RFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 183 LIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
            +   P  +    SL  L +  N     + +      N+  L +  N         +  
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCP 609

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (281), Expect = 5e-28
 Identities = 35/207 (16%), Positives = 60/207 (28%), Gaps = 2/207 (0%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
              L+     L    +     L  L  LDL                 RL  L L  N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
                + S    L  +      +         +   L+ L   +N++             
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS-GTIPPSIFNISSIQTFDVGSTYI 255
           L+ L    N  +    +    L+   NLSL +N      I P  F+ +  Q+ + G T  
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 256 EGEMPLDL-GTTLPNLRIFSITGNQFT 281
              +   L  +T+ +L + +       
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  109 bits (274), Expect = 4e-27
 Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 6/210 (2%)

Query: 76  RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF 135
            V  ++LQ        S      S LQ+LDL     +  +P  +  L  L+ L L  N F
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKF 313

Query: 136 DGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNL--IGNIPSSLG 192
           +     S SN  +L  +S+  N    ++ +    +L  L+ L  + +++         L 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVG 251
           NLS L+ L+LS N       + F     L  L L    L      S F N+  ++  ++ 
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 252 STYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            + ++      L   LP L+  ++ GN F 
Sbjct: 434 HSLLDI-SSEQLFDGLPALQHLNLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 95.9 bits (239), Expect = 2e-22
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 10/213 (4%)

Query: 76  RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPP-----QIGHLRRLQILYL 130
               L+L    +   + P   + +  Q L+         I        I  L       +
Sbjct: 180 TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 131 QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS 190
                   +        ++  ++L  ++      + F   S LQ L       +  +PS 
Sbjct: 239 DDEDISPAVFEGLCE-MSVESINLQKHYFFNISSNTFHCFSGLQELDL-TATHLSELPSG 296

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFD 249
           L  LS+L+ L LS N F      +     +L +LS+  N     +      N+ +++  D
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 250 VGSTYIEG-EMPLDLGTTLPNLRIFSITGNQFT 281
           +    IE  +        L +L+  +++ N+  
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 8e-21
 Identities = 36/213 (16%), Positives = 61/213 (28%), Gaps = 4/213 (1%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
           R   +T LDL   ++         +   L  L L  N         +   + L+ L+   
Sbjct: 55  RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG 192
                       N   L  + L  NH+      +     KL+ L    N +       + 
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 193 NLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN--ISSIQTFD 249
           +L     LSL+ NG     I           +L+         I   + N  I S+    
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 250 VGSTYIEGEMPLDL-GTTLPNLRIFSITGNQFT 281
                 E   P    G    ++   ++  + F 
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 8e-21
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 5/179 (2%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPP-QIGHLRRLQILYLQINSFD 136
             L+L   + +   +        L+ LDL               +L  L++L L  +  D
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKI---PSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
                       L  ++L  NH         +   +L +L+ L  +  +L      +  +
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGS 252
           L  +  + LS N    S  +    LK +  L+L  N++S  +P  +  +S  +T ++  
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 5e-19
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 5/161 (3%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---QIN 133
            +LDL   +L    +     NL  L+ L+L ++    +       L  LQ L L      
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 134 SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
             + +   S      L ++ L+   L       F SL  +  +  + N L  +   +L +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234
           L  +  L+L+ N     +P     L     ++L  N L  T
Sbjct: 523 LKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 1/135 (0%)

Query: 147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG 206
           ++   +  + N L     + F  L  L FL  T   +      +  +   L  L L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 207 FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTT 266
                     G K L +L  +   +S      + N  ++++  +GS +I   + L  G  
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFP 151

Query: 267 LPNLRIFSITGNQFT 281
              L++     N   
Sbjct: 152 TEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 36/178 (20%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI---PPQIGHLRRLQILYLQINS 134
            +L+L +  L  +       L  LQ L+L+ N F          +  L RL+IL L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
                  + ++   +  V L+ N L          L  +  L+  +N++   +PS L  L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPIL 546

Query: 195 SSLRGLSLSRNGFYGS----------------IPD----TFGGLKNLVNLSLVVNNLS 232
           S  R ++L +N    +                + D           L  + L    LS
Sbjct: 547 SQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 76  RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF 135
           R+ IL L    L         +L  +  +DL +N  T++    + HL+ +  L L  N  
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

Query: 136 DGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
              +P+     S    ++L  N L         ++  L++       L     +   N  
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC----TCSNIYFLEWYKENMQKLEDTEDTLCENPP 591

Query: 196 SLRGLSLSRN 205
            LRG+ LS  
Sbjct: 592 LLRGVRLSDV 601

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (280), Expect = 7e-28
 Identities = 48/322 (14%), Positives = 78/322 (24%), Gaps = 69/322 (21%)

Query: 29  SGNETDRAALLEFKSKI----------TNDALGVLGSWNDSIHFCQWYGVTCS--PRYQR 76
           +    D  AL      +          T +      +WN +     W            R
Sbjct: 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR 324

Query: 77  VTILDLQNLKLVGTLSPHIGNLSF------------------------LQKLDLRNNSFT 112
           VT L L      G +   IG L+                             + R +   
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 113 NAIPPQIG----HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL-ALNHLVGKIPSEF 167
                        L    +L   IN      P    +  +L    +  L + +  I    
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 168 GSLSKLQFL-------------------STTANNLIGNIPSSLGNLSSLRGLSLSRNGFY 208
             L+KLQ +                   ++       N   S  NL  L  + L      
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 209 GSIPDTFGGLKNLVNLSLVVNNLSG---------TIPPSIFNISSIQTFDVGSTYIEGEM 259
             +PD    L  L +L++  N              +         IQ F +G   +E   
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 260 PLDLGTTLPNLRIFSITGNQFT 281
                  +  L +     N+  
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (260), Expect = 3e-25
 Identities = 32/215 (14%), Positives = 60/215 (27%), Gaps = 20/215 (9%)

Query: 69  TCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQIL 128
           T           +    K          NL  L  ++L N      +P  +  L  LQ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 129 YLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NI 187
            +  N          ++ +               +  +  +  K+Q      NNL     
Sbjct: 521 NIACNRGIS-AAQLKADWTR--------------LADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 188 PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQ 246
            +SL  +  L  L    N       + FG    L +L L  N +   IP         ++
Sbjct: 566 SASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                   ++    +    ++  +     + N+  
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.6 bits (248), Expect = 1e-23
 Identities = 38/227 (16%), Positives = 68/227 (29%), Gaps = 28/227 (12%)

Query: 78  TILDLQNLKLVGTLSPHIG-NLSFLQKLDLRNNSFTNAIPP--QIGHLRRLQILYLQINS 134
           T L L   ++   +          ++ L   +N     IP       +  +  +    N 
Sbjct: 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNK 655

Query: 135 FDGEIP-----ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL------ 183
              E              N   V+L+ N +       F + S +  +  + N +      
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 184 -IGNIPSSLGNLSSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGTIPPSIF 240
            +     +  N   L  + L  N    S+ D      L  L N+ +  N  S + P    
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL 773

Query: 241 NISSIQTFDVGST------YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           N S ++ F +          I  + P  + T  P+L    I  N   
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITT-CPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.2 bits (234), Expect = 8e-22
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 30/229 (13%)

Query: 78  TILDLQNLKLVG---------TLSPHIGNLSFLQKLDLRNNSFTNAIPP--QIGHLRRLQ 126
             L++   + +           L+        +Q   +  N+     P    +  + +L 
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLG 576

Query: 127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIG 185
           +L    N        +      L  + L  N +   IP +      +++ L   ++N + 
Sbjct: 577 LLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGF-SHNKLK 632

Query: 186 NIPS--SLGNLSSLRGLSLSRNGFYGSIPDTFGGL-----KNLVNLSLVVNNLSGTIPPS 238
            IP+  +  ++  +  +  S N       +    +      N   ++L  N +       
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 239 IFNISSIQTFDVGS---TYIEGEMPLDLGTT---LPNLRIFSITGNQFT 281
               S I T  + +   T I                 L    +  N+ T
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.0 bits (231), Expect = 2e-21
 Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 20/220 (9%)

Query: 78  TILDLQNLKLVG-TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
            I  +    L     S  +  +  L  LD  +N          G   +L  L L  N  +
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE 608

Query: 137 GEIPAST-SNCSNLLVVSLALNHLVGKIPS--EFGSLSKLQFLSTTANNLIGNIPS---- 189
            EIP    +    +  +  + N L   IP+     S+  +  +  + N +     +    
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 190 -SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS-------GTIPPSIFN 241
                  +   ++LS N       + F     +  + L  N ++            +  N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              + T D+    +         TTLP L    ++ N F+
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.5 bits (227), Expect = 6e-21
 Identities = 27/214 (12%), Positives = 57/214 (26%), Gaps = 28/214 (13%)

Query: 78  TILDLQNLKLVG-----TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
             +D    K+       + S           + L  N               +  + L  
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 133 NSFD-------GEIPASTSNCSNLLVVSLALNHLVGKIPSE--FGSLSKLQFLSTTANNL 183
           N               +  N   L  + L  N L   +  +    +L  L  +   + N 
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMD-VSYNC 764

Query: 184 IGNIPSSLGNLSSLRGLSLSR------NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP 237
             + P+   N S L+   +        N      P       +L+ L +  N++   +  
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

Query: 238 SIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLR 271
            +     +   D+          +D+ +  P + 
Sbjct: 824 KLT--PQLYILDIADNPNIS---IDVTSVCPYIE 852

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.7 bits (225), Expect = 1e-20
 Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 21/185 (11%)

Query: 76  RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTN-------AIPPQIGHLRRLQIL 128
             + + L   ++    +      S +  + L NN  T+              +   L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 129 YLQINSFDGEIPAS--TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLS------TTA 180
            L+ N     +      +    L  + ++ N      P++  + S+L+            
Sbjct: 734 DLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL-SGTIPPSI 239
           N ++   P+ +    SL  L +  N     + +       L  L +  N   S  +    
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVC 848

Query: 240 FNISS 244
             I +
Sbjct: 849 PYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 3e-16
 Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 20/173 (11%)

Query: 75  QRVTILDLQNLKL-------VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI--GHLRRL 125
             ++ + L N  +       +     +  N   L  +DLR N  T+ +        L  L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYL 755

Query: 126 QILYLQINSFDGEIPASTSNCSNLLVVSL------ALNHLVGKIPSEFGSLSKLQFLSTT 179
             + +  N F    P    N S L    +        N ++ + P+   +   L  L   
Sbjct: 756 SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI- 813

Query: 180 ANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
            +N I  +   L     L  L ++ N        +           L+ +   
Sbjct: 814 GSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 8e-27
 Identities = 42/211 (19%), Positives = 78/211 (36%), Gaps = 14/211 (6%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             + +    L+  L   +   + L+ L L  N    A+P  I  L RL+ L ++      
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 138 EIPASTSNCS---------NLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP 188
           E+P   ++           NL  + L    +   +P+   +L  L+ L    + L   + 
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LG 222

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTF 248
            ++ +L  L  L L       + P  FGG   L  L L   +   T+P  I  ++ ++  
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 249 DVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ 279
           D+        +P  +   LP   I  +  + 
Sbjct: 283 DLRGCVNLSRLPSLIA-QLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 4e-23
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 3/148 (2%)

Query: 90  TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNL 149
             S     L  LQ L L       ++P  I +L+ L+ L ++ +     +  +  +   L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 150 LVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG 209
             + L     +   P  FG  + L+ L     + +  +P  +  L+ L  L L       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPP 237
            +P     L     + +   +L   +  
Sbjct: 292 RLPSLIAQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 2e-20
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 2/144 (1%)

Query: 62  FCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGH 121
                          +  L L+   +  +L   I NL  L+ L +RN+  + A+ P I H
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227

Query: 122 LRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN 181
           L +L+ L L+  +     P      + L  + L     +  +P +   L++L+ L     
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 182 NLIGNIPSSLGNLSSLRGLSLSRN 205
             +  +PS +  L +   + +  +
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 4e-20
 Identities = 36/215 (16%), Positives = 71/215 (33%), Gaps = 21/215 (9%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L  Q    +      +         D            +  +    QI      +   
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL-K 69

Query: 138 EIPASTSNCSNLLVVSLAL--NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
                  + +    V+L L    L  + P +   LS LQ ++  A  L+  +P ++   +
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS---------SIQ 246
            L  L+L+RN    ++P +   L  L  LS+        +P  + +           ++Q
Sbjct: 128 GLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  +  T I   +P  +   L NL+   I  +  +
Sbjct: 187 SLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 18/204 (8%)

Query: 88  VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCS 147
           +G+   H  + S  + L  + ++        +   +R                    N +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56

Query: 148 NLLVVSLALNHLVGKIPSEFGSLS--KLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRN 205
           N  + +     L           +      L   +  L    P     LS L+ +++   
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 206 GFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG- 264
           G    +PDT      L  L+L  N L   +P SI +++ ++   + +     E+P  L  
Sbjct: 115 GL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 265 -------TTLPNLRIFSITGNQFT 281
                    L NL+   +      
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR 196

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.8 bits (244), Expect = 3e-23
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 3/177 (1%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ-IGHLRRLQILYLQINSFD 136
             LDL     +  +S +   L  LQ LD ++++            L +L  L +   +  
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
            +        ++L  + +A N       S  F + + L FL  +   L          L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGS 252
            L+ L++S N         +  L +L  L    N +  +         S+  F++ +
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 4e-19
 Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 7/182 (3%)

Query: 104 LDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKI 163
               +   +  +P  I      + + L  N        S SN S L  + L+   +    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 164 PSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223
              +  L  L  L  T N +    P S   L+SL  L               G L  L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 224 LSLVVNNLSGTIPPSIF-NISSIQTFDVGS---TYIEGEMPLDLGTTLPNLRIFSITGNQ 279
           L++  N +     P+ F N++++   D+       I       L           ++ N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 280 FT 281
             
Sbjct: 193 ID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 6e-18
 Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 12/209 (5%)

Query: 76  RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF 135
            +    L               L+ +  + L   S        +    + Q L +     
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 136 DGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL--IGNIPSSLGN 193
             + P    +   L  ++L +N     I  +  +L  L +L  + N L   G    S   
Sbjct: 320 K-QFPT--LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGS 252
            +SLR L LS NG    +   F GL+ L +L    + L      S F ++  +   D+  
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 253 TYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           T  + +        L +L    + GN F 
Sbjct: 434 TNTKIDFDGIFL-GLTSLNTLKMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 6/174 (3%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
            +  +  LDL   ++          L  L  L L  N   +  P     L  L+ L    
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 133 NSFDGEIPASTSNCSNLLVVSLALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSL 191
                           L  +++A N +   K+P+ F +L+ L  +  + N +     + L
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 192 GNLSSLRG----LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
             L         L +S N         F G+  L  L+L  N  S  I  +   
Sbjct: 174 QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQ 226

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 18/214 (8%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKL--------DLRNNSFTNAIPPQIGHLRRLQILY 129
            +  L   +     +  I   S ++ L         L   +  +    +   L  +  + 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS 189
           L   S   +             +S+    L  + P     L  L+ L+ T N    +I  
Sbjct: 292 LAGVSI--KYLEDVPKHFKWQSLSIIRCQL-KQFP--TLDLPFLKSLTLTMNKG--SISF 344

Query: 190 SLGNLSSLRGLSLSRNGFYGSIPDTF--GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT 247
               L SL  L LSRN    S   ++   G  +L +L L  N     +  +   +  +Q 
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQH 403

Query: 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            D   + ++         +L  L    I+     
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 18/212 (8%)

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGH-LRRLQILYLQINSFDGE 138
           LD+    +   +         L +L LR N  ++ I       L  L +  L +  F  E
Sbjct: 186 LDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 139 IPASTSNCS--------NLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS 190
                   S         +    L   +       +F  L+ +  +S    ++       
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLED 302

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDV 250
           +      + LS+ R       P     L  L +L+L +N  S  I      + S+   D+
Sbjct: 303 VPKHFKWQSLSIIRCQL-KQFP--TLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDL 357

Query: 251 GSTYIEGEMPLDL-GTTLPNLRIFSITGNQFT 281
               +              +LR   ++ N   
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 7e-21
 Identities = 42/209 (20%), Positives = 67/209 (32%), Gaps = 6/209 (2%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
              LDL    L    S    +   LQ LDL               L  L  L L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL-IGNIPSSLGNLS 195
                + S  S+L  +     +L        G L  L+ L+   N +    +P    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNL----VNLSLVVNNLSGTIPPSIFNISSIQTFDVG 251
           +L  L LS N            L  +    ++L L +N ++  I P  F    +    + 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLR 208

Query: 252 STYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           + +    +       L  L +  +   +F
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 43/183 (23%), Positives = 70/183 (38%), Gaps = 7/183 (3%)

Query: 75  QRVTILDLQN--LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
             +  LDL    L   G  S      + L+ LDL  N     +      L +L+ L  Q 
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405

Query: 133 NSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-S 190
           ++       S   +  NL+ + ++  H        F  LS L+ L    N+   N     
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFD 249
              L +L  L LS+       P  F  L +L  L++  N L  ++P  IF  ++S+Q   
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIW 524

Query: 250 VGS 252
           + +
Sbjct: 525 LHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 5e-17
 Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 11/230 (4%)

Query: 56  WNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI 115
            + S+       V           L+L N K           L  L++L   +N   NA 
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG---QFPTLKLKSLKRLTFTSNKGGNA- 340

Query: 116 PPQIGHLRRLQILYLQIN--SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKL 173
                 L  L+ L L  N  SF G    S    ++L  + L+ N ++  + S F  L +L
Sbjct: 341 -FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 174 QFLSTTANNLIGNIPSS-LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
           + L    +NL      S   +L +L  L +S      +    F GL +L  L +  N+  
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 233 GTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
               P IF  + ++   D+    +E ++      +L +L++ ++  NQ  
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 8e-14
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 3/161 (1%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFD 136
             LDL    ++ T+S +   L  L+ LD ++++        +   LR L  L +      
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
                  +  S+L V+ +A N        + F  L  L FL  +   L    P++  +LS
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236
           SL+ L+++ N         F  L +L  + L  N    + P
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 5/173 (2%)

Query: 105 DLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIP 164
                +F   IP  +      + L L  N        S  +   L V+ L+   +     
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 165 SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL 224
             + SLS L  L  T N +      +   LSSL+ L               G LK L  L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 225 SLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT 276
           ++  N +     P  F N+++++  D+ S  I+     DL   L  + + +++
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLS 181

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
             LD Q+  L       +  +L  L  LD+ +     A       L  L++L +  NSF 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 137 GEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
                   +   NL  + L+   L    P+ F SLS LQ L+  +N L          L+
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 196 SLRGLSLSRNGFYGSIPD 213
           SL+ + L  N +  S P 
Sbjct: 519 SLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 17/181 (9%)

Query: 78  TILDLQNLKL-VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQI----LYLQI 132
             L++ +  +    L  +  NL+ L+ LDL +N   +     +  L ++ +    L L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTT------ANNLIG 185
           N  +  I         L  ++L  N     +       L+ L+             NL  
Sbjct: 187 NPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 186 NIPSSLGNLSSLRGLSLSRNG---FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNI 242
              S+L  L +L            +   I D F  L N+ + SLV   +   +    +N 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF 304

Query: 243 S 243
            
Sbjct: 305 G 305

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.4 bits (222), Expect = 2e-20
 Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 11/215 (5%)

Query: 72  PRYQRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILY 129
             +  +  L+L    +   + P    NL  L+ L LR+N     IP  +   L  L  L 
Sbjct: 53  ASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLD 110

Query: 130 LQINSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNI 187
           +  N     +      +  NL  + +  N LV  I    F  L+ L+ L T     + +I
Sbjct: 111 ISENKI-VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL-TLEKCNLTSI 167

Query: 188 PS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ 246
           P+ +L +L  L  L L           +F  L  L  L +       T+ P+     ++ 
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  +    +   +P      L  LR  +++ N  +
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 11/209 (5%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSF 135
           T LD+   K+V  L  ++  +L  L+ L++ +N     I  +    L  L+ L L+  + 
Sbjct: 107 TKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNL 164

Query: 136 DGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
              IP    S+   L+V+ L   ++       F  L +L+ L  +    +  +  +    
Sbjct: 165 T-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 195 SSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGS 252
            +L  LS++      ++P      L  L  L+L  N +S TI  S+   +  +Q   +  
Sbjct: 224 LNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVG 281

Query: 253 TYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             +   +       L  LR+ +++GNQ T
Sbjct: 282 GQLA-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 3e-17
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L L+   L    +  + +L  L  L LR+ +           L RL++L +    +  
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPS-SLGNLS 195
            +  +     NL  +S+   +L   +P      L  L+FL+ +  N I  I    L  L 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLS-YNPISTIEGSMLHELL 272

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGS 252
            L+ + L         P  F GL  L  L++  N L+ T+  S+F ++ +++T  + S
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 47/218 (21%), Positives = 77/218 (35%), Gaps = 17/218 (7%)

Query: 69  TCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQIL 128
            CS + + V        + V  +   I   +  + LDL  N        +      L+ L
Sbjct: 8   ECSAQDRAV---LCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 129 YLQINSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGN 186
            L  N     +     +N  NL  + L  N L   IP   F  LS L  L   + N I  
Sbjct: 62  ELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD-ISENKIVI 118

Query: 187 IPS-SLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPSIF-NIS 243
           +      +L +L+ L +  N     I    F GL +L  L+L   NL+ +IP     ++ 
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 244 SIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +    +    I   +       L  L++  I+   + 
Sbjct: 177 GLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYL 213

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 6/158 (3%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
            +L L++L +          L  L+ L++ +  + + + P   +   L  L +   +   
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 138 EIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLS 195
            +P     +   L  ++L+ N +     S    L +LQ +       +  +   +   L+
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV-GGQLAVVEPYAFRGLN 296

Query: 196 SLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLS 232
            LR L++S N    ++    F  + NL  L L  N L+
Sbjct: 297 YLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 15/204 (7%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L +   K+       I NL+ L  L L  N   +  P  +  L  L      +N    
Sbjct: 158 NYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
             P   +N + L  + +  N +    P    +LS+L +L    N +     +++ +L+ L
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKL 267

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
           + L++  N    S       L  L +L L  N L       I  ++++ T  +   +I  
Sbjct: 268 KMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
             PL    +L  +           
Sbjct: 326 IRPL---ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 16/205 (7%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
           +T L +   K+       I  L+ L+ L+L  N  T+  P  + +L +L  LY+  N   
Sbjct: 46  ITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI- 100

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
               ++  N +NL  + L  +++     S   +L+K+  L+  AN+ + ++ S L N++ 
Sbjct: 101 -TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDL-SPLSNMTG 156

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256
           L  L+++ +      P     L +L +LSL  N +    P  + +++S+  F      I 
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
              P+     +  L    I  N+ T
Sbjct: 213 DITPVA---NMTRLNSLKIGNNKIT 234

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 17/203 (8%)

Query: 82  LQNLKLVGTLSPHI---GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGE 138
              L  +      I    +L+   +  L+  S T+ +      L  +  L +        
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-S 58

Query: 139 IPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLR 198
           I       +NL  ++L  N +    P    +L KL  L    N +     S+L NL++LR
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113

Query: 199 GLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGE 258
            L L+ +      P     L  + +L+L  N+   +    + N++ +    V  + ++  
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 259 MPLDLGTTLPNLRIFSITGNQFT 281
            P+     L +L   S+  NQ  
Sbjct: 171 TPIA---NLTDLYSLSLNYNQIE 190

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 1e-19
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 12/211 (5%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYL 130
             + + IL L    +  T+       L+ L  L+L +N  T  IP     +L +L+ L+L
Sbjct: 86  HLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWL 143

Query: 131 QINSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIP 188
           + N  +  IP+   +   +L  + L     +  I    F  LS L++L+  A   +  IP
Sbjct: 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL-AMCNLREIP 201

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQT 247
           + L  L  L  L LS N      P +F GL +L  L ++ + +   I  + F N+ S+  
Sbjct: 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVE 259

Query: 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278
            ++    +   +P DL T L +L    +  N
Sbjct: 260 INLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.9 bits (187), Expect = 8e-16
 Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 32/208 (15%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN--------SFDG--------------- 137
            + L+L  N           HLR L+IL L  N        +F+G               
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 138 EIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPS-SLGNL 194
            IP       S L  + L  N +   IPS  F  +  L+ L       +  I   +   L
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGST 253
           S+LR L+L+       IP     L  L  L L  N+LS  I P  F  +  +Q   +  +
Sbjct: 185 SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQS 241

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            I+  +  +    L +L   ++  N  T
Sbjct: 242 QIQ-VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 9/158 (5%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDL-RNNSFTNAIPPQI-GHLRRLQILYLQINS 134
             L L+N  +  ++  +    +  L++LDL      +  I       L  L+ L L + +
Sbjct: 139 KELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCN 196

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLGN 193
              EIP   +    L  + L+ NHL   I    F  L  LQ L    + +     ++  N
Sbjct: 197 LR-EIPNL-TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231
           L SL  ++L+ N       D F  L +L  + L  N  
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 4e-19
 Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 37/219 (16%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
             +T L + +  L  +L      L   + L++  N  T+ +P     L  L I    +  
Sbjct: 61  AHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTH 115

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
                       S L  + +  N L   +P     L +L      ++N + ++P+    L
Sbjct: 116 LPALP-------SGLCKLWIFGNQL-TSLPVLPPGLQELSV----SDNQLASLPALPSEL 163

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254
             L       N    S+P    GL+ L ++S   +N   ++P     +  +  ++   T 
Sbjct: 164 CKLW---AYNNQL-TSLPMLPSGLQEL-SVS---DNQLASLPTLPSELYKLWAYNNRLTS 215

Query: 255 IEGEMP----LDLG----TTLP----NLRIFSITGNQFT 281
           +         L +     T+LP     L+   ++GN+ T
Sbjct: 216 LPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 30/204 (14%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L +   +L  +L      L   Q+L + +N   + +P     L +L     Q+ S   
Sbjct: 124 CKLWIFGNQL-TSLPVLPPGL---QELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPM 178

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
                    S L  +S++ N L   +P+    L KL       NN + ++P+    L  L
Sbjct: 179 LP-------SGLQELSVSDNQLA-SLPTLPSELYKLWAY----NNRLTSLPALPSGLKEL 226

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
               +S N    S+P        L  L +  N L+ ++P      S + +  V    +  
Sbjct: 227 ---IVSGNRL-TSLPVLPS---ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT- 274

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
            +P  L   L +    ++ GN  +
Sbjct: 275 RLPESLIH-LSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 70.7 bits (173), Expect = 6e-14
 Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 31/165 (18%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L   N +L  +L      L   Q+L + +N    ++P     L +L     ++ S   
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA 218

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSL-----------------SKLQFLSTTA 180
                    S L  + ++ N L   +P     L                 S L  LS   
Sbjct: 219 LP-------SGLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSV-Y 269

Query: 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLS 225
            N +  +P SL +LSS   ++L  N            + +    S
Sbjct: 270 RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 52/193 (26%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
              L++  +  T  +P  +     +  L +  N+                          
Sbjct: 42  NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT------------------------ 74

Query: 161 GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN 220
             +P+    L  L+     + N + ++P     L  L   S         +P        
Sbjct: 75  -SLPALPPELRTLEV----SGNQLTSLPVLPPGLLELSIFSNPLT----HLPAL---PSG 122

Query: 221 LVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP----LDLG----TTLP---- 268
           L  L +  N L+ ++P     +  +   D     +         L       T+LP    
Sbjct: 123 LCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS 181

Query: 269 NLRIFSITGNQFT 281
            L+  S++ NQ  
Sbjct: 182 GLQELSVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 9e-10
 Identities = 33/167 (19%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L   N +L  +L      L   ++L +  N  T+ +P     L+ L +   ++ S   
Sbjct: 204 YKLWAYNNRLT-SLPALPSGL---KELIVSGNRLTS-LPVLPSELKELMVSGNRLTSLPM 258

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
                    S LL +S+  N L  ++P     LS    ++   N L      +L  ++S 
Sbjct: 259 LP-------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 198 RGLS---LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
            G S   +  +    S P     L       LV        P   ++
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 3/105 (2%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L +   +L   L   + +LS    ++L  N  +      +  +         I  FD 
Sbjct: 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN 182
              ++      L     A + LV     E     +        N 
Sbjct: 323 AGASAPRETRALH--LAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.9 bits (207), Expect = 2e-18
 Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 30/211 (14%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
            + + L L  L L  +L  ++     +  L++  N+   ++P     L  L     ++++
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPASLEYLDACDNRLST 114

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
               +P   ++  +L    +  N L   +P     L  +       NN +  +P    + 
Sbjct: 115 ----LPELPASLKHL---DVDNNQLT-MLPELPALLEYINA----DNNQLTMLPELPTS- 161

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT----FDV 250
             L  LS+  N     +P+    L+ L ++S    NL  ++P         +     F  
Sbjct: 162 --LEVLSVRNNQL-TFLPELPESLEAL-DVS---TNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 251 GSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
               I   +P ++  +L       +  N  +
Sbjct: 215 RENRIT-HIPENIL-SLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 26/201 (12%), Positives = 56/201 (27%), Gaps = 21/201 (10%)

Query: 78  TILDLQNLKLVG----TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN 133
               L++L +       L      L   + ++  NN  T  +P     L  L +   Q+ 
Sbjct: 118 LPASLKHLDVDNNQLTMLPELPALL---EYINADNNQLT-MLPELPTSLEVLSVRNNQLT 173

Query: 134 SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTT---ANNLIGNIPSS 190
                         +L  + ++ N L   +P+        +          N I +IP +
Sbjct: 174 FLPELP-------ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITHIPEN 225

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDV 250
           + +L     + L  N     I ++        +       +  ++     N       D 
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG--PRIYFSMSDGQQNTLHRPLADA 283

Query: 251 GSTYIEGEMPLDLGTTLPNLR 271
            + +       D+        
Sbjct: 284 VTAWFPENKQSDVSQIWHAFE 304

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 7e-06
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 17/140 (12%)

Query: 146 CSNLLVVS--LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL--GNLSSLRGLS 201
            +N   +S     N + G     F +  K +              S L    ++    L 
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQ-ALPGENRNEAVSLLKECLINQFSELQ 65

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPL 261
           L+R     S+PD       +  L +  N L  ++P      +S++  D     +      
Sbjct: 66  LNRLNL-SSLPDNLP--PQITVLEITQNALI-SLPEL---PASLEYLDACDNRLS----- 113

Query: 262 DLGTTLPNLRIFSITGNQFT 281
            L     +L+   +  NQ T
Sbjct: 114 TLPELPASLKHLDVDNNQLT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 4e-18
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 14/208 (6%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
            R  I  + +  L   L+    +   +++LDL  N  +      +    +L++L L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
              E      + S L  + L  N++      E      ++ L   ANN I  +  S    
Sbjct: 70  LY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLH-AANNNISRVSCS--RG 119

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGST 253
              + + L+ N          G    +  L L +N +       +  +  +++  ++   
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +I     +        L+   ++ N+  
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 10/187 (5%)

Query: 95  IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154
             N +  +   + ++S   A+         ++ L L  N       A  +  + L +++L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
           + N L      +  SLS L+ L     +L  N    L    S+  L  + N     +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTL-----DLNNNYVQELLVGPSIETLHAANNNI-SRVS-- 115

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFS 274
               +   N+ L  N ++          S +Q  D+    I+     +L  +   L   +
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 275 ITGNQFT 281
           +  N   
Sbjct: 176 LQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 10/201 (4%)

Query: 82  LQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA 141
           L+ L L       +     ++ L   NN+ +  +       +  + +YL  N        
Sbjct: 82  LRTLDLNNNYVQELLVGPSIETLHAANNNISR-VSCSR--GQGKKNIYLANNKITMLRDL 138

Query: 142 STSNCSNLLVVSLALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGL 200
                S +  + L LN +          S   L+ L+    N I ++   +   + L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL-QYNFIYDVKGQV-VFAKLKTL 196

Query: 201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP 260
            LS N     +   F     +  +SL  N L   I  ++    +++ FD+          
Sbjct: 197 DLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 261 LDLGTTLPNLRIFSITGNQFT 281
            D      N R+ ++      
Sbjct: 255 RDF--FSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
             +  L   N  +   +S         + + L NN  T       G   R+Q L L++N 
Sbjct: 99  PSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 135 FDG-EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
            D        ++   L  ++L  N +   +  +    +KL+ L   ++N +  +     +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDL-SSNKLAFMGPEFQS 212

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
            + +  +SL  N     I       +NL +  L  N          F
Sbjct: 213 AAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 6/151 (3%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ-IGHLRRLQILYLQINSFD 136
             + L N K+        G  S +Q LDL+ N        +       L+ L LQ N   
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
            ++       + L  + L+ N L   +  EF S + + ++S   NN +  I  +L    +
Sbjct: 183 -DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL-RNNKLVLIEKALRFSQN 238

Query: 197 LRGLSLSRNGFY-GSIPDTFGGLKNLVNLSL 226
           L    L  NGF+ G++ D F   + +  ++ 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 7e-13
 Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 11/168 (6%)

Query: 114 AIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKL 173
           AI     +  R +I  +  +S    + +   +  N+  + L+ N L     ++    +KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 174 QFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
           + L+  ++N++      L +LS+LR L L+ N              ++  L    NN+S 
Sbjct: 61  ELLN-LSSNVLYETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +  S       +   + +  I     LD G     ++   +  N+  
Sbjct: 113 RVSCSRG--QGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 6e-18
 Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 14/208 (6%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
            R  I  + +  L   L+    +   +++LDL  N  +      +    +L++L L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
                     + S L  + L  N++      E      ++ L   ANN I  +  S    
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLH-AANNNISRVSCS--RG 119

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGST 253
              + + L+ N          G    +  L L +N +       +  +  +++  ++   
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +I     +        L+   ++ N+  
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 10/187 (5%)

Query: 95  IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154
             N +  +   + ++S   A+         ++ L L  N       A  +  + L +++L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
           + N L      +  SLS L+ L     +L  N    L    S+  L  + N     +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTL-----DLNNNYVQELLVGPSIETLHAANNNI-SRVS-- 115

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFS 274
               +   N+ L  N ++          S +Q  D+    I+     +L  +   L   +
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 275 ITGNQFT 281
           +  N   
Sbjct: 176 LQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.7 bits (194), Expect = 1e-16
 Identities = 33/205 (16%), Positives = 67/205 (32%), Gaps = 15/205 (7%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             LDL N  +       +     ++ L   NN+ +  +       +  + +YL  N    
Sbjct: 83  RTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKITM 134

Query: 138 EIPASTSNCSNLLVVSLALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
                    S +  + L LN +          S   L+ L+    N I ++   +   + 
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL-QYNFIYDVKGQV-VFAK 192

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256
           L+ L LS N     +   F     +  +SL  N L   I  ++    +++ FD+      
Sbjct: 193 LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
                D  +    ++  ++      
Sbjct: 251 CGTLRDFFSKNQRVQ--TVAKQTVK 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 8/170 (4%)

Query: 72  PRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQ 131
                +  L   N  +   +S         + + L NN  T       G   R+Q L L+
Sbjct: 96  LVGPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 132 INSFDG-EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS 190
           +N  D        ++   L  ++L  N +   +  +    +KL+ L   ++N +  +   
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDL-SSNKLAFMGPE 209

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
             + + +  +SL  N     I       +NL +  L  N          F
Sbjct: 210 FQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 7e-11
 Identities = 22/177 (12%), Positives = 50/177 (28%), Gaps = 6/177 (3%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
             VT + L+N KLV  +   +     L+  DLR N F +    +    +  ++  +   +
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQT 271

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ----FLSTTANNLIGNIPSS 190
                  +   C+   +                  L  L+     L +   +    +   
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT 247
             N +  R +   +  +   I       +  + L      L   +       + +  
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 163 IPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV 222
           I     + ++ +    T ++L   + S   +  +++ L LS N               L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 223 NLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            L+L  N L       + ++S+++T D+ + Y++     +L    P++       N  +
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELL-VGPSIETLHAANNNIS 112

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.2 bits (196), Expect = 5e-17
 Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 18/205 (8%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
           VT L    L +       +  L+ L +++  NN  T+  P  + +L +L  + +  N   
Sbjct: 48  VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
              P   +N +NL  ++L  N +         +L+ L  L  ++N +     S+L  L+S
Sbjct: 104 DITP--LANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTS 157

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256
           L+ LS        +       L  L  L +  N +S      +  ++++++    +  I 
Sbjct: 158 LQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS 212

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
              PL     L NL   S+ GNQ  
Sbjct: 213 DITPLG---ILTNLDELSLNGNQLK 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 17/204 (8%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L   N ++  +    +G L+ L +L L  N   +     +  L  L  L L  N    
Sbjct: 202 ESLIATNNQI--SDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
             P   S  + L  + L  N +     S    L+ L  L    N L    P  + NL +L
Sbjct: 258 LAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNL 311

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
             L+L  N      P     L  L  L    N +S     S+ N+++I     G   I  
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
             PL     L  +    +    +T
Sbjct: 368 LTPL---ANLTRITQLGLNDQAWT 388

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 16/187 (8%)

Query: 95  IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154
              L+   K  L   + T+ +      L ++  L         +        +NL  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINF 75

Query: 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
           + N L    P    +L+KL  +    N +     + L NL++L GL+L  N    +  D 
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDP 129

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFS 274
              L NL  L L  N +S     ++  ++S+Q        +    PL     L  L    
Sbjct: 130 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKPLA---NLTTLERLD 183

Query: 275 ITGNQFT 281
           I+ N+ +
Sbjct: 184 ISSNKVS 190

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 15/197 (7%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L L   +L       + +L+ L  LDL NN  +N  P  +  L +L  L L  N    
Sbjct: 224 DELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
             P   +  + L  + L  N L     S   +L  L +L+   NN+    P  + +L+ L
Sbjct: 280 ISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
           + L    N    S   +   L N+  LS   N +S   P  + N++ I    +       
Sbjct: 334 QRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 258 EMPLDLGTTLPNLRIFS 274
             P++    +       
Sbjct: 390 A-PVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 14/180 (7%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
           T L L   ++  +    +  L+ L  L+L  N   +  P  I +L+ L  L L  N+   
Sbjct: 268 TELKLGANQI--SNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
             P   S+ + L  +    N +     S   +L+ + +LS   N +    P  L NL+ +
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRI 377

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPS-IFNISSIQTFDVGSTYIE 256
             L L+   +  +  +      N+   + V N     I P+ I +  S    D+      
Sbjct: 378 TQLGLNDQAWTNAPVNYK---ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 39/186 (20%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN--SFDGEIPASTSNCSNLLVVSLALNH 158
             +L+L +N   +        L +L  L L  N  SF G    S    ++L  + L+ N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 159 LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS--LGNLSSLRGLSLSRNGFYGSIPDTFG 216
           ++  + S F  L +L+ L    ++ +  +       +L +L  L +S      +    F 
Sbjct: 90  VI-TMSSNFLGLEQLEHL-DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 217 GLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSI 275
           GL +L  L +  N+      P IF  + ++   D+    +E ++      +L +L++ ++
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNM 206

Query: 276 TGNQFT 281
           + N F 
Sbjct: 207 SHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 9/161 (5%)

Query: 78  TILDLQNLKLVGTLSPH--IGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINS 134
             LD Q+  L   +S      +L  L  LD+ +          I   L  L++L +  NS
Sbjct: 104 EHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNS 161

Query: 135 FDGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLG 192
           F         +   NL  + L+   L  ++    F SLS LQ L+ + NN          
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 193 NLSSLRGLSLSRNGFYGSIPDTFGGL-KNLVNLSLVVNNLS 232
            L+SL+ L  S N    S          +L  L+L  N+ +
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.8 bits (189), Expect = 5e-16
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 13/197 (6%)

Query: 97  NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLA 155
            L+  ++L L  N            L +LQ+L L        I      N  NL ++ L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 156 LNHLVGKIPSEFGSLSKLQFLSTTANNLIGNI--PSSLGNLSSLRGLSLSRNGFYG-SIP 212
            + +    P  F  L  L  L      L   +       NL +L  L LS+N      + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 213 DTFGGLKNLVNLSLVVNNLSGTIPPSIFN---ISSIQTFDVGSTYIEGEMPLDLGTTL-- 267
            +FG L +L ++    N +   +           ++  F + +  +   + +D G  +  
Sbjct: 142 PSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 268 ---PNLRIFSITGNQFT 281
                L I  ++GN +T
Sbjct: 201 FRNMVLEILDVSGNGWT 217

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 50/230 (21%), Positives = 81/230 (35%), Gaps = 23/230 (10%)

Query: 74  YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN 133
            + + +L+L   K+          L  LQ L+L  N            L ++  + LQ N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 134 SFDGEIPASTSNCSNLLVVSLALN-----HLVGKIPSEFGSLSKLQFLSTTA-------- 180
                   +      L  + L  N     H +  IP  F S +KL  L            
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408

Query: 181 -NNLIGNIP--SSLGNLSSLRGLSLSRNGF-YGSIPDTFGGLKNLVNLSLVVNNLSG--- 233
             N + N+     L  +  L+ L L++N F   S   T     +L  L L  N L     
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 234 -TIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             +   +F  +S +Q   +   Y+   +P  + + L  LR  S+  N+ T
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 6e-13
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 21/215 (9%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
            +V  +DLQ   +          L  LQ LDLR+N+ T      I  +  +  ++L  N 
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNK 392

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS--LG 192
               +P      + + +    L +L   I      +  LQ L     N   +        
Sbjct: 393 L-VTLPKINLTANLIHLSENRLENL--DILYFLLRVPHLQILIL-NQNRFSSCSGDQTPS 448

Query: 193 NLSSLRGLSLSRNGFYGSI-----PDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQ 246
              SL  L L  N    +       D F GL +L  L L  N L+ ++PP +F ++++++
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALR 507

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              + S  +     L       NL I  I+ NQ  
Sbjct: 508 GLSLNSNRLTV---LSHNDLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.5 bits (165), Expect = 8e-13
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 79  ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRR--LQILYLQINSFD 136
           I    +  +  + +  +     +       ++  +        L R  ++ L L      
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
                      +L V++LA N +       F  L  LQ L+ + N L     S+   L  
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG-TIPPSIF-------NISSIQTF 248
           +  + L +N        TF  L+ L  L L  N L+     PSI         + ++   
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399

Query: 249 DVGSTY-------IEGEMPLDLGTTLPNLRIFSITGNQFT 281
           ++ +         +E    L     +P+L+I  +  N+F+
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 5e-12
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 7/159 (4%)

Query: 126 QILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG 185
           +I + +  +   ++P      +    + L+ N++     S F  L +LQ L   +     
Sbjct: 7   RIAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 186 NI-PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS-GTIPPSIF-NI 242
            I   +  NL +LR L L  +  Y   PD F GL +L  L L    LS   +    F N+
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 243 SSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            ++   D+    I           L +L+    + NQ  
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 7e-12
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 17/206 (8%)

Query: 82  LQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA 141
           LQ L L       I  +  +  + L  N     +P        + +   ++ + D  I  
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLD--ILY 420

Query: 142 STSNCSNLLVVSLALNHLVGKIPSE--FGSLSKLQFLSTTANNLIGNIPSSL-----GNL 194
                 +L ++ L  N        +        L+ L    N L     + L       L
Sbjct: 421 FLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254
           S L+ L L+ N      P  F  L  L  LSL  N L+  +  +    ++++  D+    
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLP-ANLEILDISRNQ 537

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQF 280
           +    P        +L +  IT N+F
Sbjct: 538 LLAPNP----DVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 7e-11
 Identities = 38/213 (17%), Positives = 69/213 (32%), Gaps = 23/213 (10%)

Query: 78  TILDLQNLKLVGTLSPHIGNLS------FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQ 131
           +   L    L   +S   G          L+ LD+  N +T            + I    
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT------------VDITGNF 224

Query: 132 INSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSL--SKLQFLSTTANNLIGNIPS 189
            N+       S     +++      +++     + F  L  S ++ L  +   +      
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284

Query: 190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTF 248
               L  L+ L+L+ N       + F GL NL  L+L  N L   +  S F  +  +   
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYI 343

Query: 249 DVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           D+   +I   +       L  L+   +  N  T
Sbjct: 344 DLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234
           F    A     N+      L++   L LS N        +F  L+ L  L L       T
Sbjct: 4   FDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 235 IPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           I    F N+ +++  D+GS+ I   +  D    L +L    +     +
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLS 110

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.0 bits (184), Expect = 2e-15
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 82  LQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA 141
           L +  +   L   +     +++LD  +NS    +   +     L IL LQ N+   +   
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW 249

Query: 142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLS 201
              N   L+ V L+ N L   +   F  + +L+ L   +NN +  +      + +L+ L 
Sbjct: 250 -LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY-ISNNRLVALNLYGQPIPTLKVLD 307

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
           LS N     +         L NL L  N++  T+  S  
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTH 344

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 9e-15
 Identities = 29/204 (14%), Positives = 66/204 (32%), Gaps = 19/204 (9%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L L + +L       +  +  L   ++  N  +      +     ++ L    NS + 
Sbjct: 174 QNLQLSSNRLT---HVDLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN- 224

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
            +         L ++ L  N+L     +   +   L  +  + N L   +      +  L
Sbjct: 225 VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
             L +S N    ++      +  L  L L  N+L   +  +      ++   +    I  
Sbjct: 281 ERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV- 337

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
            + L    T   L+  +++ N + 
Sbjct: 338 TLKLS---THHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFDGE 138
           + +               L+  + +  +N++    +P  +    R++++L L     + E
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE-E 89

Query: 139 IPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSS 196
           I     +    +  + +  N +    P  F ++  L  L     N + ++P  +  N   
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV-LERNDLSSLPRGIFHNTPK 148

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256
           L  LS+S N       DTF    +L NL L  N L+  +  S+    S+   +V    + 
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS 205

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
                        +     + N   
Sbjct: 206 ------TLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 9/167 (5%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
             +TIL LQ+  L  T +  + N   L ++DL  N     +      ++RL+ LY+  N 
Sbjct: 232 VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
               +         L V+ L+ NHL+  +        +L+ L    +N I  +   L   
Sbjct: 290 L-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD-HNSIVTLK--LSTH 344

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
            +L+ L+LS N +           +N+   ++   +    I   + +
Sbjct: 345 HTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.3 bits (151), Expect = 3e-11
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 10/188 (5%)

Query: 97  NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLA 155
                  + +   +       +   L   +I+  + ++   ++PA+   +   + +++L 
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 83

Query: 156 LNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS-LGNLSSLRGLSLSRNGFYGSIPDT 214
              +       F     +Q L     N I  +P     N+  L  L L RN         
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLY-MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIF 273
           F     L  LS+  NNL   I    F   +S+Q   + S  +     +DL   +P+L   
Sbjct: 143 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLS-LIPSLFHA 197

Query: 274 SITGNQFT 281
           +++ N  +
Sbjct: 198 NVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 19/138 (13%), Positives = 43/138 (31%), Gaps = 9/138 (6%)

Query: 151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL------GNLSSLRGLSLSR 204
           V      ++  + P      S LQ+     +  I      +        L++ + ++   
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDL 263
           +             + +  L+L    +   I    F    +IQ   +G   I   +P  +
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV 118

Query: 264 GTTLPNLRIFSITGNQFT 281
              +P L +  +  N  +
Sbjct: 119 FQNVPLLTVLVLERNDLS 136

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 8/160 (5%)

Query: 82  LQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA 141
           L +  +   L   +     +++LD  +NS    +   +     L IL LQ N+   +   
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLT-DTAW 243

Query: 142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLS 201
              N   L+ V L+ N L   +   F  + +L+ L   +NN +  +      + +L+ L 
Sbjct: 244 -LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY-ISNNRLVALNLYGQPIPTLKVLD 301

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
           LS N     +         L NL L  N++  T+  S  +
Sbjct: 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHH 339

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFDGE 138
           + +               L+  + +  +N++    +P  +    R++++L L     + E
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIE-E 83

Query: 139 IPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSS 196
           I     +    +  + +  N +    P  F ++  L  L     N + ++P  +  N   
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV-LERNDLSSLPRGIFHNTPK 142

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256
           L  LS+S N       DTF    +L NL L  N L+  +  S+    S+   +V    + 
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS 199

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
                        +     + N   
Sbjct: 200 ------TLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 41/208 (19%), Positives = 77/208 (37%), Gaps = 20/208 (9%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFD 136
            I+  +N  +    +  + +   ++ L+L +      I      +   +Q LY+  N+  
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR 106

Query: 137 GEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSS-LGN 193
             +P     N   L V+ L  N L   +P   F +  KL  LS  +NN +  I       
Sbjct: 107 -YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS-MSNNNLERIEDDTFQA 163

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253
            +SL+ L LS N     +      + +L + ++  N LS     ++    +++  D    
Sbjct: 164 TTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHN 215

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            I   +   +      L I  +  N  T
Sbjct: 216 SIN-VVRGPV---NVELTILKLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 39/226 (17%), Positives = 69/226 (30%), Gaps = 30/226 (13%)

Query: 75  QRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQI 132
             +T+L L+   L  +L   I  N   L  L + NN+    I          LQ L L  
Sbjct: 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSS 174

Query: 133 NSFDGEIPAST-----------------SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQF 175
           N     +  S                  +    +  +  + N +   +        +L  
Sbjct: 175 NRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG--PVNVELTI 230

Query: 176 LSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235
           L    NNL     + L N   L  + LS N     +   F  ++ L  L +  N L   +
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 287

Query: 236 PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                 I +++  D+   ++   +  +       L    +  N   
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 35/189 (18%), Positives = 70/189 (37%), Gaps = 12/189 (6%)

Query: 97  NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLA 155
                  + +   +       +   L   +I+  + ++   ++PA+   +   + +++L 
Sbjct: 19  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77

Query: 156 LNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSS-LGNLSSLRGLSLSRNGFYGSIPD 213
              +  +I +  F     +Q L     N I  +P     N+  L  L L RN        
Sbjct: 78  DLQIE-EIDTYAFAYAHTIQKLY-MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRI 272
            F     L  LS+  NNL   I    F   +S+Q   + S  +     +DL   +P+L  
Sbjct: 136 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLS-LIPSLFH 190

Query: 273 FSITGNQFT 281
            +++ N  +
Sbjct: 191 ANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 9/158 (5%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
             +TIL LQ+  L  T +  + N   L ++DL  N     +      ++RL+ LY+  N 
Sbjct: 226 VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
               +         L V+ L+ NHL+  +        +L+ L    +N I  +   L   
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY-LDHNSIVTLK--LSTH 338

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
            +L+ L+LS N +           +N+   ++   +  
Sbjct: 339 HTLKNLTLSHNDW--DCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 28/176 (15%), Positives = 66/176 (37%), Gaps = 5/176 (2%)

Query: 108 NNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEF 167
                  I   + +      +++ + + D          +N  +V+   + +     +  
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 168 GSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSL 226
            S  +++ L+   +  I  I + +     +++ L +  N      P  F  +  L  L L
Sbjct: 66  DSFRQVELLN-LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 227 VVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             N+LS ++P  IF N   + T  + +  +E  +  D      +L+   ++ N+ T
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 5/179 (2%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQ 131
               + +L L++ ++  T+      +L  L+ LDL +N  ++      G L  L+ L L 
Sbjct: 48  ACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106

Query: 132 INSFDG-EIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPS 189
            N +    + +   N +NL  + +       +I    F  L+ L  L   A +L      
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTF 248
           SL ++  +  L+L  +     +      L ++  L L   NL+     S   +  + + 
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSP 224

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 34/191 (17%), Positives = 76/191 (39%), Gaps = 16/191 (8%)

Query: 97  NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLA 155
               +++L +        +      L +++ + ++ +     +P S   +  +L  + L+
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342

Query: 156 LNHLVGKI---PSEFGSLSKLQFLSTTANNL--IGNIPSSLGNLSSLRGLSLSRNGFYGS 210
            N +V +     +  G+   LQ L  + N+L  +      L  L +L  L +SRN F   
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HP 401

Query: 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL 270
           +PD+    + +  L+L    +   +   I    +++  DV +  ++          LP L
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-----SFSLFLPRL 453

Query: 271 RIFSITGNQFT 281
           +   I+ N+  
Sbjct: 454 QELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 7/190 (3%)

Query: 96  GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSL 154
           G  + ++ LDL  N  T      +     LQ+L L+ +     I      +  +L  + L
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDL 81

Query: 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIP- 212
           + NHL     S FG LS L++L+   N      + S   NL++L+ L +     +  I  
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 213 DTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLR 271
             F GL +L  L +   +L          +I  I    +  +     +       L ++R
Sbjct: 142 IDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 272 IFSITGNQFT 281
              +      
Sbjct: 200 YLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 26/226 (11%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---QIN 133
           +  L +    L   LS     L  ++++ + N+           HL+ L+ L L    + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 134 SFDGEIPASTSNCSNLLVVSLALNHL--VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL 191
               +  A      +L  + L+ NHL  + K      +L  L  L   + N    +P S 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI-SRNTFHPMPDSC 406

Query: 192 GNLSSLRGLSLSRNGF-----------------YGSIPDTFGGLKNLVNLSLVVNNLSGT 234
                +R L+LS  G                    ++      L  L  L +  N L  T
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-T 465

Query: 235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF 280
           +P +      +    +    ++  +P  +   L +L+   +  N +
Sbjct: 466 LPDASL-FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 21/224 (9%)

Query: 78  TILDLQNLKLVG-TLSPHIGNLSFLQKLDLRNNSFTNAIPPQ-IGHLRRLQILYLQINSF 135
             L+L         ++    NL+ LQ L + N    + I       L  L  L ++  S 
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 136 DGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
                 S  +  ++  ++L L+     +      LS +++L     NL     S L    
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS---------GTIPPSIFNI---- 242
               +            ++F  L  L+   L ++ +          G   PS  ++    
Sbjct: 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

Query: 243 -----SSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                 +I+   +   Y+  ++   + + L  ++  ++  ++  
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 22/229 (9%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS--------FTNAIPPQIGHLRRLQ 126
           + +  L L   +    L      LS ++ L+LR+ +                       +
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 127 ILYLQINSFDG--EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA---- 180
              L   SF+   ++       S +      LN L    PSE   +S+L  + T      
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 181 ----NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236
                 L  ++ +    L  ++ +++  +  +         LK+L  L L  N +     
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 237 PS---IFNISSIQTFDVGSTYIEG-EMPLDLGTTLPNLRIFSITGNQFT 281
            +        S+QT  +   ++   +   ++  TL NL    I+ N F 
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 18/162 (11%)

Query: 75  QRVTILDLQN--LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL-- 130
             +  L L    L+ +      +  L  L  LD+  N+F   +P       +++ L L  
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSS 419

Query: 131 -QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS 189
             I      IP        L V+ ++ N+L          L +L ++S    N +  +P 
Sbjct: 420 TGIRVVKTCIP------QTLEVLDVSNNNL-DSFSLFLPRLQEL-YIS---RNKLKTLPD 468

Query: 190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231
           +      L  + +SRN         F  L +L  + L  N  
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 11/185 (5%)

Query: 97  NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL 156
                    L  +S  N    Q+  L  + +  + +    G          N+  +++  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINN 75

Query: 157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFG 216
            H      +    LS L+ L     ++  +   +L  L+SL  L +S +    SI     
Sbjct: 76  IHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 217 GLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT 276
            L  + ++ L  N     I P +  +  +++ ++    +     ++     P L      
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYAF 189

Query: 277 GNQFT 281
                
Sbjct: 190 SQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.8 bits (174), Expect = 5e-15
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 7/157 (4%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
           +T + L N+  V  L+  I     ++ L + N   TN  P  I  L  L+ L +      
Sbjct: 46  LTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
            +   + S  ++L ++ ++ +     I ++  +L K+  +  + N  I +I   L  L  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPE 160

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
           L+ L++  +G +            L  L      + G
Sbjct: 161 LKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 42/208 (20%), Positives = 73/208 (35%), Gaps = 32/208 (15%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN--------SFDG--------------- 137
            + L+L  N+          HL  L++L L  N        +F+G               
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 138 EIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPS-SLGNL 194
            IP+      S L  + L  N +   IPS  F  +  L  L       +  I   +   L
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGST 253
            +L+ L+L        +P     L  L  L +  N+    I P  F  +SS++   V ++
Sbjct: 196 FNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS 252

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +   +  +    L +L   ++  N  +
Sbjct: 253 QVS-LIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.6 bits (181), Expect = 4e-15
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 8/147 (5%)

Query: 97  NLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSL 154
            LS L++L LRNN   + IP      +  L  L L        I         NL  ++L
Sbjct: 145 YLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPD 213
            + ++   +P+    L  L+ L   + N    I   S   LSSL+ L +  +       +
Sbjct: 204 GMCNIK-DMPN-LTPLVGLEELEM-SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPSIF 240
            F GL +LV L+L  NNLS ++P  +F
Sbjct: 261 AFDGLASLVELNLAHNNLS-SLPHDLF 286

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L+L    +     P++  L  L++L++  N F    P     L  L+ L++  +    
Sbjct: 199 KYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS- 255

Query: 138 EIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL 183
            I  +     ++L+ ++LA N+L       F  L  L  L    N  
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 28/210 (13%)

Query: 77  VTILDLQNLKLVGTLS--PHIGNLSF--LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI 132
           + IL+L+N+      +    +       L+ L +      N    Q+     L  L L  
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG 192
           N   GE    ++ C                 P +F +L  L   +       G   +   
Sbjct: 183 NPELGERGLISALC-----------------PLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 193 NLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVG 251
               L+GL LS N    +    +      L +L+L    L   +P  +   + +   D+ 
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLS 282

Query: 252 STYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              ++          LP +   S+ GN F 
Sbjct: 283 YNRLDR---NPSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 34/220 (15%), Positives = 60/220 (27%), Gaps = 20/220 (9%)

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHL---RRLQILYLQINSFD 136
           L   + +        I     L++L +R     + I      +     LQ L L+     
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTT-------ANNLIGNIP- 188
           G  P      +   +  L L ++     +    L++LQ            A     N   
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNV--SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 189 SSLGNLSSLRGLSLSRNGFYGSI-------PDTFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
             +    +L  L LS N   G         P  F  L+ L   +  +   SG        
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              +Q  D+    +              L   +++     
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 13/167 (7%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI-------PPQIGHLRRLQI 127
             + +L +     +      +     L  LDL +N             P +   L+ L +
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 128 LYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGN 186
               + +  G   A  +    L  + L+ N L     +      S+L  L+  +   +  
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN-LSFTGLKQ 267

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
           +P  L   + L  L LS N      P     L  + NLSL  N    
Sbjct: 268 VPKGL--PAKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 14/195 (7%)

Query: 100 FLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHL 159
            L+++D   +        +   L+RL +   +I S            S L  ++L    +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 160 VGKIPSEFGSLSKLQFLS-TTANNLIGNIPSSLGNLS-----SLRGLSLSRNGFYGSIPD 213
            G  P      +          N       + L  L       L+ LS+++        +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPSI----FNISSIQTFDV---GSTYIEGEMPLDLGTT 266
                  L  L L  N   G              ++Q   +   G     G         
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-AA 226

Query: 267 LPNLRIFSITGNQFT 281
              L+   ++ N   
Sbjct: 227 RVQLQGLDLSHNSLR 241

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 3e-14
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 10/186 (5%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHL 159
            Q++ L  N  ++         R L IL+L  N     I A+  +  + L  + L+ N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 160 VGKIPSE-FGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPD-TFG 216
           +  +    F  L +L  L       +  +       L++L+ L L  N    ++PD TF 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFR 150

Query: 217 GLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSI 275
            L NL +L L  N +S ++P   F  + S+    +    +   +       L  L    +
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 276 TGNQFT 281
             N  +
Sbjct: 209 FANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 9/159 (5%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSF 135
             LDL +   + ++ P     L  L  L L        + P +   L  LQ LYLQ N+ 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNAL 141

Query: 136 DGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGN 193
              +P  T  +  NL  + L  N +       F  L  L  L     N + ++   +  +
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHAFRD 199

Query: 194 LSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNL 231
           L  L  L L  N    ++P +    L+ L  L L  N  
Sbjct: 200 LGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 4/96 (4%)

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSI 245
           +P  +   ++ + + L  N        +F   +NL  L L  N L+  I  + F  ++ +
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 246 QTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  D+        +       L  L    +      
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 34/215 (15%), Positives = 60/215 (27%), Gaps = 34/215 (15%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             +   N  L     P + NL FL  +   NN     +P     L  L +    +     
Sbjct: 218 ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTD--- 271

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
            +P    + + L V     + L         +L  L       +N I ++     +L   
Sbjct: 272 -LPELPQSLTFLDVSENIFSGL----SELPPNLYYLNAS----SNEIRSLCDLPPSLEE- 321

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
             L++S N     +P     L+ L   S    N    +P    N+  +            
Sbjct: 322 --LNVSNNKLI-ELPALPPRLERL-IAS---FNHLAEVPELPQNLKQLHVEYNPLREFPD 374

Query: 258 EMP-----------LDLGTTLPNLRIFSITGNQFT 281
                          ++     NL+   +  N   
Sbjct: 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 39/218 (17%)

Query: 91  LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLL 150
           ++P   + +FLQ+    +++ T  +P +  +++     Y   + ++   P        + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 151 VVSLALNHLVG------------KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLR 198
           V  L                    +P     L  L      + N +  +P    +L SL 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESL----VASCNSLTELPELPQSLKSLL 117

Query: 199 GLSLSRNGFYGSIP---------------DTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS 243
             + +        P                       L  + +  N+L   +P       
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDL---PP 173

Query: 244 SIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           S++    G+  +E E+P +L   LP L       N   
Sbjct: 174 SLEFIAAGNNQLE-ELP-ELQ-NLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 9e-13
 Identities = 38/235 (16%), Positives = 70/235 (29%), Gaps = 46/235 (19%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSF-------------LQKLDLRNNSFTNAIPPQIGH 121
           +  T       +      P  G                   +L+L N   ++ +P    H
Sbjct: 34  KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPPH 92

Query: 122 LRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPS---------------E 166
           L  L      +      +P    +  +LLV +  L  L    P                E
Sbjct: 93  LESLVASCNSLTE----LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148

Query: 167 FGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSL 226
             + S L+ +    NN +  +P    +L     ++   N     +P+    L  L  +  
Sbjct: 149 LQNSSFLKIIDVD-NNSLKKLPDLPPSLEF---IAAGNNQL-EELPE-LQNLPFLTAIYA 202

Query: 227 VVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             N+L   +P    +   +++   G+  +  E   +L   LP L       N   
Sbjct: 203 DNNSLK-KLPDLPLS---LESIVAGNNIL--EELPELQ-NLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 21/155 (13%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
             L++ N KL+  L      L   ++L    N     +P    +L++L + Y  +  F  
Sbjct: 320 EELNVSNNKLI-ELPALPPRL---ERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPD 374

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
              +         V  L +N  + ++P    +L +L        N +   P    ++  L
Sbjct: 375 IPES---------VEDLRMNSHLAEVPELPQNLKQL----HVETNPLREFPDIPESVEDL 421

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
           R   ++                 L +     ++  
Sbjct: 422 R---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.0 bits (172), Expect = 4e-14
 Identities = 48/214 (22%), Positives = 84/214 (39%), Gaps = 16/214 (7%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQ 131
             + +  L L N K+   +SP     L  L++L L  N     +P      + LQ L + 
Sbjct: 74  NLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVH 129

Query: 132 INSFDGEIPAST-SNCSNLLVVSLALNHL-VGKIPSE-FGSLSKLQFLSTTANNLIGNIP 188
            N    ++  S  +  + ++VV L  N L    I +  F  + KL ++   A+  I  IP
Sbjct: 130 ENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI-ADTNITTIP 187

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQT 247
             L    SL  L L  N        +  GL NL  L L  N++S  +      N   ++ 
Sbjct: 188 QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRE 244

Query: 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
             + +  +  ++P  L      +++  +  N  +
Sbjct: 245 LHLNNNKLV-KVPGGL-ADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 15/186 (8%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHL 159
              LDL+NN  T        +L+ L  L L  N    +I     +    L  + L+ N L
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQL 112

Query: 160 VGKIPSE-FGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSI--PDTF 215
             ++P +   +L +L+       N I  +       L+ +  + L  N    S      F
Sbjct: 113 K-ELPEKMPKTLQELRV----HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 216 GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSI 275
            G+K L  + +   N++ TIP  +    S+    +    I  ++       L NL    +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGL 223

Query: 276 TGNQFT 281
           + N  +
Sbjct: 224 SFNSIS 229

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 17/174 (9%)

Query: 78  TILDLQNLKL-VGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF 135
            +++L    L    +       +  L  + + + + T  IP   G    L  L+L  N  
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTELHLDGNKI 204

Query: 136 DGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
             ++ A++    +NL  + L+ N +         +   L+ L    N L+  +P  L + 
Sbjct: 205 T-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 262

Query: 195 SSLRGLSLSRNGFYGSIPDT-------FGGLKNLVNLSLVVNNLSGT-IPPSIF 240
             ++ + L  N    +I               +   +SL  N +    I PS F
Sbjct: 263 KYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFD 136
           T L L   K+    +  +  L+ L KL L  NS +  +      +   L+ L+L  N   
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV 253

Query: 137 GEIPASTSNCSNLLVVSLALNHL------VGKIPSEFGSLSKLQFLSTTANNL-IGNIPS 189
            ++P   ++   + VV L  N++          P      +    +S  +N +    I  
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 190 SL-GNLSSLRGLSLSRN 205
           S    +     + L   
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 19/212 (8%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSF 135
             LDL    L   L  +   +   LQ LDL        I       L  L  L L  N  
Sbjct: 31  KNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 136 DGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSS--L 191
              +     S  S+L  +     +L   + +   G L  L+ L+  A+NLI +       
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN-VAHNLIQSFKLPEYF 145

Query: 192 GNLSSLRGLSLSRNGFYGSIP-DTFGGLKNL----VNLSLVVNNLSGTIPPSIFNISSIQ 246
            NL++L  L LS N    SI       L  +    ++L L +N ++  I P  F    ++
Sbjct: 146 SNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278
              + +  ++  +P  +   L +L+   +  N
Sbjct: 204 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 31/142 (21%), Positives = 43/142 (30%), Gaps = 28/142 (19%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
            + LDL  N   +           LQ+L L        I                     
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA----------------- 71

Query: 161 GKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSSLRGLSLSRNGFYGSIPD-TFGGL 218
                 + SLS L  L  T  N I ++       LSSL+ L         S+ +   G L
Sbjct: 72  ------YQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHL 123

Query: 219 KNLVNLSLVVNNLSGTIPPSIF 240
           K L  L++  N +     P  F
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYF 145

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 39/207 (18%), Positives = 62/207 (29%), Gaps = 13/207 (6%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSF 135
              L L    L    S    NL  + ++ +  +     +      +L ++  + ++    
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 136 DGEIPAST-SNCSNLLVVSLALNHLVGKIPSE--FGSLSKLQFLSTTANNLIGNIPS-SL 191
              I          L  + +    L    P      S      L  T N  + +IP  + 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 192 GNLSS-LRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPSIFN--ISSIQT 247
             L +    L L  NGF  S+    F G K L  + L  N     I    F    S    
Sbjct: 152 QGLCNETLTLKLYNNGF-TSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 248 FDVGSTYIEGEMPLDLGTTLPNLRIFS 274
            DV  T +   +P      L  L   +
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 9/174 (5%)

Query: 74  YQRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQ 131
              ++ + +     +  L  H   NLS +  +++RN      I P     L  L+ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 132 INSFDGEIPAST--SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIP 188
                   P  T   +     ++ +  N  +  IP   F  L          NN   ++ 
Sbjct: 114 NTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKN-LVNLSLVVNNLSGTIPPSIF 240
               N + L  + L++N +   I  D FGG+ +    L +   +++  +P    
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRN 205
            +   + L   HL       F +L  +  +  + +  +  + S S  NLS +  + +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 206 GFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
                I  D    L  L  L +    L    P    
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK 125

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 5e-13
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 17/218 (7%)

Query: 77  VTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINS 134
           V  LDL N ++   +S         LQ L L +N     I       L  L+ L L  N 
Sbjct: 54  VKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 135 FDGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPS-SL 191
               + +S     S+L  ++L  N       +  F  L+KLQ L     +    I     
Sbjct: 112 L-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDV 250
             L+ L  L +  +      P +   ++N+ +L L +      +        SS++  ++
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLEL 229

Query: 251 GSTYIEG-------EMPLDLGTTLPNLRIFSITGNQFT 281
             T ++            +        R   IT     
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 17/185 (9%)

Query: 78  TILDLQNLKLVGTLSPHI--GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINS 134
           T L+L       TL       +L+ LQ L + N      I  +    L  L+ L +  + 
Sbjct: 127 TFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 135 FDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN------- 186
                   +  +  N+  + L +   +  +       S ++ L     +L          
Sbjct: 186 LQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 187 -IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISS 244
              +SL    + R + ++    +  +      +  L+ L    N L  ++P  IF  ++S
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS 302

Query: 245 IQTFD 249
           +Q   
Sbjct: 303 LQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 16/215 (7%)

Query: 76  RVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI--GHLRRLQILYLQI 132
            +  LDL    L   LS      LS L  L+L  N +   +       HL +LQIL +  
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGN 158

Query: 133 NSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL 191
                +I     +  + L  + +  + L    P    S+  +  L       I  +   +
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 192 GNLSSLRGLSLSRNGFYG----SIP----DTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS 243
              SS+  L L            +     ++        N+ +   +L   +   +  IS
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQIS 277

Query: 244 SIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN 278
            +   +     ++  +P  +   L +L+   +  N
Sbjct: 278 GLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 12/162 (7%)

Query: 80  LDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN----- 133
           L + N+     +       L+FL++L++  +   +  P  +  ++ +  L L +      
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 134 ---SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS 190
                D           +  + +   + L     +        + +  T  +L   +   
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 191 LGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNL 231
           L  +S L  L  SRN    S+PD  F  L +L  + L  N  
Sbjct: 273 LNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 11/210 (5%)

Query: 77  VTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINS 134
              L     KL   +          L+K+++  N     I   +  +L +L  + ++  +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 135 FDGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPS-SL 191
               I      N  NL  + ++   +   +P        +   L    N  I  I   S 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 192 GNLSS-LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFD 249
             LS     L L++NG        F G +         NNL   +P  +F   S     D
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD 208

Query: 250 VGSTYIEGEMPLDLGTTLPNLRIFSITGNQ 279
           +  T I   +P      L  LR  S    +
Sbjct: 209 ISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 3/102 (2%)

Query: 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
            + +  IPS L    +   L              F G  +L  + +  N++   I   +F
Sbjct: 18  ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 241 -NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            N+  +    +        +  +    LPNL+   I+     
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 1e-12
 Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 23/213 (10%)

Query: 72  PRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL- 130
             +      +L+  K V         L+ + ++   N+   + +   I +L  +  L+L 
Sbjct: 18  DAFAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLN 73

Query: 131 --QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP 188
             ++           +N  NL  + L  N +   + S    L KL+ LS   N  I +I 
Sbjct: 74  GNKLTDIKP-----LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNG-ISDI- 124

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTF 248
           + L +L  L  L L  N    +       L  L  LSL  N +S  I P +  ++ +Q  
Sbjct: 125 NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNL 180

Query: 249 DVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +   +I     L     L NL +  +   +  
Sbjct: 181 YLSKNHISDLRAL---AGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 8e-10
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 22/205 (10%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---QIN 133
           +  +   N  +  ++   I  L  + KL L  N  T+ I P + +L+ L  L+L   +I 
Sbjct: 45  IDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK 100

Query: 134 SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
                      +   L  +SL  N +   I      L +L+ L    NN I +I + L  
Sbjct: 101 DLSSL-----KDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYL-GNNKITDI-TVLSR 151

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253
           L+ L  LSL  N     I     GL  L NL L  N++S  +   +  + ++   ++ S 
Sbjct: 152 LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQ 207

Query: 254 YIEGEMPLDLG--TTLPNLRIFSIT 276
               +             ++    +
Sbjct: 208 ECLNKPINHQSNLVVPNTVKNTDGS 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 47/200 (23%), Positives = 71/200 (35%), Gaps = 22/200 (11%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---QINS 134
           T L L   KL   + P + NL  L  L L  N   + +   +  L++L+ L L    I+ 
Sbjct: 68  TKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKD-LSS-LKDLKKLKSLSLEHNGISD 123

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
            +G       +   L  + L  N +     +    L+KL  LS   +N I +I   L  L
Sbjct: 124 ING-----LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSL-EDNQISDI-VPLAGL 174

Query: 195 SSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGS 252
           + L+ L LS+N     I D     GLKNL  L L              N+    T     
Sbjct: 175 TKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 253 TYIEGEMPLDLGTTLPNLRI 272
             +     +          +
Sbjct: 231 GSLVTPEIISDDGDYEKPNV 250

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 8/143 (5%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
              L L  N         +    RL  L L       ++         L  + L+ N L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQ 90

Query: 161 GKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSSLRGLSLSRNGFYGSIP-DTFGGL 218
             +P    +L  L  L  +  N + ++P      L  L+ L L  N    ++P       
Sbjct: 91  -SLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPT 147

Query: 219 KNLVNLSLVVNNLSGTIPPSIFN 241
             L  LSL  NNL+  +P  + N
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLN 169

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 43/172 (25%), Positives = 59/172 (34%), Gaps = 32/172 (18%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
           T L+L   +L  T     G L  L  LDL +N    ++P     L  L +L +  N    
Sbjct: 58  TQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT- 113

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSS 196
            +P                             L +LQ L     N +  +P  L      
Sbjct: 114 SLPLGA-----------------------LRGLGELQELY-LKGNELKTLPPGLLTPTPK 149

Query: 197 LRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT 247
           L  LSL+ N     +P     GL+NL  L L  N+L  TIP   F    +  
Sbjct: 150 LEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFD 136
             LDL + +L  +L      L  L  LD+  N  T ++P      L  LQ LYL+ N   
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137

Query: 137 GEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLGNL 194
             +P    +    L  +SLA N+L  ++P+     L  L  L    N+L   IP      
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGS 194

Query: 195 SSLRGLSLSRN 205
             L    L  N
Sbjct: 195 HLLPFAFLHGN 205

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 16/186 (8%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHL 159
              LDL+NN  +         L+ L  L L  N    +I     S    L  + ++ NHL
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL 114

Query: 160 VGKIPSE-FGSLSKLQFLSTTANNLIGNIP-SSLGNLSSLRGLSLSRNGFYGSI--PDTF 215
           V +IP     SL +L+      +N I  +P      L ++  + +  N    S   P  F
Sbjct: 115 V-EIPPNLPSSLVELRI----HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 216 GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSI 275
            GL  L  L +    L+  IP  +    ++    +    I+  + L+       L    +
Sbjct: 170 DGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGL 224

Query: 276 TGNQFT 281
             NQ  
Sbjct: 225 GHNQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 33/172 (19%), Positives = 54/172 (31%), Gaps = 14/172 (8%)

Query: 78  TILDLQNLKL-VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
             +++    L      P   +   L  L +     T  IP        L  L+L  N   
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ 206

Query: 137 GEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLS 195
             I        S L  + L  N +          L  L+ L    NN +  +P+ L +L 
Sbjct: 207 -AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL-DNNKLSRVPAGLPDLK 264

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLK------NLVNLSLVVNNLS-GTIPPSIF 240
            L+ + L  N       + F  +           +SL  N +    + P+ F
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 18/162 (11%)

Query: 76  RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINS 134
           ++  L +   KL             L +L L +N     I  +      +L  L L  N 
Sbjct: 173 KLNYLRISEAKLT---GIPKDLPETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQ 228

Query: 135 FDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS--- 190
               I   + S    L  + L  N L  ++P+    L  LQ +     N I  +  +   
Sbjct: 229 IR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV-YLHTNNITKVGVNDFC 285

Query: 191 ----LGNLSSLRGLSLSRNGF-YGSI-PDTFGGLKNLVNLSL 226
                   +   G+SL  N   Y  + P TF  + + + +  
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 13/138 (9%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFD 136
             L L + K+       +   S L +L L +N     I       L  L+ L+L  N   
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS 254

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSE-------FGSLSKLQFLSTTANNL-IGNI- 187
             +PA   +   L VV L  N++  K+              +    +S   N +    + 
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 188 PSSLGNLSSLRGLSLSRN 205
           P++   ++    +     
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.1 bits (156), Expect = 8e-12
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 8/180 (4%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
           + I +                +S    LD  NN  T+ +    GHL  L+ L LQ+N   
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 137 --GEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSLGN 193
              +I   T+   +L  + ++ N +              L  L+ ++N L   I   L  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGS 252
              ++ L L  N    SIP     L+ L  L++  N L  ++P  IF  ++S+Q   + +
Sbjct: 420 PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 68  VTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG---HLRR 124
           + C  +      LD  N  L  T+  + G+L+ L+ L L+ N     +         ++ 
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQMKS 375

Query: 125 LQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL 183
           LQ L +  NS   +      S   +LL ++++ N L   I        K+  L    +N 
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH---SNK 432

Query: 184 IGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNL 231
           I +IP  +  L +L+ L+++ N    S+PD  F  L +L  + L  N  
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 31/214 (14%), Positives = 69/214 (32%), Gaps = 12/214 (5%)

Query: 79  ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHL---RRLQILYLQINSF 135
           +L+        ++   +     L  L L N   T     +I  L     +    +     
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 136 DGEIPASTSNCSNLLVVSLALNHLVGKI-----PSEFGSLSKLQFLSTTANNLIGNIPSS 190
            G++     + S   + +L+++ +V  +        +   S +   + T +         
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF---NISSIQT 247
              +S    L  S N    ++ +  G L  L  L L +N L   +         + S+Q 
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQ 378

Query: 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            D+    +  +      +   +L   +++ N  T
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 36/196 (18%), Positives = 79/196 (40%), Gaps = 8/196 (4%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSF 135
            TIL++    +    +  I +LS L+ L + +N     +   +    + L+ L L  N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 136 DGEIPASTSNCSNLLVVSLALNHL-VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
             +I        NL  + L+ N      I  EFG++S+L+FL  +  +L  +    + +L
Sbjct: 82  -VKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254
           +  + L +    +         GL++    SL +   +      I ++S     ++  + 
Sbjct: 139 NISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 255 IEGEMPLDLGTTLPNL 270
           I+  +  +  +   ++
Sbjct: 197 IKCVLEDNKCSYFLSI 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 23/210 (10%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---Q 131
             +T L      +  T    +  L+ L  L+L++N  T+ + P + +L ++  L L    
Sbjct: 41  DGITTLSAFGTGV--TTIEGVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP 96

Query: 132 INSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL 191
           + +         +   ++  + L    +    P     LS LQ L     N I NI S L
Sbjct: 97  LKNVSAI-----AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL-DLNQITNI-SPL 147

Query: 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVG 251
             L++L+ LS+       S       L  L  L    N +S  I P + ++ ++    + 
Sbjct: 148 AGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLK 203

Query: 252 STYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +  I    PL       NL I ++T    T
Sbjct: 204 NNQISDVSPLA---NTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 21/188 (11%)

Query: 97  NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---QINSFDGEIPASTSNCSNLLVVS 153
            L+   K+    ++ T+ +      L  +  L      + + +G         +NL+ + 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLE 69

Query: 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213
           L  N +     +   +L+K+  L   + N + N+ S++  L S++ L L+        P 
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELE-LSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIF 273
              GL NL  L L +N ++  I P +  ++++Q   +G+  +    PL     L  L   
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLA---NLSKLTTL 178

Query: 274 SITGNQFT 281
               N+ +
Sbjct: 179 KADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 17/205 (8%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
              +      +  T++    +L  +  L       T  I   + +L  L  L L+ N   
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDNQIT 76

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS 196
            ++     N + +  + L+ N L  K  S    L  ++ L  T +  I ++ + L  LS+
Sbjct: 77  -DLAPL-KNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLT-STQITDV-TPLAGLSN 130

Query: 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE 256
           L+ L L  N    +      GL NL  LS+    +S  + P + N+S + T       I 
Sbjct: 131 LQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186

Query: 257 GEMPLDLGTTLPNLRIFSITGNQFT 281
              PL    +LPNL    +  NQ +
Sbjct: 187 DISPLA---SLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 17/151 (11%)

Query: 93  PHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---QINSFDGEIPASTSNCSNL 149
             +  LS LQ L L  N  TN I P +  L  LQ L +   Q++          +N S L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-----LANLSKL 175

Query: 150 LVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG 209
             +    N +     S   SL  L  +    NN I ++ S L N S+L  ++L+      
Sbjct: 176 TTLKADDNKI--SDISPLASLPNLIEVHL-KNNQISDV-SPLANTSNLFIVTLTNQTIT- 230

Query: 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
           + P  +    NLV  ++V       I P+  
Sbjct: 231 NQPVFY--NNNLVVPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 10/157 (6%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
            +L L   ++  T    +  L+ LQ L + N   ++ + P + +L +L  L    N    
Sbjct: 132 QVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS- 186

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
           +I    ++  NL+ V L  N +     S   + S L  ++ T   +         NL   
Sbjct: 187 DISP-LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234
               +         P T        + +L  N  S  
Sbjct: 244 --NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 39/163 (23%), Positives = 57/163 (34%), Gaps = 14/163 (8%)

Query: 77  VTILDLQNLKLVGTLSPHI--GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQIN 133
             +LDL +  L   L        L+ L  L L +N     I  +    +  L+ L L  N
Sbjct: 41  TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 134 SFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIP--- 188
                +     S+   L V+ L  NH+V  +    F  +++LQ L  +  N I   P   
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLS-QNQISRFPVEL 155

Query: 189 -SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230
                 L  L  L LS N            L   V   L ++N
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 21/105 (20%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 181 NNLIGNIPS--SLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPP 237
           +N +  + +  +   L++L  L LS N     I  + F  + NL  L L  N+L  T+  
Sbjct: 48  HNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH-TLDE 105

Query: 238 SIF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +F ++ +++   + + +I   +  +    +  L+   ++ NQ +
Sbjct: 106 FLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 13/170 (7%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSF 135
             LDLQ+ KL  +L       L+ L+ L L +N     +P  I   L+ L+ L++  N  
Sbjct: 40  KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 136 DGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPSSL-G 192
              +P        NL  + L  N L   +P   F SL+KL +LS   N L  ++P  +  
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFD 154

Query: 193 NLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPSIFN 241
            L+SL+ L L  N     +P+  F  L  L  L L  N L   +P   F+
Sbjct: 155 KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD 202

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHL 159
              +D  +   T AIP  I      + L LQ N     +P+      + L ++ L  N L
Sbjct: 18  KNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL 73

Query: 160 VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSSLRGLSLSRNGFYGSIP-DTFGG 217
                  F  L  L+ L  T +N +  +P  +   L +L  L L RN    S+P   F  
Sbjct: 74  QTLPAGIFKELKNLETLWVT-DNKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDS 131

Query: 218 LKNLVNLSLVVNNLSGTIPPSIFN 241
           L  L  LSL  N L  ++P  +F+
Sbjct: 132 LTKLTYLSLGYNELQ-SLPKGVFD 154

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSF 135
             L + + KL   L   +   L  L +L L  N    ++PP++   L +L  L L  N  
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 136 DGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
              +P       ++L  + L  N L       F  L++L+ L    N L      +  +L
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 195 SSLRGLSLSRN 205
             L+ L L  N
Sbjct: 205 EKLKMLQLQEN 215

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 19/197 (9%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHL 159
           +  +DL  NS           L+ LQ L ++  +    I  +T    S+L+++ L  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 160 VGKIPSE-FGSLSKLQFLSTTANNLIGNI--PSSLGNLSSLRGLSLSRNGFYGSIPDT-F 215
           + ++ +  F  L+ L+ L+ T  NL G +   +    L+SL  L L  N      P + F
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 216 GGLKNLVNLSLVVNNLSGTIPPSIF-----------NISSIQTFDVGSTYIEGEMPLDLG 264
             ++    L L  N +  +I                 +SSI   D+   ++  E   +  
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP- 208

Query: 265 TTLPNLRIFSITGNQFT 281
               ++    ++GN F 
Sbjct: 209 FKNTSITTLDLSGNGFK 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 7e-10
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 101 LQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNH 158
           ++  DL  +    A+   +  H   L+ L L  N  + +I  +     ++LL ++L+ N 
Sbjct: 277 VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF 334

Query: 159 LVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPD-TFG 216
           L       F +L KL+ L  +  N I  +   S   L +L+ L+L  N    S+PD  F 
Sbjct: 335 LGSIDSRMFENLDKLEVLDLS-YNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392

Query: 217 GLKNLVNLSLVVNNL 231
            L +L  + L  N  
Sbjct: 393 RLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 44/194 (22%), Positives = 76/194 (39%), Gaps = 17/194 (8%)

Query: 59  SIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ 118
            +    +        +  +    +Q+L L         +       D  N +F       
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLIL-SNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 119 IGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFL 176
                 ++   L  +     +  S  S+ ++L  ++LA N +  KI    F  L+ L  L
Sbjct: 277 ------VKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 177 STTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGT 234
           + +  N +G+I S    NL  L  L LS N    ++   +F GL NL  L+L  N L  +
Sbjct: 329 NLS-QNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-S 385

Query: 235 IPPSIF-NISSIQT 247
           +P  IF  ++S+Q 
Sbjct: 386 VPDGIFDRLTSLQK 399

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 20/202 (9%)

Query: 97  NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSN-CSNLLVVSLA 155
            LS +   D+                  +  L L  N F   +     +  +   + SL 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 156 LNHLVGKIPS----EFGSLSKLQFLSTTANNL---------IGNIPSSL-GNLSSLRGLS 201
           L++      S     F       F    A+ +         I  +  S+  + + L  L+
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 202 LSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGSTYIEGEM 259
           L++N     I D  F GL +L+ L+L  N L  +I   +F N+  ++  D+   +I   +
Sbjct: 306 LAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-AL 362

Query: 260 PLDLGTTLPNLRIFSITGNQFT 281
                  LPNL+  ++  NQ  
Sbjct: 363 GDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 33/234 (14%)

Query: 78  TILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQ--IGHLRRLQILYLQINS 134
            IL L   + +  L       L+ L+ L L   +   A+        L  L++L L+ N+
Sbjct: 82  IILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 135 FDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEFGSLSKL----------QFLSTTANNL 183
                PAS   N     V+ L  N +      +  +                       L
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 184 IGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL-------------SLVVNN 230
                 +    +S+  L LS NGF  S+   F        +             S    N
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 231 LSGTIPPSIFN---ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                    F     S ++T D+  + I   +   + +   +L   ++  N+  
Sbjct: 261 FK-DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 41/214 (19%), Positives = 79/214 (36%), Gaps = 12/214 (5%)

Query: 76  RVTILDLQNLKLVGTLSPHIGN-----LSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL 130
            V  L++ NL +   +           L  L    ++N  F  +          + I  L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 131 QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL--IGNIP 188
            I+           + S+   ++   N     +     +L +LQ L    N L     + 
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 189 SSLGNLSSLRGLSLSRNGF-YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT 247
               N+SSL  L +S N     +   T    ++++ L+L  N L+G++   +     ++ 
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454

Query: 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            D+ +  I   +P D+ T L  L+  ++  NQ  
Sbjct: 455 LDLHNNRIM-SIPKDV-THLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 12/169 (7%)

Query: 68  VTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQI 127
           + C P     T L+        ++      L  LQ L L+ N             + +  
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSS 404

Query: 128 LYLQINSFD----GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSL-SKLQFLSTTANN 182
           L     S +         + +   ++LV++L+ N L G +   F  L  K++ L    N 
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNR 461

Query: 183 LIGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNN 230
           +  +IP  + +L +L+ L+++ N    S+PD  F  L +L  + L  N 
Sbjct: 462 I-MSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 8e-09
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 8/180 (4%)

Query: 77  VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD 136
           + I  L              + S    L+   N FT+++      L+RLQ L LQ N   
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 137 --GEIPASTSNCSNLLVVSLALNHL-VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
              ++   T N S+L  + ++LN L              +  L+ ++N L G++   L  
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-- 448

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQTFDVGS 252
              ++ L L  N    SIP     L+ L  L++  N L  ++P  +F  ++S+Q   +  
Sbjct: 449 PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 29/213 (13%), Positives = 71/213 (33%), Gaps = 12/213 (5%)

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHL---RRLQILYLQINSFD 136
           L+ +N + + T    +     L  + L++   T     ++      R ++ L +   +  
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 137 GEIPASTSNCSNLLVVSLALNHLVGK-----IPSEFGSLSKLQFLSTTANNLIGNIPSSL 191
             I       S   + SL + H+  +       + +   +++     + ++         
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVG 251
            + SS   L+ ++N F  S+      LK L  L L  N L            ++ + +  
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETL 408

Query: 252 STYIEG--EMPLDLGTTLP-NLRIFSITGNQFT 281
              +        D       ++ + +++ N  T
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 10/185 (5%)

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHL 159
            + L L  NS +    P I  L  L++L L  N     +         +L  + ++ N L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 160 VGKIPSEFGSLSKLQFLSTTANNLIGNIPSS--LGNLSSLRGLSLSRNGFYGSIPDTFGG 217
              I      ++ L+ L   + N    +P     GNL+ L  L LS   F          
Sbjct: 113 Q-NIS--CCPMASLRHLD-LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 218 LK-NLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG-TTLPNLRIFSI 275
           L  + + L LV  ++ G    S+   ++     V        + +++    L +L++ +I
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 276 TGNQF 280
             N  
Sbjct: 229 KLNDE 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 23/213 (10%)

Query: 72  PRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL- 130
             +      +L+  K V         L+ + ++   N+   + +   I +L  +  L+L 
Sbjct: 21  DAFAETIKDNLKK-KSVTDAVT-QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLN 76

Query: 131 --QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP 188
             ++           +N  NL  + L  N +   + S    L KL+ LS   +N I +I 
Sbjct: 77  GNKLTDIKP-----LANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLS-LEHNGISDI- 127

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTF 248
           + L +L  L  L L  N    +       L  L  LSL  N +S  I P +  ++ +Q  
Sbjct: 128 NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNL 183

Query: 249 DVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +   +I     L     L NL +  +   +  
Sbjct: 184 YLSKNHISDLRAL---AGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 14/140 (10%)

Query: 95  IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---QINSFDGEIPASTSNCSNLLV 151
           + +L  L+ L L +N  ++ I   + HL +L+ LYL   +I           S  + L  
Sbjct: 108 LKDLKKLKSLSLEHNGISD-ING-LVHLPQLESLYLGNNKITDITV-----LSRLTKLDT 160

Query: 152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI 211
           +SL  N +   I      L+KLQ L   + N I ++  +L  L +L  L L         
Sbjct: 161 LSLEDNQIS-DI-VPLAGLTKLQNLYL-SKNHISDL-RALAGLKNLDVLELFSQECLNKP 216

Query: 212 PDTFGGLKNLVNLSLVVNNL 231
            +    L     +     +L
Sbjct: 217 INHQSNLVVPNTVKNTDGSL 236

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 23/207 (11%)

Query: 75  QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS 134
             +T LD  N  +  T    I  L+ L KL   +N+ T  +   +     L  L    N 
Sbjct: 42  ATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNK 96

Query: 135 FDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL 194
               +    +  + L  ++   N L      +      L +L+  A N +  I   + + 
Sbjct: 97  L-TNLDV--TPLTKLTYLNCDTNKL---TKLDVSQNPLLTYLN-CARNTLTEID--VSHN 147

Query: 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY 254
           + L  L    N     +         L  L    N ++  +  S      +   +  +  
Sbjct: 148 TQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT-ELDVS--QNKLLNRLNCDTNN 202

Query: 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281
           I     LDL      L     + N+ T
Sbjct: 203 ITK---LDLN-QNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 24/204 (11%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
           T L   +  +    +  +   + L  L   +N  TN +   +  L +L  L    N    
Sbjct: 67  TKLICTSNNIT---TLDLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKL-- 118

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
                 S    L  ++ A N L  +I       ++L  L    N  I  +   +   + L
Sbjct: 119 -TKLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQL 172

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
             L  S N     +       K L  L+   NN++  +  +      +   D  S  +  
Sbjct: 173 TTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKLTE 226

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
              +D+   L  L  F  + N  T
Sbjct: 227 ---IDVT-PLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 35/204 (17%), Positives = 60/204 (29%), Gaps = 24/204 (11%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
           T L   + KL    +  +  L+ L  L+   N  T     Q   L  L      +   D 
Sbjct: 88  TYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID- 143

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
                 S+ + L  +   LN  +     +    ++L  L  + N +       +     L
Sbjct: 144 -----VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLL 193

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG 257
             L+   N     +         L  L    N L+  I  +   ++ +  FD     +  
Sbjct: 194 NRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVT--PLTQLTYFDCSVNPLT- 246

Query: 258 EMPLDLGTTLPNLRIFSITGNQFT 281
              LD+  TL  L           
Sbjct: 247 --ELDVS-TLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 40/202 (19%), Positives = 64/202 (31%), Gaps = 20/202 (9%)

Query: 80  LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI 139
                 ++  T +     L+ L  LD  N+S T+     I  L  L  L    N+    +
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT-TL 79

Query: 140 PASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRG 199
               S  +NL  ++   N L   +      L+KL +L+   N L       +     L  
Sbjct: 80  D--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL---TKLDVSQNPLLTY 131

Query: 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEM 259
           L+ +RN     I         L  L   +N         +   + + T D     I    
Sbjct: 132 LNCARNTLT-EID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE-- 184

Query: 260 PLDLGTTLPNLRIFSITGNQFT 281
            LD+      L   +   N  T
Sbjct: 185 -LDVS-QNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 25/191 (13%), Positives = 48/191 (25%), Gaps = 20/191 (10%)

Query: 95  IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL 154
           +  L+ L   D   N  T      +  L  L  +   +   D       ++ + L+    
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID------LTHNTQLI--YF 280

Query: 155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214
                      +    ++L  L       I  +   L     L  L L+       +   
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLD-CQAAGITELD--LSQNPKLVYLYLNNTELT-ELD-- 334

Query: 215 FGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG----TTLPNL 270
                 L +LS V  ++       +  I ++                 L     T   + 
Sbjct: 335 VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

Query: 271 RIFSITGNQFT 281
            +    GN   
Sbjct: 393 DLLDQFGNPMN 403

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 126 QILYLQINSFDG-EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLI 184
             L L  N F   E          L  ++ + N +       F   S +  +  T +N +
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-SNRL 93

Query: 185 GNIPSSL-GNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPSIF-N 241
            N+   +   L SL+ L L  N     +  D+F GL ++  LSL  N ++ T+ P  F  
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 242 ISSIQT 247
           + S+ T
Sbjct: 152 LHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 33/158 (20%)

Query: 77  VTILDLQNLKLVGTLSPHIG--NLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQIN 133
              L L N +    L        L  L+K++  NN  T  I          +  + L  N
Sbjct: 34  TAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 134 SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLG 192
             +  +                           F  L  L+ L    +N I  + + S  
Sbjct: 92  RLE-NVQHKM-----------------------FKGLESLKTLM-LRSNRITCVGNDSFI 126

Query: 193 NLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVN 229
            LSS+R LSL  N    ++    F  L +L  L+L+ N
Sbjct: 127 GLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 181 NNLIGNIPSS--LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPS 238
           NN    + ++     L  LR ++ S N         F G   +  + L  N L   +   
Sbjct: 41  NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHK 99

Query: 239 IF-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +F  + S++T  + S  I   +  D    L ++R+ S+  NQ T
Sbjct: 100 MFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 102 QKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHL 159
            ++ L  N+    IPP      ++L+ + L  N    E+         +L  + L  N +
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 160 VGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGL 218
                S F  L  LQ L   AN +   +   +  +L +L  LSL  N        TF  L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 219 KNLVNLSLVVN 229
           + +  + L  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 28/135 (20%)

Query: 73  RYQRVTILDLQNLKLVGTLSPHI-GNLSFLQKLDLRNNSFTNAIPPQI-GHLRRLQILYL 130
            Y+++  +DL N ++   L+P     L  L  L L  N  T  +P  +   L  LQ+L L
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111

Query: 131 QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSS 190
             N     +                           F  L  L  LS   N L      +
Sbjct: 112 NANKI-NCLRVDA-----------------------FQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 191 LGNLSSLRGLSLSRN 205
              L +++ + L++N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 181 NNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSI 239
            N I  IP  +      LR + LS N      PD F GL++L +L L  N ++  +P S+
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99

Query: 240 F-NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           F  + S+Q   + +  I   + +D    L NL + S+  N+  
Sbjct: 100 FEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 22/190 (11%)

Query: 95  IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYL---QINSFDGEIPASTSNCSNLLV 151
              L+   K +L   S T+ +      L  +Q        I S  G         +NL  
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG-----MQFFTNLKE 67

Query: 152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI 211
           + L+ N +   + S    L+KL+ LS    N + N+ + + +   L  L L  N      
Sbjct: 68  LHLSHNQIS-DL-SPLKDLTKLEELS-VNRNRLKNL-NGIPSA-CLSRLFLDNNEL--RD 120

Query: 212 PDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLR 271
            D+   LKNL  LS+  N L  +I   +  +S ++  D+    I     L     L  + 
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT---RLKKVN 175

Query: 272 IFSITGNQFT 281
              +TG +  
Sbjct: 176 WIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 17/161 (10%)

Query: 82  LQNLKLVG----TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDG 137
           L+ L L       LSP + +L+ L++L +  N   N        L RL +   ++   D 
Sbjct: 65  LKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDS 123

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL 197
                  +  NL ++S+  N L  K     G LSKL+ L     N I N    L  L  +
Sbjct: 124 -----LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLD-LHGNEITNT-GGLTRLKKV 174

Query: 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPS 238
             + L+      + P  +     L   + V +     I P 
Sbjct: 175 NWIDLTGQ-KCVNEPVKY--QPELYITNTVKDPDGRWISPY 212

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 37/208 (17%)

Query: 82  LQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQIL--------YLQIN 133
           L++ K +  L P          L +R           + +   L+ +            +
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 134 SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGN 193
            F  E        +++ V+ LA   L   +      L  +  L  + +N +  +P +L  
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLS-HNRLRALPPALAA 484

Query: 194 LSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST 253
           L  L  L  S N    ++      L  L  L L  N L           ++IQ       
Sbjct: 485 LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ--------QSAAIQPL----- 529

Query: 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                       + P L + ++ GN   
Sbjct: 530 -----------VSCPRLVLLNLQGNSLC 546

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 8/151 (5%)

Query: 102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHLV 160
           +KLDL++             L +L  L L  N     + A    + + L  + LA N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 161 GKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSSLRGLSLSRNGFYGSIPD-TFGGL 218
                 F  L++L  L     N + ++PS +   L+ L+ L L+ N    SIP   F  L
Sbjct: 97  SLPLGVFDHLTQLDKLY-LGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKL 154

Query: 219 KNLVNLSLVVNNLSGTIPPSIF-NISSIQTF 248
            NL  LSL  N L  ++P   F  +  +QT 
Sbjct: 155 TNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI 184

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 78  TILDLQNLKLVGTLSP------HIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQ 131
              + + ++L G + P       +  L   + L L  N+        +  +  L+IL L 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLG 78

Query: 132 INSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-- 189
            N    +I    +    L  + ++ N +   + S    L  L+ L  + NN I N     
Sbjct: 79  RNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMS-NNKITNWGEID 134

Query: 190 SLGNLSSLRGLSLSRN 205
            L  L  L  L L+ N
Sbjct: 135 KLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
              I  + ++L  L + + L+LS N     I  +  G++NL  LSL  N +   I     
Sbjct: 34  IPPIEKMDATLSTLKACKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIK-KIENLDA 90

Query: 241 NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ 279
              +++   +    I     ++    L NLR+  ++ N+
Sbjct: 91  VADTLEELWISYNQIASLSGIE---KLVNLRVLYMSNNK 126

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 30/154 (19%)

Query: 128 LYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNI 187
           L+  I   + ++ A+ S       ++L+ N++  KI S    +  L+ LS    NLI  I
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSL-GRNLIKKI 85

Query: 188 PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQT 247
            +      +L  L +S N    +       L NL  L +  N ++        N   I  
Sbjct: 86  ENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKIT--------NWGEIDK 135

Query: 248 FDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                              L  L    + GN   
Sbjct: 136 L----------------AALDKLEDLLLAGNPLY 153

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 139 IPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLR 198
           IP   +       + L  N     +P E  +   L  +  + N +      S  N++ L 
Sbjct: 29  IPRDVTE------LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 199 GLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQT 247
            L LS N     IP  TF GLK+L  LSL  N++S  +P   F ++S++  
Sbjct: 82  TLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 12/119 (10%)

Query: 92  SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQ---INSFDGEIPASTSNCSN 148
           +    N    ++LDLR       I      L +   +      I   DG           
Sbjct: 12  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRR 65

Query: 149 LLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP--SSLGNLSSLRGLSLSRN 205
           L  + +  N +         +L  L  L  T NN +  +     L +L SL  L + RN
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILT-NNSLVELGDLDPLASLKSLTYLCILRN 123

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 15/166 (9%)

Query: 76  RVTILDLQNLKLVGT--LSPHIGNLSFLQKLDLRNNSFTN-------AIPPQIGHLRRLQ 126
              +L L + +   T  L+        L++LDLR +   +         P     L  L 
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLST------TA 180
           I  L        +    + C NL  + L     + K+ +      +L+ L T        
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250

Query: 181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSL 226
            ++   +  +L     LR LS   +     +P  +     L  L+L
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNL 296

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 39/137 (28%), Positives = 53/137 (38%), Gaps = 19/137 (13%)

Query: 102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS--------FDGEIPASTSNCSNLLVVS 153
           Q L L +N  T   P     L  L+ LYL  N         FD        + + L V+ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD--------SLTQLTVLD 94

Query: 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213
           L  N L     + F  L  L+ L    N L   +P  +  L+ L  L+L +N    SIP 
Sbjct: 95  LGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL-KSIPH 152

Query: 214 -TFGGLKNLVNLSLVVN 229
             F  L +L +  L  N
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 15/114 (13%)

Query: 139 IPASTSNCSNLLVVSLALNHLVGKIPSE--FGSLSKLQFLSTTANNLIGNIPSSL-GNLS 195
           IP  T+       + L  N L  +I S+  FG L  L  L     N +  I  +     S
Sbjct: 27  IPLHTTE------LLLNDNELG-RISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGAS 78

Query: 196 SLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNLSGTIPPSIF-NISSIQT 247
            ++ L L  N     I +  F GL  L  L+L  N +S  + P  F +++S+ +
Sbjct: 79  HIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTS 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 27/138 (19%)

Query: 145 NCSNLLVVSLALNHL-VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLS 203
             S++  + L  +    GK+        +L+FLST  N  + +I ++L  L+ L+ L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST-INVGLTSI-ANLPKLNKLKKLELS 72

Query: 204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDL 263
            N   G +        NL +L+L  N +         ++S+I+                 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK--------DLSTIEPL--------------- 109

Query: 264 GTTLPNLRIFSITGNQFT 281
              L NL+   +   + T
Sbjct: 110 -KKLENLKSLDLFNCEVT 126

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 10/162 (6%)

Query: 72  PRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGH-LRRLQILYL 130
                V  L L   KL       +  L+ L  L L  N    ++P  +   L  L+ L L
Sbjct: 60  QYLPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVL 116

Query: 131 QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNIPS 189
             N             +NL  ++LA N L   +P   F  L+ L  L  + N L  ++P 
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL-QSLPE 174

Query: 190 SL-GNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVN 229
            +   L+ L+ L L +N    S+PD  F  L +L  + L  N
Sbjct: 175 GVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 215

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 20/140 (14%), Positives = 34/140 (24%), Gaps = 50/140 (35%)

Query: 114 AIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKL 173
                +     L  LY+              N                            
Sbjct: 22  DSLHHLPGAENLTELYI-------------EN---------------------------- 40

Query: 174 QFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232
                     + ++    L  L  LR L++ ++G     PD F     L  L+L  N L 
Sbjct: 41  -------QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 233 GTIPPSIFNISSIQTFDVGS 252
            ++        S+Q   +  
Sbjct: 94  -SLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 138 EIPASTSNCSNLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNLIGNI-PSSLGNLS 195
           +         NL  + +     +  +       L +L+ L T   + +  + P +     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL-TIVKSGLRFVAPDAFHFTP 80

Query: 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL 231
            L  L+LS N        T  GL +L  L L  N L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.83
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.18
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.65
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.52
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.38
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.81

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.9e-39  Score=273.30  Aligned_cols=248  Identities=30%  Similarity=0.513  Sum_probs=197.4

Q ss_pred             CCCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEEcCCCCcee--ecCccccCCCCCC
Q 036746           29 SGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQ--WYGVTCSPRY--QRVTILDLQNLKLVG--TLSPHIGNLSFLQ  102 (281)
Q Consensus        29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L~  102 (281)
                      .|.++|.++|++||+.+. ++. .+.+|..+.++|.  |.|+.|....  ++++.|+++++.+.+  .+|..+.++++|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            477889999999999996 444 6889988888998  9999998654  799999999999998  8999999999999


Q ss_pred             EEeCCC-CCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc
Q 036746          103 KLDLRN-NSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN  181 (281)
Q Consensus       103 ~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  181 (281)
                      +|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            999995 8898889999999999999999999999888998999999999999999998888888888899999999988


Q ss_pred             ccccCCCcccCCCC-CCCEEEcccCcCcccCCccCCC-----------------------CCCCCEEEcccCccccccCh
Q 036746          182 NLIGNIPSSLGNLS-SLRGLSLSRNGFYGSIPDTFGG-----------------------LKNLVNLSLVVNNLSGTIPP  237 (281)
Q Consensus       182 ~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~-----------------------l~~L~~L~l~~n~l~~~~p~  237 (281)
                      .+.+.+|..+..++ +|++|++++|.+++.+|..+..                       +++|+.|++++|.+++.+|.
T Consensus       160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  239 (313)
T 1ogq_A          160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK  239 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred             cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence            88878888887776 7788888777776555555544                       44445555555544433332


Q ss_pred             hccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          238 SIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       238 ~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                       +..+++|++|++++|.+++.+|..+. .+++|++|++++|++
T Consensus       240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          240 -VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNL  280 (313)
T ss_dssp             -CCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEE
T ss_pred             -ccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCcc
Confidence             44556666666666666666666554 566777777777665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.4e-36  Score=275.73  Aligned_cols=246  Identities=21%  Similarity=0.334  Sum_probs=215.4

Q ss_pred             CCHhHHHHHHHHHhhcccCCCCCCC-------CCCCCCCCCcc---cceEecCCCCcEEEEEcCCCCceeecCccccCCC
Q 036746           30 GNETDRAALLEFKSKITNDALGVLG-------SWNDSIHFCQW---YGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLS   99 (281)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~   99 (281)
                      ....|+.||.++++++.+..|....       +|..+.++|.|   .||.|+.. ++|+.|+++++++.|.+|+.+++++
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence            3347899999999999877666444       89988999999   99999866 8999999999999999999999999


Q ss_pred             CCCEEeCCCCCC--------------------------------------------------------------------
Q 036746          100 FLQKLDLRNNSF--------------------------------------------------------------------  111 (281)
Q Consensus       100 ~L~~L~l~~n~l--------------------------------------------------------------------  111 (281)
                      +|++|++++|.+                                                                    
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            999999998843                                                                    


Q ss_pred             ----------ccCCchhccCCCCCCEEEccCccCccc-----------------CCCCCC--CCCCCcEEEccCCCCCCC
Q 036746          112 ----------TNAIPPQIGHLRRLQILYLQINSFDGE-----------------IPASTS--NCSNLLVVSLALNHLVGK  162 (281)
Q Consensus       112 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~  162 (281)
                                ++ +|..++++++|++|++++|.+++.                 +|..+.  ++++|++|++++|.+.+.
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~  264 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK  264 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence                      33 778899999999999999999975                 999999  999999999999999999


Q ss_pred             CCcccCCCCCCcEEeccccc-ccc-CCCcccCCC------CCCCEEEcccCcCcccCCc--cCCCCCCCCEEEcccCccc
Q 036746          163 IPSEFGSLSKLQFLSTTANN-LIG-NIPSSLGNL------SSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       163 ~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~  232 (281)
                      +|..++++++|++|++++|. +.+ .+|..++.+      ++|++|++++|.++ .+|.  .++++++|+.|++++|.++
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence            99999999999999999998 887 778777665      88999999999998 8887  8888999999999999998


Q ss_pred             cccChhccCCCCCcEEEcccCcccccCChhhhhCCCC-CCEEeccCccCC
Q 036746          233 GTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN-LRIFSITGNQFT  281 (281)
Q Consensus       233 ~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~-L~~L~l~~N~lt  281 (281)
                      |.+| .+..+++|+.|++++|.++ .+|..+. .+++ |+.|++++|+++
T Consensus       344 g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          344 GKLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             EECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS
T ss_pred             cchh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc
Confidence            8888 7788888888888888888 7777765 6777 888888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=9.3e-36  Score=254.05  Aligned_cols=250  Identities=18%  Similarity=0.249  Sum_probs=196.4

Q ss_pred             cccCCCCHhHHHHHHHHHhhcccCCCCCCCCC----CCCCCCCcccceEec--------CCCCcEEEEEcCCCCceeecC
Q 036746           25 AFSVSGNETDRAALLEFKSKITNDALGVLGSW----NDSIHFCQWYGVTCS--------PRYQRVTILDLQNLKLVGTLS   92 (281)
Q Consensus        25 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~~~--------~~~~~l~~L~l~~~~l~~~~~   92 (281)
                      +++.....+++.+|++||..+..++......|    ....+.|.|.|+.|.        ....+++.|+++++.+. .+|
T Consensus        19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp   97 (328)
T 4fcg_A           19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP   97 (328)
T ss_dssp             CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred             eeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence            34444566888999999998866776667788    456788999999884        23478889999998886 777


Q ss_pred             ccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCC---
Q 036746           93 PHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGS---  169 (281)
Q Consensus        93 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~---  169 (281)
                      ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..   
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~  175 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA  175 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred             hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence            77888888999999988888 78888888888888888888888 77888888888888888887777777776654   


Q ss_pred             ------CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCC
Q 036746          170 ------LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS  243 (281)
Q Consensus       170 ------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~  243 (281)
                            +++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++
T Consensus       176 ~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence                  788888888888777 67777777788888888888877 4566677777888888888777777777777777


Q ss_pred             CCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          244 SIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       244 ~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +|+.|++++|.+.+.+|..+. .+++|+.|++++|++
T Consensus       254 ~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          254 PLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVN  289 (328)
T ss_dssp             CCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCTT
T ss_pred             CCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCCc
Confidence            888888888777777777665 677888888887765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.6e-34  Score=270.78  Aligned_cols=247  Identities=26%  Similarity=0.388  Sum_probs=165.8

Q ss_pred             cCCCCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCceee---cC-----------
Q 036746           27 SVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGT---LS-----------   92 (281)
Q Consensus        27 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~---~~-----------   92 (281)
                      +++..++|++||++||+.+. ++. .+.+|..++++|.|.||.|+  .++|+.|+++++.+.|.   +|           
T Consensus         6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~   81 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES   81 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred             cccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence            33456789999999999997 665 89999988899999999998  48999999999998876   44           


Q ss_pred             ------------ccccCCCCCCEEeCCCCCCccCCch--hccCCCCCCEEEccCccCcccCCCCC-CCCCCCcEEEccCC
Q 036746           93 ------------PHIGNLSFLQKLDLRNNSFTNAIPP--QIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALN  157 (281)
Q Consensus        93 ------------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n  157 (281)
                                  ..++.+++|++|++++|.+.+.+|.  .++++++|++|++++|.+.+..|..+ .++++|++|++++|
T Consensus        82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n  161 (768)
T 3rgz_A           82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN  161 (768)
T ss_dssp             EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred             cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence                        4667778888888888888877777  78888888888888888877766655 67777777777777


Q ss_pred             CCCCCCCcc---cCCCCCCcEEecccccc----------------------ccCCCcccCCCCCCCEEEcccCcCcccCC
Q 036746          158 HLVGKIPSE---FGSLSKLQFLSTTANNL----------------------IGNIPSSLGNLSSLRGLSLSRNGFYGSIP  212 (281)
Q Consensus       158 ~~~~~~~~~---l~~l~~L~~L~l~~n~~----------------------~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  212 (281)
                      .+.+..|..   +..+++|++|++++|.+                      .+..|. +..+++|++|++++|.+++.+|
T Consensus       162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred             ccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence            776555444   44444444444444444                      333333 4444455555555555544444


Q ss_pred             ccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          213 DTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       213 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ..+.++++|++|++++|.+++.+|..  .+++|++|++++|.+++.+|..+...+++|++|++++|++
T Consensus       241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l  306 (768)
T 3rgz_A          241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF  306 (768)
T ss_dssp             HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred             HHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence            44555555555555555554444332  4555555555555555566665553346677777766654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-33  Score=265.97  Aligned_cols=245  Identities=20%  Similarity=0.245  Sum_probs=206.5

Q ss_pred             CCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCC--Ccc------------cceEecCCCCcEEEEEcCCCCceeecCccc
Q 036746           30 GNETDRAALLEFKSKITNDALGVLGSWNDSIHF--CQW------------YGVTCSPRYQRVTILDLQNLKLVGTLSPHI   95 (281)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~--c~~------------~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~   95 (281)
                      ...+|+.+|++||+++.+..|....+|.. .++  |.|            .|+.|... ++|+.|+++++++.|.+|+.+
T Consensus       266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~-~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l  343 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGKNWRYYSGTIN-NTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAI  343 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCCSSCS-SCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGG
T ss_pred             cchHHHHHHHHHHHHcCCCCCCcCCCccc-ccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHH
Confidence            44578999999999996432222222211 244  999            99999863 899999999999999999999


Q ss_pred             cCCCCCCEEeC-CCCCCccC------------------------------------------------------------
Q 036746           96 GNLSFLQKLDL-RNNSFTNA------------------------------------------------------------  114 (281)
Q Consensus        96 ~~l~~L~~L~l-~~n~l~~~------------------------------------------------------------  114 (281)
                      +++++|++|+| ++|.+.|.                                                            
T Consensus       344 ~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l  423 (876)
T 4ecn_A          344 GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI  423 (876)
T ss_dssp             GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCC
T ss_pred             hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccccc
Confidence            99999999999 76654332                                                            


Q ss_pred             ----------------CchhccCCCCCCEEEccCccCcc-----------------cCCCCCC--CCCCCcEEEccCCCC
Q 036746          115 ----------------IPPQIGHLRRLQILYLQINSFDG-----------------EIPASTS--NCSNLLVVSLALNHL  159 (281)
Q Consensus       115 ----------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~  159 (281)
                                      +|..|.++++|++|++++|.+++                 .+|..++  ++++|++|++++|.+
T Consensus       424 ~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l  503 (876)
T 4ecn_A          424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN  503 (876)
T ss_dssp             CCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred             chhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence                            77889999999999999999997                 3999988  999999999999999


Q ss_pred             CCCCCcccCCCCCCcEEeccccc-ccc-CCCcccCC-------CCCCCEEEcccCcCcccCCc--cCCCCCCCCEEEccc
Q 036746          160 VGKIPSEFGSLSKLQFLSTTANN-LIG-NIPSSLGN-------LSSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVV  228 (281)
Q Consensus       160 ~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~-------l~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~  228 (281)
                      .+.+|..++.+++|+.|++++|. +.+ .+|..+..       +++|++|++++|.++ .+|.  .++++++|+.|++++
T Consensus       504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~  582 (876)
T 4ecn_A          504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVH  582 (876)
T ss_dssp             CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTT
T ss_pred             CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCC
Confidence            99999999999999999999998 877 67765544       448999999999998 8888  888999999999999


Q ss_pred             CccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCC-CCEEeccCccCC
Q 036746          229 NNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN-LRIFSITGNQFT  281 (281)
Q Consensus       229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~-L~~L~l~~N~lt  281 (281)
                      |.++ .+| .+..+++|+.|++++|.++ .+|..+. .+++ |+.|++++|+++
T Consensus       583 N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          583 NKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC
T ss_pred             CCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC
Confidence            9998 777 7888899999999999988 7887776 6777 999999988874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.3e-31  Score=225.53  Aligned_cols=202  Identities=25%  Similarity=0.438  Sum_probs=142.6

Q ss_pred             CcEEEEEcCC-CCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           75 QRVTILDLQN-LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      ++++.|++++ +.+.+.+|..++++++|++|++++|.+.+.+|..|..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            4566666663 555555565566666666666666655555555555555566666655555555555555555555555


Q ss_pred             ccCCCCCCCCCcccCCCC-CCc-----------------------EEeccccccccCCCcccCCCCCCCEEEcccCcCcc
Q 036746          154 LALNHLVGKIPSEFGSLS-KLQ-----------------------FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~-~L~-----------------------~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      +++|.+.+.+|..+..++ +|+                       +|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            555555545555554444 444                       44555555544555666777888888888888876


Q ss_pred             cCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746          210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      .+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..  ..+++|+.+++++|+
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence            6654 788999999999999999999999999999999999999999999876  478999999999997

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.4e-30  Score=245.39  Aligned_cols=206  Identities=28%  Similarity=0.445  Sum_probs=144.5

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL  521 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence            44555555555555555555556666666666666666556666666666666666666666666666666666666666


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCccc-------------------------------------------
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-------------------------------------------  191 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-------------------------------------------  191 (281)
                      ++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+                                           
T Consensus       522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (768)
T 3rgz_A          522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS  601 (768)
T ss_dssp             CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred             CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence            6666666666666666777777777666665555332                                           


Q ss_pred             ---------------------------CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCC
Q 036746          192 ---------------------------GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISS  244 (281)
Q Consensus       192 ---------------------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~  244 (281)
                                                 ..+++|++|++++|.++|.+|..+++++.|+.|++++|.+++.+|..++++++
T Consensus       602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~  681 (768)
T 3rgz_A          602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG  681 (768)
T ss_dssp             GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence                                       22356777788888887788888888888888888888888888888888888


Q ss_pred             CcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          245 IQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       245 L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      |+.||+++|+++|.+|..+. .+++|++|++++|+++
T Consensus       682 L~~LdLs~N~l~g~ip~~l~-~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          682 LNILDLSSNKLDGRIPQAMS-ALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCEEECCSSCCEECCCGGGG-GCCCCSEEECCSSEEE
T ss_pred             CCEEECCCCcccCcCChHHh-CCCCCCEEECcCCccc
Confidence            88888888888888887776 6888888888888763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=1.7e-29  Score=211.21  Aligned_cols=206  Identities=20%  Similarity=0.202  Sum_probs=187.8

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCcc-CcccCCCCCCCCCCCcEEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS-FDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  153 (281)
                      ++++.|+++++.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|. +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            689999999999998777889999999999999999998778899999999999999997 7755578899999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            99999998778889999999999999999986666778999999999999999996666779999999999999999998


Q ss_pred             ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ..|..+..+++|+.|++++|.++ .++...+..+++|+.|++++|+++
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCcc
Confidence            88999999999999999999999 466665568999999999999863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.97  E-value=2.2e-29  Score=208.93  Aligned_cols=217  Identities=22%  Similarity=0.283  Sum_probs=188.2

Q ss_pred             CCCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccC
Q 036746           60 IHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI  139 (281)
Q Consensus        60 ~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  139 (281)
                      .+.|.|.|+.|... ...+.++++++++. .+|..+.  +.+++|++++|.+.+..+..|.++++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            36899999988643 45678999999987 4666554  68999999999999766678999999999999999999444


Q ss_pred             CCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCC
Q 036746          140 PASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK  219 (281)
Q Consensus       140 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~  219 (281)
                      +..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            45568899999999999999976667789999999999999999877777889999999999999999966667789999


Q ss_pred             CCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          220 NLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       220 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +|++|++++|.+++..+..+..+++|++|++++|+++ .+|...+..+++|+.|++++|+++
T Consensus       158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence            9999999999999766667889999999999999999 567666668999999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.4e-28  Score=218.64  Aligned_cols=203  Identities=22%  Similarity=0.229  Sum_probs=140.1

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            56778888888887777777888888888888888887666677777888888888888877444455777777888888


Q ss_pred             cCCCCCCCCCcccCC-------------------------CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcc
Q 036746          155 ALNHLVGKIPSEFGS-------------------------LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~-------------------------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      ++|.+....+..+..                         +++|++|++++|.+.+ +| .+..+++|++|++++|.+++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            777776443334444                         4455555555555442 22 25555666666666666666


Q ss_pred             cCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ..|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|...+..+++|+.|++++|++
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCc
Confidence            66666777777777777777777666666777777777777777777 45555555677777777777765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.1e-29  Score=212.39  Aligned_cols=202  Identities=21%  Similarity=0.298  Sum_probs=189.3

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCC--------
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSN--------  145 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------  145 (281)
                      .++++.|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..        
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence            478999999999998 88999999999999999999999 78999999999999999999988899988765        


Q ss_pred             -CCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEE
Q 036746          146 -CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL  224 (281)
Q Consensus       146 -l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  224 (281)
                       +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence             999999999999999 88999999999999999999998 467789999999999999999999999999999999999


Q ss_pred             EcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          225 SLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       225 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++++|.+.+.+|..+..+++|++|++++|++.+.+|..+. .+++|+.+++..|.+
T Consensus       259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQ  313 (328)
T ss_dssp             ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECCGGGS
T ss_pred             ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCCHHHH
Confidence            9999999999999999999999999999999999999987 799999999988764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=9.9e-29  Score=208.54  Aligned_cols=205  Identities=22%  Similarity=0.259  Sum_probs=134.7

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCcc-------------------------CCchhccCCCCCCEEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTN-------------------------AIPPQIGHLRRLQILY  129 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~  129 (281)
                      ++++.|++++|.+....+..+.++++|++|++++|.+..                         .+|..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            356666666666553333334555666666665555541                         2333455566666666


Q ss_pred             ccCccCcccCC-CCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccccc-CCCcccCCCCCCCEEEcccCcC
Q 036746          130 LQINSFDGEIP-ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGF  207 (281)
Q Consensus       130 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~  207 (281)
                      +++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            66666653222 356667777777777777766666667777777777777777765 4566677777777777777777


Q ss_pred             cccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCC-CCCCEEeccCccC
Q 036746          208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTL-PNLRIFSITGNQF  280 (281)
Q Consensus       208 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~-~~L~~L~l~~N~l  280 (281)
                      ++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+. .+ ++|++|++++|++
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC-CCCTTCCEEECTTCCE
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH-hhhccCCEEEccCCCe
Confidence            766677777777777777777777765555677777788888888877766665555 45 4788888887775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=8.5e-28  Score=199.91  Aligned_cols=205  Identities=20%  Similarity=0.182  Sum_probs=181.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            56999999999998877778999999999999999999777778999999999999999999777788999999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccC-CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCC----EEEcccC
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV----NLSLVVN  229 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~----~L~l~~n  229 (281)
                      ++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99999977666899999999999999999763 688999999999999999999977777777666666    8999999


Q ss_pred             ccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          230 NLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       230 ~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+++.. .......+|+.|++++|.++ .+|..++..+++|+.|++++|+++
T Consensus       188 ~l~~~~-~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          188 PMNFIQ-PGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CCCEEC-TTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccccC-ccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccc
Confidence            998554 44445568999999999999 677777668999999999999975

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=210.41  Aligned_cols=202  Identities=23%  Similarity=0.258  Sum_probs=127.1

Q ss_pred             cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc
Q 036746           76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  155 (281)
                      +++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44455555555544444445555555555555555544444444455555555555555542222334444455555554


Q ss_pred             CCCCCCCCC-------------------------cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCccc
Q 036746          156 LNHLVGKIP-------------------------SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS  210 (281)
Q Consensus       156 ~n~~~~~~~-------------------------~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  210 (281)
                      +|.+....+                         ..+..+++|++|++++|.+. .+| .+..+++|++|++++|.+++.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence            444442222                         24556666666666666665 344 366677788888888888776


Q ss_pred             CCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|...+..+++|+.|++++|++
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence            7778888888888888888888777777888888888888888888 56666656788888888888875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=9e-28  Score=202.65  Aligned_cols=185  Identities=21%  Similarity=0.256  Sum_probs=166.1

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCc-hhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-PQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (281)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus        77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            467888999998886 466678899999999999999986544 578899999999999999998888889999999999


Q ss_pred             EccCCCCCC-CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcc
Q 036746          153 SLALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL  231 (281)
Q Consensus       153 ~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l  231 (281)
                      ++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            999999986 5788899999999999999999987788899999999999999999977777889999999999999999


Q ss_pred             ccccChhccCCC-CCcEEEcccCcccccC
Q 036746          232 SGTIPPSIFNIS-SIQTFDVGSTYIEGEM  259 (281)
Q Consensus       232 ~~~~p~~l~~l~-~L~~L~l~~n~i~~~~  259 (281)
                      ++..|..+..++ +|+.|++++|++++..
T Consensus       236 ~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          236 MTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             cccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            988888888884 9999999999998643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=3e-27  Score=209.90  Aligned_cols=113  Identities=19%  Similarity=0.250  Sum_probs=57.6

Q ss_pred             cCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCc
Q 036746          167 FGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQ  246 (281)
Q Consensus       167 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  246 (281)
                      +..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            33444444444444444444444444455555555555555444444555555555555555555544455555555555


Q ss_pred             EEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          247 TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       247 ~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +|++++|+++ .+|...+..+++|++|++++|++
T Consensus       375 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          375 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             EEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECCCCccc-cCCHhHhccCCcccEEEccCCCc
Confidence            5555555555 34443433555555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=2.9e-27  Score=209.99  Aligned_cols=207  Identities=21%  Similarity=0.274  Sum_probs=172.4

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchh--ccCCCCCCEEEccCccCcccCCCC-CCCCCCCc
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ--IGHLRRLQILYLQINSFDGEIPAS-TSNCSNLL  150 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~  150 (281)
                      .++++.|++++|.+.+..|..++++++|++|++++|.+.+..+..  +..+++|++|++++|.+++..|.. +.++++|+
T Consensus        78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            478899999999988888888888999999999999887644444  778888999999988888666665 77888888


Q ss_pred             EEEccCCCCCCCCCcccCCC------------------------------------------------------------
Q 036746          151 VVSLALNHLVGKIPSEFGSL------------------------------------------------------------  170 (281)
Q Consensus       151 ~L~l~~n~~~~~~~~~l~~l------------------------------------------------------------  170 (281)
                      +|++++|.+.+..+..+..+                                                            
T Consensus       158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  237 (455)
T 3v47_A          158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA  237 (455)
T ss_dssp             EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred             EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence            88888888776554433221                                                            


Q ss_pred             -------------------------------------CCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCc
Q 036746          171 -------------------------------------SKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPD  213 (281)
Q Consensus       171 -------------------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  213 (281)
                                                           ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.
T Consensus       238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  317 (455)
T 3v47_A          238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN  317 (455)
T ss_dssp             TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence                                                 3566666666666666788899999999999999999988899


Q ss_pred             cCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          214 TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       214 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+.++++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|+++
T Consensus       318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLK  384 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCS
T ss_pred             HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccc
Confidence            999999999999999999987788999999999999999999976676665 7999999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=8e-27  Score=199.13  Aligned_cols=215  Identities=23%  Similarity=0.301  Sum_probs=170.5

Q ss_pred             CCcccceEecCC---------CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC
Q 036746           62 FCQWYGVTCSPR---------YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI  132 (281)
Q Consensus        62 ~c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  132 (281)
                      .|.|..+.|...         .++++.|++++|.+.+..|..+.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            366777766521         25799999999999887788899999999999999999987888999999999999999


Q ss_pred             ccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccccc--CCCcccCCC----------------
Q 036746          133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG--NIPSSLGNL----------------  194 (281)
Q Consensus       133 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l----------------  194 (281)
                      |.++ .+|..+.  ++|++|++++|.+....+..+..+++|++|++++|.+..  ..+..+..+                
T Consensus       112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred             CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence            9998 7777665  789999999998886656668888888888888887742  334433332                


Q ss_pred             ----CCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCC
Q 036746          195 ----SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL  270 (281)
Q Consensus       195 ----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L  270 (281)
                          ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+. .+++|
T Consensus       189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L  266 (332)
T 2ft3_A          189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLL  266 (332)
T ss_dssp             SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTC
T ss_pred             ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccC
Confidence                35667777777777666677788888888888888888666667888888888888888888 7777765 68888


Q ss_pred             CEEeccCccCC
Q 036746          271 RIFSITGNQFT  281 (281)
Q Consensus       271 ~~L~l~~N~lt  281 (281)
                      +.|++++|+++
T Consensus       267 ~~L~l~~N~l~  277 (332)
T 2ft3_A          267 QVVYLHTNNIT  277 (332)
T ss_dssp             CEEECCSSCCC
T ss_pred             CEEECCCCCCC
Confidence            88888888774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.7e-28  Score=207.95  Aligned_cols=204  Identities=19%  Similarity=0.199  Sum_probs=119.9

Q ss_pred             cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC-CCCCCCCCcEEEc
Q 036746           76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA-STSNCSNLLVVSL  154 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l  154 (281)
                      +++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.++ .+|. .+.++++|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEEC
Confidence            4555555555555444445555555555555555555444455555555555555555555 2332 2455555555555


Q ss_pred             cCCCCCCCCC-cccCCCCCCcEEeccccc-cccCCCcccCCCCCCCEEEcccCcCcccCCccCCC---------------
Q 036746          155 ALNHLVGKIP-SEFGSLSKLQFLSTTANN-LIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGG---------------  217 (281)
Q Consensus       155 ~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~---------------  217 (281)
                      ++|.+....+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..|..+..               
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            5555552222 245555555555555552 33333344555555555555555555444544444               


Q ss_pred             ---------CCCCCEEEcccCccccc-------------------------------cChhccCCCCCcEEEcccCcccc
Q 036746          218 ---------LKNLVNLSLVVNNLSGT-------------------------------IPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       218 ---------l~~L~~L~l~~n~l~~~-------------------------------~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                               +++|+.|++++|.+++.                               +|..+..+++|+.|++++|+++ 
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence                     45555555555555532                               2345667888999999999988 


Q ss_pred             cCChhhhhCCCCCCEEeccCccCC
Q 036746          258 EMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       258 ~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+|..++..+++|++|++++|+++
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCcc
Confidence            788887668899999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=7e-27  Score=206.93  Aligned_cols=182  Identities=23%  Similarity=0.256  Sum_probs=146.3

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-------------
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP-------------  140 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------  140 (281)
                      .++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+             
T Consensus        87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  166 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD  166 (440)
T ss_dssp             CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence            3667777777777776666667777777777777777765444556667777777777666553222             


Q ss_pred             ------------CCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc
Q 036746          141 ------------ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       141 ------------~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                                  ..|.++++|++|++++|.+. .+| .+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence                        24666778888888888887 445 5788999999999999999888899999999999999999999


Q ss_pred             ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc
Q 036746          209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                      +..+..+.++++|+.|++++|++++..+..+..+++|+.|++++|++..
T Consensus       245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            8889999999999999999999997777778899999999999999873

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=8.5e-27  Score=207.05  Aligned_cols=183  Identities=21%  Similarity=0.232  Sum_probs=152.8

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC-----------
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA-----------  141 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------  141 (281)
                      ..++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+.           
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            347788888888888877777888888888888888888866666677888888888888877633222           


Q ss_pred             --------------CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcC
Q 036746          142 --------------STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGF  207 (281)
Q Consensus       142 --------------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  207 (281)
                                    .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence                          35566777777777777773 33 578899999999999999988889999999999999999999


Q ss_pred             cccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc
Q 036746          208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       208 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                      .+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++..
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            98889999999999999999999997666778899999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.9e-26  Score=191.54  Aligned_cols=200  Identities=22%  Similarity=0.211  Sum_probs=177.8

Q ss_pred             EEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC
Q 036746           78 TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN  157 (281)
Q Consensus        78 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  157 (281)
                      +.++.+++++. .+|..+  .++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            67788888875 455544  479999999999999777778999999999999999999777889999999999999999


Q ss_pred             C-CCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC
Q 036746          158 H-LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP  236 (281)
Q Consensus       158 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  236 (281)
                      . +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            7 776668889999999999999999997778889999999999999999997667779999999999999999996666


Q ss_pred             hhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          237 PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       237 ~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ..+..+++|++|++++|.+++..|..+. .+++|+.|++++|+++
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLS  214 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCS
T ss_pred             HHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCcCC
Confidence            6789999999999999999977677665 7999999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1.9e-26  Score=196.54  Aligned_cols=215  Identities=24%  Similarity=0.323  Sum_probs=157.2

Q ss_pred             CCcccceEecC---------CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC
Q 036746           62 FCQWYGVTCSP---------RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI  132 (281)
Q Consensus        62 ~c~~~~~~~~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  132 (281)
                      .|.+..+.|..         -.+.++.|++++|.+.+..+..+.++++|++|++++|.+.+..|..|..+++|++|++++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            45666666642         125788999999999877777899999999999999999977788899999999999999


Q ss_pred             ccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccccc--CCCcccCCC----------------
Q 036746          133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG--NIPSSLGNL----------------  194 (281)
Q Consensus       133 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l----------------  194 (281)
                      |.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+                
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            9988 6666543  566666666666664444445555555555555555431  233333333                


Q ss_pred             -----CCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746          195 -----SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       195 -----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~  269 (281)
                           ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+. .+++
T Consensus       187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~  264 (330)
T 1xku_A          187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKY  264 (330)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSS
T ss_pred             CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCC
Confidence                 45666666666666556677778888888888888887666667778888888888888887 7777665 6788


Q ss_pred             CCEEeccCccCC
Q 036746          270 LRIFSITGNQFT  281 (281)
Q Consensus       270 L~~L~l~~N~lt  281 (281)
                      |++|++++|+++
T Consensus       265 L~~L~l~~N~i~  276 (330)
T 1xku_A          265 IQVVYLHNNNIS  276 (330)
T ss_dssp             CCEEECCSSCCC
T ss_pred             cCEEECCCCcCC
Confidence            888888888774

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=3.6e-26  Score=191.45  Aligned_cols=200  Identities=20%  Similarity=0.176  Sum_probs=173.6

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      .++++.++++++++. .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+++ ++.. ..+++|++|+
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEE
T ss_pred             cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEE
Confidence            367889999999986 5666554  789999999999987778889999999999999999984 3433 7889999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            9999998 778888999999999999999987666789999999999999999997667778899999999999999986


Q ss_pred             ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ..+..+..+++|+.|++++|+++ .+|..++ .+++|+.|++++|++.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCcc
Confidence            55556778999999999999999 8898888 6789999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=205.88  Aligned_cols=206  Identities=19%  Similarity=0.164  Sum_probs=118.3

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      .++++.|++++|.+.+..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|+
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            35666666666666666566666666666666666666644444556666666666666666655566666666666666


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence            66666665555566666666666666666654333445566666666666666654444455555555555555444333


Q ss_pred             ccCh------------------------hccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          234 TIPP------------------------SIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       234 ~~p~------------------------~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .+|.                        .+..+++|+.|++++|.+++ ++...+..+++|+.|++++|++
T Consensus       215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l  284 (477)
T 2id5_A          215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQL  284 (477)
T ss_dssp             EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCC
T ss_pred             ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCCcc
Confidence            3333                        34444555555555555542 2222223455555555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=204.43  Aligned_cols=186  Identities=19%  Similarity=0.236  Sum_probs=151.7

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC--CCCCCCCCc
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA--STSNCSNLL  150 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~  150 (281)
                      ..++++.|++++|.+.+..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|.++ .+|.  .+..+++|+
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence            4578999999999999888888999999999999999999655556899999999999999998 5665  788999999


Q ss_pred             EEEccCC-CCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccC------------------------
Q 036746          151 VVSLALN-HLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRN------------------------  205 (281)
Q Consensus       151 ~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n------------------------  205 (281)
                      +|++++| .+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|                        
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence            9999998 466555678889999999999999888777777777665555555554                        


Q ss_pred             cCccc-------------------------------CCccCCCCCCCCEEEcccCccccccChh-ccCCCCCcEEEcccC
Q 036746          206 GFYGS-------------------------------IPDTFGGLKNLVNLSLVVNNLSGTIPPS-IFNISSIQTFDVGST  253 (281)
Q Consensus       206 ~~~~~-------------------------------~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n  253 (281)
                      .+++.                               +|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence            44331                               2233567889999999999999 56665 589999999999999


Q ss_pred             cccccCC
Q 036746          254 YIEGEMP  260 (281)
Q Consensus       254 ~i~~~~p  260 (281)
                      ++.+..|
T Consensus       312 ~~~~~~~  318 (353)
T 2z80_A          312 PWDCSCP  318 (353)
T ss_dssp             CBCCCHH
T ss_pred             CccCcCC
Confidence            9997654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.7e-26  Score=206.42  Aligned_cols=207  Identities=19%  Similarity=0.222  Sum_probs=177.7

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            57899999999999888889999999999999999999888899999999999999999999544456899999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            99999988888999999999999999999888888899999999999999999966667789999999999999999977


Q ss_pred             cChhccCCCCCcEEEcccCcccc-----------------------cCChhhhhCCCCCCEEeccCccCC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEG-----------------------EMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~-----------------------~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+..+..+++|+.|++++|...+                       .+|...+..+++|+.|++++|+++
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence            77677777766666666544333                       444444456777777777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.9e-26  Score=211.50  Aligned_cols=203  Identities=20%  Similarity=0.188  Sum_probs=123.3

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..|..++.+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            45667777777777666667777777777777777777666666677777777777777777333333577777777777


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCc---------------------------------------------
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS---------------------------------------------  189 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~---------------------------------------------  189 (281)
                      ++|.+.+..|..+..+++|++|++++|.+.+....                                             
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L  234 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  234 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence            77777766666677777777777777766532111                                             


Q ss_pred             --------------ccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746          190 --------------SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI  255 (281)
Q Consensus       190 --------------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i  255 (281)
                                    .+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+++ +|..+..+++|+.|++++|.+
T Consensus       235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence                          12233444455555555554445555555555555555555542 344444455555555555555


Q ss_pred             cccCChhhhhCCCCCCEEeccCccC
Q 036746          256 EGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       256 ~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      + .+|..+. .+++|+.|++++|++
T Consensus       314 ~-~i~~~~~-~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          314 L-HVERNQP-QFDRLENLYLDHNSI  336 (597)
T ss_dssp             C-CCGGGHH-HHTTCSEEECCSSCC
T ss_pred             C-ccCcccc-cCCCCCEEECCCCCC
Confidence            5 4554443 455555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=4.3e-26  Score=198.74  Aligned_cols=202  Identities=20%  Similarity=0.216  Sum_probs=126.9

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCC-CCCCCCCcEEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS-TSNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~  153 (281)
                      ++++.|+++++.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.++ .+|.. +.++++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            56777777777776666666777777777777777777666666777777777777777777 44443 46777777777


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCC---------------------------------------------
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP---------------------------------------------  188 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---------------------------------------------  188 (281)
                      +++|.+.+..+..+..+++|++|++++|.+.+...                                             
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  227 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  227 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence            77777775556666777777777777666543211                                             


Q ss_pred             --------------cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746          189 --------------SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       189 --------------~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  254 (281)
                                    ..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+
T Consensus       228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSC
T ss_pred             ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCc
Confidence                          11233445555666666665555556666666666666666665 234444555666666666666


Q ss_pred             ccccCChhhhhCCCCCCEEeccCccC
Q 036746          255 IEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       255 i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++ .+|..+. .+++|+.|++++|++
T Consensus       307 l~-~~~~~~~-~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          307 LL-HVERNQP-QFDRLENLYLDHNSI  330 (390)
T ss_dssp             CC-CCGGGHH-HHTTCSEEECCSSCC
T ss_pred             ce-ecCcccc-ccCcCCEEECCCCcc
Confidence            65 4555443 455666666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=4.3e-26  Score=198.73  Aligned_cols=135  Identities=21%  Similarity=0.206  Sum_probs=119.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            67889999999987555555789999999999999999777778999999999999999999777778999999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      ++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            9999994444457899999999999999987777889999999999999998864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=6e-26  Score=193.50  Aligned_cols=203  Identities=19%  Similarity=0.196  Sum_probs=159.1

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCch----------------------hccCCCCCCEEEc
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPP----------------------QIGHLRRLQILYL  130 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l  130 (281)
                      ..++++.|++++|.+.+..|..++.+++|++|++++|.+. .+|.                      .+.++++|++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  152 (330)
T 1xku_A           74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL  152 (330)
T ss_dssp             TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred             cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence            3477888899888888777888888888888888888766 3332                      3455666666666


Q ss_pred             cCccCcc--cCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc
Q 036746          131 QINSFDG--EIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       131 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      ++|.+..  ..+..+.++++|++|++++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus       153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence            6666542  44555666777777777777776 3454443  77888888888888777888999999999999999999


Q ss_pred             ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhh------CCCCCCEEeccCccCC
Q 036746          209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGT------TLPNLRIFSITGNQFT  281 (281)
Q Consensus       209 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~------~~~~L~~L~l~~N~lt  281 (281)
                      +..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .++...+.      ..+.++.|++++|+++
T Consensus       230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCccc
Confidence            877888999999999999999998 78889999999999999999999 45544432      2478999999999873

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=6.6e-26  Score=207.96  Aligned_cols=205  Identities=19%  Similarity=0.217  Sum_probs=162.2

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            56778888888876555555778888999999988888777778888888999999988888766677888889999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccC-----------------------
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI-----------------------  211 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-----------------------  211 (281)
                      ++|.+....+..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+++..                       
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~  210 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  210 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence            988888554455688888999999888888777777888888888888888776321                       


Q ss_pred             ------------------------------------CccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746          212 ------------------------------------PDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI  255 (281)
Q Consensus       212 ------------------------------------p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i  255 (281)
                                                          +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+
T Consensus       211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence                                                11245567888888888888877788888888899999999888


Q ss_pred             cccCChhhhhCCCCCCEEeccCccCC
Q 036746          256 EGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       256 ~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ++ +|..+. .+++|+.|++++|+++
T Consensus       291 ~~-l~~~~~-~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          291 VA-LNLYGQ-PIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             CE-EECSSS-CCTTCCEEECCSSCCC
T ss_pred             CC-CCcccc-cCCCCcEEECCCCCCC
Confidence            84 555553 6888999999888874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.2e-27  Score=200.96  Aligned_cols=201  Identities=21%  Similarity=0.277  Sum_probs=172.1

Q ss_pred             CCcEEEEEcCCCCceeecCccc--cCCCCCCEEeCCCCCCccCCchhccCC-----CCCCEEEccCccCcccCCCCCCCC
Q 036746           74 YQRVTILDLQNLKLVGTLSPHI--GNLSFLQKLDLRNNSFTNAIPPQIGHL-----RRLQILYLQINSFDGEIPASTSNC  146 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l  146 (281)
                      .++++.|++++|.+.+.+|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.+..|..+.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4789999999999998888876  8999999999999999976 7777766     899999999999997777899999


Q ss_pred             CCCcEEEccCCCCCCC--CCccc--CCCCCCcEEecccccccc--CCC-cccCCCCCCCEEEcccCcCcccCC-ccCCCC
Q 036746          147 SNLLVVSLALNHLVGK--IPSEF--GSLSKLQFLSTTANNLIG--NIP-SSLGNLSSLRGLSLSRNGFYGSIP-DTFGGL  218 (281)
Q Consensus       147 ~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l  218 (281)
                      ++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+.+  .++ ..+..+++|++|++++|.+++..| ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            9999999999998754  33444  889999999999999873  222 334577899999999999997765 456678


Q ss_pred             CCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          219 KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       219 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ++|+.|++++|.++ .+|..+.  ++|++|++++|++++ +|. + ..+++|++|++++|+++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~-~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-P-DELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-T-TTSCEEEEEECTTCTTT
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC-Chh-H-hhCCCCCEEeccCCCCC
Confidence            99999999999998 7787776  899999999999995 465 4 48999999999999985

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=7.1e-26  Score=207.99  Aligned_cols=204  Identities=23%  Similarity=0.227  Sum_probs=121.3

Q ss_pred             CcEEEEEcCCCCceeec--CccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCC-CCCCCCCcE
Q 036746           75 QRVTILDLQNLKLVGTL--SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS-TSNCSNLLV  151 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~  151 (281)
                      ++++.|++++|.+.+..  +..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|++
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  429 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV  429 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence            44555555555554433  444555555555555555555555555555566666666666555443332 555666666


Q ss_pred             EEccCCCCCCCCCcccCCCCCCcEEeccccccccC---CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEccc
Q 036746          152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN---IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV  228 (281)
Q Consensus       152 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  228 (281)
                      |++++|.+.+..|..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus       430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  509 (606)
T 3t6q_A          430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH  509 (606)
T ss_dssp             EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence            66666666655555566666666666666665541   223455666666666666666655666666666777777777


Q ss_pred             CccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          229 NNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      |++++..|..+..+++| .|++++|++++..|..+ ..+++|+.|++++|++
T Consensus       510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL-PILSQQRTINLRQNPL  559 (606)
T ss_dssp             SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH-HHHHTSSEEECTTCCE
T ss_pred             CccCcCChhHhCccccc-EEECcCCcccccCHhhc-ccCCCCCEEeCCCCCc
Confidence            77666666666666666 67777777664333333 3566777777777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=1.8e-25  Score=183.33  Aligned_cols=192  Identities=22%  Similarity=0.240  Sum_probs=167.5

Q ss_pred             CCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC
Q 036746           61 HFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP  140 (281)
Q Consensus        61 ~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  140 (281)
                      .++.|.|..|.   ...+.++++++++. .+|..+.  +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus         3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            46678899996   34567899999886 5666555  689999999999998888889999999999999999997777


Q ss_pred             CCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCC
Q 036746          141 ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN  220 (281)
Q Consensus       141 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~  220 (281)
                      ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            78899999999999999999777778899999999999999998666666889999999999999999666678999999


Q ss_pred             CCEEEcccCccccccChhccCCCCCcEEEcccCccccc
Q 036746          221 LVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGE  258 (281)
Q Consensus       221 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~  258 (281)
                      |+.|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999999977677888999999999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=4.7e-26  Score=209.22  Aligned_cols=206  Identities=22%  Similarity=0.195  Sum_probs=174.8

Q ss_pred             CCCcEEEEEcCCCCceee--cCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-CCCCCCCCC
Q 036746           73 RYQRVTILDLQNLKLVGT--LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP-ASTSNCSNL  149 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  149 (281)
                      ..++++.|++++|.+.+.  .|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            346788888888887765  36778888888999998888874 55778888999999999999886666 578889999


Q ss_pred             cEEEccCCCCCCCCCcccCCCCCCcEEeccccccccC-CCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEccc
Q 036746          150 LVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV  228 (281)
Q Consensus       150 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  228 (281)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            9999999999888888889999999999999988863 678888999999999999999888888899999999999999


Q ss_pred             CccccccChhccCCCCCcEEEcccCcccccCChhhhhCCC-CCCEEeccCccCC
Q 036746          229 NNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLP-NLRIFSITGNQFT  281 (281)
Q Consensus       229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~-~L~~L~l~~N~lt  281 (281)
                      |++++..|..+..+++|+.|++++|+++ .+|..+. .++ +|++|++++|+++
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~-~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ-HFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG-GSCTTCCEEECCSCCCC
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh-hhcccCcEEEccCCCcc
Confidence            9998877888999999999999999988 7777755 566 5999999999874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=4e-27  Score=217.40  Aligned_cols=204  Identities=21%  Similarity=0.352  Sum_probs=174.6

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC-Ccc-CCchhccCC------CCCCEEEccCccCcccCCC--C
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS-FTN-AIPPQIGHL------RRLQILYLQINSFDGEIPA--S  142 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~  142 (281)
                      ..++++.|++++|.+.+.+|..++++++|++|++++|. +.+ .+|..++.+      ++|++|++++|.++ .+|.  .
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            45789999999999999999999999999999999998 887 788877776      89999999999998 8888  8


Q ss_pred             CCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCC-CCEEEcccCcCcccCCccCCCCC--
Q 036746          143 TSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS-LRGLSLSRNGFYGSIPDTFGGLK--  219 (281)
Q Consensus       143 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~p~~~~~l~--  219 (281)
                      +.++++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+  
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence            9999999999999999988888 8888889999999998887 77877888888 999999998888 7787776654  


Q ss_pred             CCCEEEcccCccccccChhcc-------CCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          220 NLVNLSLVVNNLSGTIPPSIF-------NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       220 ~L~~L~l~~n~l~~~~p~~l~-------~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +|+.|++++|.+++.+|..+.       .+++|+.|++++|.++ .+|..++..+++|++|++++|+++
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence            788888888888877777777       6778888888888888 677777767888888888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=2.3e-25  Score=204.67  Aligned_cols=205  Identities=18%  Similarity=0.182  Sum_probs=114.1

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCch-hccCCCCCCEEEccCccCcccC--CCCCCCCCCCcE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPP-QIGHLRRLQILYLQINSFDGEI--PASTSNCSNLLV  151 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~  151 (281)
                      ++++.|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++..  +..+..+++|++
T Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  380 (606)
T 3t6q_A          301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS  380 (606)
T ss_dssp             TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred             ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE
Confidence            4455555555555544444455555555555555554433332 2455555555555555555332  445555666666


Q ss_pred             EEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCc-ccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCc
Q 036746          152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       152 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~  230 (281)
                      |++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus       381 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             EECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             EECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence            66666665555555556666666666666665544332 25556666666666666665555566666666666666666


Q ss_pred             cccc---cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          231 LSGT---IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       231 l~~~---~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +++.   .+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|++
T Consensus       461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-SLKMMNHVDLSHNRL  512 (606)
T ss_dssp             CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCC
T ss_pred             CCccccccchhhccCCCccEEECCCCccCccChhhhc-cccCCCEEECCCCcc
Confidence            6541   123455566666666666666644444443 566666666666655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=2.5e-25  Score=184.72  Aligned_cols=194  Identities=22%  Similarity=0.221  Sum_probs=150.5

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.|++.++.+.. + +.+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            678888888887653 2 347788888888888888874 3 46778888888888888888655566788888888888


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence            88888866666678888888888888888766666677888888888888888866666778888888888888888876


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      .+..+..+++|+.|++++|++.+.        +++|+.|+++.|++
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKH  234 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHT
T ss_pred             CHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhC
Confidence            666678888888888888887743        45566666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1e-24  Score=180.79  Aligned_cols=184  Identities=24%  Similarity=0.242  Sum_probs=164.2

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ..++.|+++++.+.+..+..+..+++|++|++++|.+....+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            56899999999998777778999999999999999999666666789999999999999999655567889999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            99999977778899999999999999999866666689999999999999999977777899999999999999999966


Q ss_pred             cChhccCCCCCcEEEcccCccccc
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGE  258 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~  258 (281)
                      .+..+..+++|+.|++++|++...
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CHHHhccccCCCEEEecCCCeeCC
Confidence            666788899999999999998743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=4.9e-26  Score=206.72  Aligned_cols=205  Identities=18%  Similarity=0.169  Sum_probs=171.6

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..|..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            57999999999999888889999999999999999999888888999999999999999999665566999999999999


Q ss_pred             cCCCCCC-CCCcccCCCCCCcEEeccccccccCCC-cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          155 ALNHLVG-KIPSEFGSLSKLQFLSTTANNLIGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       155 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      ++|.+.+ ..|..++.+++|++|++++|...+.+| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            9999986 356789999999999999998544554 67899999999999999999889999999999999999998886


Q ss_pred             cccChh-ccCCCCCcEEEcccCcccccC--ChhhhhCCCCCCEEeccCccC
Q 036746          233 GTIPPS-IFNISSIQTFDVGSTYIEGEM--PLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       233 ~~~p~~-l~~l~~L~~L~l~~n~i~~~~--p~~~~~~~~~L~~L~l~~N~l  280 (281)
                       .+|.. +..+++|+.|++++|.+++..  |..+...+++|+.|++++|++
T Consensus       186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  235 (549)
T 2z81_A          186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL  235 (549)
T ss_dssp             -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred             -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence             44443 356888999999999888531  223333566777777776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=1.9e-25  Score=205.13  Aligned_cols=203  Identities=20%  Similarity=0.130  Sum_probs=175.1

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccC--CchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNA--IPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (281)
                      ++++.|++++|...+..  .+..+++|++|++++|.+.+.  .+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus       328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L  404 (606)
T 3vq2_A          328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHL  404 (606)
T ss_dssp             SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEE
T ss_pred             CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCee
Confidence            45555555555433322  456788888888888888754  3778889999999999999988 577889999999999


Q ss_pred             EccCCCCCCCCC-cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCccc-CCccCCCCCCCCEEEcccCc
Q 036746          153 SLALNHLVGKIP-SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       153 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~  230 (281)
                      ++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.
T Consensus       405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  484 (606)
T 3vq2_A          405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ  484 (606)
T ss_dssp             ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence            999999987766 6789999999999999999988899999999999999999999874 78899999999999999999


Q ss_pred             cccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       231 l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +++..|..+..+++|++|++++|++++..|..+. .+++|+.|++++|+++
T Consensus       485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT-TCTTCCEEECTTSCCC
T ss_pred             CCccChhhhcccccCCEEECCCCcCCCcCHHHcc-CCCcCCEEECCCCcCc
Confidence            9988888999999999999999999977677665 7999999999999985

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=1.1e-24  Score=202.76  Aligned_cols=204  Identities=22%  Similarity=0.238  Sum_probs=118.4

Q ss_pred             cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCc-hhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-PQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .++.|++++|.+.+..|..+..+++|++|++++|.+.+.+| ..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            56667777777777777777778888888888887765544 56777777777777777766555555555555555555


Q ss_pred             cCCCCC--CCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC--------ccCCCCCCCCEE
Q 036746          155 ALNHLV--GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP--------DTFGGLKNLVNL  224 (281)
Q Consensus       155 ~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p--------~~~~~l~~L~~L  224 (281)
                      ++|.+.  +..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+        ..+.++++|+.|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence            555554  3445555555556666665555554444445555555555555555543211        124455555555


Q ss_pred             EcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          225 SLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       225 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++++|+++...+..+.++++|+.|++++|+++ .+|...+..+++|+.|++++|++
T Consensus       542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcC
Confidence            55555555222223455555555555555555 34444433455555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=5.1e-25  Score=198.84  Aligned_cols=89  Identities=19%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc--ccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746          192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG--TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       192 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~  269 (281)
                      ..+++|++|++++|.+++.+|..+..+++|++|++++|++++  .+|..+..+++|++|++++|.+++.+|...+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            456677777888887777677777778888888888888775  455667777888888888888776577654456677


Q ss_pred             CCEEeccCccC
Q 036746          270 LRIFSITGNQF  280 (281)
Q Consensus       270 L~~L~l~~N~l  280 (281)
                      |+.|++++|++
T Consensus       401 L~~L~Ls~N~l  411 (520)
T 2z7x_B          401 LLSLNMSSNIL  411 (520)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECcCCCC
Confidence            77777777765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=1.9e-24  Score=177.32  Aligned_cols=179  Identities=22%  Similarity=0.268  Sum_probs=158.8

Q ss_pred             CCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEec
Q 036746           99 SFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLST  178 (281)
Q Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  178 (281)
                      ...++++++++.+. .+|..+.  ++++.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45688999999998 6776654  68999999999999777778999999999999999999888888999999999999


Q ss_pred             cccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccccc
Q 036746          179 TANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGE  258 (281)
Q Consensus       179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~  258 (281)
                      ++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  169 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-S  169 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-C
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-c
Confidence            999999777778899999999999999999666777899999999999999999666668999999999999999999 5


Q ss_pred             CChhhhhCCCCCCEEeccCccCC
Q 036746          259 MPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       259 ~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ++...+..+++|+.|++++|+++
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCHHHHhCCCCCCEEEeeCCcee
Confidence            55555558999999999999974

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=8e-25  Score=199.41  Aligned_cols=89  Identities=22%  Similarity=0.232  Sum_probs=62.8

Q ss_pred             CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc--ccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746          192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG--TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       192 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~  269 (281)
                      ..+++|++|++++|.+++.+|..+.++++|++|++++|++++  .+|..+..+++|+.|++++|.+++.+|...+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            455677777777777776677777777777888887777774  234556777778888888887776566655556666


Q ss_pred             CCEEeccCccC
Q 036746          270 LRIFSITGNQF  280 (281)
Q Consensus       270 L~~L~l~~N~l  280 (281)
                      |++|++++|++
T Consensus       430 L~~L~l~~n~l  440 (562)
T 3a79_B          430 ILVLNLSSNML  440 (562)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECCCCCC
Confidence            77777776665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.93  E-value=9e-26  Score=190.82  Aligned_cols=200  Identities=20%  Similarity=0.236  Sum_probs=169.4

Q ss_pred             CcEEEEEcCCCCceeecCccc--cCCCCCCEEeCCCCCCccCCc----hhccCCCCCCEEEccCccCcccCCCCCCCCCC
Q 036746           75 QRVTILDLQNLKLVGTLSPHI--GNLSFLQKLDLRNNSFTNAIP----PQIGHLRRLQILYLQINSFDGEIPASTSNCSN  148 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  148 (281)
                      .+++.|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            459999999999999999888  899999999999999986544    34457999999999999999777789999999


Q ss_pred             CcEEEccCCCCCCC--C--CcccCCCCCCcEEeccccccccCCCc----ccCCCCCCCEEEcccCcCcccCCccCCCC--
Q 036746          149 LLVVSLALNHLVGK--I--PSEFGSLSKLQFLSTTANNLIGNIPS----SLGNLSSLRGLSLSRNGFYGSIPDTFGGL--  218 (281)
Q Consensus       149 L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~p~~~~~l--  218 (281)
                      |++|++++|++.+.  +  +..+..+++|++|++++|.+. .++.    .+..+++|++|++++|.+.+..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999997642  2  233478899999999999986 3332    24678999999999999998778777776  


Q ss_pred             -CCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          219 -KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       219 -~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       ++|++|++++|+++ .+|..+.  ++|+.|++++|++++ +|. + ..+++|+.|++++|+|+
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~-~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-P-DELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-T-TSCCCCSCEECSSTTTS
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-h-hhCCCccEEECcCCCCC
Confidence             69999999999999 6787764  799999999999994 444 2 47899999999999985

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=3.1e-25  Score=200.22  Aligned_cols=65  Identities=12%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             CCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc--cCChhhhhCCCCCCEEeccCccCC
Q 036746          216 GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG--EMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       216 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~--~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ..+++|++|++++|.+++.+|..+..+++|+.|++++|++++  .+|..+. .+++|++|++++|+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~  387 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVS  387 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCB
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCC
Confidence            567788888888888887778888888888888888888885  3444444 7888888888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=5.3e-25  Score=209.39  Aligned_cols=110  Identities=21%  Similarity=0.244  Sum_probs=54.8

Q ss_pred             CcEEEEEcCCCCceeec-CccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCC--CCCCCCCcE
Q 036746           75 QRVTILDLQNLKLVGTL-SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAS--TSNCSNLLV  151 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~  151 (281)
                      .+++.|++++|...+.+ |..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..  +.++++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            44444444444333333 344555555555555555555444555555555555555555555433333  555555555


Q ss_pred             EEccCCCCCCCCC-cccCCCCCCcEEeccccccc
Q 036746          152 VSLALNHLVGKIP-SEFGSLSKLQFLSTTANNLI  184 (281)
Q Consensus       152 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~  184 (281)
                      |++++|.+.+..+ ..++++++|++|++++|.+.
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            5555555543322 34555555555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=1.2e-24  Score=185.55  Aligned_cols=204  Identities=22%  Similarity=0.189  Sum_probs=155.4

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (281)
                      ..++++.|++++|.+.+..|..++++++|++|++++|.+. .+|..+.  ++|++|++++|.+++..+..+..+++|++|
T Consensus        76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI  152 (332)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred             CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence            4578999999999998888888999999999999999887 4555443  678888888888774444457777777777


Q ss_pred             EccCCCCCC--CCCcccCCC--------------------CCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCccc
Q 036746          153 SLALNHLVG--KIPSEFGSL--------------------SKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS  210 (281)
Q Consensus       153 ~l~~n~~~~--~~~~~l~~l--------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  210 (281)
                      ++++|.+..  ..+..+..+                    ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus       153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence            777777642  333333322                    4677777777777766667788888999999999998877


Q ss_pred             CCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhC------CCCCCEEeccCccCC
Q 036746          211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTT------LPNLRIFSITGNQFT  281 (281)
Q Consensus       211 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~------~~~L~~L~l~~N~lt  281 (281)
                      .+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .++...+..      .++|+.|++++|+++
T Consensus       233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCccc
Confidence            7778888899999999999988 77888888899999999999888 444433322      466888888888763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=8e-25  Score=178.16  Aligned_cols=198  Identities=16%  Similarity=0.136  Sum_probs=170.4

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC-CccCCchhccCCCCCCEEEccC-ccCcccCCCCCCCCCCCcEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS-FTNAIPPQIGHLRRLQILYLQI-NSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L  152 (281)
                      .+++.|++++|++.+..+..+.++++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            579999999999988777789999999999999997 8766666899999999999998 99996666788999999999


Q ss_pred             EccCCCCCCCCCcccCCCCCCc---EEecccc-ccccCCCcccCCCCCCC-EEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746          153 SLALNHLVGKIPSEFGSLSKLQ---FLSTTAN-NLIGNIPSSLGNLSSLR-GLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       153 ~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  227 (281)
                      ++++|.+.+ +|. +..+++|+   +|++++| .+.+..+..+..+++|+ +|++++|.++ .+|......++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence            999999985 666 88888888   9999999 88766666789999999 9999999998 555444344899999999


Q ss_pred             cCc-cccccChhccCC-CCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746          228 VNN-LSGTIPPSIFNI-SSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       228 ~n~-l~~~~p~~l~~l-~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      +|+ +++..+..+..+ ++|+.|++++|+++ .+|..   .+++|+.|+++++.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence            995 986666778888 99999999999998 67764   57899999998864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.5e-27  Score=200.59  Aligned_cols=200  Identities=24%  Similarity=0.289  Sum_probs=151.9

Q ss_pred             EEEEEcCCCCc-eeecCcccc-------CCCCCCEEeCCCCCCccCCchhc--cCCCCCCEEEccCccCcccCCCCCCCC
Q 036746           77 VTILDLQNLKL-VGTLSPHIG-------NLSFLQKLDLRNNSFTNAIPPQI--GHLRRLQILYLQINSFDGEIPASTSNC  146 (281)
Q Consensus        77 l~~L~l~~~~l-~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l  146 (281)
                      ++.|+++++.+ .+.+|..+.       ++++|++|++++|.+.+..|..+  ..+++|++|++++|.+++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            45556666666 334555444       68888999999988887777765  7888899999999888855 7666665


Q ss_pred             -----CCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccC--CCccc--CCCCCCCEEEcccCcCcc--cCC-cc
Q 036746          147 -----SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN--IPSSL--GNLSSLRGLSLSRNGFYG--SIP-DT  214 (281)
Q Consensus       147 -----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~p-~~  214 (281)
                           ++|++|++++|.+.+..+..++.+++|++|++++|++.+.  .+..+  ..+++|++|++++|.+++  .++ ..
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                 8889999999988877778888888999999988887654  23333  778889999999988873  222 33


Q ss_pred             CCCCCCCCEEEcccCccccccC-hhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          215 FGGLKNLVNLSLVVNNLSGTIP-PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       215 ~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++ .+|..+.   ++|++|++++|+|+
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD  287 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCC
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCC
Confidence            4567889999999998886654 45556788999999999888 7777654   78899999998875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=2.5e-24  Score=178.67  Aligned_cols=195  Identities=19%  Similarity=0.240  Sum_probs=165.8

Q ss_pred             EEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCC
Q 036746           80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHL  159 (281)
Q Consensus        80 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  159 (281)
                      +++..+.+.+..  ....+++|+.|++++|.+. .+ ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+
T Consensus        24 l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l   97 (272)
T 3rfs_A           24 ANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQL   97 (272)
T ss_dssp             HHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCC
T ss_pred             HHhcCccccccc--ccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCcc
Confidence            344444443332  3457889999999999987 33 358899999999999999984 3 4788999999999999999


Q ss_pred             CCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhc
Q 036746          160 VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSI  239 (281)
Q Consensus       160 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l  239 (281)
                      .+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus        98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  177 (272)
T 3rfs_A           98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF  177 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh
Confidence            97777778999999999999999997777778999999999999999997777778999999999999999997777778


Q ss_pred             cCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          240 FNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       240 ~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ..+++|++|++++|.+++ ++...+..+++|+.|++++|+++
T Consensus       178 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          178 DKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCcc
Confidence            899999999999999995 55555558999999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.5e-24  Score=180.26  Aligned_cols=197  Identities=19%  Similarity=0.209  Sum_probs=168.2

Q ss_pred             EEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCC
Q 036746           80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHL  159 (281)
Q Consensus        80 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  159 (281)
                      .+..+.++. .+|..+.  ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            444454443 4565553  5799999999999977777899999999999999999976677899999999999999999


Q ss_pred             CCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCccc-CCccCCCCCCCCEEEcccCccccccChh
Q 036746          160 VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLSGTIPPS  238 (281)
Q Consensus       160 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~  238 (281)
                      .+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            977778899999999999999999876666799999999999999999863 6899999999999999999999776677


Q ss_pred             ccCCCCCc----EEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          239 IFNISSIQ----TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       239 l~~l~~L~----~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +..+++|+    +|++++|.++ .++...+ ...+|+.|++++|+++
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~  213 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLK  213 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCS
T ss_pred             hhhhhhccccceeeecCCCccc-ccCcccc-CCCcccEEECCCCcee
Confidence            77666666    8999999999 5666665 4569999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=4.2e-24  Score=198.80  Aligned_cols=207  Identities=22%  Similarity=0.238  Sum_probs=181.3

Q ss_pred             CCcEEEEEcCCCCceeecC-ccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCc--ccCCCCCCCCCCCc
Q 036746           74 YQRVTILDLQNLKLVGTLS-PHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD--GEIPASTSNCSNLL  150 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~  150 (281)
                      .++++.|++++|.+.+.+| ..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.  +..|..+..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            4789999999999988776 67899999999999999999888889999999999999999987  57888999999999


Q ss_pred             EEEccCCCCCCCCCcccCCCCCCcEEeccccccccCC--------CcccCCCCCCCEEEcccCcCcccCCccCCCCCCCC
Q 036746          151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNI--------PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV  222 (281)
Q Consensus       151 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--------~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  222 (281)
                      +|++++|.+++..+..+..+++|++|++++|.+.+..        +..+..+++|++|++++|.++...+..+.++++|+
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            9999999999777778999999999999999987532        12378889999999999999944446789999999


Q ss_pred             EEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhh-CCCCCCEEeccCccCC
Q 036746          223 NLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGT-TLPNLRIFSITGNQFT  281 (281)
Q Consensus       223 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~-~~~~L~~L~l~~N~lt  281 (281)
                      .|++++|++++..+..+..+++|+.|++++|++++ ++...+. .+++|+.|++++|++.
T Consensus       564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB-CCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc-cChhHhcccccccCEEEccCCCcc
Confidence            99999999996666667899999999999999995 5555443 5899999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=3.7e-25  Score=209.05  Aligned_cols=203  Identities=21%  Similarity=0.300  Sum_probs=164.7

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCC-Ccc-CCchhccCC-------CCCCEEEccCccCcccCCC--
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNS-FTN-AIPPQIGHL-------RRLQILYLQINSFDGEIPA--  141 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~~~--  141 (281)
                      ..++++.|++++|.+.+.+|..++++++|++|++++|. +.+ .+|..+..+       ++|++|++++|.++ .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            35789999999999999999999999999999999998 887 677766554       49999999999999 8888  


Q ss_pred             CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCC-CCEEEcccCcCcccCCccCCCCCC
Q 036746          142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS-LRGLSLSRNGFYGSIPDTFGGLKN  220 (281)
Q Consensus       142 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~p~~~~~l~~  220 (281)
                      .+.++++|++|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..++.
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~  643 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV  643 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence            8999999999999999998 778 8899999999999999988 78888888888 999999999988 77877766544


Q ss_pred             --CCEEEcccCccccccChhc---c--CCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          221 --LVNLSLVVNNLSGTIPPSI---F--NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       221 --L~~L~l~~n~l~~~~p~~l---~--~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                        |+.|++++|.+++.+|...   .  ..++|+.|++++|.++ .+|..++..+++|+.|++++|+|+
T Consensus       644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence              8888888888876554322   1  2346777777777777 667666656777777777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.6e-25  Score=198.19  Aligned_cols=199  Identities=22%  Similarity=0.216  Sum_probs=143.2

Q ss_pred             cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC--------------
Q 036746           76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA--------------  141 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------  141 (281)
                      +++.|++++|.+.+..|..+..+++|++|++++|.+.+..|  +..+++|++|++++|.+++..+.              
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            56666666666665555556666666666666666654333  55566666666665555421110              


Q ss_pred             --CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccC-CCCCCCEEEcccCcCcccCCccCCCC
Q 036746          142 --STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG-NLSSLRGLSLSRNGFYGSIPDTFGGL  218 (281)
Q Consensus       142 --~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l  218 (281)
                        ....+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++. | ....+
T Consensus       113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l  190 (487)
T 3oja_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVF  190 (487)
T ss_dssp             CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCC
T ss_pred             CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccC
Confidence              012356788888888888877777888888999999999988877776665 688899999999988855 3 23358


Q ss_pred             CCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          219 KNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       219 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ++|+.|++++|.+++ +|+.+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|+++
T Consensus       191 ~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCBC
T ss_pred             CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhc-cCCCCCEEEcCCCCCc
Confidence            899999999999985 5556888899999999999998 4777665 7889999999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=9.3e-25  Score=199.02  Aligned_cols=203  Identities=23%  Similarity=0.237  Sum_probs=173.6

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCC--chhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI--PPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  152 (281)
                      ++++.++++++.+.+..+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+ ++..+..+++|++|
T Consensus       325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L  401 (570)
T 2z63_A          325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL  401 (570)
T ss_dssp             SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred             cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEE
Confidence            4566666666665544443  67889999999999888543  6778899999999999999984 45558899999999


Q ss_pred             EccCCCCCCCCC-cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc-ccCCccCCCCCCCCEEEcccCc
Q 036746          153 SLALNHLVGKIP-SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       153 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~  230 (281)
                      ++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.
T Consensus       402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            999999986655 56889999999999999999888888999999999999999997 5789999999999999999999


Q ss_pred             cccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       231 l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +++..|..+..+++|++|++++|++++. |...+..+++|+.|++++|+++
T Consensus       482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          482 LEQLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccCChhhhhcccCCCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCccc
Confidence            9988899999999999999999999954 4444458999999999999975

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=4e-25  Score=187.47  Aligned_cols=193  Identities=22%  Similarity=0.227  Sum_probs=145.5

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      .++++.|++++|.+.+..+  +..+++|++|++++|.+.+     +...++|++|++++|.+++..+.   .+++|++|+
T Consensus        57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~  126 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCS---RGQGKKNIY  126 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEE
T ss_pred             CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEE
Confidence            3556666666666654443  5566666666666666552     11235666666666666643332   357899999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCccc-CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL-GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.++
T Consensus       127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC
Confidence            99999987667788889999999999999987666665 4688999999999999854 32 335899999999999998


Q ss_pred             cccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          233 GTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       233 ~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       .+|..+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|+++
T Consensus       205 -~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             -EECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCCB
T ss_pred             -cchhhhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCCcc
Confidence             45666889999999999999999 6787765 7899999999999874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=3.3e-24  Score=203.96  Aligned_cols=207  Identities=20%  Similarity=0.224  Sum_probs=136.1

Q ss_pred             CCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchh--ccCCCCCCEEEccCccCcccCC-CCCCCCCCC
Q 036746           73 RYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ--IGHLRRLQILYLQINSFDGEIP-ASTSNCSNL  149 (281)
Q Consensus        73 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  149 (281)
                      ..++++.|++++|.+.+..|..++++++|++|++++|.+.+..+..  |.++++|++|++++|.+++..+ ..+.++++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            3478899999999998888888999999999999999888755554  7888999999999998885544 467888888


Q ss_pred             cEEEccCCCCCCCCCcccCC--------------------------CCC------CcEEeccccc---------------
Q 036746          150 LVVSLALNHLVGKIPSEFGS--------------------------LSK------LQFLSTTANN---------------  182 (281)
Q Consensus       150 ~~L~l~~n~~~~~~~~~l~~--------------------------l~~------L~~L~l~~n~---------------  182 (281)
                      ++|++++|.+.+..+..+..                          +++      |+.|++++|.               
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            88888888776544433221                          111      4455554443               


Q ss_pred             -----------------------------------------------cccCCCcccCCCCCCCEEEcccCcCcccCCccC
Q 036746          183 -----------------------------------------------LIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF  215 (281)
Q Consensus       183 -----------------------------------------------~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  215 (281)
                                                                     +.+..+..+..+++|++|++++|.+.+..|..+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                                           333333444455555666666666655555556


Q ss_pred             CCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          216 GGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       216 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+. .++...+..+++|+.|++++|++
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCS
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCC
Confidence            66666666666666665555556666666666666666665 33333333566666666666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=7.8e-24  Score=178.75  Aligned_cols=190  Identities=20%  Similarity=0.329  Sum_probs=160.8

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ + ..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEEC
Confidence            678999999998864 44 58899999999999999984 444 8899999999999999984 4 36889999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++.
T Consensus       115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC
Confidence            9999985 44 389999999999999998754 33 8889999999999999985 443 88999999999999999854


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       +. +..+++|++|++++|++++ ++. + ..+++|+.|++++|+++
T Consensus       189 -~~-l~~l~~L~~L~L~~N~l~~-~~~-l-~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          189 -SP-LASLPNLIEVHLKNNQISD-VSP-L-ANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             -GG-GGGCTTCCEEECTTSCCCB-CGG-G-TTCTTCCEEEEEEEEEE
T ss_pred             -hh-hcCCCCCCEEEccCCccCc-ccc-c-cCCCCCCEEEccCCeee
Confidence             33 7889999999999999995 442 4 47999999999999874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.91  E-value=4.4e-24  Score=193.79  Aligned_cols=205  Identities=21%  Similarity=0.273  Sum_probs=179.5

Q ss_pred             CCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC
Q 036746           62 FCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA  141 (281)
Q Consensus        62 ~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  141 (281)
                      .|.|.++ |+          .++++++ .+|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.
T Consensus         3 ~C~~~~~-c~----------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CD----------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EE----------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EE----------CCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4888776 64          3455554 5666554  7999999999999988888999999999999999999987788


Q ss_pred             CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccccc-CCCcccCCCCCCCEEEcccCcCcccCC-ccCCCCC
Q 036746          142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLK  219 (281)
Q Consensus       142 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~  219 (281)
                      .|.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+.+| ..+.+++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            99999999999999999997777779999999999999999975 356789999999999999999555555 6899999


Q ss_pred             CCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          220 NLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       220 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+...+++|++|++++|+++
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccc
Confidence            9999999999999889999999999999999999987 677777668999999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.6e-23  Score=174.05  Aligned_cols=179  Identities=25%  Similarity=0.229  Sum_probs=162.3

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..+..+..+++|++|++++|.+.+. +. ...+++|++|++++|.++ .+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            6799999999999988888999999999999999999853 33 278999999999999998 88999999999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+.++++|+.|++++|.++ .
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence            999999777788999999999999999998766677889999999999999999655667788999999999999998 7


Q ss_pred             cChhccCCCCCcEEEcccCcccc
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                      +|..+....+|+.+++++|++..
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cChhhcccccCCeEEeCCCCccC
Confidence            88888889999999999998863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=5.9e-24  Score=193.69  Aligned_cols=160  Identities=23%  Similarity=0.169  Sum_probs=129.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            56888999999888777778888999999999999888777778888899999999999888666678888899999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEecccccccc-CCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCC----CEEEcccC
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL----VNLSLVVN  229 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L----~~L~l~~n  229 (281)
                      ++|.+....+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..|..++.+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9988885555568888899999999888875 468888888889999998888876666666666666    66676666


Q ss_pred             ccccc
Q 036746          230 NLSGT  234 (281)
Q Consensus       230 ~l~~~  234 (281)
                      .+++.
T Consensus       188 ~l~~~  192 (570)
T 2z63_A          188 PMNFI  192 (570)
T ss_dssp             CCCEE
T ss_pred             Cceec
Confidence            65543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.91  E-value=1e-23  Score=191.02  Aligned_cols=195  Identities=19%  Similarity=0.290  Sum_probs=163.5

Q ss_pred             CCCCCCCC-----cccce-EecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEE
Q 036746           56 WNDSIHFC-----QWYGV-TCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILY  129 (281)
Q Consensus        56 w~~~~~~c-----~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  129 (281)
                      |.....+|     .|.++ .|..  .+++.|+++++++.+ +|..+.  ++|++|++++|.+. .+|   ..+++|++|+
T Consensus        36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~  106 (571)
T 3cvr_A           36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD  106 (571)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred             HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence            43344556     68887 6754  589999999999986 777663  89999999999998 676   4689999999


Q ss_pred             ccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcc
Q 036746          130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYG  209 (281)
Q Consensus       130 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  209 (281)
                      +++|.+++ +|. +.+  +|++|++++|.+++ +|.   .+++|+.|++++|.+.+ +|.   .+++|++|++++|.+++
T Consensus       107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            99999995 777 665  99999999999996 666   68999999999999985 665   57899999999999985


Q ss_pred             cCCccCCCCCCCCEEEcccCccccccChhccCCCCC-------cEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSI-------QTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       210 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|++++|.|+ .+|..++ .+++|+.|++++|+|+
T Consensus       175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIILEDNPLS  243 (571)
T ss_dssp             -CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEECCSSSCC
T ss_pred             -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEeeCCcCC
Confidence             777 65  89999999999998 6777 554  77       99999999999 7999898 4999999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=8e-24  Score=192.83  Aligned_cols=158  Identities=20%  Similarity=0.236  Sum_probs=132.8

Q ss_pred             cCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCC--CCcccCCCCCCcEEeccccccccCCCc-ccCCCCC
Q 036746          120 GHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGK--IPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSS  196 (281)
Q Consensus       120 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~  196 (281)
                      ..+++|++|++++|.+++..|..+.++++|++|++++|.+.+.  +|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            5678899999999999877888888899999999999988852  345688889999999999988875554 4778889


Q ss_pred             CCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEecc
Q 036746          197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT  276 (281)
Q Consensus       197 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~  276 (281)
                      |++|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|...+..+++|+.|+++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence            99999999999877776654  78999999999998 77887779999999999999999 7887755589999999999


Q ss_pred             CccCC
Q 036746          277 GNQFT  281 (281)
Q Consensus       277 ~N~lt  281 (281)
                      +|+++
T Consensus       506 ~N~~~  510 (562)
T 3a79_B          506 DNPWD  510 (562)
T ss_dssp             SCCBC
T ss_pred             CCCcC
Confidence            99874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=6.7e-24  Score=172.69  Aligned_cols=185  Identities=17%  Similarity=0.208  Sum_probs=158.6

Q ss_pred             ecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCcc-CcccCCCCCCCCCCCcEEEccC-CCCCCCCCccc
Q 036746           90 TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS-FDGEIPASTSNCSNLLVVSLAL-NHLVGKIPSEF  167 (281)
Q Consensus        90 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l  167 (281)
                      .+|. +.  +++++|++++|.+.+..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+....+..|
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            4555 43  489999999999997777789999999999999997 8855556889999999999998 99996666788


Q ss_pred             CCCCCCcEEeccccccccCCCcccCCCCCCC---EEEcccC-cCcccCCccCCCCCCCC-EEEcccCccccccChhccCC
Q 036746          168 GSLSKLQFLSTTANNLIGNIPSSLGNLSSLR---GLSLSRN-GFYGSIPDTFGGLKNLV-NLSLVVNNLSGTIPPSIFNI  242 (281)
Q Consensus       168 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~l~~l  242 (281)
                      ..+++|++|++++|.+.+ +|. +..+++|+   +|++++| .+.+..+..+.++++|+ +|++++|.++ .+|......
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~  178 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG  178 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence            999999999999999985 676 88888888   9999999 89866677899999999 9999999998 566554444


Q ss_pred             CCCcEEEcccCc-ccccCChhhhhCC-CCCCEEeccCccCC
Q 036746          243 SSIQTFDVGSTY-IEGEMPLDLGTTL-PNLRIFSITGNQFT  281 (281)
Q Consensus       243 ~~L~~L~l~~n~-i~~~~p~~~~~~~-~~L~~L~l~~N~lt  281 (281)
                      ++|+.|++++|+ ++ .+|...+..+ ++|+.|++++|+++
T Consensus       179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccc
Confidence            899999999995 88 6666666688 99999999999885

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=3.6e-23  Score=177.37  Aligned_cols=174  Identities=22%  Similarity=0.318  Sum_probs=115.0

Q ss_pred             ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  174 (281)
                      +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+... +. +..+++|+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~  246 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLT  246 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred             hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCC
Confidence            3344444444444444442 221 44445555555555554422 11 55667777777777777643 33 77778888


Q ss_pred             EEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746          175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  254 (281)
                      +|++++|.+.+ + ..+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+
T Consensus       247 ~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          247 WLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             EEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             EEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            88888887764 2 457777888888888888774 3 356778888888888888887777778888888888888888


Q ss_pred             ccccCChhhhhCCCCCCEEeccCccCC
Q 036746          255 IEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       255 i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +++..|  + ..+++|++|++++|+|+
T Consensus       323 l~~~~~--~-~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          323 ITDIRP--L-ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCCGG--G-GGCTTCSEESSSCC---
T ss_pred             cccccC--h-hhhhccceeehhhhccc
Confidence            885444  3 36888888888888875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=2.1e-22  Score=172.52  Aligned_cols=198  Identities=21%  Similarity=0.308  Sum_probs=133.0

Q ss_pred             CCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcE
Q 036746           72 PRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV  151 (281)
Q Consensus        72 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (281)
                      ...++++.|++++|.+.+.. . +..+++|++|++++|......+ .+..+++|++|++++|.+.+ ++. +..+++|++
T Consensus       107 ~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~  181 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYS  181 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSE
T ss_pred             cCCCcCCEEECcCCcccCch-h-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCE
Confidence            34467788888887776432 2 6667777777777765443332 35556666666666555542 221 444455555


Q ss_pred             EEccCCCCCCCCC--------------------cccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccC
Q 036746          152 VSLALNHLVGKIP--------------------SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSI  211 (281)
Q Consensus       152 L~l~~n~~~~~~~--------------------~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  211 (281)
                      |++++|.+.+..+                    ..+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ +
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~  258 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I  258 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C
Confidence            5555554442111                    1156677788888888777643 33 7778888888888888874 3


Q ss_pred             CccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          212 PDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       212 p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       ..+..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++..|..+. .+++|+.|++++|+++
T Consensus       259 -~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCC
T ss_pred             -hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccc
Confidence             457788899999999998875 3 4578889999999999999865555554 7999999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=7.2e-23  Score=163.04  Aligned_cols=181  Identities=21%  Similarity=0.202  Sum_probs=129.6

Q ss_pred             CCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC
Q 036746           62 FCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA  141 (281)
Q Consensus        62 ~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  141 (281)
                      .|.|.++.|..            +++. .+|..+  .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus         6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A            6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence            46777776643            3332 233333  35778888888888765555677788888888888888744444


Q ss_pred             CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCC
Q 036746          142 STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL  221 (281)
Q Consensus       142 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  221 (281)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            56778888888888888875555557778888888888888775555557778888888888888875555567778888


Q ss_pred             CEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhh
Q 036746          222 VNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG  264 (281)
Q Consensus       222 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~  264 (281)
                      +.|++++|.+.+       .+++|+.|++..|.++|.+|..+.
T Consensus       151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence            888888887653       345778888888888888876654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=1.6e-22  Score=180.20  Aligned_cols=190  Identities=24%  Similarity=0.325  Sum_probs=131.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..|  ++.+++|++|++++|.+.+ + +.+..+++|++|++++|.+.+..+  +..+++|++|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  272 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  272 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence            556666666666554433  4556666666666666653 2 345667777777777777764322  667777777777


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+.+. +. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..|  +..+++|++|++++|.+++.
T Consensus       273 ~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          273 GANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            77777743 33 6777778888887777764322  6677788888888888775554  56778888888888888753


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                        ..+..+++|+.|++++|++++..|  + ..+++|+.|++++|+++
T Consensus       347 --~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          347 --SSLANLTNINWLSAGHNQISDLTP--L-ANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCBCGG--G-TTCTTCCEEECCCEEEE
T ss_pred             --hhhccCCCCCEEeCCCCccCccch--h-hcCCCCCEEeccCCccc
Confidence              467788888888888888886655  3 37888888888888753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=2.1e-23  Score=176.89  Aligned_cols=193  Identities=17%  Similarity=0.133  Sum_probs=165.7

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..|..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ ++    ..++|++|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l  106 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA  106 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence            689999999999998878889999999999999999986544  8899999999999999984 33    3389999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccC-CCCCCCCEEEcccCcccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF-GGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~  233 (281)
                      ++|.+.+..+.   .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++
T Consensus       107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            99999854433   36889999999999987777788889999999999999997777666 478999999999999985


Q ss_pred             ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      . +. ...+++|++|++++|.++ .+|..+. .+++|+.|++++|+++
T Consensus       184 ~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          184 V-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV  227 (317)
T ss_dssp             E-EC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC
T ss_pred             c-cc-ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc
Confidence            4 33 335899999999999999 5666665 7999999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=1.2e-21  Score=174.02  Aligned_cols=183  Identities=20%  Similarity=0.191  Sum_probs=115.5

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+. |  ++.+++|++|++++|.+.+. +  +.++++|++|++++|.+++ +|  +..+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            5666777777766553 2  66666777777777766642 2  5666777777777777663 33  666677777777


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+++.   .++.+++|++|++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.+++.
T Consensus       135 ~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          135 ARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             TTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence            77766642   2556666666666666444343  25566677777777777664 34  56666677777777766643


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                         .+..+++|+.|++++|++++ +|  + ..+++|+.|++++|+++
T Consensus       207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~-~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          207 ---DLNQNIQLTFLDCSSNKLTE-ID--V-TPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ---CCTTCTTCSEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCS
T ss_pred             ---ccccCCCCCEEECcCCcccc-cC--c-cccCCCCEEEeeCCcCC
Confidence               25666677777777777764 55  3 25667777777776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.2e-24  Score=189.35  Aligned_cols=209  Identities=19%  Similarity=0.251  Sum_probs=167.5

Q ss_pred             CCCcEEEEEcCCCC---ceeecCccc-------cCCCCCCEEeCCCCCCcc----CCchhccCCCCCCEEEccCccCccc
Q 036746           73 RYQRVTILDLQNLK---LVGTLSPHI-------GNLSFLQKLDLRNNSFTN----AIPPQIGHLRRLQILYLQINSFDGE  138 (281)
Q Consensus        73 ~~~~l~~L~l~~~~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~  138 (281)
                      ..++++.|++++|.   +.+.+|..+       ..+++|++|++++|.+.+    .++..+..+++|++|++++|.+...
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            45789999998864   445555544       688999999999999986    3666788899999999999998743


Q ss_pred             CCC----CCCCC---------CCCcEEEccCCCCC-CCCC---cccCCCCCCcEEecccccccc-----CCCcccCCCCC
Q 036746          139 IPA----STSNC---------SNLLVVSLALNHLV-GKIP---SEFGSLSKLQFLSTTANNLIG-----NIPSSLGNLSS  196 (281)
Q Consensus       139 ~~~----~~~~l---------~~L~~L~l~~n~~~-~~~~---~~l~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~  196 (281)
                      .+.    .+..+         ++|++|++++|.+. ..++   ..+..+++|++|++++|.+..     ..+..+..+++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence            333    33334         89999999999987 3344   456778999999999998862     23336788999


Q ss_pred             CCEEEcccCcCc----ccCCccCCCCCCCCEEEcccCccccc----cChhccC--CCCCcEEEcccCcccc----cCChh
Q 036746          197 LRGLSLSRNGFY----GSIPDTFGGLKNLVNLSLVVNNLSGT----IPPSIFN--ISSIQTFDVGSTYIEG----EMPLD  262 (281)
Q Consensus       197 L~~L~l~~n~~~----~~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~--l~~L~~L~l~~n~i~~----~~p~~  262 (281)
                      |++|++++|.++    ..+|..+..+++|+.|++++|.+++.    ++..+..  +++|++|++++|.+++    .+|..
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            999999999996    56788888999999999999999865    4566643  8999999999999997    48887


Q ss_pred             hhhCCCCCCEEeccCccCC
Q 036746          263 LGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       263 ~~~~~~~L~~L~l~~N~lt  281 (281)
                      +...+++|+.|++++|+++
T Consensus       298 l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          298 IDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHCTTCCEEECTTSBSC
T ss_pred             HHhcCCCceEEEccCCcCC
Confidence            7657899999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=2.4e-21  Score=171.97  Aligned_cols=185  Identities=17%  Similarity=0.219  Sum_probs=162.3

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      .++++.|+++++.+.+. | .++.+++|++|++++|.+.+ +|  +..+++|++|++++|.+++ ++  +.++++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence            37899999999999864 5 68999999999999999986 44  8899999999999999995 44  88999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+.+ ++  ++.+++|++|++++|.+.+. +  +..+++|++|++++|...+.+  .+..+++|+.|++++|.+++
T Consensus       113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence            99999986 44  88999999999999999863 3  888999999999999766566  47889999999999999985


Q ss_pred             ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       +|  +..+++|+.|++++|.+++ ++  + ..+++|+.|++++|+++
T Consensus       185 -l~--l~~l~~L~~L~l~~N~l~~-~~--l-~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          185 -LD--VSQNKLLNRLNCDTNNITK-LD--L-NQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             -CC--CTTCTTCCEEECCSSCCSC-CC--C-TTCTTCSEEECCSSCCS
T ss_pred             -ec--cccCCCCCEEECcCCcCCe-ec--c-ccCCCCCEEECcCCccc
Confidence             55  7889999999999999995 43  4 37899999999999985

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=7.6e-23  Score=172.83  Aligned_cols=202  Identities=20%  Similarity=0.237  Sum_probs=165.0

Q ss_pred             CcEEEEEcCCCCceeecCc---cccCCCCCCEEeCCCCCCccCCchhc--cCCCCCCEEEccCccCcccCC----CCCCC
Q 036746           75 QRVTILDLQNLKLVGTLSP---HIGNLSFLQKLDLRNNSFTNAIPPQI--GHLRRLQILYLQINSFDGEIP----ASTSN  145 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~  145 (281)
                      .+++.+.+.++.+....-.   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4577888888776532111   12245679999999999998888887  899999999999999986544    34557


Q ss_pred             CCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccC--C--CcccCCCCCCCEEEcccCcCcccCCc----cCCC
Q 036746          146 CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGN--I--PSSLGNLSSLRGLSLSRNGFYGSIPD----TFGG  217 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~p~----~~~~  217 (281)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  +  +..+..+++|++|++++|.++ .++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            89999999999999988888999999999999999987542  2  233468899999999999997 3332    2467


Q ss_pred             CCCCCEEEcccCccccccChhccCC---CCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          218 LKNLVNLSLVVNNLSGTIPPSIFNI---SSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       218 l~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.   ++|+.|++++|+++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLN  285 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCC
Confidence            8999999999999998778777776   69999999999999 7887663   79999999999985

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=9.8e-23  Score=182.38  Aligned_cols=181  Identities=15%  Similarity=0.133  Sum_probs=143.6

Q ss_pred             ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCc---------
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPS---------  165 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---------  165 (281)
                      ...+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+.+..+.         
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~  107 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence            3345589999999999998888899999999999999999986555  88888898888888876532110         


Q ss_pred             -------ccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCC-CCCCCCEEEcccCccccccCh
Q 036746          166 -------EFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFG-GLKNLVNLSLVVNNLSGTIPP  237 (281)
Q Consensus       166 -------~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~  237 (281)
                             ....+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |.
T Consensus       108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~  186 (487)
T 3oja_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG  186 (487)
T ss_dssp             SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred             CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc
Confidence                   012356788888888888777677788888889999999988877777765 688899999999988854 32


Q ss_pred             hccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          238 SIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       238 ~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       ...+++|+.|++++|.+++ +|..+. .+++|+.|++++|+|+
T Consensus       187 -~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          187 -QVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLV  227 (487)
T ss_dssp             -CCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCC
T ss_pred             -cccCCCCCEEECCCCCCCC-CCHhHc-CCCCccEEEecCCcCc
Confidence             3358899999999999984 555655 7899999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.3e-21  Score=155.82  Aligned_cols=175  Identities=22%  Similarity=0.183  Sum_probs=146.7

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            68999999999998776777889999999999999999666667889999999999999999555556789999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+       .++.|+.|+++.|.++|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence            9999997666678999999999999999986666668889999999999998763       456889999999999999


Q ss_pred             cChhccCCCCCcEEEcccCcccccCC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMP  260 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p  260 (281)
                      +|..++.++.    ++..|...+..+
T Consensus       181 ip~~~~~l~~----~~~~C~~~~~~~  202 (208)
T 2o6s_A          181 VRNSAGSVAP----DSAKCSGSGKPV  202 (208)
T ss_dssp             BBCTTSSBCT----TCSBBTTTCCBG
T ss_pred             eeccCccccC----CccccccCCCcc
Confidence            9988876655    444554443333

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6.7e-24  Score=181.06  Aligned_cols=202  Identities=20%  Similarity=0.247  Sum_probs=152.1

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccC-CchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNA-IPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      .+++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5678888888887766554 55788888888888887754 667778888888888888888777777778888888888


Q ss_pred             ccCC-CCCC-CCCcccCCCCCCcEEecccc-ccccC-CCcccCCCC-CCCEEEcccC--cCc-ccCCccCCCCCCCCEEE
Q 036746          154 LALN-HLVG-KIPSEFGSLSKLQFLSTTAN-NLIGN-IPSSLGNLS-SLRGLSLSRN--GFY-GSIPDTFGGLKNLVNLS  225 (281)
Q Consensus       154 l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~~~-~~~p~~~~~l~~L~~L~  225 (281)
                      +++| .+++ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|  .++ +.+|..+..+++|+.|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            8888 5664 25556777888888888888 76643 455567777 8888888888  454 34666677788888888


Q ss_pred             cccCc-cccccChhccCCCCCcEEEcccCc-ccccCChhhhhCCCCCCEEeccCc
Q 036746          226 LVVNN-LSGTIPPSIFNISSIQTFDVGSTY-IEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       226 l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      +++|. +++..+..+..+++|++|++++|. +.......+. .+++|+.|++++|
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~  282 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc
Confidence            88888 666677778888888888888884 3322222343 6888888888887

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=1.7e-21  Score=173.50  Aligned_cols=191  Identities=27%  Similarity=0.376  Sum_probs=148.7

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      .++++.|++++|.+.+.  +.+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++ + ..+..+++|++|+
T Consensus       176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~  249 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLD  249 (466)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred             CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEE
Confidence            46778888888877543  347778888888888888875433  6678888888888888873 3 3567788899999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+.+..+  +..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus       250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          250 LANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred             CCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence            99888875433  78888899999998888754 33 7788899999999998885443  6788899999999999886


Q ss_pred             ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ..|  +..+++|+.|++++|++++ + ..+. .+++|+.|++++|+++
T Consensus       324 ~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          324 ISP--VSSLTKLQRLFFYNNKVSD-V-SSLA-NLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCC-C-GGGT-TCTTCCEEECCSSCCC
T ss_pred             chh--hccCccCCEeECCCCccCC-c-hhhc-cCCCCCEEeCCCCccC
Confidence            544  6788999999999999885 3 3444 7899999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=2.8e-22  Score=184.47  Aligned_cols=201  Identities=20%  Similarity=0.160  Sum_probs=143.8

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ..++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            46788888888887766777888888888888888887666667888888888888888887544456788888888888


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEecccccccc-CCCcccCCCCCCCEEEcccCcCcccCCccCCCCCC----CCEEEcccC
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN----LVNLSLVVN  229 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~----L~~L~l~~n  229 (281)
                      ++|.+++..+..|+.+++|++|++++|.+.. ..|..+..+++|++|++++|.+++..|..+..+.+    ...++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            8888886555667888888888888887764 35667777888888888888887666666654433    346777778


Q ss_pred             ccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEecc
Q 036746          230 NLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT  276 (281)
Q Consensus       230 ~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~  276 (281)
                      .++.. +........++.+++.+|.....++...+..++.++...+.
T Consensus       212 ~l~~i-~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~  257 (635)
T 4g8a_A          212 PMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  257 (635)
T ss_dssp             CCCEE-CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred             ccccc-CcccccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence            77743 33333445567777777765544544444466666655543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2e-21  Score=163.93  Aligned_cols=172  Identities=26%  Similarity=0.351  Sum_probs=148.2

Q ss_pred             ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  174 (281)
                      ...+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ + +.+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence            346789999999999988 455 5889999999999999998 4555 8999999999999999985 3 4689999999


Q ss_pred             EEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746          175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  254 (281)
                      +|++++|.+.+ ++ .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence            99999999875 44 38999999999999999985433  8889999999999999985 444 8899999999999999


Q ss_pred             ccccCChhhhhCCCCCCEEeccCccCC
Q 036746          255 IEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       255 i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +++ ++. + ..+++|+.|++++|+++
T Consensus       185 l~~-~~~-l-~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          185 ISD-ISP-L-ASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CCC-CGG-G-GGCTTCCEEECTTSCCC
T ss_pred             cCc-Chh-h-cCCCCCCEEEccCCccC
Confidence            984 443 4 47999999999999975

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=3.8e-21  Score=176.95  Aligned_cols=205  Identities=22%  Similarity=0.242  Sum_probs=163.8

Q ss_pred             CcEEEEEcCCCCce--eecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-CCCCCCCCCcE
Q 036746           75 QRVTILDLQNLKLV--GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP-ASTSNCSNLLV  151 (281)
Q Consensus        75 ~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~  151 (281)
                      +.++.+++++|.+.  +..+..+..+.+|+++++..+.... .+..+..+++|+.+++..+......+ ..+..+++++.
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~  449 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  449 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred             cccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccc
Confidence            45556666665553  2334444555666666666665552 34456677888888888777664433 45778899999


Q ss_pred             EEccCCCCCCCCCcccCCCCCCcEEeccccccc-cCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCc
Q 036746          152 VSLALNHLVGKIPSEFGSLSKLQFLSTTANNLI-GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       152 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~  230 (281)
                      ++++.|.+.+..+..+..++.+++|++++|... +..|..+..+++|++|++++|++++..|..|.++++|++|++++|+
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~  529 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  529 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence            999999999888888899999999999999754 3467889999999999999999998889999999999999999999


Q ss_pred             cccccChhccCCCCCcEEEcccCcccccCChhhhhCC-CCCCEEeccCccCC
Q 036746          231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTL-PNLRIFSITGNQFT  281 (281)
Q Consensus       231 l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~-~~L~~L~l~~N~lt  281 (281)
                      +++..|..+..+++|+.||+++|++++..|..+. .+ ++|+.|++++|+++
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT-CCCTTCCEEECTTCCBC
T ss_pred             CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH-hhhCcCCEEEeeCCCCc
Confidence            9987788899999999999999999976666665 56 68999999999985

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.87  E-value=1.6e-21  Score=163.22  Aligned_cols=170  Identities=24%  Similarity=0.330  Sum_probs=141.6

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      ..+++.|+++++.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            36789999999988643 3 48889999999999999985 444 8899999999999999874 33 488899999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+.+.  +.+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|  +..+++|+.|++++|.+++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            999998853  5688899999999999988754  568888999999999999985544  8889999999999999984


Q ss_pred             ccChhccCCCCCcEEEcccCcccc
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                       ++ .+..+++|+.|++++|++.+
T Consensus       193 -l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          193 -LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             -Ch-hhccCCCCCEEECcCCcccC
Confidence             44 47889999999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.2e-23  Score=182.94  Aligned_cols=207  Identities=14%  Similarity=0.159  Sum_probs=166.8

Q ss_pred             CcEEEEEcCCCCceeec----CccccCCCCCCEEeCCCCCC---ccCCchhc-------cCCCCCCEEEccCccCcc---
Q 036746           75 QRVTILDLQNLKLVGTL----SPHIGNLSFLQKLDLRNNSF---TNAIPPQI-------GHLRRLQILYLQINSFDG---  137 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~n~l---~~~~~~~~-------~~l~~L~~L~l~~n~l~~---  137 (281)
                      ++++.|++++|.+.+..    +..+..+++|++|++++|.+   .+.+|..+       ..+++|++|++++|.+.+   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            67999999999987653    34577899999999999644   44455544       689999999999999986   


Q ss_pred             -cCCCCCCCCCCCcEEEccCCCCCCCCCcc----cCCC---------CCCcEEeccccccc-cCCC---cccCCCCCCCE
Q 036746          138 -EIPASTSNCSNLLVVSLALNHLVGKIPSE----FGSL---------SKLQFLSTTANNLI-GNIP---SSLGNLSSLRG  199 (281)
Q Consensus       138 -~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~~~-~~~~---~~l~~l~~L~~  199 (281)
                       .+|..+..+++|++|++++|.+....+..    +..+         ++|++|++++|.+. +..+   ..+..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             46777888999999999999986433333    3333         89999999999986 3334   45667889999


Q ss_pred             EEcccCcCcc-----cCCccCCCCCCCCEEEcccCccc----cccChhccCCCCCcEEEcccCccccc----CChhhh-h
Q 036746          200 LSLSRNGFYG-----SIPDTFGGLKNLVNLSLVVNNLS----GTIPPSIFNISSIQTFDVGSTYIEGE----MPLDLG-T  265 (281)
Q Consensus       200 L~l~~n~~~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~~l~~l~~L~~L~l~~n~i~~~----~p~~~~-~  265 (281)
                      |++++|.+..     ..|..+..+++|+.|++++|.++    +.+|..+..+++|++|++++|.+++.    ++..+. .
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            9999999973     24447889999999999999996    56788899999999999999999865    344442 1


Q ss_pred             CCCCCCEEeccCccCC
Q 036746          266 TLPNLRIFSITGNQFT  281 (281)
Q Consensus       266 ~~~~L~~L~l~~N~lt  281 (281)
                      .+++|+.|++++|+++
T Consensus       272 ~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             SSCCCCEEECCSSCCB
T ss_pred             cCCCeEEEECcCCcCC
Confidence            3899999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.87  E-value=2.5e-21  Score=166.97  Aligned_cols=175  Identities=21%  Similarity=0.206  Sum_probs=126.8

Q ss_pred             EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhcc-CCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC
Q 036746           79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIG-HLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN  157 (281)
Q Consensus        79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  157 (281)
                      .++++++++. .+|..+.  +.++.|+|++|.+.+..+..+. ++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            5777777775 4565443  4578888888888866666676 7888888888888888666667888888888888888


Q ss_pred             CCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccC---CCCCCCCEEEcccCccccc
Q 036746          158 HLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF---GGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       158 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~---~~l~~L~~L~l~~n~l~~~  234 (281)
                      .+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+   ..+++|+.|++++|++++.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            8876556667788888888888888776667777778888888888888774333334   4577777888888777744


Q ss_pred             cChhccCCCC--CcEEEcccCccc
Q 036746          235 IPPSIFNISS--IQTFDVGSTYIE  256 (281)
Q Consensus       235 ~p~~l~~l~~--L~~L~l~~n~i~  256 (281)
                      .+..+..++.  ++.|++++|++.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            4445666655  367777777766

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=5.2e-21  Score=153.67  Aligned_cols=153  Identities=25%  Similarity=0.250  Sum_probs=131.3

Q ss_pred             CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc
Q 036746          102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN  181 (281)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  181 (281)
                      +.++++++.+. .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            67888888887 5666553  68999999999999666668899999999999999999777888999999999999999


Q ss_pred             ccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc
Q 036746          182 NLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                      .+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9885555567889999999999999997778889999999999999999987766778889999999999998874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=9.8e-24  Score=180.04  Aligned_cols=212  Identities=17%  Similarity=0.186  Sum_probs=177.0

Q ss_pred             CCCcccceEecCCCCcEEEEEcCCCCceeecCccccCC--CCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCccc
Q 036746           61 HFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNL--SFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGE  138 (281)
Q Consensus        61 ~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  138 (281)
                      .+..|+++.+++  ..++.++++++.+.   +..+..+  +.++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus        35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~  108 (336)
T 2ast_B           35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS  108 (336)
T ss_dssp             SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred             HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence            344688877653  45788999998875   4455666  8999999999999876555 56899999999999998865


Q ss_pred             -CCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc-ccccC-CCcccCCCCCCCEEEcccC-cCccc-CCc
Q 036746          139 -IPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN-NLIGN-IPSSLGNLSSLRGLSLSRN-GFYGS-IPD  213 (281)
Q Consensus       139 -~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~p~  213 (281)
                       ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+.+. ++..+..+++|++|++++| .+++. ++.
T Consensus       109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence             7778889999999999999998777888999999999999999 56542 5566778999999999999 88854 677


Q ss_pred             cCCCCC-CCCEEEcccC--ccc-cccChhccCCCCCcEEEcccCc-ccccCChhhhhCCCCCCEEeccCcc
Q 036746          214 TFGGLK-NLVNLSLVVN--NLS-GTIPPSIFNISSIQTFDVGSTY-IEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       214 ~~~~l~-~L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~l~~n~-i~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      .+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+. .+++|+.|++++|.
T Consensus       189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~  258 (336)
T 2ast_B          189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCT
T ss_pred             HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCC
Confidence            788899 9999999999  555 4567788899999999999999 7777777776 78999999999984

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=1.6e-20  Score=151.68  Aligned_cols=156  Identities=24%  Similarity=0.231  Sum_probs=133.1

Q ss_pred             CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746          101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  180 (281)
                      -+.++.+++.+. .+|..+  .++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            367888888887 566654  37899999999999977788899999999999999999865556678999999999999


Q ss_pred             cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCC
Q 036746          181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP  260 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p  260 (281)
                      |.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9998666667888999999999999998 788888899999999999999986656678889999999999999885443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.2e-23  Score=177.10  Aligned_cols=205  Identities=18%  Similarity=0.188  Sum_probs=158.9

Q ss_pred             CcEEEEEcCCCCceeecC----ccccCCC-CCCEEeCCCCCCccCCchhccCC-----CCCCEEEccCccCcccCCCC--
Q 036746           75 QRVTILDLQNLKLVGTLS----PHIGNLS-FLQKLDLRNNSFTNAIPPQIGHL-----RRLQILYLQINSFDGEIPAS--  142 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~--  142 (281)
                      .+++.|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            569999999999987665    6677888 89999999999987767666654     89999999999998655443  


Q ss_pred             --CCCC-CCCcEEEccCCCCCCCCCcc----cCC-CCCCcEEeccccccccCCC----cccCCCC-CCCEEEcccCcCcc
Q 036746          143 --TSNC-SNLLVVSLALNHLVGKIPSE----FGS-LSKLQFLSTTANNLIGNIP----SSLGNLS-SLRGLSLSRNGFYG  209 (281)
Q Consensus       143 --~~~l-~~L~~L~l~~n~~~~~~~~~----l~~-l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~  209 (281)
                        +..+ ++|++|++++|.++...+..    +.. .++|++|++++|.+.+..+    ..+...+ +|++|++++|.+++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              3444 89999999999998655544    344 3589999999999875433    3344554 89999999999986


Q ss_pred             cCCccC----CCC-CCCCEEEcccCccccc----cChhccC-CCCCcEEEcccCcccccCChh---hhhCCCCCCEEecc
Q 036746          210 SIPDTF----GGL-KNLVNLSLVVNNLSGT----IPPSIFN-ISSIQTFDVGSTYIEGEMPLD---LGTTLPNLRIFSIT  276 (281)
Q Consensus       210 ~~p~~~----~~l-~~L~~L~l~~n~l~~~----~p~~l~~-l~~L~~L~l~~n~i~~~~p~~---~~~~~~~L~~L~l~  276 (281)
                      ..+..+    ... ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..+..   +...+++|+.|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            665433    344 5999999999999853    4555655 459999999999998654422   33577899999999


Q ss_pred             Ccc
Q 036746          277 GNQ  279 (281)
Q Consensus       277 ~N~  279 (281)
                      +|+
T Consensus       262 ~n~  264 (362)
T 3goz_A          262 YDI  264 (362)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            997

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=2.1e-20  Score=151.02  Aligned_cols=166  Identities=23%  Similarity=0.252  Sum_probs=136.7

Q ss_pred             CCCCCCCCCCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC
Q 036746           53 LGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI  132 (281)
Q Consensus        53 ~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  132 (281)
                      ...|..+...|.|.++.|.            ++++ ..+|..+.  ++|++|++++|.+.+..+..|.++++|++|++++
T Consensus         9 ~~~~~~~~~~Cs~~~v~c~------------~~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~   73 (229)
T 3e6j_A            9 HSAACPSQCSCSGTTVDCR------------SKRH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS   73 (229)
T ss_dssp             --CCCCTTCEEETTEEECT------------TSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             hhccCCCCCEEeCCEeEcc------------CCCc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC
Confidence            4456667788999887775            3333 24555443  7899999999999987788899999999999999


Q ss_pred             ccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC
Q 036746          133 NSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP  212 (281)
Q Consensus       133 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  212 (281)
                      |.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+
T Consensus        74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A           74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence            9998444456789999999999999999666667889999999999999988 778888999999999999999996666


Q ss_pred             ccCCCCCCCCEEEcccCccccc
Q 036746          213 DTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       213 ~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ..+..+++|+.|++++|.+...
T Consensus       153 ~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          153 GAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTTCTTCCEEECTTSCBCTT
T ss_pred             HHHhCCCCCCEEEeeCCCccCC
Confidence            7788999999999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=2.6e-20  Score=149.56  Aligned_cols=151  Identities=21%  Similarity=0.236  Sum_probs=134.8

Q ss_pred             EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCC
Q 036746           79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNH  158 (281)
Q Consensus        79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  158 (281)
                      .++++++++. .+|..+.  +.+++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            5667777765 5666554  789999999999997777789999999999999999998889999999999999999999


Q ss_pred             CCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          159 LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       159 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      +....+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99655566889999999999999999888889999999999999999999777778999999999999999886

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=3e-20  Score=149.24  Aligned_cols=153  Identities=26%  Similarity=0.275  Sum_probs=130.8

Q ss_pred             EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCc-hhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC
Q 036746           79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-PQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN  157 (281)
Q Consensus        79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  157 (281)
                      .++++++.+. .+|..+.  ..+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            6888888876 4666554  467899999999986644 45789999999999999999776778999999999999999


Q ss_pred             CCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          158 HLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       158 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      .+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+...
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99977777789999999999999999887788899999999999999999977788899999999999999988743

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=151.03  Aligned_cols=156  Identities=21%  Similarity=0.201  Sum_probs=137.5

Q ss_pred             CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-CCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746          102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP-ASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  180 (281)
                      +.+++++|.+. .+|..+  .+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            68999999988 567655  3467899999999996644 4578999999999999999977777899999999999999


Q ss_pred             cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCC
Q 036746          181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP  260 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p  260 (281)
                      |.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+..+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99987777779999999999999999998888999999999999999999998778899999999999999999986544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=1e-20  Score=162.45  Aligned_cols=209  Identities=20%  Similarity=0.148  Sum_probs=151.1

Q ss_pred             CcccceEecCC---------CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCc-hhccCCCCCCE-EEcc
Q 036746           63 CQWYGVTCSPR---------YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-PQIGHLRRLQI-LYLQ  131 (281)
Q Consensus        63 c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~  131 (281)
                      |.+..+.|...         ..+++.|++++|++....+..|.++++|++|+|++|.+.+.+| ..|.++++++. +.+.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56666777521         1568889999999875555678889999999999998865544 46778888765 5666


Q ss_pred             CccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc-ccccCCCcccCCC-CCCCEEEcccCcCcc
Q 036746          132 INSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN-NLIGNIPSSLGNL-SSLRGLSLSRNGFYG  209 (281)
Q Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l-~~L~~L~l~~n~~~~  209 (281)
                      .|+++...|..|..+++|++|++++|.+....+..+....++..+++.++ .+....+..+..+ ..+++|++++|+++ 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence            78888666778888999999999999888655556666777888888664 4443333445555 36888999999988 


Q ss_pred             cCCccCCCCCCCCEEEccc-CccccccC-hhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccC
Q 036746          210 SIPDTFGGLKNLVNLSLVV-NNLSGTIP-PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITG  277 (281)
Q Consensus       210 ~~p~~~~~l~~L~~L~l~~-n~l~~~~p-~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~  277 (281)
                      .+|.......+|+++++.+ |.++ .+| ..+..+++|+.||+++|+|+ .+|...   +.+|+.|.+.+
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~  232 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARS  232 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTT
T ss_pred             CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhcc
Confidence            5555555667888898875 5565 555 46788899999999999988 677644   44566665544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.85  E-value=2.3e-20  Score=156.19  Aligned_cols=171  Identities=24%  Similarity=0.328  Sum_probs=133.4

Q ss_pred             ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  174 (281)
                      ...+++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ + +.+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence            3467788888888888873 33 47788888889998888884 444 7888888899988888874 3 3488888888


Q ss_pred             EEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746          175 FLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  254 (281)
                      +|++++|.+.+ + ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            99888888864 3 4577888888899988888743  567788888889998888885433  7788888889998888


Q ss_pred             ccccCChhhhhCCCCCCEEeccCccC
Q 036746          255 IEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       255 i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++ .++. + ..+++|+.|++++|++
T Consensus       190 i~-~l~~-l-~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          190 IS-DLRA-L-AGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CC-BCGG-G-TTCTTCSEEEEEEEEE
T ss_pred             CC-CChh-h-ccCCCCCEEECcCCcc
Confidence            88 4543 4 3788888888888875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=4.1e-23  Score=178.18  Aligned_cols=206  Identities=19%  Similarity=0.201  Sum_probs=156.2

Q ss_pred             cEEEEEcCCCCceeecCccccCC-----CCCCEEeCCCCCCccCCchh----ccCC-CCCCEEEccCccCcccCCCC---
Q 036746           76 RVTILDLQNLKLVGTLSPHIGNL-----SFLQKLDLRNNSFTNAIPPQ----IGHL-RRLQILYLQINSFDGEIPAS---  142 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~~~~~---  142 (281)
                      +++.|++++|.+.+..+..+..+     ++|++|++++|.+.+..+..    +..+ ++|++|++++|.+++..+..   
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            89999999999987767666664     99999999999998766654    4445 89999999999998544433   


Q ss_pred             -CCC-CCCCcEEEccCCCCCCCCC----cccCCCC-CCcEEeccccccccCCCcc----cCCC-CCCCEEEcccCcCccc
Q 036746          143 -TSN-CSNLLVVSLALNHLVGKIP----SEFGSLS-KLQFLSTTANNLIGNIPSS----LGNL-SSLRGLSLSRNGFYGS  210 (281)
Q Consensus       143 -~~~-l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~  210 (281)
                       +.. .++|++|++++|.+....+    ..+..++ +|++|++++|.+.+..+..    +... ++|++|++++|.+.+.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence             334 3699999999999985433    3345555 8999999999998665543    3444 5999999999999853


Q ss_pred             ----CCccCCC-CCCCCEEEcccCccccccC----hhccCCCCCcEEEcccCcccccCChh------hhhCCCCCCEEec
Q 036746          211 ----IPDTFGG-LKNLVNLSLVVNNLSGTIP----PSIFNISSIQTFDVGSTYIEGEMPLD------LGTTLPNLRIFSI  275 (281)
Q Consensus       211 ----~p~~~~~-l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~i~~~~p~~------~~~~~~~L~~L~l  275 (281)
                          ++..+.. .++|++|++++|.+++..+    ..+..+++|+.|++++|.+.+..+..      .+..+++|+.||+
T Consensus       212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL  291 (362)
T 3goz_A          212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK  291 (362)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence                4555555 4699999999999986443    34567799999999999955322221      1236778999999


Q ss_pred             cCccCC
Q 036746          276 TGNQFT  281 (281)
Q Consensus       276 ~~N~lt  281 (281)
                      ++|++.
T Consensus       292 ~~N~l~  297 (362)
T 3goz_A          292 NGKEIH  297 (362)
T ss_dssp             TSCBCC
T ss_pred             CCCcCC
Confidence            999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.85  E-value=8.1e-21  Score=149.91  Aligned_cols=150  Identities=15%  Similarity=0.224  Sum_probs=84.9

Q ss_pred             CCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEE
Q 036746          122 LRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLS  201 (281)
Q Consensus       122 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  201 (281)
                      +++|++|++++|.++ .+| .+..+++|++|++++|.+.  .++.+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            344455555555444 333 3444555555555555332  123455556666666666665554555566666666666


Q ss_pred             cccCcCcccCCccCCCCCCCCEEEcccCc-cccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNN-LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       202 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++ ++ .+. .+++|+.|++++|++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~-~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIE-DFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGG-GCSSCCEEEECBC--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhc-cCCCCCEEEeeCccc
Confidence            66666665555566666666666666665 43 343 45666677777777776663 33 333 566777777777665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.7e-21  Score=164.05  Aligned_cols=198  Identities=18%  Similarity=0.141  Sum_probs=146.0

Q ss_pred             EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC-CCCCCCCCcE-EEccC
Q 036746           79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA-STSNCSNLLV-VSLAL  156 (281)
Q Consensus        79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~-L~l~~  156 (281)
                      .++.++++++ .+|..+.  +++++|+|++|.++...+..|.++++|++|++++|.+.+.+|. .|.+++++++ +.+..
T Consensus        13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4667777776 5666552  6788899999888855556788888999999998887655554 5678888775 45667


Q ss_pred             CCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEccc-CcCcccCCccCCCC-CCCCEEEcccCccccc
Q 036746          157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSR-NGFYGSIPDTFGGL-KNLVNLSLVVNNLSGT  234 (281)
Q Consensus       157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l-~~L~~L~l~~n~l~~~  234 (281)
                      |++....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++ .
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~  168 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  168 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence            888866677888888999999988888755555555666777888866 45553444556555 45788889888887 5


Q ss_pred             cChhccCCCCCcEEEccc-CcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          235 IPPSIFNISSIQTFDVGS-TYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~-n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +|.......+++.+++.+ |.++ .+|.+.+..+++|++||+++|+|+
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred             CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence            566555667888888875 4555 788877778888999999988875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=1.7e-20  Score=161.67  Aligned_cols=174  Identities=21%  Similarity=0.252  Sum_probs=110.3

Q ss_pred             CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCC-CCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746          102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTS-NCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  180 (281)
                      +.++++++.+. .+|..+  .+.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            46666666666 355443  23566777777777654445555 667777777777777655555667777777777777


Q ss_pred             cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChh-c---cCCCCCcEEEcccCccc
Q 036746          181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPS-I---FNISSIQTFDVGSTYIE  256 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-l---~~l~~L~~L~l~~n~i~  256 (281)
                      |.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|.. +   ..+++|+.|++++|+|+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence            77665555556667777777777777765566667777777777777777763 3333 3   35667777777777776


Q ss_pred             ccCChhhhhCCCC--CCEEeccCccC
Q 036746          257 GEMPLDLGTTLPN--LRIFSITGNQF  280 (281)
Q Consensus       257 ~~~p~~~~~~~~~--L~~L~l~~N~l  280 (281)
                       .+|...+..++.  ++.|++++|++
T Consensus       177 -~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          177 -KLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             -CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             -ccCHHHhhhccHhhcceEEecCCCc
Confidence             455444435555  36677777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=8.2e-20  Score=167.28  Aligned_cols=183  Identities=24%  Similarity=0.289  Sum_probs=111.2

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+. .+|.   .+++|++|++++|.+.+ +|.   .+++|++|++++|.++ .+|..   +++|++|++
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~L  148 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSV  148 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred             CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEEC
Confidence            45666666666654 2333   44555666666555552 222   3344555555555444 23332   245555555


Q ss_pred             cCCCCCCCCCcc---cC--------------CCCCCcEEeccccccccCCCcccC-----------------CCCCCCEE
Q 036746          155 ALNHLVGKIPSE---FG--------------SLSKLQFLSTTANNLIGNIPSSLG-----------------NLSSLRGL  200 (281)
Q Consensus       155 ~~n~~~~~~~~~---l~--------------~l~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L  200 (281)
                      ++|.+.+ +|..   +.              .+++|+.|++++|.+.+ +|..+.                 .+++|++|
T Consensus       149 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L  226 (622)
T 3g06_A          149 SDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKEL  226 (622)
T ss_dssp             CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             cCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence            5555542 2221   11              12556666666666553 222111                 12567777


Q ss_pred             EcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       201 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++++|.++ .+|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+|+ .+|..+. .+++|+.|++++|++
T Consensus       227 ~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~-~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          227 IVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI-HLSSETTVNLEGNPL  296 (622)
T ss_dssp             ECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG-GSCTTCEEECCSCCC
T ss_pred             EccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh-hccccCEEEecCCCC
Confidence            77777776 355   44578888888888887 5565   5678999999999999 8888776 799999999999987


Q ss_pred             C
Q 036746          281 T  281 (281)
Q Consensus       281 t  281 (281)
                      +
T Consensus       297 ~  297 (622)
T 3g06_A          297 S  297 (622)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.84  E-value=2e-20  Score=171.08  Aligned_cols=170  Identities=24%  Similarity=0.340  Sum_probs=145.2

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      +.+++.|+++++.+.. ++ .+..+++|+.|+|++|.+.+. +. +..+++|+.|++++|.+. .+| .+..+++|++|+
T Consensus        42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEE
Confidence            4678899999999864 33 588999999999999999854 33 889999999999999998 344 788999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+.. + +.+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|+|++|.+++
T Consensus       116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            99999985 3 5688899999999999998754  568899999999999999986655  8889999999999999985


Q ss_pred             ccChhccCCCCCcEEEcccCcccc
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                       + +.+..+++|+.|+|++|++.+
T Consensus       190 -l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          190 -L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             -C-hHHccCCCCCEEEccCCcCcC
Confidence             4 468899999999999999884

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.84  E-value=7.6e-21  Score=150.07  Aligned_cols=153  Identities=17%  Similarity=0.186  Sum_probs=95.9

Q ss_pred             cCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcE
Q 036746           96 GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQF  175 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  175 (281)
                      ..+++|++|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34455666666666555 334 4556666666666666443  2235556666666666666666555566666666777


Q ss_pred             EeccccccccCCCcccCCCCCCCEEEcccCc-CcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCc
Q 036746          176 LSTTANNLIGNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  254 (281)
                      |++++|.+.+..+..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence            7777766665555666677777777777776 43 444 56677777777777777764 33 56677778888888877


Q ss_pred             cc
Q 036746          255 IE  256 (281)
Q Consensus       255 i~  256 (281)
                      |.
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            65

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=3.1e-20  Score=170.07  Aligned_cols=179  Identities=26%  Similarity=0.309  Sum_probs=103.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+. .+|.   .+++|++|++++|.+. .+|.   .+++|++|++++|.++ .+|.   .+++|+.|++
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEEC
Confidence            46667777777665 3444   4567777777777766 3444   5667777777777776 4444   4567777777


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCccc---CCC--------------CCCCEEEcccCcCcccCCccCCC
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSL---GNL--------------SSLRGLSLSRNGFYGSIPDTFGG  217 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l--------------~~L~~L~l~~n~~~~~~p~~~~~  217 (281)
                      ++|.++ .+|..   +++|++|++++|.+.+ +|..+   ..+              ++|++|++++|.+++ +|..+.+
T Consensus       129 ~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~  202 (622)
T 3g06_A          129 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSE  202 (622)
T ss_dssp             CSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTT
T ss_pred             CCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccch
Confidence            777776 34443   3778888888887764 33222   222              566777777776663 3322211


Q ss_pred             -----------------CCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          218 -----------------LKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       218 -----------------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                                       +++|+.|++++|.+++ +|   ..+++|+.|++++|.|+ .+|.    .+++|+.|++++|+|
T Consensus       203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L  273 (622)
T 3g06_A          203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQL  273 (622)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCC
T ss_pred             hhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCC
Confidence                             1344445555554442 33   23345555555555555 3443    345566666666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=4.5e-20  Score=168.72  Aligned_cols=170  Identities=24%  Similarity=0.334  Sum_probs=101.4

Q ss_pred             cCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcE
Q 036746           96 GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQF  175 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  175 (281)
                      ..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+ ++. +..+++|+.|++++|.+.+ + +.+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence            45566666666666665 233 35666666666666666663 222 5666666666666666653 2 25666666666


Q ss_pred             EeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746          176 LSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI  255 (281)
Q Consensus       176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i  255 (281)
                      |++++|.+.+ + ..+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.|
T Consensus       114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            6666666653 2 3455666666666666666533  355566666666666666664333  56666666666666666


Q ss_pred             cccCChhhhhCCCCCCEEeccCccC
Q 036746          256 EGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       256 ~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      ++ +| .+. .+++|+.|++++|++
T Consensus       188 ~~-l~-~l~-~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          188 SD-LR-ALA-GLKNLDVLELFSQEC  209 (605)
T ss_dssp             CB-CG-GGT-TCTTCSEEECCSEEE
T ss_pred             CC-Ch-HHc-cCCCCCEEEccCCcC
Confidence            63 32 232 566666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.83  E-value=6.5e-22  Score=184.80  Aligned_cols=223  Identities=19%  Similarity=0.131  Sum_probs=119.0

Q ss_pred             CCHhHHHHHHHHHhhcccCCCCCCCCCCC-CCCCCcccceEecCCCCcEEEEEcCCCCceeecCccccCCCCCCEEeC--
Q 036746           30 GNETDRAALLEFKSKITNDALGVLGSWND-SIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDL--  106 (281)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l--  106 (281)
                      ..+.++++++++.....+..+.....|.. ......|.+..+..  ++++.+++.++.+.. .+..+.....|..+.+  
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~  205 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDE  205 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccC
Confidence            34566788999988876666666666743 33456687766654  678888888777654 3333322222333222  


Q ss_pred             ---CCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccc
Q 036746          107 ---RNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL  183 (281)
Q Consensus       107 ---~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  183 (281)
                         ..|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence               223333 34666778888888888888887 77777778888888888888888 7788888888888888888888


Q ss_pred             ccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCC-CcEEEcccCcccccCC
Q 036746          184 IGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISS-IQTFDVGSTYIEGEMP  260 (281)
Q Consensus       184 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~l~~n~i~~~~p  260 (281)
                      . .+|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++.+|..+..... ...+++++|.+++.+|
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            7 67888888888888888888886 77777888888888888888888777666543211 1224455555554444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.83  E-value=5.6e-19  Score=156.64  Aligned_cols=160  Identities=23%  Similarity=0.371  Sum_probs=100.6

Q ss_pred             CCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEec
Q 036746           99 SFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLST  178 (281)
Q Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  178 (281)
                      ++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+   ++|++|++++|.+.+ +| .++.+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            456666666666663 44 3666666666666666666 344432   366666666666664 44 4666777777777


Q ss_pred             cccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccccc
Q 036746          179 TANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGE  258 (281)
Q Consensus       179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~  258 (281)
                      ++|.+.+ +|...   ++|++|++++|.+. .+| .++.+++|++|++++|++++ +|..   +++|+.|++++|.+++ 
T Consensus       203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-  271 (454)
T 1jl5_A          203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-  271 (454)
T ss_dssp             CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-
T ss_pred             CCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-
Confidence            7776653 33322   36777777777776 556 36777777777777777763 4432   3577777777777773 


Q ss_pred             CChhhhhCCCCCCEEeccCccCC
Q 036746          259 MPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       259 ~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +|.    .+++|+.|++++|+++
T Consensus       272 l~~----~~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          272 LPE----LPQSLTFLDVSENIFS  290 (454)
T ss_dssp             CCC----CCTTCCEEECCSSCCS
T ss_pred             cCc----ccCcCCEEECcCCccC
Confidence            553    2466777777777653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.82  E-value=5.9e-19  Score=156.51  Aligned_cols=140  Identities=26%  Similarity=0.316  Sum_probs=98.9

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+ +| .++.+++|++|++++|.+.+ +|..   ..+|++|++++|.+++ +| .+.++++|++|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            578899999998875 66 59999999999999999884 5543   3589999999998884 56 5888888888888


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      ++|.+.+ +|...   ++|++|++++|.+. .+|. +..+++|++|++++|.+++ +|..   .++|+.|++++|.++
T Consensus       203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT  270 (454)
T ss_dssp             CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred             CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence            8888774 34322   46777777777666 4553 6666777777777776663 3332   234444444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.82  E-value=2.7e-22  Score=178.18  Aligned_cols=181  Identities=17%  Similarity=0.125  Sum_probs=105.2

Q ss_pred             CCCEEeCCCCCCccC----CchhccCCCCCCEEEccCccCcccC-----CCCCCCCCCCcEEEccCCCCCCC----CCcc
Q 036746          100 FLQKLDLRNNSFTNA----IPPQIGHLRRLQILYLQINSFDGEI-----PASTSNCSNLLVVSLALNHLVGK----IPSE  166 (281)
Q Consensus       100 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~  166 (281)
                      +|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            444444444444321    2333444555555555555554211     11122455666666666665532    3444


Q ss_pred             cCCCCCCcEEeccccccccCCCcccC-----CCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccccCh
Q 036746          167 FGSLSKLQFLSTTANNLIGNIPSSLG-----NLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPP  237 (281)
Q Consensus       167 l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~  237 (281)
                      +..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            55566666777666665432222221     224677777777776644    345556667888888888887755444


Q ss_pred             hccC-----CCCCcEEEcccCcccc----cCChhhhhCCCCCCEEeccCccCC
Q 036746          238 SIFN-----ISSIQTFDVGSTYIEG----EMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       238 ~l~~-----l~~L~~L~l~~n~i~~----~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+..     .++|++|++++|.+++    .+|..+. .+++|++|++++|+++
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCC
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH-hCCCccEEECCCCCCC
Confidence            4432     5688888888888875    5565555 5788888888888774

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=2.6e-19  Score=162.25  Aligned_cols=165  Identities=22%  Similarity=0.303  Sum_probs=142.6

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+. .+|   ..+++|++|++++|.+.+ +|. +..  +|++|++++|.+++ +|.   .+++|++|++
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence            67999999999997 666   457999999999999996 666 655  99999999999995 777   6899999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCC-------CEEEcc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL-------VNLSLV  227 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L-------~~L~l~  227 (281)
                      ++|.+++ +|.   .+++|++|++++|.+.+ +|. +.  ++|++|++++|.++ .+|. +..  +|       +.|+++
T Consensus       148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR  215 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred             CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence            9999995 665   57899999999999985 776 65  89999999999998 7776 554  77       999999


Q ss_pred             cCccccccChhccCCCCCcEEEcccCcccccCChhhh
Q 036746          228 VNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG  264 (281)
Q Consensus       228 ~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~  264 (281)
                      +|.++ .+|..+..+++|+.|++++|++++.+|..+.
T Consensus       216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            99998 6898888899999999999999998887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=2.4e-20  Score=153.86  Aligned_cols=169  Identities=21%  Similarity=0.211  Sum_probs=137.1

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.+++.++.+.+..  .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence            45566778888876443  5778899999999999887 455 68889999999999999984 444 889999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+.+ +|.. .. ++|+.|++++|.+.+ + ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++.
T Consensus        93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCC-cCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence            9999984 4433 33 889999999998875 3 358889999999999999984 44 678899999999999999855


Q ss_pred             cChhccCCCCCcEEEcccCccccc
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGE  258 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~  258 (281)
                        ..+..+++|+.|++++|++.+.
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              6788899999999999998843

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=1.2e-21  Score=174.15  Aligned_cols=208  Identities=14%  Similarity=0.084  Sum_probs=104.6

Q ss_pred             CCcEEEEEcCCCCceeecCccc-----cCCCCCCEEeCCCCCCccC----CchhccCCCCCCEEEccCccCcccCCCCCC
Q 036746           74 YQRVTILDLQNLKLVGTLSPHI-----GNLSFLQKLDLRNNSFTNA----IPPQIGHLRRLQILYLQINSFDGEIPASTS  144 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  144 (281)
                      .++++.|++++|.+.+..+..+     ...++|++|++++|.+.+.    ++..+..+++|++|++++|.+....+..+.
T Consensus       112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  191 (461)
T 1z7x_W          112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC  191 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence            3566667776666553322222     1234566666666665542    233344455666666666655432221111


Q ss_pred             -----CCCCCcEEEccCCCCCCC----CCcccCCCC-----------------------------CCcEEeccccccccC
Q 036746          145 -----NCSNLLVVSLALNHLVGK----IPSEFGSLS-----------------------------KLQFLSTTANNLIGN  186 (281)
Q Consensus       145 -----~l~~L~~L~l~~n~~~~~----~~~~l~~l~-----------------------------~L~~L~l~~n~~~~~  186 (281)
                           ..++|++|++++|.++..    ++..+..++                             +|++|++++|.+...
T Consensus       192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~  271 (461)
T 1z7x_W          192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK  271 (461)
T ss_dssp             HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence                 133455555555544432    233333444                             455555554444322


Q ss_pred             ----CCcccCCCCCCCEEEcccCcCcccCCccCC-----CCCCCCEEEcccCccccc----cChhccCCCCCcEEEcccC
Q 036746          187 ----IPSSLGNLSSLRGLSLSRNGFYGSIPDTFG-----GLKNLVNLSLVVNNLSGT----IPPSIFNISSIQTFDVGST  253 (281)
Q Consensus       187 ----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n  253 (281)
                          ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|
T Consensus       272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence                233344445555555555555432222111     124566666666666543    3445556677777777777


Q ss_pred             cccccCChhhhh----CCCCCCEEeccCccCC
Q 036746          254 YIEGEMPLDLGT----TLPNLRIFSITGNQFT  281 (281)
Q Consensus       254 ~i~~~~p~~~~~----~~~~L~~L~l~~N~lt  281 (281)
                      .+++..+..+..    ..++|++|++++|+++
T Consensus       352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            776544443332    2567777777777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=5.6e-19  Score=145.64  Aligned_cols=148  Identities=22%  Similarity=0.269  Sum_probs=126.6

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      ..+++.|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++ .+|... . ++|++|+
T Consensus        40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLF  112 (263)
T ss_dssp             HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEE
T ss_pred             cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEE
Confidence            378999999999986 445 68899999999999999985 444 889999999999999998 455433 3 9999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+++ + +.+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++
T Consensus       113 L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          113 LDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             ccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            99999985 3 4689999999999999999854 3 688899999999999999865  678899999999999999985


Q ss_pred             c
Q 036746          234 T  234 (281)
Q Consensus       234 ~  234 (281)
                      .
T Consensus       187 ~  187 (263)
T 1xeu_A          187 E  187 (263)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=1.3e-21  Score=177.78  Aligned_cols=123  Identities=20%  Similarity=0.262  Sum_probs=107.6

Q ss_pred             CCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746          148 NLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  227 (281)
                      .|+.|++++|.+++ +|. ++.+++|+.|++++|.+. .+|..++.+++|++|++++|.+++ +| .++.+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            58899999999985 676 899999999999999998 789999999999999999999995 77 88999999999999


Q ss_pred             cCcccccc-ChhccCCCCCcEEEcccCcccccCCh--hhhhCCCCCCEEec
Q 036746          228 VNNLSGTI-PPSIFNISSIQTFDVGSTYIEGEMPL--DLGTTLPNLRIFSI  275 (281)
Q Consensus       228 ~n~l~~~~-p~~l~~l~~L~~L~l~~n~i~~~~p~--~~~~~~~~L~~L~l  275 (281)
                      +|.+++.. |..+..+++|+.|++++|++++..|.  .+...+|+|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999765 89999999999999999999965442  23446899999975

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=8e-18  Score=132.13  Aligned_cols=132  Identities=23%  Similarity=0.267  Sum_probs=114.3

Q ss_pred             CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCC-CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746          102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPA-STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  180 (281)
                      ++++++++.+. .+|..+.  .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78999999986 6776554  3899999999999855443 388999999999999999988888999999999999999


Q ss_pred             cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC
Q 036746          181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP  236 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  236 (281)
                      |.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.++...+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99988777788899999999999999998889999999999999999999886543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=3.2e-18  Score=131.44  Aligned_cols=137  Identities=22%  Similarity=0.201  Sum_probs=88.7

Q ss_pred             CCCCCEEEccCccCc-ccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEE
Q 036746          122 LRRLQILYLQINSFD-GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGL  200 (281)
Q Consensus       122 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  200 (281)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356666666666665 45666666666667777766666643  556666777777777777665556555556777777


Q ss_pred             EcccCcCcccC-CccCCCCCCCCEEEcccCccccccC---hhccCCCCCcEEEcccCcccccCCh
Q 036746          201 SLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLSGTIP---PSIFNISSIQTFDVGSTYIEGEMPL  261 (281)
Q Consensus       201 ~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~i~~~~p~  261 (281)
                      ++++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+. ++|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            77777776321 2566677777777777777764333   36667777777777777766 4443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=2.9e-18  Score=134.63  Aligned_cols=132  Identities=24%  Similarity=0.271  Sum_probs=116.4

Q ss_pred             EEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCch-hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746           78 TILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPP-QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL  156 (281)
Q Consensus        78 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  156 (281)
                      +.++++++++. .+|..+.  .++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            46788888884 6776664  3899999999999865554 488999999999999999988889999999999999999


Q ss_pred             CCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC
Q 036746          157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP  212 (281)
Q Consensus       157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  212 (281)
                      |.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99998878889999999999999999998889999999999999999999986543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=1.6e-19  Score=168.65  Aligned_cols=154  Identities=25%  Similarity=0.291  Sum_probs=119.9

Q ss_pred             ecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCC
Q 036746           90 TLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGS  169 (281)
Q Consensus        90 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  169 (281)
                      ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..++.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            45677889999999999999998 67777779999999999999999 89999999999999999999999 78999999


Q ss_pred             CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCC-CCEEEcccCccccccChhccCCCCCcEE
Q 036746          170 LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN-LVNLSLVVNNLSGTIPPSIFNISSIQTF  248 (281)
Q Consensus       170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~-L~~L~l~~n~l~~~~p~~l~~l~~L~~L  248 (281)
                      +++|++|++++|.+. .+|..+..+++|++|+|++|.+++.+|..+..... ...+++++|.+++.+|..      |+.|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l  364 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI  364 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence            999999999999887 78888999999999999999999888877654321 223678888888777653      4455


Q ss_pred             EcccC
Q 036746          249 DVGST  253 (281)
Q Consensus       249 ~l~~n  253 (281)
                      +++.|
T Consensus       365 ~l~~n  369 (727)
T 4b8c_D          365 EINTD  369 (727)
T ss_dssp             -----
T ss_pred             Eeecc
Confidence            55555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=5.1e-18  Score=130.29  Aligned_cols=134  Identities=22%  Similarity=0.246  Sum_probs=117.2

Q ss_pred             CCCCCcEEEccCCCCC-CCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCE
Q 036746          145 NCSNLLVVSLALNHLV-GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN  223 (281)
Q Consensus       145 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  223 (281)
                      ..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3488999999999998 77888889999999999999998754  77889999999999999999778888888999999


Q ss_pred             EEcccCcccccc-ChhccCCCCCcEEEcccCcccccCCh---hhhhCCCCCCEEeccCccCC
Q 036746          224 LSLVVNNLSGTI-PPSIFNISSIQTFDVGSTYIEGEMPL---DLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       224 L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~i~~~~p~---~~~~~~~~L~~L~l~~N~lt  281 (281)
                      |++++|.+++.. +..+..+++|+.|++++|.+++ +|.   ..+..+++|++|++++|.++
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999998532 2788899999999999999994 554   45558999999999999863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=3.3e-17  Score=128.70  Aligned_cols=128  Identities=22%  Similarity=0.301  Sum_probs=107.7

Q ss_pred             CEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccC
Q 036746          126 QILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRN  205 (281)
Q Consensus       126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  205 (281)
                      ++++++++.++ .+|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57889998888 7777654  68999999999988 67788888999999999999988777777888899999999999


Q ss_pred             cCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccc
Q 036746          206 GFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       206 ~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                      .+++..|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9987777788888999999999999885555567888899999999988764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.73  E-value=8.4e-18  Score=126.46  Aligned_cols=129  Identities=21%  Similarity=0.232  Sum_probs=75.9

Q ss_pred             CCCcEEEccCCCCC-CCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEE
Q 036746          147 SNLLVVSLALNHLV-GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLS  225 (281)
Q Consensus       147 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  225 (281)
                      +++++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            33444444444444 34444444455555555555554432  3455566666666666666654565555667777777


Q ss_pred             cccCccccc-cChhccCCCCCcEEEcccCcccccCC--hhhhhCCCCCCEEeccC
Q 036746          226 LVVNNLSGT-IPPSIFNISSIQTFDVGSTYIEGEMP--LDLGTTLPNLRIFSITG  277 (281)
Q Consensus       226 l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~i~~~~p--~~~~~~~~~L~~L~l~~  277 (281)
                      +++|.+++. .+..+..+++|++|++++|.+++..+  ...+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            777777642 23667777778888888887774333  13444678888887763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=4e-21  Score=174.55  Aligned_cols=178  Identities=18%  Similarity=0.181  Sum_probs=146.5

Q ss_pred             cCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCcc-------------CcccCCCCCCCCCCCcEEE-ccCCCCCC
Q 036746           96 GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINS-------------FDGEIPASTSNCSNLLVVS-LALNHLVG  161 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~  161 (281)
                      ...++|+.|++++|.+. .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56789999999999997 789999999999999998775             4455666777778888887 4544322 


Q ss_pred             CCCc------ccCC--CCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          162 KIPS------EFGS--LSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       162 ~~~~------~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      .++.      .+..  ...|+.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence            1110      0111  1359999999999985 676 999999999999999999 889999999999999999999995


Q ss_pred             ccChhccCCCCCcEEEcccCcccccC-ChhhhhCCCCCCEEeccCccCC
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEM-PLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~-p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                       +| .+..+++|+.|++++|.+++.. |..+. .+++|+.|++++|+|+
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-GCTTCCEEECTTSGGG
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-cCCCCCEEEecCCcCC
Confidence             67 8999999999999999999665 77776 7999999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=1e-17  Score=125.93  Aligned_cols=128  Identities=19%  Similarity=0.178  Sum_probs=92.0

Q ss_pred             CCCCEEEccCccCc-ccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEE
Q 036746          123 RRLQILYLQINSFD-GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLS  201 (281)
Q Consensus       123 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  201 (281)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            55667777777666 56666666777777777777776644  5667777777777777777755666666677888888


Q ss_pred             cccCcCccc-CCccCCCCCCCCEEEcccCccccccC---hhccCCCCCcEEEccc
Q 036746          202 LSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLSGTIP---PSIFNISSIQTFDVGS  252 (281)
Q Consensus       202 l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~  252 (281)
                      +++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.||+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888887753 34677788888888888888875544   4677888888888753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=1.2e-16  Score=123.62  Aligned_cols=134  Identities=19%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             CCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcc
Q 036746          124 RLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLS  203 (281)
Q Consensus       124 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  203 (281)
                      +.+.++++++.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            3578889998888 6676543  789999999999986666677889999999999999886656667889999999999


Q ss_pred             cCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCC
Q 036746          204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMP  260 (281)
Q Consensus       204 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p  260 (281)
                      +|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999986666778889999999999999985555556788999999999999886554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=1.5e-16  Score=124.99  Aligned_cols=127  Identities=28%  Similarity=0.348  Sum_probs=114.8

Q ss_pred             CEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccc
Q 036746          102 QKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTAN  181 (281)
Q Consensus       102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  181 (281)
                      +.++++++.+. .+|..+  .+++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            68999999988 567655  368999999999998 88899999999999999999999877788999999999999999


Q ss_pred             ccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          182 NLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      .+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999877788999999999999999999666667899999999999999885

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=2.1e-16  Score=122.30  Aligned_cols=133  Identities=21%  Similarity=0.240  Sum_probs=113.5

Q ss_pred             CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746          101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  180 (281)
                      .+.++++++.+. .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            478999999888 456544  47999999999999965556678999999999999999966666789999999999999


Q ss_pred             cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC
Q 036746          181 NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP  236 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  236 (281)
                      |.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99987666678899999999999999996556667889999999999999986544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=1.1e-16  Score=123.72  Aligned_cols=133  Identities=18%  Similarity=0.208  Sum_probs=92.9

Q ss_pred             hccCCCCCCEEEccCccCcccCCCCCCCC-CCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCC
Q 036746          118 QIGHLRRLQILYLQINSFDGEIPASTSNC-SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSS  196 (281)
Q Consensus       118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  196 (281)
                      .+..+++|+.|++++|.++ .+|. +..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3556778888888888887 4444 4444 3888888888887743  56777777888888887776443343467777


Q ss_pred             CCEEEcccCcCcccCCc--cCCCCCCCCEEEcccCccccccChh----ccCCCCCcEEEcccCccc
Q 036746          197 LRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGTIPPS----IFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       197 L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~i~  256 (281)
                      |++|++++|.+. .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.||+++|.+.
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777887777775 4554  6667777777777777776 44553    667777777777777665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=9e-19  Score=160.20  Aligned_cols=206  Identities=16%  Similarity=0.116  Sum_probs=118.5

Q ss_pred             cEEEEEcCCCCceeecC-ccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccC-----------ccCccc-CCCC
Q 036746           76 RVTILDLQNLKLVGTLS-PHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQI-----------NSFDGE-IPAS  142 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~  142 (281)
                      +++.|++++|.+.+... ..+..+++|++|+++++...+.++..+..+++|++|++++           +.+++. ++..
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l  373 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL  373 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence            45555555554432221 2234445555555552211111222223455566666652           333321 1111


Q ss_pred             CCCCCCCcEEEccCCCCCCCCCcccCC-CCCCcEEecc----ccccccC-----CCcccCCCCCCCEEEcccCc--Cccc
Q 036746          143 TSNCSNLLVVSLALNHLVGKIPSEFGS-LSKLQFLSTT----ANNLIGN-----IPSSLGNLSSLRGLSLSRNG--FYGS  210 (281)
Q Consensus       143 ~~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--~~~~  210 (281)
                      ...+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|++|++++|.  +++.
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            233566777777666665444444443 6777777775    3444432     11224457788888886433  5544


Q ss_pred             CCccCC-CCCCCCEEEcccCcccc-ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          211 IPDTFG-GLKNLVNLSLVVNNLSG-TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       211 ~p~~~~-~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+..+. .+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++.....+...+++|++|++++|++|
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            333333 37889999999998876 345556788999999999999876655555557899999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.65  E-value=2.4e-17  Score=150.72  Aligned_cols=34  Identities=26%  Similarity=0.266  Sum_probs=14.8

Q ss_pred             CCCCcEEEcccCcccccCChhhhhCCCCCCEEec
Q 036746          242 ISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSI  275 (281)
Q Consensus       242 l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l  275 (281)
                      +++|++|++..|.+++..+..+...+++|+.|++
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l  410 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRL  410 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence            4444444444444444333333333444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.5e-15  Score=129.05  Aligned_cols=197  Identities=13%  Similarity=0.094  Sum_probs=136.7

Q ss_pred             CcEEEEEcCCCCce--------------------eecCccccC--------CCCCCEEeCCCCCCccCCchhccCCCCCC
Q 036746           75 QRVTILDLQNLKLV--------------------GTLSPHIGN--------LSFLQKLDLRNNSFTNAIPPQIGHLRRLQ  126 (281)
Q Consensus        75 ~~l~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  126 (281)
                      ++++.||+++|.+.                    ...+..|.+        +++|+.+++.. .+....+.+|.+|++|+
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence            67888888887765                    112234556        78888888887 67655666788888888


Q ss_pred             EEEccCccCcccCCCCCCCCCCCcEEEccCCCC----CCCCCccc-----------------------------------
Q 036746          127 ILYLQINSFDGEIPASTSNCSNLLVVSLALNHL----VGKIPSEF-----------------------------------  167 (281)
Q Consensus       127 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~l-----------------------------------  167 (281)
                      .+++++|.+....+..|..+.++..+....+..    .......|                                   
T Consensus       128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l  207 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL  207 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred             eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence            888888887755556677766666665444110    00000000                                   


Q ss_pred             ---------------CCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCC-EEEcccCcc
Q 036746          168 ---------------GSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV-NLSLVVNNL  231 (281)
Q Consensus       168 ---------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~-~L~l~~n~l  231 (281)
                                     ..+++|+.+++.+|.+....+..|..+++|+.+++.+| +....+.+|.++++|+ .+++.. .+
T Consensus       208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred             EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence                           02678888888888777555567888888888888887 6645567788888888 888877 66


Q ss_pred             ccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEec
Q 036746          232 SGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSI  275 (281)
Q Consensus       232 ~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l  275 (281)
                      +...+.+|.++++|+.++++.|.++ .++...|.++++|+.+..
T Consensus       286 ~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          286 TAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred             eEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence            6555678888888888888888887 677766778888888753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=2.7e-16  Score=121.60  Aligned_cols=133  Identities=19%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             ccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCc
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQ  174 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  174 (281)
                      +....+|++|++++|.+. .++......++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            334455556666665555 2333222223566666666655532  4455555666666666655533222235555566


Q ss_pred             EEeccccccccCCCc--ccCCCCCCCEEEcccCcCcccCCcc----CCCCCCCCEEEcccCccc
Q 036746          175 FLSTTANNLIGNIPS--SLGNLSSLRGLSLSRNGFYGSIPDT----FGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       175 ~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l~  232 (281)
                      +|++++|.+. .+|.  .+..+++|++|++++|.+. .+|..    +..+++|+.|++++|...
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            6666655553 3333  4555555666666666555 33432    455555666665555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.64  E-value=6.9e-19  Score=138.91  Aligned_cols=135  Identities=24%  Similarity=0.275  Sum_probs=77.0

Q ss_pred             ccCCCCCCEEeCCCCCCccCCch------hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccC
Q 036746           95 IGNLSFLQKLDLRNNSFTNAIPP------QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFG  168 (281)
Q Consensus        95 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  168 (281)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34445566666666666555444      66677777777777777763 55 5666666666666666666 4555555


Q ss_pred             CCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC-ccCCCCCCCCEEEcccCccccc
Q 036746          169 SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       169 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      .+++|++|++++|.+.+ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++.
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            55566666666665553 22 34455555555555555552211 2444555555555555555433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=1.6e-18  Score=136.75  Aligned_cols=155  Identities=17%  Similarity=0.199  Sum_probs=106.0

Q ss_pred             ccCCCCCCEEEccCccCcccCCC------CCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccC
Q 036746          119 IGHLRRLQILYLQINSFDGEIPA------STSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLG  192 (281)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~  192 (281)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            34455666667777776666655      67777788888888887774 55 6777778888888887776 5666566


Q ss_pred             CCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC-hhccCCCCCcEEEcccCcccccCCh---------h
Q 036746          193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP-PSIFNISSIQTFDVGSTYIEGEMPL---------D  262 (281)
Q Consensus       193 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~i~~~~p~---------~  262 (281)
                      .+++|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+.+|.         .
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  168 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE  168 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence            66778888888887774 44 46667778888888887764221 3567777888888888877655443         1


Q ss_pred             hhhCCCCCCEEeccCccC
Q 036746          263 LGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       263 ~~~~~~~L~~L~l~~N~l  280 (281)
                      ++..+++|+.||  +|++
T Consensus       169 ~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          169 VVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HHHHCSSCSEEC--CGGG
T ss_pred             HHHhCCCcEEEC--Cccc
Confidence            234677888776  5544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=1.1e-14  Score=111.87  Aligned_cols=108  Identities=20%  Similarity=0.179  Sum_probs=91.2

Q ss_pred             CCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746          148 NLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       148 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  227 (281)
                      ..+.+++++|.+. .+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+.++++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999999988 5676553  789999999999987778888999999999999999986666778899999999999


Q ss_pred             cCccccccChhccCCCCCcEEEcccCccccc
Q 036746          228 VNNLSGTIPPSIFNISSIQTFDVGSTYIEGE  258 (281)
Q Consensus       228 ~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~  258 (281)
                      +|++++..+..+..+++|+.|++++|++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999866566788899999999999988743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=8.5e-15  Score=124.43  Aligned_cols=202  Identities=17%  Similarity=0.182  Sum_probs=150.2

Q ss_pred             CcEEEEEcCCCCceeecCccccC-CCCCCEEeCCCCCCc--------------------cCCchhccC--------CCCC
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGN-LSFLQKLDLRNNSFT--------------------NAIPPQIGH--------LRRL  125 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~-l~~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L  125 (281)
                      .+++.|.++++ +...-...+.. +++|+.|+|++|.+.                    ...+..|.+        +++|
T Consensus        25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L  103 (329)
T 3sb4_A           25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL  103 (329)
T ss_dssp             HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred             CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence            45677776643 11111112333 788999999999887                    123346677        9999


Q ss_pred             CEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecccccc----ccCCCccc----------
Q 036746          126 QILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNL----IGNIPSSL----------  191 (281)
Q Consensus       126 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l----------  191 (281)
                      +.+++.+ .++..-+..|.++++|+.+++.+|.+....+..|..+.++..+....+..    .......+          
T Consensus       104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i  182 (329)
T 3sb4_A          104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI  182 (329)
T ss_dssp             CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred             cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence            9999999 88755566899999999999999998866677888888777777654211    00000000          


Q ss_pred             ----------------------------------------CCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcc
Q 036746          192 ----------------------------------------GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNL  231 (281)
Q Consensus       192 ----------------------------------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l  231 (281)
                                                              ..+++|+.+++.+|.++...+..|.++++|+++++.+| +
T Consensus       183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i  261 (329)
T 3sb4_A          183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L  261 (329)
T ss_dssp             EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence                                                    02679999999999998666678999999999999998 7


Q ss_pred             ccccChhccCCCCCc-EEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          232 SGTIPPSIFNISSIQ-TFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       232 ~~~~p~~l~~l~~L~-~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +...+.+|.++++|+ .+++.+ .++ .++...|.+|++|+.+++++|+++
T Consensus       262 ~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          262 KTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             CEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCC
T ss_pred             ceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccC
Confidence            656677899999999 999998 677 677777779999999999988764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.57  E-value=2.4e-14  Score=110.41  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=89.5

Q ss_pred             CcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEccc
Q 036746          149 LLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV  228 (281)
Q Consensus       149 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  228 (281)
                      -+.+++++|.+. .+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+.++++|+.|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368899999987 6777664  7899999999999877788899999999999999999865556678899999999999


Q ss_pred             CccccccChhccCCCCCcEEEcccCcccc
Q 036746          229 NNLSGTIPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       229 n~l~~~~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                      |++++..+..+..+++|+.|++++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99985555568889999999999999883

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=2.4e-17  Score=150.74  Aligned_cols=205  Identities=15%  Similarity=0.119  Sum_probs=135.9

Q ss_pred             CcEEEEEcCCCCceeec-CccccCCCCCCEEeCCCCCCccC-CchhccCCCCCCEEEccC---------ccCcccCCCCC
Q 036746           75 QRVTILDLQNLKLVGTL-SPHIGNLSFLQKLDLRNNSFTNA-IPPQIGHLRRLQILYLQI---------NSFDGEIPAST  143 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~  143 (281)
                      ++++.|++++|.+.+.. +..+..+++|++|++++| +... ++.....+++|++|++++         +.+++.....+
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l  367 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV  367 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence            67888888888765432 223457788888888877 3321 222233578888888833         33332211112


Q ss_pred             -CCCCCCcEEEccCCCCCCCCCcccC-CCCCCcEEecc--c----cccccC-----CCcccCCCCCCCEEEcccCcCccc
Q 036746          144 -SNCSNLLVVSLALNHLVGKIPSEFG-SLSKLQFLSTT--A----NNLIGN-----IPSSLGNLSSLRGLSLSRNGFYGS  210 (281)
Q Consensus       144 -~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~  210 (281)
                       ..+++|++|.+..+.++......+. .+++|+.|+++  +    +.++..     ++..+..+++|+.|++++ .+++.
T Consensus       368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence             2368888888887877654444443 47889999998  3    333311     111245677899999977 56555


Q ss_pred             CCccCCC-CCCCCEEEcccCccccccChhc-cCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          211 IPDTFGG-LKNLVNLSLVVNNLSGTIPPSI-FNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       211 ~p~~~~~-l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.....+...+++|+.|++++|+++
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            4444444 7889999999999876555554 668999999999999876555555556899999999999863

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=1e-13  Score=106.44  Aligned_cols=105  Identities=26%  Similarity=0.268  Sum_probs=62.9

Q ss_pred             CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccc
Q 036746          101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTA  180 (281)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  180 (281)
                      .+.+++++|.+. .+|..+  .++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            356667766666 345443  25666666666666655555666666666666666666644444455666666666666


Q ss_pred             cccccCCCcccCCCCCCCEEEcccCcCc
Q 036746          181 NNLIGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      |.+.+..+..+..+++|++|++++|++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6665444444556666666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=1.3e-13  Score=106.24  Aligned_cols=106  Identities=23%  Similarity=0.247  Sum_probs=94.6

Q ss_pred             CCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEccc
Q 036746          125 LQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSR  204 (281)
Q Consensus       125 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  204 (281)
                      -+.+++++|.+. .+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999997 8888775  8999999999999988888999999999999999999865556678999999999999


Q ss_pred             CcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       205 n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      |.+.+..+..+..+++|+.|++++|.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99996656669999999999999999873

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.51  E-value=5.2e-16  Score=141.88  Aligned_cols=201  Identities=14%  Similarity=0.143  Sum_probs=132.0

Q ss_pred             CcEEEEEcCCCCceeecCcccc-CCCCCCEEeCCCC-CCccC-CchhccCCCCCCEEEccCccCcccCC----CCCCCCC
Q 036746           75 QRVTILDLQNLKLVGTLSPHIG-NLSFLQKLDLRNN-SFTNA-IPPQIGHLRRLQILYLQINSFDGEIP----ASTSNCS  147 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~  147 (281)
                      ++++.|+++++.+.+..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+    .....++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            6788999998888776666564 6889999999988 44422 34444578899999999988764333    2334677


Q ss_pred             CCcEEEccCCC--CCC-CCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCc------------------
Q 036746          148 NLLVVSLALNH--LVG-KIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG------------------  206 (281)
Q Consensus       148 ~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~------------------  206 (281)
                      +|++|++++|.  +.. .++.....+++|+.|++++|...+.++..+..+++|++|+++.+.                  
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~  264 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC  264 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence            89999998886  211 111223446889999998873322355556666777777755442                  


Q ss_pred             --------Cc----ccCCccCCCCCCCCEEEcccCcccccc-ChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEE
Q 036746          207 --------FY----GSIPDTFGGLKNLVNLSLVVNNLSGTI-PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIF  273 (281)
Q Consensus       207 --------~~----~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L  273 (281)
                              +.    +.++..+..+++|++|++++|.+++.. +..+..+++|++|++++| +.+.....+...+++|++|
T Consensus       265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence                    11    122333335678888888888876432 233557788888888887 5544334454468888888


Q ss_pred             ecc
Q 036746          274 SIT  276 (281)
Q Consensus       274 ~l~  276 (281)
                      +++
T Consensus       344 ~L~  346 (594)
T 2p1m_B          344 RVF  346 (594)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            883

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=3.5e-12  Score=111.08  Aligned_cols=193  Identities=10%  Similarity=0.073  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746           77 VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL  156 (281)
Q Consensus        77 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  156 (281)
                      ++.+.+.. .+...-+..|.++.+|+.+++..|.+.......|. +.+|+.+.+..+ ++..-...|.++++|+.+++..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            44555543 33333344556666666666666555533333333 355555555532 3323334455555555555544


Q ss_pred             CCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc-----ccCCccCCCCCCCCEEEcccCcc
Q 036746          157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY-----GSIPDTFGGLKNLVNLSLVVNNL  231 (281)
Q Consensus       157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~p~~~~~l~~L~~L~l~~n~l  231 (281)
                      + +...-...|.. .+|+.+.+.. .+.......|..+++|+.+.+.+|.+.     ...+..|.++++|+.+.+. +.+
T Consensus       236 ~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i  311 (401)
T 4fdw_A          236 N-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI  311 (401)
T ss_dssp             T-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred             C-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence            3 22122223333 3444444422 222222344555555555555554432     1223445555555555554 224


Q ss_pred             ccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746          232 SGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       232 ~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      +..-..+|.++++|+.+++..+ ++ .+....|.++ +|+.+++++|.
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred             EEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence            3333344555555555555333 33 3444444444 55555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.44  E-value=1.2e-15  Score=131.74  Aligned_cols=165  Identities=18%  Similarity=0.152  Sum_probs=87.1

Q ss_pred             CCCCEEeCCCCCCccCCchhc----c-CCCCCCEEEccCccCcccCCCCC-CCCCCCcEEEccCCCCCCCCCccc-----
Q 036746           99 SFLQKLDLRNNSFTNAIPPQI----G-HLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHLVGKIPSEF-----  167 (281)
Q Consensus        99 ~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l-----  167 (281)
                      ++|++|++++|.+.......+    . ..++|+.|++++|.+.......+ ..+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            455566666665543222221    1 12456666666666543211111 123456666666666553222222     


Q ss_pred             CCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc----c
Q 036746          168 GSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----I  235 (281)
Q Consensus       168 ~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~  235 (281)
                      ...++|++|++++|.+...    ++..+...++|++|++++|.+.+.    ++..+...++|++|++++|.+++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2345666777766665431    233345566677777777776532    234455566777777777777642    2


Q ss_pred             ChhccCCCCCcEEEcccCcccccCChhh
Q 036746          236 PPSIFNISSIQTFDVGSTYIEGEMPLDL  263 (281)
Q Consensus       236 p~~l~~l~~L~~L~l~~n~i~~~~p~~~  263 (281)
                      +..+...++|++|++++|.|++.....+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            3334455677777777777765433333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.44  E-value=1.5e-15  Score=131.05  Aligned_cols=160  Identities=18%  Similarity=0.159  Sum_probs=119.3

Q ss_pred             CCCCCEEEccCccCcccCCCC----CC-CCCCCcEEEccCCCCCCCCCccc-CCCCCCcEEeccccccccCCCccc----
Q 036746          122 LRRLQILYLQINSFDGEIPAS----TS-NCSNLLVVSLALNHLVGKIPSEF-GSLSKLQFLSTTANNLIGNIPSSL----  191 (281)
Q Consensus       122 l~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l----  191 (281)
                      +++|+.|++++|.++......    +. ..++|++|++++|.+.......+ ..+++|+.|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            568999999999987432222    22 33799999999999874322222 235689999999998864433333    


Q ss_pred             -CCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc----cChhccCCCCCcEEEcccCcccccCChh
Q 036746          192 -GNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----IPPSIFNISSIQTFDVGSTYIEGEMPLD  262 (281)
Q Consensus       192 -~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~i~~~~p~~  262 (281)
                       ...++|++|++++|.+++.    ++..+...++|++|++++|.+++.    ++..+...++|++|++++|.|++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3467899999999999743    445557789999999999999753    3556777889999999999998643333


Q ss_pred             hh---hCCCCCCEEeccCccCC
Q 036746          263 LG---TTLPNLRIFSITGNQFT  281 (281)
Q Consensus       263 ~~---~~~~~L~~L~l~~N~lt  281 (281)
                      +.   ..+++|++|++++|+|+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            32   25789999999999985

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=1e-12  Score=112.24  Aligned_cols=105  Identities=19%  Similarity=0.183  Sum_probs=82.2

Q ss_pred             cEEEccCC-CCCCCCCcccCCCCCCcEEeccc-cccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcc
Q 036746          150 LVVSLALN-HLVGKIPSEFGSLSKLQFLSTTA-NNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV  227 (281)
Q Consensus       150 ~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  227 (281)
                      ..++++++ .++ .+|. +..+++|+.|++++ |.+.+..+..|..+++|++|+|++|.+++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 777 5777 88888888888885 88876666778888888888888888887777888888888888888


Q ss_pred             cCccccccChhccCCCCCcEEEcccCcccc
Q 036746          228 VNNLSGTIPPSIFNISSIQTFDVGSTYIEG  257 (281)
Q Consensus       228 ~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~  257 (281)
                      +|++++..+..+..++ |+.|++.+|++..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            8888854444454444 8888888888873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.40  E-value=1.3e-11  Score=107.40  Aligned_cols=193  Identities=16%  Similarity=0.107  Sum_probs=135.4

Q ss_pred             cEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc
Q 036746           76 RVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA  155 (281)
Q Consensus        76 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  155 (281)
                      +++.+.+..+ +...-...|.+ ..|+.+.+.. .+......+|.+|++|+.+++.+|.++ .++.......+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeC
Confidence            3455555443 33333344555 3577777775 455445567888888888888888887 444433336788888887


Q ss_pred             CCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccc---
Q 036746          156 LNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS---  232 (281)
Q Consensus       156 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~---  232 (281)
                      .+ +...-...|..+++|+.+.+..+ +.......|.. .+|+.+.+ .+.+......+|.++++|+.+.+.+|.+.   
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~  287 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP  287 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence            44 55455667888888998888764 33233445655 68888888 44566455678899999999999887764   


Q ss_pred             --cccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCc
Q 036746          233 --GTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       233 --~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                        ...+.+|.++++|+.+++.. .++ .++...|.+|++|+.+++..|
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT
T ss_pred             ccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc
Confidence              34567888999999999984 466 677777778999999999654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=1.5e-12  Score=111.16  Aligned_cols=104  Identities=23%  Similarity=0.189  Sum_probs=91.7

Q ss_pred             CEEEccCc-cCcccCCCCCCCCCCCcEEEccC-CCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcc
Q 036746          126 QILYLQIN-SFDGEIPASTSNCSNLLVVSLAL-NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLS  203 (281)
Q Consensus       126 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  203 (281)
                      ..++.+++ .++ .+|. +..+++|++|++++ |.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35788887 888 7888 99999999999996 99997777889999999999999999998888889999999999999


Q ss_pred             cCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       204 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      +|.+++..+..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999965555666565 999999999987

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.26  E-value=2.8e-12  Score=109.95  Aligned_cols=200  Identities=13%  Similarity=0.167  Sum_probs=126.1

Q ss_pred             CcEEEEEcCCCCcee-e-------cCccccCCCCCCEEeCCCCCCc---------cCCchhccCCCCCCEEEccCccCcc
Q 036746           75 QRVTILDLQNLKLVG-T-------LSPHIGNLSFLQKLDLRNNSFT---------NAIPPQIGHLRRLQILYLQINSFDG  137 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~  137 (281)
                      .+++.|.+....+.+ .       +..+...+++|+.|.+......         +.+...+..+|+|+.|++++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            567788877665442 1       2334556789999998765331         124455677899999999887322 


Q ss_pred             cCCCCCCCCCCCcEEEccCCCCCCCCCccc--CCCCCCcEEeccc--cccccC-----CCccc--CCCCCCCEEEcccCc
Q 036746          138 EIPASTSNCSNLLVVSLALNHLVGKIPSEF--GSLSKLQFLSTTA--NNLIGN-----IPSSL--GNLSSLRGLSLSRNG  206 (281)
Q Consensus       138 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~--n~~~~~-----~~~~l--~~l~~L~~L~l~~n~  206 (281)
                      .++. + .+++|++|++..+.+.......+  ..+|+|+.|+++.  +...+.     +...+  ..+++|++|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            3444 3 37899999998887753322233  3688999998853  221111     11122  246789999998888


Q ss_pred             CcccCCccC---CCCCCCCEEEcccCcccccc----ChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746          207 FYGSIPDTF---GGLKNLVNLSLVVNNLSGTI----PPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       207 ~~~~~p~~~---~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      +.+..+..+   ..+++|+.|+++.|.+++..    +..+..+++|+.|++++|.|++..-..+...+  ...+++++++
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            864333222   24678999999888887642    23334568899999998888754444443212  3557777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.18  E-value=1.8e-11  Score=104.97  Aligned_cols=180  Identities=13%  Similarity=0.162  Sum_probs=120.2

Q ss_pred             CCCCEEeCCCCCCcc-CC-------chhccCCCCCCEEEccCccCc---------ccCCCCCCCCCCCcEEEccCCCCCC
Q 036746           99 SFLQKLDLRNNSFTN-AI-------PPQIGHLRRLQILYLQINSFD---------GEIPASTSNCSNLLVVSLALNHLVG  161 (281)
Q Consensus        99 ~~L~~L~l~~n~l~~-~~-------~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~~~~  161 (281)
                      ..++.|.+......+ ..       ..++..+++|+.|.+......         +.+...+..+++|+.|.+++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            457788888655442 11       223456789999999764331         112233456799999999887321 


Q ss_pred             CCCcccCCCCCCcEEeccccccccCCCccc--CCCCCCCEEEccc--CcCccc-----CCccC--CCCCCCCEEEcccCc
Q 036746          162 KIPSEFGSLSKLQFLSTTANNLIGNIPSSL--GNLSSLRGLSLSR--NGFYGS-----IPDTF--GGLKNLVNLSLVVNN  230 (281)
Q Consensus       162 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~--n~~~~~-----~p~~~--~~l~~L~~L~l~~n~  230 (281)
                      .++. + .+++|+.|++..+.+.......+  ..+++|++|+|+.  |...+.     +...+  ..+++|+.|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            3333 3 37899999999887654322333  3688999999863  221111     11222  357999999999999


Q ss_pred             cccccChhcc---CCCCCcEEEcccCcccccCChhhh---hCCCCCCEEeccCccCC
Q 036746          231 LSGTIPPSIF---NISSIQTFDVGSTYIEGEMPLDLG---TTLPNLRIFSITGNQFT  281 (281)
Q Consensus       231 l~~~~p~~l~---~l~~L~~L~l~~n~i~~~~p~~~~---~~~~~L~~L~l~~N~lt  281 (281)
                      +.+..+..+.   .+++|++|+|+.|.+.+..+..+.   ..+++|+.|++++|.++
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            8765444443   468999999999999875444443   24799999999999885

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.76  E-value=1.1e-09  Score=84.89  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             CCCCCCCCcEEEccCC-CCCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc--
Q 036746          142 STSNCSNLLVVSLALN-HLVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS--  210 (281)
Q Consensus       142 ~~~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~--  210 (281)
                      .+...++|++|++++| .+...    +...+...++|++|++++|.+...    +...+...++|++|++++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445566777777766 65521    223344455666666666655422    122233334566666666655432  


Q ss_pred             --CCccCCCCCCCCEEEc--ccCccccc----cChhccCCCCCcEEEcccCccc
Q 036746          211 --IPDTFGGLKNLVNLSL--VVNNLSGT----IPPSIFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       211 --~p~~~~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~i~  256 (281)
                        +...+...++|++|++  ++|.+.+.    +...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              2334444455555555  55555432    1223333455555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.67  E-value=5.1e-07  Score=78.25  Aligned_cols=194  Identities=13%  Similarity=0.049  Sum_probs=114.2

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCc------------------
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFD------------------  136 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------  136 (281)
                      .+++.+.+.++. ...-...|.++.+|+.+.+..+ +.......|.++..|+.+.+..+...                  
T Consensus       162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~  239 (394)
T 4fs7_A          162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD  239 (394)
T ss_dssp             TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT
T ss_pred             CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECC
Confidence            567788886543 2233456778888888888765 33334456666777776665543321                  


Q ss_pred             ---ccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCc
Q 036746          137 ---GEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPD  213 (281)
Q Consensus       137 ---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  213 (281)
                         ..-...+..+..++.+.+..+... .....+..+..++.+....+.+.   ...+..+.+|+.+.+..+ +......
T Consensus       240 ~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~  314 (394)
T 4fs7_A          240 SFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEE  314 (394)
T ss_dssp             TCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTT
T ss_pred             CceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechh
Confidence               011123344445555555443222 22334444555555544433211   134556677777777654 4434456


Q ss_pred             cCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCc
Q 036746          214 TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       214 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      +|.++++|+.+++..+ ++..-..+|.++.+|+.+++..+ ++ .+....|.+|++|+.+++..+
T Consensus       315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            6777888888888643 55444567778888888888766 55 566666668888888887654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.67  E-value=3e-11  Score=98.72  Aligned_cols=22  Identities=9%  Similarity=-0.061  Sum_probs=15.1

Q ss_pred             CCCcccceEecCCCCcEEEEEc
Q 036746           61 HFCQWYGVTCSPRYQRVTILDL   82 (281)
Q Consensus        61 ~~c~~~~~~~~~~~~~l~~L~l   82 (281)
                      ..|.|.|+.|.+...++..+..
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~   97 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIIN   97 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEE
T ss_pred             HHHhcCcEEECCCCCEEEEEEe
Confidence            4578889988866556655544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.65  E-value=2.6e-09  Score=82.82  Aligned_cols=113  Identities=12%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             cCCCCCCcEEecccc-ccccC----CCcccCCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc---
Q 036746          167 FGSLSKLQFLSTTAN-NLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT---  234 (281)
Q Consensus       167 l~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~---  234 (281)
                      +...+.|++|++++| .+...    +...+...++|++|++++|.+...    +...+...++|++|++++|.+.+.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344455555555554 44321    222333444555555555555422    122233334455555555555432   


Q ss_pred             -cChhccCCCCCcEEEc--ccCcccccCChhh---hhCCCCCCEEeccCcc
Q 036746          235 -IPPSIFNISSIQTFDV--GSTYIEGEMPLDL---GTTLPNLRIFSITGNQ  279 (281)
Q Consensus       235 -~p~~l~~l~~L~~L~l--~~n~i~~~~p~~~---~~~~~~L~~L~l~~N~  279 (281)
                       +...+...++|++|++  ++|.|.......+   ....++|++|++++|.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence             2233344445555555  4455543221111   1133455555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.62  E-value=2.1e-06  Score=74.36  Aligned_cols=86  Identities=12%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             ccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746          190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       190 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~  269 (281)
                      .+..++.|+.+.+. +.+.......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++ .+....|.+|++
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~  358 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTA  358 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTT
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCC
Confidence            34445555555554 2333233456777888888888654 54344567888888888888654 55 677777778888


Q ss_pred             CCEEeccCcc
Q 036746          270 LRIFSITGNQ  279 (281)
Q Consensus       270 L~~L~l~~N~  279 (281)
                      |+.+++.++.
T Consensus       359 L~~i~~~~~~  368 (394)
T 4gt6_A          359 LNNIEYSGSR  368 (394)
T ss_dssp             CCEEEESSCH
T ss_pred             CCEEEECCce
Confidence            8888887764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=7.1e-08  Score=78.74  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=57.5

Q ss_pred             CCCCCCCEEEcccCcCcc--cCCccCCCCCCCCEEEcccCccccccChhccCCC--CCcEEEcccCcccccCCh------
Q 036746          192 GNLSSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNIS--SIQTFDVGSTYIEGEMPL------  261 (281)
Q Consensus       192 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~l~~n~i~~~~p~------  261 (281)
                      ..+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|++|++++|++.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            346678888888888875  3455566788888888888888753  2233333  888888888888876652      


Q ss_pred             hhhhCCCCCCEEe
Q 036746          262 DLGTTLPNLRIFS  274 (281)
Q Consensus       262 ~~~~~~~~L~~L~  274 (281)
                      .+...+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2445788888886

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.50  E-value=3.8e-06  Score=72.67  Aligned_cols=178  Identities=15%  Similarity=0.050  Sum_probs=114.1

Q ss_pred             CccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCC-----------
Q 036746           92 SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV-----------  160 (281)
Q Consensus        92 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-----------  160 (281)
                      ...|.++.+|+.+.+..+. .......|.++.+|+.+++..+ ++..-...+.++..|+.+.+..+...           
T Consensus       155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l  232 (394)
T 4fs7_A          155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV  232 (394)
T ss_dssp             TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred             hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence            3568889999999998654 3245567889999999999776 44344556777777776665543221           


Q ss_pred             ----------CCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCc
Q 036746          161 ----------GKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       161 ----------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~  230 (281)
                                ......+..+..++.+.+..+... .....+..+..++.+....+.+   ....+..+.+|+.+.+..+ 
T Consensus       233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-  307 (394)
T 4fs7_A          233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-  307 (394)
T ss_dssp             CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-
T ss_pred             ceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-
Confidence                      011122334444555544433221 2223344555555555444321   2345677888999988654 


Q ss_pred             cccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCc
Q 036746          231 LSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       231 l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      ++..-..++.++.+|+.+++..+ ++ .+....|.+|.+|+.+++..|
T Consensus       308 i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          308 VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred             cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence            55455677889999999999754 55 677777778999999999765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.44  E-value=9.7e-06  Score=70.11  Aligned_cols=84  Identities=11%  Similarity=0.112  Sum_probs=51.7

Q ss_pred             cCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCC
Q 036746          191 LGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL  270 (281)
Q Consensus       191 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L  270 (281)
                      |..+..|+.+.+..+... .....+.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++ .+....|.+|.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCC
Confidence            334445555555443222 333455666677777764 3444344566778888888888764 45 5666666688888


Q ss_pred             CEEeccCc
Q 036746          271 RIFSITGN  278 (281)
Q Consensus       271 ~~L~l~~N  278 (281)
                      +.+.+..+
T Consensus       337 ~~i~ip~s  344 (394)
T 4gt6_A          337 ERIAIPSS  344 (394)
T ss_dssp             CEEEECTT
T ss_pred             CEEEECcc
Confidence            88888644

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.38  E-value=2.1e-07  Score=70.83  Aligned_cols=109  Identities=11%  Similarity=0.189  Sum_probs=69.9

Q ss_pred             CCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCc-CcccCCccCCCC----CCCCEEEcccCc-cccccC
Q 036746          163 IPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGL----KNLVNLSLVVNN-LSGTIP  236 (281)
Q Consensus       163 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p  236 (281)
                      +|.....-.+|+.|+++++.++..--..+..+++|++|++++|. +++.--..+..+    ++|++|++++|. +++..-
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34433334578888888887765544556778888888888885 554433344443    368888888874 776555


Q ss_pred             hhccCCCCCcEEEcccCc-cccc--CChhhhhCCCCCC
Q 036746          237 PSIFNISSIQTFDVGSTY-IEGE--MPLDLGTTLPNLR  271 (281)
Q Consensus       237 ~~l~~l~~L~~L~l~~n~-i~~~--~p~~~~~~~~~L~  271 (281)
                      ..+..+++|++|+++++. +++.  ....+...+|+++
T Consensus       133 ~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             HHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            667778888888888874 5532  1122334566654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.26  E-value=5.5e-05  Score=64.91  Aligned_cols=128  Identities=13%  Similarity=0.103  Sum_probs=58.0

Q ss_pred             CCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCE
Q 036746          144 SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN  223 (281)
Q Consensus       144 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~  223 (281)
                      ....+|+.+.+..+ +.......+..+..|+.+.+..+ +.......+..+.+|+.+.+..+ +.......|.++++|+.
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            34444555544332 22122334445555555555433 22122233444555555555432 22222334555555555


Q ss_pred             EEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEecc
Q 036746          224 LSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSIT  276 (281)
Q Consensus       224 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~  276 (281)
                      +.+..+.++..-..+|.++.+|+.+++..+ ++ .+....|.+|.+|+.+.+.
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence            555555554333445555555555555433 33 3444444455555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.20  E-value=5.1e-07  Score=68.69  Aligned_cols=83  Identities=11%  Similarity=0.040  Sum_probs=37.6

Q ss_pred             CCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccc-cccCCCcccCCC----CCCCEEEcccCc-CcccCCccCCCCCC
Q 036746          147 SNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN-LIGNIPSSLGNL----SSLRGLSLSRNG-FYGSIPDTFGGLKN  220 (281)
Q Consensus       147 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~p~~~~~l~~  220 (281)
                      .+|++|+++++.++..--..+..+++|+.|++++|. ++...-..+..+    ++|++|++++|. +++.--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            345555555555443333334555555555555553 221111222222    245555555553 44332233444555


Q ss_pred             CCEEEcccC
Q 036746          221 LVNLSLVVN  229 (281)
Q Consensus       221 L~~L~l~~n  229 (281)
                      |+.|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.19  E-value=4.9e-05  Score=65.19  Aligned_cols=146  Identities=11%  Similarity=-0.007  Sum_probs=104.2

Q ss_pred             hccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCC
Q 036746          118 QIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL  197 (281)
Q Consensus       118 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  197 (281)
                      .+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ +...-...+..+.+|+.+.+..+ +.......|..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            4455667777777554 33244556788899999998765 44344567888899999988654 332334568888999


Q ss_pred             CEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCC
Q 036746          198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPN  269 (281)
Q Consensus       198 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~  269 (281)
                      +.+.+.++.+.......|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++ .+....|.++..
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c~~  357 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAFEGSSI  357 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTSSC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhCCCC
Confidence            99999988887556678899999999999654 55455567889999999988655 55 555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.59  E-value=9.6e-05  Score=53.36  Aligned_cols=56  Identities=23%  Similarity=0.345  Sum_probs=27.2

Q ss_pred             EEEcccCcCc-ccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccc
Q 036746          199 GLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       199 ~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~  256 (281)
                      .++-++++++ ..+|..+.  ++++.|+|++|+++...+..+..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455555543 23343221  24555555555555333344455555555555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.52  E-value=2.2e-05  Score=60.74  Aligned_cols=112  Identities=11%  Similarity=0.044  Sum_probs=57.5

Q ss_pred             CCCCCCcEEEccCC-CCCC----CCCcccCCCCCCcEEeccccccccCC----CcccCCCCCCCEEEcccCcCccc----
Q 036746          144 SNCSNLLVVSLALN-HLVG----KIPSEFGSLSKLQFLSTTANNLIGNI----PSSLGNLSSLRGLSLSRNGFYGS----  210 (281)
Q Consensus       144 ~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~----  210 (281)
                      .+-+.|++|++++| .+..    .+...+..-..|+.|++++|.+....    .+.+..-+.|++|+|++|.|.+.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34566777777764 5542    12233444556666666666664322    22233335666666666666532    


Q ss_pred             CCccCCCCCCCCEEEcccC---cccc----ccChhccCCCCCcEEEcccCcc
Q 036746          211 IPDTFGGLKNLVNLSLVVN---NLSG----TIPPSIFNISSIQTFDVGSTYI  255 (281)
Q Consensus       211 ~p~~~~~l~~L~~L~l~~n---~l~~----~~p~~l~~l~~L~~L~l~~n~i  255 (281)
                      +-+.+..-+.|++|++++|   .+..    .+...+..-++|+.|+++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            2334444555666666543   2221    1223344445666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.38  E-value=2.4e-05  Score=60.58  Aligned_cols=17  Identities=24%  Similarity=0.214  Sum_probs=8.0

Q ss_pred             CCCCCCcEEEccCCCCC
Q 036746          144 SNCSNLLVVSLALNHLV  160 (281)
Q Consensus       144 ~~l~~L~~L~l~~n~~~  160 (281)
                      ..-+.|+.|++++|.+.
T Consensus        67 ~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             TTCSCCCEEECTTSCCB
T ss_pred             hhCCCcCEEEccCCCCC
Confidence            33444555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.81  E-value=0.0027  Score=45.59  Aligned_cols=55  Identities=22%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             EEEcCCCCce-eecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccC
Q 036746           79 ILDLQNLKLV-GTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSF  135 (281)
Q Consensus        79 ~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  135 (281)
                      .++.++++++ ..+|..+.  ++|++|+|++|.+....+..|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555565553 23443322  3466666666666644444555566666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 8e-20
 Identities = 64/281 (22%), Positives = 95/281 (33%), Gaps = 33/281 (11%)

Query: 31  NETDRAALLEFKSKITNDALGVLGSWNDSIHFCQ--WYGVTCSP--RYQRVTILDLQNLK 86
           N  D+ ALL+ K  + N     L SW  +   C   W GV C    +  RV  LDL  L 
Sbjct: 4   NPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 87  LVG--TLSPHIGNLSFLQKLDLRNN-SFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST 143
           L     +   + NL +L  L +    +    IPP I  L +L  LY+   +  G IP   
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 144 SNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSL------ 197
           S    L+ +  + N L G +P    SL  L  ++   N + G IP S G+ S L      
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 198 -----------------RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIF 240
                                               G         +  N        + 
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 241 NISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
              ++   D+ +  I G +P  L   L  L   +++ N   
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLC 281

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.2 bits (126), Expect = 8e-09
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 5/188 (2%)

Query: 53  LGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQK-LDLRNNSF 111
           L + + S +               +  +     ++ G +    G+ S L   + +  N  
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 112 TNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLS 171
           T  IPP   +L    +   +            S+ +   +     +              
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246

Query: 172 KLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN- 230
               L    N + G +P  L  L  L  L++S N   G IP   G L+     +   N  
Sbjct: 247 NGLDLRN--NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

Query: 231 LSGTIPPS 238
           L G+  P+
Sbjct: 304 LCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 4e-06
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 202 LSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDV 250
           L  N  YG++P     LK L +L++  NNL G I P   N+        
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAY 298

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.5 bits (166), Expect = 8e-14
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 14/195 (7%)

Query: 56  WNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI 115
            +      Q   +T       +  L L   +L       + +L+ L  LDL NN  +N  
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 257

Query: 116 PPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQF 175
           P  +  L +L  L L  N      P   +  + L  + L  N    +  S   +L  L +
Sbjct: 258 P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTY 311

Query: 176 LSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235
           L+   NN+    P  + +L+ L+ L  + N    S   +   L N+  LS   N +S   
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLT 367

Query: 236 PPSIFNISSIQTFDV 250
           P  + N++ I    +
Sbjct: 368 P--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 1e-09
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 28/167 (16%)

Query: 59  SIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIP-- 116
           S++  Q   +        +T LDL N ++       +  L+ L +L L  N  +N  P  
Sbjct: 225 SLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLA 282

Query: 117 ------------------PQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNH 158
                               I +L+ L  L L  N+     P S  + + L  +  A N 
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNK 340

Query: 159 LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRN 205
           +     S   +L+ + +LS   N +    P  L NL+ +  L L+  
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 15/188 (7%)

Query: 94  HIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS 153
            +  L+ L+ L   NN  ++  P  I     L  L L  N        + ++ +NL  + 
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213
           LA N +    P     L+KL  L   AN +    P  L  L++L  L L+ N      P 
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI 303

Query: 214 TFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIF 273
           +   LKNL  L+L  NN+S   P  + +++ +Q     +  +     L     L N+   
Sbjct: 304 SN--LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSL---ANLTNINWL 356

Query: 274 SITGNQFT 281
           S   NQ +
Sbjct: 357 SAGHNQIS 364

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 2e-13
 Identities = 50/251 (19%), Positives = 75/251 (29%), Gaps = 37/251 (14%)

Query: 63  CQWYGVTCSPR---------YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTN 113
           C    V CS                +LDLQN K+         NL  L  L L NN  + 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 114 AIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHL-------------- 159
             P     L +L+ LYL  N               L V    +  +              
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 160 ---------VGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGS 210
                     G     F  + KL ++     N+   IP  L    SL  L L  N     
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKV 186

Query: 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNL 270
              +  GL NL  L L  N++S     S+ N   ++   + +  +              +
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYI 244

Query: 271 RIFSITGNQFT 281
           ++  +  N  +
Sbjct: 245 QVVYLHNNNIS 255

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 39/194 (20%), Positives = 61/194 (31%), Gaps = 11/194 (5%)

Query: 43  SKITNDALGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHI--GNLSF 100
           +K+       L               +         +  L  +++  T    I  G    
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 172

Query: 101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLV 160
           L +L L  N  T      +  L  L  L L  NS       S +N  +L  + L  N LV
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

Query: 161 GKIPSEFGSLSKLQFLSTTANNLIG------NIPSSLGNLSSLRGLSLSRN--GFYGSIP 212
            K+P        +Q +    NN+          P      +S  G+SL  N   ++   P
Sbjct: 233 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291

Query: 213 DTFGGLKNLVNLSL 226
            TF  +     + L
Sbjct: 292 STFRCVYVRAAVQL 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 3e-12
 Identities = 44/233 (18%), Positives = 67/233 (28%), Gaps = 6/233 (2%)

Query: 50  LGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSP-HIGNLSFLQKLDLRN 108
              L       +               +  LDL +   + ++ P     L  L  L L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 109 NSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFG 168
                  P     L  LQ LYLQ N+       +  +  NL  + L  N +       F 
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 169 SLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228
            L  L  L    N +    P +  +L  L  L L  N       +    L+ L  L L  
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

Query: 229 NNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           N             + +Q F   S+ +   +P  L        +  +  N   
Sbjct: 235 NPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQRLA----GRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 1e-09
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 4/192 (2%)

Query: 70  CSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILY 129
           C    +           L   +   I      Q++ L  N  ++         R L IL+
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 130 LQINSFDGEIPASTSNCSNLLVVSLALNHLVGKI-PSEFGSLSKLQFLSTTANNLIGNIP 188
           L  N       A+ +  + L  + L+ N  +  + P+ F  L +L  L      L    P
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTF 248
                L++L+ L L  N       DTF  L NL +L L  N +S     +   + S+   
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 249 DVGSTYIEGEMP 260
            +    +    P
Sbjct: 183 LLHQNRVAHVHP 194

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 15/120 (12%), Positives = 29/120 (24%), Gaps = 9/120 (7%)

Query: 56  WNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI 115
                                +             +         L++L++ NN     +
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-L 299

Query: 116 PPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQF 175
           P     L RL   +  +               NL  + +  N L  + P    S+  L+ 
Sbjct: 300 PALPPRLERLIASFNHLAEVPELPQ-------NLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 129 YLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP 188
              +N+   EI +      +L  ++++ N L+ ++P+    L +L      + N +  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIA----SFNHLAEVP 320

Query: 189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL 221
               NL     L +  N      PD    +++L
Sbjct: 321 ELPQNLKQ---LHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 106 LRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPS 165
              N+ +N I         L+ L +  N    E+PA       L  +  + NHL  ++P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHL-AEVPE 321

Query: 166 EFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLR 198
              +L +L        N +   P    ++  LR
Sbjct: 322 LPQNLKQLHV----EYNPLREFPDIPESVEDLR 350

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 40/202 (19%), Positives = 55/202 (27%), Gaps = 26/202 (12%)

Query: 69  TCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQIL 128
             S     + + +     L   L P +        L L  N         +    RL  L
Sbjct: 5   EVSKVASHLEV-NCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 129 YL---------------------QINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEF 167
            L                       ++    +P        L V+ ++ N L        
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 168 GSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227
             L +LQ L    N L    P  L     L  LSL+ N           GL+NL  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL- 179

Query: 228 VNNLSGTIPPSIFNISSIQTFD 249
             N   TIP   F    +    
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAF 201

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 56  WNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI 115
                +  +           ++  L L N  L    +  +  L  L  L L+ NS    I
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I 187

Query: 116 PPQIGHLRRLQILYLQINSFD 136
           P        L   +L  N + 
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWL 208

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 79  ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGE 138
           +L L +  L  T+  H+  L  +  LDL +N     +PP +  LR L++L    N+ +  
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV 58

Query: 139 IPASTSNCSNLLVVSLALNHLVG-KIPSEFGSLSKLQFLSTTANNL------IGNIPSSL 191
              +       L   L  N L          S  +L  L+   N+L         +   L
Sbjct: 59  DGVANLPRLQEL--LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 192 GNLSSL 197
            ++SS+
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 174 QFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
           + L     +L   +   L  L  +  L LS N      P     L+ L  L    N    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--L 55

Query: 234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
                + N+  +Q   + +  ++    +    + P L + ++ GN   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 8e-06
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 101 LQKLDLRNNSFTNAIPPQI-GHLRRLQILYLQINSFDGE----IPASTSNCSNLLVVSLA 155
           +Q LD++    ++A   ++   L++ Q++ L            I ++      L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 156 LNHLVGKIPSEFGSLSKLQFLSTTANNL 183
            N L            +         +L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 2e-04
 Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 148 NLLVVSLALNHLVGKIPSE-FGSLSKLQFLSTTANNL----IGNIPSSLGNLSSLRGLSL 202
           ++  + +    L     +E    L + Q +      L      +I S+L    +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 203 SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233
             N                 +  +   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 2e-04
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 63  CQWYGVTCSPRYQRVTILDLQNLKL----VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQ 118
            +            + +L L +  +      +L+  +     L++LDL NN   +A   Q
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 119 IG-----HLRRLQILYLQINSFDGEIP----ASTSNCSNLLVVS 153
           +          L+ L L    +  E+     A   +  +L V+S
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 4e-04
 Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 13/135 (9%)

Query: 56  WNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTN-- 113
                HF             +++   L++  +           S L+ L L +   ++  
Sbjct: 326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 385

Query: 114 --AIPPQIGHLRRLQILYLQINSFDGEIPAS-----TSNCSNLLVVSLALNHLVGKIPSE 166
             ++   +     L+ L L  N                    L  + L   +   ++   
Sbjct: 386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

Query: 167 FGSLSK----LQFLS 177
             +L K    L+ +S
Sbjct: 446 LQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 7/85 (8%)

Query: 80  LDLQNLKLVGT-LSPHIGNLSFLQKLDLRNNSFTN----AIPPQIGHLRRLQILYLQINS 134
           LD+Q  +L     +  +  L   Q + L +   T      I   +     L  L L+ N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 135 FDGEIPASTSNCSNLLVVSLALNHL 159
                         L   S  +  L
Sbjct: 67  LGDVGVHCV--LQGLQTPSCKIQKL 89

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 72  PRYQRVTILDLQNLKL----VGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQI 127
           P  Q+  ++ L +  L       +S  +     L +L+LR+N   +     +    +   
Sbjct: 24  PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 83

Query: 128 LYLQINSFDG 137
             +Q  S   
Sbjct: 84  CKIQKLSLQN 93

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 5/113 (4%)

Query: 78  TILDLQNLKLVGTLSPHIGNLSFLQKLDLR-NNSFTNAIPPQIGHLRRLQILYLQINSFD 136
             LDL    L   +    G L     +  R   SF +    +     R+Q + L  +  +
Sbjct: 3   QTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59

Query: 137 GE-IPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP 188
              +    S CS L  +SL    L   I +     S L  L+ +  +      
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 112

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.3 bits (95), Expect = 3e-05
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 9/179 (5%)

Query: 104 LDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPAST-SNCSNLLVVSLALNHLVGK 162
           +D         IP  I        L L  N               +L+ + L  N L G 
Sbjct: 13  VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 163 IPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV 222
            P+ F   S +Q L    N +          L  L+ L+L  N     +P +F  L +L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 223 NLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
           +L+L  N  +     + F    ++   +         P    + + +++I  +  ++F 
Sbjct: 130 SLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAP----SKVRDVQIKDLPHSEFK 183

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 3/73 (4%)

Query: 92  SPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV 151
           +    N    ++LDLR       I      L +   +    N               L  
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKT 67

Query: 152 VSLALNHLVGKIP 164
           + +  N +     
Sbjct: 68  LLVNNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 3/117 (2%)

Query: 165 SEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL 224
           +++ +  + + L       I  I +    L     +  S N       D F  L+ L  L
Sbjct: 12  AQYTNAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68

Query: 225 SLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
            +  N +          +  +    + +  +     LD   +L +L    I  N  T
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 3/51 (5%)

Query: 187 IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP 237
                   S    L +SR   +         LK L   S    NL   +P 
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 56  WNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI 115
              SI   Q   +T      ++T L   + K+       + +L  L ++ L+NN  ++  
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS 211

Query: 116 PPQIGHLRRLQILYL 130
           P  + +   L I+ L
Sbjct: 212 P--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 164 PSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223
            +   +LSKL  L    N +    P  L +L +L  + L  N      P       NL  
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 224 LSL 226
           ++L
Sbjct: 222 VTL 224

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 3/137 (2%)

Query: 146 CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPS-SLGNLSSLRGLSLSR 204
                 +    +  +            L  L       + ++    L  L  LR L++ +
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLG 264
           +G     PD F     L  L+ +  N   ++        S+Q   +    +     L   
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLN-LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

Query: 265 TTLPNLRIFSITGNQFT 281
                  +  +   +  
Sbjct: 125 QRWEEEGLGGVPEQKLQ 141

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 50  LGVLGSWNDSIHFCQWYGVTCSPRYQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNN 109
           L  L   +++I          S +    +   + +L         + NL+ L++LD+ +N
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL-------KPLANLTTLERLDISSN 182

Query: 110 SFTNAIPPQIGHLRRLQIL 128
             ++     +  L  L+ L
Sbjct: 183 KVSD--ISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 75  QRVTILDLQNLKLVGTLSP------HIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQIL 128
           + V   + + ++L G + P       +  L   + L L  N+        +  +  L+IL
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRIL 75

Query: 129 Y 129
            
Sbjct: 76  S 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.25
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.55
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.57
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=6.3e-37  Score=257.69  Aligned_cols=247  Identities=30%  Similarity=0.509  Sum_probs=190.0

Q ss_pred             CCHhHHHHHHHHHhhcccCCCCCCCCCCCCCCCC--cccceEecCCC--CcEEEEEcCCCCcee--ecCccccCCCCCCE
Q 036746           30 GNETDRAALLEFKSKITNDALGVLGSWNDSIHFC--QWYGVTCSPRY--QRVTILDLQNLKLVG--TLSPHIGNLSFLQK  103 (281)
Q Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c--~~~~~~~~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L~~  103 (281)
                      |.++|++||++||+.+.++  ..+.+|..+.++|  .|.||.|+...  .+|+.|+++++++.+  .+|+.++++++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~--~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~   80 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF   80 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCC--GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred             CCHHHHHHHHHHHHHCCCC--CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence            6789999999999999743  3689999888999  49999998643  489999999999987  58899999999999


Q ss_pred             EeCCC-CCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccc
Q 036746          104 LDLRN-NSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN  182 (281)
Q Consensus       104 L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  182 (281)
                      |+|++ |.+.|.+|..|+++++|++|++++|.+.+..+..+..+.+|++++++.|.+.+.+|..+..++.++++++++|.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence            99997 88999999999999999999999999998888888888999999999998888888888889999999998888


Q ss_pred             cccCCCcccCCCCCC-CEEEcccCcCcc-----------------------cCCccCCCCCCCCEEEcccCccccccChh
Q 036746          183 LIGNIPSSLGNLSSL-RGLSLSRNGFYG-----------------------SIPDTFGGLKNLVNLSLVVNNLSGTIPPS  238 (281)
Q Consensus       183 ~~~~~~~~l~~l~~L-~~L~l~~n~~~~-----------------------~~p~~~~~l~~L~~L~l~~n~l~~~~p~~  238 (281)
                      +.+.+|..+..+..+ +.+++++|++++                       .+|..+..+++++.+++++|.+.+.+ ..
T Consensus       161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~  239 (313)
T d1ogqa_         161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK  239 (313)
T ss_dssp             CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            887777766666554 555555554432                       23333344455556666666555433 34


Q ss_pred             ccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccC
Q 036746          239 IFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQF  280 (281)
Q Consensus       239 l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~l  280 (281)
                      +..+++++.|++++|+++|.+|..+. .+++|++|++++|+|
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~-~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSEE
T ss_pred             cccccccccccCccCeecccCChHHh-CCCCCCEEECcCCcc
Confidence            55556666666666666666665554 456666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.8e-26  Score=184.83  Aligned_cols=199  Identities=20%  Similarity=0.180  Sum_probs=169.6

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .....++.++++++ .+|+.+.  +++++|+|++|.+.+..+..|.++++|++|++++|.++ .++ .+..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccc
Confidence            34455688888887 5676664  57999999999998666678899999999999999998 444 3568899999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|++. ..+..+..+++|+.|++++|.+....+..+..+.++++|++++|.+....+..+..+++++.+++++|++++.
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            999998 5577888999999999999988866677788889999999999999866677788899999999999999977


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      .+..+..+++|++|+|++|+|+ .+|.+++ .+++|+.|++++|++.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~-~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCc-ccChhHC-CCCCCCEEEecCCCCC
Confidence            7777889999999999999999 8999888 6899999999999863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-25  Score=184.73  Aligned_cols=206  Identities=19%  Similarity=0.195  Sum_probs=183.1

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEcc-CccCcccCCCCCCCCCCCcEEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQ-INSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      ..++.|++++|++....+..|.+++.|++|++++|.+....+..+.++..++.++.. .+.++...+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            568999999999987667789999999999999999998788888889999998875 5566655577899999999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      +++|.+....+..+...++|+.+++.+|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|+.+++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99999987677778889999999999999986666778889999999999999997778899999999999999999998


Q ss_pred             ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ..|..+..+++|++||+++|.+. .++...+..+++|++|++++|+++
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cChhHhhhhhhcccccccccccc-cccccccccccccCEEEecCCCCC
Confidence            88999999999999999999999 566666668999999999999863

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=7.4e-27  Score=195.72  Aligned_cols=204  Identities=25%  Similarity=0.439  Sum_probs=179.0

Q ss_pred             CCCcEEEEEcCC-CCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcE
Q 036746           73 RYQRVTILDLQN-LKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLV  151 (281)
Q Consensus        73 ~~~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  151 (281)
                      ..++++.|++++ |++.|.+|..++++++|++|++++|.+.+..+..+..+.+|+++++++|.+.+.+|..+.+++++++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            457899999986 8899999999999999999999999999888888999999999999999999899999999999999


Q ss_pred             EEccCCCCCCCCCcccCCCCCC-cEEeccccccccC-----------------------CCcccCCCCCCCEEEcccCcC
Q 036746          152 VSLALNHLVGKIPSEFGSLSKL-QFLSTTANNLIGN-----------------------IPSSLGNLSSLRGLSLSRNGF  207 (281)
Q Consensus       152 L~l~~n~~~~~~~~~l~~l~~L-~~L~l~~n~~~~~-----------------------~~~~l~~l~~L~~L~l~~n~~  207 (281)
                      +++++|.+.+.+|..+..+.++ +.+++++|++.+.                       .|..+..+++++.+++++|.+
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998888888777665 6777766665443                       344455677899999999999


Q ss_pred             cccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746          208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       208 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      .+.+| .++.+++|+.|++++|++++.+|..++++++|++|+|++|+++|.+|..  ..+++|+.+++++|+
T Consensus       234 ~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~--~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         234 AFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred             ccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc--ccCCCCCHHHhCCCc
Confidence            86655 6888999999999999999999999999999999999999999999953  368899999999997

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.4e-24  Score=176.57  Aligned_cols=212  Identities=25%  Similarity=0.282  Sum_probs=145.9

Q ss_pred             CcccceEecCC---------CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCc
Q 036746           63 CQWYGVTCSPR---------YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN  133 (281)
Q Consensus        63 c~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  133 (281)
                      |.|..+.|...         .+.++.|++++|++....+..|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            66777777531         267999999999997655567999999999999999999777888999999999999999


Q ss_pred             cCcccCCCCC------------------------------------------------CCCCCCcEEEccCCCCCCCCCc
Q 036746          134 SFDGEIPAST------------------------------------------------SNCSNLLVVSLALNHLVGKIPS  165 (281)
Q Consensus       134 ~l~~~~~~~~------------------------------------------------~~l~~L~~L~l~~n~~~~~~~~  165 (281)
                      +++ .+|..+                                                ..+++|+.+++++|.+. .+|.
T Consensus        90 ~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~  167 (305)
T d1xkua_          90 QLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ  167 (305)
T ss_dssp             CCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred             ccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCc
Confidence            876 344321                                                22334455555555444 2232


Q ss_pred             ccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCC
Q 036746          166 EFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSI  245 (281)
Q Consensus       166 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  245 (281)
                      .  .+++|+.|++.+|...+..+..+..++.+++|++++|.+.+..+..+.++++|++|++++|+++ .+|..+..+++|
T Consensus       168 ~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         168 G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             c--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCC
Confidence            2  2355666666666665555666666677777777777777666666677777777777777776 556677777777


Q ss_pred             cEEEcccCcccccCChhhh------hCCCCCCEEeccCccC
Q 036746          246 QTFDVGSTYIEGEMPLDLG------TTLPNLRIFSITGNQF  280 (281)
Q Consensus       246 ~~L~l~~n~i~~~~p~~~~------~~~~~L~~L~l~~N~l  280 (281)
                      +.|++++|+|+ .++...+      ...++|+.|++++|++
T Consensus       245 ~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         245 QVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcC
Confidence            77777777776 4443222      2456677777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-23  Score=168.75  Aligned_cols=178  Identities=25%  Similarity=0.240  Sum_probs=161.7

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|.+.+..+..|.++++|++|++++|.++ .++ .+..+++|++|++++|+++ ..+..+..+++|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            57999999999998777788999999999999999998 444 3578999999999999998 66888999999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+....+..+..+.++++|++.+|.+....+..+..+++++.+++++|++++..+..+..+++|++|++++|+++ .
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence            999999777788899999999999999998666677888999999999999999777888999999999999999998 8


Q ss_pred             cChhccCCCCCcEEEcccCccc
Q 036746          235 IPPSIFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~  256 (281)
                      +|..+..+++|+.|+|++|++.
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cChhHCCCCCCCEEEecCCCCC
Confidence            8988899999999999999876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-22  Score=164.44  Aligned_cols=198  Identities=21%  Similarity=0.214  Sum_probs=170.2

Q ss_pred             EEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEcc-CCC
Q 036746           80 LDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLA-LNH  158 (281)
Q Consensus        80 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~  158 (281)
                      ++.++.++. .+|..+.  +.+++|+|++|.+++..+..|.++++|++|++++|.+....+..+..++.++.+... .+.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            456676765 6666554  578999999999996666789999999999999999997777888889999998865 566


Q ss_pred             CCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChh
Q 036746          159 LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPS  238 (281)
Q Consensus       159 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~  238 (281)
                      +....+..+.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..+..+++|+.|++++|.+++..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            66566778999999999999999987666677888899999999999999666788999999999999999999777888


Q ss_pred             ccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          239 IFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       239 l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +.++++|+.+++++|.+++..|..+. .+++|++|++++|+++
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~-~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCS
T ss_pred             hccccccchhhhhhccccccChhHhh-hhhhcccccccccccc
Confidence            99999999999999999966666554 8999999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.1e-21  Score=163.13  Aligned_cols=196  Identities=22%  Similarity=0.328  Sum_probs=157.9

Q ss_pred             EEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccC
Q 036746           77 VTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLAL  156 (281)
Q Consensus        77 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  156 (281)
                      .+.++.++.+++ .+|..+.  +.+++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            356788888886 6677664  6899999999999865556899999999999999999966678899999999999999


Q ss_pred             CCCCCCCCcc------------------------------------------------cCCCCCCcEEeccccccccCCC
Q 036746          157 NHLVGKIPSE------------------------------------------------FGSLSKLQFLSTTANNLIGNIP  188 (281)
Q Consensus       157 n~~~~~~~~~------------------------------------------------l~~l~~L~~L~l~~n~~~~~~~  188 (281)
                      |++. .+|..                                                +..+++|+.+++.+|.+. .+|
T Consensus        89 n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~  166 (305)
T d1xkua_          89 NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP  166 (305)
T ss_dssp             SCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred             CccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccC
Confidence            9876 22321                                                123445556666655554 333


Q ss_pred             cccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCC
Q 036746          189 SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLP  268 (281)
Q Consensus       189 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~  268 (281)
                      ..  ..++|++|++++|...+..+..+.+++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|.++. .++
T Consensus       167 ~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~-~l~  242 (305)
T d1xkua_         167 QG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHK  242 (305)
T ss_dssp             SS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCS
T ss_pred             cc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc-ccc
Confidence            32  2467888888888888777888889999999999999999877888999999999999999998 7888776 799


Q ss_pred             CCCEEeccCccCC
Q 036746          269 NLRIFSITGNQFT  281 (281)
Q Consensus       269 ~L~~L~l~~N~lt  281 (281)
                      +|++|++++|+|+
T Consensus       243 ~L~~L~Ls~N~i~  255 (305)
T d1xkua_         243 YIQVVYLHNNNIS  255 (305)
T ss_dssp             SCCEEECCSSCCC
T ss_pred             CCCEEECCCCccC
Confidence            9999999999985

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=8.5e-19  Score=139.43  Aligned_cols=187  Identities=20%  Similarity=0.293  Sum_probs=154.1

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEE
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVS  153 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  153 (281)
                      ..+++.|++.++++.. ++ .+..+++|++|++++|.+.+..  .+..+++++++++++|.++ .+ ..+.++++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NV-SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-cc-ccccccccccccc
Confidence            3678999999999874 43 5889999999999999998533  3889999999999999987 44 3578899999999


Q ss_pred             ccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCcccc
Q 036746          154 LALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG  233 (281)
Q Consensus       154 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~  233 (281)
                      ++++...+.  ..+...+.++.+.++.+.+...  ..+..+++|++|++++|.+.+..  .++++++|++|++++|++++
T Consensus       114 l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         114 LTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccCC
Confidence            999887643  4467788999999988877533  34778889999999999987433  37889999999999999984


Q ss_pred             ccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccC
Q 036746          234 TIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITG  277 (281)
Q Consensus       234 ~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~  277 (281)
                       ++ .+.++++|++|++++|+++ .++. + .++++|+.|++++
T Consensus       188 -l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l-~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 -IS-PLASLPNLIEVHLKNNQIS-DVSP-L-ANTSNLFIVTLTN  226 (227)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCC-BCGG-G-TTCTTCCEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEECcCCcCC-CCcc-c-ccCCCCCEEEeeC
Confidence             44 4789999999999999999 4553 4 4899999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.6e-19  Score=140.76  Aligned_cols=166  Identities=23%  Similarity=0.311  Sum_probs=116.0

Q ss_pred             CCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEE
Q 036746           97 NLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFL  176 (281)
Q Consensus        97 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  176 (281)
                      .+..|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++. ++ .+..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            34567777777777663 32 36667777777777777763 33 35667777777777777763 33 46777788888


Q ss_pred             eccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCccc
Q 036746          177 STTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~  256 (281)
                      ++.+|... . ...+..++.++.+++++|.+++  +..+..+++|+.+++++|.+++ ++ .+.++++|++|++++|+++
T Consensus       118 ~l~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGIS-D-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCC-C-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC
Confidence            88777664 2 2346677788888888887763  2345667888888888888874 33 3778888888888888887


Q ss_pred             ccCChhhhhCCCCCCEEeccC
Q 036746          257 GEMPLDLGTTLPNLRIFSITG  277 (281)
Q Consensus       257 ~~~p~~~~~~~~~L~~L~l~~  277 (281)
                       .+| .+. ++++|++|++++
T Consensus       192 -~l~-~l~-~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 -DLR-ALA-GLKNLDVLELFS  209 (210)
T ss_dssp             -BCG-GGT-TCTTCSEEEEEE
T ss_pred             -CCh-hhc-CCCCCCEEEccC
Confidence             455 343 788888888864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=6.9e-20  Score=142.10  Aligned_cols=127  Identities=24%  Similarity=0.279  Sum_probs=73.5

Q ss_pred             EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccC-CchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC
Q 036746           79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNA-IPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN  157 (281)
Q Consensus        79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  157 (281)
                      .++.++++++ .+|..+.  +++++|+|++|.+++. .+..|.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3555555554 4454442  4566666666666542 3345556666666666666666555555666666666666666


Q ss_pred             CCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCc
Q 036746          158 HLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       158 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~  208 (281)
                      ++....+..|.++++|++|++++|.+.+..+..|..+++|+++++++|.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            666444455555666666666666555444455555555555555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.2e-18  Score=148.83  Aligned_cols=188  Identities=23%  Similarity=0.295  Sum_probs=155.6

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.++++++.+.+..|  ....++|++|++++|.+.. + +.+..+++|+.|++++|.+++. + .+..+++|+++++
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL-A-PLSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEEC
T ss_pred             cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCC-C-cccccccCCEeec
Confidence            667889999998876544  4567899999999999873 3 4678899999999999999843 3 3778899999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      +++.+.+. + .+..++.++.+.+..|.+.+  ...+..+++++.+++++|.+++..  .+..+++|++|++++|++++ 
T Consensus       271 ~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-  343 (384)
T d2omza2         271 GANQISNI-S-PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-  343 (384)
T ss_dssp             CSSCCCCC-G-GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-
T ss_pred             cCcccCCC-C-cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-
Confidence            99998843 3 47788999999999998864  345788899999999999998543  37889999999999999984 


Q ss_pred             cChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCcc
Q 036746          235 IPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQ  279 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~  279 (281)
                      ++ .+.++++|++|++++|++++..|  + .++++|+.|++++|.
T Consensus       344 l~-~l~~l~~L~~L~l~~N~l~~l~~--l-~~l~~L~~L~L~~Na  384 (384)
T d2omza2         344 VS-SLANLTNINWLSAGHNQISDLTP--L-ANLTRITQLGLNDQA  384 (384)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCBCGG--G-TTCTTCSEEECCCEE
T ss_pred             Ch-hHcCCCCCCEEECCCCcCCCChh--h-ccCCCCCEeeCCCCc
Confidence            44 68899999999999999995433  4 489999999999983

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.7e-18  Score=134.81  Aligned_cols=163  Identities=22%  Similarity=0.364  Sum_probs=118.8

Q ss_pred             cCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcE
Q 036746           96 GNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQF  175 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  175 (281)
                      ..++++++|++++|.+.. + +.+..+++|++|++++|.+++ ++ .+.++++|++|++++|.+. .++ .+..++.|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-cc-cccCCcccccccccccccc-ccc-cccccccccc
Confidence            345677788888777763 3 246677888888888888773 33 2777888888888888776 333 4778888888


Q ss_pred             EeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcc
Q 036746          176 LSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYI  255 (281)
Q Consensus       176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i  255 (281)
                      ++++++....  ...+..+++|+.+++++|.+. .++ .+..+++++.|++.+|++++ ++ .++++++|++|++++|++
T Consensus       111 L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             cccccccccc--ccccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCC
Confidence            8888777653  234777888888888888876 333 57788888888888888874 33 477888899999999988


Q ss_pred             cccCChhhhhCCCCCCEE
Q 036746          256 EGEMPLDLGTTLPNLRIF  273 (281)
Q Consensus       256 ~~~~p~~~~~~~~~L~~L  273 (281)
                      + .++ .+. .+++|+.|
T Consensus       185 ~-~i~-~l~-~L~~L~~L  199 (199)
T d2omxa2         185 S-DIS-VLA-KLTNLESL  199 (199)
T ss_dssp             C-CCG-GGG-GCTTCSEE
T ss_pred             C-CCc-ccc-CCCCCCcC
Confidence            7 454 343 68888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.8e-19  Score=140.28  Aligned_cols=201  Identities=19%  Similarity=0.107  Sum_probs=141.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCC-chhccCCCCCCEEEccC-ccCcccCCCCCCCCCCCcEE
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAI-PPQIGHLRRLQILYLQI-NSFDGEIPASTSNCSNLLVV  152 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L  152 (281)
                      .+++.|++++|.+....+..|.++++|++|++++|.+.+.+ +..|.++++++++.+.. |.+....+..+.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            46888999999887555567888999999999998876543 44678888889888764 56665666778888999999


Q ss_pred             EccCCCCCCCCC-cccCCCCCCcEEeccccccccCCCcccCCC-CCCCEEEcccCcCcccCCccCCCCCCCCEE-EcccC
Q 036746          153 SLALNHLVGKIP-SEFGSLSKLQFLSTTANNLIGNIPSSLGNL-SSLRGLSLSRNGFYGSIPDTFGGLKNLVNL-SLVVN  229 (281)
Q Consensus       153 ~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L-~l~~n  229 (281)
                      ++++|.+....+ ..+..+..+..+...++.+....+..+..+ ..++.+++.+|+++. ++....+..++.++ ++++|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhcccccccc
Confidence            999988863322 123344555555555555554444555555 378889999998884 44444445555555 46777


Q ss_pred             ccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccC
Q 036746          230 NLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITG  277 (281)
Q Consensus       230 ~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~  277 (281)
                      +++...+..+.++++|+.|++++|+|+ .+|...+.++++|+.+++.+
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEES
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCC
Confidence            787443456788899999999999988 67776555677777766654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=5e-18  Score=144.80  Aligned_cols=195  Identities=25%  Similarity=0.326  Sum_probs=132.4

Q ss_pred             CCcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccC--------------
Q 036746           74 YQRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI--------------  139 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------  139 (281)
                      .++++.|++++|++.+. + .++++++|++|++++|.+.+ ++ .+..+++|+.|+++++.+++..              
T Consensus        65 L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~  140 (384)
T d2omza2          65 LNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  140 (384)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             CCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccc-cc-cccccccccccccccccccccccccccccccccccc
Confidence            47899999999998754 3 38899999999999999874 33 3778888888888776543100              


Q ss_pred             -------------------------------------------------CCCCCC----------------------CCC
Q 036746          140 -------------------------------------------------PASTSN----------------------CSN  148 (281)
Q Consensus       140 -------------------------------------------------~~~~~~----------------------l~~  148 (281)
                                                                       ...+..                      .++
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~  220 (384)
T d2omza2         141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN  220 (384)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCC
Confidence                                                             001112                      234


Q ss_pred             CcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCC----------------
Q 036746          149 LLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIP----------------  212 (281)
Q Consensus       149 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p----------------  212 (281)
                      |+++++++|.+.. + +.+..+++|+.+++++|.+.+..  .+..+++|++++++++.+.+..+                
T Consensus       221 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         221 LDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ  296 (384)
T ss_dssp             CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             CCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccc
Confidence            5555555555442 1 24555667777777777665322  25666777777777776653211                


Q ss_pred             ----ccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          213 ----DTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       213 ----~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                          ..+..+++++.|++++|++++. + .+..+++|++|++++|+++ .++ .+. .+++|++|++++|+++
T Consensus       297 l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~-~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         297 LEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLA-NLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCCEEECCSSCCC
T ss_pred             cccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHc-CCCCCCEEECCCCcCC
Confidence                1234567788888888888753 3 3778899999999999998 454 454 7999999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=4.1e-18  Score=133.78  Aligned_cols=164  Identities=24%  Similarity=0.330  Sum_probs=138.4

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ..++.|+++++.+... + .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|+++ .++ .+..+++|+.+++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence            5688999999998643 2 47889999999999999985 44 3678999999999999998 455 5888999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      ++|.+..  ...+..++.++.+++++|.+.+  +..+..+++|+++++++|++++ ++ .+.++++|++|++++|.++ .
T Consensus       120 ~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         120 EHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             TTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-B
T ss_pred             ccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-C
Confidence            9998863  3467889999999999998863  3457788999999999999984 44 3789999999999999998 4


Q ss_pred             cChhccCCCCCcEEEccc
Q 036746          235 IPPSIFNISSIQTFDVGS  252 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~l~~  252 (281)
                      ++ .+.++++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            55 588999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=5.3e-18  Score=134.78  Aligned_cols=186  Identities=23%  Similarity=0.279  Sum_probs=149.7

Q ss_pred             EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCC
Q 036746           79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNH  158 (281)
Q Consensus        79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  158 (281)
                      .+++..+.+.+..  ...++.+|+.|++.+|.+. .++ .+.++++|++|++++|.+.+..  .+..+++++++++++|.
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            3455556655543  3467789999999999998 453 5889999999999999998432  37899999999999998


Q ss_pred             CCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChh
Q 036746          159 LVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPS  238 (281)
Q Consensus       159 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~  238 (281)
                      ++ .+ +.+..+++|+.++++++...+.  ..+...+.++.+.++++.+....  .+..+++|+.|++++|.+++.  ..
T Consensus        97 ~~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          97 LK-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             CS-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             cc-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hh
Confidence            87 33 4578999999999998877533  34677889999999999886433  366789999999999998743  34


Q ss_pred             ccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          239 IFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       239 l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +.++++|+.|++++|+++ .++. + ..+++|++|++++|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~-~l~~-l-~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKIS-DISP-L-ASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCCEEECTTSCCC
T ss_pred             hcccccceecccCCCccC-CChh-h-cCCCCCCEEECcCCcCC
Confidence            789999999999999998 4543 4 47999999999999985

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.5e-18  Score=135.83  Aligned_cols=198  Identities=17%  Similarity=0.160  Sum_probs=150.6

Q ss_pred             EEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCC-CCCCCCCCCcEEEccC-
Q 036746           79 ILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIP-ASTSNCSNLLVVSLAL-  156 (281)
Q Consensus        79 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-  156 (281)
                      .++.++.+++ .+|..+.  +++++|++++|.+....+..|.++++|++|++++|.+...++ ..|..++.++++.+.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            4566666665 6666553  579999999999986556678999999999999999875444 4678899999998764 


Q ss_pred             CCCCCCCCcccCCCCCCcEEeccccccccCCC-cccCCCCCCCEEEcccCcCcccCCccCCCC-CCCCEEEcccCccccc
Q 036746          157 NHLVGKIPSEFGSLSKLQFLSTTANNLIGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGL-KNLVNLSLVVNNLSGT  234 (281)
Q Consensus       157 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~L~l~~n~l~~~  234 (281)
                      |.+....+..+..+++|+++++.+|.+....+ ..+..+..+..+...++.+....+..+.++ ..++.+++++|+++ .
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~  167 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E  167 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-c
Confidence            66776667788999999999999998864322 223344555566666777775555666665 47889999999998 4


Q ss_pred             cChhccCCCCCcEEE-cccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          235 IPPSIFNISSIQTFD-VGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       235 ~p~~l~~l~~L~~L~-l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      ++.......+++++. +++|+++ .+|.+.+.++++|++|++++|+|+
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC
Confidence            555555666766664 5777888 788887778999999999999885

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.8e-17  Score=128.95  Aligned_cols=160  Identities=24%  Similarity=0.414  Sum_probs=134.5

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .+++.|+++++++.. + +.+..+++|++|++++|.+++ +++ +.++++|++|++++|.+. .++ .+.++++|+.+++
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            678999999999864 3 347889999999999999985 433 889999999999999987 444 4789999999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT  234 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  234 (281)
                      +++.....  ..+..+++|+.+++++|.+. .+ +.+..+++|++|++.+|.+++ ++ .++++++|++|++++|++++ 
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-  186 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-  186 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-
Confidence            99988743  45788999999999999886 33 458899999999999999984 33 47899999999999999984 


Q ss_pred             cChhccCCCCCcEE
Q 036746          235 IPPSIFNISSIQTF  248 (281)
Q Consensus       235 ~p~~l~~l~~L~~L  248 (281)
                      ++ .++++++|++|
T Consensus       187 i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCcC
Confidence            44 57889999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=4e-18  Score=131.99  Aligned_cols=173  Identities=19%  Similarity=0.224  Sum_probs=142.0

Q ss_pred             CCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccC-CCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEecc
Q 036746          101 LQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEI-PASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTT  179 (281)
Q Consensus       101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  179 (281)
                      .+.++.+++.++ .+|..+.  +++++|++++|.+++.+ +..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            467899999998 6777653  68999999999998544 4567899999999999999998888999999999999999


Q ss_pred             ccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccC
Q 036746          180 ANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEM  259 (281)
Q Consensus       180 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~  259 (281)
                      +|++....+..|..+++|++|+|++|++++..|.+|..+++|+++++++|.+..... ...-...++.+.+..+.+....
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeCC
Confidence            999997778889999999999999999997778889999999999999999874322 1111224566677778877666


Q ss_pred             ChhhhhCCCCCCEEeccCccCC
Q 036746          260 PLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       260 p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      |.    .+..++.++++.|+|+
T Consensus       166 p~----~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         166 PS----KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             ST----TTTTSBGGGSCTTTCC
T ss_pred             Ch----hhcCCEeeecCHhhCc
Confidence            75    4566778888888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.6e-15  Score=108.42  Aligned_cols=118  Identities=21%  Similarity=0.284  Sum_probs=70.6

Q ss_pred             EEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCc
Q 036746          151 VVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN  230 (281)
Q Consensus       151 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~  230 (281)
                      .|++++|.++ .++ .+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+| .+.++++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            4555555554 332 2455556666666666554 44555566666666666666665 333 35666677777777777


Q ss_pred             ccccc-ChhccCCCCCcEEEcccCccccc--CChhhhhCCCCCCEE
Q 036746          231 LSGTI-PPSIFNISSIQTFDVGSTYIEGE--MPLDLGTTLPNLRIF  273 (281)
Q Consensus       231 l~~~~-p~~l~~l~~L~~L~l~~n~i~~~--~p~~~~~~~~~L~~L  273 (281)
                      +++.. ...+..+++|+.|++++|++++.  .+..+...+|+|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            66321 24566777788888888877632  344555567777766

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=3.2e-14  Score=119.21  Aligned_cols=188  Identities=20%  Similarity=0.181  Sum_probs=120.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      ++++.|++++|++. .+|..+   .+|+.|++++|.+. .++. +  .+.|++|++++|.+. .+|. +..+++|+++++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            67899999999987 566543   57788888888776 3332 1  245888888888877 5554 567788888888


Q ss_pred             cCCCCCCCCC------------------cccCCCCCCcEEeccccccccC------------------CCcccCCCCCCC
Q 036746          155 ALNHLVGKIP------------------SEFGSLSKLQFLSTTANNLIGN------------------IPSSLGNLSSLR  198 (281)
Q Consensus       155 ~~n~~~~~~~------------------~~l~~l~~L~~L~l~~n~~~~~------------------~~~~l~~l~~L~  198 (281)
                      +++.+.....                  ..+..++.++.+.+.+|.....                  ....+..++.|+
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             ccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            7776642111                  1234455566666655443211                  011123345556


Q ss_pred             EEEcccCcCccc--------------------------------------------------------CCccCCCCCCCC
Q 036746          199 GLSLSRNGFYGS--------------------------------------------------------IPDTFGGLKNLV  222 (281)
Q Consensus       199 ~L~l~~n~~~~~--------------------------------------------------------~p~~~~~l~~L~  222 (281)
                      .+++++|.....                                                        ++.....+++|+
T Consensus       208 ~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~  287 (353)
T d1jl5a_         208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE  287 (353)
T ss_dssp             EEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCC
Confidence            665554432100                                                        000011246789


Q ss_pred             EEEcccCccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          223 NLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       223 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +|++++|+++ .+|.   .+++|+.|++++|+|+ .+|.    .+++|++|++++|+++
T Consensus       288 ~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         288 ELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             EEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             EEECCCCccC-cccc---ccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCC
Confidence            9999999988 5664   3578899999999988 6774    4578999999999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.7e-16  Score=115.78  Aligned_cols=127  Identities=16%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             ccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCC
Q 036746          119 IGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLR  198 (281)
Q Consensus       119 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  198 (281)
                      +.++.+++.|++++|.++ .++..+..+++|++|++++|.+. .+ +.+..+++|                        +
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L------------------------~   66 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRL------------------------K   66 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSC------------------------C
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcch------------------------h
Confidence            345555666666666655 34444444555555555555554 22 234444444                        4


Q ss_pred             EEEcccCcCcccCCccCCCCCCCCEEEcccCccccccC--hhccCCCCCcEEEcccCcccccCCh---hhhhCCCCCCEE
Q 036746          199 GLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP--PSIFNISSIQTFDVGSTYIEGEMPL---DLGTTLPNLRIF  273 (281)
Q Consensus       199 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~l~~n~i~~~~p~---~~~~~~~~L~~L  273 (281)
                      +|++++|.++...+..+..+++|+.|++++|.++. ++  ..+..+++|++|++++|+++ ..|.   .+...+|+|+.|
T Consensus        67 ~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_          67 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             EEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEE
T ss_pred             hhhcccccccCCCccccccccccccceeccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCee
Confidence            45555544442222223344555555555555442 22  23445555566666665555 3332   122345666655


Q ss_pred             e
Q 036746          274 S  274 (281)
Q Consensus       274 ~  274 (281)
                      |
T Consensus       145 D  145 (162)
T d1a9na_         145 D  145 (162)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.5e-16  Score=115.50  Aligned_cols=111  Identities=21%  Similarity=0.165  Sum_probs=83.6

Q ss_pred             cccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCC
Q 036746           94 HIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKL  173 (281)
Q Consensus        94 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  173 (281)
                      .+.+...+++|++++|.+. .++..+..+++|++|++++|.++ .+ +.+..+++|++|++++|.+....+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            3567788999999999998 56766778999999999999998 55 458899999999999999985444445567778


Q ss_pred             cEEeccccccccCCC--cccCCCCCCCEEEcccCcCc
Q 036746          174 QFLSTTANNLIGNIP--SSLGNLSSLRGLSLSRNGFY  208 (281)
Q Consensus       174 ~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~  208 (281)
                      +.|++++|.+.. ++  ..+..+++|+++++++|+++
T Consensus        90 ~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccc-cccccccccccccchhhcCCCccc
Confidence            888888777652 22  23455555666666665554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.3e-15  Score=107.60  Aligned_cols=102  Identities=20%  Similarity=0.309  Sum_probs=87.8

Q ss_pred             cEEeccccccccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccC
Q 036746          174 QFLSTTANNLIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGST  253 (281)
Q Consensus       174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  253 (281)
                      |+|++++|+++ .++ .+..+++|++|++++|.++ .+|..++.+++|+.|++++|.++ .+| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            68999999997 455 4889999999999999998 67888999999999999999998 455 5889999999999999


Q ss_pred             cccccCCh-hhhhCCCCCCEEeccCccCC
Q 036746          254 YIEGEMPL-DLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       254 ~i~~~~p~-~~~~~~~~L~~L~l~~N~lt  281 (281)
                      +|+ .++. ..+..+++|+.|++++|+++
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            998 4442 33347999999999999974

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-16  Score=129.83  Aligned_cols=196  Identities=21%  Similarity=0.202  Sum_probs=136.5

Q ss_pred             CcEEEEEcCCCCceee-cCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCc-cCccc-CCCCCCCCCCCcE
Q 036746           75 QRVTILDLQNLKLVGT-LSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQIN-SFDGE-IPASTSNCSNLLV  151 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~  151 (281)
                      .+++.|+++++.+.+. +...+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.. +...+..+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            5788999998887644 3444678899999999999887767777888899999999985 45421 1222346789999


Q ss_pred             EEccCCC-CCCC-CCcccC-CCCCCcEEeccccc--cccC-CCcccCCCCCCCEEEcccCc-CcccCCccCCCCCCCCEE
Q 036746          152 VSLALNH-LVGK-IPSEFG-SLSKLQFLSTTANN--LIGN-IPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNL  224 (281)
Q Consensus       152 L~l~~n~-~~~~-~~~~l~-~l~~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L  224 (281)
                      |+++++. ++.. +...+. ..++|+.|+++++.  +... +......+++|++|++++|. +++.....+.++++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            9998864 3311 112222 24679999998642  2211 22223467889999999864 666667778889999999


Q ss_pred             EcccC-ccccccChhccCCCCCcEEEcccCcccccCChhhhhCCCCCC
Q 036746          225 SLVVN-NLSGTIPPSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLR  271 (281)
Q Consensus       225 ~l~~n-~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~  271 (281)
                      ++++| .+++.....++++++|+.|++.++ +++..-..+...+|+|+
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            99985 677666677888899999999887 44333334444566665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.6e-16  Score=127.04  Aligned_cols=182  Identities=20%  Similarity=0.220  Sum_probs=137.0

Q ss_pred             cCCCCCCEEeCCCCCCccC-CchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC-CCCCC-CCcccCCCCC
Q 036746           96 GNLSFLQKLDLRNNSFTNA-IPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN-HLVGK-IPSEFGSLSK  172 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~  172 (281)
                      .....|++|+++++.+... +...+.++++|++|++++|.+.+..+..+.++++|++|+++++ .++.. +......+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            3556899999999988643 4456788999999999999988777777889999999999985 45421 2222456899


Q ss_pred             CcEEeccccc-cccC-CCcccC-CCCCCCEEEcccCc--Cccc-CCccCCCCCCCCEEEcccC-ccccccChhccCCCCC
Q 036746          173 LQFLSTTANN-LIGN-IPSSLG-NLSSLRGLSLSRNG--FYGS-IPDTFGGLKNLVNLSLVVN-NLSGTIPPSIFNISSI  245 (281)
Q Consensus       173 L~~L~l~~n~-~~~~-~~~~l~-~l~~L~~L~l~~n~--~~~~-~p~~~~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L  245 (281)
                      |++|+++++. ++.. +...+. ..++|+.|+++++.  +++. +.....++++|++|++++| .+++..+..+.++++|
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            9999999864 3211 112222 24689999999753  4322 3333456899999999986 5777777888999999


Q ss_pred             cEEEcccC-cccccCChhhhhCCCCCCEEeccCc
Q 036746          246 QTFDVGST-YIEGEMPLDLGTTLPNLRIFSITGN  278 (281)
Q Consensus       246 ~~L~l~~n-~i~~~~p~~~~~~~~~L~~L~l~~N  278 (281)
                      ++|++++| .+++.....+. .+|+|+.|+++++
T Consensus       203 ~~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~  235 (284)
T d2astb2         203 QHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI  235 (284)
T ss_dssp             CEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred             CEEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC
Confidence            99999996 68766666665 6899999999986

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=1.4e-15  Score=127.98  Aligned_cols=208  Identities=19%  Similarity=0.216  Sum_probs=140.2

Q ss_pred             CCcEEEEEcCCCCceee----------cCccccCCCCCCEEeCCCCCCccC----CchhccCCCCCCEEEccCccCcccC
Q 036746           74 YQRVTILDLQNLKLVGT----------LSPHIGNLSFLQKLDLRNNSFTNA----IPPQIGHLRRLQILYLQINSFDGEI  139 (281)
Q Consensus        74 ~~~l~~L~l~~~~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~  139 (281)
                      .++++.++++++.....          +...+...++|++|++++|.+...    +...+...++|++|++++|.+....
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence            36777888776643211          223345677888888888877643    2234446788888888888764211


Q ss_pred             C----C---------CCCCCCCCcEEEccCCCCCCC----CCcccCCCCCCcEEeccccccccC-----CCcccCCCCCC
Q 036746          140 P----A---------STSNCSNLLVVSLALNHLVGK----IPSEFGSLSKLQFLSTTANNLIGN-----IPSSLGNLSSL  197 (281)
Q Consensus       140 ~----~---------~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L  197 (281)
                      .    .         .....+.|+.+.+++|.+...    +...+...+.|++|++++|.+...     +...+...++|
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L  217 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  217 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh
Confidence            0    0         013456788888888877632    223345678899999999887532     23446677899


Q ss_pred             CEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccccCh----hccC--CCCCcEEEcccCcccccCCh----hh
Q 036746          198 RGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPP----SIFN--ISSIQTFDVGSTYIEGEMPL----DL  263 (281)
Q Consensus       198 ~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~----~l~~--l~~L~~L~l~~n~i~~~~p~----~~  263 (281)
                      +.|++++|.++..    +...+..+++|++|++++|.+++....    .+..  .+.|++|++++|.|+.....    .+
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l  297 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  297 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHH
Confidence            9999999988643    445667889999999999998754333    2322  36799999999998854333    23


Q ss_pred             hhCCCCCCEEeccCccCC
Q 036746          264 GTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       264 ~~~~~~L~~L~l~~N~lt  281 (281)
                      ...+++|+.|++++|+++
T Consensus       298 ~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         298 DEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHCTTCCEEECTTSBSC
T ss_pred             HccCCCCCEEECCCCcCC
Confidence            335789999999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=1.8e-15  Score=127.34  Aligned_cols=207  Identities=13%  Similarity=0.105  Sum_probs=151.3

Q ss_pred             CcEEEEEcCCCCceee----cCccccCCCCCCEEeCCCCCCccC----------CchhccCCCCCCEEEccCccCccc--
Q 036746           75 QRVTILDLQNLKLVGT----LSPHIGNLSFLQKLDLRNNSFTNA----------IPPQIGHLRRLQILYLQINSFDGE--  138 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~l~~~--  138 (281)
                      ..++.|++++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.+...  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            5688999999987542    345577889999999998765421          223455788999999999998742  


Q ss_pred             --CCCCCCCCCCCcEEEccCCCCCCCCC----cc---------cCCCCCCcEEeccccccccC----CCcccCCCCCCCE
Q 036746          139 --IPASTSNCSNLLVVSLALNHLVGKIP----SE---------FGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRG  199 (281)
Q Consensus       139 --~~~~~~~l~~L~~L~l~~n~~~~~~~----~~---------l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~  199 (281)
                        +...+...++|++|++++|.+.....    ..         ....+.|+.+.+++|.+...    +...+...+.|++
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence              23344567899999999998752111    11         13567899999999877532    2233556789999


Q ss_pred             EEcccCcCccc-----CCccCCCCCCCCEEEcccCccccc----cChhccCCCCCcEEEcccCcccccCChhhhh-----
Q 036746          200 LSLSRNGFYGS-----IPDTFGGLKNLVNLSLVVNNLSGT----IPPSIFNISSIQTFDVGSTYIEGEMPLDLGT-----  265 (281)
Q Consensus       200 L~l~~n~~~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~~-----  265 (281)
                      |++++|.+...     +...+...++|+.|++++|.++..    +...+...++|++|++++|.|++.....+..     
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            99999998742     335567889999999999998643    4456778899999999999998654444321     


Q ss_pred             CCCCCCEEeccCccCC
Q 036746          266 TLPNLRIFSITGNQFT  281 (281)
Q Consensus       266 ~~~~L~~L~l~~N~lt  281 (281)
                      ..+.|++|++++|+++
T Consensus       271 ~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             SSCCCCEEECCSSCCB
T ss_pred             cCCCCCEEECCCCcCC
Confidence            3467999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-13  Score=99.62  Aligned_cols=109  Identities=17%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             CCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccc-cccCCCcccCCCCCCCEEEcccCcCcccCCccCCCCCCCCEE
Q 036746          146 CSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANN-LIGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL  224 (281)
Q Consensus       146 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  224 (281)
                      +.....++.+++.+. ..|..+..+++|++|++.+|. ++...+..|..+++|+.|++++|+++...|..|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            344556777777666 556667777778888776553 554444567777778888888887776566777777778888


Q ss_pred             EcccCccccccChhccCCCCCcEEEcccCccc
Q 036746          225 SLVVNNLSGTIPPSIFNISSIQTFDVGSTYIE  256 (281)
Q Consensus       225 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~  256 (281)
                      +|++|+++ .+|.......+|++|+|++|++.
T Consensus        86 ~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eccCCCCc-ccChhhhccccccccccCCCccc
Confidence            88887777 44544444456777777777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.44  E-value=6.3e-12  Score=104.91  Aligned_cols=188  Identities=22%  Similarity=0.231  Sum_probs=134.0

Q ss_pred             CcEEEEEcCCCCceeecCccccCCCCCCEEeCCCCCCccCCchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEc
Q 036746           75 QRVTILDLQNLKLVGTLSPHIGNLSFLQKLDLRNNSFTNAIPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSL  154 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  154 (281)
                      .++++|++++++++ .+|+.   .++|++|++++|.++ .+|..   +.+|+.|++++|.++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            36789999999986 57753   478999999999998 67754   468999999999988 55432   146999999


Q ss_pred             cCCCCCCCCCcccCCCCCCcEEeccccccccCC------------------CcccCCCCCCCEEEcccCcCccc------
Q 036746          155 ALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNI------------------PSSLGNLSSLRGLSLSRNGFYGS------  210 (281)
Q Consensus       155 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~------------------~~~l~~l~~L~~L~l~~n~~~~~------  210 (281)
                      ++|.+. .+|. ++.+++|+.+++.++.+....                  ...+..++.++.+++.+|.....      
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             cccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccc
Confidence            999998 5564 678999999999888765221                  12244556778888887765321      


Q ss_pred             ------------CCccCCCCCCCCEEEcccCccccc-------------------c---C--------------------
Q 036746          211 ------------IPDTFGGLKNLVNLSLVVNNLSGT-------------------I---P--------------------  236 (281)
Q Consensus       211 ------------~p~~~~~l~~L~~L~l~~n~l~~~-------------------~---p--------------------  236 (281)
                                  ....+..++.++.+++++|.....                   .   +                    
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~  263 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP  263 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                        011234567778887766543210                   0   0                    


Q ss_pred             --------------hhccCCCCCcEEEcccCcccccCChhhhhCCCCCCEEeccCccCC
Q 036746          237 --------------PSIFNISSIQTFDVGSTYIEGEMPLDLGTTLPNLRIFSITGNQFT  281 (281)
Q Consensus       237 --------------~~l~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~L~~L~l~~N~lt  281 (281)
                                    .....+++|++|++++|+++ .+|.    .+++|+.|++++|+|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~  317 (353)
T d1jl5a_         264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA  317 (353)
T ss_dssp             TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             chhcccccccCccccccccCCCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCC
Confidence                          00112368999999999998 7774    4789999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=1e-15  Score=118.65  Aligned_cols=113  Identities=27%  Similarity=0.297  Sum_probs=52.4

Q ss_pred             CchhccCCCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCC
Q 036746          115 IPPQIGHLRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNL  194 (281)
Q Consensus       115 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l  194 (281)
                      ++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++.....+++|+.|++++|.+.. + ..+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence            3344555555555555555554 332 3444555555555555544 233322333445555555554432 1 123444


Q ss_pred             CCCCEEEcccCcCcccCC-ccCCCCCCCCEEEcccCccc
Q 036746          195 SSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       195 ~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~  232 (281)
                      ++|++|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            455555555555542111 23444555555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=1.2e-15  Score=118.24  Aligned_cols=143  Identities=17%  Similarity=0.212  Sum_probs=109.9

Q ss_pred             CCEEEccCc--cCcccCCCCCCCCCCCcEEEccCCCCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEEEc
Q 036746          125 LQILYLQIN--SFDGEIPASTSNCSNLLVVSLALNHLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGLSL  202 (281)
Q Consensus       125 L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  202 (281)
                      .+.+++++.  .++ .++..+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+. .++.....+++|++|++
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEEC
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccc
Confidence            444555443  222 45566788999999999999998 444 5888999999999999987 55654555568999999


Q ss_pred             ccCcCcccCCccCCCCCCCCEEEcccCccccccC--hhccCCCCCcEEEcccCcccccCChh---------hhhCCCCCC
Q 036746          203 SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP--PSIFNISSIQTFDVGSTYIEGEMPLD---------LGTTLPNLR  271 (281)
Q Consensus       203 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~l~~n~i~~~~p~~---------~~~~~~~L~  271 (281)
                      ++|.++. ++ .+..+++|+.|++++|++++ ++  ..+..+++|+.|++++|++....+..         +...+|+|+
T Consensus       101 ~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         101 SYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             SEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             ccccccc-cc-cccccccccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            9999984 33 46778999999999999984 33  46889999999999999987543322         234789999


Q ss_pred             EEe
Q 036746          272 IFS  274 (281)
Q Consensus       272 ~L~  274 (281)
                      .||
T Consensus       178 ~LD  180 (198)
T d1m9la_         178 KLD  180 (198)
T ss_dssp             EES
T ss_pred             EeC
Confidence            987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.3e-12  Score=93.97  Aligned_cols=109  Identities=19%  Similarity=0.064  Sum_probs=90.4

Q ss_pred             CCCCCEEEccCccCcccCCCCCCCCCCCcEEEccCC-CCCCCCCcccCCCCCCcEEeccccccccCCCcccCCCCCCCEE
Q 036746          122 LRRLQILYLQINSFDGEIPASTSNCSNLLVVSLALN-HLVGKIPSEFGSLSKLQFLSTTANNLIGNIPSSLGNLSSLRGL  200 (281)
Q Consensus       122 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  200 (281)
                      +...+.++.+++.+. ..|..+..+++|++|++.+| .++...+..|..+++|+.|++++|++....+..|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            445667888888887 77888989999999999766 4776656779999999999999999987778889999999999


Q ss_pred             EcccCcCcccCCccCCCCCCCCEEEcccCccc
Q 036746          201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS  232 (281)
Q Consensus       201 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  232 (281)
                      ++++|+++ .+|.......+|+.|++++|.+.
T Consensus        86 ~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eccCCCCc-ccChhhhccccccccccCCCccc
Confidence            99999998 55544444457999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.8e-13  Score=115.65  Aligned_cols=85  Identities=21%  Similarity=0.284  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCCCcee----ecCccccCCCCCCEEeCCCCCCccC----Cchhcc-CCCCCCEEEccCccCccc----CCC
Q 036746           75 QRVTILDLQNLKLVG----TLSPHIGNLSFLQKLDLRNNSFTNA----IPPQIG-HLRRLQILYLQINSFDGE----IPA  141 (281)
Q Consensus        75 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~~~----~~~  141 (281)
                      ++++.|++++|+++.    .++..+..+++|++|+|++|.+...    +...+. ...+|++|++++|.++..    ++.
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            567788888888763    3344566788888888888877521    122222 234788899988888632    345


Q ss_pred             CCCCCCCCcEEEccCCCC
Q 036746          142 STSNCSNLLVVSLALNHL  159 (281)
Q Consensus       142 ~~~~l~~L~~L~l~~n~~  159 (281)
                      .+..+++|++|++++|.+
T Consensus       107 ~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HTTSCTTCCEEECCSSBC
T ss_pred             hhhccccccccccccccc
Confidence            677788899998888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.7e-11  Score=105.63  Aligned_cols=186  Identities=17%  Similarity=0.146  Sum_probs=110.3

Q ss_pred             cCCCCCCEEeCCCCCCccC-----CchhccCCCCCCEEEccCccCccc----CCCCCCCCCCCcEEEccCCCCCCCCC--
Q 036746           96 GNLSFLQKLDLRNNSFTNA-----IPPQIGHLRRLQILYLQINSFDGE----IPASTSNCSNLLVVSLALNHLVGKIP--  164 (281)
Q Consensus        96 ~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~--  164 (281)
                      .....++.+++.+|.+...     ..........++.+++++|.+...    ....+...+.++.+++++|.+.....  
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~  302 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL  302 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            3455667777776655321     222333456777777777766521    12223456677777777776642111  


Q ss_pred             --ccc-CCCCCCcEEeccccccccCCCc----ccCCCCCCCEEEcccCcCccc----CCccCC-CCCCCCEEEcccCccc
Q 036746          165 --SEF-GSLSKLQFLSTTANNLIGNIPS----SLGNLSSLRGLSLSRNGFYGS----IPDTFG-GLKNLVNLSLVVNNLS  232 (281)
Q Consensus       165 --~~l-~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~----~p~~~~-~l~~L~~L~l~~n~l~  232 (281)
                        ..+ .....|+.++++++.+......    .+...++|++|++++|.+.+.    +++.+. ..+.|++|++++|.++
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence              111 2335678888887766543222    233445788888888887642    333333 3567888888888886


Q ss_pred             cc----cChhccCCCCCcEEEcccCcccccCChhhh----hCCCCCCEEeccCccCC
Q 036746          233 GT----IPPSIFNISSIQTFDVGSTYIEGEMPLDLG----TTLPNLRIFSITGNQFT  281 (281)
Q Consensus       233 ~~----~p~~l~~l~~L~~L~l~~n~i~~~~p~~~~----~~~~~L~~L~l~~N~lt  281 (281)
                      +.    ++..+...++|++||+++|+|++.....+.    ....+|+.|++.+|.++
T Consensus       383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            42    334455667888888888888754444332    13346888888887763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-09  Score=81.09  Aligned_cols=83  Identities=18%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             CCCCCCCEEEcccCcCccc--CCccCCCCCCCCEEEcccCccccccChhccCCCCCcEEEcccCcccccCCh------hh
Q 036746          192 GNLSSLRGLSLSRNGFYGS--IPDTFGGLKNLVNLSLVVNNLSGTIPPSIFNISSIQTFDVGSTYIEGEMPL------DL  263 (281)
Q Consensus       192 ~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~i~~~~p~------~~  263 (281)
                      ..+++|++|++++|+++..  ++..+..+++|+.|++++|.++..-+........|+.|++++|++.+....      .+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4567788888888877633  233455677888888888888743222333445688888888888754332      23


Q ss_pred             hhCCCCCCEEe
Q 036746          264 GTTLPNLRIFS  274 (281)
Q Consensus       264 ~~~~~~L~~L~  274 (281)
                      ...+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45788888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.3e-08  Score=75.31  Aligned_cols=83  Identities=12%  Similarity=0.074  Sum_probs=59.0

Q ss_pred             CCCEEEcccCcCcccCCccCCCCCCCCEEEcccCccccc--cChhccCCCCCcEEEcccCcccccCCh-hhhhCCCCCCE
Q 036746          196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT--IPPSIFNISSIQTFDVGSTYIEGEMPL-DLGTTLPNLRI  272 (281)
Q Consensus       196 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~l~~n~i~~~~p~-~~~~~~~~L~~  272 (281)
                      .+..++...+... .++.....+++|++|++++|+++..  ++..+..+++|+.|++++|.|+ .++. ... ...+|+.
T Consensus        43 ~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l-~~~~L~~  119 (162)
T d1koha1          43 IDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKI-KGLKLEE  119 (162)
T ss_dssp             CCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHH-TTCCCSS
T ss_pred             chhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhh-hccccce
Confidence            3333444333322 3333445688999999999999843  2355678999999999999999 4544 333 5678999


Q ss_pred             EeccCccCC
Q 036746          273 FSITGNQFT  281 (281)
Q Consensus       273 L~l~~N~lt  281 (281)
                      |++++|+++
T Consensus       120 L~L~~Npl~  128 (162)
T d1koha1         120 LWLDGNSLS  128 (162)
T ss_dssp             CCCTTSTTS
T ss_pred             eecCCCCcC
Confidence            999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.92  E-value=2.9e-06  Score=62.51  Aligned_cols=110  Identities=11%  Similarity=0.041  Sum_probs=53.5

Q ss_pred             CCCCCcEEEccCC-CCCCC----CCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc----C
Q 036746          145 NCSNLLVVSLALN-HLVGK----IPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----I  211 (281)
Q Consensus       145 ~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~  211 (281)
                      +.++|++|+++++ .+...    +...+...+.|+.|++++|.+...    +...+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3466777777653 34311    122344555666666666655421    112233345566666666665532    2


Q ss_pred             CccCCCCCCCCEEEcccCcccc-------ccChhccCCCCCcEEEcccCc
Q 036746          212 PDTFGGLKNLVNLSLVVNNLSG-------TIPPSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       212 p~~~~~l~~L~~L~l~~n~l~~-------~~p~~l~~l~~L~~L~l~~n~  254 (281)
                      -..+...++|++|++++|.+..       .+...+..-++|+.|+++++.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            2334455556666665554321       122333344555566555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=1.8e-06  Score=63.72  Aligned_cols=85  Identities=15%  Similarity=0.109  Sum_probs=40.5

Q ss_pred             CCCCcEEecccc-ccccC----CCcccCCCCCCCEEEcccCcCcccC----CccCCCCCCCCEEEcccCcccccc----C
Q 036746          170 LSKLQFLSTTAN-NLIGN----IPSSLGNLSSLRGLSLSRNGFYGSI----PDTFGGLKNLVNLSLVVNNLSGTI----P  236 (281)
Q Consensus       170 l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~l~~n~l~~~~----p  236 (281)
                      .++|++|+++++ .+...    +...+...+.|++|++++|.+....    .+.+...+.|++|++++|.+++..    .
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455666666543 22211    1223444455666666666554221    122333455666666666555321    2


Q ss_pred             hhccCCCCCcEEEcccCc
Q 036746          237 PSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       237 ~~l~~l~~L~~L~l~~n~  254 (281)
                      ..+...++|++|++++|.
T Consensus        94 ~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHTTTTCCCSEEECCCCS
T ss_pred             HHHHhCCcCCEEECCCCc
Confidence            234444556666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.57  E-value=7.5e-06  Score=60.07  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             CCCCCcEEEccC-CCCCC----CCCcccCCCCCCcEEeccccccccC----CCcccCCCCCCCEEEcccCcCccc----C
Q 036746          145 NCSNLLVVSLAL-NHLVG----KIPSEFGSLSKLQFLSTTANNLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----I  211 (281)
Q Consensus       145 ~l~~L~~L~l~~-n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~  211 (281)
                      +.++|++|++++ +.++.    .+...+...+.|++|++++|.+...    +...+...+.++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            456666666665 33431    1222334555666666666655322    112233345556666655555422    2


Q ss_pred             CccCCCCCCCCEEEcc--cCcccc----ccChhccCCCCCcEEEcccCc
Q 036746          212 PDTFGGLKNLVNLSLV--VNNLSG----TIPPSIFNISSIQTFDVGSTY  254 (281)
Q Consensus       212 p~~~~~l~~L~~L~l~--~n~l~~----~~p~~l~~l~~L~~L~l~~n~  254 (281)
                      ...+...++|+.++|+  +|.+.+    .+...+...++|++|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            2334444555544432  333432    122333344555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.44  E-value=7.5e-06  Score=60.08  Aligned_cols=110  Identities=12%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             CCCCCcEEecccc-ccccC----CCcccCCCCCCCEEEcccCcCccc----CCccCCCCCCCCEEEcccCccccc----c
Q 036746          169 SLSKLQFLSTTAN-NLIGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----I  235 (281)
Q Consensus       169 ~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~  235 (281)
                      +.++|++|+++++ .+...    +...+...+.|++|++++|.+...    +-..+...+.++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4456666666542 23211    223344455666666666655432    112233445566666666655432    1


Q ss_pred             ChhccCCCCCcEEEc--ccCcccccCChhh---hhCCCCCCEEeccCc
Q 036746          236 PPSIFNISSIQTFDV--GSTYIEGEMPLDL---GTTLPNLRIFSITGN  278 (281)
Q Consensus       236 p~~l~~l~~L~~L~l--~~n~i~~~~p~~~---~~~~~~L~~L~l~~N  278 (281)
                      ...+...++|+.++|  ++|.+.......+   ....++|+.|+++.+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            233444555555444  3444443221111   124556666666544