Citrus Sinensis ID: 036766

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccEEEEcccccccccEEEEEEEccccccEEcccccEEEEEcccEEEEEcccccccEEEEEccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccEEEcccEEEcccEEEEEEEEccccEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccccHHHccccccccccEEEccEEEEccccEEEccccccccccHHHHHHHHHHHHHHccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccHHHHHccccccccccccccccccccccEEEEccccccEEcccEEccccccccccccccccccccccccccEEccccccccccEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEccEEEEEEcccccccHHHHHcccccEEccccEEEEEcccccccccccccccccccccccccccHHcccccccccHHcccccccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHHcccEEEEEccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHcHHHHHccc
Coil and Loop (DISEMBL)
MLGVIRRRvasggspasilghslqtmrpamsvsrvssiagketllhsrglghirnfshlifpgcskgcqplrDVISSTQKATNmylwshpfsseggdlVDAVVpfmgesitdgtlakflkgpgdrveldepiaqietdkvtidvaspeAGVIKELVAkegetvepgtKIAVISKsgegvahvapsekipekaapkppsaekakedkpqpkvetvsekpkapsppppkrtatepqlppkererrvpmTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSglqnqpiinavidgddiiyrdYIDISIAvgtskglvvpvirnadkmnfADIEKEINTLAKkandgsisidemaggsftisnggvygsllstpiinppqsailgmhsivqrpmvvggnvvprpMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI
Flexible Loop (DISEMBL)
MLGVIRRrvasggspasilghslqtmRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELdepiaqietdkvtidvasPEAGVIKElvakegetvepgTKIAVISKSGEGVAHVapsekipekaapkppsaekakedkpqpkvetvsekpkapsppppkrtatepqlppkererrvpmtrlrkrvatrlkdsqntfamlttfnevdmTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAvgtskglvvPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRrikdvveeprrllldi
Low Complexity Region (SEG)
MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVAHVapsekipekaapkppsaekakeDKPQPKVETVsekpkapsppppkrtatepQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVidgddiiyrdyidiSIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI
Disordered region (IsUnstruct)
**************************************AGKETLLHSRGLGHIRNFSHLIFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK**********I********************************************************************************************NTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVE*********
Disordered Region (DISOPRED)
***********************************************************************************************GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTK********************************************************************************LRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI
Disordered Region (DISEMBL)
*************SPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK*******************************************************************RRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI
Disordered Region (DISPRO)
MLGVIRRRVASG**********LQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIFPGCS**************************SSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK*********************************************************************VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
Q8H107	464	Dihydrolipoyllysine-resid	yes	no	0.974	0.987	0.698	0.0
Q9FLQ4	464	Dihydrolipoyllysine-resid	no	no	0.976	0.989	0.718	1e-180
Q90512	409	Dihydrolipoyllysine-resid	N/A	no	0.787	0.904	0.537	1e-104
Q1RHI5	400	Dihydrolipoyllysine-resid	yes	no	0.778	0.915	0.487	1e-102
Q6FYD4	410	Dihydrolipoyllysine-resid	yes	no	0.782	0.897	0.477	1e-101
P11179	455	Dihydrolipoyllysine-resid	yes	no	0.787	0.813	0.5	1e-100
Q869Y7	439	Dihydrolipoyllysine-resid	yes	no	0.778	0.833	0.509	1e-100
Q8GCY1	411	Dihydrolipoyllysine-resid	N/A	no	0.782	0.895	0.474	1e-98
Q9D2G2	454	Dihydrolipoyllysine-resid	yes	no	0.793	0.821	0.492	6e-98
Q4UKI7	401	Dihydrolipoyllysine-resid	yes	no	0.776	0.910	0.470	7e-98

>sp|Q8H107|ODO2B_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial OS=Arabidopsis thaliana GN=At4g26910 PE=1 SV=2

 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/475 (69%), Positives = 387/475 (81%), Gaps = 17/475 (3%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLI 60
           M+  + RR AS GS  S+   SLQ+ R  ++ S  S ++G ET  +     H  +F +L 
Sbjct: 2   MMRAVIRRAASNGSSPSLFAKSLQSSR--VAASSPSLLSGSETGAYLHRGNHAHSFHNLA 59

Query: 61  FPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLK 120
            P  + G      ++SST     +  W  PFS+E GD V+AVVP MGESITDGTLA FLK
Sbjct: 60  LPAGNSGISRSASLVSST-----LQRWVRPFSAETGDTVEAVVPHMGESITDGTLATFLK 114

Query: 121 GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 180
            PG+RV+ DE IAQIETDKVTID+ASP +GVI+E +  EG+TVEPGTK+A+ISKS +  +
Sbjct: 115 KPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVNEGDTVEPGTKVAIISKSEDTAS 174

Query: 181 HVAPSEKIPEKA--APKPPSAEKAKEDKPQPKVET--VSEKPKAPSPPPPKRTAT-EPQL 235
            V PS+KIPE     P PP+     EDK +P+VE+  V+EKPKAPS PPP + +  EPQL
Sbjct: 175 QVTPSQKIPETTDTKPSPPA-----EDKQKPRVESAPVAEKPKAPSSPPPPKQSAKEPQL 229

Query: 236 PPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGV 295
           PPKERERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRS+YKDAF EKHGV
Sbjct: 230 PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGV 289

Query: 296 KLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKM 355
           KLGLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDY+DISIAVGTSKGLVVPVIR ADKM
Sbjct: 290 KLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKM 349

Query: 356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHS 415
           NFA+IEK IN+LAKKAN+G+ISIDEMAGGSFT+SNGGVYGSL+STPIINPPQSAILGMHS
Sbjct: 350 NFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHS 409

Query: 416 IVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           IV RPMVVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRR+KDVVE+P+RLLLDI
Sbjct: 410 IVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 464

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 6EC: 1

>sp|Q9FLQ4|ODO2A_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana GN=At5g55070 PE=1 SV=1

 Score =  631 bits (1627), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 340/473 (71%), Positives = 386/473 (81%), Gaps = 14/473 (2%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLI 60
           +  V RR    G S AS LG SLQ+ R A+S ++  S++  ETL+  RG  H  +F H  
Sbjct: 3   LRAVFRRASIRGSSSASGLGKSLQSSRVAVS-AQFHSVSATETLV-PRG-NHAHSFHHRS 59

Query: 61  FPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLK 120
            PGC   C   R +I+  Q  T +  W  PFSS+ GD+V+AVVP MGESITDGTLA FLK
Sbjct: 60  CPGCPD-CS--RTIINGYQ-GTALQRWVRPFSSDSGDVVEAVVPHMGESITDGTLAAFLK 115

Query: 121 GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 180
            PGDRVE DE IAQIETDKVTID+ASP +GVI+E + KEG+TVEPG K+A IS S + V+
Sbjct: 116 KPGDRVEADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGNKVARISTSADAVS 175

Query: 181 HVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPPPPKRTAT---EPQLPP 237
           HVAPSEK    A  KP        +KP+ +   V+EKPKAPSPPPP  +     EPQLPP
Sbjct: 176 HVAPSEK----APEKPAPKPSPPAEKPKVESTKVAEKPKAPSPPPPPPSKQSAKEPQLPP 231

Query: 238 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKL 297
           K+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRS+YKDAFLEKHGVKL
Sbjct: 232 KDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVKL 291

Query: 298 GLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNF 357
           GLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDY+DISIAVGTSKGLVVPVIR+ADKMNF
Sbjct: 292 GLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRDADKMNF 351

Query: 358 ADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 417
           ADIEK IN LAKKA +G+ISIDEMAGGSFT+SNGGVYGSL+STPIINPPQSAILGMHSIV
Sbjct: 352 ADIEKTINGLAKKATEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIV 411

Query: 418 QRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           QRPMVVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRRIKDVVE+P+RLLLDI
Sbjct: 412 QRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLLLDI 464

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q90512|ODO2_TAKRU Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (Fragment) OS=Takifugu rubripes GN=dlst PE=3 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/376 (53%), Positives = 255/376 (67%), Gaps = 6/376 (1%)

Query: 97  DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156
           DLV    P   ES+T+G + ++ K  GD V  DE + +IETDK ++ V SP AGVI+EL+
Sbjct: 38  DLVTVKTPAFAESVTEGDV-RWEKAVGDSVTEDEVVCEIETDKTSVQVPSPAAGVIEELL 96

Query: 157 AKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSE 216
             +G  VE GT +  + K     A  APS       A  PP           P V  V  
Sbjct: 97  VPDGGKVEGGTPLFKLRKGA--AAEAAPSSVTEPVTAAPPPPPPPVSAPTAMPSVPPVPT 154

Query: 217 KPKAPSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMT 276
           +    + P P  T  EP       E RV M+R+R R+A RLK++QNT AMLTTFNEVDM+
Sbjct: 155 Q-ALQAKPVPAPTLPEPSTLGGRGESRVKMSRMRLRIAQRLKEAQNTCAMLTTFNEVDMS 213

Query: 277 NLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG--DDIIYRDYIDI 334
           N+ ++R+ +KDAFL+KH +KLG MS FVKAA   L +QP +NAVIDG  ++I+YRDY+DI
Sbjct: 214 NIQEMRTLHKDAFLKKHSIKLGFMSAFVKAAAHALTDQPAVNAVIDGATNEIVYRDYVDI 273

Query: 335 SIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVY 394
           S+AV T KGLVVPVIRN + MNFADIE+ IN L +KA +  +++++M GG+FTISNGGV+
Sbjct: 274 SVAVATPKGLVVPVIRNVETMNFADIERTINALGEKARNNELAVEDMDGGTFTISNGGVF 333

Query: 395 GSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLR 454
           GSL  TPIINPPQSAILGMH I QRP+ V G    RPMMY+ALTYDHRL+DGREAV FLR
Sbjct: 334 GSLFGTPIINPPQSAILGMHGIFQRPVAVDGKAEIRPMMYVALTYDHRLVDGREAVTFLR 393

Query: 455 RIKDVVEEPRRLLLDI 470
           +IK  VE+PR LLLD+
Sbjct: 394 KIKAAVEDPRALLLDM 409

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Takifugu rubripes (taxid: 31033)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q1RHI5|ODO2_RICBR Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/404 (48%), Positives = 268/404 (66%), Gaps = 38/404 (9%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           V  +VP +GES+T+ T+AK+ K  GD V+ DE + +IET+KVT++V SP  G I +++  
Sbjct: 3   VKIIVPSLGESVTEATIAKWYKKEGDAVKTDELLLEIETEKVTLEVNSPCNGTIGKIIKA 62

Query: 159 EGETVEPGTKI-------AVISKSGEGVAHVAPSEKIPEKAAPKP--------PSAEK-A 202
           +G  V  G +I       AV + S E       S+ +PEK   KP        PS +K  
Sbjct: 63  DGANVAVGEEIGDINEGEAVATNSNEAAKPQTASQPVPEKVPKKPAVANNTLAPSVQKLV 122

Query: 203 KEDKPQPK----------------VETVSEKPKAPSPPPPKRTATEPQLPPKERERRVPM 246
            E+K  P                 +ET++      +P P   + T      +ER  RV M
Sbjct: 123 TENKLDPNNIKGTGKDGRITKGDVLETMN------APTPAATSTTSSAKASEERVERVRM 176

Query: 247 TRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKA 306
           +RLRK +A RLKDSQNT A+LTTFNE+DM+ ++ LR +YKD F +KHGVKLG MS FV+A
Sbjct: 177 SRLRKTIAQRLKDSQNTAAILTTFNEIDMSKVIALRGKYKDEFEKKHGVKLGFMSFFVRA 236

Query: 307 AVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINT 366
            +  L+  P +NA IDGDD++Y++Y DI +AVGT +GLVVPV+R+ADKM FADIEK I  
Sbjct: 237 TIEALKLIPSVNAEIDGDDLVYKNYYDIGVAVGTEQGLVVPVVRDADKMGFADIEKTIGG 296

Query: 367 LAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGN 426
           LAKKA DG +S+ +++GG+F+ISNGGVYGSLLSTPIINPPQS ILG+H   +R + + G 
Sbjct: 297 LAKKARDGKLSMADLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEERVVAIDGK 356

Query: 427 VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           +  RPMMYIAL+YDHR+IDG+EAV FL +IK+++E P +LLL++
Sbjct: 357 IEIRPMMYIALSYDHRIIDGKEAVSFLVKIKELIESPEKLLLNL 400

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q6FYD4|ODO2_BARQU Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana (strain Toulouse) GN=sucB PE=3 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/404 (47%), Positives = 264/404 (65%), Gaps = 36/404 (8%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           VP +GES+T+ T+ K+ K  G+ V +DEP+ ++ETDKVT++V SP  G + E++AKEG+ 
Sbjct: 7   VPTLGESVTEATIGKWFKKLGEAVAVDEPLVELETDKVTVEVPSPVMGKLTEIIAKEGDI 66

Query: 163 VEPGTKIAVISKSGEGVAHV----------APSE--------KIPEKAAPKPPSAEK--- 201
           VE    +  +     G++            APSE          P    P  PSA K   
Sbjct: 67  VEVNAVLGFVESGAAGISQSFSPSATSIPEAPSELEQSPSSSATPSGTMPPAPSAAKLMA 126

Query: 202 ----AKED------KPQPKVETV----SEKPKAPSPPPPKRTATEPQLPPKE-RERRVPM 246
               AK D      + Q   E V    ++  KA +       ++    P +E RE RV M
Sbjct: 127 ENNIAKSDISGSGKRGQILKEDVLGALAQGTKASTSVATLTASSSSAAPIQEMREERVRM 186

Query: 247 TRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKA 306
           T+LR+ +A RLKD+QNT AMLTTFNEVDM+ +M LR  YKD F +KHGVKLG M  F KA
Sbjct: 187 TKLRQTIARRLKDAQNTAAMLTTFNEVDMSAVMDLRKRYKDLFEKKHGVKLGFMGFFTKA 246

Query: 307 AVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINT 366
               L+  P +NA IDG DI+Y++Y++  IAVGT KGLVVPV+R+AD+M+ A+IEKEI+ 
Sbjct: 247 VCHALKEFPTVNAEIDGTDIVYKNYVNAGIAVGTDKGLVVPVVRDADQMSLAEIEKEISR 306

Query: 367 LAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGN 426
           L + A DG +++ +M GG+FTI+NGGVYGSL+STPI+N PQS ILGMH+I +R MVVGG 
Sbjct: 307 LGRLARDGKLAVSDMQGGTFTITNGGVYGSLMSTPILNAPQSGILGMHAIKERAMVVGGQ 366

Query: 427 VVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           ++  PMMY+AL+YDHR++DG+EAV FL R+K+ +E+P RL+LD+
Sbjct: 367 IIICPMMYLALSYDHRIVDGQEAVTFLVRVKESLEDPERLVLDL 410

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Bartonella quintana (strain Toulouse) (taxid: 283165)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|P11179|ODO2_BOVIN Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Bos taurus GN=DLST PE=1 SV=2

 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/390 (50%), Positives = 259/390 (66%), Gaps = 20/390 (5%)

Query: 97  DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156
           D++    P   ES+T+G + ++ K  GD V  DE + +IETDK ++ V SP  GVI+ L+
Sbjct: 70  DVITVKTPAFAESVTEGDV-RWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALL 128

Query: 157 AKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSE 216
             +G  VE GT +  + K+G   A   P+      A    P+                ++
Sbjct: 129 VPDGGKVEGGTPLFTLRKTGAAPAKAKPAAAPAAAAPKAEPTVSAVPPPP---AAPIPTQ 185

Query: 217 KPKAPSPPPPKRT----ATEPQL-PPK---------ERERRVPMTRLRKRVATRLKDSQN 262
            P  PSP  P  +    A +P   PP+           E R  M R+R+R+A RLK++QN
Sbjct: 186 MPPVPSPSQPLTSKPVSAVKPTAAPPRAEAGAGVGLRSEHREKMNRMRQRIAQRLKEAQN 245

Query: 263 TFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID 322
           T AMLTTFNE+DM+N+ ++R+ +KDAFL+KH +KLG MS FVKA+   LQ QP++NAVID
Sbjct: 246 TCAMLTTFNEIDMSNIQEMRARHKDAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVID 305

Query: 323 G--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDE 380
               +++YRDYIDIS+AV T +GLVVPVIRN + MN+ADIE+ I+ L +KA    ++I++
Sbjct: 306 DATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYADIERTISELGEKARKNELAIED 365

Query: 381 MAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYD 440
           M GG+FTISNGGV+GSL  TPIINPPQSAILGMH+IV RP+V+GG V  RPMMY+ALTYD
Sbjct: 366 MDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIVDRPVVIGGKVEVRPMMYVALTYD 425

Query: 441 HRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           HRLIDGREAV FLR+IK  VE+PR LLLD+
Sbjct: 426 HRLIDGREAVTFLRKIKAAVEDPRVLLLDL 455

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q869Y7|ODO2_DICDI Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/387 (50%), Positives = 256/387 (66%), Gaps = 21/387 (5%)

Query: 91  FSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAG 150
           F S   D+V  V P MG+SI++GT+  + K  GD V +DE +  IETDKVTID+ +P +G
Sbjct: 67  FYSSANDVVIKV-PSMGDSISEGTIVAWTKNVGDSVRVDEVVCSIETDKVTIDINAPVSG 125

Query: 151 VIKELVAKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPK 210
            I EL AKEGE V  G  +  I+K GE    VA        AAPK  + + A+  K    
Sbjct: 126 TIVELFAKEGENVTVGNDLYKIAK-GE----VA--------AAPKVEAPKAAEAPKAAAP 172

Query: 211 VETVSEKPKAPSPPPPKRTATEPQLPPKERER-------RVPMTRLRKRVATRLKDSQNT 263
                      + P PK  A  P                RV MTR+R+R A RLKDSQNT
Sbjct: 173 TPAPKAAETPKAAPAPKSEAPTPAPKSTTTTTSTGPSETRVKMTRIRQRTAQRLKDSQNT 232

Query: 264 FAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG 323
            AMLTTFNE+DM+ LM +R  YKD F +KHGVK G MS FVKA+   L+ QPI+NA ++ 
Sbjct: 233 AAMLTTFNELDMSALMNMRKTYKDEFEKKHGVKFGFMSAFVKASTIALKEQPIVNASVEE 292

Query: 324 DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAG 383
           +DI+Y + ++I++AV   +GLVVPVIRN + ++FADIEKEI  L+  A + +++I++  G
Sbjct: 293 NDIVYHNNVNINVAVSAPRGLVVPVIRNCENLSFADIEKEIGRLSGLARNDALAIEDSIG 352

Query: 384 GSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRL 443
           G+FTISNGGV+GS+  TPIINPPQSAILGMH+I  RP VV G VV RP+MY+ALTYDHR+
Sbjct: 353 GTFTISNGGVFGSMFGTPIINPPQSAILGMHAIKDRPYVVNGQVVVRPIMYLALTYDHRI 412

Query: 444 IDGREAVFFLRRIKDVVEEPRRLLLDI 470
           IDGREAV FL++IKDV+E P R+LL++
Sbjct: 413 IDGREAVTFLKKIKDVLENPERILLEL 439

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q8GCY1|ODO2_BARVB Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1

 Score =  360 bits (924), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/405 (47%), Positives = 257/405 (63%), Gaps = 37/405 (9%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           VP +GES+T+ T+ K+ K  G+ V +DEP+ ++ETDKVT++V SP AG + E++AKEG+T
Sbjct: 7   VPTLGESVTEATVGKWFKKLGEAVAIDEPLVELETDKVTVEVPSPVAGKLFEIIAKEGDT 66

Query: 163 VEPGTKIAVISKSGEGVAH----------VAPSE---KIPEKAAPKPPSAEKAKEDKPQP 209
           VE    +  +      VA            APSE          P  PSA K   +    
Sbjct: 67  VEVNALLGAVEAGAASVAKSPSSSETSVSAAPSELEQSSSSNTMPPAPSAAKLMAENNIA 126

Query: 210 K------------------------VETVSEKPKAPSPPPPKRTATEPQLPPKERERRVP 245
           K                        V+T      A S  P   +++      + RE RV 
Sbjct: 127 KSDILGSGKRGQILKEDVLNVLAQGVKTSPPAVSASSSTPVSVSSSAVAPVQEMREERVR 186

Query: 246 MTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVK 305
           MT+LR+ +A RLKD+QNT AMLTTFNEVDM+ +M LR  YKD F +KHGVKLG M  F K
Sbjct: 187 MTKLRQTIARRLKDAQNTAAMLTTFNEVDMSAVMGLRKRYKDLFEKKHGVKLGFMGFFTK 246

Query: 306 AAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEIN 365
           A    L+  P +NA IDG DIIY++Y++  IAVGT KGLVVPV+R+AD+M+ A+IEKEI 
Sbjct: 247 AVCHALKELPAVNAEIDGTDIIYKNYVNAGIAVGTDKGLVVPVVRDADQMSLAEIEKEIG 306

Query: 366 TLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGG 425
            L + A DG +++ +M GG+FTI+NGGVYGSL+STPI+N PQS ILGMH+I +R MVV G
Sbjct: 307 RLGRLARDGKLAVSDMQGGTFTITNGGVYGSLMSTPILNAPQSGILGMHAIKERAMVVDG 366

Query: 426 NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
            +  RPMMY+AL+YDHR++DG+EAV FL R+K+ +E+P RL+LD+
Sbjct: 367 QIAIRPMMYLALSYDHRIVDGQEAVTFLVRVKESLEDPERLVLDL 411

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Bartonella vinsonii subsp. berkhofii (taxid: 40933)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q9D2G2|ODO2_MOUSE Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlst PE=1 SV=1

 Score =  358 bits (918), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 190/386 (49%), Positives = 252/386 (65%), Gaps = 13/386 (3%)

Query: 97  DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156
           D++    P   ES+T+G + ++ K  GD V  DE + +IETDK ++ V SP  G+I+ L+
Sbjct: 70  DVITVQTPAFAESVTEGDV-RWEKAVGDAVAEDEVVCEIETDKTSVQVPSPANGIIEALL 128

Query: 157 AKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSE 216
             +G  VE GT +  + K+G   A   P+E        +P +             +    
Sbjct: 129 VPDGGKVEGGTPLFTLRKTGAAPAKAKPAETPAPAHKAEPAAPAAPPPPAAPVLTQMPPV 188

Query: 217 KPKAPSPPPPKRTATEPQLPPK----------ERERRVPMTRLRKRVATRLKDSQNTFAM 266
              +  P     +A +P   P             E R  M R+R+R+A RLK++QNT AM
Sbjct: 189 PSPSQPPSSKPVSAIKPTAAPPLAEAGAAKGLRSEHREKMNRMRQRIAQRLKEAQNTCAM 248

Query: 267 LTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG--D 324
           LTTFNEVDM+N+ ++R+ +KDAFL+KH +KLG MS FVKA+   LQ QP++NAVID    
Sbjct: 249 LTTFNEVDMSNIQEMRARHKDAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDATK 308

Query: 325 DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGG 384
           +++YRDYIDIS+AV T +GLVVPVIRN + MN+ADIE+ IN L +KA    ++I++M GG
Sbjct: 309 EVVYRDYIDISVAVATPRGLVVPVIRNVETMNYADIERTINELGEKARKNELAIEDMDGG 368

Query: 385 SFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLI 444
           +FTISNGGV+GSL  TPIINPPQSAILGMH+I  RP+ VGG V  RPMMY+ALTYDHRLI
Sbjct: 369 TFTISNGGVFGSLFGTPIINPPQSAILGMHAIFDRPVAVGGKVEVRPMMYVALTYDHRLI 428

Query: 445 DGREAVFFLRRIKDVVEEPRRLLLDI 470
           DGREAV FLR+IK  VE+PR LLLD+
Sbjct: 429 DGREAVTFLRKIKAAVEDPRVLLLDL 454

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q4UKI7|ODO2_RICFE Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucB PE=3 SV=1

 Score =  358 bits (918), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 191/406 (47%), Positives = 268/406 (66%), Gaps = 41/406 (10%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           V  +VP +GES+T+ T+AK+ K  GD V+ DE + +IET+KVT++V +P  G I ++   
Sbjct: 3   VKIIVPSLGESVTEATIAKWYKKEGDPVKTDELLLEIETEKVTLEVNAPCDGTIGKISKT 62

Query: 159 EGETVEPGTKIAVISK---------SGEGVAHVAPSEKIPEKAAPKP--------PSAEK 201
           +G  V  G +I  I++         + E     A ++   EK   KP        PS +K
Sbjct: 63  DGANVAVGEEIGEINEGAAANTAGTNNESAKAQAVTQPTSEKPVEKPAVVNNILAPSVQK 122

Query: 202 -AKEDKPQPK----------------VETVSEKPKAPSPPPPKRTATEPQLPPKERERRV 244
              E+K  P                 +ET++    A S P   +T        +ER +RV
Sbjct: 123 LVTENKLDPNNIKGTGRDGRITKGDVLETINTPSAATSTPTVNKTN-------EERVQRV 175

Query: 245 PMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFV 304
            M+RLRK +A RLKDSQNT A+LTTFNE+DM+ ++ LR++YK+ F +KH VKLG MS FV
Sbjct: 176 RMSRLRKTIAQRLKDSQNTAAILTTFNEIDMSKVIALRNQYKEEFEKKHLVKLGFMSFFV 235

Query: 305 KAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEI 364
           KA +  L+  P +NA IDGDD++Y++Y DI +AVGT +GLVVPV+R+ADKM FA++EK I
Sbjct: 236 KATIEALKLIPSVNAEIDGDDLVYKNYYDIGVAVGTEQGLVVPVVRDADKMGFAEVEKAI 295

Query: 365 NTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVG 424
            TLAKKA +G +S+ +++GG+F+ISNGGVYGSLLSTPIINPPQS ILG+H   +R +V+ 
Sbjct: 296 GTLAKKAREGKLSMADLSGGTFSISNGGVYGSLLSTPIINPPQSGILGLHKTEERAVVID 355

Query: 425 GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           G +  RPMMYIAL+YDHR+IDG+E V FL +IK+++E P +LLL++
Sbjct: 356 GKIEIRPMMYIALSYDHRIIDGKEGVSFLVKIKELIENPEKLLLNL 401

The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
255578100	469	dihydrolipoamide succinyltransferase com	0.991	0.993	0.834	0.0
224116582	467	predicted protein [Populus trichocarpa]	0.980	0.987	0.804	0.0
359483352	473	PREDICTED: dihydrolipoyllysine-residue s	1.0	0.993	0.790	0.0
302144114	562	unnamed protein product [Vitis vinifera]	1.0	0.836	0.790	0.0
224061043	434	predicted protein [Populus trichocarpa]	0.912	0.988	0.747	0.0
449444056	469	PREDICTED: dihydrolipoyllysine-residue s	0.987	0.989	0.781	0.0
356501546	464	PREDICTED: dihydrolipoyllysine-residue s	0.985	0.997	0.738	0.0
356552986	461	PREDICTED: dihydrolipoyllysine-residue s	0.978	0.997	0.730	0.0
357494607	455	Dihydrolipoyllysine-residue succinyltran	0.968	1.0	0.712	0.0
357445475	453	Dihydrolipoyllysine-residue succinyltran	0.961	0.997	0.717	0.0

>gi|255578100|ref|XP_002529920.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis] gi|223530597|gb|EEF32474.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/472 (83%), Positives = 424/472 (89%), Gaps = 6/472 (1%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLI 60
           MLGV+RRRV +G S +S+L  SLQT +PA S  RVSS+  KE LL+ RGLG   NFS  I
Sbjct: 2   MLGVLRRRVTTGASSSSVLRRSLQTTKPAASAPRVSSLPEKEILLNLRGLGSAGNFSTFI 61

Query: 61  FPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLK 120
             GCS   + +RD  +S+  AT   +W  PFSS+ GDLVDAVVPFMGESITDGTLAKFLK
Sbjct: 62  SSGCSVSSRSIRD--ASSMMATKQ-VWIRPFSSDSGDLVDAVVPFMGESITDGTLAKFLK 118

Query: 121 GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 180
            PGDRVE+DEPIAQIETDKVTIDVASPEAGVIKE VAKEGETVEPGTK+A+ISKSGEGVA
Sbjct: 119 NPGDRVEVDEPIAQIETDKVTIDVASPEAGVIKEFVAKEGETVEPGTKVAIISKSGEGVA 178

Query: 181 HVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVET--VSEKPKAPSPPPPKRTATEPQLPPK 238
           HVAPSEK+PEK +PK  + EK  E+K +PKV+T  V+EKPK P+PPPPKR+ATEPQLPPK
Sbjct: 179 HVAPSEKVPEKVSPKASAPEKT-EEKQKPKVDTAPVTEKPKTPAPPPPKRSATEPQLPPK 237

Query: 239 ERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLG 298
           ERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAF+EKHGVKLG
Sbjct: 238 ERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFVEKHGVKLG 297

Query: 299 LMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFA 358
           LMSGF+KAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGT KGLVVPVIRNADKMNFA
Sbjct: 298 LMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADKMNFA 357

Query: 359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
           +IEKEINTLAKKANDG+ISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 
Sbjct: 358 EIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVS 417

Query: 419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVE+PRRLLLDI
Sbjct: 418 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDI 469

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116582|ref|XP_002317337.1| predicted protein [Populus trichocarpa] gi|222860402|gb|EEE97949.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/476 (80%), Positives = 418/476 (87%), Gaps = 15/476 (3%)

Query: 1   MLGVIRRRVASGGSPAS--ILGHSLQTMRP-AMSVSRVSSIAGKETLLHSRGLGHIRNFS 57
           MLGVIRRRVASGGS +S  IL  SLQT+RP + S SRVS    +E L+H RG GH+R FS
Sbjct: 1   MLGVIRRRVASGGSSSSSSILKQSLQTIRPVSSSTSRVS----EEILIHPRGFGHVRKFS 56

Query: 58  HLI-FPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLA 116
            L    G +   + +R+ +S+ +   +  + S PFSS+ GDLVDAVVPFMGESITDGTLA
Sbjct: 57  CLAPLRGRAISSRTMREGVSNMELTASKLILSRPFSSDSGDLVDAVVPFMGESITDGTLA 116

Query: 117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176
           KFLK PGDRVE+DEPIAQIETDKVTIDVASPEAGVIKEL+AKEG+TVEPGTKIAVISKSG
Sbjct: 117 KFLKNPGDRVEVDEPIAQIETDKVTIDVASPEAGVIKELIAKEGDTVEPGTKIAVISKSG 176

Query: 177 EGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVET--VSEKPKAPSPPPPKRTATEPQ 234
           EGVAH APSE   +++AP     E   E+K +PKVE   V  KPK P+PPPPKR+ATEPQ
Sbjct: 177 EGVAHAAPSENTSKQSAP-----EMKDEEKIKPKVEASPVPVKPKTPAPPPPKRSATEPQ 231

Query: 235 LPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHG 294
           LPPKE+ERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRSEYKDAF+EKHG
Sbjct: 232 LPPKEKERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSEYKDAFVEKHG 291

Query: 295 VKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADK 354
           VKLGLMSGF+KAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGT KGLVVPVIRNA+K
Sbjct: 292 VKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNAEK 351

Query: 355 MNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMH 414
           MNFA+IEKEINTLAKKANDG+ISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMH
Sbjct: 352 MNFAEIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMH 411

Query: 415 SIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           SIV RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVE+PRRLLLD+
Sbjct: 412 SIVSRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDV 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483352|ref|XP_002266593.2| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Vitis vinifera]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/473 (79%), Positives = 405/473 (85%), Gaps = 3/473 (0%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRP-AMSVSRVSSIAGKETLLHSRGLGHIRNFSHL 59
           M  ++RR+VASG S AS+LG SL  +RP A SV R  +   KE LL   G   IRN  H 
Sbjct: 1   MWAIVRRKVASGSSAASVLGQSLSKIRPAAASVPRGYTTTAKEALLLGGGSKIIRNVGHY 60

Query: 60  IFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFL 119
            + G     +P+R+V S  Q  + + +   PFSS+ GDLVDAVVPFMGESI+DGTLAKFL
Sbjct: 61  KYLGSLVSSKPVREVTSFLQIDSPIQVQHRPFSSDKGDLVDAVVPFMGESISDGTLAKFL 120

Query: 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGV 179
           K PGD VE+DEPIAQIETDKVTIDVASPEAGV+++ VAKEG+ VEPGTKIAVISKSGEGV
Sbjct: 121 KKPGDHVEVDEPIAQIETDKVTIDVASPEAGVVQKFVAKEGDVVEPGTKIAVISKSGEGV 180

Query: 180 AHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVET--VSEKPKAPSPPPPKRTATEPQLPP 237
            HVAPSEK P KA+P+P   EK   DKP+PK ET    EKPKAP+PPPP+ +ATEP LPP
Sbjct: 181 THVAPSEKTPSKASPEPSPTEKEAVDKPKPKSETPPPKEKPKAPAPPPPRPSATEPVLPP 240

Query: 238 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKL 297
           KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRS+YKDAFLEKHGVKL
Sbjct: 241 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKL 300

Query: 298 GLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNF 357
           GLMSGF+KAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGT KGLVVPVIRNAD MNF
Sbjct: 301 GLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADGMNF 360

Query: 358 ADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 417
           ADIEK INTLA+KANDG+ISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV
Sbjct: 361 ADIEKAINTLARKANDGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 420

Query: 418 QRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
            RPMVVGGNVV RPMMYIALTYDHRLIDGREAVFFLRRIKDVVE+PRRLLLDI
Sbjct: 421 NRPMVVGGNVVSRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDI 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144114|emb|CBI23219.3| unnamed protein product [Vitis vinifera]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/473 (79%), Positives = 405/473 (85%), Gaps = 3/473 (0%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRP-AMSVSRVSSIAGKETLLHSRGLGHIRNFSHL 59
           M  ++RR+VASG S AS+LG SL  +RP A SV R  +   KE LL   G   IRN  H 
Sbjct: 90  MWAIVRRKVASGSSAASVLGQSLSKIRPAAASVPRGYTTTAKEALLLGGGSKIIRNVGHY 149

Query: 60  IFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFL 119
            + G     +P+R+V S  Q  + + +   PFSS+ GDLVDAVVPFMGESI+DGTLAKFL
Sbjct: 150 KYLGSLVSSKPVREVTSFLQIDSPIQVQHRPFSSDKGDLVDAVVPFMGESISDGTLAKFL 209

Query: 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGV 179
           K PGD VE+DEPIAQIETDKVTIDVASPEAGV+++ VAKEG+ VEPGTKIAVISKSGEGV
Sbjct: 210 KKPGDHVEVDEPIAQIETDKVTIDVASPEAGVVQKFVAKEGDVVEPGTKIAVISKSGEGV 269

Query: 180 AHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVET--VSEKPKAPSPPPPKRTATEPQLPP 237
            HVAPSEK P KA+P+P   EK   DKP+PK ET    EKPKAP+PPPP+ +ATEP LPP
Sbjct: 270 THVAPSEKTPSKASPEPSPTEKEAVDKPKPKSETPPPKEKPKAPAPPPPRPSATEPVLPP 329

Query: 238 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKL 297
           KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRS+YKDAFLEKHGVKL
Sbjct: 330 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKL 389

Query: 298 GLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNF 357
           GLMSGF+KAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGT KGLVVPVIRNAD MNF
Sbjct: 390 GLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADGMNF 449

Query: 358 ADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 417
           ADIEK INTLA+KANDG+ISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV
Sbjct: 450 ADIEKAINTLARKANDGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 509

Query: 418 QRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
            RPMVVGGNVV RPMMYIALTYDHRLIDGREAVFFLRRIKDVVE+PRRLLLDI
Sbjct: 510 NRPMVVGGNVVSRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDI 562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061043|ref|XP_002300330.1| predicted protein [Populus trichocarpa] gi|222847588|gb|EEE85135.1| predicted protein [Populus trichocarpa]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/475 (74%), Positives = 388/475 (81%), Gaps = 46/475 (9%)

Query: 1   MLGVIRRRVASGG---SPASILGHSLQTMRPA-MSVSRVSSIAGKETLLHSRGLGHIRNF 56
           M GVIRRRVA+GG   S ++IL  SLQT+RPA  S SRVS     E L H+RG  H+R F
Sbjct: 1   MFGVIRRRVANGGLSSSSSAILRQSLQTIRPAPSSTSRVSD----EILTHARGFEHVRKF 56

Query: 57  SHLIFP-GCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTL 115
           S  + P G +   +P+R+V+S+ + A++   WS PFSS+ GDLVDAVVPFMGESITDGTL
Sbjct: 57  SCFVSPRGRAISSRPVREVVSNMELASSKKTWSRPFSSDTGDLVDAVVPFMGESITDGTL 116

Query: 116 AKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175
           AKFLK PGD VE+DE IAQIETDKVTIDVASPEAGVIKE +AKEG+TVEPG KIAVISKS
Sbjct: 117 AKFLKNPGDSVEVDEAIAQIETDKVTIDVASPEAGVIKEYIAKEGDTVEPGAKIAVISKS 176

Query: 176 GEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPPPPKRTATEPQL 235
           GEGVAHVAPSE I +KAAPK  +++   E+K                             
Sbjct: 177 GEGVAHVAPSENISQKAAPKQSASQTKDEEK----------------------------- 207

Query: 236 PPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGV 295
                   VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRS+YKDAF+EKHGV
Sbjct: 208 --------VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGV 259

Query: 296 KLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKM 355
           KLGLMSGF+KAAVSGLQNQPIINAVIDGDDIIYRDY+DISIAVGT KGLVVPVIRNA KM
Sbjct: 260 KLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYVDISIAVGTPKGLVVPVIRNAGKM 319

Query: 356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHS 415
           NFA+IEKEINTLAKKANDG+ISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHS
Sbjct: 320 NFAEIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHS 379

Query: 416 IVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           IV RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVE+PRRLLLD+
Sbjct: 380 IVSRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDV 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444056|ref|XP_004139791.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Cucumis sativus] gi|449517675|ref|XP_004165870.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Cucumis sativus]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/472 (78%), Positives = 404/472 (85%), Gaps = 8/472 (1%)

Query: 2   LGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIF 61
            GV+RRR+ASGGS        L+ +RP++S  RV S+A KE L   R  GH+RN SHL  
Sbjct: 3   FGVVRRRIASGGSNL-FSAQYLRGIRPSISAGRVRSVAEKEILHQCRSFGHVRNISHLFS 61

Query: 62  PGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKG 121
           PG     Q LR   SS Q+   + +    FSS+ GDL+D VVP + ESITDGTLAKFLK 
Sbjct: 62  PGGLASSQSLRVAFSSMQQRPMIQMNGRNFSSDNGDLLDVVVPPLAESITDGTLAKFLKN 121

Query: 122 PGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVAH 181
           PGDRVELDE IAQIETDKVTIDV SP AG+I++ VAKEG+TVEPGTK+A+ISK+GEGV H
Sbjct: 122 PGDRVELDEAIAQIETDKVTIDVTSPGAGIIQKFVAKEGDTVEPGTKVAIISKTGEGVTH 181

Query: 182 VAPSEKIPEKAAPKPPSAEKAKEDKPQPKVE-TVSE--KPKAPSPPPPKRTATEPQLPPK 238
           VAPSEK  E+AAP+   AEK +    +PK E TVSE  KPKAPSPPPPKR+ATEPQLPPK
Sbjct: 182 VAPSEKTSEQAAPQAAPAEKIE----KPKAETTVSEKPKPKAPSPPPPKRSATEPQLPPK 237

Query: 239 ERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLG 298
           +RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRS+YKDAF+EKHGVKLG
Sbjct: 238 DRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLG 297

Query: 299 LMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFA 358
           LMSGF+KAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGT KGLVVPVIRNADKMNFA
Sbjct: 298 LMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADKMNFA 357

Query: 359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
           +IEKEINTLAKKANDG+ISIDEMAGGSFT+SNGGVYGSLLSTPIINPPQSAILGMHSIV 
Sbjct: 358 EIEKEINTLAKKANDGTISIDEMAGGSFTVSNGGVYGSLLSTPIINPPQSAILGMHSIVS 417

Query: 419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           R +VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVE+PRRLLLDI
Sbjct: 418 RAVVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEDPRRLLLDI 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501546|ref|XP_003519585.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Glycine max]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/471 (73%), Positives = 387/471 (82%), Gaps = 8/471 (1%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRPAMSVS-RVSSIAGKETLLHSRGLGHIRNFSHL 59
           M GV+RRRVASG     +LG S Q +R   SVS R SSI  KE +  S G G ++NFSH 
Sbjct: 1   MFGVVRRRVASGSPSPWLLGQSAQKIRSGPSVSARASSIVEKEIVFRSGGCGFVQNFSH- 59

Query: 60  IFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFL 119
           I PG     +P+R VI        +  W   FSSE GD VD VVP + ESI+DGTLA+FL
Sbjct: 60  ITPGSWINSKPMRVVI---HPEATVRTWGRLFSSESGDTVDVVVPPLAESISDGTLAQFL 116

Query: 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGV 179
           K PGDRV  DEPIAQIETDKVTIDV+SPE+GVI +L+A EG+TVEPG KIA+IS+S +  
Sbjct: 117 KRPGDRVNADEPIAQIETDKVTIDVSSPESGVILKLLANEGDTVEPGNKIAIISRSADA- 175

Query: 180 AHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPPPPKRTATEPQLPPKE 239
            HVAPSE I EKAAP+P   +K  E+K  PKVET   K K  +PP   ++ TEPQLPPKE
Sbjct: 176 THVAPSETISEKAAPQP--TQKVSEEKKAPKVETAPAKEKPKTPPATLKSPTEPQLPPKE 233

Query: 240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299
           RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRS+YKDAF+EKHGVKLGL
Sbjct: 234 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGL 293

Query: 300 MSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFAD 359
           MSGFVKAAV+ LQ+QPI+NAVIDGDDIIYRDYIDISIAVGT KGLVVPVIRNAD MNFAD
Sbjct: 294 MSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADTMNFAD 353

Query: 360 IEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQR 419
           IEK+INT AKKANDGS+SIDEMAGG+ TISNGGVYGSLLSTPIINPPQSAILGMHSIV R
Sbjct: 354 IEKQINTFAKKANDGSLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSR 413

Query: 420 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           P VVGGN+VPRPMMY+ALTYDHR+IDGREAVFFLRRIKD+VE+PRRLLLDI
Sbjct: 414 PTVVGGNIVPRPMMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 464

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552986|ref|XP_003544840.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Glycine max]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/471 (73%), Positives = 385/471 (81%), Gaps = 11/471 (2%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRPAMSVS-RVSSIAGKETLLHSRGLGHIRNFSHL 59
           M GV+RRRVASG     +LG S+Q +R   SVS R SSIA       S G G +RNFSH+
Sbjct: 1   MFGVVRRRVASGSPSPWLLGQSVQNIRSGPSVSARASSIA---IAFPSGGCGFVRNFSHI 57

Query: 60  IFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFL 119
              G     +P+R VI    +AT   L    FSSE GD VD VVP + ESI+DGTLA+FL
Sbjct: 58  TL-GSWINSKPMRVVIHP--EATVQTL-GRLFSSESGDTVDVVVPPLAESISDGTLAQFL 113

Query: 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGV 179
           K PGDRV  DEPIAQIETDKVTIDV+SPE+GVI +L+A EG+TVEPG KIA+IS+S +  
Sbjct: 114 KRPGDRVNADEPIAQIETDKVTIDVSSPESGVILKLLANEGDTVEPGNKIAIISRSADA- 172

Query: 180 AHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPPPPKRTATEPQLPPKE 239
            HVAPSE   EK AP+P   +K  E+K  PKVET   K K  +PP   ++ TEPQLPPKE
Sbjct: 173 THVAPSETTSEKGAPQP--TQKVSEEKKAPKVETAPAKEKPKAPPAILKSPTEPQLPPKE 230

Query: 240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299
           RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRS+YKDAF+EKHGVKLGL
Sbjct: 231 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSDYKDAFVEKHGVKLGL 290

Query: 300 MSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFAD 359
           MSGFVKAAV+ LQ+QPI+NAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNAD MNFAD
Sbjct: 291 MSGFVKAAVNALQHQPIVNAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADTMNFAD 350

Query: 360 IEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQR 419
           IEK+IN  AKKANDG++SIDEMAGG+ TISNGGVYGSLLSTPIINPPQSAILGMHSIV R
Sbjct: 351 IEKQINAFAKKANDGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSR 410

Query: 420 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           P VVGGN+VPRP+MY+ALTYDHR+IDGREAVFFLRRIKD+VE+PRRLLLDI
Sbjct: 411 PTVVGGNIVPRPLMYVALTYDHRIIDGREAVFFLRRIKDIVEDPRRLLLDI 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494607|ref|XP_003617592.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula] gi|355518927|gb|AET00551.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/470 (71%), Positives = 378/470 (80%), Gaps = 15/470 (3%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLI 60
           M GV+RRRVA G +       SL  +R     +RVSS+  KE  L S G G+IRNF H I
Sbjct: 1   MFGVVRRRVAYGST------SSLLKIRSG--TTRVSSVLEKEVALSSGGCGNIRNFCH-I 51

Query: 61  FPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLK 120
            PG     +P+RD+     +  ++  W   FSS+ GD VD VVP + ESI DGTLAKFLK
Sbjct: 52  TPGRWINSKPIRDIF---HQEASIQTWKRSFSSDNGDNVDVVVPPLAESIEDGTLAKFLK 108

Query: 121 GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 180
            PGD+V +DEPIAQIETDKVTIDV SPE+GVI +L+A EG+TV PG KIA+IS+S +   
Sbjct: 109 RPGDKVNVDEPIAQIETDKVTIDVPSPESGVILKLLANEGDTVAPGNKIAIISRSADATT 168

Query: 181 HVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPPPPKRTATEPQLPPKER 240
           HVAPSE  P+K APK        E+K  PKVET +EKPK P+P   + + TEPQLPPKER
Sbjct: 169 HVAPSETSPQKPAPKQTPKASEPEEKKAPKVETTTEKPKTPAP---QSSPTEPQLPPKER 225

Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
           ERRVPMTRLRKRVA RLKDSQNTFAMLTTFNEVDMTNLMKLR++YKDAF+EKHGVKLGLM
Sbjct: 226 ERRVPMTRLRKRVAQRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGLM 285

Query: 301 SGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADI 360
           SGF+KAAV+ LQ QPI+NAVIDGDDIIYRDYIDISIAVGT KGLVVPVIR+ADKMNFADI
Sbjct: 286 SGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRDADKMNFADI 345

Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
           EK+IN  AKKAN G++SIDEMAGG+ TISNGGVYGSLLSTPIINPPQSAILGMHSIV RP
Sbjct: 346 EKQINIFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSRP 405

Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
            VVGGNVVPRP+MYIALTYDHR+IDGREAVFFLRRIKD VE+PRRLLLDI
Sbjct: 406 AVVGGNVVPRPLMYIALTYDHRIIDGREAVFFLRRIKDTVEDPRRLLLDI 455

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445475|ref|XP_003593015.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula] gi|355482063|gb|AES63266.1| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [Medicago truncatula] gi|388493976|gb|AFK35054.1| unknown [Medicago truncatula]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/471 (71%), Positives = 378/471 (80%), Gaps = 19/471 (4%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLI 60
           M GV+RRRVAS          SL  +R     +RVS +  KE  L S G G+IRNF H I
Sbjct: 1   MFGVVRRRVASS---------SLLKIRSG--TTRVSPVLEKEIALSSGGCGNIRNFCH-I 48

Query: 61  FPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLK 120
            PG     +P+RD+     +  ++  W   FSS+ GD VD VVP + ESI DGTLAKFLK
Sbjct: 49  TPGRWISSKPIRDIF---HQEASVQTWKRSFSSDNGDNVDVVVPPLAESIEDGTLAKFLK 105

Query: 121 GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 180
            PGDRV +DEPIAQIETDKVTIDV SPE+GVI +L+A EG+TV PG KIA+IS+S +   
Sbjct: 106 RPGDRVNVDEPIAQIETDKVTIDVPSPESGVILKLLANEGDTVAPGNKIAIISRSADATT 165

Query: 181 HVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVS-EKPKAPSPPPPKRTATEPQLPPKE 239
           HVAPSE  PEK APKP       E+K  PKVET + EKPKAP+P   + + TEPQLPPKE
Sbjct: 166 HVAPSETAPEKPAPKPTPKASEPEEKKTPKVETTTTEKPKAPTP---QSSPTEPQLPPKE 222

Query: 240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299
           RERRVPMTRLRKRVA RLKDSQNTFAMLTTFNEVDMTNLMKLR++YKDAF+EKHGVKLGL
Sbjct: 223 RERRVPMTRLRKRVAQRLKDSQNTFAMLTTFNEVDMTNLMKLRADYKDAFVEKHGVKLGL 282

Query: 300 MSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFAD 359
           MSGF+KAAV+ LQ QPI+NAVIDGDDIIYRDYIDISIAVGT KGLVVPVIR+ADKMNFAD
Sbjct: 283 MSGFIKAAVNALQYQPIVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRDADKMNFAD 342

Query: 360 IEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQR 419
           IEK+IN  AKKAN G++SIDEMAGG+ TISNGGVYGSLLSTPIINPPQSAILGMHSIV R
Sbjct: 343 IEKQINVFAKKANAGTLSIDEMAGGTLTISNGGVYGSLLSTPIINPPQSAILGMHSIVSR 402

Query: 420 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           P VVGGNVVPRP+MYIALTYDHR+IDGREAVFFLRRIKD VE+PRRLLLDI
Sbjct: 403 PAVVGGNVVPRPLMYIALTYDHRIIDGREAVFFLRRIKDTVEDPRRLLLDI 453

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
TAIR|locus:2161670	464	AT5G55070 [Arabidopsis thalian	0.504	0.510	0.852	2.5e-149
TAIR|locus:2116432	464	AT4G26910 [Arabidopsis thalian	0.974	0.987	0.633	5.1e-145
TIGR_CMR|SPO_0343	398	SPO_0343 "2-oxoglutarate dehyd	0.491	0.580	0.584	3.9e-87
ZFIN|ZDB-GENE-030326-1	458	dlst "dihydrolipoamide S-succi	0.489	0.502	0.625	5e-87
UNIPROTKB|P11179	455	DLST "Dihydrolipoyllysine-resi	0.489	0.505	0.612	1.3e-86
MGI|MGI:1926170	454	Dlst "dihydrolipoamide S-succi	0.489	0.506	0.616	2.7e-86
RGD|1359615	454	Dlst "dihydrolipoamide S-succi	0.489	0.506	0.616	3.5e-86
UNIPROTKB|G3V6P2	454	Dlst "Dihydrolipoyllysine-resi	0.489	0.506	0.616	3.5e-86
UNIPROTKB|E2R0H0	455	DLST "Uncharacterized protein"	0.489	0.505	0.612	7.2e-86
UNIPROTKB|P36957	453	DLST "Dihydrolipoyllysine-resi	0.489	0.507	0.603	9.2e-86

TAIR|locus:2161670 AT5G55070 [Arabidopsis thaliana (taxid:3702)]

 Score = 1029 (367.3 bits), Expect = 2.5e-149, Sum P(2) = 2.5e-149
 Identities = 202/237 (85%), Positives = 219/237 (92%)

Query:   234 QLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKH 293
             QLPPK+RERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRS+YKDAFLEKH
Sbjct:   228 QLPPKDRERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKH 287

Query:   294 GVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNAD 353
             GVKLGLMSGF+KAAVS LQ+QP++NAV              SIAVGTSKGLVVPVIR+AD
Sbjct:   288 GVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRDAD 347

Query:   354 KMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGM 413
             KMNFADIEK IN LAKKA +G+ISIDEMAGGSFT+SNGGVYGSL+STPIINPPQSAILGM
Sbjct:   348 KMNFADIEKTINGLAKKATEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGM 407

Query:   414 HSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             HSIVQRPMVVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRRIKDVVE+P+RLLLDI
Sbjct:   408 HSIVQRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLLLDI 464

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA;ISS

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2116432 AT4G26910 [Arabidopsis thaliana (taxid:3702)]

 Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
 Identities = 301/475 (63%), Positives = 347/475 (73%)

Query:     1 MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKET--LLHSRGLGHIRNFSH 58
             M+  + RR AS GS  S+   SLQ+ R A   S  S ++G ET   LH RG  H  +F +
Sbjct:     2 MMRAVIRRAASNGSSPSLFAKSLQSSRVA--ASSPSLLSGSETGAYLH-RG-NHAHSFHN 57

Query:    59 LIFPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKF 118
             L  P  + G      ++SST     +  W  PFS+E GD V+AVVP MGESITDGTLA F
Sbjct:    58 LALPAGNSGISRSASLVSST-----LQRWVRPFSAETGDTVEAVVPHMGESITDGTLATF 112

Query:   119 LKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 178
             LK PG+RV+ DE IAQIETDKVTID+ASP +GVI+E +  EG+TVEPGTK+A+ISKS + 
Sbjct:   113 LKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVNEGDTVEPGTKVAIISKSEDT 172

Query:   179 VAHVXXXXXXXXXXXXXXXXXXXXXXDKPQPKVETVXXXXXXXXXXXX---XXXXXXXQL 235
              + V                      DK +P+VE+                       QL
Sbjct:   173 ASQVTPSQKIPETTDTKPSPPAE---DKQKPRVESAPVAEKPKAPSSPPPPKQSAKEPQL 229

Query:   236 PPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGV 295
             PPKERERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRS+YKDAF EKHGV
Sbjct:   230 PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGV 289

Query:   296 KLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNADKM 355
             KLGLMSGF+KAAVS LQ+QP++NAV              SIAVGTSKGLVVPVIR ADKM
Sbjct:   290 KLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKM 349

Query:   356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHS 415
             NFA+IEK IN+LAKKAN+G+ISIDEMAGGSFT+SNGGVYGSL+STPIINPPQSAILGMHS
Sbjct:   350 NFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHS 409

Query:   416 IVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             IV RPMVVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRR+KDVVE+P+RLLLDI
Sbjct:   410 IVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 464

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA;ISS

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TIGR_CMR|SPO_0343 SPO_0343 "2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 701 (251.8 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 135/231 (58%), Positives = 173/231 (74%)

Query:   240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299
             RE RV MTRLR+ +A RLKD+QNT A+LTT+NEVDMT +M LR+ YKDAF +KHGV++G 
Sbjct:   168 REERVRMTRLRQTIARRLKDAQNTAAILTTYNEVDMTEVMALRNTYKDAFEKKHGVRMGF 227

Query:   300 MSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNADKMNFAD 359
             MS F KA    L+  P +NA                +A GT +GLVVPVIR+AD+M+FA+
Sbjct:   228 MSFFTKACCHALKEVPEVNAEIDGQDIVYKNYVHMGVAAGTPQGLVVPVIRDADQMSFAE 287

Query:   360 IEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQR 419
             IEK I    K+A DG +S+ EM GG+FTISNGGVYGSL+S+PI+NPPQS ILGMH I  R
Sbjct:   288 IEKAIAEKGKRARDGKLSMAEMQGGTFTISNGGVYGSLMSSPILNPPQSGILGMHKIQDR 347

Query:   420 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             PMV+ G +  RPMMY+AL+YDHR++DG+ AV FL R+K+ +E+PRRLL+D+
Sbjct:   348 PMVINGEIKIRPMMYLALSYDHRIVDGKGAVTFLVRVKEALEDPRRLLMDL 398

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=ISS

ZFIN|ZDB-GENE-030326-1 dlst "dihydrolipoamide S-succinyltransferase" [Danio rerio (taxid:7955)]

 Score = 738 (264.8 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
 Identities = 145/232 (62%), Positives = 175/232 (75%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
             E RV M R+R R+A RLK++QNT AMLTTFNEVDM+N+ ++R+ YKDAFL+KHG+KLG M
Sbjct:   227 EHRVKMNRMRLRIAQRLKEAQNTCAMLTTFNEVDMSNITEMRTHYKDAFLKKHGIKLGFM 286

Query:   301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXX--SIAVGTSKGLVVPVIRNADKMNFA 358
             S FVKAA   L +QP +NAV                S+AV T KGLVVPVIR  + MNFA
Sbjct:   287 SAFVKAAAYALTDQPAVNAVIDDTTKEIVYRDYVDISVAVATPKGLVVPVIRGVEGMNFA 346

Query:   359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
             DIEK IN L +KA    +++++M GG+FTISNGGV+GS+  TPIINPPQSAILGMH I  
Sbjct:   347 DIEKTINELGEKARKNELAVEDMDGGTFTISNGGVFGSMFGTPIINPPQSAILGMHGIFD 406

Query:   419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             RP+ + G V  RPMMY+ALTYDHRLIDGREAV FLR+IK VVE+PR LLLD+
Sbjct:   407 RPVAIAGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKSVVEDPRVLLLDM 458

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|P11179 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 735 (263.8 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
 Identities = 142/232 (61%), Positives = 179/232 (77%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT AMLTTFNE+DM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   224 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKDAFLKKHNLKLGFM 283

Query:   301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXX--SIAVGTSKGLVVPVIRNADKMNFA 358
             S FVKA+   LQ QP++NAV                S+AV T +GLVVPVIRN + MN+A
Sbjct:   284 SAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYA 343

Query:   359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
             DIE+ I+ L +KA    ++I++M GG+FTISNGGV+GSL  TPIINPPQSAILGMH+IV 
Sbjct:   344 DIERTISELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIVD 403

Query:   419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             RP+V+GG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VE+PR LLLD+
Sbjct:   404 RPVVIGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 455

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

MGI|MGI:1926170 Dlst "dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)" [Mus musculus (taxid:10090)]

 Score = 733 (263.1 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
 Identities = 143/232 (61%), Positives = 177/232 (76%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT AMLTTFNEVDM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   223 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHKDAFLKKHNLKLGFM 282

Query:   301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXX--SIAVGTSKGLVVPVIRNADKMNFA 358
             S FVKA+   LQ QP++NAV                S+AV T +GLVVPVIRN + MN+A
Sbjct:   283 SAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYA 342

Query:   359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
             DIE+ IN L +KA    ++I++M GG+FTISNGGV+GSL  TPIINPPQSAILGMH+I  
Sbjct:   343 DIERTINELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHAIFD 402

Query:   419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             RP+ VGG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VE+PR LLLD+
Sbjct:   403 RPVAVGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 454

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006103 "2-oxoglutarate metabolic process" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

RGD|1359615 Dlst "dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)" [Rattus norvegicus (taxid:10116)]

 Score = 732 (262.7 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
 Identities = 143/232 (61%), Positives = 176/232 (75%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT AMLTTFNEVDM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   223 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHKDAFLKKHNLKLGFM 282

Query:   301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXX--SIAVGTSKGLVVPVIRNADKMNFA 358
             S FVKA+   LQ QP++NAV                S+AV T +GLVVPVIRN + MN+A
Sbjct:   283 SAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYA 342

Query:   359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
             DIE+ IN L +KA    ++I++M GG+FTISNGGV+GSL  TPIINPPQSAILGMH I  
Sbjct:   343 DIERTINELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFD 402

Query:   419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             RP+ VGG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VE+PR LLLD+
Sbjct:   403 RPVAVGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 454

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IC

GO:0006103 "2-oxoglutarate metabolic process" evidence=IDA

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO;IDA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

UNIPROTKB|G3V6P2 Dlst "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 732 (262.7 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
 Identities = 143/232 (61%), Positives = 176/232 (75%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT AMLTTFNEVDM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   223 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEVDMSNIQEMRARHKDAFLKKHNLKLGFM 282

Query:   301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXX--SIAVGTSKGLVVPVIRNADKMNFA 358
             S FVKA+   LQ QP++NAV                S+AV T +GLVVPVIRN + MN+A
Sbjct:   283 SAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVETMNYA 342

Query:   359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
             DIE+ IN L +KA    ++I++M GG+FTISNGGV+GSL  TPIINPPQSAILGMH I  
Sbjct:   343 DIERTINELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFD 402

Query:   419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             RP+ VGG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VE+PR LLLD+
Sbjct:   403 RPVAVGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 454

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

UNIPROTKB|E2R0H0 DLST "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 728 (261.3 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
 Identities = 142/232 (61%), Positives = 176/232 (75%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT AMLTTFNE+DM+N+ ++R+ +KDAFL+KH +KLG M
Sbjct:   224 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKDAFLKKHNLKLGFM 283

Query:   301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXX--SIAVGTSKGLVVPVIRNADKMNFA 358
             S FVKA+   LQ QP++NAV                S+AV T +GLVVPVIRN + MN+A
Sbjct:   284 SAFVKASAFALQEQPVVNAVIDDATKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNYA 343

Query:   359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
             DIE+ I+ L +KA    ++I++M GG+FTISNGGV+GSL  TPIINPPQSAILGMH I  
Sbjct:   344 DIERTISELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFD 403

Query:   419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             RP+ VGG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VE+PR LLLDI
Sbjct:   404 RPVAVGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDI 455

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

UNIPROTKB|P36957 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 723 (259.6 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
 Identities = 140/232 (60%), Positives = 175/232 (75%)

Query:   241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
             E R  M R+R+R+A RLK++QNT AMLTTFNE+DM+N+ ++R+ +K+AFL+KH +KLG M
Sbjct:   222 EHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFM 281

Query:   301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXX--SIAVGTSKGLVVPVIRNADKMNFA 358
             S FVKA+   LQ QP++NAV                S+AV T +GLVVPVIRN + MNFA
Sbjct:   282 SAFVKASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFA 341

Query:   359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
             DIE+ I  L +KA    ++I++M GG+FTISNGGV+GSL  TPIINPPQSAILGMH I  
Sbjct:   342 DIERTITELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFD 401

Query:   419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
             RP+ +GG V  RPMMY+ALTYDHRLIDGREAV FLR+IK  VE+PR LLLD+
Sbjct:   402 RPVAIGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 453

GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA

GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA

GO:0033512 "L-lysine catabolic process to acetyl-CoA via saccharopine" evidence=IEA

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006099 "tricarboxylic acid cycle" evidence=TAS

GO:0006554 "lysine catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19262	ODO2_YEAST	2, ., 3, ., 1, ., 6, 1	0.4273	0.9148	0.9287	yes	no
Q9FLQ4	ODO2A_ARATH	2, ., 3, ., 1, ., 6, 1	0.7188	0.9765	0.9892	no	no
Q8H107	ODO2B_ARATH	2, ., 3, ., 1, ., 6, 1	0.6989	0.9744	0.9870	yes	no
Q869Y7	ODO2_DICDI	2, ., 3, ., 1, ., 6, 1	0.5090	0.7787	0.8337	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1.61	0.979
3rd Layer	2.3.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XI2803	hypothetical protein (467 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VIII0421	hypothetical protein (1021 aa)	•		•	•	•	•	•		0.993
	estExt_Genewise1_v1.C_LG_X2288	hypothetical protein (1021 aa)	•		•	•	•	•	•		0.992
	LPD1	precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)	•		•	•	•	•	•		0.979
	estExt_Genewise1_v1.C_LG_XIV0188	succinate-CoA ligase, beta subunit (EC-6.2.1.5 6.2.1.4) (422 aa)	•			•		•	•		0.953
	eugene3.00002649	succinate-CoA ligase, beta subunit (EC-6.2.1.5 6.2.1.4) (421 aa)	•			•		•	•		0.953
	LPD3	precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)	•		•			•	•		0.939
	LPD4	precursor of dehydrogenase dihydrolipoamide dehydrogenase 4 (EC-1.8.1.4) (529 aa)	•		•			•	•		0.938
	estExt_fgenesh4_pm.C_LG_V0127	succinate-CoA ligase (GDP-forming) (EC-6.2.1.5) (298 aa)	•			•		•	•		0.922
	gw1.XII.1248.1	succinate-CoA ligase (GDP-forming) (EC-6.2.1.5) (293 aa)	•			•		•	•		0.921
	estExt_fgenesh4_pg.C_1220019	succinate-CoA ligase (GDP-forming) (330 aa)	•			•		•	•		0.918

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	470
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	0.0
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	0.0
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.0
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	1e-177
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-131
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	1e-119
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-98
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	2e-92
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	2e-74
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	8e-67
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	2e-59
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	2e-57
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	8e-56
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	8e-49
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	2e-44
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	5e-33
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	6e-26
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-21
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	9e-21
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	2e-17
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-17
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	7e-16
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	1e-15
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	8e-15
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	1e-14
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	3e-10
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	5e-10
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	7e-10
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	3e-09
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	7e-08
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	2e-05
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	1e-04
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	1e-04
pfam02063	296	pfam02063, MARCKS, MARCKS family	2e-04
COG1038	1149	COG1038, PycA, Pyruvate carboxylase [Energy produc	4e-04
TIGR01235	1143	TIGR01235, pyruv_carbox, pyruvate carboxylase	0.002
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	0.003
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	0.004

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score =  659 bits (1702), Expect = 0.0
 Identities = 345/474 (72%), Positives = 393/474 (82%), Gaps = 16/474 (3%)

Query: 1   MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLI 60
           ML  + RR ++ GS  S+ G SLQ+ R A S   + S +    LLH RG  H  +F +L 
Sbjct: 2   MLRAVIRRASTRGSSPSLFGKSLQSSRVAASSPSLLSGSETGALLH-RG-NHAHSFHNLA 59

Query: 61  FPGCSKGCQPLRDVISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLK 120
            PG S G      ++SST     +  W  PFSSE GD V+AVVP MGESITDGTLA FLK
Sbjct: 60  LPGNS-GISRSASLVSST-----LQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLK 113

Query: 121 GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 180
            PG+RV+ DE IAQIETDKVTID+ASP +GVI+E + KEG+TVEPGTK+A+ISKS +  +
Sbjct: 114 KPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSEDAAS 173

Query: 181 HVAPSEKIPEKAAPKP-PSAEKAKEDKPQPKVET--VSEKPKAPS-PPPPKRTATEPQLP 236
            V PS+KIPE   PKP P AE    DK +PKVE+  V+EKPKAPS PPPPK++A EPQLP
Sbjct: 174 QVTPSQKIPETTDPKPSPPAE----DKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLP 229

Query: 237 PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVK 296
           PKERERRVPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMTNLMKLRS+YKDAF EKHGVK
Sbjct: 230 PKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVK 289

Query: 297 LGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMN 356
           LGLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDY+DISIAVGTSKGLVVPVIR ADKMN
Sbjct: 290 LGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMN 349

Query: 357 FADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSI 416
           FA+IEK IN LAKKAN+G+ISIDEMAGGSFT+SNGGVYGSL+STPIINPPQSAILGMHSI
Sbjct: 350 FAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSI 409

Query: 417 VQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           V RPMVVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRR+KDVVE+P+RLLLDI
Sbjct: 410 VSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 463

Length = 463

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  547 bits (1413), Expect = 0.0
 Identities = 201/405 (49%), Positives = 264/405 (65%), Gaps = 33/405 (8%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           V+  VP + ES+T+ T+A + K PGD V+ DE + +IETDKV ++V +P AGV+ E++A+
Sbjct: 3   VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAE 62

Query: 159 EGETVEPGTKIAVISKSGEGVAHVAPSEKIPEK----AAPKPPSAEKAKEDKPQPKV--- 211
           EG+TV  G  +  I +     A  A +          A  +  +A +   D   P     
Sbjct: 63  EGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKL 122

Query: 212 --------------------------ETVSEKPKAPSPPPPKRTATEPQLPPKERERRVP 245
                                       ++    AP+ P     A  P       E RVP
Sbjct: 123 AAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVP 182

Query: 246 MTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVK 305
           MTRLRK +A RL ++QNT AMLTTFNEVDMT +M LR +YKDAF +KHGVKLG MS FVK
Sbjct: 183 MTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVK 242

Query: 306 AAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEIN 365
           A V  L+  P +NA IDGDDI+Y +Y DI IAVGT +GLVVPV+R+AD+++FA+IEK+I 
Sbjct: 243 AVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIA 302

Query: 366 TLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGG 425
            LAKKA DG +SI+E+ GG+FTI+NGGV+GSL+STPIINPPQSAILGMH I +RP+ V G
Sbjct: 303 ELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNG 362

Query: 426 NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
            +V RPMMY+AL+YDHR+IDG+EAV FL  IK+++E+P RLLLD+
Sbjct: 363 QIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDPERLLLDL 407

Length = 407

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  524 bits (1352), Expect = 0.0
 Identities = 196/370 (52%), Positives = 261/370 (70%), Gaps = 2/370 (0%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           VP MG+SI++GT+ ++ K  GD V+ DE I  IETDKV++D+ +P +GVI ++ A+EG+T
Sbjct: 49  VPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT 108

Query: 163 VEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETV--SEKPKA 220
           VE G  ++ I   G   A    +    +     P   + A      P           K 
Sbjct: 109 VEVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKP 168

Query: 221 PSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMK 280
           P P P  +    P      RE RVPM+R+R+R+A RLK SQNT AMLTTFNE DM+ LM+
Sbjct: 169 PEPAPAAKPPPTPVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALME 228

Query: 281 LRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGT 340
           LR EYKD F +KHGVKLG MS FVKA+   L+  PI+NA IDGD+I+YR+Y+DIS+AV T
Sbjct: 229 LRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVAT 288

Query: 341 SKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLST 400
             GLVVPVIRN +  +FA+IEKE+  LA+KA +  +++++M GG+FTISNGGV+GSL+ T
Sbjct: 289 PTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGT 348

Query: 401 PIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVV 460
           PIINPPQSAILGMH+I +RP+VVG  +V RP+MY+ALTYDHRLIDGR+AV FL++IKD++
Sbjct: 349 PIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLI 408

Query: 461 EEPRRLLLDI 470
           E+P R+LLD+
Sbjct: 409 EDPARMLLDL 418

Length = 418

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  501 bits (1291), Expect = e-177
 Identities = 203/405 (50%), Positives = 269/405 (66%), Gaps = 35/405 (8%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           ++  VP + ESIT+GT+A++ K  GD V+ DE I +IETDKV ++V SP  GV++E++ K
Sbjct: 1   IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFK 60

Query: 159 EGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVS--- 215
           EG+TVE G  +A++ + G       P++   EK      SA  A          + +   
Sbjct: 61  EGDTVESGQVLAILEE-GNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARR 119

Query: 216 ------------------------------EKPKAPSPPPPKRTATEPQLPPKERERRVP 245
                                         E P +   P P   A  P    +  E RV 
Sbjct: 120 LAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTR-PEERVK 178

Query: 246 MTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVK 305
           MTRLR+R+A RLK++QN+ AMLTTFNEVDM+ +M+LR  YK+ F +KHGVKLG MS FVK
Sbjct: 179 MTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVK 238

Query: 306 AAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEIN 365
           A V+ L+  P +NA IDGDDI+Y+DY DIS+AV T +GLVVPV+RNAD+M+FADIEKEI 
Sbjct: 239 AVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIA 298

Query: 366 TLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGG 425
            L KKA DG +++++M GG+FTI+NGGV+GSL+STPIINPPQSAILGMH I +RP+ V G
Sbjct: 299 DLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNG 358

Query: 426 NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
            +  RPMMY+AL+YDHRLIDG+EAV FL  IK+++E+PRRLLLD+
Sbjct: 359 QIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRLLLDL 403

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  385 bits (991), Expect = e-131
 Identities = 171/399 (42%), Positives = 241/399 (60%), Gaps = 33/399 (8%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           +P +GE++T+GT+ ++LK  GD+V+  + + ++ETDK T++V +P+AGV+ +++ +EG+T
Sbjct: 7   MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT 66

Query: 163 VEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKV----------- 211
           V  G  IA I + G      A +   P  AAP    A  A     +              
Sbjct: 67  VPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREA 126

Query: 212 ------------------ETVSEKPKAPSPPPPKRTATEPQLPPKER-ERRVPMTRLRKR 252
                             + V       +                   E RVPM+R+RK 
Sbjct: 127 GIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKA 186

Query: 253 VATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQ 312
           +A R+ +S+ T   LT FNEVDMT LM LR + K+ F +K GVKL  +S  VKA V  L+
Sbjct: 187 IAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKAVVKALK 245

Query: 313 NQPIINAVIDGDD--IIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKK 370
             P +NA IDGD   I+Y  Y++I IAV T +GLVVPVIR+ADK + A+I KEI  LAKK
Sbjct: 246 KFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKK 305

Query: 371 ANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPR 430
           A DG ++ +EM GG+FTISN G++GSL+ TPIINPPQ AILG+ +I +RP+VVGG +V R
Sbjct: 306 ARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVR 365

Query: 431 PMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLD 469
           PMMY++L+YDHR+IDG EA  FL  +K+++E+P RLLL+
Sbjct: 366 PMMYLSLSYDHRVIDGAEAARFLVALKELLEDPERLLLE 404

Length = 404

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  355 bits (913), Expect = e-119
 Identities = 144/409 (35%), Positives = 220/409 (53%), Gaps = 48/409 (11%)

Query: 104 PFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETV 163
           P +GE +T+G + ++L   GD V+  +P+A++ETDK T+++ SP AG + +L+ +EG+ V
Sbjct: 8   PDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVV 67

Query: 164 EPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPK---- 219
             G+ IAVI + GE  A  A        A    P+A  A    P       +        
Sbjct: 68  PVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKA 127

Query: 220 ---------------------------------------APSPPPPKRTATEPQLPPKER 240
                                                  AP+       A  P     E 
Sbjct: 128 SPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEG 187

Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
           E RVP++ +RK +A R+ +S+      T  +EVD+T L+ LR + K       GVKL + 
Sbjct: 188 EERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI-----GVKLTVT 242

Query: 301 SGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADI 360
              +KA    L+  P +NA  D D I+ + Y++I IAV T  GL+VPVIR+ADK +  ++
Sbjct: 243 DFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFEL 302

Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
            +EI  LA+KA +G +  +E+ GG+FTISN G++G    TPIINPP+ AILG+ +IV+RP
Sbjct: 303 AREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERP 362

Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLD 469
           +VV G +V R +M ++L++DHR+IDG +A  FL+ +K+++E P  LLL+
Sbjct: 363 VVVDGEIVVRKVMPLSLSFDHRVIDGADAARFLKALKELLENPALLLLE 411

Length = 411

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  304 bits (782), Expect = 4e-98
 Identities = 142/434 (32%), Positives = 206/434 (47%), Gaps = 62/434 (14%)

Query: 95  GGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKE 154
           GG +V+  VP +GE IT+  + ++L   GD VE D+ +  +ETDK T+++ SP AGV+KE
Sbjct: 116 GGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKE 174

Query: 155 LVAKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPK---- 210
           +  K G+ V  G+ + VI  +    A  A        AA     A               
Sbjct: 175 IKVKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPA 234

Query: 211 ----------------------------------------------VETVSEKPKAPSPP 224
                                                         V+       A +  
Sbjct: 235 AAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAAA 294

Query: 225 PPKRTATEPQLPPKER--------ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMT 276
                     L P  +            P++R++K  A  L  S  T   +T F+E D+T
Sbjct: 295 AAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADIT 354

Query: 277 NLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--GDDIIYRDYIDI 334
           +L  LR + K    EK GVKL ++  F+KA V+ L+  P+ NA +D  GD++ Y+ Y +I
Sbjct: 355 DLEALRKQLKKEA-EKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNI 413

Query: 335 SIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVY 394
             AV T  GLVVPVI++ DK +  +I +EI  LAKKA DG +  D+M GG FTIS+ G  
Sbjct: 414 GFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGI 473

Query: 395 GSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLR 454
           G    TPIIN P+ AILG+     +P+  G   VPR M+ ++L+YDHR+IDG  A  F  
Sbjct: 474 GGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATAARFTN 533

Query: 455 RIKDVVEEPRRLLL 468
            +K ++ +PRR+LL
Sbjct: 534 YLKQLLADPRRMLL 547

Length = 547

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  278 bits (714), Expect = 2e-92
 Identities = 98/213 (46%), Positives = 144/213 (67%), Gaps = 2/213 (0%)

Query: 257 LKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPI 316
           + +S+ T    T  +EVD+T L+ LR + K+   ++ G+KL  +   VKA    L+  P 
Sbjct: 1   MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKE-GLKLTFLDFLVKAVALALKEFPE 59

Query: 317 INAVIDGDD-IIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGS 375
           +NA  DGD  I+Y+ Y++I IAV T  GL+VPVIRNAD+ +  +I KEI  LA++A DG 
Sbjct: 60  LNASWDGDAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGK 119

Query: 376 ISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYI 435
           +  +++ GG+FTISN G++G    TPIINPPQ AILG+ +I +RP+VV G +V R +M +
Sbjct: 120 LKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVVVDGEIVIRKVMPL 179

Query: 436 ALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
           +L++DHR+IDG EA  FL  +K+++E P  LLL
Sbjct: 180 SLSFDHRVIDGAEAARFLNDLKELLENPELLLL 212

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  245 bits (628), Expect = 2e-74
 Identities = 119/437 (27%), Positives = 192/437 (43%), Gaps = 63/437 (14%)

Query: 92  SSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGV 151
            +    + D  VP +G    +  + + +   GD+VE ++ +  +E DK +++V +P AG 
Sbjct: 200 PAAAAGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGT 257

Query: 152 IKELVAKEGETVEPGTKIAVISKSGE--GVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQP 209
           +KE+    G+ V+ G+ I      G     A        P  AA K  +   A   K + 
Sbjct: 258 VKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEG 317

Query: 210 KVETVSEKPKAPSPPPPKRTATE------------------------------------- 232
           K E         + P  +R A E                                     
Sbjct: 318 KSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAP 377

Query: 233 ---------PQLPP---------KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVD 274
                    P L P          E E  V + R++K     L  +      +T F++ D
Sbjct: 378 AAAAAGGGGPGLLPWPKVDFSKFGEIEE-VELGRIQKISGANLHRNWVMIPHVTQFDKAD 436

Query: 275 MTNLMKLRSEYKD-AFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVI--DGDDIIYRDY 331
           +T L   R +    A   K GVK+  +   +KA  + L+  P  N+ +  DG  +  + Y
Sbjct: 437 ITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKY 496

Query: 332 IDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNG 391
           ++I IAV T  GLVVPV ++ +K    ++ +E+  ++KKA DG ++  +M GG FTIS+ 
Sbjct: 497 VNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSI 556

Query: 392 GVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVF 451
           G  G+   TPI+N P+ AILG+      P+  G    PR M+ ++L+YDHR+IDG +   
Sbjct: 557 GGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDGADGAR 616

Query: 452 FLRRIKDVVEEPRRLLL 468
           F+  I D + + RRL+L
Sbjct: 617 FITIINDRLSDIRRLVL 633

Length = 633

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  224 bits (571), Expect = 8e-67
 Identities = 143/455 (31%), Positives = 209/455 (45%), Gaps = 80/455 (17%)

Query: 88  SHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASP 147
           + P +   G+  +  +P +GES+T+GT+  +LK  GD VE+DEP+ ++ TDKV  ++ SP
Sbjct: 116 AAPQAGGSGEATEVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSP 175

Query: 148 ----------------EAGVIKELVAKEGETVEPGTKIAVISKSGEGVA----------H 181
                           E G +  ++           +    + S  G            H
Sbjct: 176 VAGTLLEIRAPEDDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPH 235

Query: 182 VAPSEKIPEKAAPKP-------------------PSAEKAKEDK---------------- 206
            AP    P  A  K                    P   K  +DK                
Sbjct: 236 AAPDPPAPAPAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRI 295

Query: 207 PQPKVETVSEKPKAPSPPPPKRT-ATEPQLPP-----------KERERRVPMTRLRKRVA 254
            +  V   ++  +           A  P  P            K R     M R+R+  A
Sbjct: 296 RKQDVLAAAKAAEEARAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITA 355

Query: 255 TRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQ 314
            +  +S  T A LT  +EVDMT +  LR+  K+ FLEK+GV L  +  FV+A    L+  
Sbjct: 356 DKTIESLQTSAQLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAH 415

Query: 315 PIINAVI--DGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKAN 372
           P +NA    +  ++ Y D   + IAV T +GL+VPVI NA  ++   + K IN LA +A 
Sbjct: 416 PNVNASYNAETKEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARAR 475

Query: 373 DGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVV----GGNVV 428
           D  +  DE++GG+FTI+N G  G+L  TPI+NPPQ+AILG  +IV+RP V+    GG  +
Sbjct: 476 DNKLKPDELSGGTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESI 535

Query: 429 P-RPMMYIALTYDHRLIDGREAVFFLRRIKDVVEE 462
             R + Y+ LTYDHRL+DG +A  FL  IK  +EE
Sbjct: 536 AIRSVCYLPLTYDHRLVDGADAGRFLTTIKKRLEE 570

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  200 bits (511), Expect = 2e-59
 Identities = 122/434 (28%), Positives = 187/434 (43%), Gaps = 71/434 (16%)

Query: 104 PFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG-ET 162
           P +  ++T G LAK+LK  GD+V   + IA+IETDK T++  + E G + +++  EG + 
Sbjct: 5   PALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKD 64

Query: 163 VEPGTKIAVISKSGEGVAHVAPSEKIPEKA---------APKPPSAEKAKEDKPQPK--- 210
           V     IAV+ +  E VA    + K+   A         AP  P +       PQ +   
Sbjct: 65  VPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPE 124

Query: 211 -------------------------------------------------VETVSEKPKAP 221
                                                            +E+   +  A 
Sbjct: 125 PSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPAS 184

Query: 222 SPPPPKRT--ATEPQLPPKERE--RRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTN 277
           +      T  AT P   P        VP++ +RK +A RL +S+ T        E ++  
Sbjct: 185 ANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNVDK 244

Query: 278 LMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIA 337
           L+ LR E      E    KL +    +KA+   L+  P  N+    + I     +DIS+A
Sbjct: 245 LLALRKELNAMASEV--YKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVA 302

Query: 338 VGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL 397
           V T  GL+ P++RNAD    + I  EI  LAK+A +  +  +E  GG+FTISN G++G  
Sbjct: 303 VATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIK 362

Query: 398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVP---RPMMYIALTYDHRLIDGREAVFFLR 454
             T IINPPQ+ IL + ++    +V            +M + L+ DHR+IDG     FL+
Sbjct: 363 DFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLK 422

Query: 455 RIKDVVEEPRRLLL 468
             K  +E P  +LL
Sbjct: 423 SFKKYLENPIEMLL 436

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  198 bits (505), Expect = 2e-57
 Identities = 130/441 (29%), Positives = 202/441 (45%), Gaps = 64/441 (14%)

Query: 90  PFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEA 149
           P + +   + +  VP +G  I   T+ + L   GD V  D+ +  +E+DK +++V +P +
Sbjct: 108 PAAGQSSGVQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPAS 166

Query: 150 GVIKELVAKEGETVEPGTKIAVISKSGEGVAHVAPSEKIP---------EKAAPKPPSAE 200
           GV+K +  K G++V  G  I  +S +G   A                  +      P+A 
Sbjct: 167 GVVKSVKVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAA 226

Query: 201 KAKEDKPQ--------------PKV-------------------------ETVSEKPKAP 221
           KA+   PQ              P V                         E V    K P
Sbjct: 227 KAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEP 286

Query: 222 SPPPPKRTAT----EPQLPPKERE--------RRVPMTRLRKRVATRLKDSQNTFAMLTT 269
           S       A+     P   P              V M+R+RK     L  +      +T 
Sbjct: 287 SVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTH 346

Query: 270 FNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--GDDII 327
           F++ D+T +   R +   A +EK GVKL ++   +KA  + L+  P  NA +D  G+ +I
Sbjct: 347 FDKADITEMEAFRKQQN-AAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLI 405

Query: 328 YRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFT 387
            + Y++I +AV T  GL+VPVI++ D+    ++  E++ LAKKA DG ++ DEM G  FT
Sbjct: 406 LKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFT 465

Query: 388 ISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGR 447
           IS+ G  G    TPI+N P+ AILG+      P+  G    PR M+ ++L+YDHR+IDG 
Sbjct: 466 ISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLSLSYDHRVIDGA 525

Query: 448 EAVFFLRRIKDVVEEPRRLLL 468
           +A  F   I + + + RRLLL
Sbjct: 526 DAARFTTYICESLADIRRLLL 546

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score =  187 bits (477), Expect = 8e-56
 Identities = 98/263 (37%), Positives = 144/263 (54%), Gaps = 9/263 (3%)

Query: 206 KPQPKVETVSEKPKAPSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFA 265
            P       S +  A +  P    A  P+L  K    R  +  +RK +A  + +S +  A
Sbjct: 48  TPAEAASVSSAQQAAKTAAP---AAAPPKLEGK----REKVAPIRKAIARAMTNSWSNVA 100

Query: 266 MLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--G 323
            +   NE+DMT L  LR   KD  L+  GVKL  +    KA +  L+  PI  A  D   
Sbjct: 101 YVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEAT 160

Query: 324 DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAG 383
            +++Y D +++ IAV T  GL+VPVI+NA K++  +I KEI+ LAK A +  I  DEM G
Sbjct: 161 SELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKG 220

Query: 384 GSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRL 443
           GSFTI+N G  GSL   P+IN P+ AI G+ +I+ + +V  G +V   +M++ +  DHR 
Sbjct: 221 GSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRW 280

Query: 444 IDGREAVFFLRRIKDVVEEPRRL 466
           IDG     F  R+K+++E+P  L
Sbjct: 281 IDGATIGRFASRVKELLEKPEIL 303

Length = 306

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score =  170 bits (432), Expect = 8e-49
 Identities = 90/261 (34%), Positives = 146/261 (55%), Gaps = 6/261 (2%)

Query: 214 VSEKPKAPSPPPPKRTATEPQLP----PKERERRVPMTRLRKRVATRLKDSQNTFAMLTT 269
           + E  +  S   P +     ++P    P     R+PMT +RK +A R+ +S  T    T 
Sbjct: 87  LPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPMRKVIAQRMVESYLTAPTFTL 146

Query: 270 FNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVI--DGDDII 327
             EVDMT ++ LR +  +  +E  G K  +      A V  L   P INA +  DG  II
Sbjct: 147 NYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTII 206

Query: 328 YRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFT 387
             +Y+++++AVG   GL+ PV+ NA+KM+ +++      +  +  DG ++  E+   +FT
Sbjct: 207 THNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFT 266

Query: 388 ISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGR 447
           ISN G++G     PIIN P SAILG+ S +++P+VV G +V RP+M + LT DHR++DG 
Sbjct: 267 ISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGM 326

Query: 448 EAVFFLRRIKDVVEEPRRLLL 468
               F++ +K+++E P  +L+
Sbjct: 327 AGAKFMKDLKELIETPISMLI 347

Length = 347

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  163 bits (413), Expect = 2e-44
 Identities = 125/425 (29%), Positives = 200/425 (47%), Gaps = 63/425 (14%)

Query: 104 PFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG-ET 162
           P +  ++T+G +A++LK  GD+V   E + ++ETDK T+++   E G + ++V  +G + 
Sbjct: 118 PSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE 177

Query: 163 VEPGTKIAVISKSGEGVAHV------APSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSE 216
           ++ G  IA+  +  E +         + +     KA P PP  ++ + +KP    E  + 
Sbjct: 178 IKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKAS 237

Query: 217 KPKAPSP--------PPPKRTATEPQLP--------PKERERR----------------- 243
           KP AP          P  ++ A +  +P        P  R  +                 
Sbjct: 238 KPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAP 297

Query: 244 --------------VPMTRLRKRVATRLKDSQNTFA--MLTTFNEVDMTNLMKLRSEYKD 287
                         +P T++RK  A+RL  S+ T     LT    VD   LM LRS+  +
Sbjct: 298 PSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVD--KLMALRSQL-N 354

Query: 288 AFLEKHGVKLGLMSGFV-KAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVV 346
           +  E  G K   ++  V KAA   L+  P  N+    D I     ++I++AV T  GL V
Sbjct: 355 SLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYV 414

Query: 347 PVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISN-GGVYGSLLSTPIINP 405
           PV+++ADK   + I +E+  LA+KA + S+  ++  GG+FT+SN GG +G      IINP
Sbjct: 415 PVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINP 474

Query: 406 PQSAILGMHSIVQR--PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEP 463
           PQSAIL + S  +R  P            M + L+ DHR+IDG     +L+  K  +E P
Sbjct: 475 PQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENP 534

Query: 464 RRLLL 468
             +LL
Sbjct: 535 ESMLL 539

Length = 539

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  129 bits (325), Expect = 5e-33
 Identities = 57/200 (28%), Positives = 109/200 (54%), Gaps = 4/200 (2%)

Query: 272 EVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGD--DIIYR 329
           E+++  L++L++ +++   +   VK   +   +K+    L   P++N+  + +  +I  +
Sbjct: 215 EINVDALVELKASFQENNTD-PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLK 273

Query: 330 DYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTIS 389
              +I +A+ T  GLVVP I+N   ++  +I KE++ L   A +  ++ +++ GG+ T+S
Sbjct: 274 GSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLS 333

Query: 390 NGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVG-GNVVPRPMMYIALTYDHRLIDGRE 448
           N G  G    +P++N P+ AI+ +  I + P  V  GNV P  +M + +  DHR++DG  
Sbjct: 334 NIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGAT 393

Query: 449 AVFFLRRIKDVVEEPRRLLL 468
              F    K  VE+P  L+L
Sbjct: 394 VARFCNEWKSYVEKPELLML 413

Length = 416

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score =  100 bits (251), Expect = 6e-26
 Identities = 32/71 (45%), Positives = 52/71 (73%)

Query: 102 VVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE 161
            +P +GES+T+GT+ ++L   GD VE  + +A++ETDK T++V +P AGV+ +++ +EG+
Sbjct: 4   KMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGD 63

Query: 162 TVEPGTKIAVI 172
           TV  G  IAVI
Sbjct: 64  TVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 96.2 bits (239), Expect = 3e-21
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 12/136 (8%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           +P +GES+T+GT+  +LK  GD VE DEP+ ++ TDKV  ++ SP AGV+ E+ A E +T
Sbjct: 7   MPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPEDDT 66

Query: 163 VEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPS 222
           VE G  +A+I + GE     A SE  P    P+     +A    P P     + +  AP+
Sbjct: 67  VEVGGVLAIIGEPGE-----AGSEPAPAAPEPEAAPEPEAPAPAPTP-----AAEAPAPA 116

Query: 223 PPPPKRT--ATEPQLP 236
            P    +  ATE ++P
Sbjct: 117 APQAGGSGEATEVKMP 132

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 94.9 bits (237), Expect = 9e-21
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           ++  VP +GE + +  + ++L   GD VE D+P+  +ETDK T+++ SP AGV+KE+  K
Sbjct: 3   IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVK 61

Query: 159 EGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQP 209
            G+TV  G  +AVI  +G   A  AP+       A    +A       P  
Sbjct: 62  VGDTVSVGGLLAVIEAAGAAAAAAAPAA--AAAPAAAAAAAPAPAAAAPAA 110

Length = 547

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 83.8 bits (208), Expect = 2e-17
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 5/130 (3%)

Query: 98  LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVA 157
           L+ A+ P M E    GTLAK+LK  GD+V+  + IA+IETDK T++V + + G + +++ 
Sbjct: 6   LMPALSPTMEE----GTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILV 61

Query: 158 KEG-ETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSE 216
            EG E V+  T IAV+ + GE  +    +     +AA   P+A  A   K          
Sbjct: 62  PEGTEGVKVNTPIAVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPA 121

Query: 217 KPKAPSPPPP 226
            P A     P
Sbjct: 122 APAAEVAADP 131

Length = 464

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 84.2 bits (209), Expect = 4e-17
 Identities = 81/327 (24%), Positives = 133/327 (40%), Gaps = 52/327 (15%)

Query: 161 ETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKA 220
            +    T  A  + +       AP+ K P   AP PP+A         PK    +    A
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA---APPKPAAAAAAAAA 95

Query: 221 PSPPPPKRTATEPQLPPKERERRVPMTRLR---KRVATRLKDSQNTFAMLTTFNEVDMTN 277
           P+ PP    A  P     E E     T LR     VA  +  S       T+   V    
Sbjct: 96  PAAPPAAAAAAAPAAAAVEDEV----TPLRGAAAAVAKNMDASL-EVPTATSVRAVPAKL 150

Query: 278 LMKLRSEYKDAFLEKH-----GVKLGL--MSGFVKAAVSGLQNQPIIN---AVIDGD-DI 326
           L+  R       +  H     G K+    + G+  A V  L+  P +N   A +DG   +
Sbjct: 151 LIDNR-----IVINNHLKRTRGGKVSFTHLIGY--ALVQALKAFPNMNRHYAEVDGKPTL 203

Query: 327 IYRDYIDISIAVGT-----SKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEM 381
           +   ++++ +A+       S+ LVVP I+ A+ M+FA        + ++A DG ++ D+ 
Sbjct: 204 VTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDF 263

Query: 382 AGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP------------MVVGGNVVP 429
            G + +++N G  G++ S P +   Q AI+G+ ++                + +      
Sbjct: 264 QGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGIS----- 318

Query: 430 RPMMYIALTYDHRLIDGREAVFFLRRI 456
             +M +  TYDHR+I G E+  FLR I
Sbjct: 319 -KVMTLTSTYDHRIIQGAESGEFLRTI 344

Length = 1228

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 79.7 bits (197), Expect = 7e-16
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           VP +G    +  + + L   GD+VE ++ +  +E DK +++V SP+AGV+KE+  K G+ 
Sbjct: 7   VPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK 64

Query: 163 VEPGTKIAVI-SKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKE 204
           VE G  I +  S  G   A  A +E+  E A    P+A  AK+
Sbjct: 65  VETGALIMIFESADGAADAAPAQAEEKKEAAPAAAPAAAAAKD 107

Length = 633

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
            P +GES+ +GT A++L   GD+V+  + + ++E  K+ +++ +P AGV+KE++ KEG+T
Sbjct: 5   SPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDT 63

Query: 163 VEPGTKIAVI 172
           VE G  +A I
Sbjct: 64  VEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 76.6 bits (189), Expect = 8e-15
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 92  SSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGV 151
           +       D  VP +G    +  + + L   GD VE ++ +  +E DK +++V +P AG 
Sbjct: 99  APAAAAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGT 156

Query: 152 IKELVAKEGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKE 204
           +KE+    G+ V  G+ I V   +GE  A  AP+       A  P +A   K+
Sbjct: 157 VKEIKVNVGDKVSTGSLIMVFEVAGEAPA-AAPAAAEAAAPAAAPAAAAGVKD 208

Length = 633

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 102 VVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE 161
            +P  G S+T+G +A +L   GD VE  + +  +ETDK+T +V +P AG ++  VA+EGE
Sbjct: 6   TMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE 65

Query: 162 TVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEK 217
           T+  G  +AV+  +   V+       I   A    P     ++  P P+   +  +
Sbjct: 66  TLPVGALLAVV--ADAEVSDAEIDAFIAPFARRFAPEGIDEEDAGPAPRKARIGGR 119

Length = 371

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 2/101 (1%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           VP +G++  +G + + L  PGD+VE  + +  +E+DK +++V S  AG+IKE+  K G+T
Sbjct: 5   VPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT 63

Query: 163 VEPGTKIAVI-SKSGEGVAHVAPSEKIPEKAAPKPPSAEKA 202
           +  G  IA +   +G      A  E  P   A  P  A +A
Sbjct: 64  LPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGAPAPAAQA 104

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           +P + + + DGT+ K+LK  GD+V+  + +A+IE  K T DV +P++G +K+++ KEG  
Sbjct: 4   IPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK 63

Query: 163 VEPGTKIAVI 172
           VE  T +  I
Sbjct: 64  VEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 54.3 bits (132), Expect = 7e-10
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           GT+ K L   GD+VE  +P+A +E  K+  +V +P AGV+KE++ KEG+ VE G  + VI
Sbjct: 8   GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           GT+ K     GD V+  + +A IE  K+  ++ +P  GV+KE++ K G+ VE G  +AVI
Sbjct: 79  GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138

Query: 173 SK 174
             
Sbjct: 139 EP 140

Length = 140

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 113  GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
            G   K L   GDRVE  +P+  +E  K+ + V++P AG + +++ + G+ V+ G  +AV+
Sbjct: 1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVL 1200

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           GT+ K     GD+V+  + +  +E  K+  ++ +P  G +KE++ KEG+ V PG  +  I
Sbjct: 531 GTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEI 590

Query: 173 SK 174
             
Sbjct: 591 EP 592

Length = 592

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score = 44.4 bits (106), Expect = 1e-04
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 113  GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
            G++   L   GD V+  +P+A IE  K+   + +P  G +K ++ K G+ VE G  +  +
Sbjct: 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVEL 1144

Query: 173  SK 174
              
Sbjct: 1145 EP 1146

Length = 1146

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPG 166
           G + K +   GD VE  + +  +E+ K+ I + + EAG +K++  +EG+ V  G
Sbjct: 10  GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEG 63

Length = 70

>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 8/127 (6%)

Query: 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGV 179
           K  G+  E +   A+ E  K     A+PEAG   E  A  GE            +     
Sbjct: 158 KEAGEGAEAEGAAAEKEGAKEEAAAAAPEAGS-GEEAAAPGEEAGAAGAEGEAGEEPAAD 216

Query: 180 AHVAPSEKIPEKAAPKPPSAEKAK-------EDKPQPKVETVSEKPKAPSPPPPKRTATE 232
           A     E  PE+AAP+ P AE+AK       E+KP  +    S   +AP+       A E
Sbjct: 217 AEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAGASSAAQEAPAAEQEAAPAEE 276

Query: 233 PQLPPKE 239
           P  PP+E
Sbjct: 277 PAAPPQE 283

Length = 296

>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion]

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 36/62 (58%)

Query: 113  GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
            G + +     GD+V+  + +A IE  K+   +++P  G +KE++ K+G+ ++ G  + V+
Sbjct: 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVV 1147

Query: 173  SK 174
             +
Sbjct: 1148 EE 1149

Length = 1149

>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 113  GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
            G + +     G  V   +P+  +E  K+   + +P+ G IKE++ K GE ++    + V+
Sbjct: 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVL 1142

This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 107 GESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETV--- 163
           GE I +  L ++    GD+VE  +P+ ++++DK TI++ S   G + ++    G+ V   
Sbjct: 7   GEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVG 66

Query: 164 EPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQP 209
           E   KI V     E   H+     +    +    S  ++ E     
Sbjct: 67  ETLLKIMV-----EDSQHLRSDSLLLPTDSSNIVSLAESDERGSNL 107

Length = 416

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAV 171
            GT+       G  V   + +  +E  K+   + +P  GV+ +L   EG+ V  GT +  
Sbjct: 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVE 642

Query: 172 I 172
            
Sbjct: 643 F 643

Length = 645

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	100.0
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PRK13757	219	chloramphenicol acetyltransferase; Provisional	99.94
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	99.93
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	99.84
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.75
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.69
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.69
PRK06748	83	hypothetical protein; Validated	99.66
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.55
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.5
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.47
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.46
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.45
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.44
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.36
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.35
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.29
PRK07051	80	hypothetical protein; Validated	99.29
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.28
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.24
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.23
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.19
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.18
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.14
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.13
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.02
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.96
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.95
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.92
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.82
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.75
PRK12999	1146	pyruvate carboxylase; Reviewed	98.73
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.6
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.3
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.19
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	98.1
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	97.97
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.84
PRK09783	409	copper/silver efflux system membrane fusion protei	97.79
PRK00624	114	glycine cleavage system protein H; Provisional	97.76
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.74
PRK13380	144	glycine cleavage system protein H; Provisional	97.71
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.67
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.65
PRK01202	127	glycine cleavage system protein H; Provisional	97.62
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.59
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.41
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.4
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.39
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.36
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.26
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.26
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.17
PRK12784	84	hypothetical protein; Provisional	97.13
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.1
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.06
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.02
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	96.91
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	96.8
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.79
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	96.74
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.55
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.15
PRK06748	83	hypothetical protein; Validated	96.01
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	95.92
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.85
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	95.67
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.46
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	95.34
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	95.31
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	95.21
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	94.95
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	94.92
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	94.77
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	94.73
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	94.39
PF13437	105	HlyD_3: HlyD family secretion protein	94.11
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	93.97
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	93.79
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	93.46
COG3608	331	Predicted deacylase [General function prediction o	93.4
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	93.33
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	93.27
PF00529	305	HlyD: HlyD family secretion protein the correspond	93.16
PRK10476	346	multidrug resistance protein MdtN; Provisional	93.05
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	92.92
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	92.82
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	92.66
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	92.64
PRK07051	80	hypothetical protein; Validated	92.47
PF07247	480	AATase: Alcohol acetyltransferase; InterPro: IPR01	91.9
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	91.75
TIGR02946	446	acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b	91.59
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.33
PRK11578	370	macrolide transporter subunit MacA; Provisional	91.17
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	91.11
PRK09859	385	multidrug efflux system protein MdtE; Provisional	91.08
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	91.06
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	90.97
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.81
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	90.6
PRK15136	390	multidrug efflux system protein EmrA; Provisional	90.52
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	90.51
PF00529	305	HlyD: HlyD family secretion protein the correspond	89.97
PRK14042	596	pyruvate carboxylase subunit B; Provisional	89.92
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	89.91
PRK03598	331	putative efflux pump membrane fusion protein; Prov	89.82
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	89.44
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	87.84
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	87.48
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	87.46
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	87.15
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	87.06
PRK05035	695	electron transport complex protein RnfC; Provision	86.29
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	86.23
PRK09439	169	PTS system glucose-specific transporter subunit; P	85.96
PRK09783	409	copper/silver efflux system membrane fusion protei	85.79
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	85.44
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	85.41
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	85.34
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	85.29
PRK09282	592	pyruvate carboxylase subunit B; Validated	85.15
PRK14040	593	oxaloacetate decarboxylase; Provisional	84.77
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	84.66
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	84.63
PF00668	301	Condensation: Condensation domain; InterPro: IPR00	84.6
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	84.55
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	84.0
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	83.85
COG4072	161	Uncharacterized protein conserved in archaea [Func	83.7
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	82.95
PF13437	105	HlyD_3: HlyD family secretion protein	82.6
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	82.6
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	82.6
COG2190	156	NagE Phosphotransferase system IIA components [Car	82.52
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	82.21
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	81.68
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	81.56
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	81.44
PRK12784	84	hypothetical protein; Provisional	81.3
PRK05305	206	phosphatidylserine decarboxylase; Provisional	81.02
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	80.64
COG2190	156	NagE Phosphotransferase system IIA components [Car	80.55
PRK09294	416	acyltransferase PapA5; Provisional	80.5
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	80.39
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	80.28

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=1.1e-88  Score=707.55  Aligned_cols=459  Identities=72%  Similarity=1.085  Sum_probs=360.2

Q ss_pred             CcceeEeeeecCCCCccccccccccccccccceeeccccccceeeeccCcccccccceeecCCCccCCCCccchhhcccc
Q 036766            1 MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIFPGCSKGCQPLRDVISSTQK   80 (470)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (470)
                      |+-.+-||-.+.|||+||.+.++|.-|-+.+..+..+  |.+..-+.-.-.|.-+|-.....+...+|++...      -
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~   73 (463)
T PLN02226          2 MLRAVIRRASTRGSSPSLFGKSLQSSRVAASSPSLLS--GSETGALLHRGNHAHSFHNLALPGNSGISRSASL------V   73 (463)
T ss_pred             cHHHHHHhhccCCCChhhhhhhhhhchhhccCccccc--ccccchhhhccccccchhhcccCCccccCCchhh------h
Confidence            3444445667889999999999998876522222111  1112222222225557777777777777775443      2


Q ss_pred             ccccccccccccCCCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC
Q 036766           81 ATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG  160 (470)
Q Consensus        81 ~~~~~~~~r~~~~~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG  160 (470)
                      ...-+.|-|.|....+.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|
T Consensus        74 ~~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eG  153 (463)
T PLN02226         74 SSTLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEG  153 (463)
T ss_pred             hhhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCC
Confidence            23345688889987776799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCCCC--CCCCCCCCC-CCCCCCCC
Q 036766          161 ETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKA--PSPPPPKRT-ATEPQLPP  237 (470)
Q Consensus       161 ~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~-~~~~~~~~  237 (470)
                      |.|++|++|++|+..+++.+........+...++. +..  +...+....+..+|...+.  .+.+...+. ...+..+.
T Consensus       154 d~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~v~asp~~r~~~~~~~~~~~~~~~~~~~~~~  230 (463)
T PLN02226        154 DTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPK-PSP--PAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPP  230 (463)
T ss_pred             CEecCCCEEEEeccCCccccccCccCCCCCCCCCC-CCC--ccccccccCCCcchhhccccCCCCCCCCcccccCccccc
Confidence            99999999999975433211100000000000000 000  0000000111111111110  000000000 00011101


Q ss_pred             CCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCcc
Q 036766          238 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPII  317 (470)
Q Consensus       238 ~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~l  317 (470)
                      ....+.+||++|||.||++|.+|++++||||++.|+|+|+|+++|+++++.+.+++|.|+||++||+||+++||++||++
T Consensus       231 ~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~l  310 (463)
T PLN02226        231 KERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVV  310 (463)
T ss_pred             CCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHh
Confidence            11245689999999999999999999999999999999999999999998776667899999999999999999999999


Q ss_pred             ceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766          318 NAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL  397 (470)
Q Consensus       318 N~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~  397 (470)
                      |+.|+++.|+++++||||+||++++||++|||++++++++.||++++++|++++|+|+|+++|++||||||||+|++|++
T Consensus       311 Na~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~  390 (463)
T PLN02226        311 NAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSL  390 (463)
T ss_pred             heEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766          398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~  470 (470)
                      +|+|||||||+||||+|++.++|++.||++++|++|+|||+||||+|||+++|+||++|+++||+|+.||+++
T Consensus       391 ~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl~~  463 (463)
T PLN02226        391 ISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI  463 (463)
T ss_pred             ceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999875

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=6.7e-85  Score=638.82  Aligned_cols=371  Identities=63%  Similarity=1.009  Sum_probs=316.0

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      .+++..|.++|+++||.|.+|++++||.|+++|.||+|||||.+++|.||.+|+|.++++++||+|.+|+.|+.|.....
T Consensus        72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~gaA  151 (457)
T KOG0559|consen   72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGAA  151 (457)
T ss_pred             eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCCC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999998544


Q ss_pred             CCCC--CCCCCCCCCC----CCCCCCCcccccCCCCCCccccccCCCCCCCCC---CCCCCCCCCCCCC------CCccc
Q 036766          178 GVAH--VAPSEKIPEK----AAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPP---PPKRTATEPQLPP------KERER  242 (470)
Q Consensus       178 ~~~~--~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~~~~~~~~~~------~~~~~  242 (470)
                      .+..  .+|+..++..    +++.+++...+. ....|..+..+ ++....++   +...+...+.+++      ...++
T Consensus       152 pa~~~~~apa~~~pk~~~a~~a~p~~~s~~~p-~~~apv~e~p~-~p~~~~P~~~~a~k~~v~~~~~~p~~~~~~~R~E~  229 (457)
T KOG0559|consen  152 PAKGGASAPAKAEPKTAPAAAAPPKPSSKPPP-KEAAPVAESPP-APSSPEPVPASAKKPSVAQPKPPPSEGATPSRSER  229 (457)
T ss_pred             CccccccCCCccCCCCCCCCCCCCCccCCCCc-cccCCCCCCCC-CCCCCCCCCccccCccccCCCCCcccccCCCcchh
Confidence            3222  2332222211    111111100000 01111111111 01000000   0011112222222      23488


Q ss_pred             eeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEe
Q 036766          243 RVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID  322 (470)
Q Consensus       243 ~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~  322 (470)
                      +++|++||++||+||++|+++.+.+|.+.||||++|+++|++|+++|.+++|+|+.|+.+|+||++.||++.|.+|+.||
T Consensus       230 RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavId  309 (457)
T KOG0559|consen  230 RVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVID  309 (457)
T ss_pred             hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccc
Q 036766          323 GDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPI  402 (470)
Q Consensus       323 ~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpi  402 (470)
                      |++|+|+|++||++||+++.||++|||||++.|+|.||..+|..|..|||+|+|..+||.||||||||-|.||..+.|||
T Consensus       310 g~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPI  389 (457)
T KOG0559|consen  310 GDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPI  389 (457)
T ss_pred             CCeeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766          403 INPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       403 i~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~  470 (470)
                      |||||+||||+++|.++|++++|++++|+||++.||||||+|||.+|.-||+.+|+++|||..|||++
T Consensus       390 INpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~~VEDP~~mll~l  457 (457)
T KOG0559|consen  390 INPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL  457 (457)
T ss_pred             cCCchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHHHHHHHhhCHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999975

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=1.8e-82  Score=656.95  Aligned_cols=376  Identities=53%  Similarity=0.870  Sum_probs=308.9

Q ss_pred             ccCCCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEE
Q 036766           91 FSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIA  170 (470)
Q Consensus        91 ~~~~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~  170 (470)
                      |+..+..+.+|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+
T Consensus        37 ~~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~  116 (418)
T PTZ00144         37 FSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLS  116 (418)
T ss_pred             cccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEE
Confidence            34445567899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCCCCCCCCCC-CCCC-C-cccccCCCCC-CccccccCCCCCCCCCCCCCCCCCCCC-C-CCCcccee
Q 036766          171 VISKSGEGVAHVAPSEKIPEKAA-PKPP-S-AEKAKEDKPQ-PKVETVSEKPKAPSPPPPKRTATEPQL-P-PKERERRV  244 (470)
Q Consensus       171 ~i~~~~~~~~~~~~~~~~~~~~a-~~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~  244 (470)
                      +|+..++..... ..+..++.++ +.+. . ...+...+.. .....+|...+..+++.+   ++.+.. + .....+.+
T Consensus       117 ~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~vr~~~~~~~~---~~~~~~~~~~~~~~~~i  192 (418)
T PTZ00144        117 EIDTGGAPPAAA-PAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA---KPPPTPVARADPRETRV  192 (418)
T ss_pred             EEcCCCcccccc-ccccCCCCCccCCCCCCCCCCCccccccccccCCchhhhccccCCCC---CCCCCCccccCCCceee
Confidence            997654321110 0000000000 0000 0 0000000000 000001110000000000   000100 0 01113458


Q ss_pred             echhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCC
Q 036766          245 PMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGD  324 (470)
Q Consensus       245 pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~  324 (470)
                      ||++|||+||++|++|++++||||++.++|+|+|+++|+++++.+.+++|.|+||++||+||+++||++||.+|++|+++
T Consensus       193 pls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~  272 (418)
T PTZ00144        193 PMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGD  272 (418)
T ss_pred             eCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCC
Confidence            99999999999999999999999999999999999999999977666678999999999999999999999999999999


Q ss_pred             eEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccC
Q 036766          325 DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIIN  404 (470)
Q Consensus       325 ~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~  404 (470)
                      ++++++++|||+||++++||++|||++++++++.||++++++|++++|+|+|+++|++||||||||+|++|+++|+||||
T Consensus       273 ~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIIn  352 (418)
T PTZ00144        273 EIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIIN  352 (418)
T ss_pred             EEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766          405 PPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       405 ~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~  470 (470)
                      |||+||||+|++.++|++.+|++++|++|+|||+||||+|||++||+||++|+++||+|+.||+++
T Consensus       353 pPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll~~  418 (418)
T PTZ00144        353 PPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL  418 (418)
T ss_pred             CCceEEEecccceeEeEEECCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcCHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999998874

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=1.2e-80  Score=646.38  Aligned_cols=374  Identities=53%  Similarity=0.850  Sum_probs=308.0

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      |.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+.++
T Consensus         1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704          1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999998655


Q ss_pred             CCCCCC-CCCCCCCCCC--CCCCCCcccc-cCCCCCCccccccC------------CC-------CC----CC---CCCC
Q 036766          177 EGVAHV-APSEKIPEKA--APKPPSAEKA-KEDKPQPKVETVSE------------KP-------KA----PS---PPPP  226 (470)
Q Consensus       177 ~~~~~~-~~~~~~~~~~--a~~~~~~~~~-~~~~~~~~~~~~~~------------~~-------~~----~a---~~~~  226 (470)
                      +..... ++....+..+  ++.++.+... ......|.+++...            .+       +.    ..   ++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~  160 (407)
T PRK05704         81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA  160 (407)
T ss_pred             cccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence            322111 0000000000  0000000000 00112333332100            00       00    00   0000


Q ss_pred             CCCCC-C--CCCCCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHH
Q 036766          227 KRTAT-E--PQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF  303 (470)
Q Consensus       227 ~~~~~-~--~~~~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~l  303 (470)
                      ..... .  +........+.+||+++||+||++|++|++++||||++.++|+|+|+++|+++++.+.++.|.|+||++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l  240 (407)
T PRK05704        161 PAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF  240 (407)
T ss_pred             CCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH
Confidence            00000 0  00001112456899999999999999999999999999999999999999999987766678999999999


Q ss_pred             HHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCC
Q 036766          304 VKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAG  383 (470)
Q Consensus       304 vkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~g  383 (470)
                      +||+++||++||+||++|+++++++++++|||+||++++||++|||++++++|+.||++++++|++++|+|+|+++|++|
T Consensus       241 ikA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~~d~~g  320 (407)
T PRK05704        241 VKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTG  320 (407)
T ss_pred             HHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCChHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 036766          384 GSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEP  463 (470)
Q Consensus       384 gtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P  463 (470)
                      |||||||+|++|+.+|+|||||||+||||+|++.++|++.+|++.+|++|+|||+||||+|||++||+||++|+++||||
T Consensus       321 gTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~p  400 (407)
T PRK05704        321 GTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDP  400 (407)
T ss_pred             ceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccC
Q 036766          464 RRLLLDI  470 (470)
Q Consensus       464 ~~lll~~  470 (470)
                      +.||+++
T Consensus       401 ~~ll~~~  407 (407)
T PRK05704        401 ERLLLDL  407 (407)
T ss_pred             HHHhhcC
Confidence            9999875

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=4.5e-80  Score=640.91  Aligned_cols=372  Identities=54%  Similarity=0.858  Sum_probs=305.9

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCCC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG  178 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~~  178 (470)
                      ++|+||+||++|++|+|++|+|++||.|++||+|++|||||++++++||++|+|.++++++|+.|++|++|++|+.+++.
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~   80 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA   80 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999865432


Q ss_pred             CCCC-CCCCCCCCC--CCCCCCCccccc-CCCCCCccccccC------------CC-------CC----CC---CCCCCC
Q 036766          179 VAHV-APSEKIPEK--AAPKPPSAEKAK-EDKPQPKVETVSE------------KP-------KA----PS---PPPPKR  228 (470)
Q Consensus       179 ~~~~-~~~~~~~~~--~a~~~~~~~~~~-~~~~~~~~~~~~~------------~~-------~~----~a---~~~~~~  228 (470)
                      .... ++...++..  +++.++.+.... ....+|.+++...            .+       +.    ..   ++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~  160 (403)
T TIGR01347        81 TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPAP  160 (403)
T ss_pred             cccccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCCCC
Confidence            1100 000000000  000000000000 0011233332100            00       00    00   000000


Q ss_pred             CCCCCCCC-CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHH
Q 036766          229 TATEPQLP-PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAA  307 (470)
Q Consensus       229 ~~~~~~~~-~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~  307 (470)
                      ..+.+... .....+.+||+++||+||++|++|++++|||+++.++|+|+|+++|+++++.+.++.|.++||++||+||+
T Consensus       161 ~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~  240 (403)
T TIGR01347       161 AAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAV  240 (403)
T ss_pred             CcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHH
Confidence            00000000 01123568999999999999999999999999999999999999999999877666789999999999999


Q ss_pred             HHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEE
Q 036766          308 VSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFT  387 (470)
Q Consensus       308 a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtft  387 (470)
                      ++||++||.||++|+++++++++++|||+||++++||++|||++++++|+.||++++++|++++|+|+|+++||+|||||
T Consensus       241 a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfT  320 (403)
T TIGR01347       241 VAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFT  320 (403)
T ss_pred             HHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhh
Q 036766          388 ISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLL  467 (470)
Q Consensus       388 ISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~ll  467 (470)
                      |||+|++|+.+|+|||||||+||||+|++.++|++.+|++++|++|+|||+||||+|||++||+||++|+++||+|+.||
T Consensus       321 ISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~p~~ll  400 (403)
T TIGR01347       321 ITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRLL  400 (403)
T ss_pred             EecCCcCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHHhcCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 036766          468 LDI  470 (470)
Q Consensus       468 l~~  470 (470)
                      +++
T Consensus       401 ~~~  403 (403)
T TIGR01347       401 LDL  403 (403)
T ss_pred             hcC
Confidence            875

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=7.9e-79  Score=645.59  Aligned_cols=385  Identities=31%  Similarity=0.450  Sum_probs=310.8

Q ss_pred             cccccccccCCC--CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC
Q 036766           84 MYLWSHPFSSEG--GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE  161 (470)
Q Consensus        84 ~~~~~r~~~~~~--~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~  161 (470)
                      +..+.|+|++..  +.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++++++++|+|.+|++++|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~  175 (539)
T PLN02744         96 QMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGA  175 (539)
T ss_pred             cccccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCC
Confidence            344678999855  456999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             -ccCCCCeEEEEeeCCCCCC------C-C--CCC---C-CCCC--CCC--CCC-CCcc----c---cc-C---CCCCCcc
Q 036766          162 -TVEPGTKIAVISKSGEGVA------H-V--APS---E-KIPE--KAA--PKP-PSAE----K---AK-E---DKPQPKV  211 (470)
Q Consensus       162 -~v~~G~~l~~i~~~~~~~~------~-~--~~~---~-~~~~--~~a--~~~-~~~~----~---~~-~---~~~~~~~  211 (470)
                       .|++|++|+++.+++++..      . .  ++.   + ..++  ...  ..+ +.++    .   +. .   ....|.+
T Consensus       176 ~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~a  255 (539)
T PLN02744        176 KEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLA  255 (539)
T ss_pred             cccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchh
Confidence             7999999999854333210      0 0  000   0 0000  000  000 0000    0   00 0   0112333


Q ss_pred             ccccC------------CC-------CCC---CCCCCCCCCCCCC--CCCCCccceeechhhHHHHHHHHHhcccCcceE
Q 036766          212 ETVSE------------KP-------KAP---SPPPPKRTATEPQ--LPPKERERRVPMTRLRKRVATRLKDSQNTFAML  267 (470)
Q Consensus       212 ~~~~~------------~~-------~~~---a~~~~~~~~~~~~--~~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~  267 (470)
                      +....            .+       ++.   +........+.+.  .++...++++||++|||.||++|.+|++++|||
T Consensus       256 RrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~  335 (539)
T PLN02744        256 RKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHY  335 (539)
T ss_pred             HHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeE
Confidence            22100            00       000   0000000000000  011112356899999999999999999999999


Q ss_pred             EEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEE
Q 036766          268 TTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVP  347 (470)
Q Consensus       268 ~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vp  347 (470)
                      |++.++|+|+|+++|+++++.+.+..|.|+||++||+||++.||++||+||+.|+++.|++++++|||+||++++||++|
T Consensus       336 t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vP  415 (539)
T PLN02744        336 YLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVP  415 (539)
T ss_pred             EEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEEC
Confidence            99999999999999999987655556899999999999999999999999999999899999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCC-CCCCCCcccccCCCceeEEEEecceeEEEE--eC
Q 036766          348 VIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGG-VYGSLLSTPIINPPQSAILGMHSIVQRPMV--VG  424 (470)
Q Consensus       348 vI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG-~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv--~~  424 (470)
                      ||+|++++++.||++++++|+++||+|+|+++||+||||||||+| +||+.+|+|||||||+|||++|++.++|++  .+
T Consensus       416 VIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~  495 (539)
T PLN02744        416 VVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGP  495 (539)
T ss_pred             cCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccC
Confidence            999999999999999999999999999999999999999999998 899999999999999999999999999998  48


Q ss_pred             CeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          425 GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       425 G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      |++++|++|+|||+||||+|||+++|+||++|+++||||+.|||
T Consensus       496 g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll  539 (539)
T PLN02744        496 DQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL  539 (539)
T ss_pred             CeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence            99999999999999999999999999999999999999998875

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=3e-77  Score=620.44  Aligned_cols=372  Identities=46%  Similarity=0.755  Sum_probs=307.9

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +.++|+||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++|++|++|++|++|+.++
T Consensus         1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~   80 (404)
T COG0508           1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG   80 (404)
T ss_pred             CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCC--CCCCCCCC--CCCCCCcccccCCCCCCcccc---------------ccC----CCCC---CCC--CCCCC
Q 036766          177 EGVAHVAP--SEKIPEKA--APKPPSAEKAKEDKPQPKVET---------------VSE----KPKA---PSP--PPPKR  228 (470)
Q Consensus       177 ~~~~~~~~--~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~---------------~~~----~~~~---~a~--~~~~~  228 (470)
                      ++....+.  .+.....+  ++.+....+.......|.+++               .+.    ....   ...  ..+..
T Consensus        81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~~~~  160 (404)
T COG0508          81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAA  160 (404)
T ss_pred             CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccccccc
Confidence            64211110  00000000  000000000000011111111               000    0000   000  00000


Q ss_pred             C-CCCCCC-CCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHH
Q 036766          229 T-ATEPQL-PPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKA  306 (470)
Q Consensus       229 ~-~~~~~~-~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA  306 (470)
                      . ...+.. .....++++||+++||.|+++|..|++++||++.+.++|++.|+++|++++..+.++ |.|+||++|++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA  239 (404)
T COG0508         161 PAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKA  239 (404)
T ss_pred             cccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccHHHHHHHH
Confidence            0 000000 123457789999999999999999999999999999999999999999999887655 9999999999999


Q ss_pred             HHHHHhhCCccceEEeCC--eEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCC
Q 036766          307 AVSGLQNQPIINAVIDGD--DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGG  384 (470)
Q Consensus       307 ~a~Al~~~P~lN~~i~~~--~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~gg  384 (470)
                      ++.||++||.+|++++++  .+++++++|||+||++++||++|||++++++++.+|++++.+|..++|+|+|+++||+||
T Consensus       240 ~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~gg  319 (404)
T COG0508         240 VVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGG  319 (404)
T ss_pred             HHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCc
Confidence            999999999999888875  799999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHh
Q 036766          385 SFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPR  464 (470)
Q Consensus       385 tftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~  464 (470)
                      ||||||+|++|...|+||||+||++|||+|++.++|+|.+|++.+|++|+|+|+||||++||+++++||.+++++||||.
T Consensus       320 tftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p~  399 (404)
T COG0508         320 TFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPE  399 (404)
T ss_pred             eEEeecCCccccceecccccChhHheeeccccccCceEecCceeeEeeEeecccccccccccHHHHHHHHHHHHHhcChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcc
Q 036766          465 RLLLD  469 (470)
Q Consensus       465 ~lll~  469 (470)
                      .||++
T Consensus       400 ~ll~~  404 (404)
T COG0508         400 RLLLE  404 (404)
T ss_pred             hhhcC
Confidence            99874

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=1.1e-75  Score=611.29  Aligned_cols=368  Identities=22%  Similarity=0.424  Sum_probs=297.7

Q ss_pred             EEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCCCCC
Q 036766          101 AVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA  180 (470)
Q Consensus       101 v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~~~~  180 (470)
                      |+||+||++|+||+|++|+|++||.|++||+|+++||||+.++++++.+|+|.++++++|+.|++|++|+.|+.++++..
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~   80 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL   80 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999975543211


Q ss_pred             C-CCCCCCC--CCCCCCCCCCccccc--CCCCCCccccc---------------cC-----------CCCCC--CCCCCC
Q 036766          181 H-VAPSEKI--PEKAAPKPPSAEKAK--EDKPQPKVETV---------------SE-----------KPKAP--SPPPPK  227 (470)
Q Consensus       181 ~-~~~~~~~--~~~~a~~~~~~~~~~--~~~~~~~~~~~---------------~~-----------~~~~~--a~~~~~  227 (470)
                      . .++.+..  ....++.++......  .....|.+++.               +.           .....  .++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~  160 (416)
T PLN02528         81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSA  160 (416)
T ss_pred             cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccccc
Confidence            0 0000000  000000000000000  00112322210               00           00000  000000


Q ss_pred             ---CCCCC------CCCCCCC--ccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCcc
Q 036766          228 ---RTATE------PQLPPKE--RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVK  296 (470)
Q Consensus       228 ---~~~~~------~~~~~~~--~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k  296 (470)
                         ..+..      +..+...  .++.+||+++||+||++|++|+ ++||||++.++|+|+|+++|+++++.. +..|.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~-~~~g~k  238 (416)
T PLN02528        161 EEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENN-TDPTVK  238 (416)
T ss_pred             ccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhh-hhcCCc
Confidence               00000      0000001  2456899999999999999997 999999999999999999999998643 345899


Q ss_pred             ccHHHHHHHHHHHHHhhCCccceEEeCC--eEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 036766          297 LGLMSGFVKAAVSGLQNQPIINAVIDGD--DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDG  374 (470)
Q Consensus       297 ~s~~~~lvkA~a~Al~~~P~lN~~i~~~--~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g  374 (470)
                      +||++||+||+++||++||+||++|+++  ++++++++||||||++++||++|||++++++++.||++++++|++++|+|
T Consensus       239 ls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~g  318 (416)
T PLN02528        239 HTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAEN  318 (416)
T ss_pred             ccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999864  79999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEe-CCeEeEEcEEEEEEEecccccChHHHHHHH
Q 036766          375 SISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFL  453 (470)
Q Consensus       375 ~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~-~G~i~~r~~m~lsls~DHRviDG~~aa~Fl  453 (470)
                      +|+++|++||||||||+|++|+.+|+|||||||+||||+|++.++|++. +|++.+|++|+|||+||||+|||+++|+||
T Consensus       319 kL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl  398 (416)
T PLN02528        319 KLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFC  398 (416)
T ss_pred             CCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986 589999999999999999999999999999


Q ss_pred             HHHHHHhhCHhhhhccC
Q 036766          454 RRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       454 ~~l~~~Le~P~~lll~~  470 (470)
                      ++|+++||||+.||+++
T Consensus       399 ~~lk~~le~P~~lll~~  415 (416)
T PLN02528        399 NEWKSYVEKPELLMLHM  415 (416)
T ss_pred             HHHHHHHhCHHHHHhcc
Confidence            99999999999999874

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=1.2e-75  Score=634.42  Aligned_cols=370  Identities=39%  Similarity=0.630  Sum_probs=298.4

Q ss_pred             CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        96 ~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ++.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|++|+.+
T Consensus       133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~  212 (590)
T TIGR02927       133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA  212 (590)
T ss_pred             CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence            44579999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             CCCCCC-----CCC-C------CCCCC-CCC----CCC--------CC---cccc---c-C---CCCCCcccccc-----
Q 036766          176 GEGVAH-----VAP-S------EKIPE-KAA----PKP--------PS---AEKA---K-E---DKPQPKVETVS-----  215 (470)
Q Consensus       176 ~~~~~~-----~~~-~------~~~~~-~~a----~~~--------~~---~~~~---~-~---~~~~~~~~~~~-----  215 (470)
                      +++...     ... .      ...+. ...    ..+        ..   +...   . .   ....|.+++..     
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv  292 (590)
T TIGR02927       213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI  292 (590)
T ss_pred             CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence            432110     000 0      00000 000    000        00   0000   0 0   01123332200     


Q ss_pred             ----------C-----------CCCC--C-CCCCC----CCCCC--CCCC--CC---CCccceeechhhHHHHHHHHHhc
Q 036766          216 ----------E-----------KPKA--P-SPPPP----KRTAT--EPQL--PP---KERERRVPMTRLRKRVATRLKDS  260 (470)
Q Consensus       216 ----------~-----------~~~~--~-a~~~~----~~~~~--~~~~--~~---~~~~~~~pls~~Rk~ia~~m~~S  260 (470)
                                .           ....  . ..+.+    ....+  .+..  .+   ...++.+||++|||.||++|++|
T Consensus       293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S  372 (590)
T TIGR02927       293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA  372 (590)
T ss_pred             CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence                      0           0000  0 00000    00000  0000  00   01245689999999999999999


Q ss_pred             ccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeC--CeEEEeecccEEEEE
Q 036766          261 QNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG--DDIIYRDYIDISIAV  338 (470)
Q Consensus       261 ~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~--~~i~~~~~i~igiAV  338 (470)
                      ++++||||++.++|||+|+++|+++|+.+.+++|.|+||++||+||++.||++||.||++|++  ++|++|+++||||||
T Consensus       373 ~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv  452 (590)
T TIGR02927       373 LQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAV  452 (590)
T ss_pred             hccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEE
Confidence            999999999999999999999999997665666899999999999999999999999999974  479999999999999


Q ss_pred             ecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEeccee
Q 036766          339 GTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ  418 (470)
Q Consensus       339 ~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~  418 (470)
                      ++++||++|||+|+++++|.+|++++++|++++|+|+|+++||+||||||||+|+||+++|+||||+||+||||+|++++
T Consensus       453 ~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~  532 (590)
T TIGR02927       453 DTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVK  532 (590)
T ss_pred             ECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeC---C--eEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhh
Q 036766          419 RPMVVG---G--NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRR  465 (470)
Q Consensus       419 ~Pvv~~---G--~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~  465 (470)
                      +|++.+   |  .+.+|++|+|||+||||+|||+++|+||++|+++||||..
T Consensus       533 ~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~  584 (590)
T TIGR02927       533 RPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF  584 (590)
T ss_pred             EEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence            999862   3  4999999999999999999999999999999999999874

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=3.6e-75  Score=610.46  Aligned_cols=366  Identities=33%  Similarity=0.497  Sum_probs=297.8

Q ss_pred             EEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCc-cCCCCeEEEEeeCCCCC
Q 036766          101 AVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET-VEPGTKIAVISKSGEGV  179 (470)
Q Consensus       101 v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~-v~~G~~l~~i~~~~~~~  179 (470)
                      |+||++|++|+||+|++|+|++||.|++||+||+|||||++++++||++|+|.++++++|+. |++|++|++|+..+++.
T Consensus         2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~   81 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV   81 (435)
T ss_pred             cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence            78999999999999999999999999999999999999999999999999999999999999 99999999997543321


Q ss_pred             C-C--------C--CCCC--CCCC-C---CCC--CC--C--Ccc--cc---cC----CCCCCccccccC-----------
Q 036766          180 A-H--------V--APSE--KIPE-K---AAP--KP--P--SAE--KA---KE----DKPQPKVETVSE-----------  216 (470)
Q Consensus       180 ~-~--------~--~~~~--~~~~-~---~a~--~~--~--~~~--~~---~~----~~~~~~~~~~~~-----------  216 (470)
                      . .        .  ++..  ..+. .   +.+  .+  .  .+.  ..   ..    ....|.+++...           
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g  161 (435)
T TIGR01349        82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG  161 (435)
T ss_pred             ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence            1 0        0  0000  0000 0   000  00  0  000  00   00    011233322000           


Q ss_pred             -CC-------CC----CC----CCCCCCCC--CC-C-CCC-CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeec
Q 036766          217 -KP-------KA----PS----PPPPKRTA--TE-P-QLP-PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDM  275 (470)
Q Consensus       217 -~~-------~~----~a----~~~~~~~~--~~-~-~~~-~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDv  275 (470)
                       .+       +.    ..    ++.+...+  .. + ..+ ....++.+||++|||.|+++|++|++++||||++.++|+
T Consensus       162 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~  241 (435)
T TIGR01349       162 SGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNV  241 (435)
T ss_pred             CCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEh
Confidence             00       00    00    00000000  00 0 000 011235689999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCC
Q 036766          276 TNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKM  355 (470)
Q Consensus       276 t~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~  355 (470)
                      |+|+++|+++++.+.+  |.++||++||+||+++||++||.||++|++++|++++++||||||++++||++|||++++++
T Consensus       242 t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~  319 (435)
T TIGR01349       242 DKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADAK  319 (435)
T ss_pred             HHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCCCcccC
Confidence            9999999999865432  78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCe---EeEEcE
Q 036766          356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGN---VVPRPM  432 (470)
Q Consensus       356 sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~---i~~r~~  432 (470)
                      |+.||++++++|++++|+|+|+++||+||||||||+|++|+.+|+|||||||+||||+|++.++|++.+|+   +++|++
T Consensus       320 sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~~  399 (435)
T TIGR01349       320 GLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASI  399 (435)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998877   999999


Q ss_pred             EEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          433 MYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      |+|||+||||+|||++||+||++|+++||||+.||+
T Consensus       400 m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll  435 (435)
T TIGR01349       400 MSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL  435 (435)
T ss_pred             EEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999999999999998875

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=6.2e-75  Score=624.46  Aligned_cols=369  Identities=33%  Similarity=0.535  Sum_probs=300.2

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      .++|+||+||+ |+||+|++|+|++||.|++||+|++|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+++
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~  194 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS  194 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            47999999999 99999999999999999999999999999999999999999999999999999999999999976543


Q ss_pred             CCCCC-CC--C---CCCCCC--C----CCCCCCccccc-----C-----C-CCCCcccccc-----------CC-C----
Q 036766          178 GVAHV-AP--S---EKIPEK--A----APKPPSAEKAK-----E-----D-KPQPKVETVS-----------EK-P----  218 (470)
Q Consensus       178 ~~~~~-~~--~---~~~~~~--~----a~~~~~~~~~~-----~-----~-~~~~~~~~~~-----------~~-~----  218 (470)
                      +.... .+  +   ...+..  +    ++.+.....+.     .     . ...|.++...           .. +    
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI  274 (546)
T TIGR01348       195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI  274 (546)
T ss_pred             CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence            21100 00  0   000000  0    00000000000     0     0 1123222100           00 0    


Q ss_pred             ----------CCCC-CCCCCCCCCCC-----CCC-----CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechH
Q 036766          219 ----------KAPS-PPPPKRTATEP-----QLP-----PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTN  277 (470)
Q Consensus       219 ----------~~~a-~~~~~~~~~~~-----~~~-----~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~  277 (470)
                                ...+ .+.....+..+     ..+     ....++.+||++|||.||++|++|++++||||++.++|+|+
T Consensus       275 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~  354 (546)
T TIGR01348       275 LREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE  354 (546)
T ss_pred             eHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHH
Confidence                      0000 00000000000     000     00123568999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCC
Q 036766          278 LMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKM  355 (470)
Q Consensus       278 L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~  355 (470)
                      |+++|+++++.+.+ .|.|+||++||+||+++||++||.||++|++  ++|++++++||||||++++||++|||++++++
T Consensus       355 l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~  433 (546)
T TIGR01348       355 MEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRK  433 (546)
T ss_pred             HHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccC
Confidence            99999999876543 5889999999999999999999999999984  57999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEE
Q 036766          356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYI  435 (470)
Q Consensus       356 sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~l  435 (470)
                      |+.+|++++++|++++|+|+|+++||+||||||||+|++|+++|+|||||||++||++|++.++|++.+|++++|++|+|
T Consensus       434 sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~l  513 (546)
T TIGR01348       434 GITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPL  513 (546)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          436 ALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       436 sls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      ||+||||+|||+++++||++|+++||||+.||+
T Consensus       514 tls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~  546 (546)
T TIGR01348       514 SLSYDHRVIDGADAARFTTYICESLADIRRLLL  546 (546)
T ss_pred             eEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999999999998875

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=6.3e-72  Score=611.26  Aligned_cols=371  Identities=30%  Similarity=0.516  Sum_probs=299.7

Q ss_pred             CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        96 ~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      .+.++|+||+||  |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+
T Consensus       204 ~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~  281 (633)
T PRK11854        204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE  281 (633)
T ss_pred             CCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence            456899999999  999999999999999999999999999999999999999999999999999999999999999764


Q ss_pred             CCCCCCCC-C---CCCCCC--C-CCCCC-CC-cc-c----ccC---CCCCCccccccC------------C---------
Q 036766          176 GEGVAHVA-P---SEKIPE--K-AAPKP-PS-AE-K----AKE---DKPQPKVETVSE------------K---------  217 (470)
Q Consensus       176 ~~~~~~~~-~---~~~~~~--~-~a~~~-~~-~~-~----~~~---~~~~~~~~~~~~------------~---------  217 (470)
                      +++..... +   ....+.  . +.+.+ +. .. .    ...   ....|.+++...            .         
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D  361 (633)
T PRK11854        282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKED  361 (633)
T ss_pred             CCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHH
Confidence            43211000 0   000000  0 00000 00 00 0    000   011233332000            0         


Q ss_pred             -----CC----CCCCCCCCCCC-CC------CCCC--CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHH
Q 036766          218 -----PK----APSPPPPKRTA-TE------PQLP--PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLM  279 (470)
Q Consensus       218 -----~~----~~a~~~~~~~~-~~------~~~~--~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~  279 (470)
                           ..    ..+++.+.... +.      +..+  ....++.+||++|||.||++|.+|++++|||+++.++|+|+|+
T Consensus       362 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~  441 (633)
T PRK11854        362 VQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE  441 (633)
T ss_pred             HHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHH
Confidence                 00    00001000000 00      0000  0112356899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-hhcCccccHHHHHHHHHHHHHhhCCccceEEe--CCeEEEeecccEEEEEecCCCeEEEEEEeCCCCC
Q 036766          280 KLRSEYKDAFL-EKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--GDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMN  356 (470)
Q Consensus       280 ~~rk~~~~~~~-~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~--~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~s  356 (470)
                      ++|+++++... ++.|.++||++||+||+++||++||+||++|+  ++++++++++|||+||++++||++|||+++++++
T Consensus       442 ~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~s  521 (633)
T PRK11854        442 AFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKG  521 (633)
T ss_pred             HHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCC
Confidence            99998875332 24589999999999999999999999999996  4689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEE
Q 036766          357 FADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIA  436 (470)
Q Consensus       357 l~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~ls  436 (470)
                      |.+|+++++++++++++|+|.++|++||||||||+||+|+++|+|||||||+|||++|++.++|++.+|.+..|++|+||
T Consensus       522 l~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~ls  601 (633)
T PRK11854        522 IIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLS  601 (633)
T ss_pred             HHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             EEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          437 LTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       437 ls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      |+||||+|||+++|+||++|+++||+|..|||
T Consensus       602 lt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~  633 (633)
T PRK11854        602 LSYDHRVIDGADGARFITIINDRLSDIRRLVL  633 (633)
T ss_pred             EEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence            99999999999999999999999999998875

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=3.1e-70  Score=572.39  Aligned_cols=368  Identities=39%  Similarity=0.669  Sum_probs=300.4

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      |..+++||++|++|++|+|++|+|++||.|++||+|++|||||+.++++||++|+|.++++++|+.|++|++|+.|...+
T Consensus         1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~   80 (411)
T PRK11856          1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG   80 (411)
T ss_pred             CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999998655


Q ss_pred             C-CCCCCC---CCCCCC-CCCCCC---CCCccc---c-cCC----CCCCccccccC------------CC-------CC-
Q 036766          177 E-GVAHVA---PSEKIP-EKAAPK---PPSAEK---A-KED----KPQPKVETVSE------------KP-------KA-  220 (470)
Q Consensus       177 ~-~~~~~~---~~~~~~-~~~a~~---~~~~~~---~-~~~----~~~~~~~~~~~------------~~-------~~-  220 (470)
                      + +.+...   ..+... +..+..   ...+..   . ...    ...|.+++...            .+       +. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~  160 (411)
T PRK11856         81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVE  160 (411)
T ss_pred             CCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHH
Confidence            4 211110   000000 000000   000000   0 000    11233322000            00       00 


Q ss_pred             ------CCCCCCCCCCCCCCC-CCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhc
Q 036766          221 ------PSPPPPKRTATEPQL-PPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKH  293 (470)
Q Consensus       221 ------~a~~~~~~~~~~~~~-~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~  293 (470)
                            ..++.+....+.... .....++.+||+++||.||++|.+|++++|||+++.++|+|+|+++|+++++.     
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~~-----  235 (411)
T PRK11856        161 AAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI-----  235 (411)
T ss_pred             HHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHhh-----
Confidence                  000000000000000 00123567899999999999999999999999999999999999999998642     


Q ss_pred             CccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 036766          294 GVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKAND  373 (470)
Q Consensus       294 g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~  373 (470)
                      +.++||+++|+||+++||++||+||++|+++++++|++||+|+||++++||++|||+++++++|.+|+++++++++++++
T Consensus       236 ~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~  315 (411)
T PRK11856        236 GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKARE  315 (411)
T ss_pred             ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHc
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHH
Q 036766          374 GSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFL  453 (470)
Q Consensus       374 g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl  453 (470)
                      |+|.++|+.+|||||||+||+|..+++|+||+||++||++|++.++|++.+|++++|.+|||||+||||+|||+|+++||
T Consensus       316 ~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG~~aa~Fl  395 (411)
T PRK11856        316 GKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFL  395 (411)
T ss_pred             CCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCHhhhhcc
Q 036766          454 RRIKDVVEEPRRLLLD  469 (470)
Q Consensus       454 ~~l~~~Le~P~~lll~  469 (470)
                      ++|+++||+|+.||++
T Consensus       396 ~~l~~~le~p~~ll~~  411 (411)
T PRK11856        396 KALKELLENPALLLLE  411 (411)
T ss_pred             HHHHHHHhCHHHHhcC
Confidence            9999999999999874

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=2.2e-70  Score=591.19  Aligned_cols=371  Identities=38%  Similarity=0.595  Sum_probs=300.0

Q ss_pred             CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        96 ~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ....+|+||+||+ |+||+|++|+|++||.|++||.|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...
T Consensus       117 ~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~  195 (547)
T PRK11855        117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA  195 (547)
T ss_pred             CCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence            3458999999999 999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CCCC-CC--CCCCCC----CC-CCCCCCC----CCc--cccc-C--C-CCCCcccccc---------------C------
Q 036766          176 GEGV-AH--VAPSEK----IP-EKAAPKP----PSA--EKAK-E--D-KPQPKVETVS---------------E------  216 (470)
Q Consensus       176 ~~~~-~~--~~~~~~----~~-~~~a~~~----~~~--~~~~-~--~-~~~~~~~~~~---------------~------  216 (470)
                      +++. ..  .++.+.    .+ ....+..    ...  .... .  . ...|.+++..               .      
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~  275 (547)
T PRK11855        196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKE  275 (547)
T ss_pred             CCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHH
Confidence            3221 00  000000    00 0000000    000  0000 0  0 1123333200               0      


Q ss_pred             -----CCCCC-CCCCCC----CCC-C-C---CCCC----CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechH
Q 036766          217 -----KPKAP-SPPPPK----RTA-T-E---PQLP----PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTN  277 (470)
Q Consensus       217 -----~~~~~-a~~~~~----~~~-~-~---~~~~----~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~  277 (470)
                           ..... +.+.+.    ..+ . .   +...    ....++.+||+++||.||++|++|++++|||+++.++|+|+
T Consensus       276 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~  355 (547)
T PRK11855        276 DVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD  355 (547)
T ss_pred             HHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChH
Confidence                 00000 000000    000 0 0   0000    00124568999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEe--CCeEEEeecccEEEEEecCCCeEEEEEEeCCCC
Q 036766          278 LMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--GDDIIYRDYIDISIAVGTSKGLVVPVIRNADKM  355 (470)
Q Consensus       278 L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~--~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~  355 (470)
                      |+++|+++++.+.+ .|.++||+++|+||+++||++||+||++|+  +++++++++||||+||++++||++|||+|++++
T Consensus       356 l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~  434 (547)
T PRK11855        356 LEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKK  434 (547)
T ss_pred             HHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccC
Confidence            99999999865543 489999999999999999999999999998  568999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEE
Q 036766          356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYI  435 (470)
Q Consensus       356 sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~l  435 (470)
                      ++.+|+++++++++++|+|+|.++|+.||||||||+||+|+++|+|+|||||+|||++|++.++|++.+|.+..|++|+|
T Consensus       435 sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~l  514 (547)
T PRK11855        435 SLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPL  514 (547)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999888889999999999


Q ss_pred             EEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          436 ALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       436 sls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      ||+||||+|||+|+++||++|+++||+|+.||+
T Consensus       515 slt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~  547 (547)
T PRK11855        515 SLSYDHRVIDGATAARFTNYLKQLLADPRRMLL  547 (547)
T ss_pred             eEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999999999999875

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=100.00  E-value=5.6e-71  Score=560.44  Aligned_cols=372  Identities=29%  Similarity=0.454  Sum_probs=304.2

Q ss_pred             CCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC-CccCCCCeEEEE
Q 036766           94 EGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG-ETVEPGTKIAVI  172 (470)
Q Consensus        94 ~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG-~~v~~G~~l~~i  172 (470)
                      .++.+..|.||.|+++|+||.|++|.++|||++.+||+||||||||++|+++++++|+|.||+++|| ..|++|.+||+|
T Consensus        34 ~~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaii  113 (470)
T KOG0557|consen   34 KLPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAII  113 (470)
T ss_pred             cCCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEE
Confidence            3688999999999999999999999999999999999999999999999999999999999999999 699999999999


Q ss_pred             eeCCCCCCCCCCCCC----C---CCC---CCCC------CC-CcccccCCCCC-----CccccccC--------------
Q 036766          173 SKSGEGVAHVAPSEK----I---PEK---AAPK------PP-SAEKAKEDKPQ-----PKVETVSE--------------  216 (470)
Q Consensus       173 ~~~~~~~~~~~~~~~----~---~~~---~a~~------~~-~~~~~~~~~~~-----~~~~~~~~--------------  216 (470)
                      .+.+++.+..+....    .   ++.   ++++      .+ +...+......     .++..+|.              
T Consensus       114 ve~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~  193 (470)
T KOG0557|consen  114 VEDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSS  193 (470)
T ss_pred             ecccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCcccc
Confidence            988775433211100    0   000   0000      00 00000000000     01111110              


Q ss_pred             ----------------------CCCCCCCCCCCCCCCCCC--CCCCCccceeechhhHHHHHHHHHhcccCcceEEEEee
Q 036766          217 ----------------------KPKAPSPPPPKRTATEPQ--LPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNE  272 (470)
Q Consensus       217 ----------------------~~~~~a~~~~~~~~~~~~--~~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~e  272 (470)
                                            +.+..+.+.+...+..+.  ..+...++.+|++.||+.|++||.+|++++||+|++.+
T Consensus       194 i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~  273 (470)
T KOG0557|consen  194 IPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVD  273 (470)
T ss_pred             CcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeee
Confidence                                  001111111100011111  11223478999999999999999999999999999999


Q ss_pred             eechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeC-CeEEEeecccEEEEEecCCCeEEEEEEe
Q 036766          273 VDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG-DDIIYRDYIDISIAVGTSKGLVVPVIRN  351 (470)
Q Consensus       273 vDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~-~~i~~~~~i~igiAV~~~~GL~vpvI~~  351 (470)
                      +++++|+++|+++|   -++.+.++|+++|++||.+.||.++|+.|++|.+ .-|.+++.|||++||.+++||++|+|+|
T Consensus       274 ~~~d~ll~~r~~ln---~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~n  350 (470)
T KOG0557|consen  274 VNLDKLLALREKLN---FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQN  350 (470)
T ss_pred             eehHHHHHHHHHhh---hcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhh
Confidence            99999999999998   2466889999999999999999999999999987 6788999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEE---eCCeEe
Q 036766          352 ADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMV---VGGNVV  428 (470)
Q Consensus       352 a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv---~~G~i~  428 (470)
                      ++.+.+.+|.+++.+|++++|+|+|.|++++||||+||||||||++.|+.||||||.+||++|......|.   .++++.
T Consensus       351 a~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~  430 (470)
T KOG0557|consen  351 ADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFS  430 (470)
T ss_pred             cccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999877663   245788


Q ss_pred             EEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          429 PRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       429 ~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      ....|+|||++|||++||+.+++||+.|++++|||..|||
T Consensus       431 ~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll  470 (470)
T KOG0557|consen  431 VINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL  470 (470)
T ss_pred             eeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence            9999999999999999999999999999999999999886

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=1.2e-66  Score=507.91  Aligned_cols=371  Identities=26%  Similarity=0.480  Sum_probs=303.2

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..+.|+|-++||++.|.++.+|+|||||+|++-|+||||++||++++|.+.++|+|++|+.+.+|...+|++|..++.++
T Consensus        63 gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~  142 (474)
T KOG0558|consen   63 GVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED  142 (474)
T ss_pred             ceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC-CcccccCCCCCCccccc-----------cC------------------CCCCCCCCCC
Q 036766          177 EGVAHVAPSEKIPEKAAPKPP-SAEKAKEDKPQPKVETV-----------SE------------------KPKAPSPPPP  226 (470)
Q Consensus       177 ~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-----------~~------------------~~~~~a~~~~  226 (470)
                      ..+... ...+.+....+..+ ..+........|.+++.           ++                  .+.....|.+
T Consensus       143 ~~ds~e-~s~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~  221 (474)
T KOG0558|consen  143 SQDSPE-DSDESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSP  221 (474)
T ss_pred             CcCCcc-cCCccccccCCCCchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCC
Confidence            422111 01000000000000 00000000011222210           00                  0000000000


Q ss_pred             C--C-----CCCCCCCCCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccH
Q 036766          227 K--R-----TATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL  299 (470)
Q Consensus       227 ~--~-----~~~~~~~~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~  299 (470)
                      .  .     ++.....+.-.....+|+.+.+|+|.+.|+.+ ..+|||.+.+|||||.|+++|++++.. ....|+|+||
T Consensus       222 ~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dEIn~~sLvklr~elk~~-a~e~~IKltf  299 (474)
T KOG0558|consen  222 SEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDEINCDSLVKLRQELKEN-AKERGIKLTF  299 (474)
T ss_pred             ceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCccccccccChHHHHHHHHHHhhh-hhhcCceeee
Confidence            0  0     00000111123467799999999999999999 669999999999999999999999764 3456899999


Q ss_pred             HHHHHHHHHHHHhhCCccceEEeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 036766          300 MSGFVKAAVSGLQNQPIINAVIDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSIS  377 (470)
Q Consensus       300 ~~~lvkA~a~Al~~~P~lN~~i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~  377 (470)
                      ++||+||++.||.+||.+|+.+|.  ..|++...+|||+|+++++||++|.|+|++.+|+.||++++++|.+..+.|+|+
T Consensus       300 mPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls  379 (474)
T KOG0558|consen  300 MPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLS  379 (474)
T ss_pred             hHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcC
Confidence            999999999999999999999986  579999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEe-CCeEeEEcEEEEEEEecccccChHHHHHHHHHH
Q 036766          378 IDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRI  456 (470)
Q Consensus       378 ~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~-~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l  456 (470)
                      ++|+.|||||+||+|.+|+++..|+|++||+||.++|+|.+.|.+. .|++....+|.++|++||||+||+..|||-+.+
T Consensus       380 ~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~W  459 (474)
T KOG0558|consen  380 PEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQW  459 (474)
T ss_pred             hhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999996 688999999999999999999999999999999


Q ss_pred             HHHhhCHhhhhccC
Q 036766          457 KDVVEEPRRLLLDI  470 (470)
Q Consensus       457 ~~~Le~P~~lll~~  470 (470)
                      ++|||||+.|||++
T Consensus       460 K~YlE~Pa~mll~l  473 (474)
T KOG0558|consen  460 KEYLENPALMLLQL  473 (474)
T ss_pred             HHHhhCHHHHhhcc
Confidence            99999999999875

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=4.5e-62  Score=472.78  Aligned_cols=229  Identities=47%  Similarity=0.760  Sum_probs=205.0

Q ss_pred             CccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccc
Q 036766          239 ERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIIN  318 (470)
Q Consensus       239 ~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN  318 (470)
                      ++++++|++++||+||++|++|++++||+|++.+||+|+|+++|+++++...+ .+.++|+++|++||+++||++||+||
T Consensus         2 ~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~-~~~kis~~~~likAva~AL~~~P~lN   80 (231)
T PF00198_consen    2 GEETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEE-PGGKISITDFLIKAVALALKEHPELN   80 (231)
T ss_dssp             SSCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHHSGGGS
T ss_pred             CCcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHh-hccCCChhHeeeehHhhhhHHHHHhc
Confidence            35688999999999999999999999999999999999999999999876543 34599999999999999999999999


Q ss_pred             eEEeCCe-EEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766          319 AVIDGDD-IIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL  397 (470)
Q Consensus       319 ~~i~~~~-i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~  397 (470)
                      ++|+++. |++++++|||+||++++||++|||+|++++|+.||+++++++++++++|+|+++|++||||||||+|++|++
T Consensus        81 a~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~  160 (231)
T PF00198_consen   81 ASWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVE  160 (231)
T ss_dssp             EEEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-S
T ss_pred             cccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcc
Confidence            9999877 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      +|+|||||||+|||++|+++++|++.+|+++.+++|++||+||||++||++|++||++|+++||+|+.|||
T Consensus       161 ~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll  231 (231)
T PF00198_consen  161 SFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL  231 (231)
T ss_dssp             CEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred             eeEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=3.4e-61  Score=490.50  Aligned_cols=228  Identities=36%  Similarity=0.629  Sum_probs=219.9

Q ss_pred             cceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceE
Q 036766          241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAV  320 (470)
Q Consensus       241 ~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~  320 (470)
                      ++.+||++|||.||++|.+|++++||||++.|+|+|+|+++|+++++.+.++.|.++||++||+||++.||++||.||++
T Consensus       118 ~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~  197 (347)
T PRK14843        118 IERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINAS  197 (347)
T ss_pred             ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEE
Confidence            45689999999999999999999999999999999999999999987666666899999999999999999999999999


Q ss_pred             EeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCC
Q 036766          321 IDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLL  398 (470)
Q Consensus       321 i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~  398 (470)
                      |++  +++++++++|||+||++++||++|||+|++++++.||++++++|++++|+|+|+++||+||||||||+|++|+++
T Consensus       198 ~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~  277 (347)
T PRK14843        198 LTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQS  277 (347)
T ss_pred             EecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccc
Confidence            984  569999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          399 STPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       399 ~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      |+|||||||+||||+|++.++|++.+|++++|++|+|||+||||+|||+++|+||++|+++||+|+.||+
T Consensus       278 ~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~  347 (347)
T PRK14843        278 FGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI  347 (347)
T ss_pred             eeccccCCceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998764

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=1.9e-60  Score=477.47  Aligned_cols=228  Identities=39%  Similarity=0.628  Sum_probs=219.7

Q ss_pred             cceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceE
Q 036766          241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAV  320 (470)
Q Consensus       241 ~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~  320 (470)
                      ++.+||++||+.||++|.+|++++|||+++.|||+|+|+++|+++++.+.+++|.|+||++||+||+++||++||.+|++
T Consensus        76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~  155 (306)
T PRK11857         76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK  155 (306)
T ss_pred             ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence            35689999999999999999999999999999999999999999998766667999999999999999999999999999


Q ss_pred             EeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCC
Q 036766          321 IDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLL  398 (470)
Q Consensus       321 i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~  398 (470)
                      |++  ++++++++||||+||++++||++|||++++++|+.||++++++|++++|+|+|+++|++||||||||+|++|+.+
T Consensus       156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~  235 (306)
T PRK11857        156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY  235 (306)
T ss_pred             EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence            984  479999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          399 STPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       399 ~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      |+|||||||+||||+|++.++|++.+|+++.|++|+|||+||||+|||+++|+||++|+++||+|+.|++
T Consensus       236 ~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~  305 (306)
T PRK11857        236 GVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV  305 (306)
T ss_pred             eecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999997654

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=2.5e-50  Score=436.56  Aligned_cols=220  Identities=24%  Similarity=0.390  Sum_probs=210.5

Q ss_pred             cceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceE
Q 036766          241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAV  320 (470)
Q Consensus       241 ~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~  320 (470)
                      .+.+||++++++||++|..|+. +|+++...+||++.|+++|+.+|+.+.++.|.|+||+++|+||+++||++||.+|++
T Consensus       115 ~~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas  193 (1228)
T PRK12270        115 DEVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH  193 (1228)
T ss_pred             cceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence            4678999999999999999965 999999999999999999999999998899999999999999999999999999999


Q ss_pred             Ee--CCe--EEEeecccEEEEEecC-----CCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeC
Q 036766          321 ID--GDD--IIYRDYIDISIAVGTS-----KGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNG  391 (470)
Q Consensus       321 i~--~~~--i~~~~~i~igiAV~~~-----~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnl  391 (470)
                      ++  +++  ++++++||||+||+++     +||+||+|+++++|+|.||.+++.++++|||+|+|+++|++||||||||+
T Consensus       194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~  273 (1228)
T PRK12270        194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP  273 (1228)
T ss_pred             eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence            97  444  9999999999999998     58999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccCCCceeEEEEecceeEEEEeC------CeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhh
Q 036766          392 GVYGSLLSTPIINPPQSAILGMHSIVQRPMVVG------GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVE  461 (470)
Q Consensus       392 G~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~------G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le  461 (470)
                      |++|+.+|+||||+||+||||+|++...|++.+      +++.++++|+||+|||||+|||+++++||++|+++||
T Consensus       274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe  349 (1228)
T PRK12270        274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL  349 (1228)
T ss_pred             CcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence            999999999999999999999999998888743      5899999999999999999999999999999999998

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=99.94  E-value=4.1e-25  Score=211.85  Aligned_cols=180  Identities=11%  Similarity=0.131  Sum_probs=157.3

Q ss_pred             ceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCe
Q 036766          265 AMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGL  344 (470)
Q Consensus       265 P~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL  344 (470)
                      |.|+++.+||||+|+++.|+.          +++|++.+++|+++|+|++|+||.++.+++++++|.||++++|..+++.
T Consensus        31 ~~fsiT~~iDiT~l~~~~K~~----------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~  100 (219)
T PRK13757         31 CTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE  100 (219)
T ss_pred             CceEEEEEEEHHHHHHHHHHc----------CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCc
Confidence            559999999999999887765          7899999999999999999999999999999999999999999987765


Q ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHHHhcC-CCCCCcCCCCeEEEEeCCCCCCCCcccccC-CC--ceeEEEEecceeEE
Q 036766          345 VVPVIRNADKMNFADIEKEINTLAKKANDG-SISIDEMAGGSFTISNGGVYGSLLSTPIIN-PP--QSAILGMHSIVQRP  420 (470)
Q Consensus       345 ~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g-~l~~~d~~ggtftISnlG~~G~~~~tpii~-~p--~~aIl~vG~i~~~P  420 (470)
                      .+..++-.+..++.+|.+...+.++++++. .+.++......|.||+++|+..+.++.-++ ..  ...++++|++.++ 
T Consensus       101 tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~~-  179 (219)
T PRK13757        101 TFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ-  179 (219)
T ss_pred             eEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEEE-
Confidence            666899999999999999999999999886 455555566899999999999888754444 33  4478999998765 


Q ss_pred             EEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766          421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEE  462 (470)
Q Consensus       421 vv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~  462 (470)
                         +|    |.+||||++++|.++||+|+++|++.|++.|++
T Consensus       180 ---~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~  214 (219)
T PRK13757        180 ---GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE  214 (219)
T ss_pred             ---CC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence               55    678999999999999999999999999999976

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=99.93  E-value=1.1e-24  Score=207.66  Aligned_cols=178  Identities=16%  Similarity=0.173  Sum_probs=140.0

Q ss_pred             cCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCC-eEEEeecccEEEEEec
Q 036766          262 NTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGD-DIIYRDYIDISIAVGT  340 (470)
Q Consensus       262 ~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~-~i~~~~~i~igiAV~~  340 (470)
                      ..-|+|+++.+||||+|+++.|+.          +++|++++++++++|+|++|+||.+++++ +++++|.|+++++|..
T Consensus        23 ~~~p~~svT~~lDvT~l~~~~K~~----------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~   92 (206)
T PF00302_consen   23 FDNPYFSVTVNLDVTNLYKYAKEK----------GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH   92 (206)
T ss_dssp             TSBEEEEEEEEEE-HHHHHHHHHT----------T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred             CCCceEecceeEEhHHHHHHHHHc----------CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence            346999999999999999988764          78999999999999999999999999987 9999999999999997


Q ss_pred             CCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC-CCCCCc-CCCCeEEEEeCCCCCCCCcccccC-CC--ceeEEEEec
Q 036766          341 SKGLVVPVIRNADKMNFADIEKEINTLAKKANDG-SISIDE-MAGGSFTISNGGVYGSLLSTPIIN-PP--QSAILGMHS  415 (470)
Q Consensus       341 ~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g-~l~~~d-~~ggtftISnlG~~G~~~~tpii~-~p--~~aIl~vG~  415 (470)
                      +++..+..++-.+..++.+|.+...+.++++++. .+.+++ .....|.+|+++|+..+.++.-++ .+  ...++.+|+
T Consensus        93 ~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK  172 (206)
T PF00302_consen   93 KDDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGK  172 (206)
T ss_dssp             TTTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE-
T ss_pred             CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeee
Confidence            6543556788888999999999999999998774 455543 455789999999999998755433 33  368899999


Q ss_pred             ceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHH
Q 036766          416 IVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIK  457 (470)
Q Consensus       416 i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~  457 (470)
                      +.++    +|    |.+||||++++|.++||+|+++|+++||
T Consensus       173 ~~~~----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ  206 (206)
T PF00302_consen  173 YFEE----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ  206 (206)
T ss_dssp             -EEE----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred             eEeE----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence            9875    66    6689999999999999999999999986

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=99.84  E-value=1.4e-19  Score=167.28  Aligned_cols=187  Identities=11%  Similarity=0.104  Sum_probs=157.1

Q ss_pred             cCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecC
Q 036766          262 NTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTS  341 (470)
Q Consensus       262 ~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~  341 (470)
                      ...||+.++.++|+|.+..+.|++          +++|+..+++|+.+++++|++||.++.+|+.+++|.+++.++|..+
T Consensus        26 ~~~p~y~i~~~LDvtn~~~~vk~~----------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~   95 (219)
T COG4845          26 LQYPHYDINLQLDVTNFYGYVKEN----------GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHG   95 (219)
T ss_pred             cccceEeeeeeeehhHHHHHHHHc----------CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcC
Confidence            357999999999999999888765          7899999999999999999999999999999999999999999998


Q ss_pred             CCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCC-CCCCcCC-CCeEEEEeCCCCCCCCcccccCC---CceeEEEEecc
Q 036766          342 KGLVVPVIRNADKMNFADIEKEINTLAKKANDGS-ISIDEMA-GGSFTISNGGVYGSLLSTPIINP---PQSAILGMHSI  416 (470)
Q Consensus       342 ~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~-l~~~d~~-ggtftISnlG~~G~~~~tpii~~---p~~aIl~vG~i  416 (470)
                      ++..+.+++-....++.+|++.....+++++++. +.++|-. .....+||++|+..+.+..-++.   -...|+.+|+-
T Consensus        96 ~~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf  175 (219)
T COG4845          96 ETETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRF  175 (219)
T ss_pred             CCcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeecce
Confidence            8778889999999999999999999999998874 3333332 34568999999987765433331   13356777776


Q ss_pred             eeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhh
Q 036766          417 VQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRL  466 (470)
Q Consensus       417 ~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~l  466 (470)
                      .++    ||++    +||++++++|..+||.|+++|++.|++++++|-.+
T Consensus       176 ~~~----~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~  217 (219)
T COG4845         176 YEE----DGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI  217 (219)
T ss_pred             ecc----CCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence            654    7755    59999999999999999999999999999998643

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.75  E-value=2.1e-18  Score=138.41  Aligned_cols=74  Identities=41%  Similarity=0.780  Sum_probs=72.0

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      .+|++|.+|..+.+++|.+|+|++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|.+|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.69  E-value=7.8e-17  Score=164.89  Aligned_cols=79  Identities=37%  Similarity=0.614  Sum_probs=76.0

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..+|+||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|++|++|+.++..+
T Consensus         2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875          2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999999997644

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.69  E-value=1.1e-15  Score=161.91  Aligned_cols=81  Identities=37%  Similarity=0.645  Sum_probs=76.4

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC-ccCCCCeEEEEeeCC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE-TVEPGTKIAVISKSG  176 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~-~v~~G~~l~~i~~~~  176 (470)
                      .++|+||++|++|+||+|.+|+|++||.|++||+|++|||||++++++||.+|+|.++++++|+ .|++|++|++|+.++
T Consensus         2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~   81 (464)
T PRK11892          2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG   81 (464)
T ss_pred             CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence            3589999999999999999999999999999999999999999999999999999999999995 799999999998655


Q ss_pred             CC
Q 036766          177 EG  178 (470)
Q Consensus       177 ~~  178 (470)
                      ++
T Consensus        82 ~~   83 (464)
T PRK11892         82 ES   83 (464)
T ss_pred             Cc
Confidence            43

>PRK06748 hypothetical protein; Validated

Probab=99.66  E-value=4.6e-16  Score=126.74  Aligned_cols=63  Identities=24%  Similarity=0.307  Sum_probs=61.0

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEc-CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIET-DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evet-dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      .|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++||.|++|++|+.|++
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            49999999999999999999999999 9999999999999999999999999999999999964

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.55  E-value=2.2e-14  Score=114.16  Aligned_cols=63  Identities=24%  Similarity=0.418  Sum_probs=60.7

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus         9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889          9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            359999999999999999999999999999999999999999999999999999999999884

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.50  E-value=9.3e-14  Score=110.67  Aligned_cols=72  Identities=38%  Similarity=0.635  Sum_probs=69.7

Q ss_pred             EEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          101 AVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       101 v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      +.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            678999999999999999999999999999999999999999999999999999999999999999999874

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.47  E-value=2.4e-13  Score=149.95  Aligned_cols=76  Identities=33%  Similarity=0.604  Sum_probs=73.4

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ..+|+||+||  |+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|+.|+.+
T Consensus         2 ~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854          2 AIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             CceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            3579999999  999999999999999999999999999999999999999999999999999999999999999875

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.46  E-value=1.4e-13  Score=123.82  Aligned_cols=63  Identities=37%  Similarity=0.551  Sum_probs=61.0

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .-|++.+.+|++||+|++||.||+||.|||.++|+||.+|+|.+|++++||.|..||+|+.|+
T Consensus        77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            349999999999999999999999999999999999999999999999999999999999985

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.45  E-value=3.5e-13  Score=106.82  Aligned_cols=62  Identities=29%  Similarity=0.466  Sum_probs=60.4

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .|+|.+|++++||.|++||+|+++|+||+.+++.+|.+|+|.++++++|+.|..|++|+.|+
T Consensus         9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            49999999999999999999999999999999999999999999999999999999999984

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.44  E-value=3e-13  Score=147.76  Aligned_cols=78  Identities=46%  Similarity=0.788  Sum_probs=75.2

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      .++++||+||++|++|+|++|+|++||.|++||+|+++||||++++++|+.+|+|.++++++|+.|++|++|+.|+..
T Consensus         2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~   79 (590)
T TIGR02927         2 AFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA   79 (590)
T ss_pred             CeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence            367999999999999999999999999999999999999999999999999999999999999999999999999764

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.36  E-value=3e-12  Score=139.23  Aligned_cols=79  Identities=41%  Similarity=0.679  Sum_probs=74.9

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      .++++||++|+ |.+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..+.
T Consensus         2 ~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~   80 (547)
T PRK11855          2 AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA   80 (547)
T ss_pred             CceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence            46799999999 99999999999999999999999999999999999999999999999999999999999999975443

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.35  E-value=3.5e-12  Score=112.85  Aligned_cols=62  Identities=27%  Similarity=0.518  Sum_probs=60.2

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      ..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++||.|..|++|+.|
T Consensus        68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            45999999999999999999999999999999999999999999999999999999999987

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.29  E-value=9.2e-12  Score=113.34  Aligned_cols=62  Identities=26%  Similarity=0.561  Sum_probs=60.1

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      ..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus        91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            45899999999999999999999999999999999999999999999999999999999987

>PRK07051 hypothetical protein; Validated

Probab=99.29  E-value=1.9e-11  Score=99.57  Aligned_cols=69  Identities=30%  Similarity=0.422  Sum_probs=63.2

Q ss_pred             EEEEccCCCCCCceEEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEE
Q 036766           99 VDAVVPFMGESITDGTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAV  171 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~  171 (470)
                      .++..|      ..|++.+       |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.
T Consensus         4 ~~~~ap------~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~   77 (80)
T PRK07051          4 HEIVSP------LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR   77 (80)
T ss_pred             cEEeCC------CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence            455666      3477888       999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q 036766          172 IS  173 (470)
Q Consensus       172 i~  173 (470)
                      ++
T Consensus        78 i~   79 (80)
T PRK07051         78 IE   79 (80)
T ss_pred             Ee
Confidence            85

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.28  E-value=1e-11  Score=134.80  Aligned_cols=76  Identities=34%  Similarity=0.622  Sum_probs=72.7

Q ss_pred             EEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          100 DAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       100 ~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +|+||+||+. .+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+.|.+|++|++|+..+
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~   77 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGA   77 (546)
T ss_pred             ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEeccc
Confidence            5899999987 999999999999999999999999999999999999999999999999999999999999997543

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.24  E-value=4.3e-11  Score=92.74  Aligned_cols=62  Identities=44%  Similarity=0.706  Sum_probs=59.6

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      .+|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus         6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            46999999999999999999999999999999999999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.23  E-value=2.2e-11  Score=118.02  Aligned_cols=62  Identities=27%  Similarity=0.445  Sum_probs=59.5

Q ss_pred             eEEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .|++.+       |+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++||.|..|++|+.|+
T Consensus       205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            477777       99999999999999999999999999999999999999999999999999999984

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.19  E-value=4.3e-11  Score=109.56  Aligned_cols=62  Identities=26%  Similarity=0.417  Sum_probs=59.0

Q ss_pred             eEEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      -|++.+       |+|++||.|++||+||.||+||+..+|+|+.+|+|.++++++|+.|..|++|+.|+
T Consensus        88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531        88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            477876       99999999999999999999999999999999999999999999999999999874

The gene name is accB or fabE.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.18  E-value=2.5e-10  Score=88.37  Aligned_cols=73  Identities=44%  Similarity=0.745  Sum_probs=70.3

Q ss_pred             EEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          100 DAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       100 ~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      ++.+|+++....+|+|.+|+++.|+.+..|++++.+|++|+...+.++.+|++.+..+.+|+.+..|++|+.+
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.14  E-value=1.1e-10  Score=106.70  Aligned_cols=61  Identities=30%  Similarity=0.481  Sum_probs=58.2

Q ss_pred             EEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          113 GTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       113 g~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      |++..       |+|++||.|++||+||.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.|+
T Consensus        88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302         88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            67776       99999999999999999999999999999999999999999999999999999873

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.13  E-value=1.4e-10  Score=126.25  Aligned_cols=63  Identities=24%  Similarity=0.523  Sum_probs=61.3

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      .|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus       533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            599999999999999999999999999999999999999999999999999999999999964

>TIGR02712 urea_carbox urea carboxylase

Probab=99.02  E-value=5.7e-10  Score=130.70  Aligned_cols=63  Identities=32%  Similarity=0.580  Sum_probs=61.0

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus      1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            369999999999999999999999999999999999999999999999999999999999884

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.96  E-value=9.8e-10  Score=119.88  Aligned_cols=59  Identities=24%  Similarity=0.440  Sum_probs=57.0

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeE
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKI  169 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l  169 (470)
                      ..|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++++++|+.|.+|++|
T Consensus       524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            45999999999999999999999999999999999999999999999999999999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.95  E-value=2e-09  Score=117.69  Aligned_cols=63  Identities=21%  Similarity=0.431  Sum_probs=60.7

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|++|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|.
T Consensus       531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~  593 (593)
T PRK14040        531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA  593 (593)
T ss_pred             ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            358999999999999999999999999999999999999999999999999999999999873

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.92  E-value=2.1e-09  Score=125.01  Aligned_cols=63  Identities=24%  Similarity=0.489  Sum_probs=60.7

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus      1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            359999999999999999999999999999999999999999999999999999999999884

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.82  E-value=8.7e-09  Score=112.82  Aligned_cols=63  Identities=30%  Similarity=0.554  Sum_probs=61.0

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus       529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            458999999999999999999999999999999999999999999999999999999999985

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.75  E-value=1.8e-08  Score=106.42  Aligned_cols=62  Identities=24%  Similarity=0.409  Sum_probs=60.6

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .|+|+.+.|++|++|.+||+|+.+|.|||+..|.||.+|+|.++.+++|+.|..|++|+.++
T Consensus       583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            49999999999999999999999999999999999999999999999999999999999985

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.73  E-value=2.5e-08  Score=116.61  Aligned_cols=62  Identities=29%  Similarity=0.561  Sum_probs=60.6

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .|+|++|+|++||.|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            49999999999999999999999999999999999999999999999999999999999985

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.60  E-value=8.8e-08  Score=104.28  Aligned_cols=62  Identities=26%  Similarity=0.520  Sum_probs=60.1

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .|.|+++.|++||+|++||+|+.+|.|||+..|.||.+|+|.+++|+.||.|..|+.|..++
T Consensus      1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            39999999999999999999999999999999999999999999999999999999999875

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.30  E-value=1e-06  Score=94.49  Aligned_cols=62  Identities=27%  Similarity=0.475  Sum_probs=60.4

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .|+|+++.|++|++|++||+|+.+..|||++.|.||.+|+|+++.+..|+.+..|+.+++++
T Consensus      1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred             CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence            59999999999999999999999999999999999999999999999999999999999886

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.19  E-value=2.8e-06  Score=71.51  Aligned_cols=64  Identities=19%  Similarity=0.262  Sum_probs=51.5

Q ss_pred             eEEEEccCCCCCCceEEEEE-EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCc
Q 036766           98 LVDAVVPFMGESITDGTLAK-FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET  162 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~-w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~  162 (470)
                      ...+-|=+.+..+ -|+|.. |++++|+.|++||+|+.||++|+..+|.||.+|+|.++..+.++.
T Consensus        15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            4556565555543 577777 666779999999999999999999999999999999987666553

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=98.10  E-value=5.1e-06  Score=95.27  Aligned_cols=66  Identities=30%  Similarity=0.581  Sum_probs=62.4

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|++++|+|+.|+.|..||+-+|||.|||.|.+.++.+|+| +...+||+.+.+|++|+.+..++.
T Consensus       692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDdp  757 (2196)
T KOG0368|consen  692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDDP  757 (2196)
T ss_pred             CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCCh
Confidence            579999999999999999999999999999999999999999 567999999999999999987765

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.97  E-value=6.1e-06  Score=86.44  Aligned_cols=62  Identities=26%  Similarity=0.462  Sum_probs=59.4

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .|.|.+++||+||.|++||.|+.++.|||...+.||.+|++..+.++.|++|.-|.+|.+++
T Consensus       609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            37999999999999999999999999999999999999999999999999999999998863

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.84  E-value=3.1e-05  Score=66.89  Aligned_cols=61  Identities=20%  Similarity=0.194  Sum_probs=44.6

Q ss_pred             EEEEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC
Q 036766           99 VDAVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG  160 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG  160 (470)
                      ..|-|=+.+.. .-|.|+.... ++|+.|++||++++||++|+..+|.||.+|+|.++.-+..
T Consensus        17 ~~vGiT~~aq~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~   78 (110)
T TIGR03077        17 VRLGLTSRMQE-NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE   78 (110)
T ss_pred             EEEeeCHHHHH-hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence            44544444432 2234444433 6699999999999999999999999999999999854433

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.79  E-value=8.4e-05  Score=78.48  Aligned_cols=67  Identities=19%  Similarity=0.348  Sum_probs=58.9

Q ss_pred             ceEEEEEEE-eCCCCeeeCCCcEEEEEcC------------------------------------------------Cee
Q 036766          111 TDGTLAKFL-KGPGDRVELDEPIAQIETD------------------------------------------------KVT  141 (470)
Q Consensus       111 ~eg~I~~w~-v~~Gd~V~~gd~l~evetd------------------------------------------------K~~  141 (470)
                      ..|.|.+++ +++||.|++||+|++|++.                                                ...
T Consensus       130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~  209 (409)
T PRK09783        130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR  209 (409)
T ss_pred             cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence            469999999 9999999999999999831                                                013


Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|.||++|+|.+..+++|+.|..|++|+.|...+.
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~  245 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP  245 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence            579999999999999999999999999999987654

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.76  E-value=5.6e-05  Score=65.65  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=43.9

Q ss_pred             eEEEEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766           98 LVDAVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      ...|-|=+.+.. .-|.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.++.
T Consensus        18 ~~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         18 IVRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             EEEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            345555554443 2244444444 569999999999999999999999999999999984

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.74  E-value=7.8e-05  Score=76.01  Aligned_cols=36  Identities=17%  Similarity=0.380  Sum_probs=32.7

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|.||.+|+|..+.+++|+.|..|++|+.|.+.+.
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~  240 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ  240 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence            469999999999999999999999999999986654

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.71  E-value=5.2e-05  Score=68.58  Aligned_cols=62  Identities=21%  Similarity=0.251  Sum_probs=50.4

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeC-CCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKG-PGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG  160 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~-~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG  160 (470)
                      ...|-|=+++.. .-|.|+.+.++ +|++|++||+++.||++|+..+|.||.+|+|.++..+--
T Consensus        30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~   92 (144)
T PRK13380         30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE   92 (144)
T ss_pred             EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence            345555555543 35778888886 899999999999999999999999999999999875543

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.67  E-value=0.00013  Score=74.14  Aligned_cols=67  Identities=15%  Similarity=0.257  Sum_probs=58.6

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|.|.+++|++||.|++||+|+++++..                                                   
T Consensus        54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~  133 (310)
T PRK10559         54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT  133 (310)
T ss_pred             CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            56999999999999999999999998731                                                   


Q ss_pred             -------------------eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          140 -------------------VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       140 -------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                                         ....|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus       134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~  190 (310)
T PRK10559        134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS  190 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence                               02469999999999999999999999999999876543

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.65  E-value=9e-05  Score=74.64  Aligned_cols=67  Identities=21%  Similarity=0.374  Sum_probs=58.5

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe--------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV--------------------------------------------------  140 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~--------------------------------------------------  140 (470)
                      ..|.|.++++++||.|++||+|+.+++.-.                                                  
T Consensus        33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~  112 (322)
T TIGR01730        33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE  112 (322)
T ss_pred             ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            459999999999999999999999975311                                                  


Q ss_pred             ---------------------eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          141 ---------------------TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       141 ---------------------~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                                           ...|.||.+|+|..+.+++|+.+..|++|+.|...+.
T Consensus       113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~  170 (322)
T TIGR01730       113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLDP  170 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCCc
Confidence                                 2469999999999999999999999999999976543

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.62  E-value=0.00018  Score=63.79  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=55.2

Q ss_pred             EEEEccCCCCCCceEEEEEEE-eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEE---eecCCCccC---CCC-eEE
Q 036766           99 VDAVVPFMGESITDGTLAKFL-KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKEL---VAKEGETVE---PGT-KIA  170 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~-v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i---~v~eG~~v~---~G~-~l~  170 (470)
                      ..|-|=+.+.. .-|.|+.+. .++|++|++||+++.||++|...+|.||.+|+|.++   +.+..+.+.   -|+ -|+
T Consensus        24 ~~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~  102 (127)
T PRK01202         24 ATVGITDHAQE-QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLF  102 (127)
T ss_pred             EEEeeCHHHHh-hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEE
Confidence            44444444332 224444443 367999999999999999999999999999999999   454445555   554 888


Q ss_pred             EEeeCC
Q 036766          171 VISKSG  176 (470)
Q Consensus       171 ~i~~~~  176 (470)
                      .+...+
T Consensus       103 ~v~~~~  108 (127)
T PRK01202        103 KIKPSD  108 (127)
T ss_pred             EEEeCC
Confidence            887654

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.59  E-value=0.00017  Score=74.22  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~~  244 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTDH  244 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCCC
Confidence            358999999999999999999999999999987653

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.41  E-value=0.00035  Score=73.36  Aligned_cols=36  Identities=17%  Similarity=0.372  Sum_probs=32.8

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|.||.+|+|..+.+++|+.|..|++|+.|...+.
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~~  251 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPATN  251 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCCc
Confidence            369999999999999999999999999999976554

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.40  E-value=0.00032  Score=71.71  Aligned_cols=35  Identities=17%  Similarity=0.383  Sum_probs=32.0

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|.||++|+|..+.+.+|+.|..|++|+.|...+
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~  238 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTR  238 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCC
Confidence            47999999999999999999999999999997554

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.39  E-value=0.00036  Score=72.98  Aligned_cols=67  Identities=16%  Similarity=0.239  Sum_probs=57.2

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|+|.++++++||.|++||+|+.|++.-                                                   
T Consensus        70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~  149 (385)
T PRK09578         70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER  149 (385)
T ss_pred             CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46999999999999999999999998631                                                   


Q ss_pred             --------------------eeeeEecCCCeEEEEEeecCCCccCCC--CeEEEEeeCCC
Q 036766          140 --------------------VTIDVASPEAGVIKELVAKEGETVEPG--TKIAVISKSGE  177 (470)
Q Consensus       140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G--~~l~~i~~~~~  177 (470)
                                          ....|.||++|+|.+..+++|+.|..|  ++|+.|...+.
T Consensus       150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~  209 (385)
T PRK09578        150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDP  209 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCc
Confidence                                123699999999999999999999986  58988876553

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.36  E-value=0.00026  Score=52.32  Aligned_cols=36  Identities=25%  Similarity=0.549  Sum_probs=30.8

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ++.|.+|.+|+|.++++++|+.|+.|++|+.++..+
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            357889999999999999999999999999987643

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.26  E-value=0.00068  Score=70.92  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=57.0

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|.|.++++++||.|++||+|++|+..-                                                   
T Consensus        68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~  147 (385)
T PRK09859         68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN  147 (385)
T ss_pred             CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            46999999999999999999999998530                                                   


Q ss_pred             --------------------eeeeEecCCCeEEEEEeecCCCccCCCC--eEEEEeeCCC
Q 036766          140 --------------------VTIDVASPEAGVIKELVAKEGETVEPGT--KIAVISKSGE  177 (470)
Q Consensus       140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~--~l~~i~~~~~  177 (470)
                                          ....|.||++|+|.+..+++|+.|.+|+  +|+.|...+.
T Consensus       148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~  207 (385)
T PRK09859        148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDP  207 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecCC
Confidence                                1246999999999999999999999985  6888865543

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.26  E-value=0.00072  Score=71.07  Aligned_cols=67  Identities=24%  Similarity=0.313  Sum_probs=56.3

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|+|.++++++||.|++||+|++|+...                                                   
T Consensus        72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~  151 (397)
T PRK15030         72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  151 (397)
T ss_pred             CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            45999999999999999999999998531                                                   


Q ss_pred             --------------------eeeeEecCCCeEEEEEeecCCCccCCCCe--EEEEeeCCC
Q 036766          140 --------------------VTIDVASPEAGVIKELVAKEGETVEPGTK--IAVISKSGE  177 (470)
Q Consensus       140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~~--l~~i~~~~~  177 (470)
                                          -...|.||++|+|.+..+++|+.|..|++  |+.|...+.
T Consensus       152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~  211 (397)
T PRK15030        152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP  211 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecCc
Confidence                                12359999999999999999999999985  677755443

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.17  E-value=0.00049  Score=61.03  Aligned_cols=59  Identities=17%  Similarity=0.233  Sum_probs=43.7

Q ss_pred             EEEEccCCCCCCceEEEEEEE-eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeec
Q 036766           99 VDAVVPFMGESITDGTLAKFL-KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK  158 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~-v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~  158 (470)
                      ..|-|=+.+.. .-|.|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus        23 ~~vGiT~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~   82 (127)
T TIGR00527        23 ATVGITEFAQD-ELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA   82 (127)
T ss_pred             EEEeecHHHhh-CCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence            44444444432 234444443 357999999999999999999999999999999987633

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK12784 hypothetical protein; Provisional

Probab=97.13  E-value=0.0026  Score=50.71  Aligned_cols=65  Identities=15%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeee-EecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTID-VASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~-i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      -.|+|-++++.+++.|-+.++|+-|+++...++ |.--.+|.|.-+.+++||.+..+..|+.++++
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD   77 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence            469999999999999999999999999765554 88899999999999999999999999999764

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.10  E-value=0.00053  Score=50.68  Aligned_cols=30  Identities=10%  Similarity=0.299  Sum_probs=27.0

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV  140 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~  140 (470)
                      ..|+|.+|+|++||.|++||+|+++++...
T Consensus         9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~   38 (50)
T PF13533_consen    9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL   38 (50)
T ss_pred             CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence            469999999999999999999999997643

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.06  E-value=0.0011  Score=70.19  Aligned_cols=66  Identities=21%  Similarity=0.351  Sum_probs=55.4

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|+|.++++++||.|++||+|++|....                                                   
T Consensus        94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~  173 (415)
T PRK11556         94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS  173 (415)
T ss_pred             ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            56999999999999999999999997531                                                   


Q ss_pred             --------------------eeeeEecCCCeEEEEEeecCCCccCCCC--eEEEEeeCC
Q 036766          140 --------------------VTIDVASPEAGVIKELVAKEGETVEPGT--KIAVISKSG  176 (470)
Q Consensus       140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~--~l~~i~~~~  176 (470)
                                          ....|.||++|+|....+++|+.|..|+  +|+.|...+
T Consensus       174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~~  232 (415)
T PRK11556        174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTH  232 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecCC
Confidence                                0236999999999999999999999985  677775443

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.02  E-value=0.0015  Score=67.97  Aligned_cols=67  Identities=21%  Similarity=0.393  Sum_probs=55.7

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|.|.++++++||.|++||+|++++...                                                   
T Consensus        68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~  147 (370)
T PRK11578         68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD  147 (370)
T ss_pred             cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            45999999999999999999999998631                                                   


Q ss_pred             ----------------------------------eeeeEecCCCeEEEEEeecCCCccCCC---CeEEEEeeCCC
Q 036766          140 ----------------------------------VTIDVASPEAGVIKELVAKEGETVEPG---TKIAVISKSGE  177 (470)
Q Consensus       140 ----------------------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G---~~l~~i~~~~~  177 (470)
                                                        ....|.||++|+|..+.+..|+.|.+|   ++|+.|...+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~~~  222 (370)
T PRK11578        148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMST  222 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecCCc
Confidence                                              012699999999999999999999776   47888865543

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=96.91  E-value=0.00086  Score=67.68  Aligned_cols=66  Identities=18%  Similarity=0.414  Sum_probs=48.8

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|.| +|+|++||.|++||+|++++++.                                                   
T Consensus        28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  106 (328)
T PF12700_consen   28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI  106 (328)
T ss_dssp             S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred             CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence            45999 99999999999999999999751                                                   


Q ss_pred             ----------------eee----------eEecCCCeEEE-------------------------EEeecCCCccCCCCe
Q 036766          140 ----------------VTI----------DVASPEAGVIK-------------------------ELVAKEGETVEPGTK  168 (470)
Q Consensus       140 ----------------~~~----------~i~ap~~G~l~-------------------------~i~v~eG~~v~~G~~  168 (470)
                                      ...          .|.||++|+|.                         ++.+++|+.|..|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~  186 (328)
T PF12700_consen  107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP  186 (328)
T ss_dssp             STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred             HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence                            111          39999999999                         999999999999999


Q ss_pred             EEEEeeCCC
Q 036766          169 IAVISKSGE  177 (470)
Q Consensus       169 l~~i~~~~~  177 (470)
                      |+.|.....
T Consensus       187 l~~i~~~~~  195 (328)
T PF12700_consen  187 LFTIADLSN  195 (328)
T ss_dssp             SEEEEEESE
T ss_pred             eeeeccCCc
Confidence            999976543

...

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=96.80  E-value=0.0025  Score=56.10  Aligned_cols=44  Identities=27%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             EEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766          113 GTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus       113 g~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      |.|+.+.. ++|+.|++|++++.||+.|...++.||.+|+|.++.
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN   75 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN   75 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence            44444433 558999999999999999999999999999999875

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.79  E-value=0.0031  Score=64.23  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=28.7

Q ss_pred             eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .|.||++|+|..+.+.+|+.|.. ++|+.|...+
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence            57899999999999999999986 7888887544

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=96.74  E-value=0.0051  Score=60.40  Aligned_cols=58  Identities=31%  Similarity=0.486  Sum_probs=51.5

Q ss_pred             EEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          115 LAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       115 I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      +.+..++-||.|++||+|+.|+.    .+|.||.+|+|.. ++.+|-.|+.|..|+.|+.-.+
T Consensus       174 i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDPR~~  231 (256)
T TIGR03309       174 IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDPRGE  231 (256)
T ss_pred             EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECCCCC
Confidence            34559999999999999999985    7999999999977 5899999999999999987654

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.55  E-value=0.0045  Score=48.97  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=31.8

Q ss_pred             eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .|.||.+|+|.++++++||.|+.||+|+.++...
T Consensus         4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K   37 (71)
T PRK05889          4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK   37 (71)
T ss_pred             EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            5899999999999999999999999999998665

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.15  E-value=0.0057  Score=54.10  Aligned_cols=58  Identities=22%  Similarity=0.279  Sum_probs=43.2

Q ss_pred             eEEEEccCCCCCCceEEEEEE-EeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766           98 LVDAVVPFMGESITDGTLAKF-LKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w-~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      ...|-|-+.+.. .-|.|+-+ +.++|++|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus        25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence            344545444443 23445444 34678899999999999999999999999999998764

>PRK06748 hypothetical protein; Validated

Probab=96.01  E-value=0.011  Score=48.51  Aligned_cols=32  Identities=31%  Similarity=0.377  Sum_probs=30.8

Q ss_pred             eEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766          143 DVASPEAGVIKELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      -|.||..|+|.++++++||.|..||+|+.+++
T Consensus         6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET   37 (83)
T PRK06748          6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET   37 (83)
T ss_pred             EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            48999999999999999999999999999998

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=95.92  E-value=0.016  Score=56.77  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=31.7

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +.|.||++|+|..+.+.+|+.|..|++|+.|.+.+
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~  123 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG  123 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence            45899999999999999999999999999987654

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.85  E-value=0.026  Score=59.13  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=29.9

Q ss_pred             eEecCCCeEEEEEee-cCCCccCCCCeEEEEeeCC
Q 036766          143 DVASPEAGVIKELVA-KEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       143 ~i~ap~~G~l~~i~v-~eG~~v~~G~~l~~i~~~~  176 (470)
                      .|.||++|+|..+.+ .+|+.|..|++|+.|.+..
T Consensus       273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~~  307 (423)
T TIGR01843       273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPED  307 (423)
T ss_pred             EEECCCCcEEEEEEEEccCceecCCCeeEEEecCC
Confidence            489999999999876 7999999999999997543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=95.67  E-value=0.019  Score=48.81  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=38.4

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      -|.-.+-.|++||+|++||.|++.+ +-....|-|+.+|+|..|.
T Consensus        38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence            3556678999999999999999997 4668899999999999874

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.46  E-value=0.03  Score=43.92  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .|.||.+|+|.++.+++|+.|..|++|+.++...
T Consensus         3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k   36 (70)
T PRK08225          3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK   36 (70)
T ss_pred             eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            5789999999999999999999999999998755

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=95.34  E-value=0.026  Score=43.03  Aligned_cols=32  Identities=34%  Similarity=0.659  Sum_probs=29.8

Q ss_pred             EecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          144 VASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       144 i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      +.||.+|+|.++++++|+.|+.|++|+.++..
T Consensus         2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~   33 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM   33 (67)
T ss_pred             ccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence            68999999999999999999999999999754

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.31  E-value=0.054  Score=54.92  Aligned_cols=58  Identities=26%  Similarity=0.274  Sum_probs=47.8

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEc---CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIET---DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evet---dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      +=+....++.||.|++||+|++|=.   +....++.||.+|+|.-  ....-.|..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence            4577788999999999999999965   45677899999999965  4455689999998876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=95.21  E-value=0.028  Score=50.66  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=33.0

Q ss_pred             eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ....|.||..|++-+++|++||.|+.||+||+|+.-
T Consensus        69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAM  104 (140)
T COG0511          69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAM  104 (140)
T ss_pred             cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEee
Confidence            456799999999999999999999999999999863

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.95  E-value=0.092  Score=52.88  Aligned_cols=58  Identities=24%  Similarity=0.331  Sum_probs=45.7

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcC--CeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETD--KVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetd--K~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      +=+.++.++.||.|++||+|+.|..-  ....+|.||.+|+|.-  ....-.|..|+.|+.|
T Consensus       227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~--~~~~~~v~~G~~l~~i  286 (287)
T cd06251         227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG--RNNLPLVNEGDALFHI  286 (287)
T ss_pred             CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE--ecCCCccCCCCEEEEe
Confidence            33456799999999999999999642  3347899999999954  4456678899998876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=94.92  E-value=0.096  Score=54.24  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|.||.+|+|.+..+..|+.|.+|++|+.+.+.+.
T Consensus       209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~~  244 (352)
T COG1566         209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDS  244 (352)
T ss_pred             CEEECCCCceEEeecccCCCeecCCCceEEEecccc
Confidence            348999999999999999999999999999877554

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=94.77  E-value=0.09  Score=54.74  Aligned_cols=59  Identities=24%  Similarity=0.437  Sum_probs=47.4

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      .|=+....++.||.|++||+|++|-.    +....+|.||.+|+|.-  ....-.|..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRFVRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCccccCCCeEEEe
Confidence            45677899999999999999999854    23444579999999954  5567789999999876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.73  E-value=0.12  Score=52.87  Aligned_cols=60  Identities=22%  Similarity=0.353  Sum_probs=47.9

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .+=+....++.||.|++||+|++|-.    .....+|.||.+|+|.-.  ...-.|..|+.|+.|.
T Consensus       251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~~v~~G~~l~~i~  314 (316)
T cd06252         251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPGLVRRGDCLAVLA  314 (316)
T ss_pred             CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCCccCCCCEEEEEe
Confidence            35577889999999999999999865    345678999999999643  3445688899998874

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=94.39  E-value=0.13  Score=52.77  Aligned_cols=58  Identities=21%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      +=+....++.||.|++||+|++|-.    .....+|.||.+|+|.-  ....-.|..|+.|+.|
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL  324 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence            4466788999999999999999964    23467899999999965  4455689999999876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=94.11  E-value=0.077  Score=44.59  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=28.7

Q ss_pred             eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .|.||++|+|..+.+++|+.|..|++|+.|...+
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~   34 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTD   34 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccc
Confidence            3788999999988899999999999999887653

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=93.97  E-value=0.096  Score=46.63  Aligned_cols=37  Identities=16%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      -...|.||.+|+|.++++++||.|..|++|+.++...
T Consensus        60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK   96 (130)
T PRK06549         60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK   96 (130)
T ss_pred             CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence            3667999999999999999999999999999998653

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=93.79  E-value=0.086  Score=41.99  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=29.5

Q ss_pred             eEecCCCeEEEE------EeecCCCccCCCCeEEEEeeCCC
Q 036766          143 DVASPEAGVIKE------LVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       143 ~i~ap~~G~l~~------i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      +|.+|..|...+      +++++|+.|+.||+|+.|+....
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~   42 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKM   42 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSE
T ss_pred             EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCcc
Confidence            577888876555      99999999999999999987543

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=93.46  E-value=0.12  Score=47.24  Aligned_cols=36  Identities=22%  Similarity=0.416  Sum_probs=32.6

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|.||..|+|.++++++||.|..||+|+.++...
T Consensus        84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK  119 (153)
T PRK05641         84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK  119 (153)
T ss_pred             CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence            356999999999999999999999999999997654

>COG3608 Predicted deacylase [General function prediction only]

Probab=93.40  E-value=0.14  Score=52.29  Aligned_cols=61  Identities=28%  Similarity=0.492  Sum_probs=48.5

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcC---CeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETD---KVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetd---K~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      ++=+++.+|+.||+|++||.|+.|-..   +...||.|+.+|+|..+.-  --.+..|+.++.+..
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~~  326 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVGR  326 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeecc
Confidence            466899999999999999999988764   8899999999999976631  225666677766643

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=93.33  E-value=0.26  Score=58.55  Aligned_cols=81  Identities=16%  Similarity=0.213  Sum_probs=60.1

Q ss_pred             CCceEEEEccCCCCCCce----------EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccC
Q 036766           95 GGDLVDAVVPFMGESITD----------GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVE  164 (470)
Q Consensus        95 ~~~~~~v~~P~lg~~~~e----------g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~  164 (470)
                      .++...|++-.+|+....          |+..++.+++++.+..++.....+. .-...|.||..|+|.++++++||.|+
T Consensus      1019 ~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~ 1097 (1143)
T TIGR01235      1019 KGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVN 1097 (1143)
T ss_pred             CCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeC
Confidence            355666677677655333          4666777888887777666544432 22346999999999999999999999


Q ss_pred             CCCeEEEEeeCC
Q 036766          165 PGTKIAVISKSG  176 (470)
Q Consensus       165 ~G~~l~~i~~~~  176 (470)
                      .||+|++++...
T Consensus      1098 ~Gd~L~~iEamK 1109 (1143)
T TIGR01235      1098 KGDPLVVLEAMK 1109 (1143)
T ss_pred             CCCEEEEEEecc
Confidence            999999998754

This enzyme plays a role in gluconeogensis but not glycolysis.

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.27  E-value=0.2  Score=50.51  Aligned_cols=56  Identities=18%  Similarity=0.189  Sum_probs=39.5

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEc--CCeeeeEecCCCeEEEEEeecCCCccCCCCeE
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIET--DKVTIDVASPEAGVIKELVAKEGETVEPGTKI  169 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evet--dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l  169 (470)
                      .+=+...+++.||.|++||+|++|=.  .....+|.||++|+|.-+.  ..-.|..|+.|
T Consensus       230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l  287 (288)
T cd06254         230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL  287 (288)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence            35577788899999999999998843  2445678999999886543  23455666554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=93.16  E-value=0.072  Score=53.08  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=24.8

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|.++..|+|.+|+|++|+.|+.||+|+.|++..
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~   36 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD   36 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred             EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence            57889999999999999999999999999998543

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=93.05  E-value=0.12  Score=53.12  Aligned_cols=41  Identities=34%  Similarity=0.441  Sum_probs=35.4

Q ss_pred             EEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          133 AQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       133 ~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      +.||.+  .+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   82 (346)
T PRK10476         42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR   82 (346)
T ss_pred             eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence            344443  68899999999999999999999999999999754

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=92.92  E-value=0.17  Score=50.11  Aligned_cols=42  Identities=33%  Similarity=0.572  Sum_probs=34.5

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcCCe--eeeEecCCCeEEEEEee
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETDKV--TIDVASPEAGVIKELVA  157 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetdK~--~~~i~ap~~G~l~~i~v  157 (470)
                      |..-+.+|+|||+|++||+|++   ||-  .+-+.||.+|+|.+|.-
T Consensus        38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R   81 (257)
T PF05896_consen   38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR   81 (257)
T ss_pred             CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence            3345889999999999999996   554  45589999999998765

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=92.82  E-value=0.15  Score=46.46  Aligned_cols=46  Identities=24%  Similarity=0.372  Sum_probs=35.3

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeee-EecCCCeEEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTID-VASPEAGVIKELV  156 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~-i~ap~~G~l~~i~  156 (470)
                      .||..+-..+.+||.|.+||.|+-+.|-|..+- ++||.+|+|.=+.
T Consensus        87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            467788899999999999999999999999876 9999999996554

; PDB: 3D4R_D.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=92.66  E-value=0.12  Score=52.57  Aligned_cols=36  Identities=17%  Similarity=0.344  Sum_probs=33.1

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .+.|.++.+|+|.++++++|+.|+.||+|+.|+..+
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~   77 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTN   77 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchH
Confidence            678999999999999999999999999999997543

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=92.64  E-value=0.16  Score=51.76  Aligned_cols=43  Identities=28%  Similarity=0.514  Sum_probs=36.8

Q ss_pred             EEEcCCeeeeEecCCC---eEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          134 QIETDKVTIDVASPEA---GVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       134 evetdK~~~~i~ap~~---G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .|+...-...|.++.+   |+|.+++|++||.|+.|++|+.|+...
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~   51 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP   51 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence            4555555667899999   999999999999999999999998653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK07051 hypothetical protein; Validated

Probab=92.47  E-value=0.19  Score=40.65  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=32.8

Q ss_pred             eeeEecCCCeEEEE-------EeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKE-------LVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~-------i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..+|.||..|++.+       +++++|+.|..|++++.++...
T Consensus         3 ~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k   45 (80)
T PRK07051          3 QHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMK   45 (80)
T ss_pred             ccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcc
Confidence            45789999999999       9999999999999999998754

>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2

Probab=91.90  E-value=3.9  Score=43.81  Aligned_cols=174  Identities=17%  Similarity=0.229  Sum_probs=87.3

Q ss_pred             EeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhC--Ccc--ce-EE------eCCeEEEe-----eccc
Q 036766          270 FNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQ--PII--NA-VI------DGDDIIYR-----DYID  333 (470)
Q Consensus       270 ~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~--P~l--N~-~i------~~~~i~~~-----~~i~  333 (470)
                      ...++-+.+.++++.-++     +  ++|++.++..+++.||.+.  |..  +. .+      +..+.+..     +...
T Consensus       253 ~~~i~~~~~~~ll~~CR~-----~--~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~~p~~~~~~~~~~  325 (480)
T PF07247_consen  253 SLSISPEELKKLLKACRK-----H--GTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNLRRFLPEDSELRDEYS  325 (480)
T ss_pred             EEEECHHHHHHHHHHHHH-----c--CCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeCCCCCCcccccccccc
Confidence            445555555555444322     2  7899999999999999963  221  11 11      11111111     1223


Q ss_pred             EEEEEecCCC--eEEEEEEe-CCCCCHHHHHHHHHHHHHHHh-cCC------------C-CC-----------CcCCCCe
Q 036766          334 ISIAVGTSKG--LVVPVIRN-ADKMNFADIEKEINTLAKKAN-DGS------------I-SI-----------DEMAGGS  385 (470)
Q Consensus       334 igiAV~~~~G--L~vpvI~~-a~~~sl~ei~~~i~~l~~~ar-~g~------------l-~~-----------~d~~ggt  385 (470)
                      .|..|...+-  .+.++-.+ ....+|.++++++++-+++.. ++.            + ..           .-..++|
T Consensus       326 ~g~~v~~~~~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~r~~t  405 (480)
T PF07247_consen  326 YGNFVGGIDFSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDIWDFFKSKIGKPRRST  405 (480)
T ss_pred             ceeEEEccceeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCHHHHHHhhcCCCCCCc
Confidence            3444432221  11111111 122467888888887666532 221            0 11           1123689


Q ss_pred             EEEEeCCCCCC-CC----ccccc-CCC---ceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHH-HHHHHH
Q 036766          386 FTISNGGVYGS-LL----STPII-NPP---QSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREA-VFFLRR  455 (470)
Q Consensus       386 ftISnlG~~G~-~~----~tpii-~~p---~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~a-a~Fl~~  455 (470)
                      |.|||+|.+.. ..    ..-++ ..+   -.+.+.++-+.    +.+|      -|.+++++=.-+++=.+. -.|++.
T Consensus       406 ~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS----~~~G------~L~i~~s~~~~~~~~~~~~~~~~~~  475 (480)
T PF07247_consen  406 FEVSNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVIS----TKGG------GLNISISWQEGIVEDEEMEDEFMEL  475 (480)
T ss_pred             EEEEeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEE----cCCC------ceEEEEEEeCCcccccchHHHHHHH
Confidence            99999999973 10    01111 011   11112222111    0123      478999988888876666 488888


Q ss_pred             HHHHh
Q 036766          456 IKDVV  460 (470)
Q Consensus       456 l~~~L  460 (470)
                      |++.|
T Consensus       476 ~~~~~  480 (480)
T PF07247_consen  476 FKQNL  480 (480)
T ss_pred             HHhhC
Confidence            88754

3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=91.75  E-value=0.27  Score=52.07  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=45.2

Q ss_pred             EEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       117 ~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      -..++.|+.-..=+....|+. .-.+.|.++.+|+|.++++++|+.|+.||+|+.|+..+
T Consensus        64 v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~  122 (415)
T PRK11556         64 AATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP  122 (415)
T ss_pred             EEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence            333444444444445677776 45788999999999999999999999999999997643

>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT

Probab=91.59  E-value=2.8  Score=44.32  Aligned_cols=164  Identities=12%  Similarity=0.095  Sum_probs=89.6

Q ss_pred             EEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCC------
Q 036766          269 TFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSK------  342 (470)
Q Consensus       269 ~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~------  342 (470)
                      ...++++..+.+..+..          +.|++++++-|++.+|.++  ++..  + . .....+.+++.|+.-.      
T Consensus       232 ~~~~~~~~~l~~~a~~~----------g~T~ndvllaa~~~al~~~--~~~~--~-~-~~~~~i~~~~pv~~R~~~~~~~  295 (446)
T TIGR02946       232 AAQSLPLADVKAVAKAF----------GVTINDVVLAAVAGALRRY--LEER--G-E-LPDDPLVAMVPVSLRPMEDDSE  295 (446)
T ss_pred             EeeccCHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHH--HHHc--C-C-CCCCceEEEEeeeccccccCCC
Confidence            45567777666554332          7799999999999999875  2221  1 1 1222366777776311      


Q ss_pred             -C----eEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCC-------------CC--------C-----cCCCCeEEEEeC
Q 036766          343 -G----LVVPVIRNADKMNFADIEKEINTLAKKANDGSI-------------SI--------D-----EMAGGSFTISNG  391 (470)
Q Consensus       343 -G----L~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l-------------~~--------~-----d~~ggtftISnl  391 (470)
                       |    .+...+. .+..+..+...++++-...+++...             -|        .     .....+++|||+
T Consensus       296 ~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNv  374 (446)
T TIGR02946       296 GGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNV  374 (446)
T ss_pred             CCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCC
Confidence             1    2221122 2334455555666666666665420             11        0     001247899999


Q ss_pred             CCCCC---------CCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766          392 GVYGS---------LLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEE  462 (470)
Q Consensus       392 G~~G~---------~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~  462 (470)
                      |....         ....++.++..-..++++-..     .+|      .|.+++++|-.++..  ..+|.+.+++.|++
T Consensus       375 pg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-----y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l~~  441 (446)
T TIGR02946       375 PGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-----YNG------QLDFGLLADRDAVPD--PQELADALEAALEE  441 (446)
T ss_pred             CCCCcccEecCeeEEEeeccccccCCCeEEEEEEe-----cCC------eEEEEEeechhhCCC--HHHHHHHHHHHHHH
Confidence            76531         112222221111112222111     133      477999999998884  77788888877765

This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.33  E-value=0.29  Score=52.48  Aligned_cols=42  Identities=29%  Similarity=0.355  Sum_probs=35.5

Q ss_pred             EEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          135 IETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       135 vetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      |..+.-...|.++..|+|.+++|+|||.|+.|++|+.++...
T Consensus        53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~   94 (457)
T TIGR01000        53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN   94 (457)
T ss_pred             EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence            443444567899999999999999999999999999997654

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=91.17  E-value=0.43  Score=49.58  Aligned_cols=57  Identities=21%  Similarity=0.341  Sum_probs=41.0

Q ss_pred             EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          118 FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       118 w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      +.++.|+....=..-+.|+.. -...|.++.+|.|.++++++|+.|+.||+|+.++..
T Consensus        39 ~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   95 (370)
T PRK11578         39 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   95 (370)
T ss_pred             EEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            344444433222234455544 355899999999999999999999999999999643

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=91.11  E-value=0.24  Score=53.03  Aligned_cols=43  Identities=23%  Similarity=0.436  Sum_probs=37.3

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      |.--+..|++||+|++||+|++-.. -..+.+.||.+|+|.+|.
T Consensus        38 G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~   80 (447)
T TIGR01936        38 GMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAIN   80 (447)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEe
Confidence            5556789999999999999998763 368889999999999984

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=91.08  E-value=0.35  Score=50.58  Aligned_cols=55  Identities=20%  Similarity=0.245  Sum_probs=43.1

Q ss_pred             eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ++.|+....-+..+.|+.. -...|.++.+|+|.++.+++|+.|+.||+|+.|+..
T Consensus        41 v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~   95 (385)
T PRK09859         41 LSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA   95 (385)
T ss_pred             eEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence            3444434444456677755 367899999999999999999999999999999754

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=91.06  E-value=0.31  Score=48.85  Aligned_cols=35  Identities=29%  Similarity=0.499  Sum_probs=32.3

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      +..|.+|.+|+|.++++++|+.|+.|++|+.++..
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~   60 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD   60 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence            56799999999999999999999999999999654

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=90.97  E-value=0.32  Score=51.56  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=34.1

Q ss_pred             CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          138 DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       138 dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..-...|.++.+|+|.++++++|+.|+.|++|+.|+...
T Consensus        55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~   93 (421)
T TIGR03794        55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPE   93 (421)
T ss_pred             CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHH
Confidence            333458999999999999999999999999999998654

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.81  E-value=0.34  Score=50.70  Aligned_cols=43  Identities=19%  Similarity=0.422  Sum_probs=37.4

Q ss_pred             EEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          134 QIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       134 evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .|........|.++.+|+|.+++|++||.|+.|++|+.++...
T Consensus        36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~   78 (423)
T TIGR01843        36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD   78 (423)
T ss_pred             EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence            5556677777899999999999999999999999999998654

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=90.60  E-value=0.26  Score=50.13  Aligned_cols=35  Identities=17%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +.|.++.+|.|.++++++||.|+.||+|+.++..+
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~   82 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPR   82 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHH
Confidence            56999999999999999999999999999997543

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=90.52  E-value=0.27  Score=51.69  Aligned_cols=36  Identities=14%  Similarity=0.337  Sum_probs=33.3

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .+.|.++.+|+|.++.+++|+.|+.||+|+.|+..+
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~   96 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTD   96 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHH
Confidence            788999999999999999999999999999997643

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=90.51  E-value=0.22  Score=50.11  Aligned_cols=41  Identities=27%  Similarity=0.511  Sum_probs=28.5

Q ss_pred             EEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          133 AQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       133 ~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +.|+.  -+..|.++.+|+| ++++++|+.|+.|++|+.++..+
T Consensus        15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~   55 (328)
T PF12700_consen   15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD   55 (328)
T ss_dssp             EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred             EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence            44554  4567999999999 99999999999999999998654

...

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=89.97  E-value=0.21  Score=49.77  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeee
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTI  142 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~  142 (470)
                      ..|.|.+++|++||.|++||+|++++.-....
T Consensus         8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~a   39 (305)
T PF00529_consen    8 VGGIVTEILVKEGQRVKKGQVLARLDPTDYEA   39 (305)
T ss_dssp             S-EEEEEE-S-TTEEE-TTSECEEE--HHHHH
T ss_pred             CCeEEEEEEccCcCEEeCCCEEEEEEeeccch
Confidence            45999999999999999999999999654433

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=89.92  E-value=1.2  Score=49.38  Aligned_cols=34  Identities=24%  Similarity=0.400  Sum_probs=32.1

Q ss_pred             eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +|.||..|+|.++++++||.|+.||+|++++...
T Consensus       527 ~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK  560 (596)
T PRK14042        527 DITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK  560 (596)
T ss_pred             eEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence            5999999999999999999999999999998755

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=89.91  E-value=0.51  Score=49.34  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=41.8

Q ss_pred             eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ++.++.-..-.....|+.+ -..+|.++.+|+|.++.+++||.|+.||+|+.|+..
T Consensus        43 v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~   97 (385)
T PRK09578         43 VRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA   97 (385)
T ss_pred             EEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence            3334333333445667754 467899999999999999999999999999999654

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=89.82  E-value=0.38  Score=49.18  Aligned_cols=35  Identities=20%  Similarity=0.435  Sum_probs=32.7

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      .+.|.++.+|+|.++++++||.|+.|++|+.++..
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~   77 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA   77 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            66899999999999999999999999999999754

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=89.44  E-value=0.55  Score=50.32  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=36.6

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      |.-.+-.|++||+|++||+|++-... ....+.||.+|+|..|.
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~   81 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN   81 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence            55567899999999999999966533 57889999999999984

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=87.84  E-value=0.56  Score=49.34  Aligned_cols=43  Identities=21%  Similarity=0.296  Sum_probs=36.7

Q ss_pred             EEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          133 AQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       133 ~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|+. .-..+|.++.+|+|.++.+++||.|+.||+|+.|+..+
T Consensus        58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~  100 (397)
T PRK15030         58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT  100 (397)
T ss_pred             EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence            45553 44778999999999999999999999999999997543

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=87.48  E-value=0.57  Score=37.64  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=22.2

Q ss_pred             CceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766          110 ITDGTLAKFLKGPGDRVELDEPIAQIETDK  139 (470)
Q Consensus       110 ~~eg~I~~w~v~~Gd~V~~gd~l~evetdK  139 (470)
                      +..+.=+.++++.||.|++||+|++|=++.
T Consensus        28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   28 IDPAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            444555789999999999999999998764

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=87.46  E-value=0.76  Score=45.55  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=32.2

Q ss_pred             eeEecCCCeEEEE-------EeecCCCccCCCCeEEEEeeCCC
Q 036766          142 IDVASPEAGVIKE-------LVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       142 ~~i~ap~~G~l~~-------i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|.||..|++.+       +++++||.|..||+|+.|+...-
T Consensus       198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKm  240 (274)
T PLN02983        198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKL  240 (274)
T ss_pred             CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeece
Confidence            4589999999999       59999999999999999987654

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=87.15  E-value=0.66  Score=49.59  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=36.3

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      |.-.+-.|++||+|++||+|++.+ ......+.||.+|+|.+|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            344568899999999999999984 4468999999999998863

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=87.06  E-value=0.73  Score=47.31  Aligned_cols=54  Identities=13%  Similarity=0.196  Sum_probs=37.4

Q ss_pred             EEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       117 ~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..+|++||.|++|++|+|-- ---.+-+.||.+|+|..|+-  |+.=.--+++..++
T Consensus        42 ~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~R--G~KRvLqsVVI~~~   95 (447)
T COG1726          42 SMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHR--GEKRVLQSVVIKVE   95 (447)
T ss_pred             cceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeec--ccceeeeeEEEEec
Confidence            46799999999999999733 12356689999999999864  43322333444443

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=86.29  E-value=1.2  Score=50.30  Aligned_cols=43  Identities=23%  Similarity=0.461  Sum_probs=35.7

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      |.-.+..|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus        46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            445578899999999999999664 3367899999999998863

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=86.23  E-value=0.72  Score=42.35  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=25.0

Q ss_pred             CceEEEEEEEeCCCCeeeCCCcEEEEE
Q 036766          110 ITDGTLAKFLKGPGDRVELDEPIAQIE  136 (470)
Q Consensus       110 ~~eg~I~~w~v~~Gd~V~~gd~l~eve  136 (470)
                      -..|+|.+|+++.||.|+.||+|++|+
T Consensus       130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       130 EVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            368999999999999999999999985

The gene name is accB or fabE.

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=85.96  E-value=1.6  Score=40.63  Aligned_cols=19  Identities=32%  Similarity=0.490  Sum_probs=17.4

Q ss_pred             eecCCCccCCCCeEEEEee
Q 036766          156 VAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       156 ~v~eG~~v~~G~~l~~i~~  174 (470)
                      ++++||.|+.||+|+.++.
T Consensus       107 ~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439        107 IAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             EecCCCEEeCCCEEEEEcH
Confidence            7999999999999999974

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=85.79  E-value=1.3  Score=46.82  Aligned_cols=47  Identities=19%  Similarity=0.237  Sum_probs=38.2

Q ss_pred             CcEEEEEcCC-eeeeEecCCCeEEEEEe-ecCCCccCCCCeEEEEeeCC
Q 036766          130 EPIAQIETDK-VTIDVASPEAGVIKELV-AKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       130 d~l~evetdK-~~~~i~ap~~G~l~~i~-v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +..+.|+.+. -...|.++.+|+|.+++ +.+||.|+.||+|+.|+..+
T Consensus       111 ~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spe  159 (409)
T PRK09783        111 TFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD  159 (409)
T ss_pred             EEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHH
Confidence            3445666543 45679999999999998 99999999999999998543

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=85.44  E-value=2.3  Score=43.00  Aligned_cols=43  Identities=16%  Similarity=0.378  Sum_probs=26.8

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcC--CeeeeEecCCCeEEEEE
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETD--KVTIDVASPEAGVIKEL  155 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetd--K~~~~i~ap~~G~l~~i  155 (470)
                      +=+.+..++.||.|++||+|++|-.-  ....++.||.+|+|.-+
T Consensus       239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            44556667777777777777776531  12345677777777543

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=85.41  E-value=2.1  Score=37.87  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.4

Q ss_pred             EEeecCCCccCCCCeEEEEee
Q 036766          154 ELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       154 ~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      +.++++||.|+.||+|+.++.
T Consensus        83 ~~~vk~Gd~V~~G~~l~~~D~  103 (124)
T cd00210          83 TSHVEEGQRVKQGDKLLEFDL  103 (124)
T ss_pred             EEEecCCCEEcCCCEEEEEcH
Confidence            457999999999999999974

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=85.34  E-value=0.88  Score=41.69  Aligned_cols=26  Identities=31%  Similarity=0.565  Sum_probs=24.6

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEE
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIE  136 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~eve  136 (470)
                      .+|+|++|+++.||.|+.||+|++|+
T Consensus       130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        130 KSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            68999999999999999999999885

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=85.29  E-value=7.8  Score=40.09  Aligned_cols=28  Identities=25%  Similarity=0.468  Sum_probs=26.0

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETD  138 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  138 (470)
                      ..|+|.+++|++||+|+.|+.|+.|++.
T Consensus       122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen  122 ASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             CcceeeEEecCCCCcccCCceeEEecCC
Confidence            3599999999999999999999999976

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=85.15  E-value=2.2  Score=47.36  Aligned_cols=36  Identities=28%  Similarity=0.464  Sum_probs=32.8

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|.||.+|+|.++.+++|+.|+.|++|+.++...
T Consensus       522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamK  557 (592)
T PRK09282        522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMK  557 (592)
T ss_pred             CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence            357999999999999999999999999999997654

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=84.77  E-value=2.1  Score=47.59  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=32.8

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|.||..|+|.++++++||.|+.||+|+.++...
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK  559 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK  559 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence            447999999999999999999999999999997654

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=84.66  E-value=1.7  Score=38.89  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=14.6

Q ss_pred             eecCCCccCCCCeEEEEee
Q 036766          156 VAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       156 ~v~eG~~v~~G~~l~~i~~  174 (470)
                      ++++||.|+.||+|+.++.
T Consensus        89 ~v~~G~~V~~G~~L~~~D~  107 (132)
T PF00358_consen   89 LVKEGDKVKAGQPLIEFDL  107 (132)
T ss_dssp             SS-TTSEE-TTEEEEEE-H
T ss_pred             EEeCCCEEECCCEEEEEcH
Confidence            7899999999999999874

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=84.63  E-value=2.5  Score=42.18  Aligned_cols=61  Identities=30%  Similarity=0.431  Sum_probs=48.7

Q ss_pred             eEEEEEEEeCCCCeeeCCCcE--EEEEc--CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766          112 DGTLAKFLKGPGDRVELDEPI--AQIET--DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l--~evet--dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      .+-+....++.||.|++||+|  .++-.  +-...++.||.+|+|  +...+.-.|..|+.|+.+..
T Consensus       227 ~~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~  291 (292)
T PF04952_consen  227 AGGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK  291 (292)
T ss_dssp             SSEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred             ccEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence            355678999999999999999  54432  233568999999999  46778889999999998864

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics

Probab=84.60  E-value=12  Score=36.11  Aligned_cols=32  Identities=16%  Similarity=0.392  Sum_probs=26.5

Q ss_pred             EEEEEEecccccChHHHHHHHHHHHHHhhCHh
Q 036766          433 MYIALTYDHRLIDGREAVFFLRRIKDVVEEPR  464 (470)
Q Consensus       433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~  464 (470)
                      ..+-+.+||-++||.-...|+++|.+++++..
T Consensus       129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~  160 (301)
T PF00668_consen  129 YFLLISFHHIICDGWSLNILLRELLQAYAGLS  160 (301)
T ss_dssp             EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred             chhcccccccccccccchhhhhhhHHhhhccc
Confidence            45888999999999999999999999887654

This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=84.55  E-value=1.3  Score=49.15  Aligned_cols=36  Identities=28%  Similarity=0.422  Sum_probs=33.1

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      -.|.||..|.|.++++++||.|+.||+|+.++...-
T Consensus       518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKm  553 (582)
T TIGR01108       518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKM  553 (582)
T ss_pred             CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence            469999999999999999999999999999987654

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=84.00  E-value=2.5  Score=37.17  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=18.6

Q ss_pred             EEeecCCCccCCCCeEEEEee
Q 036766          154 ELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       154 ~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      +.++++||.|+.||+|+.++.
T Consensus        83 ~~~v~~Gd~V~~G~~l~~~D~  103 (121)
T TIGR00830        83 TSHVEEGQRVKKGDPLLEFDL  103 (121)
T ss_pred             EEEecCCCEEcCCCEEEEEcH
Confidence            557999999999999999974

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=83.85  E-value=2.5  Score=42.30  Aligned_cols=44  Identities=27%  Similarity=0.520  Sum_probs=35.7

Q ss_pred             cEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          131 PIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       131 ~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ....++. .-...+.++..|.|.++++++||.|+.|++|+.++..
T Consensus        57 ~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~  100 (372)
T COG0845          57 APGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS  100 (372)
T ss_pred             eeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence            3344444 3344788889999999999999999999999999873

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.70  E-value=2.2  Score=37.98  Aligned_cols=45  Identities=24%  Similarity=0.448  Sum_probs=38.6

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeee-EecCCCeEEEEE
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTID-VASPEAGVIKEL  155 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~-i~ap~~G~l~~i  155 (470)
                      .||-++--.+..|+.|.+||+++-+.|-|..+- +++|.+|++.-+
T Consensus        98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi  143 (161)
T COG4072          98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI  143 (161)
T ss_pred             cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence            478888888999999999999999999998877 789999988643

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=82.95  E-value=1.3  Score=47.49  Aligned_cols=28  Identities=32%  Similarity=0.510  Sum_probs=26.1

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETD  138 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  138 (470)
                      .+|+|.+|++++||.|..|++|+.|+.+
T Consensus       141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        141 ASGVIQEFLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence            6799999999999999999999999854

>PF13437 HlyD_3: HlyD family secretion protein

Probab=82.60  E-value=1.7  Score=36.25  Aligned_cols=28  Identities=29%  Similarity=0.502  Sum_probs=25.6

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETD  138 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetd  138 (470)
                      ..|.|..+.+++|+.|.+|++|++|...
T Consensus         6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    6 FDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            4699999999999999999999999853

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=82.60  E-value=2.2  Score=43.45  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=26.8

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK  139 (470)
                      ..|+|.++++++||.|..|++|+.|+.+.
T Consensus        52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         52 AAGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            57999999999999999999999998754

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=82.60  E-value=1.1  Score=36.81  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=19.1

Q ss_pred             EEEEEEeCCCCeeeCCCcEEEEEc
Q 036766          114 TLAKFLKGPGDRVELDEPIAQIET  137 (470)
Q Consensus       114 ~I~~w~v~~Gd~V~~gd~l~evet  137 (470)
                      -=++|++++|+.|++||+|++++-
T Consensus        45 ~~v~~~~~dG~~v~~g~~i~~i~G   68 (88)
T PF02749_consen   45 LEVEWLVKDGDRVEPGDVILEIEG   68 (88)
T ss_dssp             EEEEESS-TT-EEETTCEEEEEEE
T ss_pred             EEEEEEeCCCCCccCCcEEEEEEe
Confidence            345799999999999999999984

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=82.52  E-value=2.6  Score=38.70  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.5

Q ss_pred             EEeecCCCccCCCCeEEEEee
Q 036766          154 ELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       154 ~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      +.++++||.|+.||+|+.++-
T Consensus        90 ~~~v~~Gd~Vk~Gd~Li~fDl  110 (156)
T COG2190          90 ESLVKEGDKVKAGDPLLEFDL  110 (156)
T ss_pred             EEEeeCCCEEccCCEEEEECH
Confidence            448999999999999999974

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=82.21  E-value=2.4  Score=40.08  Aligned_cols=53  Identities=23%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEE
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIA  170 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~  170 (470)
                      +.|.. ++++|+.+++||.+.-++-. .++++--|.+   .++.+++|+.|..|+.|.
T Consensus       130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli  182 (189)
T TIGR00164       130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL  182 (189)
T ss_pred             cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence            44544 45899999999999999966 6666666765   277899999999999653

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=81.68  E-value=1.8  Score=45.81  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ..|.||++|+|..+.+.+|+.|..|++|+.|...
T Consensus       254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~  287 (421)
T TIGR03794       254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEVE  287 (421)
T ss_pred             CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEcc
Confidence            4699999999999999999999999999999543

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=81.56  E-value=1.2  Score=47.67  Aligned_cols=30  Identities=3%  Similarity=0.059  Sum_probs=26.5

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV  140 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~  140 (470)
                      ..|.|.+++|++||.|++||+|+.++....
T Consensus        66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~   95 (457)
T TIGR01000        66 SNNAIKENYLKENKFVKKGDLLVVYDNGNE   95 (457)
T ss_pred             CCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence            459999999999999999999999986543

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=81.44  E-value=1.3  Score=47.65  Aligned_cols=39  Identities=23%  Similarity=0.447  Sum_probs=35.8

Q ss_pred             EEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766          116 AKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus       116 ~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      ...+|++||+|.+||+|.+=+.  ....+.||.+|+|.+|.
T Consensus        45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            5778999999999999998885  88899999999999985

>PRK12784 hypothetical protein; Provisional

Probab=81.30  E-value=1.9  Score=34.68  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             Ceee-eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          139 KVTI-DVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       139 K~~~-~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      |..+ +|.||+-|+|.+++++|++.|-.=++|+.|...+.
T Consensus         2 k~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg   41 (84)
T PRK12784          2 KTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG   41 (84)
T ss_pred             ceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence            4444 48999999999999999999999999999988765

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=81.02  E-value=2.8  Score=40.23  Aligned_cols=55  Identities=25%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCC-eEEE
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGT-KIAV  171 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~-~l~~  171 (470)
                      .+.|+. ++++|+.+++||.+.-++-. .++++--|.+   .++.+++||.|..|+ +|+.
T Consensus       149 ~r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~  204 (206)
T PRK05305        149 ARRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR  204 (206)
T ss_pred             ccEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence            345554 46899999999999999976 5666666665   278899999999998 4544

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=80.64  E-value=1.2  Score=40.69  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=35.3

Q ss_pred             eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeec
Q 036766          120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK  158 (470)
Q Consensus       120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~  158 (470)
                      -++|-.|.+||.++-+|+=|+.-+|.+|.+|.|.+|.-+
T Consensus        88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~  126 (172)
T KOG3373|consen   88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEK  126 (172)
T ss_pred             CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccc
Confidence            367889999999999999999999999999999998643

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=80.55  E-value=3.7  Score=37.69  Aligned_cols=61  Identities=20%  Similarity=0.314  Sum_probs=38.4

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCee--------eeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVT--------IDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~--------~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      +|+--+-++++||+|++||+|+++.-+...        .-|-+-.+-+-.-.....+..+..|+.+..+
T Consensus        85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~  153 (156)
T COG2190          85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV  153 (156)
T ss_pred             CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence            588889999999999999999999876422        1122222222111222333367777777654

>PRK09294 acyltransferase PapA5; Provisional

Probab=80.50  E-value=38  Score=35.48  Aligned_cols=91  Identities=14%  Similarity=0.095  Sum_probs=49.1

Q ss_pred             cccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEec-------------CC--CeEEEEEEeCCCCCHHHH
Q 036766          296 KLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGT-------------SK--GLVVPVIRNADKMNFADI  360 (470)
Q Consensus       296 k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~-------------~~--GL~vpvI~~a~~~sl~ei  360 (470)
                      ++|++.+++-|++.++.+.-...    +.      .+.++++|+.             .+  |.+...+.-....+|.|+
T Consensus       229 ~~t~~~~l~Aa~~~~l~r~~~~~----~~------~i~~~~pv~~R~~l~p~~~~~~~~n~~g~~~~~~~~~~~~sf~el  298 (416)
T PRK09294        229 RLTVNALVSAAILLAEWQLRRTP----HV------PLPYVYPVDLRFRLTPPVAATEGTNLLGAATYLAEIGPDTDIVDL  298 (416)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCC----CC------ceeeecchhhHhhcCCCCCcccceeeEeeeeeeccccCCCCHHHH
Confidence            68999999999888877541110    00      1112222321             01  111111222345699999


Q ss_pred             HHHHHHHHHHHhc-CCCC--CCc----CCC------CeEEEEeCCCCCC
Q 036766          361 EKEINTLAKKAND-GSIS--IDE----MAG------GSFTISNGGVYGS  396 (470)
Q Consensus       361 ~~~i~~l~~~ar~-g~l~--~~d----~~g------gtftISnlG~~G~  396 (470)
                      ++++++..+...+ +.+.  ..+    +.+      .++++||+|.++.
T Consensus       299 a~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~~~~  347 (416)
T PRK09294        299 ARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGVAPP  347 (416)
T ss_pred             HHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCcCCC
Confidence            9999887664433 2211  011    111      3789999999964

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=80.39  E-value=2  Score=46.84  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=31.3

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      -.+.||..|+|..+.|++|++|..||+|++++..
T Consensus       576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAM  609 (645)
T COG4770         576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAM  609 (645)
T ss_pred             CceecCCCceEEEEEecCCCEecCCCeEEEeEeh
Confidence            3489999999999999999999999999999863

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=80.28  E-value=1.8  Score=45.78  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             CCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          147 PEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      -..|.|.++++++||.|+.||+|++|+++..
T Consensus        14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa   44 (404)
T COG0508          14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDKA   44 (404)
T ss_pred             cceEEEEEEecCCCCeecCCCeeEEEEcCce
Confidence            4589999999999999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	470
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		5e-73
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		3e-36
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		3e-36
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		2e-34
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		6e-27
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		4e-26
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		5e-26
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		9e-26
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		1e-25
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		4e-25
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		5e-25
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		9e-20
1ghj_A	79	Solution Structure Of The Lipoyl Domain Of The 2- O		4e-09
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		2e-08
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		2e-07
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		1e-05
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		1e-05
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		2e-05
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		7e-05

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score =  271 bits (694), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/230 (56%), Positives = 172/230 (74%)
Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
           E+RVPMTRLRKRVA RL +++N+ AMLTTFNEV+M  +M LR +Y +AF ++HG++LG M
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63
Query: 301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNADKMNFADI 360
           S +VKA V  L+  P +NA               S+AV T +GLV PV+R+ D +  ADI
Sbjct: 64  SFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI 123
Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
           EK+I  LA K  DG ++++++ GG+FTI+NGGV+GSL+STPIINPPQSAILGMH+I  RP
Sbjct: 124 EKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP 183
Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           M V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++E+P RLLLD+
Sbjct: 184 MAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score =  149 bits (377), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/234 (37%), Positives = 136/234 (58%), Gaps = 6/234 (2%)
Query: 237 PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVK 296
           P+ RE+   M+ +R+ +A  +  S++T   +T  +E D+T L+  R ++K    EK G+K
Sbjct: 13  PETREK---MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIK 68
Query: 297 LGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADK 354
           L  +   VKA VS L+  P++N                +I  A  T +GL+VPVI++AD+
Sbjct: 69  LTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADR 128
Query: 355 MNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMH 414
                + +EIN LA+KA DG ++  EM G S TI+N G  G    TP+IN P+ AILG+ 
Sbjct: 129 KPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIG 188
Query: 415 SIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
            I ++P+V  G +V  PM+ ++L++DHR+IDG  A   L  IK ++ +P  LL+
Sbjct: 189 RIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 3/231 (1%)
Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
           E R  M+ +R+ +A  +  S++T   +T  +E D+T L+  R ++K    EK G+KL  +
Sbjct: 198 ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIKLTFL 256
Query: 301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVG--TSKGLVVPVIRNADKMNFA 358
              VKA VS L+  P++N                +I +   T +GL+VPVI++AD+    
Sbjct: 257 PYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIF 316
Query: 359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
            + +EIN LA+KA DG ++  EM G S TI+N G  G    TP+IN P+ AILG+  I +
Sbjct: 317 ALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAE 376
Query: 419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLD 469
           +P+V  G +V  PM+ ++L++DHR+IDG  A   L  IK ++ +P  LL++
Sbjct: 377 KPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLME 427

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 127/222 (57%)
Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
           ++ +P+  +RK +A  +  S+          EVD T L++ R+  KD+F ++ G  L   
Sbjct: 18  DKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYF 77
Query: 301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNADKMNFADI 360
           + F+KA    L+  P +N+               SIA+     L VPVI+NAD+ +   I
Sbjct: 78  AFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGI 137
Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
            +EI+ LA KA +G +S  +M GG+FT+++ G +GS+ S  IIN PQ+AIL + SIV+RP
Sbjct: 138 AREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRP 197
Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEE 462
           +++   +  R M+ + L+ DHR++DG  A  FL+ IK  VE+
Sbjct: 198 VIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEK 239

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
           VPMTRL +  AT L  S      +T F   D+T L   R   K A  EK GVKL ++   
Sbjct: 18  VPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLTVLPLL 76
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNFADIE 361
           +KA    L+  P  N+                I  AV T  GL+VPVIRN D+ +   + 
Sbjct: 77  LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136
Query: 362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPM 421
            E   LA+KA    +  D M G  FTIS+ G  G    TPI+N P+ AILG+     +P+
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196
Query: 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
             G    PR M+ ++L+YDHR+IDG  A  F +R+ D++ + R +LL
Sbjct: 197 WDGKAFQPRLMLPLSLSYDHRVIDGAAAARFTKRLGDLLADIRAILL 243

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 15/233 (6%)
Query: 240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299
           RE  + M  LR+ +  ++  ++      T   EVD+T+++ +    K         K+ +
Sbjct: 5   REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-----ARNRKVTV 59
Query: 300 MSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNF 357
                +   S L+  P +NA+              +I  AV T  GL V VI++AD+ + 
Sbjct: 60  TGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSM 119
Query: 358 ADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 417
            +I  EI+  A +A +  + +DE+   +FTI+N G  G ++STPIIN P+ AILG+H I+
Sbjct: 120 VEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRIL 179
Query: 418 QRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           +R          R  MY++L+ DHRLIDG  A  F+  +K V+E+P  ++ +I
Sbjct: 180 ERE--------GRKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
           VPMTRL +  AT L  S      +T F   D+T L   R   K A  EK GVKL ++   
Sbjct: 18  VPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLTVLPLL 76
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNFADIE 361
           +KA    L+  P  N+                I  AV T  GL+VPVIRN D+ +   + 
Sbjct: 77  LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136
Query: 362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPM 421
            E   LA+KA    +  D M G  FTI++ G  G    TPI+N P+ AILG+     +P+
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196
Query: 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
             G    PR M+ ++L+YDHR+I+G  A  F +R+ D++ + R +LL
Sbjct: 197 WDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 243

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
           VPMTRL +  AT L  S      +T F   D+T L   R   K A  +K GVKL ++   
Sbjct: 18  VPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAKKAGVKLTVLPLL 76
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNFADIE 361
           +KA    L+  P  N+                I  AV T  GL+VPVIRN D+ +   + 
Sbjct: 77  LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136
Query: 362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPM 421
            E   LA+KA    +  D M G  FTIS+ G  G    TPI+N P+ AILG+     +P+
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196
Query: 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
             G    PR M+ ++L+YDHR+I+G  A  F +R+ D++ + R +LL
Sbjct: 197 WDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 243

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 245 PMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFV 304
           P+  +  R+A ++  S           EV    L++LR  +  A  E     L L     
Sbjct: 18  PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTL----- 72
Query: 305 KAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVG----TSKGLVVPVIRNADKMNFADI 360
           +  V  L++  I+N+                + +G    T +GL+VPV+ +A   N  ++
Sbjct: 73  RLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTREL 132
Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
              +  L   A +G+++  E+ G +FT+SN G  G     P+IN P++AILG+ +I  RP
Sbjct: 133 ASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRP 192
Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           +VVGG VV RP M +   +DHR++DG +   F+  ++D++E P   LLD+
Sbjct: 193 VVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 115/227 (50%), Gaps = 3/227 (1%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
           VPMTRL +  AT L  S      +T F   D+T L   R   K A  EK GVKL ++   
Sbjct: 18  VPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLTVLPLL 76
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNFADIE 361
           +KA    L+  P  N+                I  AV T  GL+VPVIRN D+ +   + 
Sbjct: 77  LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136
Query: 362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPM 421
            E   LA+KA    +  D M G  FTIS+ G  G    TPI+N P+ AILG+     +P+
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196
Query: 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
             G    PR M+ ++L+YD R+I+G  A  F +R+ D++ + R +LL
Sbjct: 197 WDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 4/203 (1%)
Query: 271 NEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXX 330
           +EVD+T L+KLR E K     + G+KL  M  F+KAA  GL   PI+NA           
Sbjct: 60  DEVDLTELVKLREELKPIAFAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITY 118
Query: 331 XXXXSI--AVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTI 388
               +I  A+ T +GL+VP ++N    +  +I  E+N L K  + G +S +++ GG+FT+
Sbjct: 119 KASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTL 178
Query: 389 SNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMV-VGGNVVPRPMMYIALTYDHRLIDGR 447
           SN G  G   + P+I PP+ AI  + +I   P     G V    +M ++ + DHR+IDG 
Sbjct: 179 SNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGA 238
Query: 448 EAVFFLRRIKDVVEEPRRLLLDI 470
               F    K  +E P  +LLD+
Sbjct: 239 TVSRFSNLWKSYLENPAFMLLDL 261

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 8/229 (3%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
           +P++ +R+ +A RL  S+ T        +V+M  ++ +R E  +  LE    K+ +    
Sbjct: 15  IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKEL-NKILEGRS-KISVNDFI 72
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNADKMNFADIEKE 363
           +KA+       P  N+               S+AV T  GL+ P++ NA       I  +
Sbjct: 73  IKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAND 132
Query: 364 INTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHS----IVQR 419
           + +LA KA +G +   E  GG+FTISN G++G    + IINPPQ+ IL + +    +V  
Sbjct: 133 VVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPA 192
Query: 420 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
               G +V    MM + L+ DHR++DG     +L   +  +E+P  +LL
Sbjct: 193 DNEKGFDVA--SMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239

>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           +D   P   ESI DGT+A + K PG+ V+ DE I  IETDKV ++V +   GVI E+V  
Sbjct: 2   IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Query: 159 EGETVEPGTKIAVISKSG 176
           EG+TV  G  +  +++ G
Sbjct: 62  EGDTVLSGELLGKLTEGG 79

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 341 SKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLST 400
           ++ LVV  I+  + M F         + ++A DG ++ ++ +G + +++N G  G++ S 
Sbjct: 94  NRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSV 153
Query: 401 PIINPPQSAILGMHSIVQRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFL 453
           P +   Q AI+G  ++ + P    G    R        ++ +  TYDHR+I G E+  FL
Sbjct: 154 PRLMQGQGAIIGAGAM-EYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFL 212
Query: 454 RRIKDVVEEPRRLLLD 469
           R I        +LLLD
Sbjct: 213 RTI-------HQLLLD 221

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           VD +VP + ES+ D T+A + K PGD V  DE + +IETDKV ++V +   G++  ++  
Sbjct: 3   VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62
Query: 159 EGETV 163
           EG TV
Sbjct: 63  EGTTV 67

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           +P +GE I +G + K+   PGD V  D+ + +++ DK  +++ SP  G + E++  EG  
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Query: 163 VEPGTKIAVISKSG 176
              G  +  +   G
Sbjct: 66  ATVGQTLITLDAPG 79

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           +P +GE +T+G + ++    GD VE D+ + ++ TDKVT+ + SP  G I +++ +EG+ 
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 163 VEPGTKIAVIS 173
           V  G+ +  I 
Sbjct: 66  VPVGSTLLQID 76

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 93  SEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVI 152
           S G   +  ++P +  ++ +G + K+LK  G+ V   + + +IETDK  + + + + G++
Sbjct: 2   SSGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGIL 61
Query: 153 KELVAKEG-ETVEPGTKIAVISKSGEGVAHV 182
            ++V +EG + +  G+ I +I + GE   HV
Sbjct: 62  AKIVVEEGSKNIRLGSLIGLIVEEGEDWKHV 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	470
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	1e-164
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	1e-164
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	1e-149
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	1e-131
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	1e-124
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	1e-110
2ii3_A	262	Lipoamide acyltransferase component of branched-C	1e-106
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	7e-92
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	2e-29
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	1e-28
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	8e-28
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	1e-27
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	5e-25
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	6e-22
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	3e-21
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	1e-20
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	2e-15
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	3e-15
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	7e-14
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	9e-14
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	6e-13
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	2e-12
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	4e-12
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	7e-12
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	2e-11
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	3e-11
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	4e-11
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	2e-08
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	3e-08
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	2e-06
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	4e-06
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	6e-06
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	9e-06
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	2e-05
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	3e-05
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	8e-05
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	1e-04
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	6e-04

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  462 bits (1192), Expect = e-164
 Identities = 139/231 (60%), Positives = 184/231 (79%)

Query: 240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299
            E+RVPMTRLRKRVA RL +++N+ AMLTTFNEV+M  +M LR +Y +AF ++HG++LG 
Sbjct: 3   SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62

Query: 300 MSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFAD 359
           MS +VKA V  L+  P +NA IDGDD++Y +Y D+S+AV T +GLV PV+R+ D +  AD
Sbjct: 63  MSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122

Query: 360 IEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQR 419
           IEK+I  LA K  DG ++++++ GG+FTI+NGGV+GSL+STPIINPPQSAILGMH+I  R
Sbjct: 123 IEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDR 182

Query: 420 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           PM V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++E+P RLLLD+
Sbjct: 183 PMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  469 bits (1209), Expect = e-164
 Identities = 118/426 (27%), Positives = 198/426 (46%), Gaps = 56/426 (13%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
            +  +P +GE I +G + K+   PGD V  D+ + +++ DK  +++ SP  G + E++  
Sbjct: 3   FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP 62

Query: 159 EGETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVET----- 213
           EG     G  +  +   G         E+   K   K  +  K ++              
Sbjct: 63  EGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAE 122

Query: 214 --------------------------------------------VSEKPKAPSPPPPKRT 229
                                                       ++   K       ++ 
Sbjct: 123 AGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKA 182

Query: 230 ATEPQLPP----KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEY 285
           A     P     +  E R  M+ +R+ +A  +  S++T   +T  +E D+T L+  R ++
Sbjct: 183 APAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKF 242

Query: 286 KDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGD--DIIYRDYIDISIAVGTSKG 343
           K     + G+KL  +   VKA VS L+  P++N  ID +  +II + Y +I IA  T +G
Sbjct: 243 KAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRG 301

Query: 344 LVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPII 403
           L+VPVI++AD+     + +EIN LA+KA DG ++  EM G S TI+N G  G    TP+I
Sbjct: 302 LLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVI 361

Query: 404 NPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEP 463
           N P+ AILG+  I ++P+V  G +V  PM+ ++L++DHR+IDG  A   L  IK ++ +P
Sbjct: 362 NHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDP 421

Query: 464 RRLLLD 469
             LL++
Sbjct: 422 ELLLME 427

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  425 bits (1094), Expect = e-149
 Identities = 90/252 (35%), Positives = 143/252 (56%), Gaps = 10/252 (3%)

Query: 214 VSEKPKAPSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEV 273
           +S K   P+PP          +     ++ +P+  +RK +A  +  S+          EV
Sbjct: 1   MSLKAAMPTPP----------VRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEV 50

Query: 274 DMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYID 333
           D T L++ R+  KD+F ++ G  L   + F+KA    L+  P +N+   GD II    I+
Sbjct: 51  DATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANIN 110

Query: 334 ISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGV 393
           ISIA+     L VPVI+NAD+ +   I +EI+ LA KA +G +S  +M GG+FT+++ G 
Sbjct: 111 ISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGS 170

Query: 394 YGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFL 453
           +GS+ S  IIN PQ+AIL + SIV+RP+++   +  R M+ + L+ DHR++DG  A  FL
Sbjct: 171 FGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFL 230

Query: 454 RRIKDVVEEPRR 465
           + IK  VE+  +
Sbjct: 231 QAIKANVEKISK 242

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  377 bits (970), Expect = e-131
 Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 15/233 (6%)

Query: 240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299
           RE  + M  LR+ +  ++  ++      T   EVD+T+++ +    K         K+ +
Sbjct: 5   REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-----ARNRKVTV 59

Query: 300 MSGFVKAAVSGLQNQPIINAVIDGDD--IIYRDYIDISIAVGTSKGLVVPVIRNADKMNF 357
                +   S L+  P +NA+ D      I + Y +I IAV T  GL V VI++AD+ + 
Sbjct: 60  TGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSM 119

Query: 358 ADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 417
            +I  EI+  A +A +  + +DE+   +FTI+N G  G ++STPIIN P+ AILG+H I+
Sbjct: 120 VEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRIL 179

Query: 418 QRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           +R          R  MY++L+ DHRLIDG  A  F+  +K V+E+P  ++ +I
Sbjct: 180 ERE--------GRKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  360 bits (925), Expect = e-124
 Identities = 65/246 (26%), Positives = 118/246 (47%), Gaps = 9/246 (3%)

Query: 229 TATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDA 288
           +    +          P+  +  R+A ++  S           EV    L++LR  +   
Sbjct: 2   SLAAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS- 60

Query: 289 FLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID----GDDIIYRDYIDISIAVGTSKGL 344
                  ++   +  ++  V  L++  I+N+       G  +     + +     T +GL
Sbjct: 61  ----AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGL 116

Query: 345 VVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIIN 404
           +VPV+ +A   N  ++   +  L   A +G+++  E+ G +FT+SN G  G     P+IN
Sbjct: 117 LVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVIN 176

Query: 405 PPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPR 464
            P++AILG+ +I  RP+VVGG VV RP M +   +DHR++DG +   F+  ++D++E P 
Sbjct: 177 HPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPE 236

Query: 465 RLLLDI 470
             LLD+
Sbjct: 237 TALLDL 242

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  325 bits (835), Expect = e-110
 Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 8/243 (3%)

Query: 233 PQLPPKE-----RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKD 287
           P +PP +         VPMTRL +  AT L  S      +T F   D+T L   R   K 
Sbjct: 2   PPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKA 61

Query: 288 AFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--GDDIIYRDYIDISIAVGTSKGLV 345
              EK GVKL ++   +KA    L+  P  N+ +   G  +I + Y+ I  AV T  GL+
Sbjct: 62  VA-EKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120

Query: 346 VPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINP 405
           VPVIRN D+ +   +  E   LA+KA    +  D M G  FTIS+ G  G    TPI+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180

Query: 406 PQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRR 465
           P+ AILG+     +P+  G    PR M+ ++L+YD R+I+G  A  F +R+ D++ + R 
Sbjct: 181 PEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRA 240

Query: 466 LLL 468
           +LL
Sbjct: 241 ILL 243

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  316 bits (811), Expect = e-106
 Identities = 83/266 (31%), Positives = 130/266 (48%), Gaps = 9/266 (3%)

Query: 208 QPKVETVSEKPKAPSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAML 267
             ++     KPK  + P P             ++R  P+    K +   +  +       
Sbjct: 2   HAEIMPPPPKPKDRTIPIPISKPPVFI----GKDRTEPVKGFHKAMVKTMSAALKI-PHF 56

Query: 268 TTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--GDD 325
              +EVD+T L+KLR E K       G+KL  M  F+KAA  GL   PI+NA +D    +
Sbjct: 57  GYCDEVDLTELVKLREELKPIA-FARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQN 115

Query: 326 IIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGS 385
           I Y+   +I IA+ T +GL+VP ++N    +  +I  E+N L K  + G +S +++ GG+
Sbjct: 116 ITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGT 175

Query: 386 FTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVG-GNVVPRPMMYIALTYDHRLI 444
           FT+SN G  G   + P+I PP+ AI  + +I   P     G V    +M ++ + DHR+I
Sbjct: 176 FTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRII 235

Query: 445 DGREAVFFLRRIKDVVEEPRRLLLDI 470
           DG     F    K  +E P  +LLD+
Sbjct: 236 DGATVSRFSNLWKSYLENPAFMLLDL 261

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  277 bits (712), Expect = 7e-92
 Identities = 67/251 (26%), Positives = 114/251 (45%), Gaps = 14/251 (5%)

Query: 220 APSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLM 279
            P   P           P      +P++ +R+ +A RL  S+ T        +V+M  ++
Sbjct: 1   GPGMAPV----------PTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVL 50

Query: 280 KLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVG 339
            +R E       +   K+ +    +KA+       P  N+      I     +D+S+AV 
Sbjct: 51  LVRKELNKIL--EGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVS 108

Query: 340 TSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLS 399
           T  GL+ P++ NA       I  ++ +LA KA +G +   E  GG+FTISN G++G    
Sbjct: 109 TPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF 168

Query: 400 TPIINPPQSAILGMHSIVQRPMVVGGN--VVPRPMMYIALTYDHRLIDGREAVFFLRRIK 457
           + IINPPQ+ IL + +   + +            MM + L+ DHR++DG     +L   +
Sbjct: 169 SAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFR 228

Query: 458 DVVEEPRRLLL 468
             +E+P  +LL
Sbjct: 229 KYLEKPITMLL 239

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score =  113 bits (284), Expect = 2e-29
 Identities = 21/201 (10%), Positives = 55/201 (27%), Gaps = 22/201 (10%)

Query: 268 TTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDII 327
               ++D+T  +K         ++K+  K      F+      +   P     +   +++
Sbjct: 34  NQTVQLDITAFLK--------TVKKNKHKFYPA--FIHILARLMNAHPEFRMAMKDGELV 83

Query: 328 YRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDG-SISIDEMAGGSF 386
             D +     V   +      + +    +F       +       +  +          F
Sbjct: 84  IWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMF 143

Query: 387 TISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRP---MMYIALTYDHRL 443
            +S             +    +           P+   G    +    +M +A+   H +
Sbjct: 144 FVSANPWVSFTSFDLNVANMDNFFA--------PVFTMGKYYTQGDKVLMPLAIQVHHAV 195

Query: 444 IDGREAVFFLRRIKDVVEEPR 464
            DG      L  ++   +E +
Sbjct: 196 CDGFHVGRMLNELQQYCDEWQ 216

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score =  106 bits (268), Expect = 1e-28
 Identities = 34/78 (43%), Positives = 48/78 (61%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           +D   P   ESI DGT+A + K PG+ V+ DE I  IETDKV ++V +   GVI E+V  
Sbjct: 2   IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61

Query: 159 EGETVEPGTKIAVISKSG 176
           EG+TV  G  +  +++ G
Sbjct: 62  EGDTVLSGELLGKLTEGG 79

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score =  104 bits (262), Expect = 8e-28
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           VD +VP + ES+ D T+A + K PGD V  DE + +IETDKV ++V +   G++  ++  
Sbjct: 3   VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62

Query: 159 EGETVEPGTKIAVIS 173
           EG TV     +  + 
Sbjct: 63  EGTTVTSRQILGRLR 77

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score =  109 bits (272), Expect = 1e-27
 Identities = 20/205 (9%), Positives = 56/205 (27%), Gaps = 23/205 (11%)

Query: 266 MLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDD 325
             +  +++D+T L K   +    F              +      +     +   I  D+
Sbjct: 27  GFSLTSKIDITTLKKSLDDSAYKFY----------PVMIYLIAQAVNQFDELRMAIKDDE 76

Query: 326 IIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGS 385
           +I  D +D    V   +      +      +         ++ ++    +    +     
Sbjct: 77  LIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPE 136

Query: 386 --FTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVV---PRPMMYIALTYD 440
               IS             +                P++          R ++ +++   
Sbjct: 137 NHLNISALPWVNFDSFNLNVANFTDYFA--------PIITMAKYQQEGDRLLLPLSVQVH 188

Query: 441 HRLIDGREAVFFLRRIKDVVEEPRR 465
           H + DG     F+ R++++     +
Sbjct: 189 HAVCDGFHVARFINRLQELCNSKLK 213

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 88.4 bits (220), Expect = 6e-22
 Identities = 24/70 (34%), Positives = 44/70 (62%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           +P +GE +T+G + ++    GD VE D+ + ++ TDKVT+ + SP  G I +++ +EG+ 
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65

Query: 163 VEPGTKIAVI 172
           V  G+ +  I
Sbjct: 66  VPVGSTLLQI 75

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 87.0 bits (216), Expect = 3e-21
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 96  GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKEL 155
           G +V   +  +GE I + T+ ++    GD V   + I ++++DK ++ + S   GVIK+L
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 156 VAKEGETVEPGTKIAVISKSGEG 178
                +    G  +  I      
Sbjct: 62  YYNLDDIAYVGKPLVDIETEALK 84

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 89.4 bits (221), Expect = 1e-20
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 29/201 (14%)

Query: 272 EVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDD-IIYRD 330
           EV+     +          +  G    L   ++ A +      P     ID D  ++  D
Sbjct: 35  EVECGGARQ--------RAKAAGQSFFLH--YLYAVLRAANEIPEFRYRIDPDGRVVLYD 84

Query: 331 YIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGS-------ISIDEMAG 383
            ID+   +   +       R     +F    +E   +     +           + +   
Sbjct: 85  TIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDY 144

Query: 384 GSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVP---RPMMYIALTYD 440
           G   +S          T                   P++  G  +    R +M IA+T  
Sbjct: 145 GLILLSATPDLYFTSITGTQEKRSGNNY--------PLLNAGKAIIREGRLVMPIAMTIH 196

Query: 441 HRLIDGREAVFFLRRIKDVVE 461
           H  IDG     F ++++D ++
Sbjct: 197 HGFIDGHHLSLFYKKVEDFLK 217

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG-ETVEPGTKI 169
             GT+A++ K  GD++   + IA++ETDK T+   S E   + +++  EG   V  G  I
Sbjct: 20  QAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAII 79

Query: 170 AVISKSGEGVAHVAPSEKIPEKAAPKPPSA 199
            +     E +     +  +   AA  P S 
Sbjct: 80  CITVGKPEDIEAFK-NYTLDSSAASGPSSG 108

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG-ETVEPGTKI 169
           T GT+ ++ K  G+++   + +A+IETDK TI     E G + +++  EG   V  GT +
Sbjct: 40  TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPL 99

Query: 170 AVISKSGEGVAHVAPSEKIPEKAAPKPPSA 199
            +I +    ++  A ++  P +     P  
Sbjct: 100 CIIVEKEADIS--AFADYRPTEVTDLKPQV 127

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 66.1 bits (162), Expect = 7e-14
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG-ETVEPGTKI 169
            +G + K+LK  G+ V   + + +IETDK  + + + + G++ ++V +EG + +  G+ I
Sbjct: 20  EEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLI 79

Query: 170 AVISKSGEGVAHVA 183
            +I + GE   HV+
Sbjct: 80  GLIVEEGEDWKHVS 93

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 73.0 bits (180), Expect = 9e-14
 Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 17/174 (9%)

Query: 306 AAVSGLQNQPIIN---AVIDGD-DIIYRDYIDISIAVGT-----SKGLVVPVIRNADKMN 356
           A V  ++  P +N   AV+DG    I   + ++ +A+       ++ LVV  I+  + M 
Sbjct: 50  AIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMR 109

Query: 357 FADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSI 416
           F         + ++A DG ++ ++ +G + +++N G  G++ S P +   Q AI+G  ++
Sbjct: 110 FGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAM 169

Query: 417 VQRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFLRRIKDVVEEP 463
            + P    G    R        ++ +  TYDHR+I G E+  FLR I  ++ + 
Sbjct: 170 -EYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDD 222

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 63.5 bits (155), Expect = 6e-13
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           G L ++    G  VE     A++E  K+ + +   E G +K  + + G  +E G  +A +
Sbjct: 14  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARL 72

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 109 SITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTK 168
           S + G L ++    G  VE     A++E  K+ + +   E G +K  + + G  +E G  
Sbjct: 22  SPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCV 80

Query: 169 IAVI 172
           +A +
Sbjct: 81  VARL 84

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 60.8 bits (148), Expect = 4e-12
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 122 PGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVAH 181
            GD+V  ++ +  +E DK +++V +P AGV+KEL    G+ V+ G+ I +    G   A 
Sbjct: 20  VGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAA 79

Query: 182 VAPSEK 187
               ++
Sbjct: 80  APAKQE 85

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG-ETVEPGTKI 169
           T GT+ ++ K  G+++   + +A+IETD  TI     E G + +++  EG   V  GT +
Sbjct: 18  TMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPL 77

Query: 170 AVISKSGEGV 179
            +I +    +
Sbjct: 78  CIIVEKEADI 87

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 122 PGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 178
            GD + +D+ +  +ETDK T+DV +  AGV+KE+  K G+ +  G  I V+   G  
Sbjct: 25  VGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTA 81

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query: 122 PGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 178
            GD +E+++ +  +E+ K +++V SP+AGV+K +  K G+ ++ G  I  +  +   
Sbjct: 22  TGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA 78

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 122 PGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 178
            GD+V  ++ +  +E DK +++V +P AGV+KEL    G+ V+ G+ I +    G  
Sbjct: 24  VGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAA 80

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           G L K     GD++E  + +A +E+ K+ I + +  +G++KE+  KEG+ V  G  +  +
Sbjct: 8   GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67

Query: 173 SKSGE 177
           S S +
Sbjct: 68  SNSTQ 72

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 113  GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
            G   K +   GD VE  + +  IE  K  + V + ++G + +++ K G+ VE G  +AVI
Sbjct: 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 16/65 (24%), Positives = 34/65 (52%)

Query: 113  GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
            G++ +     G+ V+ ++P+   E  K+   + +P  GVIK++    G+T+  G  +  I
Sbjct: 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEI 1145

Query: 173  SKSGE 177
             K+ +
Sbjct: 1146 EKATD 1150

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           G +       G +V   +P+  +   K+   V SP  G ++++   +  T+E    I  I
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           G + + L   GDRV + + +  +E  K+  ++ SP  GV+K ++ KEGE V+ G  +  +
Sbjct: 14  GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 70/231 (30%)

Query: 128 LDEPIAQIE-TDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVAHVAPSE 186
           +D    + +   K  + V       +     K+   V+   K +++SK  E + H+    
Sbjct: 7   MDFETGEHQYQYKDILSVFEDA--FVDNFDCKD---VQDMPK-SILSK--EEIDHII-MS 57

Query: 187 KIPEKAA--------PKPPS-AEKAKEDKPQPK----VETVSEKPKAPSPPPPK------ 227
           K               K     +K  E+  +      +  +  + + PS           
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 228 RTATEPQ-LPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYK 286
           R   + Q        R  P  +LR+                          L++LR   K
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQ-------------------------ALLELRPA-K 151

Query: 287 DAFLEKHGVKLGLMSGFVKA--AVSGLQNQPIINAVIDGDDIIYRDYIDIS 335
           +  +   G     + G  K   A+    +  +   +      I+  ++++ 
Sbjct: 152 NVLI--DG-----VLGSGKTWVALDVCLSYKVQCKMDFK---IF--WLNLK 190

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           GT++K L   GD V+  + +  +E  K+  ++ +P  G +++++ KE + V+ G  +  I
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           GT+ K     GD+V+  + +  +   K+   + SP+ G +K++  +EG      T +   
Sbjct: 23  GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEF 82

Query: 173 SKSGE 177
            +   
Sbjct: 83  EEEES 87

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           G +      PGD V   + I  IE  K+   + + + G +K +  + G+TV  G  +  +
Sbjct: 34  GVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 113  GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
            G +++     G  V   + +  IE  K+   + + + G I E++ K G+ ++    +AV 
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVY 1163

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           G + K     G  V+  + +  IE  K+   + + + GV+ ++ A  G ++     I   
Sbjct: 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 16/61 (26%), Positives = 23/61 (37%)

Query: 179 VAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPPPPKRTATEPQLPPK 238
           V  V P++  P +A   PP      E +P+P  E   E P     P PK       +   
Sbjct: 37  VTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 96

Query: 239 E 239
           +
Sbjct: 97  Q 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	100.0
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	100.0
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	100.0
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.78
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.78
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.78
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.77
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.75
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.71
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.68
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.66
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.66
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.66
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.61
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.58
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.48
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.37
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.36
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.31
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.3
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.26
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.24
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.24
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.22
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.13
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.06
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.04
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.03
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.79
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.77
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.76
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.71
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.3
1hpc_A	131	H protein of the glycine cleavage system; transit	98.23
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.19
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.84
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.82
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.8
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.75
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.55
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.47
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.42
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.35
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.04
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.04
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	96.57
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	96.44
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	96.36
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	96.12
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.06
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	95.93
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	95.9
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	95.5
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	95.1
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	95.06
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	94.64
2qj8_A	332	MLR6093 protein; structural genomics, joint center	94.58
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	94.3
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	94.2
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	94.02
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	93.86
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	93.86
2xha_A	193	NUSG, transcription antitermination protein NUSG;	93.68
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	93.06
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	93.02
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	92.21
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	92.12
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	92.06
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	92.02
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	91.87
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	91.64
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	91.6
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	91.04
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	90.98
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	90.9
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	90.35
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	89.98
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	89.36
2xha_A	193	NUSG, transcription antitermination protein NUSG;	88.49
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	88.15
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	88.01
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	87.56
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	86.58
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	85.92
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	85.87
3our_B	183	EIIA, phosphotransferase system IIA component; exh	85.15
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	81.2
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	80.64
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	80.59

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=1.4e-81  Score=657.64  Aligned_cols=373  Identities=31%  Similarity=0.531  Sum_probs=2.8

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      |.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.++
T Consensus         1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (428)
T 3dva_I            1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   80 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCC--C--CC---CCCC-CCCCC---CCCcc-----cccC----CCCCCccccc---------------cC----C
Q 036766          177 EGVAHVA--P--SE---KIPE-KAAPK---PPSAE-----KAKE----DKPQPKVETV---------------SE----K  217 (470)
Q Consensus       177 ~~~~~~~--~--~~---~~~~-~~a~~---~~~~~-----~~~~----~~~~~~~~~~---------------~~----~  217 (470)
                      ++.....  +  .+   ..+. .+++.   ++.+.     ....    ....|.+++.               +.    +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k  160 (428)
T 3dva_I           81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK  160 (428)
T ss_dssp             -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred             ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence            4321110  0  00   0000 00000   00000     0000    0112222210               00    0


Q ss_pred             CCCCCC--------CCCC--CCCCCCCC----CCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHH
Q 036766          218 PKAPSP--------PPPK--RTATEPQL----PPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRS  283 (470)
Q Consensus       218 ~~~~a~--------~~~~--~~~~~~~~----~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk  283 (470)
                      .+..+.        +.+.  .....+..    .....++++||++|||+||++|.+|++++||||++.+||||+|+++|+
T Consensus       161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk  240 (428)
T 3dva_I          161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK  240 (428)
T ss_dssp             TTTTTTSCC-----------------------------------------------------------------------
T ss_pred             HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence            111000        0000  00000000    011235789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHH
Q 036766          284 EYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIE  361 (470)
Q Consensus       284 ~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~  361 (470)
                      ++|+.+ ++.|.|+||++||+||+++||++||+||++|++  ++|++|+++|||+||++++||++|||+++++++|.+|+
T Consensus       241 ~~~~~~-~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia  319 (428)
T 3dva_I          241 KFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALA  319 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhhhH-hhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHH
Confidence            998653 356899999999999999999999999999987  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecc
Q 036766          362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDH  441 (470)
Q Consensus       362 ~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DH  441 (470)
                      ++++++++++|+|+|.++|++||||||||+||+|+++|+||||+||++||++|++.++|++.+|++.+|++|||||+|||
T Consensus       320 ~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~m~lsls~DH  399 (428)
T 3dva_I          320 QEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDH  399 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeeeEEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766          442 RLIDGREAVFFLRRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       442 RviDG~~aa~Fl~~l~~~Le~P~~lll~~  470 (470)
                      |+|||+|+++||++|+++||||+.|||+.
T Consensus       400 RviDG~~aa~Fl~~lk~~Le~P~~lll~~  428 (428)
T 3dva_I          400 RMIDGATAQKALNHIKRLLSDPELLLMEA  428 (428)
T ss_dssp             -----------------------------
T ss_pred             cccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence            99999999999999999999999999873

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=5.7e-64  Score=485.66  Aligned_cols=230  Identities=60%  Similarity=1.029  Sum_probs=223.5

Q ss_pred             cceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceE
Q 036766          241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAV  320 (470)
Q Consensus       241 ~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~  320 (470)
                      ++++|++++||+||++|.+|++++|||+++.++|+|+|+++|+++|+.+.++.|.++||+++++||+++||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            45689999999999999999999999999999999999999999988766677899999999999999999999999999


Q ss_pred             EeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcc
Q 036766          321 IDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLST  400 (470)
Q Consensus       321 i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~t  400 (470)
                      |+++++++++++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|+++|++||||||||+||+|+.+|+
T Consensus        84 ~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~t  163 (233)
T 1scz_A           84 IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMST  163 (233)
T ss_dssp             EETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCC
T ss_pred             EeCCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766          401 PIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       401 pii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~  470 (470)
                      |||||||+|||++|++.++|++.+|+++++++|||||+||||+|||+++|+||++|+++||+|+.||+++
T Consensus       164 pIin~pq~aIl~vG~~~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~~~  233 (233)
T 1scz_A          164 PIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV  233 (233)
T ss_dssp             CCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred             cccCCCCcEEEEccccEEEEEEECCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998864

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=5.7e-64  Score=490.90  Aligned_cols=231  Identities=37%  Similarity=0.575  Sum_probs=224.2

Q ss_pred             CCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCcc
Q 036766          238 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPII  317 (470)
Q Consensus       238 ~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~l  317 (470)
                      ...++++|++++||+||++|.+|++++||||++.+||+|+|+++|+++|+.+.++.|.++||+++++||+++||++||+|
T Consensus        15 ~~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~   94 (256)
T 3mae_A           15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQL   94 (256)
T ss_dssp             CCSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTT
T ss_pred             CCCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHh
Confidence            45578899999999999999999999999999999999999999999998777777899999999999999999999999


Q ss_pred             ceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766          318 NAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL  397 (470)
Q Consensus       318 N~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~  397 (470)
                      |++|+++++++++++|||+||++++||++|||+++++++|.||+++++++++++|+|+|.++|++||||||||+||+|++
T Consensus        95 Na~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~  174 (256)
T 3mae_A           95 NSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSV  174 (256)
T ss_dssp             SEEEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCS
T ss_pred             hhEEecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      +|+|||||||++||++|++.++|++.+|++++|++|+|||+||||+|||+++|+||++|+++||+|+.|..
T Consensus       175 ~ftpIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~~  245 (256)
T 3mae_A          175 QSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENT  245 (256)
T ss_dssp             EEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTC
T ss_pred             ceEcccCCCCceEEEecccEEEEEEECCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999997754

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=1.9e-62  Score=478.57  Aligned_cols=224  Identities=29%  Similarity=0.529  Sum_probs=215.7

Q ss_pred             ccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccce
Q 036766          240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINA  319 (470)
Q Consensus       240 ~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~  319 (470)
                      .+++ |++++||+||++|.+|++++||||++.+||||+|+++|+++|+     .|.|+||+++++||+++||++||+||+
T Consensus        14 ~~~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na   87 (250)
T 3l60_A           14 PDVR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNS   87 (250)
T ss_dssp             CCCC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSE
T ss_pred             CCCC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhE
Confidence            3455 9999999999999999999999999999999999999998853     478999999999999999999999999


Q ss_pred             EEeC----CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCC
Q 036766          320 VIDG----DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYG  395 (470)
Q Consensus       320 ~i~~----~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G  395 (470)
                      +|++    ++|++++++|||+||++++||++|||+++++++|.||+++++++++++|+|+|+++|++||||||||+||+|
T Consensus        88 ~~~~~~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G  167 (250)
T 3l60_A           88 TWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALG  167 (250)
T ss_dssp             EEECTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGT
T ss_pred             EEeccCCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCC
Confidence            9975    489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhcc
Q 036766          396 SLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLD  469 (470)
Q Consensus       396 ~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~  469 (470)
                      +++|+|||||||++||++|++.++|++.+|++++|++|+|||+||||+|||+++|+||++|+++||+|+.|+.+
T Consensus       168 ~~~ftpIinppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~  241 (250)
T 3l60_A          168 VDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLD  241 (250)
T ss_dssp             CSSCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTT
T ss_pred             cceeEeeeCCCCceEEEecceEEEeEEECCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988765

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=5.6e-62  Score=474.48  Aligned_cols=228  Identities=36%  Similarity=0.540  Sum_probs=219.0

Q ss_pred             ccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccce
Q 036766          240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINA  319 (470)
Q Consensus       240 ~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~  319 (470)
                      ..+++|++++||.||++|.+|++++|||+++.++|+|+|+++|+++|+.+. +.|.++||+++++||+++||++||+||+
T Consensus        14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikA~~~Al~~~P~~Na   92 (243)
T 1dpb_A           14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPLLLKACAYLLKELPDFNS   92 (243)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHH-HTTCCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred             CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCCChHHHHHHHHHHHHHhChHhhE
Confidence            346789999999999999999999999999999999999999999886543 4688999999999999999999999999


Q ss_pred             EEeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766          320 VIDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL  397 (470)
Q Consensus       320 ~i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~  397 (470)
                      +|++  +++++++++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|++
T Consensus        93 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~  172 (243)
T 1dpb_A           93 SLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGT  172 (243)
T ss_dssp             EECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCS
T ss_pred             EEecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCcc
Confidence            9986  48999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      +|+|||||||+|||++|+++++|++.||+++++++|||||+||||+|||+++|+||++|+++||+|+.||+
T Consensus       173 ~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  243 (243)
T 1dpb_A          173 AFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             CCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             ceECccCCCCCeEEEccccEEEEEEECCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998875

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=2.3e-61  Score=474.38  Aligned_cols=230  Identities=34%  Similarity=0.556  Sum_probs=219.0

Q ss_pred             CccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccc
Q 036766          239 ERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIIN  318 (470)
Q Consensus       239 ~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN  318 (470)
                      ..++++||+++||+||++|.+|+ ++|||+++.++|||+|+++|+++|+. .++.|.++||+++++||+++||++||+||
T Consensus        29 ~~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~-~~~~g~kls~~~~~ikAva~Al~~~P~~N  106 (262)
T 2ii3_A           29 GKDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPI-AFARGIKLSFMPFFLKAASLGLLQFPILN  106 (262)
T ss_dssp             CCCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHH-HHHTTCCCCSHHHHHHHHHHHHHHCGGGS
T ss_pred             CCcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhh-hhhccCCccHHHHHHHHHHHHHHhChHhh
Confidence            34678999999999999999997 69999999999999999999999864 34568999999999999999999999999


Q ss_pred             eEEeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCC
Q 036766          319 AVIDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGS  396 (470)
Q Consensus       319 ~~i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~  396 (470)
                      ++|++  +++++++++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+
T Consensus       107 a~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~  186 (262)
T 2ii3_A          107 ASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGG  186 (262)
T ss_dssp             EEECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCC
T ss_pred             EEEeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCc
Confidence            99985  4899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCceeEEEEecceeEEEEe-CCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766          397 LLSTPIINPPQSAILGMHSIVQRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       397 ~~~tpii~~p~~aIl~vG~i~~~Pvv~-~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~  470 (470)
                      ++|+|||||||+|||++|++.++|++. ||++++|++|+|||+||||+|||+++|+||++|+++||+|+.||+++
T Consensus       187 ~~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~~~  261 (262)
T 2ii3_A          187 TYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL  261 (262)
T ss_dssp             SCEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHHHC
T ss_pred             cceECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHhhc
Confidence            999999999999999999999999997 78999999999999999999999999999999999999999988763

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=6.2e-61  Score=461.78  Aligned_cols=218  Identities=35%  Similarity=0.594  Sum_probs=208.6

Q ss_pred             ccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccce
Q 036766          240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINA  319 (470)
Q Consensus       240 ~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~  319 (470)
                      .++++|++++||+||++|.+|++++|||+++.++|+|+|+++|+++|+     .|.|+||+++++||+++||++||+||+
T Consensus         5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~-----~g~kls~~~~~ikA~~~Al~~~P~~N~   79 (224)
T 3rqc_A            5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA-----RNRKVTVTGFLARIVPSILKQYPYLNA   79 (224)
T ss_dssp             -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT-----TTCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred             CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence            457899999999999999999999999999999999999999999864     278999999999999999999999999


Q ss_pred             EEeCC--eEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766          320 VIDGD--DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL  397 (470)
Q Consensus       320 ~i~~~--~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~  397 (470)
                      +|+++  ++++++++|||+||++++||++|||+++++++|.||+++++++++++|+|+|.++|++||||||||+||+|++
T Consensus        80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~  159 (224)
T 3rqc_A           80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGI  159 (224)
T ss_dssp             BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCS
T ss_pred             EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCcc
Confidence            99877  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766          398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~  470 (470)
                      +|+|||||||++||++|++.++|+        |++|||||+||||+|||+++|+||++|+++||+|+.||+++
T Consensus       160 ~~tpiin~pq~aIl~vG~~~~~p~--------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~~  224 (224)
T 3rqc_A          160 MSTPIINYPEVAILGVHRILEREG--------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI  224 (224)
T ss_dssp             EEECCCCTTBSEEEEECCCEEETT--------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC--
T ss_pred             ceEeccCCCCceEEEecccEEECC--------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhcC
Confidence            999999999999999999999875        89999999999999999999999999999999999999874

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-61  Score=468.99  Aligned_cols=227  Identities=28%  Similarity=0.435  Sum_probs=217.2

Q ss_pred             ccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccce
Q 036766          240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINA  319 (470)
Q Consensus       240 ~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~  319 (470)
                      ..+++|++++||+||++|.+|++++|||+++.++|+|+|+++|+++|+.+.+  +.++||+++++||+++||++||+||+
T Consensus        11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~--~~kls~~~~~ikAv~~Al~~~P~~Na   88 (239)
T 3b8k_A           11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEANS   88 (239)
T ss_dssp             SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT--SSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred             CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc--cCCCCHHHHHHHHHHHHHHhChHhhE
Confidence            3567899999999999999999999999999999999999999998865322  35999999999999999999999999


Q ss_pred             EEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCc
Q 036766          320 VIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLS  399 (470)
Q Consensus       320 ~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~  399 (470)
                      +|+++++++++++|||+||++++||++|||+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+++|
T Consensus        89 ~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~f  168 (239)
T 3b8k_A           89 SWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF  168 (239)
T ss_dssp             TSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSC
T ss_pred             EEECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeEEEEecceeEEEE--eCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          400 TPIINPPQSAILGMHSIVQRPMV--VGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       400 tpii~~p~~aIl~vG~i~~~Pvv--~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      +||+||||++||++|+++++|++  .+|++++|++|||||+||||+|||+++|+||++|+++||+|+.||+
T Consensus       169 tpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  239 (239)
T 3b8k_A          169 SAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL  239 (239)
T ss_dssp             CCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred             ECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence            99999999999999999999999  4889999999999999999999999999999999999999998875

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.4e-47  Score=438.54  Aligned_cols=210  Identities=21%  Similarity=0.355  Sum_probs=178.4

Q ss_pred             HHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCC----eEEEeec
Q 036766          256 RLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGD----DIIYRDY  331 (470)
Q Consensus       256 ~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~----~i~~~~~  331 (470)
                      +|.+|+ ++||||++.+||||+|+++|+++|+.+.++.|.|+||++|++||+++||++||+||++|+++    +|+++++
T Consensus         1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~   79 (1113)
T 2xt6_A            1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH   79 (1113)
T ss_dssp             -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred             Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence            588895 79999999999999999999999987766778999999999999999999999999999853    7999999


Q ss_pred             ccEEEEEecC--CC---eEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCC
Q 036766          332 IDISIAVGTS--KG---LVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPP  406 (470)
Q Consensus       332 i~igiAV~~~--~G---L~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p  406 (470)
                      ||||+||+++  +|   |++|||+|+++++|.+|++++++++++||+|+|+++|++||||||||+||+|+.+|+||||||
T Consensus        80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp  159 (1113)
T 2xt6_A           80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG  159 (1113)
T ss_dssp             CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred             ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence            9999999997  67   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEecceeEEEEeC------CeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhh
Q 036766          407 QSAILGMHSIVQRPMVVG------GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRL  466 (470)
Q Consensus       407 ~~aIl~vG~i~~~Pvv~~------G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~l  466 (470)
                      |+|||++|++.++|++.+      |+++++++|+|||+||||||||+++|+||++|+++||+|+.|
T Consensus       160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w  225 (1113)
T 2xt6_A          160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF  225 (1113)
T ss_dssp             CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence            999999999999998866      689999999999999999999999999999999999999865

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=100.00  E-value=2.5e-44  Score=345.00  Aligned_cols=192  Identities=11%  Similarity=0.125  Sum_probs=169.5

Q ss_pred             HHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEe
Q 036766          250 RKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYR  329 (470)
Q Consensus       250 Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~  329 (470)
                      ||.--+..  ...++|||+++.++|||+|+++|++.          ++||+++++||+++||++||+||++|++++++++
T Consensus        18 R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~   85 (219)
T 1q23_A           18 RKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIW   85 (219)
T ss_dssp             THHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEE
T ss_pred             CHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEe
Confidence            44444443  33679999999999999999998652          7899999999999999999999999999999999


Q ss_pred             ecccEEEEE-ecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC-CCCC-CcCCCCeEEEEeCCCCCCCCcccccCCC
Q 036766          330 DYIDISIAV-GTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDG-SISI-DEMAGGSFTISNGGVYGSLLSTPIINPP  406 (470)
Q Consensus       330 ~~i~igiAV-~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g-~l~~-~d~~ggtftISnlG~~G~~~~tpii~~p  406 (470)
                      +++|||+|| ++++||++||+.. +.+++.+|++++++++++||+| +|++ +|+ ||||||||+||+|.+.+.+.+++|
T Consensus        86 ~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~  163 (219)
T 1q23_A           86 DSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANM  163 (219)
T ss_dssp             SCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCC
T ss_pred             cccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCC
Confidence            999999999 9999999999986 5689999999999999999998 6976 889 999999999998766555554433


Q ss_pred             -c--eeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 036766          407 -Q--SAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEP  463 (470)
Q Consensus       407 -~--~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P  463 (470)
                       +  ++||++|++.++    +|    +++|||||+||||+|||+++|+||++|+++||+|
T Consensus       164 ~~~~~pIi~~G~~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~  215 (219)
T 1q23_A          164 DNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW  215 (219)
T ss_dssp             TTCCSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ccceeEEEecccEEEE----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCc
Confidence             2  699999999876    44    7899999999999999999999999999999985

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=100.00  E-value=9e-44  Score=339.86  Aligned_cols=182  Identities=12%  Similarity=0.128  Sum_probs=166.2

Q ss_pred             cCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEE-ec
Q 036766          262 NTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAV-GT  340 (470)
Q Consensus       262 ~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV-~~  340 (470)
                      .++|||+++.++|||+|+++|++.          ++||+++++||+++||++||+||++|+++++++++++|||+|| ++
T Consensus        23 ~~~P~~~~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t   92 (213)
T 3cla_A           23 RLPCGFSLTSKIDITTLKKSLDDS----------AYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ   92 (213)
T ss_dssp             TSCCEEEEEEEEECHHHHHHHHTS----------SCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred             CCCceEEEEEEEEHHHHHHHHHHh----------CCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence            568999999999999999998642          8999999999999999999999999999999999999999999 99


Q ss_pred             CCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC-CCCC-CcCCCCeEEEEeCCCCCCCCcccccCCC---ceeEEEEec
Q 036766          341 SKGLVVPVIRNADKMNFADIEKEINTLAKKANDG-SISI-DEMAGGSFTISNGGVYGSLLSTPIINPP---QSAILGMHS  415 (470)
Q Consensus       341 ~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g-~l~~-~d~~ggtftISnlG~~G~~~~tpii~~p---~~aIl~vG~  415 (470)
                      ++||++||+.+ +.+++.+|++++.+++++||+| +|++ +|++||||||||+||++.+.++...+++   ..+|+++|+
T Consensus        93 ~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~G~  171 (213)
T 3cla_A           93 ETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAK  171 (213)
T ss_dssp             TTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEEEEC
T ss_pred             CCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEEeeE
Confidence            99999999987 5689999999999999999996 9988 7899999999999998877764444433   358999999


Q ss_pred             ceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766          416 IVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEE  462 (470)
Q Consensus       416 i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~  462 (470)
                      +.++    +|    +++|||||+||||+|||+++|+||++|+++||+
T Consensus       172 ~~~~----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~  210 (213)
T 3cla_A          172 YQQE----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS  210 (213)
T ss_dssp             CEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred             EEEE----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence            9875    44    789999999999999999999999999999998

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6e-42  Score=327.82  Aligned_cols=180  Identities=17%  Similarity=0.190  Sum_probs=164.1

Q ss_pred             cCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEe-CCeEEEeecccEEEEE-e
Q 036766          262 NTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID-GDDIIYRDYIDISIAV-G  339 (470)
Q Consensus       262 ~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~-~~~i~~~~~i~igiAV-~  339 (470)
                      .++|||+++.++|||+|+++||+.          ++||+++++||+++||++||+||++|+ ++++++++++|||+|| +
T Consensus        25 ~~~P~~~~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~   94 (217)
T 2i9d_A           25 FQNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI   94 (217)
T ss_dssp             CSBCEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred             CCCceEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence            578999999999999999998753          899999999999999999999999999 8999999999999999 9


Q ss_pred             cCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCCCC------cCCCCeEEEEeCCCCCCCCcccccCCC---cee
Q 036766          340 TSKGLVVPVIRNADKMNFADIEKEINTLAKKAND-GSISID------EMAGGSFTISNGGVYGSLLSTPIINPP---QSA  409 (470)
Q Consensus       340 ~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~-g~l~~~------d~~ggtftISnlG~~G~~~~tpii~~p---~~a  409 (470)
                      +++||++|++. ++.+++.+|++++++++++||+ |+|+++      |++||||||||+||++.+.++...+++   ..+
T Consensus        95 t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~P  173 (217)
T 2i9d_A           95 KENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYP  173 (217)
T ss_dssp             STTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSSC
T ss_pred             cCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceEE
Confidence            99999999986 5678999999999999999999 599995      999999999999999877775555444   358


Q ss_pred             EEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHh
Q 036766          410 ILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVV  460 (470)
Q Consensus       410 Il~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~L  460 (470)
                      |+++|++.++    +|    |++|||||+||||+|||+++|+||++|+++|
T Consensus       174 Ii~~Gk~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l  216 (217)
T 2i9d_A          174 LLNAGKAIIR----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL  216 (217)
T ss_dssp             EEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             EEecceEEEE----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence            9999999875    44    7899999999999999999999999999987

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=9.9e-19  Score=146.69  Aligned_cols=85  Identities=26%  Similarity=0.573  Sum_probs=79.7

Q ss_pred             CCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCcc-CCCCeEEEE
Q 036766           94 EGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETV-EPGTKIAVI  172 (470)
Q Consensus        94 ~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v-~~G~~l~~i  172 (470)
                      ...+.++++||++|++|.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.| .+|++|+.|
T Consensus         3 ~~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i   82 (98)
T 2dnc_A            3 SGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLI   82 (98)
T ss_dssp             CCCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEE
T ss_pred             CCcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEE
Confidence            3456789999999999999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             eeCCCC
Q 036766          173 SKSGEG  178 (470)
Q Consensus       173 ~~~~~~  178 (470)
                      ...+++
T Consensus        83 ~~~~~~   88 (98)
T 2dnc_A           83 VEEGED   88 (98)
T ss_dssp             ECTTSC
T ss_pred             ecCCCc
Confidence            876543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.78  E-value=1.4e-18  Score=142.43  Aligned_cols=82  Identities=26%  Similarity=0.457  Sum_probs=77.8

Q ss_pred             CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC-ccCCCCeEEEEee
Q 036766           96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE-TVEPGTKIAVISK  174 (470)
Q Consensus        96 ~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~-~v~~G~~l~~i~~  174 (470)
                      ++.++++||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|..
T Consensus         3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~   82 (87)
T 3crk_C            3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (87)
T ss_dssp             CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred             CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence            456889999999999999999999999999999999999999999999999999999999999999 8999999999986


Q ss_pred             CCC
Q 036766          175 SGE  177 (470)
Q Consensus       175 ~~~  177 (470)
                      .++
T Consensus        83 ~~~   85 (87)
T 3crk_C           83 KEA   85 (87)
T ss_dssp             SST
T ss_pred             ccC
Confidence            543

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.78  E-value=2.7e-19  Score=152.78  Aligned_cols=84  Identities=27%  Similarity=0.439  Sum_probs=79.7

Q ss_pred             CCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC-ccCCCCeEEEE
Q 036766           94 EGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE-TVEPGTKIAVI  172 (470)
Q Consensus        94 ~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~-~v~~G~~l~~i  172 (470)
                      +.++.++|+||++|++|.+|+|++|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++|
T Consensus         3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i   82 (108)
T 2dne_A            3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICIT   82 (108)
T ss_dssp             CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEE
T ss_pred             CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999 89999999999


Q ss_pred             eeCCC
Q 036766          173 SKSGE  177 (470)
Q Consensus       173 ~~~~~  177 (470)
                      ...++
T Consensus        83 ~~~~~   87 (108)
T 2dne_A           83 VGKPE   87 (108)
T ss_dssp             ESCHH
T ss_pred             ecCcc
Confidence            87544

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.77  E-value=1.3e-18  Score=152.57  Aligned_cols=86  Identities=27%  Similarity=0.445  Sum_probs=80.3

Q ss_pred             CCCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC-ccCCCCeEEE
Q 036766           93 SEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE-TVEPGTKIAV  171 (470)
Q Consensus        93 ~~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~-~v~~G~~l~~  171 (470)
                      ++.++.++|+||++|++|++|+|++|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++
T Consensus        22 ~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~  101 (128)
T 1y8o_B           22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI  101 (128)
T ss_dssp             -CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred             ccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEE
Confidence            456678999999999999999999999999999999999999999999999999999999999999998 8999999999


Q ss_pred             EeeCCCC
Q 036766          172 ISKSGEG  178 (470)
Q Consensus       172 i~~~~~~  178 (470)
                      |+..+++
T Consensus       102 i~~~~~~  108 (128)
T 1y8o_B          102 IVEKEAD  108 (128)
T ss_dssp             EESSGGG
T ss_pred             EecCccc
Confidence            9876543

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.75  E-value=4e-18  Score=141.61  Aligned_cols=81  Identities=23%  Similarity=0.349  Sum_probs=77.1

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +.++|.||++|+++.+|+|.+|+|++||.|++||+|++||+||+..+|+||++|+|.++++++|+.|.+|++|+.|+..+
T Consensus         3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~   82 (93)
T 1k8m_A            3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (93)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999998654


Q ss_pred             C
Q 036766          177 E  177 (470)
Q Consensus       177 ~  177 (470)
                      .
T Consensus        83 ~   83 (93)
T 1k8m_A           83 L   83 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.71  E-value=2.5e-17  Score=132.25  Aligned_cols=76  Identities=43%  Similarity=0.674  Sum_probs=73.8

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      ++++||++|+++.+|+|.+|++++||.|++||+|+++|+||+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999864

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.66  E-value=1.5e-16  Score=127.04  Aligned_cols=75  Identities=32%  Similarity=0.570  Sum_probs=73.2

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999986

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.66  E-value=1.9e-16  Score=127.20  Aligned_cols=78  Identities=28%  Similarity=0.524  Sum_probs=74.0

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      |.++++||++|++  +|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+.|..|++|+.|...+
T Consensus         1 m~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   78 (80)
T 1qjo_A            1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CCeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence            3468999999998  99999999999999999999999999999999999999999999999999999999999998654

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.66  E-value=4.1e-18  Score=137.32  Aligned_cols=76  Identities=37%  Similarity=0.606  Sum_probs=73.4

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~  174 (470)
                      .+++||++|+++.+|+|.+|++++||.|++||+|++||+||+..+|+||++|+|.++++++|+.|.+|++|+.|..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999998864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.61  E-value=1.9e-15  Score=121.21  Aligned_cols=75  Identities=27%  Similarity=0.490  Sum_probs=71.3

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ++++||++|++  + +|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+.|..|++|+.|...+
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~   76 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence            47899999996  7 999999999999999999999999999999999999999999999999999999999998654

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.58  E-value=7.8e-16  Score=124.02  Aligned_cols=76  Identities=32%  Similarity=0.510  Sum_probs=72.7

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ++++||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|.++++++|+.|..|++|+.|...
T Consensus         3 ~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (81)
T 1gjx_A            3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             EEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence            578999999 6899999999999999999999999999999999999999999999999999999999999999754

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.48  E-value=4.1e-15  Score=121.10  Aligned_cols=72  Identities=29%  Similarity=0.531  Sum_probs=68.3

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ++|++|.+      |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus         3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   74 (85)
T ss_dssp             SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred             cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            46788988      8999999999999999999999999999999999999999999999999999999999998754

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.37  E-value=1.5e-12  Score=101.99  Aligned_cols=65  Identities=31%  Similarity=0.490  Sum_probs=62.1

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ..|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+.|..|++|+.|...
T Consensus         6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   70 (72)
T 1z6h_A            6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS   70 (72)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred             ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence            46999999999999999999999999999999999999999999999999999999999998653

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.36  E-value=7e-13  Score=107.71  Aligned_cols=66  Identities=23%  Similarity=0.382  Sum_probs=62.6

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|+|.+|++++||.|++||+|++||+||+..+|.||.+|+|.++. ++|+.|.+|++|+.|...+.
T Consensus        12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~~   77 (84)
T 2kcc_A           12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDDL   77 (84)
T ss_dssp             SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSCS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCCh
Confidence            5699999999999999999999999999999999999999999999 99999999999999986554

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.31  E-value=5.3e-13  Score=110.75  Aligned_cols=77  Identities=22%  Similarity=0.332  Sum_probs=29.2

Q ss_pred             ceEEEEccCCCCCC----ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766           97 DLVDAVVPFMGESI----TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus        97 ~~~~v~~P~lg~~~----~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      ...+|.+|..++..    ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++.+++|+.|..|++|+.|
T Consensus        14 ~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i   93 (94)
T 2jku_A           14 GTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL   93 (94)
T ss_dssp             ----------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-----------------------------------
T ss_pred             cCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEE
Confidence            44678999998864    59999999999999999999999999999999999999999999999999999999999987


Q ss_pred             e
Q 036766          173 S  173 (470)
Q Consensus       173 ~  173 (470)
                      +
T Consensus        94 e   94 (94)
T 2jku_A           94 E   94 (94)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=4.6e-12  Score=106.20  Aligned_cols=66  Identities=23%  Similarity=0.415  Sum_probs=62.3

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|+|.+|++++||.|++||+|+++|+||+..+|+||.+|+|. +++++|+.|..|++|+.|...+.
T Consensus        24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~~~   89 (100)
T 2dn8_A           24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELDDP   89 (100)
T ss_dssp             SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCSCS
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcCCc
Confidence            5699999999999999999999999999999999999999999 99999999999999999976543

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.26  E-value=1.6e-11  Score=96.33  Aligned_cols=63  Identities=30%  Similarity=0.565  Sum_probs=60.5

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|.+|++++||.|++||+|+++|++|+..++.||.+|+|.++.+++|+.|..|++|+.|+
T Consensus        12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            469999999999999999999999999999999999999999999999999999999999874

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.24  E-value=1.9e-11  Score=102.32  Aligned_cols=67  Identities=21%  Similarity=0.394  Sum_probs=63.7

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus        21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~   87 (99)
T 2ejm_A           21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES   87 (99)
T ss_dssp             SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence            4699999999999999999999999999999999999999999999999999999999999986554

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.24  E-value=1.9e-11  Score=96.94  Aligned_cols=63  Identities=25%  Similarity=0.482  Sum_probs=60.5

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|.+|++++||.|++||+|++++++|+..+|.||.+|+|.++.+++|+.|..|++|+.|+
T Consensus        15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            468999999999999999999999999999999999999999999999999999999999874

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.22  E-value=1.6e-11  Score=98.38  Aligned_cols=62  Identities=21%  Similarity=0.416  Sum_probs=57.8

Q ss_pred             eEEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          112 DGTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       112 eg~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      .|+|.+       |++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus        12 ~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           12 VGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            366665       69999999999999999999999999999999999999999999999999999874

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.13  E-value=6.6e-11  Score=130.43  Aligned_cols=63  Identities=19%  Similarity=0.268  Sum_probs=60.9

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|++|+|++||+|++||+|++||+|||+++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus       619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            459999999999999999999999999999999999999999999999999999999999984

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.06  E-value=1.7e-10  Score=134.01  Aligned_cols=61  Identities=31%  Similarity=0.478  Sum_probs=59.9

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      .|+|.+|+|++||+|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|
T Consensus      1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            4999999999999999999999999999999999999999999999999999999999987

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.03  E-value=2.4e-10  Score=132.26  Aligned_cols=65  Identities=25%  Similarity=0.471  Sum_probs=61.4

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+.+
T Consensus      1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred             ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            35999999999999999999999999999999999999999999999999999999999999754

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.79  E-value=5.3e-09  Score=89.40  Aligned_cols=67  Identities=21%  Similarity=0.390  Sum_probs=61.4

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeee-----------------------------eEecCCCeEEEEEeecCCC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTI-----------------------------DVASPEAGVIKELVAKEGE  161 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~-----------------------------~i~ap~~G~l~~i~v~eG~  161 (470)
                      ..|+|.+|+|++||.|++||+|+++++.++..                             .|.||.+|+|.++.+++|+
T Consensus         8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~   87 (116)
T 2k32_A            8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD   87 (116)
T ss_dssp             SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred             CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence            46999999999999999999999999986654                             8999999999999999999


Q ss_pred             ccCCC-CeEEEEeeCCC
Q 036766          162 TVEPG-TKIAVISKSGE  177 (470)
Q Consensus       162 ~v~~G-~~l~~i~~~~~  177 (470)
                      .|..| ++|+.|.+.+.
T Consensus        88 ~v~~g~~~l~~i~~~~~  104 (116)
T 2k32_A           88 YVSASTTELVRVTNLNP  104 (116)
T ss_dssp             EECTTTSCCEEEECSCT
T ss_pred             EEcCCCcEEEEEECCCe
Confidence            99999 99999987654

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.77  E-value=1.6e-09  Score=119.26  Aligned_cols=62  Identities=21%  Similarity=0.315  Sum_probs=60.0

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      ..|+|++|+|++||.|++||+|++||+||+..+|.||.+|+|.++.+++|+.|..|++|+.|
T Consensus       656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i  717 (718)
T 3bg3_A          656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI  717 (718)
T ss_dssp             SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred             CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence            36999999999999999999999999999999999999999999999999999999999876

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.76  E-value=1.1e-08  Score=90.36  Aligned_cols=71  Identities=27%  Similarity=0.318  Sum_probs=60.3

Q ss_pred             EEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEE---eecCCCccC---CCC-eEEEE
Q 036766          101 AVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKEL---VAKEGETVE---PGT-KIAVI  172 (470)
Q Consensus       101 v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i---~v~eG~~v~---~G~-~l~~i  172 (470)
                      +..|.+|+      |+.+.+ ++||.|++||+||+||+||+..+|.||.+|+|.++   ++++|+.|.   .|+ .|+.|
T Consensus        39 ~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i  112 (136)
T 1zko_A           39 HAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKM  112 (136)
T ss_dssp             HHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred             hhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEE
Confidence            34566654      444444 99999999999999999999999999999999999   888999998   898 99999


Q ss_pred             eeCCC
Q 036766          173 SKSGE  177 (470)
Q Consensus       173 ~~~~~  177 (470)
                      ...+.
T Consensus       113 ~~~~~  117 (136)
T 1zko_A          113 EISDE  117 (136)
T ss_dssp             EESCG
T ss_pred             EECCH
Confidence            86653

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.71  E-value=5.8e-09  Score=121.04  Aligned_cols=63  Identities=21%  Similarity=0.431  Sum_probs=54.3

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      ..|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++.+++|+.|..|++|+.|+
T Consensus      1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            359999999999999999999999999999999999999999999999999999999999875

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.30  E-value=9.4e-07  Score=77.12  Aligned_cols=70  Identities=26%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             EccCCCCCCceEEEEEEE-eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeec---CCCcc---CCCC-eEEEEe
Q 036766          102 VVPFMGESITDGTLAKFL-KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK---EGETV---EPGT-KIAVIS  173 (470)
Q Consensus       102 ~~P~lg~~~~eg~I~~w~-v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~---eG~~v---~~G~-~l~~i~  173 (470)
                      ..|.+|+      |+.+. .++||+|++||++|+||++|+..+|.||.+|+|.+++.+   ..+.|   +-|+ -|+.|.
T Consensus        31 a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~  104 (128)
T 1onl_A           31 AQDALGD------VVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLK  104 (128)
T ss_dssp             HHHHHCS------EEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEE
T ss_pred             HhhcCCC------ceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEE
Confidence            4455554      44444 499999999999999999999999999999999999744   55566   6777 888888


Q ss_pred             eCCC
Q 036766          174 KSGE  177 (470)
Q Consensus       174 ~~~~  177 (470)
                      ..+.
T Consensus       105 ~~~~  108 (128)
T 1onl_A          105 PRDM  108 (128)
T ss_dssp             ESCG
T ss_pred             ECCH
Confidence            6553

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.23  E-value=5.9e-07  Score=78.72  Aligned_cols=63  Identities=21%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             EEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC---Ccc---CCCC-eEEEEeeCC
Q 036766          114 TLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG---ETV---EPGT-KIAVISKSG  176 (470)
Q Consensus       114 ~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG---~~v---~~G~-~l~~i~~~~  176 (470)
                      .|+.+.+ ++||+|++||++++||+||+..+|.||.+|+|.+++.+.+   +.|   +-|+ -|+.|...+
T Consensus        37 ~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~  107 (131)
T 1hpc_A           37 EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS  107 (131)
T ss_dssp             SEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESS
T ss_pred             CceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECC
Confidence            3555555 9999999999999999999999999999999999975544   455   3566 888888655

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.19  E-value=1.6e-06  Score=75.70  Aligned_cols=70  Identities=21%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             EEccCCCCCCceEEEEEEE-eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecC---CCccC---CCC-eEEEE
Q 036766          101 AVVPFMGESITDGTLAKFL-KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKE---GETVE---PGT-KIAVI  172 (470)
Q Consensus       101 v~~P~lg~~~~eg~I~~w~-v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~e---G~~v~---~G~-~l~~i  172 (470)
                      +.+|.+|+      |+.+. +++||+|++||++|+||++|+..+|.||.+|+|.+++.+.   .+.|.   -|+ -|+.|
T Consensus        31 ~a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i  104 (128)
T 3a7l_A           31 HAQELLGD------MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKI  104 (128)
T ss_dssp             HHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEE
T ss_pred             HHhccCCc------eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEE
Confidence            34565654      44444 4999999999999999999999999999999999997544   44454   666 88888


Q ss_pred             eeCC
Q 036766          173 SKSG  176 (470)
Q Consensus       173 ~~~~  176 (470)
                      ...+
T Consensus       105 ~~~~  108 (128)
T 3a7l_A          105 KASD  108 (128)
T ss_dssp             EESC
T ss_pred             EECC
Confidence            7655

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.84  E-value=2.2e-05  Score=81.30  Aligned_cols=66  Identities=20%  Similarity=0.363  Sum_probs=58.8

Q ss_pred             ceEEEEEEEe-CCCCeeeCCCcEEEEEcC------------------------------------------------Cee
Q 036766          111 TDGTLAKFLK-GPGDRVELDEPIAQIETD------------------------------------------------KVT  141 (470)
Q Consensus       111 ~eg~I~~w~v-~~Gd~V~~gd~l~evetd------------------------------------------------K~~  141 (470)
                      ..|.|.+++| ++||.|++||+|+++++.                                                ...
T Consensus       128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  207 (413)
T 3ne5_B          128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR  207 (413)
T ss_dssp             SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred             cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence            4699999998 999999999999999952                                                234


Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|.||++|+|.++.+++|+.|..|++|+.|...+
T Consensus       208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~~  242 (413)
T 3ne5_B          208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD  242 (413)
T ss_dssp             EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCCC
Confidence            67999999999999999999999999999997544

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.82  E-value=6.6e-06  Score=80.10  Aligned_cols=67  Identities=25%  Similarity=0.326  Sum_probs=58.4

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|+|.+++|++||.|++||+|+++++..                                                   
T Consensus        29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~  108 (277)
T 2f1m_A           29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  108 (277)
T ss_dssp             SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence            45999999999999999999999998741                                                   


Q ss_pred             --------------------eeeeEecCCCeEEEEEeecCCCccCCC--CeEEEEeeCCC
Q 036766          140 --------------------VTIDVASPEAGVIKELVAKEGETVEPG--TKIAVISKSGE  177 (470)
Q Consensus       140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G--~~l~~i~~~~~  177 (470)
                                          ....|.||++|+|..+.+++|+.|..|  ++|+.|...+.
T Consensus       109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~~  168 (277)
T 2f1m_A          109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP  168 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCCc
Confidence                                124799999999999999999999999  58999976543

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.80  E-value=2.3e-05  Score=79.10  Aligned_cols=67  Identities=19%  Similarity=0.324  Sum_probs=59.4

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe--------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV--------------------------------------------------  140 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~--------------------------------------------------  140 (470)
                      ..|+|.+++|++||.|++||+|+++++...                                                  
T Consensus        64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a  143 (359)
T 3lnn_A           64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS  143 (359)
T ss_dssp             SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999997532                                                  


Q ss_pred             --------------------------eeeEecCCCeEEEEEeecCCCccCC-CCeEEEEeeCCC
Q 036766          141 --------------------------TIDVASPEAGVIKELVAKEGETVEP-GTKIAVISKSGE  177 (470)
Q Consensus       141 --------------------------~~~i~ap~~G~l~~i~v~eG~~v~~-G~~l~~i~~~~~  177 (470)
                                                ...|.||++|+|.++.+++|+.|.. |++|+.|...+.
T Consensus       144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~~  207 (359)
T 3lnn_A          144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLSH  207 (359)
T ss_dssp             HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCSE
T ss_pred             HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCCe
Confidence                                      2579999999999999999999999 999999986543

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.75  E-value=2.5e-05  Score=78.24  Aligned_cols=66  Identities=21%  Similarity=0.403  Sum_probs=57.3

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|+|.+++|++||.|++||+|+++++..                                                   
T Consensus        38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  117 (341)
T 3fpp_A           38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD  117 (341)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence            45999999999999999999999998741                                                   


Q ss_pred             ----------------------------------eeeeEecCCCeEEEEEeecCCCccCCCCe---EEEEeeCC
Q 036766          140 ----------------------------------VTIDVASPEAGVIKELVAKEGETVEPGTK---IAVISKSG  176 (470)
Q Consensus       140 ----------------------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~~---l~~i~~~~  176 (470)
                                                        ....|.||++|+|.++.+.+|+.|..|++   |+.|.+.+
T Consensus       118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~~  191 (341)
T 3fpp_A          118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMS  191 (341)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecCC
Confidence                                              11459999999999999999999999987   88887544

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.55  E-value=0.0001  Score=63.85  Aligned_cols=78  Identities=15%  Similarity=0.155  Sum_probs=55.8

Q ss_pred             eEEEEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC---cc---CCCC-eE
Q 036766           98 LVDAVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE---TV---EPGT-KI  169 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~---~v---~~G~-~l  169 (470)
                      ...|-+-+.+.. .-|.|+.+.. ++|++|++||+++.||++|+..+|.||.+|+|.++...-.+   .+   +-|+ =|
T Consensus        18 ~~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl   96 (125)
T 3klr_A           18 VGTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWL   96 (125)
T ss_dssp             EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCC
T ss_pred             EEEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceE
Confidence            445555554432 2366776665 78999999999999999999999999999999998644333   22   3454 36


Q ss_pred             EEEeeCC
Q 036766          170 AVISKSG  176 (470)
Q Consensus       170 ~~i~~~~  176 (470)
                      +.|...+
T Consensus        97 ~ki~~~~  103 (125)
T 3klr_A           97 IKMTFSN  103 (125)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            6666543

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.47  E-value=3.7e-05  Score=78.26  Aligned_cols=66  Identities=26%  Similarity=0.349  Sum_probs=57.6

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|+|.+++|++||.|++||+|++|++..                                                   
T Consensus        50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~  129 (369)
T 1vf7_A           50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  129 (369)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            45999999999999999999999998642                                                   


Q ss_pred             ------eeeeEecCCCeEEEEEeecCCCccCCC--CeEEEEeeCC
Q 036766          140 ------VTIDVASPEAGVIKELVAKEGETVEPG--TKIAVISKSG  176 (470)
Q Consensus       140 ------~~~~i~ap~~G~l~~i~v~eG~~v~~G--~~l~~i~~~~  176 (470)
                            ....|.||++|+|.++.+++|+.|..|  ++|+.|...+
T Consensus       130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~  174 (369)
T 1vf7_A          130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD  174 (369)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCS
T ss_pred             HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCC
Confidence                  124799999999999999999999995  8999987544

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.42  E-value=0.00018  Score=63.55  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=46.6

Q ss_pred             eEEEEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKE  159 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~e  159 (470)
                      ...|-+-+.+.. .-|.|+-+.. ++|++|++||+++.||++|+..+|.||.+|+|.++.-.-
T Consensus        40 ~~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L  101 (143)
T 3mxu_A           40 VVTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAAL  101 (143)
T ss_dssp             EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred             EEEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhh
Confidence            444555444332 2355665544 789999999999999999999999999999999986443

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.35  E-value=0.00018  Score=63.15  Aligned_cols=59  Identities=22%  Similarity=0.277  Sum_probs=46.1

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      ....|-+-+.... .-|.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.
T Consensus        34 ~~~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN   93 (137)
T 3tzu_A           34 GPVRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN   93 (137)
T ss_dssp             SCEEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred             CEEEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence            3455555554432 2355665544 789999999999999999999999999999999985

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.04  E-value=3.8e-05  Score=77.70  Aligned_cols=65  Identities=22%  Similarity=0.369  Sum_probs=55.2

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|+|.+++|++||.|++||+|+++++..                                                   
T Consensus        39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  118 (369)
T 4dk0_A           39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN  118 (369)
T ss_dssp             SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred             CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            45899999999999999999999998642                                                   


Q ss_pred             ----------------------------------eeeeEecCCCeEEEEEeecCCCccCCCCe---EEEEeeC
Q 036766          140 ----------------------------------VTIDVASPEAGVIKELVAKEGETVEPGTK---IAVISKS  175 (470)
Q Consensus       140 ----------------------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~~---l~~i~~~  175 (470)
                                                        ....|.||++|+|.++.+++|+.|..|++   |+.|...
T Consensus       119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~  191 (369)
T 4dk0_A          119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADL  191 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEcCC
Confidence                                              11359999999999999999999999998   6655443

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.04  E-value=0.00077  Score=60.19  Aligned_cols=58  Identities=21%  Similarity=0.233  Sum_probs=44.1

Q ss_pred             eEEEEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766           98 LVDAVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      ...|-+-+.... .-|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus        45 ~~~VGITd~Aq~-~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN  103 (155)
T 3hgb_A           45 TVRVGITDYAQS-ALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN  103 (155)
T ss_dssp             EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             EEEEeeCHHHHH-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence            344444444332 2355555544 789999999999999999999999999999998875

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.57  E-value=0.0011  Score=54.83  Aligned_cols=48  Identities=21%  Similarity=0.320  Sum_probs=43.1

Q ss_pred             CCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          129 DEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       129 gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      |..+|.+|.++....|.||.+|+|.++++++||.|+.||+|+.++...
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k   52 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK   52 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETT
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecc
Confidence            455688888888889999999999999999999999999999998643

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=96.44  E-value=0.0063  Score=61.08  Aligned_cols=62  Identities=16%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +=+++..++.||.|++||+|++|..    .....+|.||.+|+|...  ...-.|..|+.|+.|...+
T Consensus       265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~~  330 (331)
T 3na6_A          265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVVE  330 (331)
T ss_dssp             CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECBC
T ss_pred             CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEeccC
Confidence            3377788999999999999999997    356789999999999664  4457889999999997654

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=96.36  E-value=0.0087  Score=60.54  Aligned_cols=61  Identities=18%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             EEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          115 LAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       115 I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      +++..++.||.|++||+|+.|+.    .+...+|.||.+|+|...  ..+..|..|+.|+.|.....
T Consensus       277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~~  341 (354)
T 3cdx_A          277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDYN  341 (354)
T ss_dssp             EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEECC
T ss_pred             EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeecC
Confidence            78888999999999999999997    478899999999999755  57789999999999986543

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=96.12  E-value=0.012  Score=60.03  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=51.7

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEc------CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIET------DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evet------dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      +=|....++.||.|++||+|++|..      .....+|.||.+|+|.-  ....-.|..|+.|+.|...
T Consensus       298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~--~~~~p~V~~G~~l~~i~~~  364 (368)
T 3fmc_A          298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPIL--HFASASVHQGTELYKVMTK  364 (368)
T ss_dssp             CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEE--ECSSSEECTTCEEEEEEES
T ss_pred             CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEE--EeCCCccCCCCEEEEEeee
Confidence            4566789999999999999999998      55778999999999965  4455789999999998753

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.06  E-value=0.0071  Score=46.16  Aligned_cols=34  Identities=24%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .|.||.+|+|.++++++|+.|..|++|+.++...
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   34 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMK   34 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECCc
Confidence            3789999999999999999999999999998754

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=95.93  E-value=0.0097  Score=45.53  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=32.2

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|.||.+|+|.++++++|+.|+.||+|+.++...
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   40 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK   40 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence            46889999999999999999999999999998654

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=95.90  E-value=0.0086  Score=46.39  Aligned_cols=36  Identities=28%  Similarity=0.566  Sum_probs=32.8

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|.||.+|+|.++++++|+.|+.|++|+.++...
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~   43 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK   43 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred             CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccc
Confidence            456899999999999999999999999999998754

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=95.50  E-value=0.013  Score=49.19  Aligned_cols=34  Identities=24%  Similarity=0.443  Sum_probs=32.1

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      +.|.|+.+|+|.++.+++|+.|+.|++|+.|+..
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            5789999999999999999999999999999875

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=95.10  E-value=0.013  Score=46.61  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|.||.+|+|.++++++|+.|..|++|+.++...
T Consensus         6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k   40 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK   40 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred             ceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence            46899999999999999999999999999998544

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=95.06  E-value=0.018  Score=51.81  Aligned_cols=60  Identities=23%  Similarity=0.324  Sum_probs=52.1

Q ss_pred             ceEEEEEEEeCCCCeeeC----CCcEEEEEcCCeeeeEecCCCeEEEEE-------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVEL----DEPIAQIETDKVTIDVASPEAGVIKEL-------------------------------  155 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~----gd~l~evetdK~~~~i~ap~~G~l~~i-------------------------------  155 (470)
                      -.|+|+.+. +..|.+-.    |+-++...++   ..+.||.+|+|..+                               
T Consensus        19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~   94 (161)
T 1f3z_A           19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE   94 (161)
T ss_dssp             SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred             CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence            569999976 78888766    8999988876   47899999999988                               


Q ss_pred             ----eecCCCccCCCCeEEEEee
Q 036766          156 ----VAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       156 ----~v~eG~~v~~G~~l~~i~~  174 (470)
                          ++++||.|+.||+|+.++.
T Consensus        95 gF~~~V~~Gd~V~~G~~L~~~d~  117 (161)
T 1f3z_A           95 GFKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             TEEECSCTTCEECTTCEEEEECH
T ss_pred             ccEEEEeCcCEECCCCEEEEECH
Confidence                8999999999999999963

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=94.64  E-value=0.023  Score=50.78  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=51.5

Q ss_pred             ceEEEEEEEeCCCCeeeC----CCcEEEEEcCCeeeeEecCCCeEEEE--------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVEL----DEPIAQIETDKVTIDVASPEAGVIKE--------------------------------  154 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~----gd~l~evetdK~~~~i~ap~~G~l~~--------------------------------  154 (470)
                      -.|+|+.+. ++.|.+-.    |+.++...++   ..+.||.+|+|..                                
T Consensus        14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~   89 (154)
T 2gpr_A           14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN   89 (154)
T ss_dssp             SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred             CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence            468998874 78888766    8999988876   4899999999987                                


Q ss_pred             ---EeecCCCccCCCCeEEEEee
Q 036766          155 ---LVAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       155 ---i~v~eG~~v~~G~~l~~i~~  174 (470)
                         +++++||.|+.||+|+.++.
T Consensus        90 gF~~~V~~Gd~V~~G~~L~~~d~  112 (154)
T 2gpr_A           90 GFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             SEEECCCTTCEECTTCEEEEECH
T ss_pred             ceEEEEcCCCEEcCCCEEEEECH
Confidence               48999999999999999963

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=94.58  E-value=0.072  Score=53.17  Aligned_cols=61  Identities=11%  Similarity=0.214  Sum_probs=49.8

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      +-+....++.|+.|++||+|+++..    .+...+|.||.+|+|.-.  ...-.|..|+.|+.|...
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~~  329 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILARP  329 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEeeE
Confidence            4455678999999999999999965    567788999999999554  456688999999988653

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=94.30  E-value=0.022  Score=46.35  Aligned_cols=36  Identities=31%  Similarity=0.472  Sum_probs=31.7

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|.||.+|+|.++.+++|+.|..||+|+.++...
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k   60 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMK   60 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--
T ss_pred             ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEeccc
Confidence            456899999999999999999999999999998644

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=94.20  E-value=0.034  Score=45.60  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=33.2

Q ss_pred             eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      -...|.++.+|+|.++++++|+.|+.||+|+.|+...
T Consensus        13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~   49 (99)
T 2ejm_A           13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK   49 (99)
T ss_dssp             CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred             CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence            3456899999999999999999999999999998654

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=94.02  E-value=0.027  Score=50.74  Aligned_cols=60  Identities=27%  Similarity=0.382  Sum_probs=51.2

Q ss_pred             ceEEEEEEEeCCCCeeeC----CCcEEEEEcCCeeeeEecCCCeEEEEE-------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVEL----DEPIAQIETDKVTIDVASPEAGVIKEL-------------------------------  155 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~----gd~l~evetdK~~~~i~ap~~G~l~~i-------------------------------  155 (470)
                      -.|+|+.+ .+..|.+-.    |+-++...++   ..+.||++|+|..+                               
T Consensus        19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~   94 (162)
T 1ax3_A           19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE   94 (162)
T ss_dssp             CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred             CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence            46999997 778888766    8889888773   47899999999988                               


Q ss_pred             ----eecCCCccCCCCeEEEEee
Q 036766          156 ----VAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       156 ----~v~eG~~v~~G~~l~~i~~  174 (470)
                          ++++||.|+.||+|+.++.
T Consensus        95 gF~~~V~~Gd~V~~G~~L~~~d~  117 (162)
T 1ax3_A           95 GFTSFVSEGDRVEPGQKLLEVDL  117 (162)
T ss_dssp             TEEESCCCCSEECSEEEEEEECH
T ss_pred             ccEEEEeCCCEEcCCCEEEEECH
Confidence                8999999999999999964

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=93.86  E-value=0.049  Score=52.40  Aligned_cols=52  Identities=19%  Similarity=0.181  Sum_probs=39.5

Q ss_pred             CCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       123 Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      |+--..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus         5 ~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~   56 (277)
T 2f1m_A            5 EPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA   56 (277)
T ss_dssp             -----CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred             eccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence            3333334445677765 467899999999999999999999999999999754

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=93.86  E-value=0.043  Score=42.82  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             eeEecCCCeEEEEE-------eecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKEL-------VAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i-------~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|.||..|+|.++       ++++|+.|..||+|+.++...
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k   46 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK   46 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence            46899999999998       899999999999999998754

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=93.68  E-value=0.056  Score=49.83  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=25.9

Q ss_pred             EEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEE
Q 036766          117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKE  154 (470)
Q Consensus       117 ~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~  154 (470)
                      ..+|++|+.|++||.||+-.      .|-+..+|+|.+
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d   53 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   53 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence            57899999999999999855      677777777643

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=93.06  E-value=0.097  Score=52.21  Aligned_cols=56  Identities=25%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             CCCCeeeCCCcEEEEEcC-CeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          121 GPGDRVELDEPIAQIETD-KVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       121 ~~Gd~V~~gd~l~evetd-K~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +.|+.-..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|+.|++|+.|+..+
T Consensus        36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~   92 (359)
T 3lnn_A           36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD   92 (359)
T ss_dssp             EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred             eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence            333333334455778875 67889999999999999999999999999999998643

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=93.02  E-value=0.041  Score=42.58  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=28.7

Q ss_pred             ecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          145 ASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       145 ~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +++.+|+|.++++++||.|..||+|+.++...
T Consensus        11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k   42 (77)
T 2l5t_A           11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDK   42 (77)
T ss_dssp             SSCCCEEEEECSCCTTCEECSCCCCCEEESSS
T ss_pred             CCCccEEEEEEEeCCCCEECCCCEEEEEEccc
Confidence            45789999999999999999999999998654

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=92.21  E-value=0.12  Score=51.22  Aligned_cols=55  Identities=22%  Similarity=0.325  Sum_probs=41.6

Q ss_pred             eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ++.|+.-..=..-..|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus        11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred             EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence            3444433333445667655 467899999999999999999999999999999754

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=92.12  E-value=0.11  Score=41.38  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=27.3

Q ss_pred             CCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          147 PEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|+|.++++++||.|..||+|+.++...
T Consensus        17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k   46 (87)
T 3crk_C           17 MTMGTVQRWEKKVGEKLSEGDLLAEIETDX   46 (87)
T ss_dssp             CCEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             CCcEEEEEEEcCCCCEEcCCCEEEEEECCc
Confidence            468999999999999999999999998654

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=92.06  E-value=0.069  Score=41.52  Aligned_cols=31  Identities=26%  Similarity=0.275  Sum_probs=27.9

Q ss_pred             cCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          146 SPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       146 ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ++.+|+|.++++++||.|..||+|+.++...
T Consensus        12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k   42 (79)
T 1ghj_A           12 SIADGTVATWHKKPGEAVKRDELIVDIETDK   42 (79)
T ss_dssp             SCSCEEECCCSSCTTSEECSSCEEEEEECSS
T ss_pred             CCCCEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence            4579999999999999999999999998654

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=92.02  E-value=0.11  Score=40.52  Aligned_cols=33  Identities=12%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             EecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          144 VASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       144 i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +-++..|.|.++++++||.|..||+|+.++...
T Consensus        10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k   42 (81)
T 1gjx_A           10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDK   42 (81)
T ss_dssp             CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred             CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence            335789999999999999999999999998654

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=91.87  E-value=0.16  Score=39.43  Aligned_cols=28  Identities=14%  Similarity=0.268  Sum_probs=26.3

Q ss_pred             CeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          149 AGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       149 ~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +|+|.++++++|+.|..||+|+.++...
T Consensus        14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~   41 (80)
T 1qjo_A           14 EVEVTEVMVKVGDKVAAEQSLITVEGDK   41 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred             CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence            8999999999999999999999998654

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=91.64  E-value=0.18  Score=40.72  Aligned_cols=30  Identities=27%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             CCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          147 PEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|+|.++++++||.|..||+|+.++...
T Consensus        16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K   45 (93)
T 1k8m_A           16 IREVTVKEWYVKEGDTVSQFDSICEVQSDK   45 (93)
T ss_dssp             SCCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred             CCCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence            468999999999999999999999998654

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=91.60  E-value=0.19  Score=44.98  Aligned_cols=46  Identities=24%  Similarity=0.234  Sum_probs=40.3

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeee-EecCCCeEEEEEe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTID-VASPEAGVIKELV  156 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~-i~ap~~G~l~~i~  156 (470)
                      .||.-+-..+.+|+.|.+||.|+-|.|-|.++- +.||.+|+|.-+.
T Consensus       107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~  153 (169)
T 3d4r_A          107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN  153 (169)
T ss_dssp             ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence            356677788999999999999999999999877 8999999997654

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.04  E-value=0.2  Score=40.89  Aligned_cols=29  Identities=34%  Similarity=0.518  Sum_probs=26.7

Q ss_pred             CCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          148 EAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       148 ~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|+|.++++++||.|..||+|+.++...
T Consensus        20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K   48 (98)
T 2dnc_A           20 EEGNIVKWLKKEGEAVSAGDALCEIETDK   48 (98)
T ss_dssp             SEECEEEESSCTTCEECTTSEEEEEECSS
T ss_pred             ccEEEEEEEcCCCCEeCCCCEEEEEEccc
Confidence            58999999999999999999999998654

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=90.98  E-value=0.2  Score=50.63  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=36.6

Q ss_pred             EEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe-----------------------------ecCCCccCCCC
Q 036766          117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV-----------------------------AKEGETVEPGT  167 (470)
Q Consensus       117 ~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~-----------------------------v~eG~~v~~G~  167 (470)
                      +.+|++||.|++||.||+-.      .|-+..+|+|.+..                             +++|+.|.+|+
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~~G~  135 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVKQGL  135 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEECTTC
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEccCc
Confidence            67899999999999999955      55666666554322                             67788888888


Q ss_pred             eEE
Q 036766          168 KIA  170 (470)
Q Consensus       168 ~l~  170 (470)
                      +|+
T Consensus       136 vla  138 (352)
T 2xhc_A          136 PLS  138 (352)
T ss_dssp             BSB
T ss_pred             EEe
Confidence            887

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=90.90  E-value=0.017  Score=45.89  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=31.1

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ++|.+|.-|+|.++++++|+.|..|++|+.++...
T Consensus         3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k   37 (85)
T 2k7v_A            3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDK   37 (85)
T ss_dssp             SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCC
T ss_pred             cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccc
Confidence            56778888999999999999999999999997654

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=90.35  E-value=0.22  Score=51.03  Aligned_cols=56  Identities=18%  Similarity=0.175  Sum_probs=42.4

Q ss_pred             CCCCeeeCCCcEEEEEcC-CeeeeEecCCCeEEEEEee-cCCCccCCCCeEEEEeeCC
Q 036766          121 GPGDRVELDEPIAQIETD-KVTIDVASPEAGVIKELVA-KEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       121 ~~Gd~V~~gd~l~evetd-K~~~~i~ap~~G~l~~i~v-~eG~~v~~G~~l~~i~~~~  176 (470)
                      +.|+--..=...+.|+.| .-...|.++.+|+|.++.+ ++||.|+.||+|+.|+..+
T Consensus       100 ~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~  157 (413)
T 3ne5_B          100 TRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD  157 (413)
T ss_dssp             EEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCS
T ss_pred             EEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHH
Confidence            333333333445566653 4568899999999999998 9999999999999998544

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=89.98  E-value=0.17  Score=42.19  Aligned_cols=30  Identities=30%  Similarity=0.454  Sum_probs=27.1

Q ss_pred             CCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          147 PEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|+|.++++++||.|..||+|+.|+...
T Consensus        19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K   48 (108)
T 2dne_A           19 MQAGTIARWEKKEGDKINEGDLIAEVETDK   48 (108)
T ss_dssp             CCEEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred             cccEEEEEEEcCCCCEecCCCEEEEEEcCc
Confidence            358999999999999999999999998654

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=89.36  E-value=0.19  Score=50.65  Aligned_cols=45  Identities=22%  Similarity=0.283  Sum_probs=37.5

Q ss_pred             CcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          130 EPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       130 d~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ..-+.|+.. -...|.++.+|+|.++++++|+.|+.||+|+.|+..
T Consensus        33 ~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~   77 (369)
T 1vf7_A           33 ELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA   77 (369)
T ss_dssp             EEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred             EEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence            334566654 467899999999999999999999999999999754

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=88.49  E-value=0.2  Score=46.20  Aligned_cols=46  Identities=24%  Similarity=0.294  Sum_probs=35.4

Q ss_pred             eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEE--------------------------E--eecCCCccCCCCeEEE
Q 036766          120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKE--------------------------L--VAKEGETVEPGTKIAV  171 (470)
Q Consensus       120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~--------------------------i--~v~eG~~v~~G~~l~~  171 (470)
                      |++|++|+.||+|+   -   ...|-|..+|+|.=                          +  +|++||.|..|+.|+.
T Consensus        85 V~dG~~V~~GdvLA---K---d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D  158 (193)
T 2xha_A           85 LRVGTKVKQGLPLS---K---NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE  158 (193)
T ss_dssp             CCTTCEECTTSBSS---T---TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred             cCCCCEEcCCCEEe---c---CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence            79999999999999   2   23456777777641                          2  7889999999998874

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=88.15  E-value=0.34  Score=41.78  Aligned_cols=30  Identities=23%  Similarity=0.361  Sum_probs=27.0

Q ss_pred             CCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          148 EAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       148 ~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      .+|+|.++++++||.|..||+|+.|+....
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~   69 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKA   69 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSSC
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEEcCcc
Confidence            579999999999999999999999986543

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=88.01  E-value=0.11  Score=40.62  Aligned_cols=30  Identities=13%  Similarity=0.159  Sum_probs=27.0

Q ss_pred             CCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          147 PEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..+|+|.++++++||.|..||+|+.++...
T Consensus        14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k   43 (80)
T 1pmr_A           14 VADATVATWHKKPGDAVVRDEVLVEIETDK   43 (80)
T ss_dssp             CSCEECCBCCCCTTCCBSSSCCBCBCCSSS
T ss_pred             CccEEEEEEECCCcCEECCCCEEEEEEccc
Confidence            468999999999999999999999997644

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=87.56  E-value=0.53  Score=43.29  Aligned_cols=45  Identities=27%  Similarity=0.398  Sum_probs=38.2

Q ss_pred             EEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCcc
Q 036766          117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETV  163 (470)
Q Consensus       117 ~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v  163 (470)
                      ..+|++||.|++|+.||+.  |..+..|-+..+|+|.=-.+.+|.++
T Consensus        63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~  107 (190)
T 2auk_A           63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTI  107 (190)
T ss_dssp             EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTE
T ss_pred             EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcce
Confidence            6789999999999999976  79999999999999976656666543

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=86.58  E-value=0.18  Score=50.32  Aligned_cols=55  Identities=27%  Similarity=0.319  Sum_probs=42.2

Q ss_pred             CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          121 GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       121 ~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      +.|+--..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.||+|+.|+..+
T Consensus        13 ~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~   67 (369)
T 4dk0_A           13 KRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDSTT   67 (369)
T ss_dssp             CEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCHH
T ss_pred             EecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCHH
Confidence            333333334445677744 4668999999999999999999999999999998643

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=85.92  E-value=0.52  Score=36.38  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETD  138 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetd  138 (470)
                      .++.-|      ..|+|.++++++|+.|..|++|+.|+..
T Consensus        42 ~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           42 MEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             EEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            455555      4689999999999999999999999853

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=85.87  E-value=0.63  Score=51.00  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=32.7

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ...|.||..|+|.++++++||.|+.||+|++++...
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK  647 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMK  647 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSS
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecC
Confidence            456999999999999999999999999999998654

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=85.15  E-value=1.2  Score=40.58  Aligned_cols=59  Identities=25%  Similarity=0.424  Sum_probs=41.8

Q ss_pred             eEEEEEEEeCCCCeee----CCCcEEEEEcCCeeeeEecCCCeEEEEE--------------------------------
Q 036766          112 DGTLAKFLKGPGDRVE----LDEPIAQIETDKVTIDVASPEAGVIKEL--------------------------------  155 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~----~gd~l~evetdK~~~~i~ap~~G~l~~i--------------------------------  155 (470)
                      .|+++.. -++-|.|=    -||-++..=++-   .|.||++|+|..+                                
T Consensus        42 ~G~vi~L-~eV~D~vFs~~~mGdG~AI~P~~g---~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLIHIGiDTV~L~G~g  117 (183)
T 3our_B           42 SGEIVNI-EDVPDVVFAEKIVGDGIAIKPTGN---KMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGEG  117 (183)
T ss_dssp             CEEEEEG-GGSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTT
T ss_pred             ceEEEEc-hhCcChHhcccCccCeEEEEcCCC---EEEeCCCeEEEEECCCCCEEEEEeCCCCEEEEEecccccccCCcc
Confidence            4666544 24444441    177777666543   6778888888776                                


Q ss_pred             ---eecCCCccCCCCeEEEEee
Q 036766          156 ---VAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       156 ---~v~eG~~v~~G~~l~~i~~  174 (470)
                         ++++||.|+.||+|+.++.
T Consensus       118 F~~~V~~Gd~Vk~Gd~L~~fD~  139 (183)
T 3our_B          118 FTRIAEEGQTVKAGDTVIEFDL  139 (183)
T ss_dssp             EEECSCTTCEECTTCEEEEECH
T ss_pred             ceEEEeCcCEEcCCCEEEEECH
Confidence               7999999999999999974

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=81.20  E-value=1.2  Score=52.00  Aligned_cols=37  Identities=24%  Similarity=0.211  Sum_probs=33.5

Q ss_pred             eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ....|.||..|+|.++++++||.|+.||+|++|+...
T Consensus      1166 ~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A         1166 DAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp             TCEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred             CCcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence            3456999999999999999999999999999998754

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=80.64  E-value=1.2  Score=51.59  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=32.5

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|.||..|+|.+++|++||.|+.||+|+.++...
T Consensus      1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK 1112 (1150)
T 3hbl_A         1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp             SEEECSSSEEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred             ceeecCceEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            46999999999999999999999999999998654

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=80.59  E-value=1  Score=49.57  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.4

Q ss_pred             eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766          142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus       142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ..|.||..|+|.++.+++||.|+.||+|++++...
T Consensus       650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEamK  684 (718)
T 3bg3_A          650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMK  684 (718)
T ss_dssp             SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESSS
T ss_pred             ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEeccc
Confidence            56999999999999999999999999999998644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	7e-87
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	4e-66
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	1e-57
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	3e-54
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	3e-51
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	3e-20
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	3e-20
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	7e-20
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	6e-19
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	1e-18
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-15
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-14
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	8e-13
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	2e-11
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	2e-06

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  263 bits (674), Expect = 7e-87
 Identities = 139/230 (60%), Positives = 184/230 (80%)

Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
           E+RVPMTRLRKRVA RL +++N+ AMLTTFNEV+M  +M LR +Y +AF ++HG++LG M
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63

Query: 301 SGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADI 360
           S +VKA V  L+  P +NA IDGDD++Y +Y D+S+AV T +GLV PV+R+ D +  ADI
Sbjct: 64  SFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI 123

Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
           EK+I  LA K  DG ++++++ GG+FTI+NGGV+GSL+STPIINPPQSAILGMH+I  RP
Sbjct: 124 EKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP 183

Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
           M V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++E+P RLLLD+
Sbjct: 184 MAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  210 bits (536), Expect = 4e-66
 Identities = 92/242 (38%), Positives = 143/242 (59%), Gaps = 4/242 (1%)

Query: 230 ATEPQLPPKER-ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDA 288
           A +P     E  E R  M+ +R+ +A  +  S++T   +T  +E D+T L+    +   A
Sbjct: 2   AAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVA-HRKKFKA 60

Query: 289 FLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGD--DIIYRDYIDISIAVGTSKGLVV 346
              + G+KL  +   VKA VS L+  P++N  ID +  +II + Y +I IA  T +GL+V
Sbjct: 61  IAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLV 120

Query: 347 PVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPP 406
           PVI++AD+     + +EIN LA+KA DG ++  EM G S TI+N G  G    TP+IN P
Sbjct: 121 PVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHP 180

Query: 407 QSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRL 466
           + AILG+  I ++P+V  G +V  PM+ ++L++DHR+IDG  A   L  IK ++ +P  L
Sbjct: 181 EVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELL 240

Query: 467 LL 468
           L+
Sbjct: 241 LM 242

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  187 bits (476), Expect = 1e-57
 Identities = 21/216 (9%), Positives = 61/216 (28%), Gaps = 15/216 (6%)

Query: 250 RKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVS 309
           R+      +        LT+  ++D+T L K          +    K   +   +     
Sbjct: 13  RREHFEFYRHRLPCGFSLTS--KIDITTLKKSL--------DDSAYKFYPV--MIYLIAQ 60

Query: 310 GLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAK 369
            +     +   I  D++I  D +D    V   +      +      +         ++ +
Sbjct: 61  AVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVME 120

Query: 370 KANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVP 429
           +    +    +       ++       +          +       I+            
Sbjct: 121 RYKSDTKLFPQGVTPENHLNISA-LPWVNFDSFNLNVANFTDYFAPIITMAKYQQEGD-- 177

Query: 430 RPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRR 465
           R ++ +++   H + DG     F+ R++++     +
Sbjct: 178 RLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKLK 213

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  179 bits (455), Expect = 3e-54
 Identities = 88/253 (34%), Positives = 123/253 (48%), Gaps = 13/253 (5%)

Query: 218 PKAPSPPPPKRTATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTN 277
           P  P     K    E           VPMTRL +  AT L  S      +T F   D+T 
Sbjct: 2   PPIPPVDFAKYGEIE----------EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITE 51

Query: 278 LMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDI--IYRDYIDIS 335
           L   R   K    EK GVKL ++   +KA    L+  P  N+ +       I + Y+ I 
Sbjct: 52  LEAFRVAQKAVA-EKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIG 110

Query: 336 IAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYG 395
            AV T  GL+VPVIRN D+ +   +  E   LA+KA    +  D M G  FTIS+ G  G
Sbjct: 111 FAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIG 170

Query: 396 SLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRR 455
               TPI+N P+ AILG+     +P+  G    PR M+ ++L+YD R+I+G  A  F +R
Sbjct: 171 GTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKR 230

Query: 456 IKDVVEEPRRLLL 468
           + D++ + R +LL
Sbjct: 231 LGDLLADIRAILL 243

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  170 bits (433), Expect = 3e-51
 Identities = 21/209 (10%), Positives = 54/209 (25%), Gaps = 22/209 (10%)

Query: 260 SQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINA 319
                       ++D+T  +K          +K+  K      F+      +   P    
Sbjct: 22  QSVAQCTYNQTVQLDITAFLKTV--------KKNKHKF--YPAFIHILARLMNAHPEFRM 71

Query: 320 VIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDG-SISI 378
            +   +++  D +     V   +      + +    +F       +       +  +   
Sbjct: 72  AMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFP 131

Query: 379 DEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVP---RPMMYI 435
                  F +S             +    +           P+   G       + +M +
Sbjct: 132 KGFIENMFFVSANPWVSFTSFDLNVANMDNFFA--------PVFTMGKYYTQGDKVLMPL 183

Query: 436 ALTYDHRLIDGREAVFFLRRIKDVVEEPR 464
           A+   H + DG      L  ++   +E +
Sbjct: 184 AIQVHHAVCDGFHVGRMLNELQQYCDEWQ 212

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (206), Expect = 3e-20
 Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           +  ++P +  ++T GT+ ++ K  G+++   + +A+IETDK TI     E G + +++  
Sbjct: 6   MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVP 65

Query: 159 EG-ETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPK 195
           EG   V  GT + +I +    ++  A      E    K
Sbjct: 66  EGTRDVPLGTPLCIIVEKEADISAFADYRP-TEVTDLK 102

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (205), Expect = 3e-20
 Identities = 20/82 (24%), Positives = 38/82 (46%)

Query: 96  GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKEL 155
           G +V   +  +GE I + T+ ++    GD V   + I ++++DK ++ + S   GVIK+L
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 156 VAKEGETVEPGTKIAVISKSGE 177
                +    G  +  I     
Sbjct: 62  YYNLDDIAYVGKPLVDIETEAL 83

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 81.3 bits (201), Expect = 7e-20
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           VD +VP + ES+ D T+A + K PGD V  DE + +IETDKV ++V +   G++  ++  
Sbjct: 3   VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62

Query: 159 EGETVEPGTKIAVIS 173
           EG TV     +  + 
Sbjct: 63  EGTTVTSRQILGRLR 77

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 78.6 bits (194), Expect = 6e-19
 Identities = 21/74 (28%), Positives = 39/74 (52%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           +P +GE I +G + K+   PGD V  D+ + +++ DK  +++ SP  G + E++  EG  
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65

Query: 163 VEPGTKIAVISKSG 176
              G  +  +   G
Sbjct: 66  ATVGQTLITLDAPG 79

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 77.9 bits (192), Expect = 1e-18
 Identities = 34/78 (43%), Positives = 48/78 (61%)

Query: 99  VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
           +D   P   ESI DGT+A + K PG+ V+ DE I  IETDKV ++V +   GVI E+V  
Sbjct: 2   IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61

Query: 159 EGETVEPGTKIAVISKSG 176
           EG+TV  G  +  +++ G
Sbjct: 62  EGDTVLSGELLGKLTEGG 79

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 98  LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVA 157
           LV+  VP +G    +  +       GD + +D+ +  +ETDK T+DV +  AGV+KE+  
Sbjct: 2   LVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKV 60

Query: 158 KEGETVEPGTKIAVISKSGE 177
           K G+ +  G  I V+   G 
Sbjct: 61  KVGDKISEGGLIVVVEAEGT 80

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 98  LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVA 157
           + +  VP +G    +  + + +   GD+V  ++ +  +E DK +++V +P AGV+KEL  
Sbjct: 2   VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59

Query: 158 KEGETVEPGTKIAVISKSGE 177
             G+ V+ G+ I +    G 
Sbjct: 60  NVGDKVKTGSLIMIFEVEGA 79

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.4 bits (149), Expect = 8e-13
 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
           VP +G    DG + + L   GD +E+++ +  +E+ K +++V SP+AGV+K +  K G+ 
Sbjct: 6   VPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK 62

Query: 163 VEPGTKIAVISKSG 176
           ++ G  I  +  + 
Sbjct: 63  LKEGDAIIELEPAA 76

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           GT++K L   GD V+  + +  +E  K+  ++ +P  G +++++ KE + V+ G  +  I
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 13/57 (22%), Positives = 29/57 (50%)

Query: 116 AKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
           AK     G +V + + +  +E  K+   + + ++G +K ++ + G+ VE    + VI
Sbjct: 23  AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVI 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.89
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.87
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.87
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.85
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.84
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.81
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.81
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.78
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.59
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.43
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	96.86
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	96.8
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	96.44
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.39
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	95.25
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	95.05
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	94.66
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	94.56
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	93.94
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	93.27
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	91.78
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	91.74
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	90.41
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	90.22
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	86.72
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	85.75
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	85.18
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	84.87
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	83.01
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	81.88
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	81.34

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-65  Score=493.13  Aligned_cols=231  Identities=60%  Similarity=1.024  Sum_probs=226.6

Q ss_pred             ccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccce
Q 036766          240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINA  319 (470)
Q Consensus       240 ~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~  319 (470)
                      .++++|++++||+||++|.+|++++||||++.+||+|+|+++|+++++.+.++.|.++||++|++||++.||.+||++|+
T Consensus         3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na   82 (233)
T d1scza_           3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA   82 (233)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred             CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence            45789999999999999999999999999999999999999999999888888899999999999999999999999999


Q ss_pred             EEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCc
Q 036766          320 VIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLS  399 (470)
Q Consensus       320 ~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~  399 (470)
                      +|+++++++++++|||+||++++||++|||++++++|+.||++++++|++++|+|+|+++|++||||||||+|++|+++|
T Consensus        83 ~~~~~~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~  162 (233)
T d1scza_          83 SIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS  162 (233)
T ss_dssp             EEETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCC
T ss_pred             EEcCCeEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766          400 TPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI  470 (470)
Q Consensus       400 tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~  470 (470)
                      +|||||||++|||+|+++++|++.+|++++|++|++||+||||++||++||+||++|+++||||+.||+|+
T Consensus       163 tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~lll~~  233 (233)
T d1scza_         163 TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV  233 (233)
T ss_dssp             CCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred             eeecCCCCceEEecccceeeccccCCeEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHhCHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=1.3e-62  Score=476.12  Aligned_cols=229  Identities=37%  Similarity=0.547  Sum_probs=219.8

Q ss_pred             CccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccc
Q 036766          239 ERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIIN  318 (470)
Q Consensus       239 ~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN  318 (470)
                      +..+++||+++||+||++|++||+++||||++.++|+|+|+++|++++.. .++.|.|+|+++|++||++.||++||.+|
T Consensus        13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~-~~~~~~k~t~~~~iikA~a~Al~~~P~~N   91 (243)
T d1dpba_          13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAV-AEKAGVKLTVLPLLLKACAYLLKELPDFN   91 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHH-HHHTTCCCCSHHHHHHHHHHHHHHSGGGG
T ss_pred             CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhh-hhhcCccccHHHHHHHHHHHHHHHhhhhh
Confidence            45567999999999999999999999999999999999999999887654 35678999999999999999999999999


Q ss_pred             eEEeCC--eEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCC
Q 036766          319 AVIDGD--DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGS  396 (470)
Q Consensus       319 ~~i~~~--~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~  396 (470)
                      +.|+++  .+++++++|||+||++++||++|||++++++|+.||++++++|++++|+|+|+++|++||||||||+|++|+
T Consensus        92 s~~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~  171 (243)
T d1dpba_          92 SSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGG  171 (243)
T ss_dssp             EEECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCC
T ss_pred             hccccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccc
Confidence            999754  788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          397 LLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       397 ~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      ++|+|||||||++|||+|++.++|++.+|++++|++|++||+||||++||++||+||++|+++||||+.|||
T Consensus       172 ~~~tpiInppq~aIlgvG~i~~~pv~~~~~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~lE~P~~lll  243 (243)
T d1dpba_         172 TAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             SCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             eeEEeeeccccceeeecccceeeEEEECCEEEEEEEEEEEEEeecccccHHHHHHHHHHHHHHHhCHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.9e-62  Score=475.16  Aligned_cols=228  Identities=39%  Similarity=0.659  Sum_probs=219.8

Q ss_pred             ccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccce
Q 036766          240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINA  319 (470)
Q Consensus       240 ~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~  319 (470)
                      .++++|+++|||+||++|++|++++||||++.|+|+|+|+++|+++|+. .++.|.|+||++|++||+++||++||.+|+
T Consensus        13 ~~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~-~~~~g~klT~~~~likA~a~AL~~~P~~Na   91 (242)
T d1b5sa_          13 PETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAI-AAEKGIKLTFLPYVVKALVSALREYPVLNT   91 (242)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHH-HHHTTCCCCSHHHHHHHHHHHHHHCGGGSC
T ss_pred             CceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhh-hhhcccccchhhHHHHHHHHHHHHhhhhhe
Confidence            3567899999999999999999999999999999999999999999864 356799999999999999999999999999


Q ss_pred             EEeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766          320 VIDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL  397 (470)
Q Consensus       320 ~i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~  397 (470)
                      +|++  +.+++++++|+|+||++++||++|||++++++++.+|+++++++++++|+|+|.++|++||||||||+|++|+.
T Consensus        92 ~~~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~  171 (242)
T d1b5sa_          92 SIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQ  171 (242)
T ss_dssp             CBCTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCS
T ss_pred             EEcCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCcc
Confidence            9987  56889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766          398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL  468 (470)
Q Consensus       398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll  468 (470)
                      +|+||+||||++|||+|++.++|++.||++++|++|+|||+||||++||++||+||++|+++||||+.|||
T Consensus       172 ~ftpii~~pq~ail~vG~i~~~pv~~dg~i~~r~~m~lslt~DHRviDGa~aa~Fl~~l~~~lE~P~~lll  242 (242)
T d1b5sa_         172 WFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM  242 (242)
T ss_dssp             CCCCCCCTTCCEEEEECCCEEEEEECSSSEEEEEEEEEEEEECTTTSCSHHHHHHHHHHHHHHHCGGGTTC
T ss_pred             ceecccccccceEEeccceEEEEEEECCeEEEEEEEEEEEEEEcchhChHHHHHHHHHHHHHHhCHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.9e-42  Score=325.34  Aligned_cols=203  Identities=11%  Similarity=0.111  Sum_probs=179.5

Q ss_pred             cceeechh-hHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccce
Q 036766          241 ERRVPMTR-LRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINA  319 (470)
Q Consensus       241 ~~~~pls~-~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~  319 (470)
                      ++.+.++. -||...+..  ++...|||+++.+||+|+|++++|+.          ++||+++++||+++||++||+||+
T Consensus         4 ~k~ID~~~W~R~~~f~~f--~~~~~P~f~it~~vDvT~l~~~~K~~----------~~sf~~~~~~av~~Al~~~P~~n~   71 (214)
T d1q23a_           4 YTTVDISQWHRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRM   71 (214)
T ss_dssp             EEECCGGGCTTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCGGGSE
T ss_pred             ceEeccccCcCHHHHHHH--hCCCCCeEEEEEEEcHHHHHHHHHHc----------CCCcHHHHHHHHHHHHHhChHhhe
Confidence            44566666 366665553  34668999999999999999988754          789999999999999999999999


Q ss_pred             EEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCC-CCCCcCCCCeEEEEeCCCCCCCC
Q 036766          320 VIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGS-ISIDEMAGGSFTISNGGVYGSLL  398 (470)
Q Consensus       320 ~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~-l~~~d~~ggtftISnlG~~G~~~  398 (470)
                      +++++++++++++|+|+||++++|+++|+|++++++++.||++++.++++++++++ +.+++++++||+|||+||+|.+.
T Consensus        72 ~~~~~~i~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~  151 (214)
T d1q23a_          72 AMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTS  151 (214)
T ss_dssp             EEETTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSE
T ss_pred             EEcCCceeEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccC
Confidence            99999999999999999999999999999999999999999999999999998875 88999999999999999999988


Q ss_pred             cccccCCC---ceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 036766          399 STPIINPP---QSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEP  463 (470)
Q Consensus       399 ~tpii~~p---~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P  463 (470)
                      +++.++.+   .++|+++|++.++    ||    |.+|||||++|||++||+|+|+|++.|+++||+.
T Consensus       152 ~~~~~~~~~~~~vpii~~Gk~~~~----~~----r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le~~  211 (214)
T d1q23a_         152 FDLNVANMDNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW  211 (214)
T ss_dssp             EEEEESCCTTCCSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCccceeeEEEecceEEE----CC----EEEEEEEEEecccccchHHHHHHHHHHHHHHhhc
Confidence            76655543   4679999987654    66    5689999999999999999999999999999974

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-40  Score=316.30  Aligned_cols=199  Identities=12%  Similarity=0.147  Sum_probs=169.1

Q ss_pred             eechh-hHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEe
Q 036766          244 VPMTR-LRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID  322 (470)
Q Consensus       244 ~pls~-~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~  322 (470)
                      +.+.. -||...+..  ++.+.|||+++.+||||+|++++|+.          ++||+++++||+++||++||+||++|+
T Consensus         6 id~~~w~Rk~~f~~f--~~~~~P~~~~t~~vDvT~l~~~~K~~----------~~sf~~~~~~a~~~Al~~~P~~n~~~~   73 (213)
T d3claa_           6 FDVKNWVRREHFEFY--RHRLPCGFSLTSKIDITTLKKSLDDS----------AYKFYPVMIYLIAQAVNQFDELRMAIK   73 (213)
T ss_dssp             CCCTTCTTHHHHHHH--HHTSCCEEEEEEEEECHHHHHHHHTS----------SCCHHHHHHHHHHHHHTTCGGGSEEEE
T ss_pred             eCcccCccHHHHHHH--hCCCCCEEEEEEEEeHHHHHHHHHHc----------CCCeeHHHHHHHHHHHHhChHhhhEec
Confidence            33433 466666664  34678999999999999999888753          789999999999999999999999999


Q ss_pred             CCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCC-CCCCcCCC-CeEEEEeCCCCCCCCcc
Q 036766          323 GDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGS-ISIDEMAG-GSFTISNGGVYGSLLST  400 (470)
Q Consensus       323 ~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~-l~~~d~~g-gtftISnlG~~G~~~~t  400 (470)
                      ++++++|+++|+|+||++++||++|+|++++.++|.+|++++.++++++|+++ +.+++..+ ++|++|++||++   ||
T Consensus        74 ~~~i~~~~~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~~~~~~~~~is~l~~~~---Ft  150 (213)
T d3claa_          74 DDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVN---FD  150 (213)
T ss_dssp             TTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCC---CS
T ss_pred             cCeEEEecccceEEEEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccccCCCcEEEeeccCceE---ee
Confidence            99999999999999999999999999999999999999999999999999985 56665554 466666666654   67


Q ss_pred             cccCCCcee------EEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhh
Q 036766          401 PIINPPQSA------ILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRR  465 (470)
Q Consensus       401 pii~~p~~a------Il~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~  465 (470)
                      +++++|+.+      |+.+|++..+    +|    |.+|||||++|||++||+|+|+||+.|+++||+|.+
T Consensus       151 ~i~~~~~~~~~~~~Pii~~Gk~~~~----~~----r~~m~lsls~dHrviDG~~aa~Fl~~lk~~le~p~k  213 (213)
T d3claa_         151 SFNLNVANFTDYFAPIITMAKYQQE----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKLK  213 (213)
T ss_dssp             CCCCCCSCCTTCCSCEEEEECCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             cccCCcccCccccccEEecCccEEE----CC----EEEEEEEEEecccccccHHHHHHHHHHHHHHhCcCC
Confidence            777777665      6777766543    44    678999999999999999999999999999999963

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-23  Score=174.92  Aligned_cols=84  Identities=26%  Similarity=0.446  Sum_probs=79.6

Q ss_pred             CCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC-ccCCCCeEEEEe
Q 036766           95 GGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE-TVEPGTKIAVIS  173 (470)
Q Consensus        95 ~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~-~v~~G~~l~~i~  173 (470)
                      ++++++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++||+|.
T Consensus         2 ~p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~   81 (102)
T d1y8ob1           2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV   81 (102)
T ss_dssp             CCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred             CCCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEe
Confidence            5678999999999999999999999999999999999999999999999999999999999999997 699999999997


Q ss_pred             eCCCC
Q 036766          174 KSGEG  178 (470)
Q Consensus       174 ~~~~~  178 (470)
                      ..+++
T Consensus        82 ~~~~~   86 (102)
T d1y8ob1          82 EKEAD   86 (102)
T ss_dssp             SSGGG
T ss_pred             cCCcc
Confidence            66554

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.87  E-value=5.8e-23  Score=163.62  Aligned_cols=77  Identities=43%  Similarity=0.667  Sum_probs=75.2

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999765

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-22  Score=163.70  Aligned_cols=82  Identities=24%  Similarity=0.371  Sum_probs=78.2

Q ss_pred             CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        96 ~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      +..++|+||+||+++++|+|++|++++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+
T Consensus         2 ~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~~   81 (87)
T d1k8ma_           2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (87)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             CccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q 036766          176 GE  177 (470)
Q Consensus       176 ~~  177 (470)
                      +.
T Consensus        82 ~~   83 (87)
T d1k8ma_          82 AL   83 (87)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=4.5e-23  Score=164.56  Aligned_cols=78  Identities=27%  Similarity=0.601  Sum_probs=75.0

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++||.|++|++|+.|+.++
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~G   79 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   79 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCSC
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            568999999999999999999999999999999999999999999999999999999999999999999999997654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.4e-23  Score=164.03  Aligned_cols=77  Identities=36%  Similarity=0.600  Sum_probs=74.6

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+..
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~eg   79 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREG   79 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeCC
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999743

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2e-20  Score=149.21  Aligned_cols=78  Identities=28%  Similarity=0.522  Sum_probs=74.2

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      |..+|+||++|+  ++++|++|++++||.|++||+|++|||||++++|+||++|+|.++++++|+.|++|++|+.|+.++
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CCeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            568999999997  489999999999999999999999999999999999999999999999999999999999998654

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.81  E-value=4.5e-21  Score=153.40  Aligned_cols=78  Identities=33%  Similarity=0.542  Sum_probs=74.5

Q ss_pred             eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766           98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG  176 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~  176 (470)
                      .++|+||+|| ++++++|++|++++||.|++||+||+|||||++++++||.+|+|.++++++|+.|++|++|+.|+.++
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g   79 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG   79 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred             cEEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence            4789999999 58999999999999999999999999999999999999999999999999999999999999998654

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.78  E-value=2.8e-19  Score=142.14  Aligned_cols=76  Identities=29%  Similarity=0.527  Sum_probs=71.9

Q ss_pred             EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766           99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus        99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|+||++|.   +|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|++|++|+.|+..+.
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~~   77 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG   77 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCCS
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCcc
Confidence            4589999994   899999999999999999999999999999999999999999999999999999999999987654

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.59  E-value=1.1e-15  Score=120.56  Aligned_cols=60  Identities=27%  Similarity=0.513  Sum_probs=59.3

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      |+|++|+|++||+|++||+|+++|+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus        17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999987

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=7.7e-14  Score=110.37  Aligned_cols=57  Identities=21%  Similarity=0.420  Sum_probs=55.4

Q ss_pred             EEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       117 ~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                      +++|++||+|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        24 ~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            688999999999999999999999999999999999999999999999999999985

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00067  Score=56.81  Aligned_cols=58  Identities=26%  Similarity=0.247  Sum_probs=43.8

Q ss_pred             eEEEEccCCCCCCceEEEEEEE-eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766           98 LVDAVVPFMGESITDGTLAKFL-KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus        98 ~~~v~~P~lg~~~~eg~I~~w~-v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      ...|-|=+.+.. .-|.|+.+. .++|+.|++|+.++.||+.|+..+|.||.+|+|.++.
T Consensus        21 ~~~iGit~~a~~-~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN   79 (127)
T d1onla_          21 TVLVGITDYAQD-ALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN   79 (127)
T ss_dssp             EEEEEECHHHHH-HHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEEC
T ss_pred             EEEEEeCHHHHh-hccccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEh
Confidence            344444444332 234455444 3899999999999999999999999999999998875

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=96.80  E-value=0.00077  Score=56.72  Aligned_cols=44  Identities=30%  Similarity=0.369  Sum_probs=38.2

Q ss_pred             EEEEEEE-eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766          113 GTLAKFL-KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV  156 (470)
Q Consensus       113 g~I~~w~-v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~  156 (470)
                      |.|+.+. .++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            4454444 3799999999999999999999999999999998875

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.44  E-value=0.00031  Score=63.70  Aligned_cols=63  Identities=27%  Similarity=0.332  Sum_probs=53.6

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK---------------------------------------------------  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK---------------------------------------------------  139 (470)
                      ..|.|.+|+|++||.|++||+|++|++..                                                   
T Consensus        22 v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~  101 (237)
T d1vf7a_          22 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  101 (237)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHH
Confidence            46999999999999999999999998651                                                   


Q ss_pred             ------eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766          140 ------VTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS  173 (470)
Q Consensus       140 ------~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~  173 (470)
                            ....+.||++|+|.+..+.+|+.+..|.....+.
T Consensus       102 ~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~~~~  141 (237)
T d1vf7a_         102 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMAT  141 (237)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEE
T ss_pred             HHhhhhcccccccchhceeeeEEeccCcEEcCCcceeeEE
Confidence                  3445999999999999999999999987655443

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.39  E-value=0.0016  Score=49.50  Aligned_cols=37  Identities=27%  Similarity=0.533  Sum_probs=33.4

Q ss_pred             eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      .-.|.||..|+|.++++++||.|..||+|+.++....
T Consensus         8 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~   44 (77)
T d1dcza_           8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKM   44 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTE
T ss_pred             CCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccCc
Confidence            3479999999999999999999999999999987653

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.0093  Score=45.49  Aligned_cols=26  Identities=42%  Similarity=0.694  Sum_probs=24.7

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEE
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIE  136 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~eve  136 (470)
                      ..|+|.+|++++||.|+.||+|++||
T Consensus        55 ~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          55 KSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            57999999999999999999999987

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.05  E-value=0.013  Score=44.41  Aligned_cols=37  Identities=16%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766           97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDK  139 (470)
Q Consensus        97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK  139 (470)
                      +.+++.-|      ..|+|.+|++++||.|+.||+|++||...
T Consensus        40 ~~~~i~a~------~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_          40 ASMEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             CEEEEECS------SSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             cEEEEEec------cccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            44555544      46999999999999999999999999764

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.016  Score=44.10  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=26.7

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDK  139 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK  139 (470)
                      ..|+|.++++++||.|+.|++|+.||++-
T Consensus        50 ~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_          50 FAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             SCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             eeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            56999999999999999999999999753

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.016  Score=44.90  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=27.9

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV  140 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~  140 (470)
                      .+|+|.++++++||.|+.|++|+.||++..
T Consensus        54 ~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~   83 (87)
T d1k8ma_          54 YDGVIKKLYYNLDDIAYVGKPLVDIETEAL   83 (87)
T ss_dssp             SCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence            579999999999999999999999998764

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.94  E-value=0.015  Score=52.04  Aligned_cols=42  Identities=21%  Similarity=0.351  Sum_probs=35.6

Q ss_pred             EEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766          133 AQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS  175 (470)
Q Consensus       133 ~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~  175 (470)
                      ..|+..+ .++|.|+.+|+|.+++|++|+.|+.||+|+.|+..
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   49 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA   49 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCEECCCCEEEEEehH
Confidence            4566544 46799999999999999999999999999999643

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.27  E-value=0.054  Score=40.88  Aligned_cols=27  Identities=30%  Similarity=0.527  Sum_probs=25.3

Q ss_pred             ceEEEEEEEeCCCCeeeCCCcEEEEEc
Q 036766          111 TDGTLAKFLKGPGDRVELDEPIAQIET  137 (470)
Q Consensus       111 ~eg~I~~w~v~~Gd~V~~gd~l~evet  137 (470)
                      ..|+|.++++++||.|+.|++|++|+.
T Consensus        51 ~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          51 ADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             eeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            569999999999999999999999985

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.78  E-value=0.041  Score=41.70  Aligned_cols=31  Identities=16%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             CCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          147 PEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..+|+|.++++++||.|+.||+|+.++....
T Consensus        13 ~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~   43 (80)
T d1laba_          13 IHEGEIVKWFVKPGDEVNEDDVLCEVQNDKA   43 (80)
T ss_dssp             TCSEEEEECCCSSCCEECSSCCCEEEECSSC
T ss_pred             ceeEEEEEEEeCCCCEEeeCcCEEEEEcccE
Confidence            3579999999999999999999999987653

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.083  Score=41.83  Aligned_cols=30  Identities=23%  Similarity=0.361  Sum_probs=27.3

Q ss_pred             CCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          148 EAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       148 ~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|+|.++++++||.|..||+|+.++++..
T Consensus        18 ~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~   47 (102)
T d1y8ob1          18 TMGTVQRWEKKVGEKLSEGDLLAEIETDKA   47 (102)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSSC
T ss_pred             cEEEEEEEEeCCCCEEecCccEEEEEcCcE
Confidence            579999999999999999999999987654

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.41  E-value=0.088  Score=39.77  Aligned_cols=31  Identities=13%  Similarity=0.159  Sum_probs=27.2

Q ss_pred             CCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          147 PEAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..+++|.++++++||.|+.||+|+.++....
T Consensus        13 ~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~   43 (81)
T d1gjxa_          13 HENVDIIAVEVNVGDTIAVDDTLITLETDKA   43 (81)
T ss_dssp             CSSEEEEEECCCSSCBCCSSCCCEEEECSSC
T ss_pred             CcEEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence            3468999999999999999999999986654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=90.22  E-value=0.035  Score=42.10  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=27.0

Q ss_pred             CCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766          148 EAGVIKELVAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       148 ~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      ..|+|.++++++||.|..||+|+.++....
T Consensus        15 ~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~   44 (80)
T d1pmra_          15 ADATVATWHKKPGDAVVRDEVLVEIETDKV   44 (80)
T ss_dssp             SCEECCBCCCCTTCCBSSSCCBCBCCSSSC
T ss_pred             cEEEEEEEEeCCCCEEcCCCEEEEEEcCce
Confidence            579999999999999999999999986654

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=86.72  E-value=0.15  Score=43.33  Aligned_cols=58  Identities=14%  Similarity=0.191  Sum_probs=39.1

Q ss_pred             eEEEEEEEeCCCCeeeCCCcEEEEEcCC---------eeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766          112 DGTLAKFLKGPGDRVELDEPIAQIETDK---------VTIDVASPEAGVIKELVAKEGETVEPGTKIAVI  172 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V~~gd~l~evetdK---------~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i  172 (470)
                      +|+--+++|++||+|++||+|+++.-++         .-+-+.-.....   +.......|..|++|+.+
T Consensus        87 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~---~~~~~~g~V~~Gd~i~~i  153 (154)
T d2gpra_          87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKT---LEIVKMGEVKQGDVVAIL  153 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCC---CSCBCCEEECTTCEEEEE
T ss_pred             CCceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCce---EEecccCcCcCCCEEEEe
Confidence            6788899999999999999999997542         222222222221   222333468999999876

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=85.75  E-value=0.53  Score=39.55  Aligned_cols=19  Identities=26%  Similarity=0.487  Sum_probs=17.5

Q ss_pred             eecCCCccCCCCeEEEEee
Q 036766          156 VAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       156 ~v~eG~~v~~G~~l~~i~~  174 (470)
                      ++++||.|+.||+|+.++.
T Consensus        88 ~v~~Gd~V~~G~~L~~~D~  106 (150)
T d2f3ga_          88 IAEEGQRVKVGDTVIEFDL  106 (150)
T ss_dssp             CSCTTCEECTTCEEEEECH
T ss_pred             EecCCCEECCCCEEEEEcH
Confidence            8999999999999999974

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=85.18  E-value=0.58  Score=39.63  Aligned_cols=59  Identities=27%  Similarity=0.449  Sum_probs=39.4

Q ss_pred             eEEEEEEEeCCCCee----eCCCcEEEEEcCCeeeeEecCCCeEEEEE--------------------------------
Q 036766          112 DGTLAKFLKGPGDRV----ELDEPIAQIETDKVTIDVASPEAGVIKEL--------------------------------  155 (470)
Q Consensus       112 eg~I~~w~v~~Gd~V----~~gd~l~evetdK~~~~i~ap~~G~l~~i--------------------------------  155 (470)
                      .|+++.. -+..|.|    --||-++..=++.   .|-||++|+|..+                                
T Consensus        17 ~G~vi~L-~~V~D~vFs~~~~G~G~aI~P~~~---~v~AP~~G~I~~i~~T~HAigi~t~~G~evLiHiGiDTV~L~G~g   92 (158)
T d1gpra_          17 TGEIHPI-TDVPDQVFSGKMMGDGFAILPSEG---IVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG   92 (158)
T ss_dssp             SEEEEEG-GGSSSHHHHTTSSCEEEEEEESSC---EEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSCGGGTTTT
T ss_pred             CcEEEEh-hhCCChHhccCCccceEEEEEcCC---EEEEeeCeEEEEEcCCCCEEEEEeCCCeEEEEEEeecccccCCcc
Confidence            3555542 3444444    2256666655543   4677777777666                                


Q ss_pred             ---eecCCCccCCCCeEEEEee
Q 036766          156 ---VAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       156 ---~v~eG~~v~~G~~l~~i~~  174 (470)
                         ++++||.|+.||+|+.++.
T Consensus        93 F~~~v~~Gd~Vk~G~~L~~~D~  114 (158)
T d1gpra_          93 FTSFVSEGDRVEPGQKLLEVDL  114 (158)
T ss_dssp             EEECCCTTCEECTTCEEEEECH
T ss_pred             eEEEEcCCCEEcCCCEEEEeCH
Confidence               8999999999999999974

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.87  E-value=0.76  Score=35.96  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=32.8

Q ss_pred             CeeeeEecCCCeEEEEE-------------------------------eecCCCccCCCCeEEEEeeCCC
Q 036766          139 KVTIDVASPEAGVIKEL-------------------------------VAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       139 K~~~~i~ap~~G~l~~i-------------------------------~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      |-..+|.|+.+|+|..+                               +++.||.|..|++|+++-..++
T Consensus         3 ~~~~~v~A~~~G~v~~id~~~iG~~~~~LGaGR~~~~D~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~   72 (103)
T d1brwa3           3 AYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP   72 (103)
T ss_dssp             SEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred             CeEEEEECCCCEEEEEEeHHHHHHHHHHhCCCcccccCccCcccceEEeccCCCEEcCCCeEEEEEcCCc
Confidence            44667889999998887                               7889999999999999986543

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=83.01  E-value=0.69  Score=38.98  Aligned_cols=19  Identities=16%  Similarity=0.396  Sum_probs=17.4

Q ss_pred             eecCCCccCCCCeEEEEee
Q 036766          156 VAKEGETVEPGTKIAVISK  174 (470)
Q Consensus       156 ~v~eG~~v~~G~~l~~i~~  174 (470)
                      ++++||.|+.||+|+.++.
T Consensus        94 ~v~~Gd~V~~G~~L~~~D~  112 (154)
T d2gpra_          94 FVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             CCCTTCEECTTCEEEEECH
T ss_pred             EecCCCEEcCCCEEEEEcH
Confidence            8999999999999999974

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=1.2  Score=34.85  Aligned_cols=39  Identities=15%  Similarity=0.388  Sum_probs=31.2

Q ss_pred             CeeeeEecCCCeEEEEE-----------------------------eecCCCccCCCCeEEEEeeCCC
Q 036766          139 KVTIDVASPEAGVIKEL-----------------------------VAKEGETVEPGTKIAVISKSGE  177 (470)
Q Consensus       139 K~~~~i~ap~~G~l~~i-----------------------------~v~eG~~v~~G~~l~~i~~~~~  177 (470)
                      |...+|.|+.+|+|..+                             +++.||.|..|++|++|-..++
T Consensus         3 ~~~~~i~A~~~G~V~~id~~~lG~~~~~LGaGR~~d~ID~~vGi~l~~k~Gd~V~~G~~l~~ih~~~~   70 (105)
T d1uoua3           3 REQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP   70 (105)
T ss_dssp             SEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred             CeeEEEecCCCEEEEEEeHHHHHHHHHHhCCCCCCCccCccccEEEeecCCCEEcCCCeEEEEECCCH
Confidence            34567777777777766                             6889999999999999987664

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.34  E-value=0.51  Score=37.71  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             EEEEEEEeCCCCeeeCCCcEEEEEc
Q 036766          113 GTLAKFLKGPGDRVELDEPIAQIET  137 (470)
Q Consensus       113 g~I~~w~v~~Gd~V~~gd~l~evet  137 (470)
                      +--+.|++++|+.|++||.|++|+-
T Consensus        70 ~i~~~~~~~DG~~v~~G~~I~~i~G   94 (115)
T d1qpoa2          70 GYRVLDRVEDGARVPPGEALMTLEA   94 (115)
T ss_dssp             SEEEEEECCTTCEECTTCEEEEEEE
T ss_pred             ccceeeecCCCCEEecceeEEEEec
Confidence            4557899999999999999999984