Citrus Sinensis ID: 036770


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060-
MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS
cccHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
cHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHEEcHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHEEEHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccEEEccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccc
MAAEKLRDLSQPMDVALLDATVAAFYgtgskeerTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWnalpveqrdgMKNYISEVIVQLSsneasfreERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSwiplgyifespLLETLlkffpmpsyrnlTLQCLTevgalnfgdfynVQYVNMYNVFMVQLQtilppttnipeayahgnsEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAhnnlenpavtanmmglpmpllpsvvDGIGAQLLQRRQLYAVPLSKLRMLMICRmakpeevlivedengnivretmkDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKqlsgedwtwnNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCemtkgkdnkaVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMhethpgvqdmACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLAttvadlephqihTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISssissggpfaskTSYVKLLRSVKRETLKLIETFLdkaedqpqigkqnvpdarESEVLSLFATIINKYkgamiddvPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTdtfhkpgfKLHVLVLQHLFCLvesgllteplwdaatipypypnnamFVREYTIKLLgtsfpnmtaAEVTQFVDGLLESRNDLSTFKNHIRDFLVqskefsaqdnKDLYAEEAAAQRERERQRMLsipgliapneiqdemvds
maaeklrdlsqpmDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAkpeevlivedengnivretmkdndVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISssissggpfaSKTSYVKLLRSVKRETLKLIEtfldkaedqpqigkqnvpdareSEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQskefsaqdnkDLYAEEAAAQRERERQRMlsipgliapneiqdemvds
MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEkqmlkklskqlsGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELisssissggPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKDLYaeeaaaqrererqrMLSIPGLIAPNEIQDEMVDS
**************VALLDATVAAFYGTG******AADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEM****IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDH*************QLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLD*******************EVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQ***********************************************
**AEKLRDLSQPMDVALLDATVAAF*********TAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSI*************VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAE*******************IAPN*********
********LSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEA*********RMLSIPGLIAPNEIQDEMVDS
***EKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERE*****SIPGLIAP**********
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MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPxxxxxxxxxxxxxxxxxxxxxDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1061 2.2.26 [Sep-21-2011]
Q6P5F91071 Exportin-1 OS=Mus musculu yes no 0.976 0.967 0.499 0.0
Q80U961071 Exportin-1 OS=Rattus norv yes no 0.976 0.967 0.498 0.0
O149801071 Exportin-1 OS=Homo sapien yes no 0.976 0.967 0.496 0.0
P140681078 Exportin-1 OS=Schizosacch yes no 0.981 0.965 0.478 0.0
Q54EV71057 Exportin-1 OS=Dictyosteli yes no 0.967 0.971 0.466 0.0
Q9TVM21063 Exportin-1 OS=Drosophila yes no 0.971 0.969 0.460 0.0
P308221084 Exportin-1 OS=Saccharomyc yes no 0.988 0.967 0.410 0.0
Q54PQ81135 Exportin-5 OS=Dictyosteli no no 0.191 0.178 0.254 1e-14
Q9HAV4 1204 Exportin-5 OS=Homo sapien no no 0.152 0.134 0.277 2e-11
Q924C1 1204 Exportin-5 OS=Mus musculu no no 0.161 0.142 0.276 1e-09
>sp|Q6P5F9|XPO1_MOUSE Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1085 bits (2805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1083 (49%), Positives = 742/1083 (68%), Gaps = 47/1083 (4%)

Query: 2    AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS 61
            AA +L D SQ +D+ LLD  V   Y  G   ++  A ++L  L+ +PD W +V  IL+ S
Sbjct: 12   AARQLLDFSQKLDINLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 70

Query: 62   KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKL 121
            +N+NTK++ LQ+LE VIK RW  LP  Q +G+K Y+  +I++ SS+     +E++Y+ KL
Sbjct: 71   QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKL 130

Query: 122  NIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQK 181
            N+ILVQILK EWP  W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ K
Sbjct: 131  NMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK 190

Query: 182  IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241
             K LK S+ +EF  I +LC +V+  SQ   L+ ATL TL  FL+WIPLGYIFE+ L+ TL
Sbjct: 191  AKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTL 250

Query: 242  L-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
            + KF  +P +RN++L+CLTE+  ++    Y  Q+  ++ + M+QL+ +LP  TNI  AY+
Sbjct: 251  IYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYS 309

Query: 301  HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
            +G  +EQ FIQNL+LF  +F K H ++LE       AL+  L Y++ +S V+ETE+FK+C
Sbjct: 310  NGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC 369

Query: 361  LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQ---LLQRRQLYAVPL 417
            L+YWN    EL+      E+P  T+       PLL       G+Q   +  RRQLY   L
Sbjct: 370  LEYWNHLAAELYR-----ESPFSTS-----ASPLLS------GSQHFDIPPRRQLYLTVL 413

Query: 418  SKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 477
            SK+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D +  YK MRETL+YL+HLD+ DTE
Sbjct: 414  SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTE 473

Query: 478  KQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKG 537
              M KKL  Q++G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE  +G
Sbjct: 474  IIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRG 533

Query: 538  KDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597
            KDNKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI Q
Sbjct: 534  KDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 593

Query: 598  KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657
            KC+R FV VQVGE  PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D   +E  
Sbjct: 594  KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 653

Query: 658  LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717
            +++ MLLPNQ W  II QA ++VD LKD + ++ + +IL+TN     A+G  F+ Q+  I
Sbjct: 654  IEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 713

Query: 718  FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG 777
            +LDMLNVYK  SE IS++I + G   +K   ++ +R+VKRETLKLI  ++ ++ D   + 
Sbjct: 714  YLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVA 773

Query: 778  ---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEM 822
                           ++NVP ARE EVLS  A I+NK  G +  ++P+IF+A+F+CTL M
Sbjct: 774  ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNM 833

Query: 823  ITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETG 882
            I K+FE+YPEHR  FF LL+A+ +HCFPA + +   Q KLV+DSIIWAF+HT RN+A+TG
Sbjct: 834  INKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTG 893

Query: 883  LNLLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLV 941
            L +L  +L+N    E   Q FY+TYF  I Q IF+V+TDT H  G  +H  +L ++F LV
Sbjct: 894  LQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV 953

Query: 942  ESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDL 1001
            E G ++ PL     +     NN MF+++Y   LL ++FP++  A+V  FV GL     D+
Sbjct: 954  EEGKISTPLNPGNPV-----NNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDI 1008

Query: 1002 STFKNHIRDFLVQSKEFSAQDNKDLYAEE---AAAQRERERQRM-LSIPGLIAPNEIQDE 1057
              FK H+RDFLVQ KEF+ +D  DL+ EE   A  Q + E+ ++ +S+PG++ P+EI +E
Sbjct: 1009 PAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEE 1068

Query: 1058 MVD 1060
            M D
Sbjct: 1069 MCD 1071




Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap.
Mus musculus (taxid: 10090)
>sp|Q80U96|XPO1_RAT Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1 Back     alignment and function description
>sp|O14980|XPO1_HUMAN Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1 Back     alignment and function description
>sp|P14068|XPO1_SCHPO Exportin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xpo1 PE=1 SV=3 Back     alignment and function description
>sp|Q54EV7|XPO1_DICDI Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2 Back     alignment and function description
>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1 Back     alignment and function description
>sp|P30822|XPO1_YEAST Exportin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRM1 PE=1 SV=1 Back     alignment and function description
>sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1 Back     alignment and function description
>sp|Q9HAV4|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1 Back     alignment and function description
>sp|Q924C1|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1061
2254548131076 PREDICTED: exportin-1 isoform 1 [Vitis v 1.0 0.986 0.915 0.0
2241266551076 predicted protein [Populus trichocarpa] 1.0 0.986 0.914 0.0
3594898991069 PREDICTED: exportin-1 isoform 3 [Vitis v 0.993 0.985 0.908 0.0
2241449131076 predicted protein [Populus trichocarpa] 1.0 0.986 0.901 0.0
3594898971061 PREDICTED: exportin-1 isoform 2 [Vitis v 0.985 0.985 0.902 0.0
2555579791069 chromosome region maintenance protein 1/ 0.988 0.981 0.907 0.0
4494387991076 PREDICTED: exportin-1-like [Cucumis sati 1.0 0.986 0.897 0.0
3565434381077 PREDICTED: exportin-1-like isoform 1 [Gl 1.0 0.985 0.886 0.0
3565384631077 PREDICTED: exportin-1-like isoform 1 [Gl 1.0 0.985 0.883 0.0
2978077251076 hypothetical protein ARALYDRAFT_909689 [ 1.0 0.986 0.872 0.0
>gi|225454813|ref|XP_002275630.1| PREDICTED: exportin-1 isoform 1 [Vitis vinifera] gi|147799770|emb|CAN61845.1| hypothetical protein VITISV_008353 [Vitis vinifera] gi|297737334|emb|CBI26535.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2063 bits (5345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 985/1076 (91%), Positives = 1035/1076 (96%), Gaps = 15/1076 (1%)

Query: 1    MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
            MAAEKLRDLSQP+DVALLDATVAAFYGTGSKEERTAADQILR+LQNNPDMWLQVVHILQ+
Sbjct: 1    MAAEKLRDLSQPIDVALLDATVAAFYGTGSKEERTAADQILRELQNNPDMWLQVVHILQS 60

Query: 61   SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
            ++NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 61   TQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRRERLYVNK 120

Query: 121  LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
            LNIILVQ+LKHEWPARWRSFIPDLV+AAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 121  LNIILVQVLKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180

Query: 181  KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
            KIKELKQSLNSEFQLIHELCLYVLSASQRT+LIRATL+TLHAFLSWIPLGYIFESPLLET
Sbjct: 181  KIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLATLHAFLSWIPLGYIFESPLLET 240

Query: 241  LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
            LLKFFP+PSYRNLTLQCLTEV ALNFGDFYN+QYV MYN+FMVQLQ+ILP TTNIPEAYA
Sbjct: 241  LLKFFPVPSYRNLTLQCLTEVAALNFGDFYNLQYVKMYNIFMVQLQSILPTTTNIPEAYA 300

Query: 301  HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
            HG+SEEQAFIQNLALFFTSF+K HIRVLES+QENISALL+GLEYLI ISYVD+TEVFKVC
Sbjct: 301  HGSSEEQAFIQNLALFFTSFYKSHIRVLESSQENISALLLGLEYLIGISYVDDTEVFKVC 360

Query: 361  LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
            LDYWNS VLELF+AH+NL+NPAV ANMMGL +PL+P +VDG+G+QLLQRRQLY+ P+SKL
Sbjct: 361  LDYWNSLVLELFEAHHNLDNPAVAANMMGLQIPLIPGMVDGLGSQLLQRRQLYSGPMSKL 420

Query: 421  RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
            R+LMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM
Sbjct: 421  RLLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480

Query: 481  LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
            LKKLSKQL GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 481  LKKLSKQLKGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDN 540

Query: 541  KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
            KAVIASNIMYVVGQYP+FLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 541  KAVIASNIMYVVGQYPKFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600

Query: 601  RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
            RKFVI+QVGENEPFVSELLSGL +T+ADLEPHQIHTFYESVGHMIQAESD QKR+EYLQR
Sbjct: 601  RKFVIIQVGENEPFVSELLSGLPSTIADLEPHQIHTFYESVGHMIQAESDPQKRDEYLQR 660

Query: 661  LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
            LM LPNQKW+EII QARQSVDFLKDQDVIRTVLNILQTNTSVA++LGT+FLSQI++IFLD
Sbjct: 661  LMELPNQKWAEIIGQARQSVDFLKDQDVIRTVLNILQTNTSVATSLGTYFLSQITLIFLD 720

Query: 721  MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
            MLNVY+MYSELIS+SI+ GGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ 
Sbjct: 721  MLNVYRMYSELISNSIAEGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQF 780

Query: 780  --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
                          NVPDARESEVLSLFATIINKYKGAMI+DVPRIFEA FQCTLEMITK
Sbjct: 781  VPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIEDVPRIFEASFQCTLEMITK 840

Query: 826  NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
            NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 841  NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 900

Query: 886  LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
            LLEMLKNFQASEFCNQFYRTYF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG 
Sbjct: 901  LLEMLKNFQASEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGA 960

Query: 946  LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
            LTEPLWD +T+ YPYPNN MFVREYTIKLL TSFPNMT +EVTQFV GL ESRNDLSTFK
Sbjct: 961  LTEPLWDVSTVAYPYPNNTMFVREYTIKLLSTSFPNMTTSEVTQFVTGLFESRNDLSTFK 1020

Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
            NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEM+DS
Sbjct: 1021 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1076




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126655|ref|XP_002319892.1| predicted protein [Populus trichocarpa] gi|222858268|gb|EEE95815.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359489899|ref|XP_003633992.1| PREDICTED: exportin-1 isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224144913|ref|XP_002325460.1| predicted protein [Populus trichocarpa] gi|222862335|gb|EEE99841.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359489897|ref|XP_003633991.1| PREDICTED: exportin-1 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557979|ref|XP_002520018.1| chromosome region maintenance protein 1/exportin, putative [Ricinus communis] gi|223540782|gb|EEF42342.1| chromosome region maintenance protein 1/exportin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449438799|ref|XP_004137175.1| PREDICTED: exportin-1-like [Cucumis sativus] gi|449476468|ref|XP_004154745.1| PREDICTED: exportin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543438|ref|XP_003540167.1| PREDICTED: exportin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356538463|ref|XP_003537723.1| PREDICTED: exportin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297807725|ref|XP_002871746.1| hypothetical protein ARALYDRAFT_909689 [Arabidopsis lyrata subsp. lyrata] gi|297317583|gb|EFH48005.1| hypothetical protein ARALYDRAFT_909689 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1061
TAIR|locus:21482161075 XPO1A "AT5G17020" [Arabidopsis 0.999 0.986 0.842 0.0
TAIR|locus:20977501076 XPO1B "AT3G03110" [Arabidopsis 1.0 0.986 0.797 0.0
UNIPROTKB|E1BE981071 XPO1 "Uncharacterized protein" 0.978 0.969 0.486 4.9e-275
UNIPROTKB|E2R9K41071 XPO1 "Uncharacterized protein" 0.978 0.969 0.486 4.9e-275
MGI|MGI:21440131071 Xpo1 "exportin 1, CRM1 homolog 0.978 0.969 0.486 4.9e-275
RGD|6205171071 Xpo1 "exportin 1, CRM1 homolog 0.978 0.969 0.485 8e-275
UNIPROTKB|F1NVE51071 XPO1 "Uncharacterized protein" 0.978 0.969 0.485 1e-274
UNIPROTKB|Q9PW901071 Q9PW90 "CRM1/XPO1 protein" [Xe 0.978 0.969 0.484 9.1e-274
UNIPROTKB|O149801071 XPO1 "Exportin-1" [Homo sapien 0.978 0.969 0.483 1.3e-272
ZFIN|ZDB-GENE-070530-61074 xpo1b "exportin 1 (CRM1 homolo 0.976 0.964 0.480 5.9e-263
TAIR|locus:2148216 XPO1A "AT5G17020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4644 (1639.8 bits), Expect = 0., P = 0.
 Identities = 906/1076 (84%), Positives = 968/1076 (89%)

Query:     1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
             MAAEKLRDLSQP+DV +LDATVAAF+ TGSKEER AADQILRDLQ NPDMWLQVVHILQN
Sbjct:     1 MAAEKLRDLSQPIDVGVLDATVAAFFVTGSKEERAAADQILRDLQANPDMWLQVVHILQN 60

Query:    61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
             + +L+TKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct:    61 TNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRSERLYVNK 120

Query:   121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
             LN+ILVQI+KH+WPA+W SFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct:   121 LNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180

Query:   181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
             KIKELKQSLNSEF+LIHELCLYVLSASQR DLIRATLS LHA+LSWIPLGYIFES LLET
Sbjct:   181 KIKELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESTLLET 240

Query:   241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
             LLKFFP+P+YRNLT+QCLTEV ALNFGDFYNVQYV MY +F+ QL+ ILPP+T IPEAY+
Sbjct:   241 LLKFFPVPAYRNLTIQCLTEVAALNFGDFYNVQYVKMYTIFIGQLRIILPPSTKIPEAYS 300

Query:   301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
              G+ EEQAFIQNLALFFTSFFKFHIRVLEST E +S LL GLEYLINISYVD+TEVFKVC
Sbjct:   301 SGSGEEQAFIQNLALFFTSFFKFHIRVLESTPEVVSLLLAGLEYLINISYVDDTEVFKVC 360

Query:   361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
             LDYWNS VLELFDAH+N +NPAV+A++MGL  P LP +VDG+G+Q++QRRQLY+ P+SKL
Sbjct:   361 LDYWNSLVLELFDAHHNSDNPAVSASLMGL-QPFLPGMVDGLGSQVMQRRQLYSHPMSKL 419

Query:   421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXXX 480
             R LMI RMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDH+DTE   
Sbjct:   420 RGLMINRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHDDTEKQM 479

Query:   481 XXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
                      GE+W WNNLNTLCWAIGSISGSM E+QENRFLVMVIRDLLNLCE+TKGKDN
Sbjct:   480 LRKLNKQLSGEEWAWNNLNTLCWAIGSISGSMAEDQENRFLVMVIRDLLNLCEITKGKDN 539

Query:   541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
             KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct:   540 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 599

Query:   601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
             RKFVIVQVGENEPFVSELL+GLATTV DLEPHQIH+FYESVG+MIQAESD QKR+EYLQR
Sbjct:   600 RKFVIVQVGENEPFVSELLTGLATTVQDLEPHQIHSFYESVGNMIQAESDPQKRDEYLQR 659

Query:   661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
             LM LPNQKW+EII QAR SV+FLKDQ VIRTVLNILQTNTS A++LGT+FLSQIS+IFLD
Sbjct:   660 LMALPNQKWAEIIGQARHSVEFLKDQVVIRTVLNILQTNTSAATSLGTYFLSQISLIFLD 719

Query:   721 MLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
             MLNVY+MYSEL         P+ASKTS+VKLLRSVKRETLKLIETFLDKAEDQP IGKQ 
Sbjct:   720 MLNVYRMYSELVSTNITEGGPYASKTSFVKLLRSVKRETLKLIETFLDKAEDQPHIGKQF 779

Query:   780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
                           NVPDARESEVLSLFATIINKYK  M+DDVP IFEA+FQCTLEMITK
Sbjct:   780 VPPMMESVLGDYARNVPDARESEVLSLFATIINKYKATMLDDVPHIFEAVFQCTLEMITK 839

Query:   826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
             NFEDYPEHRLKFFSLLRAIAT CFPALI+LSS QLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct:   840 NFEDYPEHRLKFFSLLRAIATFCFPALIKLSSPQLKLVMDSIIWAFRHTERNIAETGLNL 899

Query:   886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
             LLEMLKNFQ SEFCNQFYR+YF+ IEQEIFAVLTDTFHKPGFKLHVLVLQ LFCL ESG 
Sbjct:   900 LLEMLKNFQQSEFCNQFYRSYFMQIEQEIFAVLTDTFHKPGFKLHVLVLQQLFCLPESGA 959

Query:   946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
             LTEPLWDA T+PYPYP+N  FVREYTIKLL +SFPNMTAAEVTQFV+GL ESRND S FK
Sbjct:   960 LTEPLWDATTVPYPYPDNVAFVREYTIKLLSSSFPNMTAAEVTQFVNGLYESRNDPSGFK 1019

Query:  1006 NHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXXMLSIPGLIAPNEIQDEMVDS 1061
             N+IRDFLVQSKEFSAQDNKDLY              MLSIPGLIAPNEIQDEMVDS
Sbjct:  1020 NNIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1075




GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS;TAS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0004872 "receptor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0006611 "protein export from nucleus" evidence=ISS
GO:0009553 "embryo sac development" evidence=IGI
GO:0009555 "pollen development" evidence=IGI
GO:0009846 "pollen germination" evidence=IGI
GO:0009860 "pollen tube growth" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
GO:0000741 "karyogamy" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
TAIR|locus:2097750 XPO1B "AT3G03110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BE98 XPO1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9K4 XPO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2144013 Xpo1 "exportin 1, CRM1 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620517 Xpo1 "exportin 1, CRM1 homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVE5 XPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9PW90 Q9PW90 "CRM1/XPO1 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|O14980 XPO1 "Exportin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070530-6 xpo1b "exportin 1 (CRM1 homolog, yeast) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P14068XPO1_SCHPONo assigned EC number0.47800.98110.9656yesno
Q54EV7XPO1_DICDINo assigned EC number0.46630.96790.9716yesno
Q9TVM2XPO1_DROMENo assigned EC number0.46010.97170.9698yesno
O14980XPO1_HUMANNo assigned EC number0.49670.97640.9673yesno
Q80U96XPO1_RATNo assigned EC number0.49860.97640.9673yesno
P30822XPO1_YEASTNo assigned EC number0.41030.98860.9677yesno
Q6P5F9XPO1_MOUSENo assigned EC number0.49950.97640.9673yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00014046001
SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shotgun sequence); (1076 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00032600001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (241 aa)
     0.827
GSVIVG00032601001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (254 aa)
     0.825
GSVIVG00034551001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (267 aa)
     0.824
GSVIVG00029274001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (752 aa)
       0.800
GSVIVG00028763001
RecName- Full=DNA topoisomerase 2; EC=5.99.1.3;; Control of topological states of DNA by transi [...] (1489 aa)
     0.737
GSVIVG00024067001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (200 aa)
     0.722
GSVIVG00026673001
SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (504 aa)
     0.716
GSVIVG00008629001
SubName- Full=Chromosome undetermined scaffold_203, whole genome shotgun sequence; (922 aa)
      0.682
GSVIVG00032223001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (220 aa)
     0.637
GSVIVG00017939001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (419 aa)
      0.632

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1061
COG51011053 COG5101, CRM1, Importin beta-related nuclear trans 0.0
smart01102321 smart01102, CRM1_C, CRM1 C terminal 1e-128
pfam08767279 pfam08767, CRM1_C, CRM1 C terminal 1e-115
pfam08389147 pfam08389, Xpo1, Exportin 1-like protein 8e-47
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 2e-14
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 3e-11
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 2e-04
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
 Score =  956 bits (2472), Expect = 0.0
 Identities = 439/1054 (41%), Positives = 612/1054 (58%), Gaps = 35/1054 (3%)

Query: 4    EKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKN 63
            E + +  + +D+ALLD  V  FY  G   ++  A +IL   Q  PD W +  +IL NSK 
Sbjct: 2    EGILEFDKDLDIALLDKVVTTFY-QGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKL 60

Query: 64   LNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNI 123
              +K+ AL +L+ +I  +W  LP   R G++NY+ +++++ S ++    +++  +NKL++
Sbjct: 61   PQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDL 120

Query: 124  ILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIK 183
             LVQILK EWP  W +FIP+L+  ++ S  +CEN M +LKLLSEEVFDFS  +MTQ K +
Sbjct: 121  TLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKR 180

Query: 184  ELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL- 242
             LK  +  EF  I  LC  +L  S+   LI ATL +L  FL WIPL YIFE+ ++E +L 
Sbjct: 181  LLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLE 240

Query: 243  KFFPMPSYRNLTLQCLTEVGALNFGDFYNV----QYVNMYNVFMVQLQT-ILPPTTNIPE 297
             F  MP  R  TL CLTE+  L      N       V  +            P   +I E
Sbjct: 241  HFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYE 300

Query: 298  AYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVF 357
             Y   +  EQ F+Q LA F +S ++ +I +LE+ +E    LL    YLI IS ++E E+F
Sbjct: 301  VYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEA-REMAENLLNAHGYLIQISRINEREIF 359

Query: 358  KVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPL 417
            K  L+YWN  V +L+     L    ++  +         S      +    R+ +Y   L
Sbjct: 360  KTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGIL 419

Query: 418  SKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 477
            S+LR+++I  M +PEEVLIVE++ G IVRE +K+ D +  YK MRE L+YL+HL  +DTE
Sbjct: 420  SQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTE 479

Query: 478  KQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKG 537
            K M+ KL++QL G++W+WNNLNTLCWAIGSISG+M E  E RF V VI+DLL LCEM +G
Sbjct: 480  KYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRG 539

Query: 538  KDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597
            KDNKAV+ASNIMYVVGQYPRFL+AHW FLKTVV KLFEFMHE H GVQDMACDTF+KIVQ
Sbjct: 540  KDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQ 599

Query: 598  KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657
            KC   FV  Q GE+EPF+  ++  L  T  DLEP Q HTFYE+ G +I      +  +  
Sbjct: 600  KCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRL 659

Query: 658  LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717
            +  LM LPN  W  I+ QA ++++ L D   ++   N ++TN +  ++LG  F  Q    
Sbjct: 660  VLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFYPQTCSS 719

Query: 718  FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG 777
            +  ML +Y   S  IS+S+++ G  A+KT  V+ LR++K+E LKL+ T++ KA D   + 
Sbjct: 720  YCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQ 779

Query: 778  ---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEM 822
                           K NVPDAR++EVL+L  TI+   +  +         ++F CTL M
Sbjct: 780  NDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIM 839

Query: 823  ITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETG 882
            I K+F++YPEHR  F  LL  I    F A +       KLV ++I+W+F+H  R++++ G
Sbjct: 840  IVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLG 899

Query: 883  LNLLLEMLKNF--QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCL 940
            LN+LL + KN       F NQFY  Y+++  + I  VLTD+ HK GF    L+L  L  L
Sbjct: 900  LNILLILFKNCHEMGVPFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIRL 959

Query: 941  VESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRND 1000
            V+   ++ PL+D          N   + EY + L   SFPN+T   V  F  GL E   D
Sbjct: 960  VKDNKISVPLYDGIN------PNITILSEYIVGLFVKSFPNITQESVKIFSVGLFELCGD 1013

Query: 1001 LSTFKNHIRDFLVQSKEF----SAQDNKDLYAEE 1030
               FK H+ DF V+  EF      Q+  DL  E 
Sbjct: 1014 DEIFKEHVEDFRVKVYEFGTDEDLQEEIDLKNER 1047


Length = 1053

>gnl|CDD|198170 smart01102, CRM1_C, CRM1 C terminal Back     alignment and domain information
>gnl|CDD|204057 pfam08767, CRM1_C, CRM1 C terminal Back     alignment and domain information
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1061
COG51011053 CRM1 Importin beta-related nuclear transport recep 100.0
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 100.0
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 100.0
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 100.0
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 100.0
KOG2081559 consensus Nuclear transport regulator [Intracellul 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.96
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.89
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 99.87
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.83
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.74
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.62
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.56
COG5656970 SXM1 Importin, protein involved in nuclear import 99.56
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.31
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.85
KOG4541748 consensus Nuclear transport receptor exportin 4 (i 98.58
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.34
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.08
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.07
KOG09151702 consensus Uncharacterized conserved protein [Funct 97.53
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.51
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.5
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.41
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.28
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.22
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 96.93
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.73
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 96.42
PTZ00429746 beta-adaptin; Provisional 96.35
KOG0212 675 consensus Uncharacterized conserved protein [Funct 95.67
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.65
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.35
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.79
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.73
KOG1242569 consensus Protein containing adaptin N-terminal re 94.15
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.79
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 93.62
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 92.69
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.88
KOG1242569 consensus Protein containing adaptin N-terminal re 91.74
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 91.59
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 91.58
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 90.81
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 90.25
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 89.95
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 89.47
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 88.74
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 88.5
PRK09687280 putative lyase; Provisional 87.56
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 86.27
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 85.48
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 85.24
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 84.01
PF08167165 RIX1: rRNA processing/ribosome biogenesis 82.15
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 80.77
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 80.72
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 80.46
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
Probab=100.00  E-value=2.3e-170  Score=1368.14  Aligned_cols=1008  Identities=43%  Similarity=0.730  Sum_probs=947.6

Q ss_pred             hHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhccc
Q 036770            3 AEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRW   82 (1061)
Q Consensus         3 ~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w   82 (1061)
                      ||.||+|+.++|++.++++|..+|.|.+. +++||+++|.+||+.|+||+.+++||..|..++.+|.|+++|+..|.++|
T Consensus         1 MEgIL~fd~dLdiallDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkW   79 (1053)
T COG5101           1 MEGILEFDKDLDIALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKW   79 (1053)
T ss_pred             CcchhhcccccCHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhh
Confidence            89999999999999999999999999665 88999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHH
Q 036770           83 NALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAIL  162 (1061)
Q Consensus        83 ~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL  162 (1061)
                      +-+|.++|.+||+++++.++..++++.....++++.||+..+++.|++++||.+||+||+++++.++.+...|+++|.+|
T Consensus        80 kllp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivL  159 (1053)
T COG5101          80 KLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVL  159 (1053)
T ss_pred             hhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHH
Confidence            99999999999999999999988888878889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHH
Q 036770          163 KLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL  242 (1061)
Q Consensus       163 ~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~  242 (1061)
                      +.|+|||++++.+++++.|++.+|.+|..++++||.+|.++|+.+.+++++.++|..+..|+.|+|+++++++++++++.
T Consensus       160 klLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~  239 (1053)
T COG5101         160 KLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVL  239 (1053)
T ss_pred             HHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -hhCCCccchHHHHHHHHHHhcCcCCcchH----HHHHHHHHHHHHHHH-hhCCCCCChhhhhcCCCcchHHHHHHHHHH
Q 036770          243 -KFFPMPSYRNLTLQCLTEVGALNFGDFYN----VQYVNMYNVFMVQLQ-TILPPTTNIPEAYAHGNSEEQAFIQNLALF  316 (1061)
Q Consensus       243 -~~L~~~~~~~~a~~cL~ei~~~~~~~~~~----~~~~~~f~~~l~~l~-~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l  316 (1061)
                       ++++.|++|.++++||+||++++..|.+.    ..+.-.|+.++.... ...|...++.++|+..+..|+.|++++|.|
T Consensus       240 ~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~f  319 (1053)
T COG5101         240 EHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQF  319 (1053)
T ss_pred             HHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHH
Confidence             78889999999999999999987444332    345556665555544 467778889999998888899999999999


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccC----CCCC
Q 036770          317 FTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMM----GLPM  392 (1061)
Q Consensus       317 ~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~----g~~~  392 (1061)
                      ++++.+.|..++|+.. ..+.+..++.||++++.+++.|+|+.|+|||+.++.++|.+.+..|..+. +|++    |...
T Consensus       320 L~s~~~~~~~lLE~~e-~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem-~Pli~ls~~s~~  397 (1053)
T COG5101         320 LSSLYEVYISLLEARE-MAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEM-SPLIQLSVGSQA  397 (1053)
T ss_pred             HHHHHHHHHHHhcChh-HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-Ccchhccccchh
Confidence            9999999999999864 45667799999999999999999999999999999999999988887654 5643    2211


Q ss_pred             C-CCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcC
Q 036770          393 P-LLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHL  471 (1061)
Q Consensus       393 ~-~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l  471 (1061)
                      + .+|...++    .+.|++.|..++++|+.+++++|.+|+||+++++|+||.+|++.+|+|++.+|++||++|+||||+
T Consensus       398 istnpn~~~~----~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL  473 (1053)
T COG5101         398 ISTNPNQDST----KPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHL  473 (1053)
T ss_pred             ccCCcchhcc----cchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhh
Confidence            0 01333333    388999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHH
Q 036770          472 DHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYV  551 (1061)
Q Consensus       472 ~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~  551 (1061)
                      +..|+..+|.+++..+++|.+|+|++++++|||+|||||+|.++.|++|++.++++|+.||+.++||++|+++||+|||+
T Consensus       474 ~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyv  553 (1053)
T COG5101         474 IVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYV  553 (1053)
T ss_pred             hhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCc
Q 036770          552 VGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEP  631 (1061)
Q Consensus       552 ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~  631 (1061)
                      +||||||+++||.||++|++|||+|||+.|+||++|||++|.+|+++|+.||+.+++||.+||+..|+++++.++++|.+
T Consensus       554 vGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~p  633 (1053)
T COG5101         554 VGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEP  633 (1053)
T ss_pred             eccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhH
Q 036770          632 HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFL  711 (1061)
Q Consensus       632 ~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~  711 (1061)
                      .+.+.+|||+|.+|+.+|....+.+++-.+|+.+++.|..+..++..++..+.|+..++...+.+++++..|.++|..|.
T Consensus       634 qQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~fy  713 (1053)
T COG5101         634 QQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFY  713 (1053)
T ss_pred             HHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999999999999998888899999999999999999998888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhh---------------
Q 036770          712 SQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQI---------------  776 (1061)
Q Consensus       712 ~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l---------------  776 (1061)
                      |+....|-.++..|...+..|...++..|-.+++.|.+|.+|++|++|++++.+|+++..++..+               
T Consensus       714 Pq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~eaVl~D  793 (1053)
T COG5101         714 PQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLCEAVLFD  793 (1053)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988775433               


Q ss_pred             hhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCC
Q 036770          777 GKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLS  856 (1061)
Q Consensus       777 ~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~  856 (1061)
                      +.+++|++|++++|+|++++|.+.++.+....+.++..+|.||+.|+.+|+.+|||||.+||.|+..++..||.++++.|
T Consensus       794 Y~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~mi~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p  873 (1053)
T COG5101         794 YKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIMIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFP  873 (1053)
T ss_pred             HhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence            22388999999999999999999998888888899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHH
Q 036770          857 SQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA--SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVL  934 (1061)
Q Consensus       857 ~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L  934 (1061)
                      ++.|+.++++++|+++|-.|++++.||+++..+++++..  ..++++||++||+.++..++.++||+.|++||++|+.+|
T Consensus       874 ~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Lll  953 (1053)
T COG5101         874 QPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLL  953 (1053)
T ss_pred             cHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHH
Confidence            999999999999999999999999999999999999865  578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 036770          935 QHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQ 1014 (1061)
Q Consensus       935 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~ 1014 (1061)
                      +.++++++.|+|++|+|+.      |..|..++++|+.+++.++|||++++++..|..+|+..++|..-||.|++||.++
T Consensus       954 a~li~lv~dnkisVPlyd~------~~~n~~~lseyi~~l~~~sfp~it~e~v~~f~~~l~~~~~d~~ifk~~~~df~vk 1027 (1053)
T COG5101         954 AFLIRLVKDNKISVPLYDG------INPNITILSEYIVGLFVKSFPNITQESVKIFSVGLFELCGDDEIFKEHVEDFRVK 1027 (1053)
T ss_pred             HHHHHHHhccccccccccC------CCCchhhHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHhCcHHHHHHHHHHHhhh
Confidence            9999999999999999995      4588999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCCh
Q 036770         1015 SKEFSAQDNK 1024 (1061)
Q Consensus      1015 ~k~~~~~~~~ 1024 (1061)
                      .+|||| |++
T Consensus      1028 v~e~g~-d~~ 1036 (1053)
T COG5101        1028 VYEFGT-DED 1036 (1053)
T ss_pred             eeeeCC-Ccc
Confidence            999977 887



>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1061
3gjx_A1073 Crystal Structure Of The Nuclear Export Complex Crm 0.0
3gb8_A1071 Crystal Structure Of Crm1SNURPORTIN-1 Complex Lengt 0.0
4fgv_A1086 Crystal Structure Of Free Crm1 (crystal Form 1) Len 0.0
4gpt_C1060 Crystal Structure Of Kpt251 In Complex With Crm1-ra 0.0
4hb4_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 0.0
4hb2_C1023 Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 0.0
4hat_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 0.0
3m1i_C1049 Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex 0.0
4hax_C1023 Crystal Structure Of Crm1 Inhibitor Ratjadone A In 0.0
4haw_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 0.0
4hay_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 0.0
4hb3_C1023 Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked 0.0
4haz_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 0.0
4hb0_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 0.0
3vyc_A1033 Crystal Structure Of Unliganded Saccharomyces Cerev 0.0
1w9c_A321 Proteolytic Fragment Of Crm1 Spanning Six C-Termina 5e-75
2l1l_B127 Nmr Solution Structure Of The Phi0 Pki Nes Peptide 6e-54
3a6p_A 1204 Crystal Structure Of Exportin-5:rangtp:pre-Mirna Co 1e-12
2x1g_F971 Crystal Structure Of Importin13 - Mago-Y14 Complex 2e-07
2h4m_A865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 1e-06
2qmr_A890 Karyopherin Beta2TRANSPORTIN Length = 890 1e-06
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 1e-06
1qbk_B890 Structure Of The Karyopherin Beta2-ran Gppnhp Nucle 1e-05
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1- Snurportin1-Rangtp Length = 1073 Back     alignment and structure

Iteration: 1

Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/1083 (48%), Positives = 719/1083 (66%), Gaps = 47/1083 (4%) Query: 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS 61 AA +L D SQ +D+ LLD V Y G ++ A ++L L+ +PD W +V IL+ S Sbjct: 14 AARQLLDFSQKLDINLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 72 Query: 62 KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKL 121 +N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ KL Sbjct: 73 QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKL 132 Query: 122 NIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQK 181 N+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ K Sbjct: 133 NMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK 192 Query: 182 IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241 K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ TL Sbjct: 193 AKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTL 252 Query: 242 L-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300 + KF +P +RN++L+CLTE+ ++ Y Q+ ++ + M+QL+ +LP TNI AY+ Sbjct: 253 IYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYS 311 Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360 +G +EQ FIQNL+LF +F K H ++LE AL+ L Y++ +S V+ETE+FK+C Sbjct: 312 NGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC 371 Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQ---LLQRRQLYAVPL 417 L+YWN EL+ E+P T+ PLL G+Q + RRQLY L Sbjct: 372 LEYWNHLAAELYR-----ESPFSTS-----ASPLLS------GSQHFDIPPRRQLYLTVL 415 Query: 418 SKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 477 SK+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE Sbjct: 416 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTE 475 Query: 478 XXXXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKG 537 G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +G Sbjct: 476 IIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRG 535 Query: 538 KDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 KDNKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI Q Sbjct: 536 KDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 Query: 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657 KC+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E Sbjct: 596 KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 655 Query: 658 LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717 +++ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I Sbjct: 656 IEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 715 Query: 718 FLDMLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG 777 +LDMLNVYK SE +K ++ +R+VKRETLKLI ++ ++ D + Sbjct: 716 YLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVA 775 Query: 778 ---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEM 822 ++NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL M Sbjct: 776 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNM 835 Query: 823 ITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETG 882 I K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TG Sbjct: 836 INKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTG 895 Query: 883 LNLLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLV 941 L +L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LV Sbjct: 896 LQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV 955 Query: 942 ESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDL 1001 E G ++ PL + NN MF+++Y LL ++FP++ A+V FV GL D+ Sbjct: 956 EEGKISTPLNPGNPV-----NNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDI 1010 Query: 1002 STFKNHIRDFLVQSKEFSAQDNKDLY----XXXXXXXXXXXXXXMLSIPGLIAPNEIQDE 1057 FK H+RDFLVQ KEF+ +D DL+ +S+PG++ P+EI +E Sbjct: 1011 PAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEE 1070 Query: 1058 MVD 1060 M D Sbjct: 1071 MCD 1073
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex Length = 1071 Back     alignment and structure
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1) Length = 1086 Back     alignment and structure
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 1060 Back     alignment and structure
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(537dltvk541/glceq)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 1049 Back     alignment and structure
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex With Crm1(k579a)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548a)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548e,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In Excess Crm1 Inhibitor Leptomycin B Length = 1023 Back     alignment and structure
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae Crm1 (Xpo1p) Length = 1033 Back     alignment and structure
>pdb|1W9C|A Chain A, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat Repeats Length = 321 Back     alignment and structure
>pdb|2L1L|B Chain B, Nmr Solution Structure Of The Phi0 Pki Nes Peptide In Complex With Crm1-Rangtp Length = 127 Back     alignment and structure
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex Length = 1204 Back     alignment and structure
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971 Back     alignment and structure
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1061
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 0.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 0.0
2x19_B963 Importin-13; nuclear transport, protein transport; 1e-147
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 1e-139
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 1e-131
2x1g_F971 Cadmus; transport protein, developmental protein, 1e-116
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 1e-112
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-15
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-13
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 3e-09
1qgr_A876 Protein (importin beta subunit); transport recepto 6e-05
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
 Score =  968 bits (2504), Expect = 0.0
 Identities = 532/1080 (49%), Positives = 729/1080 (67%), Gaps = 41/1080 (3%)

Query: 2    AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS 61
            AA +L D SQ +D+ LLD  V   Y  G   ++  A ++L  L+ +PD W +V  IL+ S
Sbjct: 14   AARQLLDFSQKLDINLLDNVVNCLY-HGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 72

Query: 62   KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKL 121
            +N+NTK++ LQ+LE VIK RW  LP  Q +G+K Y+  +I++ SS+     +E++Y+ KL
Sbjct: 73   QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKL 132

Query: 122  NIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQK 181
            N+ILVQILK EWP  W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ K
Sbjct: 133  NMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK 192

Query: 182  IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241
             K LK S+ +EF  I +LC +V+  SQ   L+ ATL TL  FL+WIPLGYIFE+ L+ TL
Sbjct: 193  AKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTL 252

Query: 242  L-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
            + KF  +P +RN++L+CLTE+  ++    Y  Q+  ++ + M+QL+ +LP  TNI  AY+
Sbjct: 253  IYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYS 311

Query: 301  HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
            +G  +EQ FIQNL+LF  +F K H ++LE       AL+  L Y++ +S V+ETE+FK+C
Sbjct: 312  NGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC 371

Query: 361  LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
            L+YWN    EL+                       P +       +  RRQLY   LSK+
Sbjct: 372  LEYWNHLAAELYR-------------ESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKV 418

Query: 421  RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
            R+LM+ RMAKPEEVL+VE++ G +VRE MKD D +  YK MRETL+YL+HLD+ DTE  M
Sbjct: 419  RLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIM 478

Query: 481  LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
             KKL  Q++G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE  +GKDN
Sbjct: 479  TKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN 538

Query: 541  KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
            KA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC+
Sbjct: 539  KAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598

Query: 601  RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
            R FV VQVGE  PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D   +E  +++
Sbjct: 599  RHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEK 658

Query: 661  LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
             MLLPNQ W  II QA ++VD LKD + ++ + +IL+TN     A+G  F+ Q+  I+LD
Sbjct: 659  YMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLD 718

Query: 721  MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG--- 777
            MLNVYK  SE IS++I + G   +K   ++ +R+VKRETLKLI  ++ ++ D   +    
Sbjct: 719  MLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENF 778

Query: 778  ------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
                        ++NVP ARE EVLS  A I+NK  G +  ++P+IF+A+F+CTL MI K
Sbjct: 779  VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK 838

Query: 826  NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
            +FE+YPEHR  FF LL+A+ +HCFPA + +   Q KLV+DSIIWAF+HT RN+A+TGL +
Sbjct: 839  DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQI 898

Query: 886  LLEMLKNFQASE-FCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG 944
            L  +L+N    E     FY+TYF  I Q IF+V+TDT H  G  +H  +L ++F LVE G
Sbjct: 899  LFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEG 958

Query: 945  LLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTF 1004
             ++ PL      P    NN MF+++Y   LL ++FP++  A+V  FV GL     D+  F
Sbjct: 959  KISTPLN-----PGNPVNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 1013

Query: 1005 KNHIRDFLVQSKEFSAQDNKDLYAEE----AAAQRERERQRMLSIPGLIAPNEIQDEMVD 1060
            K H+RDFLVQ KEF+ +D  DL+ EE        +E + +  +S+PG++ P+EI +EM D
Sbjct: 1014 KEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1073


>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Length = 321 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1061
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 100.0
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 99.97
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.89
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.47
1qgr_A876 Protein (importin beta subunit); transport recepto 99.34
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.32
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.19
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.77
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.74
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.6
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.67
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.61
2x1g_F971 Cadmus; transport protein, developmental protein, 97.61
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.59
2x19_B963 Importin-13; nuclear transport, protein transport; 97.56
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.54
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.5
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.35
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.2
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.15
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.12
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.02
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.92
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.83
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 96.67
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.66
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.62
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.6
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.6
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 96.42
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.78
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 95.36
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 95.26
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 95.17
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 95.13
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 94.98
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 94.9
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 94.81
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 94.8
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 94.8
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 94.27
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 93.61
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 93.32
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 92.95
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 92.73
2db0_A253 253AA long hypothetical protein; heat repeats, hel 92.43
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 91.95
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 90.92
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 90.09
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 88.51
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 86.17
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 84.9
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 82.91
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 81.87
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
Probab=100.00  E-value=2.6e-167  Score=1566.31  Aligned_cols=1038  Identities=51%  Similarity=0.894  Sum_probs=952.7

Q ss_pred             hHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhccc
Q 036770            3 AEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRW   82 (1061)
Q Consensus         3 ~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w   82 (1061)
                      |+.||||++++|++.+++++.++|+| ++++|++|+++|++||++|++|..|..+|..++++++||||+++|+++|+++|
T Consensus        15 ~~~~ld~~~~~Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W   93 (1073)
T 3gjx_A           15 ARQLLDFSQKLDINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW   93 (1073)
T ss_dssp             CCCCCSSSCCCSHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred             HHHhhCcCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence            88999999999999999999999999 56699999999999999999999999999888899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHH
Q 036770           83 NALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAIL  162 (1061)
Q Consensus        83 ~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL  162 (1061)
                      +.+|++++..||+++++++.+.+++++..+.++.+++|+|+++|.|++++||+.||+|++++++.+++++..++++|++|
T Consensus        94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL  173 (1073)
T 3gjx_A           94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVIL  173 (1073)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999999999999876665434445677899999999999999999999999999999988888999999999


Q ss_pred             HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHH-
Q 036770          163 KLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL-  241 (1061)
Q Consensus       163 ~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l-  241 (1061)
                      +.|+|||+++++.++++.|++++++.|+..++.|+++|..+|++..+++++..+|+|+++|++|+|+++++++++++++ 
T Consensus       174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~  253 (1073)
T 3gjx_A          174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLI  253 (1073)
T ss_dssp             HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred             HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHH
Confidence            9999999987667788999999999999999999999999999888899999999999999999999999999999988 


Q ss_pred             HhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHH
Q 036770          242 LKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFF  321 (1061)
Q Consensus       242 ~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~  321 (1061)
                      +.+|+++++|++|++||++|++++.+ .|++.+..+|..++..+..++|...++.++|...+++|++|++++|+++++++
T Consensus       254 ~~~L~~~~~r~aA~dcL~eIv~k~~~-~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~  332 (1073)
T 3gjx_A          254 YKFLNVPMFRNVSLKCLTEIAGVSVS-QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFL  332 (1073)
T ss_dssp             HHTSSSHHHHHHHHHHHHHHHHSCSG-GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhcCChHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence            69999999999999999999998643 57888999999999999999999889999998778889999999999999999


Q ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhh
Q 036770          322 KFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDG  401 (1061)
Q Consensus       322 ~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~  401 (1061)
                      ++|..++++.|+..+.+..++++|+.|+.++|.|++++||+||+.+.+++|++.... . + ..|+++      .+.+.+
T Consensus       333 e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~-~-~-~~~~~~------~~~~~~  403 (1073)
T 3gjx_A          333 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS-T-S-ASPLLS------GSQHFD  403 (1073)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSC-C-C-CSSCTT------SSCCSC
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccc-c-c-cccccc------cccccc
Confidence            999999998776677788899999999999999999999999999999999875210 0 0 012110      011234


Q ss_pred             hhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHH
Q 036770          402 IGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQML  481 (1061)
Q Consensus       402 ~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~  481 (1061)
                      |    +.++..|++++++|+.++++||+||+|+++.|+|+||.+|++++|++++.+|+.||++|.++++++++++..+|+
T Consensus       404 ~----~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~  479 (1073)
T 3gjx_A          404 I----PPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMT  479 (1073)
T ss_dssp             S----CHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             c----hhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4    678899999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH
Q 036770          482 KKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA  561 (1061)
Q Consensus       482 ~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~  561 (1061)
                      ++|.++++++.|+|+.+|++|||+|+|||++.++.|+++++++|+.|+++|++++|+++|+++++++||++|||++|++.
T Consensus       480 ~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~  559 (1073)
T 3gjx_A          480 KKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA  559 (1073)
T ss_dssp             HHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh
Confidence            99998887778999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHH
Q 036770          562 HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESV  641 (1061)
Q Consensus       562 ~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eai  641 (1061)
                      ||+||++++++|++||++++++|++|||+||.+||++|+++|+.+++|+..||+++|++.+..+...+++++...+|||+
T Consensus       560 h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav  639 (1073)
T 3gjx_A          560 HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAV  639 (1073)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHH
Q 036770          642 GHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDM  721 (1061)
Q Consensus       642 g~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~l  721 (1061)
                      |++++++|++..+..+++.||.|+++.|++++++++++++.+.|++.++++.++++|+.++|+++|++|.|+++.+|+++
T Consensus       640 ~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~  719 (1073)
T 3gjx_A          640 GYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDM  719 (1073)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHH
Confidence            99999999988788999999999999999999988888888899998999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhh---------------hcCCCCcch
Q 036770          722 LNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG---------------KQNVPDARE  786 (1061)
Q Consensus       722 l~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~---------------~~~~~~~r~  786 (1061)
                      +++|+.+++.|...++..|..+.+++.+|.+|++|++|++++++|+++.++.+.+.               +.+.|.+|+
T Consensus       720 l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~  799 (1073)
T 3gjx_A          720 LNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAARE  799 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCccccc
Confidence            99999999999999999999999999999999999999999999999887754332               238899999


Q ss_pred             HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHH
Q 036770          787 SEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDS  866 (1061)
Q Consensus       787 ~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~  866 (1061)
                      |+||++++++|+++|..+.+.++.|++.+|+||++||++|+++|||||.+||+|+++++++||..|+++|+++|+.+++|
T Consensus       800 ~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~  879 (1073)
T 3gjx_A          800 PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDS  879 (1073)
T ss_dssp             THHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCC
Q 036770          867 IIWAFRHTERNIAETGLNLLLEMLKNFQA-SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL  945 (1061)
Q Consensus       867 i~~~~~~~~~~i~~~~l~~l~~l~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~  945 (1061)
                      ++||++|++|+++++||+++.++++++.+ ++++++||++||..++.++|.|+||+.|++||+.|+.+|++|+.+++.|+
T Consensus       880 i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~  959 (1073)
T 3gjx_A          880 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGK  959 (1073)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999875 46899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhcccCCChh
Q 036770          946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKD 1025 (1061)
Q Consensus       946 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~~~~~~ 1025 (1061)
                      |..|++... +    ..|++++++|+.++|.++||+++++|+..|++++|+.++|..+||+++|||++++|||+|+|++|
T Consensus       960 i~~~l~~~~-~----~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~~~~d~~~f~~~lrDFli~~ke~~~~~~~~ 1034 (1073)
T 3gjx_A          960 ISTPLNPGN-P----VNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSD 1034 (1073)
T ss_dssp             CSCSSSCTT-T----TCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTSCCTTTCCT
T ss_pred             ccccccccC-C----CccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            999998421 1    25899999999999999999999999999999999999999999999999999999999988889


Q ss_pred             hhHHHHHHH----HHHHHHhhccCCCcCCCCCCChhhhc
Q 036770         1026 LYAEEAAAQ----RERERQRMLSIPGLIAPNEIQDEMVD 1060 (1061)
Q Consensus      1026 l~~~e~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~ 1060 (1061)
                      ||+||||++    ++++|+++.+||||++|+|++|||.|
T Consensus      1035 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 1073 (1073)
T 3gjx_A         1035 LFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1073 (1073)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHSCC----------------
T ss_pred             HhHHHHHHHHHHHHHHHHhHHhcCCCCCCccccChhhcC
Confidence            999999999    66777888999999999999998865



>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1061
d1w9ca_321 a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho 1e-116
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 1e-21
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 3e-17
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 2e-11
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]
 Score =  359 bits (923), Expect = e-116
 Identities = 146/325 (44%), Positives = 206/325 (63%), Gaps = 21/325 (6%)

Query: 711  LSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKA 770
            + Q+  I+LDMLNVYK  SE IS++I + G   +K   ++ +R+VKRETLKLI  ++ ++
Sbjct: 1    VIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRS 60

Query: 771  EDQPQIG---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAI 815
             D   +                ++NVP ARE EVLS  A I+NK  G +  ++P+IF+A+
Sbjct: 61   NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAV 120

Query: 816  FQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTE 875
            F+CTL MI K+FE+YPEHR  FF LL+A+ +HCFPA + +   Q KLV+DSIIWAF+HT 
Sbjct: 121  FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTM 180

Query: 876  RNIAETGLNLLLEMLKNF-QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVL 934
            RN+A+TGL +L  +L+N  Q       FY+TYF  I Q IF+V+TDT H  G  +H  +L
Sbjct: 181  RNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASIL 240

Query: 935  QHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGL 994
             ++F LVE G ++  L      P    NN +F++EY   LL ++FP++  A+V  FV GL
Sbjct: 241  AYMFNLVEEGKISTSLN-----PGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGL 295

Query: 995  LESRNDLSTFKNHIRDFLVQSKEFS 1019
                 D+  FK H+RDFLVQ KEF+
Sbjct: 296  FSLNQDIPAFKEHLRDFLVQIKEFA 320


>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1061
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.96
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.95
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.01
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.94
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.63
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.46
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.34
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.33
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.25
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.62
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.28
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.46
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.1
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.97
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 95.74
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.25
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 93.45
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 90.47
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 88.62
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 88.55
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 87.6
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00  E-value=4.9e-54  Score=462.74  Aligned_cols=303  Identities=48%  Similarity=0.853  Sum_probs=286.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhh--------------
Q 036770          713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK--------------  778 (1061)
Q Consensus       713 ~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~--------------  778 (1061)
                      |++.||.+++++|+.+|+.|...++..|+.+++.|.+|.||++||+|++++++|+++.++++.+.+              
T Consensus         3 ql~~i~~dml~~Y~~~S~~I~~~i~~~G~~~~k~~~vr~lr~iKkeiLkLi~t~i~~~~d~~~v~~~~i~pl~~~vL~DY   82 (321)
T d1w9ca_           3 QLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDY   82 (321)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCChHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999988554422              


Q ss_pred             -cCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCCh
Q 036770          779 -QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSS  857 (1061)
Q Consensus       779 -~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~  857 (1061)
                       .+.|+.|+|++|++++++++|+++.+.+.++.|++.||+||++||++|+++|||||.+||+|+++++++||+.++.+|+
T Consensus        83 ~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~  162 (321)
T d1w9ca_          83 QRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP  162 (321)
T ss_dssp             HTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCH
T ss_pred             HhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCH
Confidence             3889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHH
Q 036770          858 QQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA-SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQH  936 (1061)
Q Consensus       858 ~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~  936 (1061)
                      ++++.+++|++||++|++|++++.||+.+.++++++.. +..+++||++||.+++.++|.|+||++|++||+.|+.+|..
T Consensus       163 ~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~  242 (321)
T d1w9ca_         163 TQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAY  242 (321)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998865 45789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhh
Q 036770          937 LFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSK 1016 (1061)
Q Consensus       937 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k 1016 (1061)
                      |+.+++.+.|+.|+...     .+..|..++++|+.++|.++||+++++|+..|+++|++.++|..+||+++|||++++|
T Consensus       243 Lf~ive~~~i~~~l~~~-----~~~~n~~~l~e~l~~lL~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFLI~~k  317 (321)
T d1w9ca_         243 MFNLVEEGKISTSLNPG-----NPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK  317 (321)
T ss_dssp             HHHHHHTTCCCSCSCSS-----SCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccccccccccc-----cccchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhh
Confidence            99999999999998653     3358899999999999999999999999999999999999999999999999999999


Q ss_pred             hccc
Q 036770         1017 EFSA 1020 (1061)
Q Consensus      1017 ~~~~ 1020 (1061)
                      ||+|
T Consensus       318 ef~g  321 (321)
T d1w9ca_         318 EFAG  321 (321)
T ss_dssp             TTTC
T ss_pred             hcCC
Confidence            9987



>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure