Citrus Sinensis ID: 036755

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MNSVSESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHINF
cccHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccc
cccHHHHHcccccccccEEEccccccccccHHccccccccccccccccccccEEEcccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEccEEEccccccccHHcEEEEEEccHHHHHcccccccccccc
mnsvsesyknnplhlkhiipldfktalklpdshawtlpdhpmadplthaavpvidlgspqAATLIRQACEKWGafqvtnhgipikllNQVEFQTRRLFALPanqkllagrspedftgyglpriSTFFSKLMWTegftilgspldharqlwpheydhinf
mnsvsesyknnplhlKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPanqkllagrspedftgyGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHINF
MNSVSESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHINF
************LHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEY*****
****************************L***HAWTLPD*******THAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQK***********GYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEY*****
*********NNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHINF
*****ESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHINF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNSVSESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHINF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query159 2.2.26 [Sep-21-2011]
Q9SVS8 349 Gibberellin 3-beta-dioxyg yes no 0.962 0.438 0.493 7e-40
Q39103 358 Gibberellin 3-beta-dioxyg no no 0.968 0.430 0.440 7e-35
Q9ZT84 347 Gibberellin 3-beta-dioxyg no no 0.943 0.432 0.448 4e-34
Q3I409 369 Gibberellin 3-beta-dioxyg N/A no 0.861 0.371 0.445 2e-27
Q3I410 370 Gibberellin 3-beta-dioxyg N/A no 0.861 0.370 0.445 1e-25
Q9C971 355 Gibberellin 3-beta-dioxyg no no 0.811 0.363 0.435 2e-25
Q3I411 370 Gibberellin 3-beta-dioxyg N/A no 0.861 0.370 0.445 2e-25
Q9SQ80 327 Gibberellin 2-beta-dioxyg N/A no 0.773 0.376 0.361 3e-14
D4N502 360 Codeine O-demethylase OS= N/A no 0.628 0.277 0.375 6e-13
O04705 361 Gibberellin 20 oxidase 1- N/A no 0.742 0.326 0.338 1e-10
>sp|Q9SVS8|G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1 Back     alignment and function desciption
 Score =  162 bits (411), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 110/160 (68%), Gaps = 7/160 (4%)

Query: 1   MNSVSESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQ 60
           M+SV++ +KNNP++   IIPLDF     LPDSH W+ P+       T   +PVI L +P+
Sbjct: 1   MSSVTQLFKNNPVNRDRIIPLDFTNTKTLPDSHVWSKPE----PETTSGPIPVISLSNPE 56

Query: 61  AATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGL 120
              L+RQACE+WG F +T+HG+   LL+ V+ Q +RLF+LP ++K+LA RSP++ TGYG+
Sbjct: 57  EHGLLRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGV 116

Query: 121 PRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHINF 159
            RIS F+ KLMW+EGF+++GS L  HA  LWP   DH  F
Sbjct: 117 VRISMFYDKLMWSEGFSVMGSSLRRHATLLWPD--DHAEF 154
Converts the inactive gibbberellin precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 5
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZT84|G3OX2_ARATH Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2 Back     alignment and function description
>sp|Q3I409|G3O23_WHEAT Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q3I410|G3O22_WHEAT Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9C971|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1 Back     alignment and function description
>sp|Q3I411|G3O21_WHEAT Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SQ80|G2OX1_PEA Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query159
224141841 341 gibberellin 3-oxidase [Populus trichocar 0.911 0.425 0.527 2e-44
356507772 341 PREDICTED: gibberellin 3-beta-dioxygenas 0.968 0.451 0.564 1e-43
50428333 344 gibberellin 3beta-hydroxylase3 [Daucus c 0.955 0.441 0.537 1e-42
147852208 365 hypothetical protein VITISV_028510 [Viti 0.943 0.410 0.559 3e-42
359482967 365 PREDICTED: gibberellin 3-beta-dioxygenas 0.943 0.410 0.559 3e-42
255546615 356 gibberellin 3-beta hydroxylase, putative 0.930 0.415 0.575 4e-42
255549006 354 gibberellin 3-beta hydroxylase, putative 0.930 0.418 0.588 6e-42
145206861 377 gibberellin 3-beta-hydroxylase [Medicago 0.962 0.405 0.524 3e-41
145206857 377 gibberellin 3-beta-hydroxylase [Medicago 0.962 0.405 0.518 4e-41
365176184 368 gibberellin 3 oxidase 1 [Castanea mollis 0.930 0.402 0.545 6e-41
>gi|224141841|ref|XP_002324270.1| gibberellin 3-oxidase [Populus trichocarpa] gi|222865704|gb|EEF02835.1| gibberellin 3-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 112/161 (69%), Gaps = 16/161 (9%)

Query: 1   MNSVSESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHA-------AVPV 53
           M+++SE+Y+++PLHL HIIPLDF +   +PDSH W         P +HA       ++P 
Sbjct: 1   MSALSEAYRDHPLHLHHIIPLDFDSVRTVPDSHVW---------PTSHAFESDDQLSIPT 51

Query: 54  IDLGSPQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPE 113
           +DL  P A  L+  ACE WG FQV NHGIP+ ++++VE + RRLF+LP   KL A RSP 
Sbjct: 52  VDLMDPDAVKLVGHACETWGVFQVINHGIPLDIIDEVESEARRLFSLPTGHKLKALRSPG 111

Query: 114 DFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEY 154
             TGYGL RIS FFSK MW EGFT++GSP+DHAR+LWP++Y
Sbjct: 112 GATGYGLARISPFFSKKMWHEGFTVMGSPVDHARELWPNDY 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356507772|ref|XP_003522638.1| PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|50428333|dbj|BAD30037.1| gibberellin 3beta-hydroxylase3 [Daucus carota] Back     alignment and taxonomy information
>gi|147852208|emb|CAN80137.1| hypothetical protein VITISV_028510 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482967|ref|XP_002284963.2| PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Vitis vinifera] gi|297743334|emb|CBI36201.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546615|ref|XP_002514367.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] gi|223546823|gb|EEF48321.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255549006|ref|XP_002515559.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] gi|223545503|gb|EEF47008.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|145206861|gb|ABP37820.1| gibberellin 3-beta-hydroxylase [Medicago sativa subsp. caerulea] Back     alignment and taxonomy information
>gi|145206857|gb|ABP37818.1| gibberellin 3-beta-hydroxylase [Medicago falcata] Back     alignment and taxonomy information
>gi|365176184|gb|AEW67998.1| gibberellin 3 oxidase 1 [Castanea mollissima] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query159
TAIR|locus:2119068 349 GA3OX3 "gibberellin 3-oxidase 0.962 0.438 0.5 2.9e-39
TAIR|locus:2196623 358 GA3OX1 "gibberellin 3-oxidase 0.962 0.427 0.450 8.3e-35
TAIR|locus:2034205 347 GA3OX2 "gibberellin 3-oxidase 0.943 0.432 0.448 2.8e-34
UNIPROTKB|Q9FU53 373 P0013F10.29 "GA 3beta-hydroxyl 0.905 0.386 0.463 2e-31
TAIR|locus:2034195 355 GA3OX4 "gibberellin 3-oxidase 0.811 0.363 0.435 2.9e-25
UNIPROTKB|Q6AT12 384 OSJNBa0029B02.17 "Putative gib 0.842 0.348 0.361 5.5e-18
TAIR|locus:2042942 353 AT2G38240 [Arabidopsis thalian 0.635 0.286 0.345 2.6e-12
TAIR|locus:2198258 341 GA2OX2 "gibberellin 2-oxidase" 0.685 0.319 0.348 5.1e-12
TAIR|locus:2159542 336 FLS1 "flavonol synthase 1" [Ar 0.679 0.321 0.336 1.7e-10
TAIR|locus:2086789 361 AT3G13610 [Arabidopsis thalian 0.786 0.346 0.309 3.4e-10
TAIR|locus:2119068 GA3OX3 "gibberellin 3-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 80/160 (50%), Positives = 111/160 (69%)

Query:     1 MNSVSESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDHPMADPLTHAAVPVIDLGSPQ 60
             M+SV++ +KNNP++   IIPLDF     LPDSH W+ P+ P     T   +PVI L +P+
Sbjct:     1 MSSVTQLFKNNPVNRDRIIPLDFTNTKTLPDSHVWSKPE-PET---TSGPIPVISLSNPE 56

Query:    61 AATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGL 120
                L+RQACE+WG F +T+HG+   LL+ V+ Q +RLF+LP ++K+LA RSP++ TGYG+
Sbjct:    57 EHGLLRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGV 116

Query:   121 PRISTFFSKLMWTEGFTILGSPLD-HARQLWPHEYDHINF 159
              RIS F+ KLMW+EGF+++GS L  HA  LWP   DH  F
Sbjct:   117 VRISMFYDKLMWSEGFSVMGSSLRRHATLLWPD--DHAEF 154
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2196623 GA3OX1 "gibberellin 3-oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034205 GA3OX2 "gibberellin 3-oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FU53 P0013F10.29 "GA 3beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2034195 GA3OX4 "gibberellin 3-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AT12 OSJNBa0029B02.17 "Putative gibberellin 3 beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198258 GA2OX2 "gibberellin 2-oxidase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159542 FLS1 "flavonol synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086789 AT3G13610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
PLN02254 358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-79
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-29
PLN02276 361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-16
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 7e-15
PLN02393 362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-13
PLN02639 337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 9e-13
PLN02156 335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-12
PLN02984 341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-12
PLN02704 335 PLN02704, PLN02704, flavonol synthase 3e-11
PLN02997 325 PLN02997, PLN02997, flavonol synthase 4e-11
PLN02365 300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-10
COG3491 322 COG3491, PcbC, Isopenicillin N synthase and relate 7e-10
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-09
PLN02216 357 PLN02216, PLN02216, protein SRG1 4e-09
PLN02750 345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 5e-09
PLN00417 348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-08
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-08
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 3e-08
PLN02947 374 PLN02947, PLN02947, oxidoreductase 3e-08
PLN02904 357 PLN02904, PLN02904, oxidoreductase 1e-07
PLN02403 303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-07
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-07
PLN02485 329 PLN02485, PLN02485, oxidoreductase 7e-07
PTZ00273 320 PTZ00273, PTZ00273, oxidase reductase; Provisional 7e-06
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-04
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information 
 Score =  238 bits (608), Expect = 4e-79
 Identities = 90/156 (57%), Positives = 116/156 (74%), Gaps = 5/156 (3%)

Query: 4   VSESYKNNPLHLKHIIPLDFKTALKLPDSHAWT-----LPDHPMADPLTHAAVPVIDLGS 58
           +S++++++PLHL HIIPLDF +   LPDSH WT     L     +   T  ++PVIDL  
Sbjct: 5   LSDAFRSHPLHLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSD 64

Query: 59  PQAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGY 118
           P A TLI  ACE WG FQVTNHGIP+ LL+ +E QTRRLF+LPA +KL A RSP+  +GY
Sbjct: 65  PNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGY 124

Query: 119 GLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEY 154
           G+ RIS+FF+K MW+EGFTI+GSPL+HARQLWP ++
Sbjct: 125 GVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDH 160

Length = 358
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 159
PLN02254 358 gibberellin 3-beta-dioxygenase 99.97
PLN02216 357 protein SRG1 99.96
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.96
PLN02393 362 leucoanthocyanidin dioxygenase like protein 99.96
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.96
PLN02947 374 oxidoreductase 99.95
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 99.95
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 99.95
PLN02904 357 oxidoreductase 99.95
PLN02276 361 gibberellin 20-oxidase 99.94
PLN02704 335 flavonol synthase 99.94
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.94
PLN02639 337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.94
PLN00417 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.94
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.93
KOG0143 322 consensus Iron/ascorbate family oxidoreductases [S 99.92
PTZ00273 320 oxidase reductase; Provisional 99.92
PLN02485 329 oxidoreductase 99.91
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.91
PLN02997 325 flavonol synthase 99.91
PLN03176120 flavanone-3-hydroxylase; Provisional 99.9
PLN02156 335 gibberellin 2-beta-dioxygenase 99.9
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 99.9
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 99.89
PLN02403 303 aminocyclopropanecarboxylate oxidase 99.86
PLN02984 341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.85
PLN02365 300 2-oxoglutarate-dependent dioxygenase 99.84
PLN03001 262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 98.75
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information 
Probab=99.97  E-value=1.7e-31  Score=223.91  Aligned_cols=156  Identities=58%  Similarity=1.071  Sum_probs=128.0

Q ss_pred             cccccccCCCCCccccccccccCCCCCCCCCccCCCCC--CCCC---CCCCCCcceeeCCChHHHHHHHHHHHHcCeEEE
Q 036755            3 SVSESYKNNPLHLKHIIPLDFKTALKLPDSHAWTLPDH--PMAD---PLTHAAVPVIDLGSPQAATLIRQACEKWGAFQV   77 (159)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~i~~~~~~--~~~~---~~~~~~iPvIDls~~~~~~~l~~A~~~~GFF~l   77 (159)
                      |++..---+|++..+|+.+..+++.+||..|++|+.++  +...   ......||||||+..+.+++|++||++||||||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~~~~~~l~~Ac~~~GFF~v   83 (358)
T PLN02254          4 TLSDAFRSHPLHLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDPNALTLIGHACETWGVFQV   83 (358)
T ss_pred             chhhhhccCCcccccccccchhhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCHHHHHHHHHHHHHCCEEEE
Confidence            45566666788888866566666778999999999887  4321   123457999999988889999999999999999


Q ss_pred             eecCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCCCccccCCCccccCCCCCeeeeEeeccCCCCCcCCCCCCCCCCC
Q 036755           78 TNHGIPIKLLNQVEFQTRRLFALPANQKLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHI  157 (159)
Q Consensus        78 ~nHGI~~eli~~~~~~s~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~~~n~WP~~~~~f  157 (159)
                      +||||++++++++++.+++||+||.|+|+++......++||+.........+.||+|+|.+...|.....|.||+++++|
T Consensus        84 vnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~f  163 (358)
T PLN02254         84 TNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKF  163 (358)
T ss_pred             EcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCccccchhhCCCCchHH
Confidence            99999999999999999999999999999987666667899876654445668999999987666545679999988888


Q ss_pred             C
Q 036755          158 N  158 (159)
Q Consensus       158 r  158 (159)
                      |
T Consensus       164 r  164 (358)
T PLN02254        164 C  164 (358)
T ss_pred             H
Confidence            6

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
1w9y_A 319 The Structure Of Acc Oxidase Length = 319 7e-05
2brt_A 355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-04
1gp5_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-04
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 52  PVIDL----GSPQAATL--IRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQK 105
           P+I L    G  +AAT   I+ ACE WG F++ NHGIP ++ + VE  T+  +     Q+
Sbjct: 5   PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR 64
Query: 106 ---LLAGRSPE 113
              L+A ++ E
Sbjct: 65  FKELVASKALE 75
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-28
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 6e-28
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 3e-18
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-16
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 4e-15
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  105 bits (264), Expect = 3e-28
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 51  VPVIDLGSP------QAATLIRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQ 104
            P+I L             +I+ ACE WG F++ NHGIP ++++ VE  T+  +     Q
Sbjct: 4   FPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQ 63

Query: 105 KLLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDH 156
           +     + +   G          + + W   F +   P+ +  +  P   + 
Sbjct: 64  RFKELVASKALEGVQ-----AEVTDMDWESTFFLKHLPISNISE-VPDLDEE 109
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query159
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 99.96
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 99.93
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 99.9
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 99.9
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 99.9
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 99.88
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=99.96  E-value=2.5e-30  Score=215.42  Aligned_cols=139  Identities=22%  Similarity=0.388  Sum_probs=115.4

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCCC---CC----CCCcceeeCCCh---------HHHHHHHHHHHHcCeEEEeecCCC
Q 036755           20 PLDFKTALKLPDSHAWTLPDHPMADP---LT----HAAVPVIDLGSP---------QAATLIRQACEKWGAFQVTNHGIP   83 (159)
Q Consensus        20 ~l~~~~~~~~p~~~i~~~~~~~~~~~---~~----~~~iPvIDls~~---------~~~~~l~~A~~~~GFF~l~nHGI~   83 (159)
                      .|..+++..||+.|++|+.+++.+..   ..    ...||||||+..         +++++|++||++||||||+||||+
T Consensus         9 ~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~   88 (356)
T 1gp6_A            9 SLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIP   88 (356)
T ss_dssp             HHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCC
T ss_pred             HHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCC
Confidence            67788899999999999887776422   01    246999999862         378999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCHHHHhhcCCCC--CCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755           84 IKLLNQVEFQTRRLFALPANQKLLAGRSP--EDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN  158 (159)
Q Consensus        84 ~eli~~~~~~s~~FF~LP~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr  158 (159)
                      .++++++++.+++||+||.|+|+++.+..  ..++||+........+..||+|+|+++..|. ....|.||+.+++||
T Consensus        89 ~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr  166 (356)
T 1gp6_A           89 ADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI  166 (356)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhh
Confidence            99999999999999999999999998653  3689999876544456789999999976554 246799999988885
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 159
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-16
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-14
d1gp6a_ 349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-14
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-11
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Deacetoxycephalosporin C synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 71.6 bits (174), Expect = 4e-16
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 4/114 (3%)

Query: 49  AAVPVIDLGSPQAATL---IRQACEKWGAFQVTNHGIPIKLLNQVEFQTRRLFALPANQK 105
             VP   L   Q        R+     G F +T+ G+    L   +      F   +  +
Sbjct: 3   TTVPTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAE 62

Query: 106 LLAGRSPEDFTGYGLPRISTFFSKLMWTEGFTILGSPLDHARQLWPHEYDHINF 159
             A  SP      G   + +  +  +   G     S          + +   +F
Sbjct: 63  KRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGT-ADNLFPSGDF 115
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query159
d1gp6a_ 349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 99.95
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 99.85
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.82
d1odma_ 329 Isopenicillin N synthase {Emericella nidulans [Tax 99.74
d1vm6a3128 Dihydrodipicolinate reductase {Thermotoga maritima 87.43
d1diha1162 Dihydrodipicolinate reductase {Escherichia coli [T 81.83
d1yl7a1135 Dihydrodipicolinate reductase {Mycobacterium tuber 81.19
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=2.3e-28  Score=199.20  Aligned_cols=139  Identities=22%  Similarity=0.388  Sum_probs=111.7

Q ss_pred             cccccCCCCCCCCCccCCCCCCCCC-------CCCCCCcceeeCCCh---------HHHHHHHHHHHHcCeEEEeecCCC
Q 036755           20 PLDFKTALKLPDSHAWTLPDHPMAD-------PLTHAAVPVIDLGSP---------QAATLIRQACEKWGAFQVTNHGIP   83 (159)
Q Consensus        20 ~l~~~~~~~~p~~~i~~~~~~~~~~-------~~~~~~iPvIDls~~---------~~~~~l~~A~~~~GFF~l~nHGI~   83 (159)
                      -|+.||+.+||++|++|+.++|.+.       .....+||||||+..         +++++|++||+++|||||+||||+
T Consensus         8 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~   87 (349)
T d1gp6a_           8 SLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIP   87 (349)
T ss_dssp             HHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCC
T ss_pred             HHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCC
Confidence            6889999999999999999988762       345678999999862         478999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCHHHHhhcCCCC--CCCccccCCCccccCCCCCeeeeEeeccCCC-CCcCCCCCCCCCCCC
Q 036755           84 IKLLNQVEFQTRRLFALPANQKLLAGRSP--EDFTGYGLPRISTFFSKLMWTEGFTILGSPL-DHARQLWPHEYDHIN  158 (159)
Q Consensus        84 ~eli~~~~~~s~~FF~LP~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~-~~~~n~WP~~~~~fr  158 (159)
                      .++++++++++++||+||.|+|+++....  +.+.||+........+..+|.+.+.....+. ....|.||+.+++|+
T Consensus        88 ~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~  165 (349)
T d1gp6a_          88 ADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI  165 (349)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchHH
Confidence            99999999999999999999999997542  3455666554444445677777655443333 356799999988874
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure