Citrus Sinensis ID: 036770
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1061 | 2.2.26 [Sep-21-2011] | |||||||
| Q6P5F9 | 1071 | Exportin-1 OS=Mus musculu | yes | no | 0.976 | 0.967 | 0.499 | 0.0 | |
| Q80U96 | 1071 | Exportin-1 OS=Rattus norv | yes | no | 0.976 | 0.967 | 0.498 | 0.0 | |
| O14980 | 1071 | Exportin-1 OS=Homo sapien | yes | no | 0.976 | 0.967 | 0.496 | 0.0 | |
| P14068 | 1078 | Exportin-1 OS=Schizosacch | yes | no | 0.981 | 0.965 | 0.478 | 0.0 | |
| Q54EV7 | 1057 | Exportin-1 OS=Dictyosteli | yes | no | 0.967 | 0.971 | 0.466 | 0.0 | |
| Q9TVM2 | 1063 | Exportin-1 OS=Drosophila | yes | no | 0.971 | 0.969 | 0.460 | 0.0 | |
| P30822 | 1084 | Exportin-1 OS=Saccharomyc | yes | no | 0.988 | 0.967 | 0.410 | 0.0 | |
| Q54PQ8 | 1135 | Exportin-5 OS=Dictyosteli | no | no | 0.191 | 0.178 | 0.254 | 1e-14 | |
| Q9HAV4 | 1204 | Exportin-5 OS=Homo sapien | no | no | 0.152 | 0.134 | 0.277 | 2e-11 | |
| Q924C1 | 1204 | Exportin-5 OS=Mus musculu | no | no | 0.161 | 0.142 | 0.276 | 1e-09 |
| >sp|Q6P5F9|XPO1_MOUSE Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1085 bits (2805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1083 (49%), Positives = 742/1083 (68%), Gaps = 47/1083 (4%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS 61
AA +L D SQ +D+ LLD V Y G ++ A ++L L+ +PD W +V IL+ S
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 70
Query: 62 KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKL 121
+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ KL
Sbjct: 71 QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKL 130
Query: 122 NIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQK 181
N+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ K
Sbjct: 131 NMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK 190
Query: 182 IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241
K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ TL
Sbjct: 191 AKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTL 250
Query: 242 L-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
+ KF +P +RN++L+CLTE+ ++ Y Q+ ++ + M+QL+ +LP TNI AY+
Sbjct: 251 IYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYS 309
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
+G +EQ FIQNL+LF +F K H ++LE AL+ L Y++ +S V+ETE+FK+C
Sbjct: 310 NGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC 369
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQ---LLQRRQLYAVPL 417
L+YWN EL+ E+P T+ PLL G+Q + RRQLY L
Sbjct: 370 LEYWNHLAAELYR-----ESPFSTS-----ASPLLS------GSQHFDIPPRRQLYLTVL 413
Query: 418 SKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 477
SK+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 414 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTE 473
Query: 478 KQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKG 537
M KKL Q++G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +G
Sbjct: 474 IIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRG 533
Query: 538 KDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597
KDNKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI Q
Sbjct: 534 KDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 593
Query: 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657
KC+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E
Sbjct: 594 KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 653
Query: 658 LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717
+++ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I
Sbjct: 654 IEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 713
Query: 718 FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG 777
+LDMLNVYK SE IS++I + G +K ++ +R+VKRETLKLI ++ ++ D +
Sbjct: 714 YLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVA 773
Query: 778 ---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEM 822
++NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL M
Sbjct: 774 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNM 833
Query: 823 ITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETG 882
I K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TG
Sbjct: 834 INKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTG 893
Query: 883 LNLLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLV 941
L +L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LV
Sbjct: 894 LQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV 953
Query: 942 ESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDL 1001
E G ++ PL + NN MF+++Y LL ++FP++ A+V FV GL D+
Sbjct: 954 EEGKISTPLNPGNPV-----NNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDI 1008
Query: 1002 STFKNHIRDFLVQSKEFSAQDNKDLYAEE---AAAQRERERQRM-LSIPGLIAPNEIQDE 1057
FK H+RDFLVQ KEF+ +D DL+ EE A Q + E+ ++ +S+PG++ P+EI +E
Sbjct: 1009 PAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEE 1068
Query: 1058 MVD 1060
M D
Sbjct: 1069 MCD 1071
|
Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap. Mus musculus (taxid: 10090) |
| >sp|Q80U96|XPO1_RAT Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1084 bits (2804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1083 (49%), Positives = 743/1083 (68%), Gaps = 47/1083 (4%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS 61
AA +L D SQ +D+ LLD V Y G ++ A ++L L+ +PD W +V IL+ S
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 70
Query: 62 KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKL 121
+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ KL
Sbjct: 71 QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKL 130
Query: 122 NIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQK 181
N+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ K
Sbjct: 131 NMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK 190
Query: 182 IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241
K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ TL
Sbjct: 191 AKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTL 250
Query: 242 L-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
+ KF +P +RN++L+CLTE+ ++ Y Q+ ++ + M+QL+ +LP TNI AY+
Sbjct: 251 IYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYS 309
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
+G +EQ FIQNL+LF +F K H ++LE AL+ L Y++ +S V+ETE+FK+C
Sbjct: 310 NGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC 369
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQ---LLQRRQLYAVPL 417
L+YWN EL+ E+P T+ PLL G+Q + RRQLY L
Sbjct: 370 LEYWNHLAAELYR-----ESPFSTS-----ASPLLS------GSQHFDIPPRRQLYLTVL 413
Query: 418 SKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 477
SK+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 414 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTE 473
Query: 478 KQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKG 537
M KKL Q++G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +G
Sbjct: 474 IIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRG 533
Query: 538 KDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597
KDNKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI Q
Sbjct: 534 KDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 593
Query: 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657
KC+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E
Sbjct: 594 KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 653
Query: 658 LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717
+++ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I
Sbjct: 654 IEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 713
Query: 718 FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG 777
+LDMLNVYK SE IS++I + G +K ++ +R+VKRETLKLI ++ ++ D +
Sbjct: 714 YLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVA 773
Query: 778 ---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEM 822
++NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL M
Sbjct: 774 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNM 833
Query: 823 ITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETG 882
I K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TG
Sbjct: 834 INKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTG 893
Query: 883 LNLLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLV 941
L +L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LV
Sbjct: 894 LQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV 953
Query: 942 ESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDL 1001
E G ++ PL + + +N MF+++Y LL ++FP++ A+V FV GL D+
Sbjct: 954 EEGKISTPLNPGSPV-----SNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDI 1008
Query: 1002 STFKNHIRDFLVQSKEFSAQDNKDLYAEE---AAAQRERERQRM-LSIPGLIAPNEIQDE 1057
FK H+RDFLVQ KEF+ +D DL+ EE A Q + E+ ++ +S+PG++ P+EI +E
Sbjct: 1009 PAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEE 1068
Query: 1058 MVD 1060
M D
Sbjct: 1069 MCD 1071
|
Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap. Rattus norvegicus (taxid: 10116) |
| >sp|O14980|XPO1_HUMAN Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1083 (49%), Positives = 739/1083 (68%), Gaps = 47/1083 (4%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS 61
AA +L D SQ +D+ LLD V Y G ++ A ++L L+ +PD W +V IL+ S
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 70
Query: 62 KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKL 121
+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ KL
Sbjct: 71 QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKL 130
Query: 122 NIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQK 181
N+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ K
Sbjct: 131 NMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK 190
Query: 182 IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241
K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ TL
Sbjct: 191 SKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTL 250
Query: 242 L-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
+ KF +P +RN++L+CLTE+ ++ Y Q+V ++ + M+QL+ +LP TNI AY+
Sbjct: 251 IYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFVTLFTLTMMQLKQMLPLNTNIRLAYS 309
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
+G +EQ FIQNL+LF +F K H +++E L+ L Y++ +S V+ETE+FK+C
Sbjct: 310 NGKDDEQNFIQNLSLFLCTFLKEHDQLIEKRLNLRETLMEALHYMLLVSEVEETEIFKIC 369
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQ---RRQLYAVPL 417
L+YWN EL+ E+P T+ PLL G+Q RRQLY L
Sbjct: 370 LEYWNHLAAELYR-----ESPFSTS-----ASPLLS------GSQHFDVPPRRQLYLPML 413
Query: 418 SKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 477
K+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 414 FKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTE 473
Query: 478 KQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKG 537
+ M +KL Q++G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +G
Sbjct: 474 RIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRG 533
Query: 538 KDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597
KDNKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI Q
Sbjct: 534 KDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 593
Query: 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657
KC+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E
Sbjct: 594 KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 653
Query: 658 LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717
+++ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I
Sbjct: 654 IEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 713
Query: 718 FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG 777
+LDMLNVYK SE IS++I + G +K ++ +R+VKRETLKLI ++ ++ D +
Sbjct: 714 YLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVA 773
Query: 778 ---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEM 822
++NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL M
Sbjct: 774 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNM 833
Query: 823 ITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETG 882
I K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TG
Sbjct: 834 INKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTG 893
Query: 883 LNLLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLV 941
L +L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LV
Sbjct: 894 LQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLV 953
Query: 942 ESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDL 1001
E G ++ L + NN +F++EY LL ++FP++ A+V FV GL D+
Sbjct: 954 EEGKISTSLNPGNPV-----NNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDI 1008
Query: 1002 STFKNHIRDFLVQSKEFSAQDNKDLYAEE---AAAQRERER-QRMLSIPGLIAPNEIQDE 1057
FK H+RDFLVQ KEF+ +D DL+ EE A Q + E+ +R +S+PG+ P+EI +E
Sbjct: 1009 PAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEE 1068
Query: 1058 MVD 1060
M D
Sbjct: 1069 MCD 1071
|
Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase RAN in its active GTP-bound form (Ran-GTP). Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of an nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from the export receptor. The directionality of nuclear export is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in U3 snoRNA transport from Cajal bodies to nucleoli. Binds to late precursor U3 snoRNA bearing a TMG cap. Several viruses, among them HIV-1, HTLV-1 and influenza A use it to export their unspliced or incompletely spliced RNAs out of the nucleus. Interacts with, and mediates the nuclear export of HIV-1 Rev and HTLV-1 Rex proteins. Involved in HTLV-1 Rex multimerization. Homo sapiens (taxid: 9606) |
| >sp|P14068|XPO1_SCHPO Exportin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=xpo1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1019 bits (2636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/1073 (47%), Positives = 725/1073 (67%), Gaps = 32/1073 (2%)
Query: 4 EKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSK 62
E + + +DVALLD V FY G G+ E+ A Q+L Q +PD W Q IL+ S+
Sbjct: 2 EGILAFDRELDVALLDRVVQTFYQGVGA--EQQQAQQVLTQFQAHPDAWSQAYSILEKSE 59
Query: 63 NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLN 122
TK+ AL VL+ +I RW LP EQR G++NYI V+++ SS+E ++++ ++NKL+
Sbjct: 60 YPQTKYIALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQKTFLNKLD 119
Query: 123 IILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKI 182
+ LVQILK EWP W +FIP++V A+KT+ ++CEN M +L+LLSEE+FD+S +MTQ K
Sbjct: 120 LTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLLSEEIFDYSAEQMTQLKT 179
Query: 183 KELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL 242
K LK + EF I +LC +L +Q+ LI+ATL TL FL+WIPLGYIFE+ ++E +
Sbjct: 180 KNLKNQMCGEFAEIFQLCSQILERAQKPSLIKATLGTLLRFLNWIPLGYIFETNIVELIT 239
Query: 243 -KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAH 301
+F +P +RN+T++CLTE+ +L YN ++V M+N+ M + ++LP T+ EAY
Sbjct: 240 NRFLNVPDFRNVTIECLTEIASLTSQPQYNDKFVTMFNLVMTSVNSMLPLQTDFREAYEE 299
Query: 302 GNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCL 361
++ EQ FIQNLALF +FF H+R LE+ EN LL YL+NIS ++E E+FK+CL
Sbjct: 300 SSTNEQDFIQNLALFLCAFFSSHLRPLENP-ENQEVLLNAHSYLLNISRINEREIFKICL 358
Query: 362 DYWNSFVLELFDAHNNLENPAVTAN-MMGLPMPL-LPSVVDGIGAQLLQRRQLYAVPLSK 419
+YW+ V +L++ + P N ++ L P L S + A L R+ +Y LS
Sbjct: 359 EYWSKLVAQLYEEMQQI--PMSEMNPLLNLSSPTSLISSNPNMLANLPLRKHIYKDILST 416
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQ 479
LR++MI M KPEEVLIVE++ G IVRE +K+ D + YK MRE L+YL+HLD DTE
Sbjct: 417 LRLVMIENMVKPEEVLIVENDEGEIVREFVKETDTITLYKSMREVLVYLTHLDVVDTEIV 476
Query: 480 MLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
M +KL++ + G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCEM +GKD
Sbjct: 477 MTEKLARIVVGTEWSWQNLNTLCWAIGSISGAMNEEMEKRFLVNVIKDLLGLCEMKRGKD 536
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKAV+ASNIMYVVGQYPRFL+AHWKFLKTVVNKLFEFMHE H GVQDMACDTF+KI QKC
Sbjct: 537 NKAVVASNIMYVVGQYPRFLKAHWKFLKTVVNKLFEFMHEYHEGVQDMACDTFIKIAQKC 596
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
+R FV Q+GE EPF++E++ LA T DL P Q HTFYE+ G+MI A+ +E +
Sbjct: 597 RRHFVAQQLGETEPFINEIIRNLAKTTEDLTPQQTHTFYEACGYMISAQPQKHLQERLIF 656
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
LM LPNQ W I+AQA Q+ L D ++ + N+L+TN + +++G+ F QI+ ++
Sbjct: 657 DLMALPNQAWENIVAQAAQNAQVLGDPQTVKILANVLKTNVAACTSIGSGFYPQIAKNYV 716
Query: 720 DMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK- 778
DML +YK S LIS +++ G A+KT +V+ LR++K+E LKL++ ++ +AED +G
Sbjct: 717 DMLGLYKAVSGLISEVVAAQGNIATKTPHVRGLRTIKKEILKLVDAYISRAEDLELVGNT 776
Query: 779 --------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
QNVPDAR++EVL+L TI+N+ + D +P + +A+F CTLEMI+
Sbjct: 777 LIPALFEAVLLDYLQNVPDARDAEVLNLITTIVNQLSELLTDKIPLVLDAVFGCTLEMIS 836
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
K+F +YPEHR FF LLRAI +CFPAL+ + + Q KLV++SI+W+F+H R+I ETGLN
Sbjct: 837 KDFSEYPEHRAAFFQLLRAINLNCFPALLNIPAPQFKLVINSIVWSFKHVSRDIQETGLN 896
Query: 885 LLLEMLKNFQA--SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVE 942
+LLE++ N + + N F++TY++++ Q+I VLTD+ HK GFKL L+L LF LVE
Sbjct: 897 ILLELINNMASMGPDVSNAFFQTYYISLLQDILYVLTDSDHKSGFKLQSLILARLFYLVE 956
Query: 943 SGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLS 1002
S +T PL+D + P NN +F+R+Y + LL T+FP++ ++ +FV +L D
Sbjct: 957 SNQITVPLYDPSQFPQEM-NNQLFLRQYIMNLLVTAFPHLQPIQIQEFVQTVLALNQDSI 1015
Query: 1003 TFKNHIRDFLVQSKEFSAQDNKDLYAEEA----AAQRERERQRMLSIPGLIAP 1051
FK +RDFL+Q KEF DN +LY EE AAQ++ + ++ +++PG+I P
Sbjct: 1016 KFKLALRDFLIQLKEFGG-DNAELYLEEKEQELAAQQKAQLEKAMTVPGMIKP 1067
|
Receptor for the leucine-rich nuclear export signal (NES). Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54EV7|XPO1_DICDI Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/1085 (46%), Positives = 731/1085 (67%), Gaps = 58/1085 (5%)
Query: 4 EKLRDLSQPMDVALLDATVAAFYGT-GSKEERTAADQILRDLQNNPDMWLQVVHILQNSK 62
E + + ++P+D+ LLD V+ Y +K + AA +L Q +PD W +V IL+ SK
Sbjct: 2 ENILNFNEPLDINLLDQIVSVLYNPLSNKNDIKAAQMVLGKFQEHPDAWSKVDTILETSK 61
Query: 63 NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLN 122
+ TKF AL +++ +IKYRW +LP EQ +G+KNYI +I++LSS+ + E+L VNKLN
Sbjct: 62 IVQTKFIALVIMDSLIKYRWKSLPREQCEGIKNYIVSLIIRLSSDPQTSSREKLLVNKLN 121
Query: 123 IILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKI 182
++ VQILK EW W +FIP++++++KT+E++CEN M IL+LLSEE+F+FS +MTQ KI
Sbjct: 122 LVFVQILKQEWTTNWSTFIPEIISSSKTNESLCENNMVILRLLSEEIFNFSEEQMTQTKI 181
Query: 183 KELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE-------- 234
+ LK + EF LI++LC Y+L + R LI+ATL TL FL+W+PL YI E
Sbjct: 182 QTLKITFEKEFSLINDLCFYILENATRASLIKATLETLQRFLNWVPLHYIIEVNGGIAEP 241
Query: 235 SPLLETLL-KFFPMPSYRNLTLQCLTEVGALNFGDF-YNVQYVNMYNVFMVQLQTILPPT 292
S L++ LL K+FP P +RN TL+CLTE+G LN G+ Y+ ++ + + FM Q++ I P
Sbjct: 242 SKLVKLLLHKYFPEPLFRNSTLKCLTEIGNLNLGNQQYDAVFIAIIDKFMNQIKFIKPDP 301
Query: 293 TNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVD 352
+ IP+ Y G+ E++FI ++LF T FFK H++++E++ NI L + E L+NIS +D
Sbjct: 302 SKIPQDYEDGDQGERSFIHTVSLFLTGFFKSHLKIMENSL-NIPYLTLAHEILVNISNID 360
Query: 353 ETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQL 412
E E+FK+CL+YWN L+ + T ++ P R QL
Sbjct: 361 ELELFKICLEYWNFLSSNLYS-----DIATFTTTLLSTP----------------PRLQL 399
Query: 413 YAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLD 472
Y LSK+R+++I MAKPEEV++VEDENGNIVRET KD D L Y+ MRETLI+L+HLD
Sbjct: 400 YKSVLSKVRVVLIDHMAKPEEVIVVEDENGNIVRETTKDTDSLTLYESMRETLIFLTHLD 459
Query: 473 HEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLC 532
E+T+ ML+KL +SG ++T+ LNTLCWAIGSISG+ +EQE RFLV VI+DLL LC
Sbjct: 460 SENTQHIMLEKLQTLISGREFTFQRLNTLCWAIGSISGAQNKEQEKRFLVTVIKDLLELC 519
Query: 533 EMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTF 592
+ KGKDNKAVIAS+IMY+VGQYPRFL+ HWKFLKTVVNKLFEFMHE+HPGVQDMACDTF
Sbjct: 520 QNKKGKDNKAVIASDIMYIVGQYPRFLKDHWKFLKTVVNKLFEFMHESHPGVQDMACDTF 579
Query: 593 LKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQ 652
LKI ++CKRKFV++QV E++PF++ELL+ L+TT+A LE QIHTFYE+VG+MI + SD
Sbjct: 580 LKISKQCKRKFVVLQVEESQPFINELLNQLSTTIAHLEQSQIHTFYEAVGYMIASSSDAA 639
Query: 653 KREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLS 712
RE+ + + M LPN W +I+ A V+ L +V R +LN+++TN A +L +++
Sbjct: 640 FREKLVNKFMELPNHSWLQIMGAASVKVESLLTVEVARDILNLIKTNNRAAMSLENCYIT 699
Query: 713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAED 772
QIS I+LD+LNVY+ YS+ IS P + + + +RSVK+ETLKL+ETF++K+ D
Sbjct: 700 QISKIYLDLLNVYRTYSDHISR-----NPNIYRETLGQAMRSVKKETLKLLETFIEKSSD 754
Query: 773 ---------QPQIG------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQ 817
QP + + N+P+ R+ EVLSL II K + +VP+I EA+F+
Sbjct: 755 KQVIYSNFLQPLLEAVLGDYRTNIPETRDPEVLSLMTAIITSLKQLVHPEVPKILEAVFE 814
Query: 818 CTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERN 877
TL MITKNFEDYP HR+ FF+L+RAI ++ F L QQ KL++D ++WAF+HTERN
Sbjct: 815 TTLSMITKNFEDYPYHRINFFNLIRAINSNAFTVFHNLHPQQFKLLIDCVVWAFKHTERN 874
Query: 878 IAETGLNLLLEMLKNF-QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQH 936
I+ETGL++L E+++N + S+ N F++TY V++ +I +LTD+FHK GF L +L+
Sbjct: 875 ISETGLHILKELIENVSKNSDVANVFFKTYLVSLLNDILYILTDSFHKSGFALECDILRM 934
Query: 937 LFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLE 996
+F +VE+G++ PL+D +P+N+ +V+E + L S PN++ ++ FV L
Sbjct: 935 MFQVVENGVVKIPLFDPQQA--NFPSNSEYVKEIVVTFLSAS-PNVSRPQIQAFVTRLFN 991
Query: 997 SRN-DLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQ 1055
N + + FK+ RDFL+ KE+ + +N DLY++E ++ ++ IPG++ PN++
Sbjct: 992 LANINNNDFKSATRDFLITLKEWKSHENADLYSDEKNIEKALALKKQSMIPGMVRPNDVN 1051
Query: 1056 DEMVD 1060
EM D
Sbjct: 1052 LEMND 1056
|
Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES). Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1 | Back alignment and function description |
|---|
Score = 982 bits (2539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/1080 (46%), Positives = 706/1080 (65%), Gaps = 49/1080 (4%)
Query: 3 AEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSK 62
A KL D SQ +D+ LLD V Y T E+ A IL L+ +P+ W +V IL+ S+
Sbjct: 10 AGKLLDFSQKLDINLLDKIVEVVY-TAQGEQLRLAQSILTTLKEHPEAWTRVDSILEYSQ 68
Query: 63 NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLN 122
N TKF+ALQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ + ++Y+NKLN
Sbjct: 69 NQRTKFYALQILEEVIKTRWKVLPRNQCEGIKKYVVSLIIKTSSDPIVMEQNKVYLNKLN 128
Query: 123 IILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKI 182
+ILV ILK EWP W +FI D+V A+KT+E++C N M ILK LSEEVFDFS+G++TQ K
Sbjct: 129 MILVHILKREWPRNWETFISDIVGASKTNESLCMNNMVILKNLSEEVFDFSQGQITQTKA 188
Query: 183 KELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL 242
K LK ++ SEF I LC +VL S LI TL TL FL+WIPLGYIFE+ +ETL+
Sbjct: 189 KHLKDTMCSEFSQIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLI 248
Query: 243 -KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAH 301
KF +P +RN+TL+CL+E+ L + Y+ + ++ MVQL+ I+ N+ + H
Sbjct: 249 FKFLSVPMFRNVTLKCLSEIAGLTAAN-YDENFATLFKDTMVQLEQIVGQNMNMNHVFKH 307
Query: 302 GNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCL 361
G+ EQ + NLA+F +F K H +++E + + L L YL+ IS V++ EVFK+CL
Sbjct: 308 GSDTEQELVLNLAMFLCTFLKEHGKLVEDAKY-VDYLNQALMYLVMISEVEDVEVFKICL 366
Query: 362 DYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLR 421
+YWNS V +L+++ P++ Q+ RR+ YA LSK+R
Sbjct: 367 EYWNSLVEDLYNSE-----------------FFHPTLESTKRQQVYPRRRFYAPILSKVR 409
Query: 422 MLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQML 481
+MI RMAKPEEVL+VE+ENG +VRE MKD + + YK MRETL++L+HLD DT++ M
Sbjct: 410 FIMISRMAKPEEVLVVENENGEVVREFMKDTNSINLYKNMRETLVFLTHLDSVDTDRIMT 469
Query: 482 KKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNK 541
KL Q++G +++W NLNTLCWAIGSISG+ EE E RFLV VI+DLL LCE KGKDNK
Sbjct: 470 LKLLNQVNGSEFSWKNLNTLCWAIGSISGAFCEEDEKRFLVTVIKDLLGLCEQKKGKDNK 529
Query: 542 AVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKR 601
A+IASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI KC+R
Sbjct: 530 AIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAIKCRR 589
Query: 602 KFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRL 661
FV +Q E F+ E+L+ +++ + DL+P Q+HTFYE+VG+MI A+ D +++ ++R
Sbjct: 590 YFVTIQPNEACTFIDEILTTMSSIICDLQPQQVHTFYEAVGYMISAQVDQVQQDVLIERY 649
Query: 662 MLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDM 721
M LPNQ W +II++A ++VDFLK+ ++ + +IL+TN + ALG ++ Q+ I+LDM
Sbjct: 650 MQLPNQVWDDIISRASKNVDFLKNMTAVKQLGSILKTNVAACKALGHAYVIQLGRIYLDM 709
Query: 722 LNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQI----- 776
LNVYK+ SE I +I G + +K + VK+ETL LI ++ ++ D +
Sbjct: 710 LNVYKITSENIIQAIEVNGVNVNNQPLIKTMHVVKKETLNLISEWVSRSNDNQLVMDNFI 769
Query: 777 -----------GKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
+ VP ARE +VLS A I++K + + ++VP+IF+A+F+CTL+MI K
Sbjct: 770 PPLLDAILLDYQRCKVPSAREPKVLSAMAIIVHKLRQHITNEVPKIFDAVFECTLDMINK 829
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFED+P+HRL F+ LL+A+ HCF A + + Q KLV DS++WAF+HT RN+A+ GLN+
Sbjct: 830 NFEDFPQHRLSFYELLQAVNAHCFKAFLNIPPAQFKLVFDSVVWAFKHTMRNVADMGLNI 889
Query: 886 LLEMLKNF-QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG 944
L +ML+N Q FY+TYF I +IF+V+TDT H G H ++L ++F LVE+
Sbjct: 890 LFKMLQNLDQHPGAAQSFYQTYFTDILMQIFSVVTDTSHTAGLPNHAIILAYMFSLVENR 949
Query: 945 LLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTF 1004
+T L P P+N +F++EY LL ++F +++ +V FV GL ++ F
Sbjct: 950 KITVNLG-------PIPDNMIFIQEYVASLLKSAFTHLSDNQVKVFVTGLFNLDENVQAF 1002
Query: 1005 KNHIRDFLVQSKEFSAQDNKDLY----AEEAAAQRERERQRMLSIPGLIAPNEIQDEMVD 1060
K H+RDFL+Q +E + +D+ DLY A ++ + Q +IPG++ P+E+ ++M D
Sbjct: 1003 KEHLRDFLIQIREATGEDDSDLYLEEREAALAEEQSNKHQMQRNIPGMLNPHELPEDMQD 1062
|
Receptor for the leucine-rich nuclear export signal (NES). Binds cooperatively to the NES on its target protein and to the small GTPase Ran in its active GTP-bound form. Required for the function or maintenance of certain tissues such as brain and gut. Involved in the export of dl from the nucleus to the cytoplasm. Drosophila melanogaster (taxid: 7227) |
| >sp|P30822|XPO1_YEAST Exportin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1087 (41%), Positives = 670/1087 (61%), Gaps = 38/1087 (3%)
Query: 4 EKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKN 63
E + D S +D+ALLD V+ FY GS ++ A +IL Q+NPD W + ILQ S N
Sbjct: 2 EGILDFSNDLDIALLDQVVSTFY-QGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTN 60
Query: 64 LNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNI 123
+KF AL +L+ +I +W LP + R G++N++ +I+ + ++ F+ ++ +NK ++
Sbjct: 61 PQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDL 120
Query: 124 ILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIK 183
LVQILK EWP W FIP+L+ ++ +S +CEN M +LKLLSEEVFDFS +MTQ K
Sbjct: 121 TLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKAL 180
Query: 184 ELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL-L 242
LK S++ EF+ I +LC VL + LI ATL +L +L WIP YI+E+ +LE L
Sbjct: 181 HLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLST 240
Query: 243 KFFPMPSYRNLTLQCLTEVGALNF---GDFYNVQYVNMYNVFMVQLQT-ILPPTTNIPEA 298
KF P R +TL+CLTEV L D Q V + + Q+ T ++P T ++
Sbjct: 241 KFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKAT 300
Query: 299 YAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFK 358
YA+ N +Q+F+Q+LA+F T++ + +LES + LL +YLI +S ++E E+FK
Sbjct: 301 YANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFK 360
Query: 359 VCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGA---QLLQR----RQ 411
LDYW++ V +LF L PA + + ++ G GA + ++R +
Sbjct: 361 TTLDYWHNLVADLFYEVQRL--PATEMSPLIQLSVGSQAISTGSGALNPEYMKRFPLKKH 418
Query: 412 LYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHL 471
+Y S+LR+++I M +PEEVL+VE++ G IVRE +K++D + YK RE L+YL+HL
Sbjct: 419 IYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL 478
Query: 472 DHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNL 531
+ DTE+ M+ KL++Q+ G +W+W+N+NTL WAIGSISG+M E+ E RF+V VI+DLL+L
Sbjct: 479 NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 538
Query: 532 CEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDT 591
+GKDNKAV+AS+IMYVVGQYPRFL+AHW FL+TV+ KLFEFMHETH GVQDMACDT
Sbjct: 539 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT 598
Query: 592 FLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDV 651
F+KIVQKCK FVI Q E+EPF+ ++ + T ADL+P Q+HTFY++ G +I E V
Sbjct: 599 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 658
Query: 652 QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFL 711
+R L LM LPN W I+ Q+ + L D + ++ + NI++TN +V +++G F
Sbjct: 659 AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFY 718
Query: 712 SQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAE 771
Q+ I+ +ML +Y+ S +IS+ +++ G A+KT V+ LR++K+E LKL+ET++ KA
Sbjct: 719 PQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR 778
Query: 772 DQPQIGK---------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIF 816
+ + K NVPDAR++EVL+ T++ K + V I +++F
Sbjct: 779 NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVF 838
Query: 817 QCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTER 876
+CTL+MI K+F +YPEHR++F+ LL+ I F A + L KL +D+I WAF+H R
Sbjct: 839 ECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNR 898
Query: 877 NIAETGLNLLLEMLKNFQA---SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLV 933
++ GL + L+++KN + F N+F++ YF E F VLTD+ HK GF L+
Sbjct: 899 DVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALL 958
Query: 934 LQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDG 993
L L LV ++ PL+ A +P +N +++ +Y +L +FP++T+ ++ F+
Sbjct: 959 LMKLISLVYDNKISVPLYQEAEVPQG-TSNQVYLSQYLANMLSNAFPHLTSEQIASFLSA 1017
Query: 994 LLESRNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAA----AQRERERQRMLSIPGLI 1049
L + DL FK +RDFLVQ KE L+AE+ Q ER++ I GL+
Sbjct: 1018 LTKQYKDLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKENALMEQNRLEREKAAKIGGLL 1077
Query: 1050 APNEIQD 1056
P+E+ D
Sbjct: 1078 KPSELDD 1084
|
Receptor for the leucine-rich nuclear export signal (NES). Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 29/232 (12%)
Query: 29 GSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVE 88
+ ++R + L +++ + + I+ S N K FAL ++E ++K RW +
Sbjct: 24 SNNKQREESQVFLEEIKTRANAHSYAIAIITTSNNDILKHFALHIIETLVKNRWYECNDQ 83
Query: 89 QRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAA 148
+R+ +K I E++ +++SNE F +E+L ILV ++K +WP RW + + L+ +
Sbjct: 84 ERELIKKEILELMRRITSNEPKFIKEKLVT-----ILVDVIKRDWPQRWMNLLTSLIEIS 138
Query: 149 KTSETICENCMAILKLLSEEVFDFSRGEMTQ----QKIKELKQSLN----SEFQLIHELC 200
K S+T E ++ LL ++ F G +Q Q+ K+L +N S F+ ++L
Sbjct: 139 KISDTQTELVLSTFGLLPHDII-FDTGSTSQVLSDQRRKDLMAGINLAVTSLFEYFYQLL 197
Query: 201 ---------------LYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPL 237
Q LI L+TL +++ W+P IF+ L
Sbjct: 198 ESKYTQYKQPTPATTTTPQQTKQVIHLINVLLTTLRSYIEWVPSKVIFDHKL 249
|
Mediates the nuclear export of micro-RNA precursors, which form short hairpins. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9HAV4|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 67 KFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILV 126
+ F LQ+LE V+K+RWN + ++ +KN + E+I + N EE + L+ I+V
Sbjct: 64 RHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLN--ILEEENHIKDALSRIVV 121
Query: 127 QILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELK 186
+++K EWP W + +L +K ET E M IL L+E+V F + Q+ ++++
Sbjct: 122 EMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQ--TLPPQRRRDIQ 179
Query: 187 QSLNSEFQLIHELCLYVLSAS------QRTDLIR------------ATLSTLHAFLSWIP 228
Q+L + I L L + +TD + A L+TL ++ W+
Sbjct: 180 QTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS 239
Query: 229 LGYI 232
+ +I
Sbjct: 240 MSHI 243
|
Mediates the nuclear export of micro-RNA precursors, which form short hairpins. Also mediates the nuclear export of synthetic short hairpin RNAs used for RNA interference, and adenovirus VA1 dsRNA. In some circumstances can also mediate the nuclear export of deacylated and aminoacylated tRNAs. Specifically recognizes dsRNAs that lack a 5'-overhang in a sequence-independent manner, have only a short 3'-overhang, and that have a double-stranded length of at least 15 base-pairs. Binding is dependent on Ran-GTP. Homo sapiens (taxid: 9606) |
| >sp|Q924C1|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 24/195 (12%)
Query: 67 KFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILV 126
+ F LQ+LE V+K+RWN++ ++ +KN + E+I + EE + L+ I+V
Sbjct: 64 RHFGLQILEHVVKFRWNSMSRLEKVYLKNSVMELIA--NGTLRILEEENHIKDVLSRIVV 121
Query: 127 QILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELK 186
+++K EWP W + +L + ET E M IL L+E+V F + Q+ ++++
Sbjct: 122 EMIKREWPQHWPDMLMELDTLFRQGETQRELVMFILLRLAEDVVTFQ--TLPTQRRRDIQ 179
Query: 187 QSLNSEFQLIHELCLYVL------------SASQRTD------LIRATLSTLHAFLSWIP 228
Q+L + I L L +SQ + + A L+TL ++ W+
Sbjct: 180 QTLTQNMERILNFLLNTLQENVNKYQQMKTDSSQEAEAQANCRVSVAALNTLAGYIDWVS 239
Query: 229 LGYIF--ESPLLETL 241
L +I L+ETL
Sbjct: 240 LNHITAENCKLVETL 254
|
Mediates the nuclear export of micro-RNA precursors, which form short hairpins. Also mediates the nuclear export of synthetic short hairpin RNAs used for RNA interference, and adenovirus VA1 dsRNA. In some circumstances can also mediate the nuclear export of deacylated and aminoacylated tRNAs. Specifically recognizes dsRNAs that lack a 5'-overhang in a sequence-independent manner, have only a short 3'-overhang, and that have a double-stranded length of at least 15 base-pairs. Binding is dependent on Ran-GTP. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1061 | ||||||
| 225454813 | 1076 | PREDICTED: exportin-1 isoform 1 [Vitis v | 1.0 | 0.986 | 0.915 | 0.0 | |
| 224126655 | 1076 | predicted protein [Populus trichocarpa] | 1.0 | 0.986 | 0.914 | 0.0 | |
| 359489899 | 1069 | PREDICTED: exportin-1 isoform 3 [Vitis v | 0.993 | 0.985 | 0.908 | 0.0 | |
| 224144913 | 1076 | predicted protein [Populus trichocarpa] | 1.0 | 0.986 | 0.901 | 0.0 | |
| 359489897 | 1061 | PREDICTED: exportin-1 isoform 2 [Vitis v | 0.985 | 0.985 | 0.902 | 0.0 | |
| 255557979 | 1069 | chromosome region maintenance protein 1/ | 0.988 | 0.981 | 0.907 | 0.0 | |
| 449438799 | 1076 | PREDICTED: exportin-1-like [Cucumis sati | 1.0 | 0.986 | 0.897 | 0.0 | |
| 356543438 | 1077 | PREDICTED: exportin-1-like isoform 1 [Gl | 1.0 | 0.985 | 0.886 | 0.0 | |
| 356538463 | 1077 | PREDICTED: exportin-1-like isoform 1 [Gl | 1.0 | 0.985 | 0.883 | 0.0 | |
| 297807725 | 1076 | hypothetical protein ARALYDRAFT_909689 [ | 1.0 | 0.986 | 0.872 | 0.0 |
| >gi|225454813|ref|XP_002275630.1| PREDICTED: exportin-1 isoform 1 [Vitis vinifera] gi|147799770|emb|CAN61845.1| hypothetical protein VITISV_008353 [Vitis vinifera] gi|297737334|emb|CBI26535.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2063 bits (5345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1076 (91%), Positives = 1035/1076 (96%), Gaps = 15/1076 (1%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DVALLDATVAAFYGTGSKEERTAADQILR+LQNNPDMWLQVVHILQ+
Sbjct: 1 MAAEKLRDLSQPIDVALLDATVAAFYGTGSKEERTAADQILRELQNNPDMWLQVVHILQS 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
++NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 61 TQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRRERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LNIILVQ+LKHEWPARWRSFIPDLV+AAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNIILVQVLKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQRT+LIRATL+TLHAFLSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLATLHAFLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+PSYRNLTLQCLTEV ALNFGDFYN+QYV MYN+FMVQLQ+ILP TTNIPEAYA
Sbjct: 241 LLKFFPVPSYRNLTLQCLTEVAALNFGDFYNLQYVKMYNIFMVQLQSILPTTTNIPEAYA 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
HG+SEEQAFIQNLALFFTSF+K HIRVLES+QENISALL+GLEYLI ISYVD+TEVFKVC
Sbjct: 301 HGSSEEQAFIQNLALFFTSFYKSHIRVLESSQENISALLLGLEYLIGISYVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELF+AH+NL+NPAV ANMMGL +PL+P +VDG+G+QLLQRRQLY+ P+SKL
Sbjct: 361 LDYWNSLVLELFEAHHNLDNPAVAANMMGLQIPLIPGMVDGLGSQLLQRRQLYSGPMSKL 420
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
R+LMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM
Sbjct: 421 RLLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
LKKLSKQL GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 481 LKKLSKQLKGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDN 540
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYP+FLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 541 KAVIASNIMYVVGQYPKFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVI+QVGENEPFVSELLSGL +T+ADLEPHQIHTFYESVGHMIQAESD QKR+EYLQR
Sbjct: 601 RKFVIIQVGENEPFVSELLSGLPSTIADLEPHQIHTFYESVGHMIQAESDPQKRDEYLQR 660
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QARQSVDFLKDQDVIRTVLNILQTNTSVA++LGT+FLSQI++IFLD
Sbjct: 661 LMELPNQKWAEIIGQARQSVDFLKDQDVIRTVLNILQTNTSVATSLGTYFLSQITLIFLD 720
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSELIS+SI+ GGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ
Sbjct: 721 MLNVYRMYSELISNSIAEGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQF 780
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
NVPDARESEVLSLFATIINKYKGAMI+DVPRIFEA FQCTLEMITK
Sbjct: 781 VPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIEDVPRIFEASFQCTLEMITK 840
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 841 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 900
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQASEFCNQFYRTYF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG
Sbjct: 901 LLEMLKNFQASEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGA 960
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
LTEPLWD +T+ YPYPNN MFVREYTIKLL TSFPNMT +EVTQFV GL ESRNDLSTFK
Sbjct: 961 LTEPLWDVSTVAYPYPNNTMFVREYTIKLLSTSFPNMTTSEVTQFVTGLFESRNDLSTFK 1020
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEM+DS
Sbjct: 1021 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1076
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126655|ref|XP_002319892.1| predicted protein [Populus trichocarpa] gi|222858268|gb|EEE95815.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2050 bits (5310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1076 (91%), Positives = 1026/1076 (95%), Gaps = 15/1076 (1%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEK RDLSQ +DV LLDATVAAFYGTGSKEER AAD+IL+DLQNNPDMWLQVVHILQN
Sbjct: 1 MAAEKFRDLSQAIDVPLLDATVAAFYGTGSKEERVAADRILQDLQNNPDMWLQVVHILQN 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
+KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 61 TKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRMERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ LVQILKHEWPARWRSFIPDLVAAAKTSETICENCM ILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNVTLVQILKHEWPARWRSFIPDLVAAAKTSETICENCMVILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQRT+LIRATLSTLHAFLSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFPMPSYRNLTLQCLTEV ALNFGDFYN+QYV MYN FMVQLQ ILP TTNIPEAYA
Sbjct: 241 LLKFFPMPSYRNLTLQCLTEVAALNFGDFYNIQYVKMYNFFMVQLQAILPLTTNIPEAYA 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
+G+SEEQAFIQNLALFFTSF+K HI+VLESTQENI+ALLMGLEYLINI YVD+TEVFKVC
Sbjct: 301 NGSSEEQAFIQNLALFFTSFYKSHIQVLESTQENITALLMGLEYLINICYVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELF+A +NL+NPAV NMMGL MPLL +VDG+G+Q+LQRRQLYA P+SKL
Sbjct: 361 LDYWNSLVLELFEARHNLDNPAVAVNMMGLQMPLLHGMVDGLGSQILQRRQLYATPMSKL 420
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM
Sbjct: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
LKKLSKQLSGEDW WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 481 LKKLSKQLSGEDWNWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDN 540
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVIVQVGE+EPFVSELL+GL TTVADLEPHQIHTFYESVGHMIQAESD QKR+EYLQR
Sbjct: 601 RKFVIVQVGESEPFVSELLAGLPTTVADLEPHQIHTFYESVGHMIQAESDPQKRDEYLQR 660
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QARQSVDFLKDQDVIRTVLNI+QTNTSVASALGT+FLSQIS+IFLD
Sbjct: 661 LMDLPNQKWAEIIGQARQSVDFLKDQDVIRTVLNIMQTNTSVASALGTYFLSQISLIFLD 720
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSELISSSI+ GGP+ASKTSYVKLLRSVKRETLKLIETFLDKAEDQ QIGKQ
Sbjct: 721 MLNVYRMYSELISSSIAEGGPYASKTSYVKLLRSVKRETLKLIETFLDKAEDQTQIGKQF 780
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
N+PDARESEVLSLFATIINKYK AMI+DVPRIFEA+FQCTLEMITK
Sbjct: 781 VPPMMDPVLGDYARNLPDARESEVLSLFATIINKYKAAMIEDVPRIFEAVFQCTLEMITK 840
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIATHCFPALIRLSS+QLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 841 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSEQLKLVMDSIIWAFRHTERNIAETGLNL 900
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
L+EMLKNFQASEFCNQFYR+YF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG
Sbjct: 901 LVEMLKNFQASEFCNQFYRSYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGA 960
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
LTEPLWDAATI Y YPNNAMFVREYTIKLLGTSFPNMTA+EVTQFV+GL ESRNDLS FK
Sbjct: 961 LTEPLWDAATISYSYPNNAMFVREYTIKLLGTSFPNMTASEVTQFVNGLFESRNDLSAFK 1020
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEM+DS
Sbjct: 1021 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1076
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489899|ref|XP_003633992.1| PREDICTED: exportin-1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2043 bits (5294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1076 (90%), Positives = 1028/1076 (95%), Gaps = 22/1076 (2%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DVALLDATVAAFYGTGSKEERTAADQILR+LQNNPDMWLQVVHILQ+
Sbjct: 1 MAAEKLRDLSQPIDVALLDATVAAFYGTGSKEERTAADQILRELQNNPDMWLQVVHILQS 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
++NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 61 TQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRRERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LNIILVQ+LKHEWPARWRSFIPDLV+AAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNIILVQVLKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQRT+LIRATL+TLHAFLSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLATLHAFLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+PSYRNLTLQCLTEV ALNFGDFYN+QYV MYN+FMVQLQ+ILP TTNIPEAYA
Sbjct: 241 LLKFFPVPSYRNLTLQCLTEVAALNFGDFYNLQYVKMYNIFMVQLQSILPTTTNIPEAYA 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
HG+SEEQAFIQNLALFFTSF+K HIRVLES+QENISALL+GLEYLI ISYVD+TEVFKVC
Sbjct: 301 HGSSEEQAFIQNLALFFTSFYKSHIRVLESSQENISALLLGLEYLIGISYVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELF+AH+NL+NPAV ANMMGL +PL+P +VDG+G+QLLQRRQLY+ P+SKL
Sbjct: 361 LDYWNSLVLELFEAHHNLDNPAVAANMMGLQIPLIPGMVDGLGSQLLQRRQLYSGPMSKL 420
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
R+LMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM
Sbjct: 421 RLLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
LKKLSKQL GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 481 LKKLSKQLKGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDN 540
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYP+FLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 541 KAVIASNIMYVVGQYPKFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVI+QVGENEPFVSELLSGL +T+ADLEPHQIHTFYESVGHMIQAESD QKR+EYLQR
Sbjct: 601 RKFVIIQVGENEPFVSELLSGLPSTIADLEPHQIHTFYESVGHMIQAESDPQKRDEYLQR 660
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QARQSVDFLKDQDVIRTVLNILQTNTSVA++LGT+FLSQI++IFLD
Sbjct: 661 LMELPNQKWAEIIGQARQSVDFLKDQDVIRTVLNILQTNTSVATSLGTYFLSQITLIFLD 720
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSELIS+SI+ GGPFASKT SVKRETLKLIETFLDKAEDQPQIGKQ
Sbjct: 721 MLNVYRMYSELISNSIAEGGPFASKT-------SVKRETLKLIETFLDKAEDQPQIGKQF 773
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
NVPDARESEVLSLFATIINKYKGAMI+DVPRIFEA FQCTLEMITK
Sbjct: 774 VPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIEDVPRIFEASFQCTLEMITK 833
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 834 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 893
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQASEFCNQFYRTYF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG
Sbjct: 894 LLEMLKNFQASEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGA 953
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
LTEPLWD +T+ YPYPNN MFVREYTIKLL TSFPNMT +EVTQFV GL ESRNDLSTFK
Sbjct: 954 LTEPLWDVSTVAYPYPNNTMFVREYTIKLLSTSFPNMTTSEVTQFVTGLFESRNDLSTFK 1013
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEM+DS
Sbjct: 1014 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1069
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144913|ref|XP_002325460.1| predicted protein [Populus trichocarpa] gi|222862335|gb|EEE99841.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2029 bits (5257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 970/1076 (90%), Positives = 1021/1076 (94%), Gaps = 15/1076 (1%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEK RDLSQ +DV LLDATVAAFYGTGSKEER AAD+IL+DLQ+NPDMWLQVVHILQN
Sbjct: 1 MAAEKFRDLSQAIDVPLLDATVAAFYGTGSKEERAAADRILQDLQSNPDMWLQVVHILQN 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
+KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 61 TKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRMERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ LVQILKHEWPARWRSFIPDLVAAAKTSETICENCM ILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNVTLVQILKHEWPARWRSFIPDLVAAAKTSETICENCMVILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQRT+LI+ATLSTLHAFLSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTELIQATLSTLHAFLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFPMPSYRNLTLQCLTEV ALNFGDFYN+QY+ MYN FMVQLQ ILP TT IPEAYA
Sbjct: 241 LLKFFPMPSYRNLTLQCLTEVAALNFGDFYNMQYIKMYNFFMVQLQAILPSTTKIPEAYA 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
+G+SEEQAFIQNLALFFTSF+K HIRVLES+QENISALLMGLEYLINIS+VD+TEVFKVC
Sbjct: 301 NGSSEEQAFIQNLALFFTSFYKSHIRVLESSQENISALLMGLEYLINISFVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELF+ H+NL+ PA T NMMGL MPLL +VDG+G+Q+LQRRQLYA P+SKL
Sbjct: 361 LDYWNSLVLELFEPHHNLDTPAATVNMMGLQMPLLHGMVDGLGSQILQRRQLYAAPMSKL 420
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM
Sbjct: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
LKKLSKQLSGEDW WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 481 LKKLSKQLSGEDWNWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDN 540
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVIVQVGE+EPFVSELLSGL TTVADLEPHQIHTFYESVGHMIQAESD+QKR+EY+QR
Sbjct: 601 RKFVIVQVGESEPFVSELLSGLPTTVADLEPHQIHTFYESVGHMIQAESDLQKRDEYMQR 660
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QA QSVDFLKDQ+VIRTVLNILQTNTSVA++LGT+FLSQIS+IFLD
Sbjct: 661 LMDLPNQKWAEIIGQAHQSVDFLKDQEVIRTVLNILQTNTSVANSLGTYFLSQISLIFLD 720
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSELISSSI+ GGP+ASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ
Sbjct: 721 MLNVYRMYSELISSSIAEGGPYASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQF 780
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
N+PDARESEVLSLFATIINKYK AMI+DVPRIFEA+FQCTLEMITK
Sbjct: 781 VPPMMDPVLGDYARNLPDARESEVLSLFATIINKYKAAMIEDVPRIFEAVFQCTLEMITK 840
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIA HCFPALIRLSS+QLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 841 NFEDYPEHRLKFFSLLRAIAAHCFPALIRLSSEQLKLVMDSIIWAFRHTERNIAETGLNL 900
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQASEFCNQFYR+YF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFC ESG
Sbjct: 901 LLEMLKNFQASEFCNQFYRSYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCSAESGA 960
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
L+EPLWD T+PYPY NNAMFVREYTIKLLGTSFPNMTA+EVTQFV+GL ES+N+LS FK
Sbjct: 961 LSEPLWDTTTVPYPYLNNAMFVREYTIKLLGTSFPNMTASEVTQFVNGLFESKNNLSIFK 1020
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
NHIRDFLVQSKEFSAQDNKDLYAEEAA QRERERQRMLSIPGLIAPNEIQDEM+DS
Sbjct: 1021 NHIRDFLVQSKEFSAQDNKDLYAEEAAVQRERERQRMLSIPGLIAPNEIQDEMLDS 1076
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489897|ref|XP_003633991.1| PREDICTED: exportin-1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2028 bits (5255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 971/1076 (90%), Positives = 1021/1076 (94%), Gaps = 30/1076 (2%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DVALLDATVAAFYGTGSKEERTAADQILR+LQNNPDMWLQVVHILQ+
Sbjct: 1 MAAEKLRDLSQPIDVALLDATVAAFYGTGSKEERTAADQILRELQNNPDMWLQVVHILQS 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
++NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 61 TQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRRERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LNIILVQ+LKHEWPARWRSFIPDLV+AAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNIILVQVLKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQRT+LIRATL+TLHAFLSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLATLHAFLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+PSYRNLTLQCLTEV ALNFGDFYN+QYV MYN+FMVQLQ+ILP TTNIPEAYA
Sbjct: 241 LLKFFPVPSYRNLTLQCLTEVAALNFGDFYNLQYVKMYNIFMVQLQSILPTTTNIPEAYA 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
HG+SEEQ+ HIRVLES+QENISALL+GLEYLI ISYVD+TEVFKVC
Sbjct: 301 HGSSEEQS---------------HIRVLESSQENISALLLGLEYLIGISYVDDTEVFKVC 345
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELF+AH+NL+NPAV ANMMGL +PL+P +VDG+G+QLLQRRQLY+ P+SKL
Sbjct: 346 LDYWNSLVLELFEAHHNLDNPAVAANMMGLQIPLIPGMVDGLGSQLLQRRQLYSGPMSKL 405
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
R+LMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM
Sbjct: 406 RLLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 465
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
LKKLSKQL GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 466 LKKLSKQLKGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDN 525
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYP+FLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 526 KAVIASNIMYVVGQYPKFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 585
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVI+QVGENEPFVSELLSGL +T+ADLEPHQIHTFYESVGHMIQAESD QKR+EYLQR
Sbjct: 586 RKFVIIQVGENEPFVSELLSGLPSTIADLEPHQIHTFYESVGHMIQAESDPQKRDEYLQR 645
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QARQSVDFLKDQDVIRTVLNILQTNTSVA++LGT+FLSQI++IFLD
Sbjct: 646 LMELPNQKWAEIIGQARQSVDFLKDQDVIRTVLNILQTNTSVATSLGTYFLSQITLIFLD 705
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSELIS+SI+ GGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ
Sbjct: 706 MLNVYRMYSELISNSIAEGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQF 765
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
NVPDARESEVLSLFATIINKYKGAMI+DVPRIFEA FQCTLEMITK
Sbjct: 766 VPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGAMIEDVPRIFEASFQCTLEMITK 825
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQASEFCNQFYRTYF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG
Sbjct: 886 LLEMLKNFQASEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGA 945
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
LTEPLWD +T+ YPYPNN MFVREYTIKLL TSFPNMT +EVTQFV GL ESRNDLSTFK
Sbjct: 946 LTEPLWDVSTVAYPYPNNTMFVREYTIKLLSTSFPNMTTSEVTQFVTGLFESRNDLSTFK 1005
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEM+DS
Sbjct: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1061
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557979|ref|XP_002520018.1| chromosome region maintenance protein 1/exportin, putative [Ricinus communis] gi|223540782|gb|EEF42342.1| chromosome region maintenance protein 1/exportin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2026 bits (5248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 976/1076 (90%), Positives = 1020/1076 (94%), Gaps = 27/1076 (2%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DV LLDATVAAFYGTGSKEER AAD+IL++LQ+NPDMW+QVVHILQN
Sbjct: 6 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEERAAADRILQELQSNPDMWMQVVHILQN 65
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
+KNLNTKFFALQVLEGVIKYRWNALPV+QRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 66 TKNLNTKFFALQVLEGVIKYRWNALPVQQRDGMKNYISEVIVQLSSNEASFRLERLYVNK 125
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 126 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 185
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQRT+LIRATLSTLHAFLSWIPLGYIFESPLLET
Sbjct: 186 KIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLET 245
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFPMPSYRNLTLQCLTEV ALNFGDFYN+QYV MY FMVQLQ ILPPTTNIPEAYA
Sbjct: 246 LLKFFPMPSYRNLTLQCLTEVAALNFGDFYNMQYVKMYTFFMVQLQAILPPTTNIPEAYA 305
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
HG+SEEQAFIQNL+LFFTSF+K HIRVLE+TQENISALLMGLEYLINISYVD+TEVFKVC
Sbjct: 306 HGSSEEQAFIQNLSLFFTSFYKSHIRVLETTQENISALLMGLEYLINISYVDDTEVFKVC 365
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELF+AH+NL+NPAVTANMMGL MPLL +VDGIG+Q+LQRRQLY P+SKL
Sbjct: 366 LDYWNSLVLELFEAHHNLDNPAVTANMMGLQMPLLHGMVDGIGSQILQRRQLYTGPMSKL 425
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM
Sbjct: 426 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 485
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
LKKLSKQLSGEDW+WNNL+TLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 486 LKKLSKQLSGEDWSWNNLSTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDN 545
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMAC+TFLKIV KCK
Sbjct: 546 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACETFLKIVTKCK 605
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVI+QVGE+EPFVSELL GL TTVADLEPHQIH+FYESVGHMIQAE D QKR+EYLQR
Sbjct: 606 RKFVILQVGESEPFVSELLIGLPTTVADLEPHQIHSFYESVGHMIQAEPDPQKRDEYLQR 665
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QARQSVDFLKDQ+VIRTVLNILQTNTSVAS+LGT+FL+QIS+IFLD
Sbjct: 666 LMDLPNQKWAEIIGQARQSVDFLKDQEVIRTVLNILQTNTSVASSLGTYFLTQISLIFLD 725
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSELISSSI+ GGP SVKRETLKLIETFLDKAEDQPQIGKQ
Sbjct: 726 MLNVYRMYSELISSSIADGGP------------SVKRETLKLIETFLDKAEDQPQIGKQF 773
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
N+PDARESEVLSLFA IINKYK AMIDDVPRIFEA+FQCTLEMITK
Sbjct: 774 VPPMMDPVLGDYARNLPDARESEVLSLFAIIINKYKAAMIDDVPRIFEAVFQCTLEMITK 833
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 834 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 893
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG
Sbjct: 894 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGA 953
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
LTEPLWDAAT+P PYPNNAMFVREYTIKLLGTSFPNMTA+EVTQFV+GL ESRNDLS FK
Sbjct: 954 LTEPLWDAATVPLPYPNNAMFVREYTIKLLGTSFPNMTASEVTQFVNGLFESRNDLSVFK 1013
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEM+DS
Sbjct: 1014 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1069
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438799|ref|XP_004137175.1| PREDICTED: exportin-1-like [Cucumis sativus] gi|449476468|ref|XP_004154745.1| PREDICTED: exportin-1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2020 bits (5233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 966/1076 (89%), Positives = 1023/1076 (95%), Gaps = 15/1076 (1%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DV LLDATVAAFYGTGSKEER+AADQILRDLQNN DMWLQVVHILQN
Sbjct: 1 MAAEKLRDLSQPIDVTLLDATVAAFYGTGSKEERSAADQILRDLQNNADMWLQVVHILQN 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
+KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYIS+VIVQLSSNEASFR ERLYVNK
Sbjct: 61 TKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISDVIVQLSSNEASFRVERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LNIILVQILKHEWPA+WRSFIPDLV+AA+TSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNIILVQILKHEWPAKWRSFIPDLVSAARTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCL+VLS SQRT+LIRATLSTLHAFLSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFQLIHELCLFVLSVSQRTELIRATLSTLHAFLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+PSYRNLTLQCLTEV ALNFGD+YN QY+ MY VFM +LQTILPP+TNIPEAYA
Sbjct: 241 LLKFFPVPSYRNLTLQCLTEVAALNFGDYYNRQYIEMYTVFMGRLQTILPPSTNIPEAYA 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
HG+SEEQAFIQNLALFFTSF+K HIRVLESTQE+I+ALLMGLEYLINISYVD+ EVFKVC
Sbjct: 301 HGSSEEQAFIQNLALFFTSFYKSHIRVLESTQESIAALLMGLEYLINISYVDDNEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELF+ H+N++NPAV+ANMMGL +PLL VVDG+GAQL+QRRQLY+ P+SKL
Sbjct: 361 LDYWNSLVLELFETHHNMDNPAVSANMMGLQVPLLSGVVDGLGAQLMQRRQLYSGPMSKL 420
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYK MRETLIYLSHLDH+DTEKQM
Sbjct: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKSMRETLIYLSHLDHDDTEKQM 480
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
LKKLS+QLSGEDW+WNNLNTLCWAIGSISGSMME+QENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 481 LKKLSRQLSGEDWSWNNLNTLCWAIGSISGSMMEDQENRFLVMVIRDLLNLCEITKGKDN 540
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVIVQVGE+EPFVSELL+ L TTVADLEPHQIHTFYESVG+MIQAE D QKR+EYLQR
Sbjct: 601 RKFVIVQVGESEPFVSELLTSLPTTVADLEPHQIHTFYESVGNMIQAEPDPQKRDEYLQR 660
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QARQSV+FLKDQDVIRTVLNILQTNTSVAS+LGT+FL QIS+IFLD
Sbjct: 661 LMDLPNQKWAEIIGQARQSVEFLKDQDVIRTVLNILQTNTSVASSLGTYFLPQISLIFLD 720
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSELISSSI+ GGP+ SKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ
Sbjct: 721 MLNVYRMYSELISSSIAGGGPYTSKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQF 780
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
N+PDARESEVLSLFATIINKYK MI+DVP IFEA+FQCTLEMITK
Sbjct: 781 VPPMMEPVLLDYARNLPDARESEVLSLFATIINKYKNTMIEDVPCIFEAVFQCTLEMITK 840
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIAT+CFPALIRLSSQ LKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 841 NFEDYPEHRLKFFSLLRAIATYCFPALIRLSSQHLKLVMDSIIWAFRHTERNIAETGLNL 900
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQASEFCNQFYRTYF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCL ESG+
Sbjct: 901 LLEMLKNFQASEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLAESGV 960
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
LTEPLWDAAT+ YPYPNN FVREYTIKLL +SFPNMTAAEVTQFV+GL +SRNDLS FK
Sbjct: 961 LTEPLWDAATVTYPYPNNVAFVREYTIKLLSSSFPNMTAAEVTQFVNGLFDSRNDLSVFK 1020
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRML+IPGLIAPNEIQDEMVDS
Sbjct: 1021 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLTIPGLIAPNEIQDEMVDS 1076
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543438|ref|XP_003540167.1| PREDICTED: exportin-1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1998 bits (5177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1077 (88%), Positives = 1016/1077 (94%), Gaps = 16/1077 (1%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DV LLDATVAAFYGTGSK+ER AADQILRDLQNNPDMWLQV+HILQN
Sbjct: 1 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKDERNAADQILRDLQNNPDMWLQVMHILQN 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
++NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKN+IS+VIVQLSSNEASFR ERLYVNK
Sbjct: 61 TQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSSNEASFRAERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LNIILVQILKHEWPARWRSFIPDLV+AAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQRT+LIRATLSTLHAFLSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+P+YRNLTLQCLTEV AL F ++Y+VQYV MYN+FMVQLQ ILPPTTNIPEAY
Sbjct: 241 LLKFFPVPAYRNLTLQCLTEVAALQFVNYYDVQYVKMYNIFMVQLQGILPPTTNIPEAYG 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
G+SEEQAFIQNLALFFTSF+KFHIR+LESTQENI+ALL+GLEY+INISYVD+TEVFKVC
Sbjct: 301 QGSSEEQAFIQNLALFFTSFYKFHIRILESTQENIAALLVGLEYVINISYVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMP-LLPSVVDGIGAQLLQRRQLYAVPLSK 419
LDYWNS V ELF+ H +L+NPA A MMGL +P +LP +VDG G+QLLQRRQLYA P+SK
Sbjct: 361 LDYWNSLVSELFEPHRSLDNPAAAATMMGLQVPAMLPGMVDGHGSQLLQRRQLYAGPMSK 420
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQ 479
LRMLMICRMAKPEEVLIVEDENGNIVRET+KDNDVLVQYKIMRETLIYLSHLDH+DTEKQ
Sbjct: 421 LRMLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTEKQ 480
Query: 480 MLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
ML+KLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKD
Sbjct: 481 MLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKD 540
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC
Sbjct: 541 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 600
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
KRKFVI QVGENEPFVSELL+GL T+ADLEPHQIH+FYESVGHMIQAESD QKR+EYLQ
Sbjct: 601 KRKFVITQVGENEPFVSELLTGLPITIADLEPHQIHSFYESVGHMIQAESDAQKRDEYLQ 660
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
RLM LPNQKW EII QA Q+VDFLKDQDVIRTVLNI+QTNTSVA++LGT+FL QIS+IFL
Sbjct: 661 RLMELPNQKWMEIIGQAHQNVDFLKDQDVIRTVLNIMQTNTSVATSLGTYFLPQISLIFL 720
Query: 720 DMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ 779
DMLNVY+MYSELIS SI+ GGPFAS+TSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ
Sbjct: 721 DMLNVYRMYSELISKSITEGGPFASRTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ 780
Query: 780 ---------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
NVPDARESEVLSLFATI+NKYK AMI+DVPRIFEA+FQCTLEMIT
Sbjct: 781 FVPPMMDPVLGDYSRNVPDARESEVLSLFATIVNKYKAAMIEDVPRIFEAVFQCTLEMIT 840
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
KNFEDYPEHRLKFFSLLRAIATHCFPALI LSSQQLKLVMDSIIWAFRHTERNIAETGLN
Sbjct: 841 KNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLN 900
Query: 885 LLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG 944
LLLEMLK FQ SEFCNQFYRTYF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCL+E+G
Sbjct: 901 LLLEMLKKFQGSEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLLETG 960
Query: 945 LLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTF 1004
LTEPLWD AT Y Y +NA+FVRE+TIKLL TSFPNMT+AEVTQFV+GL ES NDLSTF
Sbjct: 961 ALTEPLWDVATSQYSYSSNAVFVREFTIKLLSTSFPNMTSAEVTQFVNGLFESTNDLSTF 1020
Query: 1005 KNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
KNHIRDFL+QSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAP+E+QDEMVDS
Sbjct: 1021 KNHIRDFLIQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMVDS 1077
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538463|ref|XP_003537723.1| PREDICTED: exportin-1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1994 bits (5166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1077 (88%), Positives = 1015/1077 (94%), Gaps = 16/1077 (1%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DV LLDATVAAFYGTGSKEER AADQILR+LQNNPDMWLQV+HILQ
Sbjct: 1 MAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEERNAADQILRELQNNPDMWLQVMHILQK 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
++NLNTKFFALQVLEGVIKYRWNALPVEQRDGMKN+IS+VIVQLSSN+ASFR ERLYVNK
Sbjct: 61 TQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSSNDASFRAERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LNIILVQILKHEWPARWRSFIPDLV+AAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQRT+LIRATLSTLHAFLSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+P+YRNLTLQCLTEV AL FG++Y+VQYV MYN+FMVQLQ +LPPTTNIPEAYA
Sbjct: 241 LLKFFPVPAYRNLTLQCLTEVAALQFGNYYDVQYVKMYNIFMVQLQGMLPPTTNIPEAYA 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
G+ +EQAFIQNLALFFTSF+K HIR+LESTQENI+ALL+GLEYL NISYVD+TEVFKVC
Sbjct: 301 QGSGDEQAFIQNLALFFTSFYKVHIRILESTQENIAALLLGLEYLTNISYVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMP-LLPSVVDGIGAQLLQRRQLYAVPLSK 419
LDYWNS V ELF+ H +L+NPA +A MMGL +P +LP +VDG G+QLLQRRQLYA P+SK
Sbjct: 361 LDYWNSLVSELFEPHRSLDNPAASATMMGLQVPAMLPGMVDGHGSQLLQRRQLYAGPMSK 420
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQ 479
LRMLMICRMAKPEEVLIVEDENGNIVRET+KDNDVLVQYKIMRETLIYLSHLDH+DTEKQ
Sbjct: 421 LRMLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTEKQ 480
Query: 480 MLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
ML+KLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE+TKGKD
Sbjct: 481 MLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKD 540
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC
Sbjct: 541 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 600
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
KRKFVI QVGENEPFVSELL+GL T+ADLEPHQIH+FYESVGHMIQAESD QKR+EYLQ
Sbjct: 601 KRKFVITQVGENEPFVSELLTGLPITIADLEPHQIHSFYESVGHMIQAESDAQKRDEYLQ 660
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
RLM LPNQKW EII QA Q+VDFLKDQDVIRTVLNILQTNTSVA++LGT+FL QIS+IFL
Sbjct: 661 RLMELPNQKWMEIIGQAHQNVDFLKDQDVIRTVLNILQTNTSVATSLGTYFLPQISLIFL 720
Query: 720 DMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ 779
DMLNVY+MYSELIS SI+ GGPFAS+TSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ
Sbjct: 721 DMLNVYRMYSELISKSITEGGPFASRTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ 780
Query: 780 ---------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
NVPDARESEVLSLFATI+NKYK AMI+DVPRIFEA+FQCTLEMIT
Sbjct: 781 FVPPMMDPVLGDYARNVPDARESEVLSLFATIVNKYKAAMIEDVPRIFEAVFQCTLEMIT 840
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
+NFEDYPEHRLKFFSLLRAIATHCFPALI LSSQQLKLVMDSIIWAFRHTERNIAETGLN
Sbjct: 841 RNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLN 900
Query: 885 LLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG 944
LLLEMLK FQ SEFCNQFYRTYF+TIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCL+E+G
Sbjct: 901 LLLEMLKKFQGSEFCNQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLLETG 960
Query: 945 LLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTF 1004
LTEPLWD AT Y Y +NA+FVRE+TIKLL TSFPNMT+AEVTQFV+GL ES NDLSTF
Sbjct: 961 ALTEPLWDVATSQYSYSSNAVFVREFTIKLLSTSFPNMTSAEVTQFVNGLFESTNDLSTF 1020
Query: 1005 KNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
KNHIRDFL+QSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAP+E+QDEMVDS
Sbjct: 1021 KNHIRDFLIQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMVDS 1077
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807725|ref|XP_002871746.1| hypothetical protein ARALYDRAFT_909689 [Arabidopsis lyrata subsp. lyrata] gi|297317583|gb|EFH48005.1| hypothetical protein ARALYDRAFT_909689 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1966 bits (5093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 939/1076 (87%), Positives = 1005/1076 (93%), Gaps = 15/1076 (1%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DV +LDATVAAF+ TGSKEER AADQILRDLQ NPDMWLQVVHILQN
Sbjct: 1 MAAEKLRDLSQPIDVGVLDATVAAFFVTGSKEERAAADQILRDLQANPDMWLQVVHILQN 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
+K+++TKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 61 TKSMDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRSERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQI+KH+WPA+W SFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMT Q
Sbjct: 121 LNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTLQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEF+LIHELCLYVLSASQR DLIRATLS LHA+LSWIPLGYIFESPLLET
Sbjct: 181 KIKELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESPLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+P+YRNLTLQCLTEV ALNFGDFYNVQYVNMY +F+ QL+ ILPP+TNIPEAY+
Sbjct: 241 LLKFFPVPAYRNLTLQCLTEVAALNFGDFYNVQYVNMYTIFIGQLRAILPPSTNIPEAYS 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
G+ EEQAFIQNLALFFTSFFKFHIRVLES E ++ LL GLEYLINISYVD+TEVFKVC
Sbjct: 301 SGSGEEQAFIQNLALFFTSFFKFHIRVLESAPEVVALLLAGLEYLINISYVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELFDAH+N +NPAV+A++MGL MP LP +VDG+G+Q++QRRQLY+ P+SKL
Sbjct: 361 LDYWNSLVLELFDAHHNSDNPAVSASLMGLQMPFLPGMVDGLGSQVMQRRQLYSNPMSKL 420
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
R LMI RMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDH+DTEKQM
Sbjct: 421 RGLMINRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHDDTEKQM 480
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
L+KL+KQLSGE+W WNNLNTLCWAIGSISGSM E+QENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 481 LRKLNKQLSGEEWAWNNLNTLCWAIGSISGSMAEDQENRFLVMVIRDLLNLCEITKGKDN 540
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVIVQVGENEPFVSELLSGLATTV DLEPHQIH+FYESVG+MIQAE D QKR+EYLQR
Sbjct: 601 RKFVIVQVGENEPFVSELLSGLATTVQDLEPHQIHSFYESVGNMIQAEPDPQKRDEYLQR 660
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QARQSV+FLKD VIRTVLNILQTNTS A++LGT+FLSQIS+IFLD
Sbjct: 661 LMALPNQKWAEIIGQARQSVEFLKDPGVIRTVLNILQTNTSAATSLGTYFLSQISLIFLD 720
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSEL+S++I+ GGP+ASKTS+VKLLRSVKRETLKLIETFLDKAEDQP IGKQ
Sbjct: 721 MLNVYRMYSELVSTNITEGGPYASKTSFVKLLRSVKRETLKLIETFLDKAEDQPHIGKQF 780
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
NVPDARESEVLSLFATIINKYK M++DVP IFEA+FQCTLEMITK
Sbjct: 781 VPPMMESVLGDYARNVPDARESEVLSLFATIINKYKATMLEDVPHIFEAVFQCTLEMITK 840
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIAT CFPALI+LSS QLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 841 NFEDYPEHRLKFFSLLRAIATFCFPALIKLSSPQLKLVMDSIIWAFRHTERNIAETGLNL 900
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQ SEFCNQFYRTYF+ IEQEIFAVLTDTFHKPGFKLHVLVLQ LFCL ESG
Sbjct: 901 LLEMLKNFQQSEFCNQFYRTYFMQIEQEIFAVLTDTFHKPGFKLHVLVLQQLFCLPESGA 960
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
LTEPLWDA T+PYPYPNNA FVREYTIKLL +SFPNMTAAEVTQFVDGL ESRND S FK
Sbjct: 961 LTEPLWDATTVPYPYPNNAAFVREYTIKLLSSSFPNMTAAEVTQFVDGLYESRNDPSGFK 1020
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1061
N+IRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS
Sbjct: 1021 NNIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1076
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1061 | ||||||
| TAIR|locus:2148216 | 1075 | XPO1A "AT5G17020" [Arabidopsis | 0.999 | 0.986 | 0.842 | 0.0 | |
| TAIR|locus:2097750 | 1076 | XPO1B "AT3G03110" [Arabidopsis | 1.0 | 0.986 | 0.797 | 0.0 | |
| UNIPROTKB|E1BE98 | 1071 | XPO1 "Uncharacterized protein" | 0.978 | 0.969 | 0.486 | 4.9e-275 | |
| UNIPROTKB|E2R9K4 | 1071 | XPO1 "Uncharacterized protein" | 0.978 | 0.969 | 0.486 | 4.9e-275 | |
| MGI|MGI:2144013 | 1071 | Xpo1 "exportin 1, CRM1 homolog | 0.978 | 0.969 | 0.486 | 4.9e-275 | |
| RGD|620517 | 1071 | Xpo1 "exportin 1, CRM1 homolog | 0.978 | 0.969 | 0.485 | 8e-275 | |
| UNIPROTKB|F1NVE5 | 1071 | XPO1 "Uncharacterized protein" | 0.978 | 0.969 | 0.485 | 1e-274 | |
| UNIPROTKB|Q9PW90 | 1071 | Q9PW90 "CRM1/XPO1 protein" [Xe | 0.978 | 0.969 | 0.484 | 9.1e-274 | |
| UNIPROTKB|O14980 | 1071 | XPO1 "Exportin-1" [Homo sapien | 0.978 | 0.969 | 0.483 | 1.3e-272 | |
| ZFIN|ZDB-GENE-070530-6 | 1074 | xpo1b "exportin 1 (CRM1 homolo | 0.976 | 0.964 | 0.480 | 5.9e-263 |
| TAIR|locus:2148216 XPO1A "AT5G17020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4644 (1639.8 bits), Expect = 0., P = 0.
Identities = 906/1076 (84%), Positives = 968/1076 (89%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DV +LDATVAAF+ TGSKEER AADQILRDLQ NPDMWLQVVHILQN
Sbjct: 1 MAAEKLRDLSQPIDVGVLDATVAAFFVTGSKEERAAADQILRDLQANPDMWLQVVHILQN 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
+ +L+TKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFR ERLYVNK
Sbjct: 61 TNSLDTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFRSERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQI+KH+WPA+W SFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ
Sbjct: 121 LNVILVQIVKHDWPAKWTSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEF+LIHELCLYVLSASQR DLIRATLS LHA+LSWIPLGYIFES LLET
Sbjct: 181 KIKELKQSLNSEFKLIHELCLYVLSASQRQDLIRATLSALHAYLSWIPLGYIFESTLLET 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+P+YRNLT+QCLTEV ALNFGDFYNVQYV MY +F+ QL+ ILPP+T IPEAY+
Sbjct: 241 LLKFFPVPAYRNLTIQCLTEVAALNFGDFYNVQYVKMYTIFIGQLRIILPPSTKIPEAYS 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
G+ EEQAFIQNLALFFTSFFKFHIRVLEST E +S LL GLEYLINISYVD+TEVFKVC
Sbjct: 301 SGSGEEQAFIQNLALFFTSFFKFHIRVLESTPEVVSLLLAGLEYLINISYVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELFDAH+N +NPAV+A++MGL P LP +VDG+G+Q++QRRQLY+ P+SKL
Sbjct: 361 LDYWNSLVLELFDAHHNSDNPAVSASLMGL-QPFLPGMVDGLGSQVMQRRQLYSHPMSKL 419
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXXX 480
R LMI RMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDH+DTE
Sbjct: 420 RGLMINRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHDDTEKQM 479
Query: 481 XXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
GE+W WNNLNTLCWAIGSISGSM E+QENRFLVMVIRDLLNLCE+TKGKDN
Sbjct: 480 LRKLNKQLSGEEWAWNNLNTLCWAIGSISGSMAEDQENRFLVMVIRDLLNLCEITKGKDN 539
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 540 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 599
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVIVQVGENEPFVSELL+GLATTV DLEPHQIH+FYESVG+MIQAESD QKR+EYLQR
Sbjct: 600 RKFVIVQVGENEPFVSELLTGLATTVQDLEPHQIHSFYESVGNMIQAESDPQKRDEYLQR 659
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QAR SV+FLKDQ VIRTVLNILQTNTS A++LGT+FLSQIS+IFLD
Sbjct: 660 LMALPNQKWAEIIGQARHSVEFLKDQVVIRTVLNILQTNTSAATSLGTYFLSQISLIFLD 719
Query: 721 MLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSEL P+ASKTS+VKLLRSVKRETLKLIETFLDKAEDQP IGKQ
Sbjct: 720 MLNVYRMYSELVSTNITEGGPYASKTSFVKLLRSVKRETLKLIETFLDKAEDQPHIGKQF 779
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
NVPDARESEVLSLFATIINKYK M+DDVP IFEA+FQCTLEMITK
Sbjct: 780 VPPMMESVLGDYARNVPDARESEVLSLFATIINKYKATMLDDVPHIFEAVFQCTLEMITK 839
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIAT CFPALI+LSS QLKLVMDSIIWAFRHTERNIAETGLNL
Sbjct: 840 NFEDYPEHRLKFFSLLRAIATFCFPALIKLSSPQLKLVMDSIIWAFRHTERNIAETGLNL 899
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQ SEFCNQFYR+YF+ IEQEIFAVLTDTFHKPGFKLHVLVLQ LFCL ESG
Sbjct: 900 LLEMLKNFQQSEFCNQFYRSYFMQIEQEIFAVLTDTFHKPGFKLHVLVLQQLFCLPESGA 959
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
LTEPLWDA T+PYPYP+N FVREYTIKLL +SFPNMTAAEVTQFV+GL ESRND S FK
Sbjct: 960 LTEPLWDATTVPYPYPDNVAFVREYTIKLLSSSFPNMTAAEVTQFVNGLYESRNDPSGFK 1019
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXXMLSIPGLIAPNEIQDEMVDS 1061
N+IRDFLVQSKEFSAQDNKDLY MLSIPGLIAPNEIQDEMVDS
Sbjct: 1020 NNIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1075
|
|
| TAIR|locus:2097750 XPO1B "AT3G03110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4392 (1551.1 bits), Expect = 0., P = 0.
Identities = 858/1076 (79%), Positives = 937/1076 (87%)
Query: 1 MAAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
MAAEKLRDLSQP+DV LLDATV AFY TGSKEER +AD ILRDL+ NPD WLQVVHILQN
Sbjct: 1 MAAEKLRDLSQPIDVVLLDATVEAFYSTGSKEERASADNILRDLKANPDTWLQVVHILQN 60
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
+ + +TKFFALQVLEGVIKYRWNALPVEQRDGMKNYIS+VIVQLS +EASFR ERLYVNK
Sbjct: 61 TSSTHTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISDVIVQLSRDEASFRTERLYVNK 120
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LNIILVQI+K EWPA+W+SFIPDLV AAKTSETICENCMAILKLLSEEVFDFS+GEMTQQ
Sbjct: 121 LNIILVQIVKQEWPAKWKSFIPDLVIAAKTSETICENCMAILKLLSEEVFDFSKGEMTQQ 180
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
KIKELKQSLNSEFQLIHELCLYVLSASQR +LIRATLS LHA+LSWIPLGYIFESPLLE
Sbjct: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRQELIRATLSALHAYLSWIPLGYIFESPLLEI 240
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
LLKFFP+P+YRNLTLQCL+EV +LNFGDFY++QYV MY++FM QLQ ILP NIPEAY+
Sbjct: 241 LLKFFPVPAYRNLTLQCLSEVASLNFGDFYDMQYVKMYSIFMNQLQAILPLNLNIPEAYS 300
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
G+SEEQAFIQNLALFFTSFFK HI++LES ENIS LL GL YLI+ISYVD+TEVFKVC
Sbjct: 301 TGSSEEQAFIQNLALFFTSFFKLHIKILESAPENISLLLAGLGYLISISYVDDTEVFKVC 360
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
LDYWNS VLELF ++ +PA+T ++ GL M LPS VDG+ +++ +R++LY+ P+SKL
Sbjct: 361 LDYWNSLVLELFGTRHHACHPALTPSLFGLQMAFLPSTVDGVKSEVTERQKLYSDPMSKL 420
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXXX 480
R LMI R AKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE
Sbjct: 421 RGLMISRTAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
Query: 481 XXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
GE+W WNNLNTLCWAIGSISGSM+ EQENRFLVMVIRDLL+LCE+ KGKDN
Sbjct: 481 LSKLSKQLSGEEWAWNNLNTLCWAIGSISGSMVVEQENRFLVMVIRDLLSLCEVVKGKDN 540
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KAVIASNIMYVVGQY RFLRAHWKFLKTVV+KLFEFMHETHPGVQDMACDTFLKIVQKCK
Sbjct: 541 KAVIASNIMYVVGQYSRFLRAHWKFLKTVVHKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
RKFVIVQVGE+EPFVSELLSGLAT V DL+PHQIHTFYESVG MIQAESD QKR EYLQR
Sbjct: 601 RKFVIVQVGESEPFVSELLSGLATIVGDLQPHQIHTFYESVGSMIQAESDPQKRGEYLQR 660
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
LM LPNQKW+EII QARQS D LK+ DVIRTVLNILQTNT VA++LGTFFLSQIS+IFLD
Sbjct: 661 LMALPNQKWAEIIGQARQSADILKEPDVIRTVLNILQTNTRVATSLGTFFLSQISLIFLD 720
Query: 721 MLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ- 779
MLNVY+MYSEL P+AS+TS VKLLRSVKRE LKLIETFLDKAE+QP IGKQ
Sbjct: 721 MLNVYRMYSELVSSSIANGGPYASRTSLVKLLRSVKREILKLIETFLDKAENQPHIGKQF 780
Query: 780 --------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
NVPDARESEVLSLFATIINKYK M D+VP IFEA+FQCTLEMITK
Sbjct: 781 VPPMMDQVLGDYARNVPDARESEVLSLFATIINKYKVVMRDEVPLIFEAVFQCTLEMITK 840
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
NFEDYPEHRLKFFSLLRAIAT CF ALI+LSS+QLKLVMDS+IWAFRHTERNIAETGLNL
Sbjct: 841 NFEDYPEHRLKFFSLLRAIATFCFRALIQLSSEQLKLVMDSVIWAFRHTERNIAETGLNL 900
Query: 886 LLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945
LLEMLKNFQ S+FCN+FY+TYF+ IEQE+FAVLTDTFHKPGFKLHVLVLQHLF LVESG
Sbjct: 901 LLEMLKNFQKSDFCNKFYQTYFLQIEQEVFAVLTDTFHKPGFKLHVLVLQHLFSLVESGS 960
Query: 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFK 1005
L EPLWDAAT+P+PY NN FV EYT KLL +SFPNMT EVTQFV+GL ESRND+ FK
Sbjct: 961 LAEPLWDAATVPHPYSNNVAFVLEYTTKLLSSSFPNMTTTEVTQFVNGLYESRNDVGRFK 1020
Query: 1006 NHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXXMLSIPGLIAPNEIQDEMVDS 1061
++IRDFL+QSKEFSAQDNKDLY MLSIPGLIAP+EIQD+M DS
Sbjct: 1021 DNIRDFLIQSKEFSAQDNKDLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 1076
|
|
| UNIPROTKB|E1BE98 XPO1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2644 (935.8 bits), Expect = 4.9e-275, P = 4.9e-275
Identities = 526/1081 (48%), Positives = 718/1081 (66%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
AA +L D SQ +D+ LLD V Y G G+++ A ++L L+ +PD W +V IL+
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEF 69
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
S+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ K
Sbjct: 70 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGK 129
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ
Sbjct: 130 LNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQV 189
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
K K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ T
Sbjct: 190 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIST 249
Query: 241 LL-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299
L+ KF +P +RN++L+CLTE+ ++ Y Q+V ++ + M+QL+ +LP TNI AY
Sbjct: 250 LIYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFVTLFTLTMMQLKQMLPLNTNIRLAY 308
Query: 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKV 359
++G +EQ FIQNL+LF +F K H +++E L+ L Y++ +S V+ETE+FK+
Sbjct: 309 SNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEVEETEIFKI 368
Query: 360 CLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSK 419
CL+YWN EL+ E+P T+ PLL + RRQLY LSK
Sbjct: 369 CLEYWNHLAAELYR-----ESPFSTS-----ASPLLSGSQH---FDVPPRRQLYLPVLSK 415
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXX 479
+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 416 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTERI 475
Query: 480 XXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +GKD
Sbjct: 476 MTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD 535
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC
Sbjct: 536 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 595
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E ++
Sbjct: 596 RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 655
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
+ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I+L
Sbjct: 656 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 715
Query: 720 DMLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK- 778
DMLNVYK SE +K ++ +R+VKRETLKLI ++ ++ D + +
Sbjct: 716 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 775
Query: 779 --------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
+NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL MI
Sbjct: 776 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMIN 835
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TGL
Sbjct: 836 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQ 895
Query: 885 LLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVES 943
+L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LVE
Sbjct: 896 ILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 955
Query: 944 GLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLST 1003
G ++ PL + NN MF++EY LL ++FP++ A+V FV GL D+
Sbjct: 956 GKISTPLNPGNPV-----NNQMFIQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPA 1010
Query: 1004 FKNHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXX----MLSIPGLIAPNEIQDEMV 1059
FK H+RDFLVQ KEF+ +D DL+ +S+PG++ P+EI +EM
Sbjct: 1011 FKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMC 1070
Query: 1060 D 1060
D
Sbjct: 1071 D 1071
|
|
| UNIPROTKB|E2R9K4 XPO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2644 (935.8 bits), Expect = 4.9e-275, P = 4.9e-275
Identities = 526/1081 (48%), Positives = 718/1081 (66%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
AA +L D SQ +D+ LLD V Y G G+++ A ++L L+ +PD W +V IL+
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEF 69
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
S+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ K
Sbjct: 70 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGK 129
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ
Sbjct: 130 LNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQV 189
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
K K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ T
Sbjct: 190 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIST 249
Query: 241 LL-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299
L+ KF +P +RN++L+CLTE+ ++ Y Q+V ++ + M+QL+ +LP TNI AY
Sbjct: 250 LIYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFVTLFTLTMMQLKQMLPLNTNIRLAY 308
Query: 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKV 359
++G +EQ FIQNL+LF +F K H +++E L+ L Y++ +S V+ETE+FK+
Sbjct: 309 SNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEVEETEIFKI 368
Query: 360 CLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSK 419
CL+YWN EL+ E+P T+ PLL + RRQLY LSK
Sbjct: 369 CLEYWNHLAAELYR-----ESPFSTS-----ASPLLSGSQH---FDVPPRRQLYLPVLSK 415
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXX 479
+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 416 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTERI 475
Query: 480 XXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +GKD
Sbjct: 476 MTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD 535
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC
Sbjct: 536 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 595
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E ++
Sbjct: 596 RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 655
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
+ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I+L
Sbjct: 656 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 715
Query: 720 DMLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK- 778
DMLNVYK SE +K ++ +R+VKRETLKLI ++ ++ D + +
Sbjct: 716 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 775
Query: 779 --------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
+NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL MI
Sbjct: 776 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMIN 835
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TGL
Sbjct: 836 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQ 895
Query: 885 LLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVES 943
+L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LVE
Sbjct: 896 ILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 955
Query: 944 GLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLST 1003
G ++ PL + NN MF++EY LL ++FP++ A+V FV GL D+
Sbjct: 956 GKISTPLNPGNPV-----NNQMFIQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPA 1010
Query: 1004 FKNHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXX----MLSIPGLIAPNEIQDEMV 1059
FK H+RDFLVQ KEF+ +D DL+ +S+PG++ P+EI +EM
Sbjct: 1011 FKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMC 1070
Query: 1060 D 1060
D
Sbjct: 1071 D 1071
|
|
| MGI|MGI:2144013 Xpo1 "exportin 1, CRM1 homolog (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2644 (935.8 bits), Expect = 4.9e-275, P = 4.9e-275
Identities = 526/1081 (48%), Positives = 718/1081 (66%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
AA +L D SQ +D+ LLD V Y G G+++ A ++L L+ +PD W +V IL+
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEF 69
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
S+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ K
Sbjct: 70 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGK 129
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ
Sbjct: 130 LNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQV 189
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
K K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ T
Sbjct: 190 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIST 249
Query: 241 LL-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299
L+ KF +P +RN++L+CLTE+ ++ Y Q+ ++ + M+QL+ +LP TNI AY
Sbjct: 250 LIYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAY 308
Query: 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKV 359
++G +EQ FIQNL+LF +F K H ++LE AL+ L Y++ +S V+ETE+FK+
Sbjct: 309 SNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKI 368
Query: 360 CLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSK 419
CL+YWN EL+ E+P T+ PLL + RRQLY LSK
Sbjct: 369 CLEYWNHLAAELYR-----ESPFSTS-----ASPLLSGSQH---FDIPPRRQLYLTVLSK 415
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXX 479
+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 416 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII 475
Query: 480 XXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +GKD
Sbjct: 476 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD 535
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC
Sbjct: 536 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 595
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E ++
Sbjct: 596 RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 655
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
+ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I+L
Sbjct: 656 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 715
Query: 720 DMLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK- 778
DMLNVYK SE +K ++ +R+VKRETLKLI ++ ++ D + +
Sbjct: 716 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 775
Query: 779 --------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
+NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL MI
Sbjct: 776 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMIN 835
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TGL
Sbjct: 836 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQ 895
Query: 885 LLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVES 943
+L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LVE
Sbjct: 896 ILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 955
Query: 944 GLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLST 1003
G ++ PL + NN MF+++Y LL ++FP++ A+V FV GL D+
Sbjct: 956 GKISTPLNPGNPV-----NNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPA 1010
Query: 1004 FKNHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXX----MLSIPGLIAPNEIQDEMV 1059
FK H+RDFLVQ KEF+ +D DL+ +S+PG++ P+EI +EM
Sbjct: 1011 FKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMC 1070
Query: 1060 D 1060
D
Sbjct: 1071 D 1071
|
|
| RGD|620517 Xpo1 "exportin 1, CRM1 homolog (yeast)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2642 (935.1 bits), Expect = 8.0e-275, P = 8.0e-275
Identities = 525/1081 (48%), Positives = 719/1081 (66%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
AA +L D SQ +D+ LLD V Y G G+++ A ++L L+ +PD W +V IL+
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEF 69
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
S+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ K
Sbjct: 70 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGK 129
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ
Sbjct: 130 LNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQV 189
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
K K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ T
Sbjct: 190 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIST 249
Query: 241 LL-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299
L+ KF +P +RN++L+CLTE+ ++ Y Q+ ++ + M+QL+ +LP TNI AY
Sbjct: 250 LIYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAY 308
Query: 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKV 359
++G +EQ FIQNL+LF +F K H ++LE AL+ L Y++ +S V+ETE+FK+
Sbjct: 309 SNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKI 368
Query: 360 CLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSK 419
CL+YWN EL+ E+P T+ PLL + RRQLY LSK
Sbjct: 369 CLEYWNHLAAELYR-----ESPFSTS-----ASPLLSGSQH---FDIPPRRQLYLTVLSK 415
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXX 479
+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 416 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII 475
Query: 480 XXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +GKD
Sbjct: 476 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD 535
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC
Sbjct: 536 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 595
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E ++
Sbjct: 596 RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 655
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
+ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I+L
Sbjct: 656 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 715
Query: 720 DMLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK- 778
DMLNVYK SE +K ++ +R+VKRETLKLI ++ ++ D + +
Sbjct: 716 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 775
Query: 779 --------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
+NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL MI
Sbjct: 776 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMIN 835
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TGL
Sbjct: 836 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQ 895
Query: 885 LLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVES 943
+L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LVE
Sbjct: 896 ILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 955
Query: 944 GLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLST 1003
G ++ PL + + +N MF+++Y LL ++FP++ A+V FV GL D+
Sbjct: 956 GKISTPLNPGSPV-----SNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPA 1010
Query: 1004 FKNHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXX----MLSIPGLIAPNEIQDEMV 1059
FK H+RDFLVQ KEF+ +D DL+ +S+PG++ P+EI +EM
Sbjct: 1011 FKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMC 1070
Query: 1060 D 1060
D
Sbjct: 1071 D 1071
|
|
| UNIPROTKB|F1NVE5 XPO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2641 (934.7 bits), Expect = 1.0e-274, P = 1.0e-274
Identities = 525/1081 (48%), Positives = 718/1081 (66%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
AA +L D +Q +D+ LLD V Y G G+++ A ++L L+ +PD W +V IL+
Sbjct: 12 AARQLLDFNQKLDINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEF 69
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
S+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ K
Sbjct: 70 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGK 129
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ
Sbjct: 130 LNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQV 189
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
K K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ T
Sbjct: 190 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIST 249
Query: 241 LL-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299
L+ KF +P +RN++L+CLTE+ ++ Y Q+V ++ + M+QL+ +LP TNI AY
Sbjct: 250 LIYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFVTLFTLTMMQLKQMLPLNTNIRLAY 308
Query: 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKV 359
++G +EQ FIQNL+LF +F K H +++E L+ L Y++ +S V+ETE+FK+
Sbjct: 309 SNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEVEETEIFKI 368
Query: 360 CLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSK 419
CL+YWN EL+ E+P T+ PLL + RRQLY LSK
Sbjct: 369 CLEYWNHLAAELYR-----ESPFSTS-----ASPLLSGSQH---FDVPPRRQLYLPVLSK 415
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXX 479
+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 416 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERI 475
Query: 480 XXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +GKD
Sbjct: 476 MTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD 535
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC
Sbjct: 536 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 595
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E ++
Sbjct: 596 RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 655
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
+ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I+L
Sbjct: 656 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 715
Query: 720 DMLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK- 778
DMLNVYK SE +K ++ +R+VKRETLKLI ++ ++ D + +
Sbjct: 716 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 775
Query: 779 --------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
+NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL MI
Sbjct: 776 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMIN 835
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TGL
Sbjct: 836 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQ 895
Query: 885 LLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVES 943
+L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LVE
Sbjct: 896 ILYTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 955
Query: 944 GLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLST 1003
G ++ PL + NN MF++EY LL ++FP++ A+V FV GL D+
Sbjct: 956 GKISTPLNPGNPV-----NNQMFIQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPA 1010
Query: 1004 FKNHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXX----MLSIPGLIAPNEIQDEMV 1059
FK H+RDFLVQ KEF+ +D DL+ +S+PG++ P+EI +EM
Sbjct: 1011 FKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMC 1070
Query: 1060 D 1060
D
Sbjct: 1071 D 1071
|
|
| UNIPROTKB|Q9PW90 Q9PW90 "CRM1/XPO1 protein" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 2632 (931.6 bits), Expect = 9.1e-274, P = 9.1e-274
Identities = 524/1081 (48%), Positives = 718/1081 (66%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
AA +L D SQ +D+ LLD V Y G G+++ A ++L L+ +PD W +V IL+
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEF 69
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
S+N+NTK++ LQ+LE VIK RW LP Q DG+K Y+ +I++ SS+ +E++Y+ K
Sbjct: 70 SQNMNTKYYGLQILENVIKTRWKILPRNQCDGIKKYVVGLIIKTSSDATCVEKEKVYIGK 129
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQILK EWP W +FI D+V A++TSE++C+N M ILK LSEEVFDFS G++TQ
Sbjct: 130 LNMILVQILKQEWPKYWPTFISDIVGASRTSESLCQNNMVILKPLSEEVFDFSTGQITQV 189
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
K K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ T
Sbjct: 190 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAQLVHATLETLLRFLNWIPLGYIFETKLIST 249
Query: 241 LL-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299
L+ KF +P +RN++L+CLTE+ ++ Y Q+V ++ + M+QL+ +LP TNI AY
Sbjct: 250 LVYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFVTLFTLTMMQLKQMLPLNTNIRLAY 308
Query: 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKV 359
++G +EQ FIQNL+LF +F K H +++E L+ L Y++ +S V+ETE+FK+
Sbjct: 309 SNGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEVEETEIFKI 368
Query: 360 CLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSK 419
CL+YWN EL+ E+P T+ PLL + RRQLY LSK
Sbjct: 369 CLEYWNHLAAELYR-----ESPFSTS-----ASPLLSGSQH---FDVPPRRQLYLPVLSK 415
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXX 479
+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 416 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERI 475
Query: 480 XXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +GKD
Sbjct: 476 MTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD 535
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC
Sbjct: 536 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 595
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E ++
Sbjct: 596 RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 655
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
+ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I+L
Sbjct: 656 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 715
Query: 720 DMLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK- 778
DMLNVYK SE +K ++ +R+VKRETLKLI ++ ++ D + +
Sbjct: 716 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSSDPQMVAEN 775
Query: 779 --------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
+NVP ARE EVLS ATI+NK + ++P+IF+A+F+CTL MI
Sbjct: 776 FVPPLLDAVLIDYQRNVPAAREPEVLSTMATIVNKLGVHITAEIPQIFDAVFECTLNMIN 835
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TGL
Sbjct: 836 KDFEEYPEHRTHFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQ 895
Query: 885 LLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVES 943
+L +L+N E Q FY+TYF I Q F+V+TDT H G +H +L ++F LVE
Sbjct: 896 ILYTLLQNVAQEEAAAQSFYQTYFCDILQHTFSVVTDTSHTAGLTMHASILAYMFNLVEE 955
Query: 944 GLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLST 1003
G + PL A+ + NN +F++EY LL ++FP++ A+V FV GL D++
Sbjct: 956 GKINTPLNQASPL-----NNQLFIQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIAA 1010
Query: 1004 FKNHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXX----MLSIPGLIAPNEIQDEMV 1059
FK H+RDFLVQ KE++ +D DL+ +S+PG++ P+EI +EM
Sbjct: 1011 FKEHLRDFLVQIKEYAGEDTSDLFLEERESSLRQAQEEKHKLQMSVPGILNPHEIPEEMC 1070
Query: 1060 D 1060
D
Sbjct: 1071 D 1071
|
|
| UNIPROTKB|O14980 XPO1 "Exportin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2621 (927.7 bits), Expect = 1.3e-272, P = 1.3e-272
Identities = 523/1081 (48%), Positives = 715/1081 (66%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
AA +L D SQ +D+ LLD V Y G G+++ A ++L L+ +PD W +V IL+
Sbjct: 12 AARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRM--AQEVLTHLKEHPDAWTRVDTILEF 69
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNK 120
S+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ K
Sbjct: 70 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGK 129
Query: 121 LNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQ 180
LN+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ
Sbjct: 130 LNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQV 189
Query: 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
K K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ T
Sbjct: 190 KSKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIST 249
Query: 241 LL-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299
L+ KF +P +RN++L+CLTE+ ++ Y Q+V ++ + M+QL+ +LP TNI AY
Sbjct: 250 LIYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFVTLFTLTMMQLKQMLPLNTNIRLAY 308
Query: 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKV 359
++G +EQ FIQNL+LF +F K H +++E L+ L Y++ +S V+ETE+FK+
Sbjct: 309 SNGKDDEQNFIQNLSLFLCTFLKEHDQLIEKRLNLRETLMEALHYMLLVSEVEETEIFKI 368
Query: 360 CLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSK 419
CL+YWN EL+ E+P T+ PLL + RRQLY L K
Sbjct: 369 CLEYWNHLAAELYR-----ESPFSTS-----ASPLLSGSQH---FDVPPRRQLYLPMLFK 415
Query: 420 LRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEXX 479
+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 416 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTERI 475
Query: 480 XXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKD 539
G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +GKD
Sbjct: 476 MTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKD 535
Query: 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599
NKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC
Sbjct: 536 NKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC 595
Query: 600 KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQ 659
+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E ++
Sbjct: 596 RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 655
Query: 660 RLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719
+ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I+L
Sbjct: 656 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 715
Query: 720 DMLNVYKMYSELXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK- 778
DMLNVYK SE +K ++ +R+VKRETLKLI ++ ++ D + +
Sbjct: 716 DMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAEN 775
Query: 779 --------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
+NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL MI
Sbjct: 776 FVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMIN 835
Query: 825 KNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884
K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TGL
Sbjct: 836 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQ 895
Query: 885 LLLEMLKNFQASEFCNQ-FYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVES 943
+L +L+N E Q FY+TYF I Q IF+V+TDT H G +H +L ++F LVE
Sbjct: 896 ILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 955
Query: 944 GLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLST 1003
G ++ L + NN +F++EY LL ++FP++ A+V FV GL D+
Sbjct: 956 GKISTSLNPGNPV-----NNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPA 1010
Query: 1004 FKNHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXX----MLSIPGLIAPNEIQDEMV 1059
FK H+RDFLVQ KEF+ +D DL+ +S+PG+ P+EI +EM
Sbjct: 1011 FKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEEMC 1070
Query: 1060 D 1060
D
Sbjct: 1071 D 1071
|
|
| ZFIN|ZDB-GENE-070530-6 xpo1b "exportin 1 (CRM1 homolog, yeast) b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2530 (895.7 bits), Expect = 5.9e-263, P = 5.9e-263
Identities = 522/1086 (48%), Positives = 708/1086 (65%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFY-GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN 60
AA +L D +Q +D+ LLD V Y G G ++ A ++L L+ +PD W +V IL+
Sbjct: 12 AARQLLDFNQKLDINLLDNVVNCLYHGVGPQQRM--AQEVLTHLKEHPDAWTRVDTILEF 69
Query: 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRD-GMKNYISEVIVQLSSNEASFREERLYVN 119
S+N+NTK++ALQ+LE VIK RW LP Q + G+K Y+ +I++ SS+ A+ +E++Y+
Sbjct: 70 SQNMNTKYYALQILETVIKTRWKILPRNQCEAGIKKYVVGLIIKTSSDAANVEKEKVYIG 129
Query: 120 KLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQ 179
KLN+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G+MTQ
Sbjct: 130 KLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFDFSSGQMTQ 189
Query: 180 QKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLE 239
K K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+
Sbjct: 190 VKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLIS 249
Query: 240 TLL-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQL-QTILPPTTNIPE 297
TL+ KF +P +RN+TL+CLTE+ ++ Y Q+VN++ + M+QL Q +LP TNI
Sbjct: 250 TLVYKFLNVPMFRNVTLKCLTEIAGVSVSQ-YEEQFVNLFTLTMMQLKQKMLPLNTNIRL 308
Query: 298 AYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVF 357
AYA+G +EQ FIQNL+LF +F K H +++E L+ L Y++ +S V+ETE+F
Sbjct: 309 AYANGKDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEVEETEIF 368
Query: 358 KVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPL 417
K+CL+YWN EL+ E+P T+ PLL + RRQLY L
Sbjct: 369 KICLEYWNHLAAELYR-----ESPFSTSTS-----PLLSGSQH---FDVPPRRQLYLPVL 415
Query: 418 SKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 477
SK+R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE
Sbjct: 416 SKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTE 475
Query: 478 XXXXXXXXXXXXGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKG 537
G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +G
Sbjct: 476 RIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRG 535
Query: 538 KDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597
KDNKA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI Q
Sbjct: 536 KDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595
Query: 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657
KC+R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E
Sbjct: 596 KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQEHL 655
Query: 658 LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717
+++ MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I
Sbjct: 656 IEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRI 715
Query: 718 FLDMLNVYKMYSE-LXXXXXXXXXPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQI 776
+LDMLNVYK SE + +K ++ +R+VKRETLKLI ++ ++ D +
Sbjct: 716 YLDMLNVYKCLSENISAAIQTNVGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMV 775
Query: 777 GK---------------QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLE 821
G+ +NVP ARE EVLS ATI+NK G + ++P+IF+A+F+CTL
Sbjct: 776 GENFVPPLLDAVLIDYQRNVPAAREPEVLSTMATIVNKLGGHITGEIPQIFDAVFECTLN 835
Query: 822 MITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAET 881
MI K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+T
Sbjct: 836 MINKDFEEYPEHRTHFFYLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADT 895
Query: 882 GLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFA-VLTDTFHKPGFKLHVLVL-QHLFC 939
GL +L +L+N E Q + Y Q F +L F H L H
Sbjct: 896 GLQILYTLLQNVAQEEAAAQSF--Y-----QTYFCDILQHIFSVVTDTSHTAGLTMHASI 948
Query: 940 LVESGLLTEPLWDAATIPYPYP-NNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESR 998
L L E + T+ P NN +F++EY LL ++FP++ A+V FV GL
Sbjct: 949 LAYMFNLVEEGKISTTLNPSNPVNNQVFIQEYVANLLKSAFPHLQDAQVKVFVTGLFSLN 1008
Query: 999 NDLSTFKNHIRDFLVQSKEFSAQDNKDLYXXXXXXXXXXXXXX----MLSIPGLIAPNEI 1054
D++ FK H+RDFLVQ KEF+ +D DL+ +S+PG++ P+EI
Sbjct: 1009 QDIAAFKEHLRDFLVQIKEFAGEDTSDLFLEEREASLRQAQEEKHKLQMSVPGILNPHEI 1068
Query: 1055 QDEMVD 1060
+EM D
Sbjct: 1069 PEEMCD 1074
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P14068 | XPO1_SCHPO | No assigned EC number | 0.4780 | 0.9811 | 0.9656 | yes | no |
| Q54EV7 | XPO1_DICDI | No assigned EC number | 0.4663 | 0.9679 | 0.9716 | yes | no |
| Q9TVM2 | XPO1_DROME | No assigned EC number | 0.4601 | 0.9717 | 0.9698 | yes | no |
| O14980 | XPO1_HUMAN | No assigned EC number | 0.4967 | 0.9764 | 0.9673 | yes | no |
| Q80U96 | XPO1_RAT | No assigned EC number | 0.4986 | 0.9764 | 0.9673 | yes | no |
| P30822 | XPO1_YEAST | No assigned EC number | 0.4103 | 0.9886 | 0.9677 | yes | no |
| Q6P5F9 | XPO1_MOUSE | No assigned EC number | 0.4995 | 0.9764 | 0.9673 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00014046001 | SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shotgun sequence); (1076 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00032600001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (241 aa) | • | • | • | 0.827 | ||||||
| GSVIVG00032601001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (254 aa) | • | • | • | 0.825 | ||||||
| GSVIVG00034551001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (267 aa) | • | • | • | 0.824 | ||||||
| GSVIVG00029274001 | SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (752 aa) | • | 0.800 | ||||||||
| GSVIVG00028763001 | RecName- Full=DNA topoisomerase 2; EC=5.99.1.3;; Control of topological states of DNA by transi [...] (1489 aa) | • | • | • | 0.737 | ||||||
| GSVIVG00024067001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (200 aa) | • | • | • | 0.722 | ||||||
| GSVIVG00026673001 | SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (504 aa) | • | • | • | 0.716 | ||||||
| GSVIVG00008629001 | SubName- Full=Chromosome undetermined scaffold_203, whole genome shotgun sequence; (922 aa) | • | • | 0.682 | |||||||
| GSVIVG00032223001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (220 aa) | • | • | • | 0.637 | ||||||
| GSVIVG00017939001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (419 aa) | • | • | 0.632 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1061 | |||
| COG5101 | 1053 | COG5101, CRM1, Importin beta-related nuclear trans | 0.0 | |
| smart01102 | 321 | smart01102, CRM1_C, CRM1 C terminal | 1e-128 | |
| pfam08767 | 279 | pfam08767, CRM1_C, CRM1 C terminal | 1e-115 | |
| pfam08389 | 147 | pfam08389, Xpo1, Exportin 1-like protein | 8e-47 | |
| smart00913 | 67 | smart00913, IBN_N, Importin-beta N-terminal domain | 2e-14 | |
| pfam03810 | 71 | pfam03810, IBN_N, Importin-beta N-terminal domain | 3e-11 | |
| COG5656 | 970 | COG5656, SXM1, Importin, protein involved in nucle | 2e-04 |
| >gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 956 bits (2472), Expect = 0.0
Identities = 439/1054 (41%), Positives = 612/1054 (58%), Gaps = 35/1054 (3%)
Query: 4 EKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKN 63
E + + + +D+ALLD V FY G ++ A +IL Q PD W + +IL NSK
Sbjct: 2 EGILEFDKDLDIALLDKVVTTFY-QGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKL 60
Query: 64 LNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNI 123
+K+ AL +L+ +I +W LP R G++NY+ +++++ S ++ +++ +NKL++
Sbjct: 61 PQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDL 120
Query: 124 ILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIK 183
LVQILK EWP W +FIP+L+ ++ S +CEN M +LKLLSEEVFDFS +MTQ K +
Sbjct: 121 TLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKR 180
Query: 184 ELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL- 242
LK + EF I LC +L S+ LI ATL +L FL WIPL YIFE+ ++E +L
Sbjct: 181 LLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLE 240
Query: 243 KFFPMPSYRNLTLQCLTEVGALNFGDFYNV----QYVNMYNVFMVQLQT-ILPPTTNIPE 297
F MP R TL CLTE+ L N V + P +I E
Sbjct: 241 HFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYE 300
Query: 298 AYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVF 357
Y + EQ F+Q LA F +S ++ +I +LE+ +E LL YLI IS ++E E+F
Sbjct: 301 VYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEA-REMAENLLNAHGYLIQISRINEREIF 359
Query: 358 KVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPL 417
K L+YWN V +L+ L ++ + S + R+ +Y L
Sbjct: 360 KTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGIL 419
Query: 418 SKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTE 477
S+LR+++I M +PEEVLIVE++ G IVRE +K+ D + YK MRE L+YL+HL +DTE
Sbjct: 420 SQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIVDDTE 479
Query: 478 KQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKG 537
K M+ KL++QL G++W+WNNLNTLCWAIGSISG+M E E RF V VI+DLL LCEM +G
Sbjct: 480 KYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRG 539
Query: 538 KDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597
KDNKAV+ASNIMYVVGQYPRFL+AHW FLKTVV KLFEFMHE H GVQDMACDTF+KIVQ
Sbjct: 540 KDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQ 599
Query: 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657
KC FV Q GE+EPF+ ++ L T DLEP Q HTFYE+ G +I + +
Sbjct: 600 KCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRL 659
Query: 658 LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717
+ LM LPN W I+ QA ++++ L D ++ N ++TN + ++LG F Q
Sbjct: 660 VLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFYPQTCSS 719
Query: 718 FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG 777
+ ML +Y S IS+S+++ G A+KT V+ LR++K+E LKL+ T++ KA D +
Sbjct: 720 YCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQ 779
Query: 778 ---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEM 822
K NVPDAR++EVL+L TI+ + + ++F CTL M
Sbjct: 780 NDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIM 839
Query: 823 ITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETG 882
I K+F++YPEHR F LL I F A + KLV ++I+W+F+H R++++ G
Sbjct: 840 IVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLG 899
Query: 883 LNLLLEMLKNF--QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCL 940
LN+LL + KN F NQFY Y+++ + I VLTD+ HK GF L+L L L
Sbjct: 900 LNILLILFKNCHEMGVPFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIRL 959
Query: 941 VESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRND 1000
V+ ++ PL+D N + EY + L SFPN+T V F GL E D
Sbjct: 960 VKDNKISVPLYDGIN------PNITILSEYIVGLFVKSFPNITQESVKIFSVGLFELCGD 1013
Query: 1001 LSTFKNHIRDFLVQSKEF----SAQDNKDLYAEE 1030
FK H+ DF V+ EF Q+ DL E
Sbjct: 1014 DEIFKEHVEDFRVKVYEFGTDEDLQEEIDLKNER 1047
|
Length = 1053 |
| >gnl|CDD|198170 smart01102, CRM1_C, CRM1 C terminal | Back alignment and domain information |
|---|
Score = 393 bits (1011), Expect = e-128
Identities = 164/325 (50%), Positives = 224/325 (68%), Gaps = 21/325 (6%)
Query: 713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAED 772
Q+ I+LDMLN+Y+ YSELIS++++ G A+KT V+ LR++KRE LKLIET++ KAED
Sbjct: 1 QLGRIYLDMLNLYRAYSELISAAVAKEGTIATKTPKVRGLRTIKREILKLIETYISKAED 60
Query: 773 QPQIGKQ---------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQ 817
+ + NVPDARE+EVLSL TI+NK + +VP I +A+F+
Sbjct: 61 LEFVAENFVPPLLEAVLGDYRRNVPDAREAEVLSLMTTIVNKLGNLLTPEVPLILDAVFE 120
Query: 818 CTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERN 877
CTL+MI K+FE+YPEHR+ FF LLRAI +HCFPA + L +Q KLV+DSI+WAF+HT+R+
Sbjct: 121 CTLDMINKDFEEYPEHRVNFFKLLRAINSHCFPAFLSLPPEQFKLVIDSIVWAFKHTDRD 180
Query: 878 IAETGLNLLLEMLKNFQA--SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQ 935
+A+TGLN+LLE+L N S+ N+FY+ Y+ +I Q+IF+VLTD+ HK GFKL L+L
Sbjct: 181 VADTGLNILLELLNNVSKKDSQIANEFYKQYYFSILQDIFSVLTDSDHKSGFKLQCLLLA 240
Query: 936 HLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLL 995
LF LVE ++ PL+DA P NN F++EY LL T+FPN+T ++ FV GL
Sbjct: 241 KLFRLVEENPISVPLYDAP----PGTNNKNFLQEYLANLLSTAFPNLTQEQIKSFVVGLF 296
Query: 996 ESRNDLSTFKNHIRDFLVQSKEFSA 1020
E D + FK H+RDFL+Q KEF
Sbjct: 297 ELNGDDNAFKEHLRDFLIQIKEFGG 321
|
CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat. Length = 321 |
| >gnl|CDD|204057 pfam08767, CRM1_C, CRM1 C terminal | Back alignment and domain information |
|---|
Score = 357 bits (919), Expect = e-115
Identities = 152/323 (47%), Positives = 197/323 (60%), Gaps = 61/323 (18%)
Query: 713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAED 772
Q+ I+LDMLN+Y+ YSELIS +I++ G A+KT V+LLR+VK+E LKLIET++ KAED
Sbjct: 1 QLGRIYLDMLNLYRAYSELISQAIAADGENATKTPLVRLLRTVKKEILKLIETYISKAED 60
Query: 773 QPQIGKQ---------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQ 817
++G NVPDARE EVLSL TIINK + D+VP I EA+F+
Sbjct: 61 LEEVGNNLVPPLLDAVLGDYQRNVPDAREPEVLSLMTTIINKLGNEITDEVPLILEAVFE 120
Query: 818 CTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERN 877
CTL+MI K+FE+YPEHR++FF LLRAI HCF AL+ L +Q KLV+DSI+WAF+HT R+
Sbjct: 121 CTLDMINKDFEEYPEHRVEFFKLLRAINLHCFDALLNLPPEQFKLVIDSIVWAFKHTNRD 180
Query: 878 IAETGLNLLLEMLKNF-QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQH 936
+A+TGLN+LLE+LKN S N+FY Y+++I QEIF VLTDT
Sbjct: 181 VADTGLNILLELLKNVENKSNVANKFYFQYYLSILQEIFEVLTDTD-------------- 226
Query: 937 LFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLE 996
EY LL +FPN+T ++ FV GL +
Sbjct: 227 -------------------------------SEYIANLLSNAFPNLTQDQIKNFVVGLFK 255
Query: 997 SRNDLSTFKNHIRDFLVQSKEFS 1019
NDL FK H+RDFL+Q KEF
Sbjct: 256 LSNDLKKFKEHLRDFLIQLKEFG 278
|
CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat. Length = 279 |
| >gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 8e-47
Identities = 61/147 (41%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 114 ERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFS 173
+ NKL + L ++ K EWP+ W +F PDLV+ +S + CE + ILK+L EE+FDFS
Sbjct: 1 PKFIRNKLALALAELAKQEWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFDFS 60
Query: 174 RGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRT--DLIRATLSTLHAFLSWIPLGY 231
R +TQQ+ LK L S+ I EL L +L S +L+ ATL L ++LSWIP+G
Sbjct: 61 RTPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLSWIPIGL 120
Query: 232 IFESPLLETLLKFFPMPSYRNLTLQCL 258
I PLL L + P R ++CL
Sbjct: 121 ILNDPLLNLLFQLLSDPDLREAAVECL 147
|
The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147 |
| >gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-14
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 37 ADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNY 96
A++ L Q +P WL ++ IL NS++ + A L+ I RW++LP E+++ +KN
Sbjct: 1 AEKQLEQFQKSPGFWLLLLEILANSEDQYVRQLAAITLKNKITRRWSSLPEEEKEEIKNS 60
Query: 97 ISEVIVQ 103
+ E+++
Sbjct: 61 LLELLLS 67
|
Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins.. which is important for importin-beta mediated transport. Length = 67 |
| >gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-11
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 37 ADQILRDLQN-NPDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWN--ALPVEQRDG 92
A++ L + +P W +++ IL + S +L + A L+ +I WN +LP E+++
Sbjct: 1 AEKQLEQFEKQDPGFWSKLLQILSDTSSDLQVRQLAALYLKNLITRHWNQLSLPPEEKEQ 60
Query: 93 MKNYISEVIVQ 103
++N + ++
Sbjct: 61 IRNNLLNLLGS 71
|
Length = 71 |
| >gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 73/318 (22%), Positives = 120/318 (37%), Gaps = 42/318 (13%)
Query: 34 RTAADQILRDLQNNPDMWLQVVHILQNSK-NLNTKFFALQVLEGVIKYRWNAL-----PV 87
RT A+ +L+DL+ P + ++HI + +LN K A + I W++
Sbjct: 20 RTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKA 79
Query: 88 EQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAA 147
+++ K Y+ E I+ + S R LN ILV I + P+ P
Sbjct: 80 DEKSEAKKYLIENILDVFLY--SPEVTRTA---LNAILVNIFSEDKPSDLWGLFPKAANL 134
Query: 148 AKTSETICENCMAILKLLSEEVFDFSRGEM--TQQKIKELKQSL---------NSEFQ-- 194
++SE +L L EE+F R + Q I L +L N E Q
Sbjct: 135 LRSSE-ANHVYTGLLCL--EELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGN 191
Query: 195 -LIHELCLYVLSASQRTDL--IRATLSTLHAFLSWIPLG-YIFESPLLETLLKFFPMPSY 250
E + +L + + + LS + F SW L I + PL +L P
Sbjct: 192 YGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLDPEVRS 251
Query: 251 RNLTLQC-------LTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGN 303
+ ++C L Y Y++ Y FM ++ IL E + G
Sbjct: 252 LSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQG- 310
Query: 304 SEEQAFIQNLALFFTSFF 321
Q ++ ++ L+F FF
Sbjct: 311 ---QLWLSDIELYFIDFF 325
|
Length = 970 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1061 | |||
| COG5101 | 1053 | CRM1 Importin beta-related nuclear transport recep | 100.0 | |
| KOG2020 | 1041 | consensus Nuclear transport receptor CRM1/MSN5 (im | 100.0 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 100.0 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 100.0 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 100.0 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| KOG1410 | 1082 | consensus Nuclear transport receptor RanBP16 (impo | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.96 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.89 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 99.87 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 99.83 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 99.74 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 99.62 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.56 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 99.56 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 99.31 | |
| PF03810 | 77 | IBN_N: Importin-beta N-terminal domain; InterPro: | 98.85 | |
| KOG4541 | 748 | consensus Nuclear transport receptor exportin 4 (i | 98.58 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.34 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.08 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.07 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 97.51 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 97.5 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.41 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.28 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.22 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.93 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 96.73 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 96.42 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.35 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 95.67 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.65 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.35 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 94.79 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.73 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 94.15 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.79 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 93.62 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 92.69 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 91.88 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 91.74 | |
| PF08767 | 319 | CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 | 91.59 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 91.58 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 90.81 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 90.25 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 89.95 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 89.47 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 88.74 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 88.5 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.56 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 86.27 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 85.48 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 85.24 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 84.01 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 82.15 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 80.77 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 80.72 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 80.46 |
| >COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-170 Score=1368.14 Aligned_cols=1008 Identities=43% Similarity=0.730 Sum_probs=947.6
Q ss_pred hHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhccc
Q 036770 3 AEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRW 82 (1061)
Q Consensus 3 ~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w 82 (1061)
||.||+|+.++|++.++++|..+|.|.+. +++||+++|.+||+.|+||+.+++||..|..++.+|.|+++|+..|.++|
T Consensus 1 MEgIL~fd~dLdiallDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkW 79 (1053)
T COG5101 1 MEGILEFDKDLDIALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKW 79 (1053)
T ss_pred CcchhhcccccCHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhh
Confidence 89999999999999999999999999665 88999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHH
Q 036770 83 NALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAIL 162 (1061)
Q Consensus 83 ~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL 162 (1061)
+-+|.++|.+||+++++.++..++++.....++++.||+..+++.|++++||.+||+||+++++.++.+...|+++|.+|
T Consensus 80 kllp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivL 159 (1053)
T COG5101 80 KLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVL 159 (1053)
T ss_pred hhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHH
Confidence 99999999999999999999988888878889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHH
Q 036770 163 KLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL 242 (1061)
Q Consensus 163 ~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~ 242 (1061)
+.|+|||++++.+++++.|++.+|.+|..++++||.+|.++|+.+.+++++.++|..+..|+.|+|+++++++++++++.
T Consensus 160 klLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~ 239 (1053)
T COG5101 160 KLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVL 239 (1053)
T ss_pred HHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hhCCCccchHHHHHHHHHHhcCcCCcchH----HHHHHHHHHHHHHHH-hhCCCCCChhhhhcCCCcchHHHHHHHHHH
Q 036770 243 -KFFPMPSYRNLTLQCLTEVGALNFGDFYN----VQYVNMYNVFMVQLQ-TILPPTTNIPEAYAHGNSEEQAFIQNLALF 316 (1061)
Q Consensus 243 -~~L~~~~~~~~a~~cL~ei~~~~~~~~~~----~~~~~~f~~~l~~l~-~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l 316 (1061)
++++.|++|.++++||+||++++..|.+. ..+.-.|+.++.... ...|...++.++|+..+..|+.|++++|.|
T Consensus 240 ~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~f 319 (1053)
T COG5101 240 EHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQF 319 (1053)
T ss_pred HHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHH
Confidence 78889999999999999999987444332 345556665555544 467778889999998888899999999999
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccC----CCCC
Q 036770 317 FTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMM----GLPM 392 (1061)
Q Consensus 317 ~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~----g~~~ 392 (1061)
++++.+.|..++|+.. ..+.+..++.||++++.+++.|+|+.|+|||+.++.++|.+.+..|..+. +|++ |...
T Consensus 320 L~s~~~~~~~lLE~~e-~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem-~Pli~ls~~s~~ 397 (1053)
T COG5101 320 LSSLYEVYISLLEARE-MAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEM-SPLIQLSVGSQA 397 (1053)
T ss_pred HHHHHHHHHHHhcChh-HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-Ccchhccccchh
Confidence 9999999999999864 45667799999999999999999999999999999999999988887654 5643 2211
Q ss_pred C-CCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcC
Q 036770 393 P-LLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHL 471 (1061)
Q Consensus 393 ~-~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l 471 (1061)
+ .+|...++ .+.|++.|..++++|+.+++++|.+|+||+++++|+||.+|++.+|+|++.+|++||++|+||||+
T Consensus 398 istnpn~~~~----~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL 473 (1053)
T COG5101 398 ISTNPNQDST----KPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHL 473 (1053)
T ss_pred ccCCcchhcc----cchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhh
Confidence 0 01333333 388999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHH
Q 036770 472 DHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYV 551 (1061)
Q Consensus 472 ~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ 551 (1061)
+..|+..+|.+++..+++|.+|+|++++++|||+|||||+|.++.|++|++.++++|+.||+.++||++|+++||+|||+
T Consensus 474 ~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyv 553 (1053)
T COG5101 474 IVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYV 553 (1053)
T ss_pred hhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCc
Q 036770 552 VGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEP 631 (1061)
Q Consensus 552 ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~ 631 (1061)
+||||||+++||.||++|++|||+|||+.|+||++|||++|.+|+++|+.||+.+++||.+||+..|+++++.++++|.+
T Consensus 554 vGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~p 633 (1053)
T COG5101 554 VGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEP 633 (1053)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhH
Q 036770 632 HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFL 711 (1061)
Q Consensus 632 ~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~ 711 (1061)
.+.+.+|||+|.+|+.+|....+.+++-.+|+.+++.|..+..++..++..+.|+..++...+.+++++..|.++|..|.
T Consensus 634 qQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~fy 713 (1053)
T COG5101 634 QQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFY 713 (1053)
T ss_pred HHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999998888899999999999999999998888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhh---------------
Q 036770 712 SQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQI--------------- 776 (1061)
Q Consensus 712 ~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l--------------- 776 (1061)
|+....|-.++..|...+..|...++..|-.+++.|.+|.+|++|++|++++.+|+++..++..+
T Consensus 714 Pq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~eaVl~D 793 (1053)
T COG5101 714 PQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLCEAVLFD 793 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988775433
Q ss_pred hhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCC
Q 036770 777 GKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLS 856 (1061)
Q Consensus 777 ~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~ 856 (1061)
+.+++|++|++++|+|++++|.+.++.+....+.++..+|.||+.|+.+|+.+|||||.+||.|+..++..||.++++.|
T Consensus 794 Y~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~mi~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p 873 (1053)
T COG5101 794 YKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIMIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFP 873 (1053)
T ss_pred HhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 22388999999999999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHH
Q 036770 857 SQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA--SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVL 934 (1061)
Q Consensus 857 ~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L 934 (1061)
++.|+.++++++|+++|-.|++++.||+++..+++++.. ..++++||++||+.++..++.++||+.|++||++|+.+|
T Consensus 874 ~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Lll 953 (1053)
T COG5101 874 QPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLL 953 (1053)
T ss_pred cHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHH
Confidence 999999999999999999999999999999999999865 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 036770 935 QHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQ 1014 (1061)
Q Consensus 935 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~ 1014 (1061)
+.++++++.|+|++|+|+. |..|..++++|+.+++.++|||++++++..|..+|+..++|..-||.|++||.++
T Consensus 954 a~li~lv~dnkisVPlyd~------~~~n~~~lseyi~~l~~~sfp~it~e~v~~f~~~l~~~~~d~~ifk~~~~df~vk 1027 (1053)
T COG5101 954 AFLIRLVKDNKISVPLYDG------INPNITILSEYIVGLFVKSFPNITQESVKIFSVGLFELCGDDEIFKEHVEDFRVK 1027 (1053)
T ss_pred HHHHHHHhccccccccccC------CCCchhhHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHhCcHHHHHHHHHHHhhh
Confidence 9999999999999999995 4588999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCh
Q 036770 1015 SKEFSAQDNK 1024 (1061)
Q Consensus 1015 ~k~~~~~~~~ 1024 (1061)
.+|||| |++
T Consensus 1028 v~e~g~-d~~ 1036 (1053)
T COG5101 1028 VYEFGT-DED 1036 (1053)
T ss_pred eeeeCC-Ccc
Confidence 999977 887
|
|
| >KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-110 Score=1001.11 Aligned_cols=1020 Identities=54% Similarity=0.867 Sum_probs=933.3
Q ss_pred hhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCC
Q 036770 6 LRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNAL 85 (1061)
Q Consensus 6 ~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l 85 (1061)
++| +++.|++.+++.+..+|..++.+.|.+|+++|.+||..|++|..|..+|..++++.+||||+|+|++.|+++|+.+
T Consensus 2 ~~~-~~~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~ 80 (1041)
T KOG2020|consen 2 LLD-DNKLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSL 80 (1041)
T ss_pred Ccc-chhHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccC
Confidence 577 8888999999999998875677799999999999999999999999999998999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHH
Q 036770 86 PVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLL 165 (1061)
Q Consensus 86 ~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l 165 (1061)
|.++|.++|+++++.+...+++....+..+++++|++.++++|+|++||+.||+|++++.+.++.++..|++++.+|+.|
T Consensus 81 ~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 81 PVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLL 160 (1041)
T ss_pred CccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHH
Confidence 99999999999999998876666556678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHH-hh
Q 036770 166 SEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL-KF 244 (1061)
Q Consensus 166 ~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~-~~ 244 (1061)
+|||+++++..+++.|+..++..+...+..|+++|..+..++... ++.++|.++..|++|||.+++++++.+..++ .+
T Consensus 161 sEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~-~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~~ 239 (1041)
T KOG2020|consen 161 SEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSE-LLSATLETLLRFLEWIPLGYIFETNILELLLNKF 239 (1041)
T ss_pred HHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHhc
Confidence 999999998888988888888888899999999999998887766 9999999999999999999999988888777 67
Q ss_pred CCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchH-HHHHHHHHHHHHHHHH
Q 036770 245 FPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQ-AFIQNLALFFTSFFKF 323 (1061)
Q Consensus 245 L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~-~~~~~l~~l~~~~~~~ 323 (1061)
++.|++|..|++||+++++++.. .|+.+...+|+..+..+. .++...++.++|......|+ .|+++++.+++.|++.
T Consensus 240 ln~~~~r~~al~CL~ei~s~~~~-~~~~~~~~~~~~~~~~l~-~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~ 317 (1041)
T KOG2020|consen 240 LNAPELRNNALSCLTELLSRKRS-IYERKTVPMFNLTIYQLR-SIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQ 317 (1041)
T ss_pred cchHHHHHHHHHHHHHHHhcccc-chhHHhHHHHHHHHHHHH-HhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998654 467777888887777766 66677888888887777788 8999999999999999
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchh--hhh
Q 036770 324 HIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSV--VDG 401 (1061)
Q Consensus 324 ~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~--l~~ 401 (1061)
|..++|......+.+..++.+++.++..++.++++.|+++|..++.+++.. + .|......| .|+. ..+
T Consensus 318 ~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~-~-~~ll~~s~~--------~~~~~~~~r 387 (1041)
T KOG2020|consen 318 HIALLESSLSQRPVLLEALLELILISTIEPSEIFKICLDYWNKLVADLYYN-K-PPLLQLSTT--------LPSISDYSR 387 (1041)
T ss_pred HHHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhhhcc-c-ccccccccc--------cccccchhc
Confidence 999999854445666788899999999999999999999999999998764 2 121110001 0111 222
Q ss_pred hhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHH
Q 036770 402 IGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQML 481 (1061)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~ 481 (1061)
. +.++..|..++++++...+.+|++|+++++++++.|+.+|+.++|.+.+.+|+.+++++.++++++..++..++.
T Consensus 388 i----~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~ 463 (1041)
T KOG2020|consen 388 I----DFRKSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMT 463 (1041)
T ss_pred c----chHHHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhh
Confidence 2 556889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH
Q 036770 482 KKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA 561 (1061)
Q Consensus 482 ~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~ 561 (1061)
.++..++++..|+|+.++..|||+|+++|.+.++.+++|+..++..++++|+.+.|+++++++++++||++|+||+|++.
T Consensus 464 ~kl~~~l~~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~ 543 (1041)
T KOG2020|consen 464 EKLAIQLDGDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKA 543 (1041)
T ss_pred HhHHHHhhHHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHH
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHH
Q 036770 562 HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESV 641 (1061)
Q Consensus 562 ~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eai 641 (1061)
||.+|+++.++|++|||+.|++|++|||++|.+|+.+|+.+|+..++++..||+..++..+..+.+++.+.++..+|+|+
T Consensus 544 h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~~~q~~~~~~al 623 (1041)
T KOG2020|consen 544 HWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQPQQRHTFYEAL 623 (1041)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHH
Q 036770 642 GHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDM 721 (1061)
Q Consensus 642 g~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~l 721 (1061)
|.+|++...+..+.++.+.++..++..|..++.++..+...+.+++.++.+.+++.+++++++++|++|.++.+.+++++
T Consensus 624 ~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~~~~~~~~~d~ 703 (1041)
T KOG2020|consen 624 GLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGSTFVPQLGKIYLDM 703 (1041)
T ss_pred HHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCcccccccccccHHH
Confidence 99999988888888999999999999999988887777778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhh---------------hhcCCCCcch
Q 036770 722 LNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQI---------------GKQNVPDARE 786 (1061)
Q Consensus 722 l~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l---------------~~~~~~~~r~ 786 (1061)
+++|..++..++..+...|..+++.|+++.++.+++++..++.++++...+...+ +..++|+.|.
T Consensus 704 ~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~nvPd~r~ 783 (1041)
T KOG2020|consen 704 LQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYLDNVPDYRE 783 (1041)
T ss_pred HHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHHccCcchhc
Confidence 9999999999999999999999999999999999999999999999987542211 2248999999
Q ss_pred HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHH
Q 036770 787 SEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDS 866 (1061)
Q Consensus 787 ~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~ 866 (1061)
+.++++.+.++.++|..+...++.++.++++|++.|+++++.++||+|.+|+.++.++...|+..+..+|+++++.+.++
T Consensus 784 ~~vl~l~~~iv~~Lg~~i~~~~~~i~~~v~~c~l~m~~~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~s 863 (1041)
T KOG2020|consen 784 NEVLSLNATIVPKLGEFIPAELPLINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDS 863 (1041)
T ss_pred chHHHhhhhhhhhhhhHhhhhccHHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCC
Q 036770 867 IIWAFRHTERNIAETGLNLLLEMLKNFQASE-FCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945 (1061)
Q Consensus 867 i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~ 945 (1061)
+.|+++|..|+|+++++..+..++++..... ..++||++||..++..++.+.+|+.|+++|..|+..+..++++.+.+.
T Consensus 864 i~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~L~~~~l~~l~~~~~ 943 (1041)
T KOG2020|consen 864 IVWAFHHTMRNIAENGLNILLELLKNLAEMEKFANAFYQTYFLSLLQKIIAVLTDTDHKAGFTKQVLKLQFLFRLVESAK 943 (1041)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhhcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999987644 789999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhcccCCChh
Q 036770 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKD 1025 (1061)
Q Consensus 946 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~~~~~~ 1025 (1061)
+..|+++...++ .|..++.+++..++.+.||+++++++..|..+++..++|...|++++|| ++.+|++|.+..+
T Consensus 944 ~~~~l~~~~~v~----~n~~~L~e~i~~~l~~~f~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~d--~~~~e~~~~~~~~ 1017 (1041)
T KOG2020|consen 944 LHTPLLQGNVVH----GNQAFLREYIYGLLRPAFPNLTDEQVRAFDIGLFDECKDVSPFKDHVRD--VQIKEFGGQDTSD 1017 (1041)
T ss_pred HHHhhccccccc----hHHHHHHHHHHHhhhhhchhhchHHHHHHhHHHHHHhcccchhhcchhh--HHHHHhcccchHH
Confidence 999999987655 2778999999999999999999999999999999999999999999999 9999999966669
Q ss_pred hhHHHHHHHHHHHHHhhccCCCcCC
Q 036770 1026 LYAEEAAAQRERERQRMLSIPGLIA 1050 (1061)
Q Consensus 1026 l~~~e~~~~~~~~~~~~~~~~g~~~ 1050 (1061)
+|.+|++.+....++ ...+||+++
T Consensus 1018 l~~~e~~~~~~r~~~-~~~~pgi~~ 1041 (1041)
T KOG2020|consen 1018 LFREEAEIRLLRANQ-MLLIPGILD 1041 (1041)
T ss_pred HHHHHhhHHhhhhhc-ccCCcccCC
Confidence 999999998444444 778898864
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-70 Score=603.39 Aligned_cols=903 Identities=15% Similarity=0.241 Sum_probs=666.0
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 036770 16 ALLDATVAAFYGTG-SKEERTAADQILRDLQNNPDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYRWNALPVEQRDGM 93 (1061)
Q Consensus 16 ~~l~~av~~ly~~~-~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l 93 (1061)
+.++|||.+..+|. |+..|+||-++++++|.||++|++|..++..+ .++.+||||+|||.++++..+++.+..+.+.+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlv 82 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLV 82 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence 57899999999985 99999999999999999999999999999765 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhH--HHHHHHHHHHHHHHHhc
Q 036770 94 KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETI--CENCMAILKLLSEEVFD 171 (1061)
Q Consensus 94 r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~--~~~~L~iL~~l~EEv~~ 171 (1061)
|..+++|+.-.+-++.....+.+++||++++++.++..+||..|++|+.|+......++.. .+.++++|..+..|+.|
T Consensus 83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEiad 162 (980)
T KOG2021|consen 83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIAD 162 (980)
T ss_pred HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhhh
Confidence 9999999987654444355679999999999999999999999999999999988876544 88999999999999998
Q ss_pred cC--cccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhC
Q 036770 172 FS--RGEMTQQKIKELKQSLN-SEFQLIHELCLYVLSAS---QRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFF 245 (1061)
Q Consensus 172 ~~--~~~l~~~r~~~l~~~l~-~~~~~I~~~~~~~L~~~---~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L 245 (1061)
.. +..-...|++.+||+|| +++|++.+.|++++... .++.+...+|+|+++|++||+++.+.+..+++++++++
T Consensus 163 ~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl 242 (980)
T KOG2021|consen 163 QDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFL 242 (980)
T ss_pred ccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHH
Confidence 32 23334578899999999 78999999999999763 37899999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHhcCcCCcchHH-HHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 036770 246 PMPSYRNLTLQCLTEVGALNFGDFYNV-QYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFH 324 (1061)
Q Consensus 246 ~~~~~~~~a~~cL~ei~~~~~~~~~~~-~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~ 324 (1061)
..+++|.+|++|+.++++++|+| .++ .+......+.+ ++ ........+|.+|.++++++++++|.+.
T Consensus 243 ~ieelR~aac~cilaiVsKkMkP-~dKL~lln~L~q~l~----lf-------g~~s~dq~~d~df~e~vskLitg~gvel 310 (980)
T KOG2021|consen 243 NIEELRIAACNCILAIVSKKMKP-MDKLALLNMLNQTLE----LF-------GYHSADQMDDLDFWESVSKLITGFGVEL 310 (980)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHH----HH-------hhhccccccCchHHHHHHHHHhhcceee
Confidence 99999999999999999999987 333 23333322222 11 0111233478899999999999999986
Q ss_pred HHHhccc-----h----hhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCC
Q 036770 325 IRVLEST-----Q----ENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLL 395 (1061)
Q Consensus 325 ~~ile~~-----~----~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 395 (1061)
..+.+.. + +....+...+-+|++...++++++.--.++||+.++..+-+ ....+ +
T Consensus 311 ~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKk-l~~ls----------~----- 374 (980)
T KOG2021|consen 311 TIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKK-LKALS----------S----- 374 (980)
T ss_pred ehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhh-ccccc----------c-----
Confidence 4433321 1 12334446677888888888889999999999999877632 21110 0
Q ss_pred chhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCcccccccc----CCchhHHhhhcchhhHHHHHHHHHHHHHHhcC
Q 036770 396 PSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVED----ENGNIVRETMKDNDVLVQYKIMRETLIYLSHL 471 (1061)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~----d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l 471 (1061)
+. ...+.++..++++||.|++.....|+ |+.+.|.|+|+ ..+.-+..+..+
T Consensus 375 -----------~q-----k~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rk---------kLk~fqdti~~i 429 (980)
T KOG2021|consen 375 -----------PQ-----KVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRK---------KLKNFQDTIVVI 429 (980)
T ss_pred -----------hh-----hccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 01 23366677788899999886542222 23334444444 334555667888
Q ss_pred CHHhHHHHHHHHHHhhc-cCCccccchhhHHHHHHHhhhCCCChhHH----h-----HHHHHHHHHHHHhhhhhcCCcch
Q 036770 472 DHEDTEKQMLKKLSKQL-SGEDWTWNNLNTLCWAIGSISGSMMEEQE----N-----RFLVMVIRDLLNLCEMTKGKDNK 541 (1061)
Q Consensus 472 ~~~~~~~~i~~~L~~~~-~~~~~~w~~le~~~~algsis~~~~~~~e----~-----~~l~~vi~~Ll~l~~~~~~~~~k 541 (1061)
+|+-+...+.+.+...+ +.++.+|+.+|.++|.+...++++..+.- . ..+..++..++. ....+. +.
T Consensus 430 dpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~t--sqv~~h-~h 506 (980)
T KOG2021|consen 430 DPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMT--SQVLAH-DH 506 (980)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHH--cccccC-Cc
Confidence 99888888888887765 34567999999999999999988765421 1 122222222221 111122 34
Q ss_pred HHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHH--hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHH
Q 036770 542 AVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFE--FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELL 619 (1061)
Q Consensus 542 ~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~--~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il 619 (1061)
..|+--.|+++.||..|+...+.+.+.+++++++ ++|+.+..|+.||+|+|.|+++.-++++++ |+++++
T Consensus 507 ~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvp--------fie~il 578 (980)
T KOG2021|consen 507 ELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVP--------FIEEIL 578 (980)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 5567778899999999999999999999999998 999999999999999999999999999985 999999
Q ss_pred HhHHHhhh------------cCCcchHHHHHHHHhhhhccCCC-HHHHHHHHHHHhhchHHHHHHHHHHH--hccccccC
Q 036770 620 SGLATTVA------------DLEPHQIHTFYESVGHMIQAESD-VQKREEYLQRLMLLPNQKWSEIIAQA--RQSVDFLK 684 (1061)
Q Consensus 620 ~~l~~~~~------------~l~~~~~~~l~eaig~li~~~~~-~~~~~~~l~~Ll~~~~~~~~~~~~~~--~~~~~~~~ 684 (1061)
+.+++... ...++++.++||++|.+|+.... ++.+..|.+.++.|+..+..-...++ .++ ..
T Consensus 579 n~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasd---e~ 655 (980)
T KOG2021|consen 579 NKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASD---EA 655 (980)
T ss_pred HHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhcc---cc
Confidence 99997761 23467899999999999987655 45678899999999877654322221 111 13
Q ss_pred CHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC-----CccchhhhHHHHHHHHHH
Q 036770 685 DQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGP-----FASKTSYVKLLRSVKRET 759 (1061)
Q Consensus 685 d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~-----~~~~~~~~~~~~~~~~~i 759 (1061)
-+..+..++|++.+.++.++|+...-.+.-. +..+.+|+...+.+..++...|- .+.++.+.|.+.+++..+
T Consensus 656 ~pv~Ia~c~~~lmaig~lakgf~~rlvt~~q---vg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~v 732 (980)
T KOG2021|consen 656 SPVVIAECHHILMAIGTLAKGFHIRLVTENQ---VGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKV 732 (980)
T ss_pred ccHHHHHHHHHHHHHHHHhhcccccCcchhc---ccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhh
Confidence 4566777889999999999987654422211 23455677888888777766553 234455567788888888
Q ss_pred HHHHHHHHhhCCChhhhhhcCCCCcc-hHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhh-ccC-------CC
Q 036770 760 LKLIETFLDKAEDQPQIGKQNVPDAR-ESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK-NFE-------DY 830 (1061)
Q Consensus 760 l~ll~~~i~~~~~~~~l~~~~~~~~r-~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~-~~~-------~~ 830 (1061)
++.+.+.++.. + +..+.+ ..+||.++++++++|+.++-+.+.+++..+...+++.|.. +.. +-
T Consensus 733 lPfipklie~l-----L---~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r~a~p~dt~aa~ek 804 (980)
T KOG2021|consen 733 LPFIPKLIELL-----L---SSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIERIAKPIDTAAAAEK 804 (980)
T ss_pred hcchHHHHHHH-----H---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChhHHHHH
Confidence 88888877654 2 222333 3579999999999999887666666666555555565541 111 23
Q ss_pred hHhHHHHHHHHHHHHhhchhHhhcCC--hHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 036770 831 PEHRLKFFSLLRAIATHCFPALIRLS--SQQLKLVMDSIIWAFRH-TERNIAETGLNLLLEMLKNFQASEFCNQFYRTYF 907 (1061)
Q Consensus 831 Pd~~~~~f~ll~~i~~~~~~~l~~~~--~~~~~~~~~~i~~~~~~-~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~ 907 (1061)
-++|++|+.|+..+..+.+..++-.+ ...++.++..++.+... .+|-..+++...+..+...|+++....+ ++.|.
T Consensus 805 ~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lcnk~v~lwggkdg~~g-f~dfv 883 (980)
T KOG2021|consen 805 ILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLCNKIVCLWGGKDGDNG-FKDFV 883 (980)
T ss_pred HHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHHHHHHHHHHhcCCcCCccc-cccce
Confidence 34799999999999998776665433 24566677777755555 6666666666666677777876433222 23333
Q ss_pred HHHH--HHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCC--CC
Q 036770 908 VTIE--QEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPN--MT 983 (1061)
Q Consensus 908 ~~~~--~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~--~~ 983 (1061)
..+. +.||..+.+...+-.....-.++++++++++. ++.. .+.+ ++..+.+..||+ ++
T Consensus 884 lk~~~ln~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~------i~ek--------~gne----cv~yL~q~ylPs~q~p 945 (980)
T KOG2021|consen 884 LKIDGLNKCFPIPLEIPFNIKDGNTKTMLGELARLLKE------IFEK--------SGNE----CVKYLTQIYLPSIQLP 945 (980)
T ss_pred eecccccceeeecccCCcccccchHHHHHHHHHHHHHH------HHHH--------hchH----HHHHHHHHhcccccCC
Confidence 3222 24676666665555455555778887776543 2221 3343 444444458884 79
Q ss_pred HHHHHHHHHHHhhcCCChHHHHH-HHHHHHhhhhh
Q 036770 984 AAEVTQFVDGLLESRNDLSTFKN-HIRDFLVQSKE 1017 (1061)
Q Consensus 984 ~~q~~~f~~~l~~~~~d~~~f~~-~lrdF~~~~k~ 1017 (1061)
++-+.+|+++|.+. |.+.|++ ++..|+..+|.
T Consensus 946 qela~qycqaLq~~--d~k~Fk~~f~~~fis~lkp 978 (980)
T KOG2021|consen 946 QELAIQYCQALQTM--DQKQFKKWFVDNFISVLKP 978 (980)
T ss_pred HHHHHHHHHHHhcc--chhHHHHHHHHHHHHhcCC
Confidence 99999999999886 8999999 99999988773
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=530.09 Aligned_cols=894 Identities=15% Similarity=0.197 Sum_probs=658.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHH
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDG 92 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~ 92 (1061)
-+|+.+++++..+|++++++....+++||++.|.+|.+|...+++|+..+..++|||||.+|+.||+++|+..|++++..
T Consensus 4 ~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q 83 (982)
T KOG2022|consen 4 DLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQ 83 (982)
T ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence 37999999999999998888999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC--C-----hhHHHHHHHHHHHH
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT--S-----ETICENCMAILKLL 165 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~--~-----~~~~~~~L~iL~~l 165 (1061)
|+..++..+....++ ++.|.||++.+++.+..+.-|+.||+.+.+++..+.. + ...|...|+.|+.+
T Consensus 84 L~~klf~~l~~~~g~------~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 84 LKLKLFLILSRFAGG------PKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred HHHHHHHHHHHhcCC------chhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 999999999886544 4679999999999999999999999999999998875 2 23588999999999
Q ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cHH-----HHHHHHHHHHhcccccCcchhcchhhH
Q 036770 166 SEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ--RTD-----LIRATLSTLHAFLSWIPLGYIFESPLL 238 (1061)
Q Consensus 166 ~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~--~~~-----l~~~~L~~l~~~l~wi~~~~i~~~~ll 238 (1061)
|+|- +..+++..|+..++..+......++.++..+++... ..+ ....+++|++.|+.++.....-=..++
T Consensus 158 p~e~---q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~ 234 (982)
T KOG2022|consen 158 PAEF---QHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQIT 234 (982)
T ss_pred cHhh---hhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHH
Confidence 9983 446788899999999999988999998888888754 333 457999999999997765532223555
Q ss_pred HHHHhhCCC--ccchHHHHHHH------------HHHhcCcCCc---chHHHHHHHHHHHHHHHHhhCCCCCChhhhhcC
Q 036770 239 ETLLKFFPM--PSYRNLTLQCL------------TEVGALNFGD---FYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAH 301 (1061)
Q Consensus 239 ~~l~~~L~~--~~~~~~a~~cL------------~ei~~~~~~~---~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~ 301 (1061)
+.++..++. ....+++-+|+ .+.+.....+ .|...+..+.......++.+.. ..+...+
T Consensus 235 ~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~----~~~~~e~ 310 (982)
T KOG2022|consen 235 QVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSG----KIQEEEN 310 (982)
T ss_pred HHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 555554441 11123333333 2222211111 1222222222211111111110 0012212
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHH-Hhccc--hhhHHHHHHHHHHHHHhhccC-----hhhHHHHHHHHHHHHHHHHHH
Q 036770 302 GNSEEQAFIQNLALFFTSFFKFHIR-VLEST--QENISALLMGLEYLINISYVD-----ETEVFKVCLDYWNSFVLELFD 373 (1061)
Q Consensus 302 ~~~~d~~~~~~l~~l~~~~~~~~~~-ile~~--~~~~~~~~~~l~~ll~~~~~~-----d~ei~~~~l~fW~~l~~~l~~ 373 (1061)
.+ .-.+-+..+..+.++++++|.. +++.. ++..+.+.+.++.|+.|++.| ++-++..+++||+++.+++..
T Consensus 311 ~d-~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~ 389 (982)
T KOG2022|consen 311 AD-ASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQ 389 (982)
T ss_pred CC-chhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHH
Confidence 21 1245667789999999999854 44432 233456678889999999887 556788999999999988753
Q ss_pred HhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhH-HhhHHHHHHHHHhhCCCccccc--cccCCchhHHhhhc
Q 036770 374 AHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYA-VPLSKLRMLMICRMAKPEEVLI--VEDENGNIVRETMK 450 (1061)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~-~~l~~L~~~li~km~~p~e~~~--~~~d~~e~~~e~~~ 450 (1061)
...+ . . +.....|. +++.+|++++++||..|.+..+ |..|+.|.|+.||+
T Consensus 390 ~~~e-----~-~---------------------~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~ 442 (982)
T KOG2022|consen 390 TINE-----T-Q---------------------QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRK 442 (982)
T ss_pred hhhc-----c-C---------------------CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHH
Confidence 2110 0 0 12334555 9999999999999999976544 88999999999998
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhcc---CCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHH
Q 036770 451 DNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLS---GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRD 527 (1061)
Q Consensus 451 d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~---~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~ 527 (1061)
|..+ ++.+..++..+.+..++.+++.+.+. +...+|...|++||++.+|++.+.+. +++.+++.+..
T Consensus 443 diSD---------~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t-~~~~i~rl~~~ 512 (982)
T KOG2022|consen 443 DISD---------LLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET-ESTWIPRLFET 512 (982)
T ss_pred HHHH---------HHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc-hhHHHHHHHHh
Confidence 8754 44555555567777788888887762 24567999999999999999998754 67777777775
Q ss_pred HHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccc
Q 036770 528 LLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQ 607 (1061)
Q Consensus 528 Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~ 607 (1061)
..+..-. +.+ +-..++.+.++|.|+.|+..||.+|.+.++.||.++|+ ++....|..++.++|+.|+.++.+
T Consensus 513 ~asik~S---~~n-~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~p-- 584 (982)
T KOG2022|consen 513 SASIKLS---APN-PQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDP-- 584 (982)
T ss_pred ccccccc---cCC-hhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCch--
Confidence 4443332 222 33334467799999999999999999999999999986 456778888899999999999975
Q ss_pred cCCCchHHHHHHHhHHHhhh--cCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCC
Q 036770 608 VGENEPFVSELLSGLATTVA--DLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKD 685 (1061)
Q Consensus 608 ~~e~~p~l~~il~~l~~~~~--~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d 685 (1061)
|.+.++..+..... ...+.++.++|.+||+++++.. ++.+.+|+.+|+.|+.+.++.++.. + ..+
T Consensus 585 ------y~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~il~qle~~l~~---~---i~~ 651 (982)
T KOG2022|consen 585 ------YADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPILSQLEINLAP---G---IDD 651 (982)
T ss_pred ------HHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHHHHHHHHhhcC---C---CCC
Confidence 99999988887643 5567889999999999999998 6677899999999999988765432 2 257
Q ss_pred HHHHHHHHHHHhHHHHHHhhhChh--------------h------HHHHHHH---HHHHHHHHHHHHHHHHHhHhcCCC-
Q 036770 686 QDVIRTVLNILQTNTSVASALGTF--------------F------LSQISVI---FLDMLNVYKMYSELISSSISSGGP- 741 (1061)
Q Consensus 686 ~~~~~~i~~il~~~~~i~~~~~~~--------------f------~~~~~~i---~~~ll~~y~~~~~~i~~~~~~~g~- 741 (1061)
++...++++.+.+.+.++.++-.+ + ...+.++ +..+++.|-..+++++..+..++.
T Consensus 652 ~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~ 731 (982)
T KOG2022|consen 652 QENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKG 731 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhc
Confidence 888888999999998887754311 0 0111222 223334444444444433322111
Q ss_pred -Cccchhh-hHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhh-hc-cCCCChHHHHHHHHH
Q 036770 742 -FASKTSY-VKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKY-KG-AMIDDVPRIFEAIFQ 817 (1061)
Q Consensus 742 -~~~~~~~-~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~-~~-~~~~~l~~i~~~l~~ 817 (1061)
.....++ ...+..+. .++-+|. +.|. ...+.+..+++..+ +. .+.+.++..+...|+
T Consensus 732 v~~~~~sF~~p~l~~l~----~Fi~r~~------------~~~~---a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q 792 (982)
T KOG2022|consen 732 VRSLLTSFPEPMLPSLC----PFIVRFL------------TSCL---AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQ 792 (982)
T ss_pred cccccccchhhhHHHHH----HHHHHhc------------cchH---HHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 1111111 11111111 1111111 1111 23466666665443 33 467888999999999
Q ss_pred HhHHhhhhcc-CCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHH-HHHHHhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 818 CTLEMITKNF-EDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMD-SIIWAFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 818 ~tl~~i~~~~-~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
.++-++.+.. .++||+...||.+++.++++.|..+... ..++..++. ++..+++.+++-..+.+.+|+..++...++
T Consensus 793 ~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~-~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 793 QSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPS-MLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccc-hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 9998888654 9999999999999999999998866442 236666666 999999999999999999999999887766
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHH
Q 036770 896 --SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIK 973 (1061)
Q Consensus 896 --~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 973 (1061)
.+...++....+..++-.++..+.....++..+.-+++|..+.+ .+..-.+.|+.+
T Consensus 872 ~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~----------------------k~~se~r~wl~~ 929 (982)
T KOG2022|consen 872 HDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLALNA----------------------KFFSETRTWLKA 929 (982)
T ss_pred chhHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHH----------------------hhhHHHHHHHHH
Confidence 35567888888999999999999998889988888888864333 234456899999
Q ss_pred Hhh-ccCC--CCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhccc
Q 036770 974 LLG-TSFP--NMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSA 1020 (1061)
Q Consensus 974 ~l~-~~fp--~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~ 1020 (1061)
.|. ..|| +++++++..|+..+++.+++++.|++++..|...+|...|
T Consensus 930 ~lq~~gfPs~~~s~e~k~rf~t~llrer~n~R~~k~~il~~~L~~~~l~~ 979 (982)
T KOG2022|consen 930 VLQIPGFPSAGVSNEIKSRFVTSLLRERGNKRNFKQQILEFNLACTGLPN 979 (982)
T ss_pred HhcCCCCCcccCChHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCC
Confidence 996 7899 5899999999999999999999999999999999999866
|
|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=447.68 Aligned_cols=302 Identities=55% Similarity=0.954 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhh---------------
Q 036770 713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG--------------- 777 (1061)
Q Consensus 713 ~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~--------------- 777 (1061)
|++.||++++++|+.+|+.|...++..|..++++|.+|.||.+||+|++++++|+++.++++.+.
T Consensus 1 Q~~~i~~d~l~lY~~~s~~i~~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY 80 (319)
T PF08767_consen 1 QLGRIYLDMLNLYRAYSQIISQAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDY 80 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999998755442
Q ss_pred hcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCCh
Q 036770 778 KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSS 857 (1061)
Q Consensus 778 ~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~ 857 (1061)
+.+.|++|+|++|++++++|.++++.+.+.++.|++.+|+||++||++|+++|||||.+||+|+++++++||..++.+|+
T Consensus 81 ~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~ 160 (319)
T PF08767_consen 81 QNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPP 160 (319)
T ss_dssp HHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-H
T ss_pred hcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCH
Confidence 23899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHH
Q 036770 858 QQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA--SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQ 935 (1061)
Q Consensus 858 ~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~ 935 (1061)
++|+.++++++||++|++|+|++.||+++.++++++.. ++.+++||++||..++.++|.++||+.|++||+.|+.+|.
T Consensus 161 ~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~ 240 (319)
T PF08767_consen 161 EQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILS 240 (319)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999976 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhh
Q 036770 936 HLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQS 1015 (1061)
Q Consensus 936 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~ 1015 (1061)
.++.+++.|.+..|++++ +..|.+++.+|+.++|.+.||+++++|+..|+.+|++.++|..+||+++|||++++
T Consensus 241 ~Lf~~ve~~~i~~~l~~~------~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~ 314 (319)
T PF08767_consen 241 NLFRLVESGSIQVPLFDP------GMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQL 314 (319)
T ss_dssp HHHHHHHTT-SSSSSSST------TT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccccccCC------CCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 999999999999999982 35899999999999999999999999999999999999999999999999999999
Q ss_pred hhccc
Q 036770 1016 KEFSA 1020 (1061)
Q Consensus 1016 k~~~~ 1020 (1061)
|||+|
T Consensus 315 kef~g 319 (319)
T PF08767_consen 315 KEFSG 319 (319)
T ss_dssp TSTTT
T ss_pred hhccC
Confidence 99987
|
CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D. |
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=414.74 Aligned_cols=546 Identities=18% Similarity=0.279 Sum_probs=434.3
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhh
Q 036770 35 TAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREE 114 (1061)
Q Consensus 35 ~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~ 114 (1061)
.+|..||++||+|+++|.+|..+|+...+.++.+||+|++++||++.++.+|+.+..++|+++++++......+
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~------ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHP------ 75 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCC------
Confidence 47999999999999999999999988788899999999999999999999999999999999999999875433
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH
Q 036770 115 RLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQ 194 (1061)
Q Consensus 115 ~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~ 194 (1061)
..++++++.++|.++.+. ..|.+.+.++++..++.+......|++|+++|||+.+.. ......||.++.+.+....+
T Consensus 76 ~~i~tQL~vavA~Lal~~--~~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~-~~~~a~Rr~e~~~~l~~~~~ 152 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM--PEWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIR-LTVGANRRHEFIDELAAQVS 152 (559)
T ss_pred chHHHHHHHHHHHHHHHh--HhhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchh-hhhhhhhHHHHHHHHHHhHH
Confidence 268999999999999999 589999999999998876667789999999999997753 34667899999999999999
Q ss_pred HHHHHHHHHHhhcCc--HHHHHHHHHHHHhccc--ccCcchhcch-hhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcc
Q 036770 195 LIHELCLYVLSASQR--TDLIRATLSTLHAFLS--WIPLGYIFES-PLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDF 269 (1061)
Q Consensus 195 ~I~~~~~~~L~~~~~--~~l~~~~L~~l~~~l~--wi~~~~i~~~-~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~ 269 (1061)
.++..+..+++++.. ......+|+|++||.. -.|.+.+.+. +++..+|..+++..+.+.|.+|++.++...-...
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~ 232 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRS 232 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhh
Confidence 999999999998643 5678999999999999 6888988887 9999999999999999999999999987421100
Q ss_pred hHHHHHH-HHHHHHHHHHhhCCCCCChhhhhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 036770 270 YNVQYVN-MYNVFMVQLQTILPPTTNIPEAYA-HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLIN 347 (1061)
Q Consensus 270 ~~~~~~~-~f~~~l~~l~~~l~~~~~l~~~~~-~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~ 347 (1061)
-...+.. +|.. ..+ +...|+ ....+|.+-..++|++|+.+|+.+...+-..|+ ....+++.++.
T Consensus 233 ~~~~~~~~l~~~-----v~~------L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~---~~l~~vellLl 298 (559)
T KOG2081|consen 233 EGLPLAAILFIG-----VII------LETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPE---EFLRIVELLLL 298 (559)
T ss_pred ccCchhHHHhcc-----ccc------cchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCC---cchhHHHHHHH
Confidence 0000111 1100 012 233444 345577788899999999999997554443332 12355688999
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHh
Q 036770 348 ISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICR 427 (1061)
Q Consensus 348 ~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~k 427 (1061)
++.++|.|+.+.+|.||+.+.+.++..+. ...+.+|+|++.+++..+.+|
T Consensus 299 ~~~h~~~evie~SF~fW~~lse~l~~~~~------------------------------~~~~~~frpy~~rLvs~l~~h 348 (559)
T KOG2081|consen 299 VAGHNDTEVIEASFNFWYSLSEELTLTDD------------------------------DEALGIFRPYFLRLVSLLKRH 348 (559)
T ss_pred hccCCchhhhhhhHHhhhhhHHHHhcccc------------------------------HHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999998874321 345668999999999999999
Q ss_pred hCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHh-cCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHH
Q 036770 428 MAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLS-HLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIG 506 (1061)
Q Consensus 428 m~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~-~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~alg 506 (1061)
.++|++....- |+...|.+|+- .+.+.+...+ -++.+.+.+.+..++.+ +..+|+..||++|.+.
T Consensus 349 ~qlp~~~~~l~-Ee~~~f~~fR~---------~v~dvl~Dv~~iigs~e~lk~~~~~l~e----~~~~We~~EAaLF~l~ 414 (559)
T KOG2081|consen 349 VQLPPDQFDLP-EEESEFFEFRL---------KVGDVLKDVAFIIGSDECLKQMYIRLKE----NNASWEEVEAALFILR 414 (559)
T ss_pred ccCCCccccCc-cchhHHHHHHH---------HHHHHHHHHHHHhCcHHHHHHHHHHHcc----CCCchHHHHHHHHHHH
Confidence 99998544322 23344555542 2223333222 23456777888888765 3568999999999999
Q ss_pred hhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHH
Q 036770 507 SISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQD 586 (1061)
Q Consensus 507 sis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~ 586 (1061)
.+++.+.++ +++.+|+|++.+.++|++ .+.++++ ++ ++|+|++|+..||+++.+++++++.++... +++.
T Consensus 415 ~~~~~~~~~-e~~i~pevl~~i~nlp~Q-----~~~~~ts-~l-l~g~~~ew~~~~p~~le~v~~~~~~~~~~~--~~as 484 (559)
T KOG2081|consen 415 AVAKNVSPE-ENTIMPEVLKLICNLPEQ-----APLRYTS-IL-LLGEYSEWVEQHPELLEPVLRYIRQGLQLK--RLAS 484 (559)
T ss_pred HHhccCCcc-ccchHHHHHHHHhCCccc-----hhHHHHH-HH-HHHHHHHHHHhCcHHHHHHHHHHHHHhhhc--chhH
Confidence 999999866 789999999999999997 3445444 66 999999999999999999999999988764 3999
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchH
Q 036770 587 MACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPN 666 (1061)
Q Consensus 587 ~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~ 666 (1061)
.|+.+|.++|..|+.++..+- |++.+++..+..... +.+... +.+|++.+++.+|..+.+ ..++.+.++..
T Consensus 485 ~~a~~~~~i~~~c~~~~~~l~-----~~~~~l~~~l~~~~~--~~e~a~-l~~~~s~i~~~lp~~k~~-~~~~el~~~~l 555 (559)
T KOG2081|consen 485 AAALAFHRICSACRVQMTCLI-----PSLLELIRSLDSTQI--NEEAAC-LLQGISLIISNLPAHKAK-IALEELCEPQL 555 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhc--cHHHHH-HHHHHHHHHhcCCHhhhh-HHHHHHhhHHH
Confidence 999999999999999988643 466777777765533 355555 999999999999987654 47777776643
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=407.01 Aligned_cols=698 Identities=18% Similarity=0.312 Sum_probs=510.6
Q ss_pred CHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHcc--CCChHHHHHHHHHHHHHHhcccCCCCHH
Q 036770 14 DVALLDATVAAFY---GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN--SKNLNTKFFALQVLEGVIKYRWNALPVE 88 (1061)
Q Consensus 14 di~~l~~av~~ly---~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~--s~~~~~rffaa~~L~~~I~~~w~~l~~e 88 (1061)
+=+.+.|+++.+- +| |++.|+.++.-|++|+..|+.-.+...+|.+ +.+..+|-.|..+|+|.++-.|+.++++
T Consensus 8 ~e~~l~ql~~lLk~s~Sp-n~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~ 86 (885)
T KOG2023|consen 8 DEQGLQQLAQLLKNSQSP-NSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSE 86 (885)
T ss_pred cHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChH
Confidence 4344555554444 44 6778999999999999999999999999964 4467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHHHHHHHH
Q 036770 89 QRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAILKLLSE 167 (1061)
Q Consensus 89 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~E 167 (1061)
....+|..++.-+.. . ++.||+..+.++..|+...+-+.||+.++.+++.+.+.. +.|+..+..|..++|
T Consensus 87 ~~~yiKs~~l~~lgd----~-----~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGD----A-----SPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICE 157 (885)
T ss_pred HHHHHHHHHHhhccC----c-----hHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHh
Confidence 999999999887643 1 357899999999999999999999999999999998754 778889999999999
Q ss_pred HHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC-
Q 036770 168 EVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP- 246 (1061)
Q Consensus 168 Ev~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~- 246 (1061)
+...+ ++. .|. --|++ .+++.++++..
T Consensus 158 Dsa~~-------------------------------lds---------------~~~-~rpl~-----~mipkfl~f~~h 185 (885)
T KOG2023|consen 158 DSAQF-------------------------------LDS---------------DVL-TRPLN-----IMIPKFLQFFKH 185 (885)
T ss_pred hhHHH-------------------------------Hhh---------------hcc-cCchH-----HhHHHHHHHHhC
Confidence 74331 000 000 00222 23444454433
Q ss_pred -CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 036770 247 -MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHI 325 (1061)
Q Consensus 247 -~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~ 325 (1061)
+|.+|..|+.|++.++-....+ +...+-+ .++ ..|.-++++|++..+++|+-++-+.+-+.
T Consensus 186 ~spkiRs~A~~cvNq~i~~~~qa-l~~~iD~----Fle-------------~lFalanD~~~eVRk~vC~alv~Llevr~ 247 (885)
T KOG2023|consen 186 PSPKIRSHAVGCVNQFIIIQTQA-LYVHIDK----FLE-------------ILFALANDEDPEVRKNVCRALVFLLEVRP 247 (885)
T ss_pred CChhHHHHHHhhhhheeecCcHH-HHHHHHH----HHH-------------HHHHHccCCCHHHHHHHHHHHHHHHHhcH
Confidence 5678888888888877654322 1111111 111 12222456788999999999999888876
Q ss_pred HHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhh
Q 036770 326 RVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQ 405 (1061)
Q Consensus 326 ~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 405 (1061)
..+. |+..+++ +||+..+.-.|++|+..+.|||..+++. |
T Consensus 248 dkl~--phl~~Iv----eyML~~tqd~dE~VALEACEFwla~aeq--------p-------------------------- 287 (885)
T KOG2023|consen 248 DKLV--PHLDNIV----EYMLQRTQDVDENVALEACEFWLALAEQ--------P-------------------------- 287 (885)
T ss_pred Hhcc--cchHHHH----HHHHHHccCcchhHHHHHHHHHHHHhcC--------c--------------------------
Confidence 6554 3444444 9999998888889999999999999853 1
Q ss_pred hhhhhhhhHHhhHHHHHHHHHhhCCCccccc-cc-cCCchhH--Hh------h---------------------hcch--
Q 036770 406 LLQRRQLYAVPLSKLRMLMICRMAKPEEVLI-VE-DENGNIV--RE------T---------------------MKDN-- 452 (1061)
Q Consensus 406 ~~~~~~~~~~~l~~L~~~li~km~~p~e~~~-~~-~d~~e~~--~e------~---------------------~~d~-- 452 (1061)
..+.+..|++.+++++++.+|+|.++..+ .. +||++.+ || + ..|.
T Consensus 288 --i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 288 --ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred --CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 12335688999999999999999875433 21 1111100 00 0 0111
Q ss_pred -hhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhC-CCChhHHhHHHHHHHHHHHH
Q 036770 453 -DVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISG-SMMEEQENRFLVMVIRDLLN 530 (1061)
Q Consensus 453 -~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~-~~~~~~e~~~l~~vi~~Ll~ 530 (1061)
.+|+++++...+|..++++.++++..++++.|+..+.. ..|...|+...|+|+||+ ||..- ..+++.+++.|++
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~--~p~LpeLip~l~~ 441 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGF--VPHLPELIPFLLS 441 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhc--ccchHHHHHHHHH
Confidence 13899999999999999999999999999999887643 589999999999999995 56433 5789999999999
Q ss_pred hhhhhcCCcchHHHHHhHHHHhccchHHHHH--hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhccccccc
Q 036770 531 LCEMTKGKDNKAVIASNIMYVVGQYPRFLRA--HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQV 608 (1061)
Q Consensus 531 l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~--~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~ 608 (1061)
+... .++.|++-.+|+++||+.|+.. +.+|+.+++.-|+..+-+++.+||++||.+|..+-+.....+++
T Consensus 442 ~L~D-----KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp--- 513 (885)
T KOG2023|consen 442 LLDD-----KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVP--- 513 (885)
T ss_pred Hhcc-----CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHH---
Confidence 8875 6788899899999999999865 34799999999999777888999999999999999998888885
Q ss_pred CCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHH
Q 036770 609 GENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDV 688 (1061)
Q Consensus 609 ~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~ 688 (1061)
|++.|+.++....+....++...+|+|||.+...++..-.+..|++.||.|+.++|+.+- | .|+
T Consensus 514 -----~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls-----d----~DK-- 577 (885)
T KOG2023|consen 514 -----YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS-----D----SDK-- 577 (885)
T ss_pred -----HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC-----c----ccc--
Confidence 999999999888888888888999999999999887655557899999999999998642 1 233
Q ss_pred HHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHh
Q 036770 689 IRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLD 768 (1061)
Q Consensus 689 ~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~ 768 (1061)
.+..+|+|++++++++|.+|.|+..++|...+.+.+... . ....
T Consensus 578 --dLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~-------------------------------q---~~~~ 621 (885)
T KOG2023|consen 578 --DLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTL-------------------------------Q---LLAK 621 (885)
T ss_pred --hHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH-------------------------------H---HHHh
Confidence 489999999999999999999998877654433322111 1 1111
Q ss_pred hCCChhhhhhcCCCC-cchHHHHHHHHHHHHhhhccCCCChH--HHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHH
Q 036770 769 KAEDQPQIGKQNVPD-ARESEVLSLFATIINKYKGAMIDDVP--RIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIA 845 (1061)
Q Consensus 769 ~~~~~~~l~~~~~~~-~r~~~~L~l~~~li~~~~~~~~~~l~--~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~ 845 (1061)
...+.. + ..|+ ...-..|.+++.++..+|+.+.+.+. .+.+.+++|.. +.-||+|++.|.|+..++
T Consensus 622 ~~~~~~-~---~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~-------D~~peVRQS~FALLGDlt 690 (885)
T KOG2023|consen 622 VQQDPT-V---EAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ-------DEVPEVRQSAFALLGDLT 690 (885)
T ss_pred ccCCcc-c---cCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc-------cCChHHHHHHHHHHHHHH
Confidence 111110 1 1121 11234699999999999998877664 57777777754 578999999999999999
Q ss_pred hhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Q 036770 846 THCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVL 918 (1061)
Q Consensus 846 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 918 (1061)
+.||+.+.. .+..++--+..-+...+..++..|+-.+.++-...+.+. . .|...++...+.++
T Consensus 691 k~c~~~v~p----~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~----~~v~~vl~~L~~ii 753 (885)
T KOG2023|consen 691 KACFEHVIP----NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--K----QYVSPVLEDLITII 753 (885)
T ss_pred HHHHHhccc----hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--h----hHHHHHHHHHHHHh
Confidence 999887642 233333333344444555566666666666654444221 1 44455555555544
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=302.03 Aligned_cols=646 Identities=17% Similarity=0.259 Sum_probs=443.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcCcc--cHHHHHHHHccC-CChHHHHHHHHHHHHHHh-----------cccCCCC
Q 036770 21 TVAAFYGTGSKEERTAADQILRDLQNNPD--MWLQVVHILQNS-KNLNTKFFALQVLEGVIK-----------YRWNALP 86 (1061)
Q Consensus 21 av~~ly~~~~~~~r~~A~~~L~~fq~s~~--aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~-----------~~w~~l~ 86 (1061)
++....+| |+..|++|+++|.+++...- ......++|.+. +++.+|..|..+|||.+. .||..++
T Consensus 6 ~le~tlSp-D~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~ 84 (859)
T KOG1241|consen 6 LLEKTLSP-DQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLP 84 (859)
T ss_pred HHHHHcCC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCC
Confidence 33334455 66689999999999999763 444556777654 467899999999999885 5899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccCCh--hHHHHHHHHHH
Q 036770 87 VEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKTSE--TICENCMAILK 163 (1061)
Q Consensus 87 ~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~~~--~~~~~~L~iL~ 163 (1061)
.|.|+.+|+.++..+.... +...+-.++++|.|+..+-|+ .||++|..+++.....+ ...+..|+.++
T Consensus 85 ~e~reqVK~~il~tL~~~e---------p~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealG 155 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPE---------PRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALG 155 (859)
T ss_pred HHHHHHHHHHHHHHcCCCC---------CCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 9999999999999886421 123356889999999999997 79999999999987653 35788999999
Q ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHhcccccCcchhcc---hhhHH
Q 036770 164 LLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS-QRTDLIRATLSTLHAFLSWIPLGYIFE---SPLLE 239 (1061)
Q Consensus 164 ~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~-~~~~l~~~~L~~l~~~l~wi~~~~i~~---~~ll~ 239 (1061)
.+||++.- + .+.+....|+.-+.+.+.+. ++..++-++++||-.-+.+...++-.+ +-+++
T Consensus 156 yice~i~p---e------------vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq 220 (859)
T KOG1241|consen 156 YICEDIDP---E------------VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ 220 (859)
T ss_pred HHHccCCH---H------------HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeee
Confidence 99998621 1 23346677777777777664 456788899999998887765432211 46777
Q ss_pred HHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHH
Q 036770 240 TLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFF 317 (1061)
Q Consensus 240 ~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~ 317 (1061)
.++...+ +.+++.+|+.||+.|+++ |++.+. . |+.. +.|
T Consensus 221 vvcEatq~~d~~i~~aa~~ClvkIm~L-----yY~~m~----------------------~----------yM~~-alf- 261 (859)
T KOG1241|consen 221 VVCEATQSPDEEIQVAAFQCLVKIMSL-----YYEFME----------------------P----------YMEQ-ALF- 261 (859)
T ss_pred eeeecccCCcHHHHHHHHHHHHHHHHH-----HHHHHH----------------------H----------HHHH-HHH-
Confidence 7886654 456889999999999997 444211 0 1110 000
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHH---HhccCCCcccccccCCCCCCC
Q 036770 318 TSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFD---AHNNLENPAVTANMMGLPMPL 394 (1061)
Q Consensus 318 ~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~---~~~~~~~~~~~~~~~g~~~~~ 394 (1061)
..-+.-...++++|...++|||++++++-.+ ++...... |.+
T Consensus 262 -------------------------aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~-------~~~--- 306 (859)
T KOG1241|consen 262 -------------------------AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ-------GLP--- 306 (859)
T ss_pred -------------------------HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCC---
Confidence 1111112346778999999999999887544 22111100 111
Q ss_pred CchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHH
Q 036770 395 LPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHE 474 (1061)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~ 474 (1061)
| ....+-+..+..+++++++.+.+.+| ++|+ |+|+..+....||..+++...+
T Consensus 307 -p-----------~~~~fa~~a~~~v~P~Ll~~L~kqde-----~~d~----------DdWnp~kAAg~CL~l~A~~~~D 359 (859)
T KOG1241|consen 307 -P-----------SSKYFARQALQDVVPVLLELLTKQDE-----DDDD----------DDWNPAKAAGVCLMLFAQCVGD 359 (859)
T ss_pred -c-----------hhhHHHHHHHhHhhHHHHHHHHhCCC-----Cccc----------ccCcHHHHHHHHHHHHHHHhcc
Confidence 1 12334466788899999999988664 2221 2367778889999999999899
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
++...+++.+.+.+. +.+|++.|++..++|||.+...++.-+..+++.++.++++..+ +...+..+..|++||
T Consensus 360 ~Iv~~Vl~Fiee~i~--~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D-----~sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQ--NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD-----PSLWVKDTAAWTLGR 432 (859)
T ss_pred cchhhhHHHHHHhcC--CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC-----chhhhcchHHHHHHH
Confidence 999999999987764 4689999999999999999877776678888888888876653 455666778899999
Q ss_pred chHHHHH---hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhccccc-ccCCCchHHHHHHHhHHHhhhcCC
Q 036770 555 YPRFLRA---HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIV-QVGENEPFVSELLSGLATTVADLE 630 (1061)
Q Consensus 555 y~~~l~~---~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~-~~~e~~p~l~~il~~l~~~~~~l~ 630 (1061)
.++++.. |..++.+++.-+..++++ +|.|...+|++|..+++.|....+.. +.....||++.|+..+-..+.+.+
T Consensus 433 I~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d 511 (859)
T KOG1241|consen 433 IADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD 511 (859)
T ss_pred HHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc
Confidence 9998853 677999999999999986 69999999999999999999877654 333455899999999987776544
Q ss_pred ---cchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHH-HHHHhHHHHHHhhh
Q 036770 631 ---PHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTV-LNILQTNTSVASAL 706 (1061)
Q Consensus 631 ---~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i-~~il~~~~~i~~~~ 706 (1061)
...|...|||++-+|...|.+- ...+..+......++++.++.... ...|.+....+ ..++.++.++-+.+
T Consensus 512 gnqsNLR~AAYeALmElIk~st~~v--y~~v~~~~l~il~kl~q~i~~~~l---~~~dr~q~~eLQs~Lc~~Lq~i~rk~ 586 (859)
T KOG1241|consen 512 GNQSNLRSAAYEALMELIKNSTDDV--YPMVQKLTLVILEKLDQTISSQIL---SLADRAQLNELQSLLCNTLQSIIRKV 586 (859)
T ss_pred cchhhHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHHHHHHHHHHHhc---cHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 4458889999999999988753 234555555556666666652111 11344433344 34456777777778
Q ss_pred ChhhHHHHHHHHHHHHHHHHH-HHHHHHHh-HhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCc
Q 036770 707 GTFFLSQISVIFLDMLNVYKM-YSELISSS-ISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDA 784 (1061)
Q Consensus 707 ~~~f~~~~~~i~~~ll~~y~~-~~~~i~~~-~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~ 784 (1061)
++.+.+....++.-++.++.. -+..+... +-+. .-.+..+++...+..++|..-. ...+- +..+.
T Consensus 587 ~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV---------~tl~~~Lg~~F~kym~~f~pyL--~~gL~--n~~e~ 653 (859)
T KOG1241|consen 587 GSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAV---------STLAESLGKGFAKYMPAFKPYL--LMGLS--NFQEY 653 (859)
T ss_pred cccchhHHHHHHHHHHHHHcCCccccchHHHHHHH---------HHHHHHHhHhHHHHHHHHHHHH--HHHhh--cchHH
Confidence 877766667777766666654 11111110 0000 0111223333222222221100 00000 11111
Q ss_pred ch-HHHHHHHHHHHHhhhccCCCChHHHHHHHHHH
Q 036770 785 RE-SEVLSLFATIINKYKGAMIDDVPRIFEAIFQC 818 (1061)
Q Consensus 785 r~-~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~ 818 (1061)
.. .....+.+.+...++.++.|+.+.++..+.++
T Consensus 654 qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 11 24688889999999999999888888887766
|
|
| >KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-29 Score=272.51 Aligned_cols=805 Identities=16% Similarity=0.280 Sum_probs=504.5
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGM 93 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l 93 (1061)
++++++..+..+|.+.|+.+|.+|++-|.+|..+|++.+.|.-+|.++..++....|+..|-..+... ..||.++|..|
T Consensus 3 sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldi 81 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDI 81 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999888765 37999999999
Q ss_pred HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC------ccchhHHHHHHHccCC-hhHHHHHHHHHHHHH
Q 036770 94 KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA------RWRSFIPDLVAAAKTS-ETICENCMAILKLLS 166 (1061)
Q Consensus 94 r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~------~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~ 166 (1061)
|+++++++.. ..|+. +++++..+++.+|.+-|..|-+ .+.+.+.++...++.+ ..+|..++.||..|.
T Consensus 82 r~Yilnylat--~~Pk~---~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 82 RNYILNYLAT--GAPKL---APFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHhc--CCCCc---ccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 9999999986 33432 5799999999999999999975 3567888888888765 678999999999999
Q ss_pred HHHhccCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcC-----c-------HHHHHHHHHHHH-hcccc------
Q 036770 167 EEVFDFSRGEMTQQKIKELKQSLN-SEFQLIHELCLYVLSASQ-----R-------TDLIRATLSTLH-AFLSW------ 226 (1061)
Q Consensus 167 EEv~~~~~~~l~~~r~~~l~~~l~-~~~~~I~~~~~~~L~~~~-----~-------~~l~~~~L~~l~-~~l~w------ 226 (1061)
.|+...+ ...+..+.+++-..+| +..-+||.+-.+.|.... + ..+.+.+|+|+. .|+.-
T Consensus 157 qemN~~~-~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEss 235 (1082)
T KOG1410|consen 157 QEMNQAD-GMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESS 235 (1082)
T ss_pred HHhhCCC-CCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccc
Confidence 9986532 2334566667777788 567789988888887642 1 235667888876 45441
Q ss_pred -------cCcc---hhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCC
Q 036770 227 -------IPLG---YIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTN 294 (1061)
Q Consensus 227 -------i~~~---~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~ 294 (1061)
||.+ .+.++..++++|++.+ .|++.+.|++||+.+++.+.+-..+..-.....+.++-+..++.....
T Consensus 236 ed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~ 315 (1082)
T KOG1410|consen 236 EDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQG 315 (1082)
T ss_pred ccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcC
Confidence 2221 2445789999998876 467899999999999997532111112223333344444454433222
Q ss_pred hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhcc-C-hhhHHHHHHHHHHHHHHHHH
Q 036770 295 IPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYV-D-ETEVFKVCLDYWNSFVLELF 372 (1061)
Q Consensus 295 l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~-~-d~ei~~~~l~fW~~l~~~l~ 372 (1061)
+.+ ...--+|++-+|++-+.+--.-+..++..|+...++- ++.+.-..+ + ........+.+|.+++...
T Consensus 316 LsD-----~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiA---eFTv~SLq~wefa~nSvyyLlt~WqRmvaSV- 386 (1082)
T KOG1410|consen 316 LSD-----PANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIA---EFTVTSLQHWEFAPNSVYYLLTLWQRMVASV- 386 (1082)
T ss_pred CCC-----cchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHH---HHHHHHHHhhhcccchhHHHHHHHHHHHhcC-
Confidence 221 0111234444444444433322345566665544331 333322111 1 1234567889999998653
Q ss_pred HHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcch
Q 036770 373 DAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDN 452 (1061)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~ 452 (1061)
|+..... |..++.|. +....-| +.+++-.+ .+.-|++. |+ =+.|+
T Consensus 387 ------Pyvk~~~----------phlLd~y~---PeIt~af--i~SRl~sV---~~ivrd~~---d~--------PLdd~ 431 (1082)
T KOG1410|consen 387 ------PYVKNTE----------PHLLDTYC---PEITKAF--ITSRLQSV---EIIVRDGL---DD--------PLDDT 431 (1082)
T ss_pred ------CcccCCC----------hHHHhhhc---HHHHHHH--HHHHhhhh---heecccCC---CC--------cchhh
Confidence 4422111 33444442 1111111 11111111 11112211 10 12233
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhcc--------C--CccccchhhH-H---HHHHHhhhCC-----CC
Q 036770 453 DVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLS--------G--EDWTWNNLNT-L---CWAIGSISGS-----MM 513 (1061)
Q Consensus 453 ~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~--------~--~~~~w~~le~-~---~~algsis~~-----~~ 513 (1061)
+.+. ..-++|.++++..++.|...+.+..++... + ...+-.-.|. + +|.+|.+.|. -.
T Consensus 432 ~~~~---q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~St 508 (1082)
T KOG1410|consen 432 GAVQ---QQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATST 508 (1082)
T ss_pred HHHH---HHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceeccccc
Confidence 2221 234566677777777777666665554321 1 1122222332 3 4456665542 11
Q ss_pred hhH---HhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHH-HH--------------------HhHHHHHHH
Q 036770 514 EEQ---ENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRF-LR--------------------AHWKFLKTV 569 (1061)
Q Consensus 514 ~~~---e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~-l~--------------------~~~~~L~~v 569 (1061)
++. +.+...+|++ |.++.++..+..-+.++--.+++.+.++.+- +. .+...|..+
T Consensus 509 d~~d~mDgEL~arvlq-l~nlmdsr~~~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~vi 587 (1082)
T KOG1410|consen 509 DEHDAMDGELSARVLQ-LVNLMDSRLPLKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVI 587 (1082)
T ss_pred chhhhhhhHHHHHHHH-HHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 111 2355566666 5666665544323333333355555544321 11 134567888
Q ss_pred HHHHHHhh---hcCChhHHHHHHHHHHHHHHH--hhhccc---------ccccCCCchHHHHHHHhHHHhhhcC-CcchH
Q 036770 570 VNKLFEFM---HETHPGVQDMACDTFLKIVQK--CKRKFV---------IVQVGENEPFVSELLSGLATTVADL-EPHQI 634 (1061)
Q Consensus 570 l~~L~~~~---~~~~~~v~~~A~~~f~~i~~~--c~~~l~---------~~~~~e~~p~l~~il~~l~~~~~~l-~~~~~ 634 (1061)
+.|++.-+ .. ++.|-+.....|..++-. ..++++ +.+..|..||+..- .++ +...|
T Consensus 588 v~KI~TNLK~w~~-~e~vi~~tLslf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~--------~~~~~~r~R 658 (1082)
T KOG1410|consen 588 VGKILTNLKYWGR-NEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGIN--------IDLQDMRCR 658 (1082)
T ss_pred HHHHHhhcccccC-CchHHHHHHHHHHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccC--------ccchhhhhH
Confidence 88888744 33 345778888888777643 223333 33344444554221 111 35679
Q ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhh--ChhhHH
Q 036770 635 HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASAL--GTFFLS 712 (1061)
Q Consensus 635 ~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~--~~~f~~ 712 (1061)
.++|+|+|.++-.--.++ +..++..|.|+...++.+++..+.| .+..+++++.++.+.|.+.++|-+. ...|..
T Consensus 659 TTFY~al~rLl~~d~sed--e~~fe~fm~PLt~~fe~v~~~~~nn--~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~ 734 (1082)
T KOG1410|consen 659 TTFYTALTRLLMVDLSED--EDMFERFMLPLTDAFEGVLQVFQNN--CFEEEQVKRILIGLCRDLRGIAFASNTKTSYQM 734 (1082)
T ss_pred hHHHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHhhhhhhhhccchHHHH
Confidence 999999999886533322 3578889999999999888766444 2456667777889999888776554 456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHH--------------------HHHHHHHHHHHHHHhhCCC
Q 036770 713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLR--------------------SVKRETLKLIETFLDKAED 772 (1061)
Q Consensus 713 ~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~--------------------~~~~~il~ll~~~i~~~~~ 772 (1061)
-++++||..+.+.+..- +. | .|.....+|..|.|. .+.|+..+++..|.+++-.
T Consensus 735 LFdWmYP~~mpllq~~V---e~--W-~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~ 808 (1082)
T KOG1410|consen 735 LFDWMYPEYMPLLQRAV---EK--W-YGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQ 808 (1082)
T ss_pred HHHHhhhhHHHHHHHHH---Hh--c-CCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhc
Confidence 78999998877765432 22 2 233334556655554 3456677777777776644
Q ss_pred hhhhhhcCCCCcchHHHHHHHHHHHHhhhccCC----------CChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHH
Q 036770 773 QPQIGKQNVPDARESEVLSLFATIINKYKGAMI----------DDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLR 842 (1061)
Q Consensus 773 ~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~----------~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~ 842 (1061)
+..+.++.....|...+--+++.+-..+.++.. .-+.+.++....-++++...|+.+|+.+.++||.|+.
T Consensus 809 Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~lsIp~sD~l~Y~Klsqsyy~llE 888 (1082)
T KOG1410|consen 809 LPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLLSIPHSDLLSYRKLSQSYYNLLE 888 (1082)
T ss_pred ccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHhhHHH
Confidence 443432211111222222334444444444322 2345555555555555556899999999999999999
Q ss_pred HHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 036770 843 AIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKN 892 (1061)
Q Consensus 843 ~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~ 892 (1061)
.+++.+...+.++++..|..++.|+.-|++.-+..++.+|+..+..+++-
T Consensus 889 ~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tY 938 (1082)
T KOG1410|consen 889 VLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTY 938 (1082)
T ss_pred HHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877654
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-26 Score=271.75 Aligned_cols=716 Identities=16% Similarity=0.234 Sum_probs=463.4
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGM 93 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l 93 (1061)
|...+++++..+.+| |+..|++|++.|+..-.++..-.....++..+.++++|.+||..+|..+.+.|+.|+.+.|+.|
T Consensus 2 ~~~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSP-DNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred chhHHHHHHHHhcCC-CchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 557899999999998 5558999999999666655577778889989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhcc
Q 036770 94 KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDF 172 (1061)
Q Consensus 94 r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~ 172 (1061)
|..|+..+.+.. ...||+|+|.++|.|++.+.|..||+.++-++++.++. +..++.++.||..+++-+..
T Consensus 81 ks~lL~~~~~E~--------~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~- 151 (1075)
T KOG2171|consen 81 KSSLLEIIQSET--------EPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN- 151 (1075)
T ss_pred HHHHHHHHHhcc--------chHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-
Confidence 999999988742 36799999999999999999999999999999999874 57899999999999997543
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCccchH
Q 036770 173 SRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRN 252 (1061)
Q Consensus 173 ~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~~~~~ 252 (1061)
. +..++..+..++.+++...+++ ++..+++++.+|+...+.+ +...+.+-.
T Consensus 152 ---~------------~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~----~~~~~~~~~--------- 202 (1075)
T KOG2171|consen 152 ---T------------LQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENN----KSEVDKFRD--------- 202 (1075)
T ss_pred ---c------------cchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccc----hHHHHHHHH---------
Confidence 1 1236778888999999887776 8899999999988765511 111111110
Q ss_pred HHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccch
Q 036770 253 LTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQ 332 (1061)
Q Consensus 253 ~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~ 332 (1061)
+...++..+...+ ..+|.+-....-..+.++++...+++.
T Consensus 203 ------------------------llP~~l~vl~~~i-------------~~~d~~~a~~~l~~l~El~e~~pk~l~--- 242 (1075)
T KOG2171|consen 203 ------------------------LLPSLLNVLQEVI-------------QDGDDDAAKSALEALIELLESEPKLLR--- 242 (1075)
T ss_pred ------------------------HhHHHHHHhHhhh-------------hccchHHHHHHHHHHHHHHhhchHHHH---
Confidence 1111111111111 112222233333444555554444442
Q ss_pred hhHHHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhh
Q 036770 333 ENISALLMGLEYLINISYVD--ETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRR 410 (1061)
Q Consensus 333 ~~~~~~~~~l~~ll~~~~~~--d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 410 (1061)
+.+...+++.+++.... |+.+=..+++|-..+.+.- | ...
T Consensus 243 ---~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A------------------------p-----------~~~ 284 (1075)
T KOG2171|consen 243 ---PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA------------------------P-----------AMC 284 (1075)
T ss_pred ---HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh------------------------H-----------HHh
Confidence 22334457777766544 3455567788888877641 1 111
Q ss_pred hhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHh-cCCHHhHHHHHHHHHHhhcc
Q 036770 411 QLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLS-HLDHEDTEKQMLKKLSKQLS 489 (1061)
Q Consensus 411 ~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~-~l~~~~~~~~i~~~L~~~~~ 489 (1061)
..+.++..+|+.+++.-|..-++...|.++|.+ .|.+.-.-|.....++..++ +|.+..+...+++.+...+.
T Consensus 285 k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~------ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~ 358 (1075)
T KOG2171|consen 285 KKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL------DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQ 358 (1075)
T ss_pred hhchhhhccHHHHHHHhcCCcccchhhcccccc------ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhc
Confidence 123445666776666655422222123221111 01110112445677788776 78888888888888887763
Q ss_pred CCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchH-----HHHHhHH
Q 036770 490 GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPR-----FLRAHWK 564 (1061)
Q Consensus 490 ~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~-----~l~~~~~ 564 (1061)
+.+|....|++-|+|+|++.-.... ..-++++++.+++...+ +.++|+-..+..+||.+. +-+.|.+
T Consensus 359 --S~~w~~R~AaL~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~D-----phprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 359 --STEWKERHAALLALSVIAEGCSDVM-IGNLPKILPIVLNGLND-----PHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred --CCCHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 3589999999999999997654332 44788899988776654 556666667789999744 3355666
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHH-hHHHhhhcCCcchHHHHHHHHhh
Q 036770 565 FLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLS-GLATTVADLEPHQIHTFYESVGH 643 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~-~l~~~~~~l~~~~~~~l~eaig~ 643 (1061)
.+++.+-.+++ ...+++|+..|+.++..+...|.+.... ||++.+++ .+......-++..+..+.-|||.
T Consensus 431 ~l~~aL~~~ld--~~~~~rV~ahAa~al~nf~E~~~~~~l~-------pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 431 RLPPALIALLD--STQNVRVQAHAAAALVNFSEECDKSILE-------PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIAS 501 (1075)
T ss_pred hccHHHHHHhc--ccCchHHHHHHHHHHHHHHHhCcHHHHH-------HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 66665555554 3346799999999999999999887665 79999998 66555555566778888999999
Q ss_pred hhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhC-hhhHHHHHHHHHHHH
Q 036770 644 MIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALG-TFFLSQISVIFLDML 722 (1061)
Q Consensus 644 li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~-~~f~~~~~~i~~~ll 722 (1061)
+..+.... ...|..++|..+.. ++++. .+.+...--...++|++.++.+.| ..|.|..+.+..-+.
T Consensus 502 vA~AA~~~--F~pY~d~~Mp~L~~----~L~n~-------~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~ 568 (1075)
T KOG2171|consen 502 VADAAQEK--FIPYFDRLMPLLKN----FLQNA-------DDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLL 568 (1075)
T ss_pred HHHHHhhh--hHhHHHHHHHHHHH----HHhCC-------CchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHH
Confidence 88776543 35789998886654 44433 122222223555889999999999 578887776665444
Q ss_pred HHHHHHHHHHHHhHhcCCCC--ccchhhhHHHHHHHHHHHHHHHHHHhhC-------CC-----hhhh--hh--------
Q 036770 723 NVYKMYSELISSSISSGGPF--ASKTSYVKLLRSVKRETLKLIETFLDKA-------ED-----QPQI--GK-------- 778 (1061)
Q Consensus 723 ~~y~~~~~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~il~ll~~~i~~~-------~~-----~~~l--~~-------- 778 (1061)
..- .+. ...+.+. -.-....|..+.+++...+++...+.-. ++ .... .+
T Consensus 569 ~~~--~~~-----~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~ 641 (1075)
T KOG2171|consen 569 ELQ--GSD-----QDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV 641 (1075)
T ss_pred hhc--ccc-----hhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence 321 000 0000000 0011223556666666555544433211 00 0000 00
Q ss_pred --cCC-------CC-cchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhc
Q 036770 779 --QNV-------PD-ARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHC 848 (1061)
Q Consensus 779 --~~~-------~~-~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~ 848 (1061)
.+. .. .........++.+....+..+.|++.+++. ++-+ ++ .+..|-.+|.++.+.+-.+++..
T Consensus 642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~-l~v~---~l--~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVE-LMVP---LL--KFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHH---HH--HhhhhhHHHHHHHHHHHHHHHHH
Confidence 000 00 011234556666666677778888888777 2211 11 22345568999888888877753
Q ss_pred hhHhhcCC---hHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHhccc
Q 036770 849 FPALIRLS---SQQLKLVMDSIIWAFRH-TERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 849 ~~~l~~~~---~~~~~~~~~~i~~~~~~-~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
--.....| ......++.+.+-++.. +++++.-..++.+.+.++..|.
T Consensus 716 ~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~ 766 (1075)
T KOG2171|consen 716 LKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGD 766 (1075)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCc
Confidence 33222333 23556666666666655 7888888888888888888874
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-23 Score=225.67 Aligned_cols=660 Identities=15% Similarity=0.166 Sum_probs=410.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCcc--cHHHHHHHHc-cCCChHHHHHHHHHHHHHHh-----------cccCCCCHHHHHH
Q 036770 27 GTGSKEERTAADQILRDLQNNPD--MWLQVVHILQ-NSKNLNTKFFALQVLEGVIK-----------YRWNALPVEQRDG 92 (1061)
Q Consensus 27 ~~~~~~~r~~A~~~L~~fq~s~~--aw~~~~~iL~-~s~~~~~rffaa~~L~~~I~-----------~~w~~l~~e~~~~ 92 (1061)
+| ||..|..|+..|.++++... .-....+.|. ..++++.|..|..+|+|.+. .+|..++.|.|+.
T Consensus 16 sp-D~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~q 94 (858)
T COG5215 16 SP-DPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQ 94 (858)
T ss_pred CC-CCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHH
Confidence 44 66689999999999998763 2334445554 45579999999999999886 5799999999999
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccCCh--hHHHHHHHHHHHHHHHH
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKTSE--TICENCMAILKLLSEEV 169 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~~~--~~~~~~L~iL~~l~EEv 169 (1061)
+|...+..+.+. .+ -+-+-.+++++.|+..+.|+ .||.++..++......+ +.....|.++...+|-.
T Consensus 95 vK~~al~aL~s~--ep-------r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~ 165 (858)
T COG5215 95 VKGMALRALKSP--EP-------RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE 165 (858)
T ss_pred HHHHHHHHhcCC--cc-------HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc
Confidence 999999888652 11 24477889999999999997 79999999999987653 33444788889888853
Q ss_pred hccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcc---hhhHHHHHhhCC
Q 036770 170 FDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE---SPLLETLLKFFP 246 (1061)
Q Consensus 170 ~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~---~~ll~~l~~~L~ 246 (1061)
+.+.+.+ ..-.-++.++...+.+..+..++.++|+||-.-+.++.-+.-.+ +-+++..+...+
T Consensus 166 ---~Pe~li~-----------~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq 231 (858)
T COG5215 166 ---APEDLIQ-----------MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQ 231 (858)
T ss_pred ---CHHHHHH-----------HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhcc
Confidence 1111111 12223455666666666677888999999987555444332111 467777776655
Q ss_pred --CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHH-HHHHHHHHHHHH
Q 036770 247 --MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQ-NLALFFTSFFKF 323 (1061)
Q Consensus 247 --~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~-~l~~l~~~~~~~ 323 (1061)
+.++..+|..||+.|+.+ |++. |. . +++ .++
T Consensus 232 ~~d~e~q~aafgCl~kim~L-----yY~f--------m~--------------~----------ymE~aL~--------- 265 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMML-----YYKF--------MQ--------------S----------YMENALA--------- 265 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHH-----HHHH--------HH--------------H----------HHHHHHH---------
Confidence 456889999999999886 3331 11 0 111 111
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHH---hccCCCcccccccCCCCCCCCchhhh
Q 036770 324 HIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDA---HNNLENPAVTANMMGLPMPLLPSVVD 400 (1061)
Q Consensus 324 ~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~---~~~~~~~~~~~~~~g~~~~~~~~~l~ 400 (1061)
.++.+....++++|...+.|||++++++-.+- .+..|. .| ..
T Consensus 266 -------------------alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe----~p------------~q 310 (858)
T COG5215 266 -------------------ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE----VP------------AQ 310 (858)
T ss_pred -------------------HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc----Cc------------hh
Confidence 22222335567789999999999998764321 111121 11 12
Q ss_pred hhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHH
Q 036770 401 GIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480 (1061)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i 480 (1061)
+|+ -.+....+++..|+ +-+.+..|. . + .|+|+..+....||...+++..+.+..-+
T Consensus 311 n~~----fa~aav~dvlP~lL----~LL~~q~ed--~---~----------~DdWn~smaA~sCLqlfaq~~gd~i~~pV 367 (858)
T COG5215 311 NHG----FARAAVADVLPELL----SLLEKQGED--Y---Y----------GDDWNPSMAASSCLQLFAQLKGDKIMRPV 367 (858)
T ss_pred hcc----hHHHHHHHHHHHHH----HHHHhcCCC--c---c----------ccccchhhhHHHHHHHHHHHhhhHhHHHH
Confidence 221 12222244444444 444433221 0 1 12356667788999998888777777767
Q ss_pred HHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH
Q 036770 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR 560 (1061)
Q Consensus 481 ~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~ 560 (1061)
+..+.+.+. ..+|+++|++..|+|||.....++.-..++++.++.+.++.. |+..-+.++..|++|+.++++.
T Consensus 368 l~FvEqni~--~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-----D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 368 LGFVEQNIR--SESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-----DSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred HHHHHHhcc--CchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-----cceeehhhHHHHHHHHHHHHHH
Confidence 777776553 468999999999999999887666667888999998887654 3556677878899999999987
Q ss_pred H--hH-HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcC--CcchHH
Q 036770 561 A--HW-KFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL--EPHQIH 635 (1061)
Q Consensus 561 ~--~~-~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l--~~~~~~ 635 (1061)
. +| .+|...+.+.+-++.+ +|.+...+|+++..++....+.- .++++-..||+..|++.+-..+... ++..|.
T Consensus 441 ~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~-~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~ 518 (858)
T COG5215 441 MIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAV-REVESFLAKFYLAILNALVKGTELALNESNLRV 518 (858)
T ss_pred HhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhh-ccccchhHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 5 34 3889999999988766 68899999999999987644322 2233444578888888776554322 455688
Q ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHH-HHHHhHHHHHHhhhChhhHHHH
Q 036770 636 TFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTV-LNILQTNTSVASALGTFFLSQI 714 (1061)
Q Consensus 636 ~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i-~~il~~~~~i~~~~~~~f~~~~ 714 (1061)
.+|+|+|.+|.-.|+.. ...+..+......++++.++-..+-. ..+|......+ .+++..+.++.+..+.+..+.-
T Consensus 519 s~fsaLgtli~~~~d~V--~~~~a~~~~~~~~kl~~~isv~~q~l-~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~ 595 (858)
T COG5215 519 SLFSALGTLILICPDAV--SDILAGFYDYTSKKLDECISVLGQIL-ATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE 595 (858)
T ss_pred HHHHHHHHHHhhcchhH--HHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH
Confidence 99999999999888743 34666666666677777665432111 11233333333 5666677777676665443332
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcc--hHHHHH
Q 036770 715 SVIFLDMLNVYKMY-SELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDAR--ESEVLS 791 (1061)
Q Consensus 715 ~~i~~~ll~~y~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r--~~~~L~ 791 (1061)
..++.-++.+.... +..+. |+. -.+....+..+.+ -++.|.+++.+. +...-....+ ...+..
T Consensus 596 D~lm~Lf~r~les~~~t~~~------~dV--~~aIsal~~sl~e----~Fe~y~~~fiPy--l~~aln~~d~~v~~~avg 661 (858)
T COG5215 596 DQLMELFIRILESTKPTTAF------GDV--YTAISALSTSLEE----RFEQYASKFIPY--LTRALNCTDRFVLNSAVG 661 (858)
T ss_pred HHHHHHHHHHHhccCCchhh------hHH--HHHHHHHHHHHHH----HHHHHHhhhhHH--HHHHhcchhHHHHHHHHH
Confidence 33333222222211 00000 000 0000111112222 233333333221 1100001111 134678
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHH
Q 036770 792 LFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIA 845 (1061)
Q Consensus 792 l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~ 845 (1061)
+.+.+...++.++.++-+.++..+.+|.- . ...+-|++-.-....+.|.
T Consensus 662 lvgdlantl~~df~~y~d~~ms~LvQ~ls----s-~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 662 LVGDLANTLGTDFNIYADVLMSSLVQCLS----S-EATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhc----C-hhhccccchHHHHHHHHHH
Confidence 88888888888888887777777776632 1 1233445544444444443
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-17 Score=188.65 Aligned_cols=577 Identities=17% Similarity=0.242 Sum_probs=337.6
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCC-ChHHHHHHHHHHHHHHhcccCC-------
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSK-NLNTKFFALQVLEGVIKYRWNA------- 84 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~-~~~~rffaa~~L~~~I~~~w~~------- 84 (1061)
+|.+.+.+++.+-.++ ||+.|+.|++.|+++++.|.....+.+|..... +..||.-|+..|||+|.+.|..
T Consensus 1 md~~~l~~~~~~T~d~-d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~ 79 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDS-DAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRP 79 (1010)
T ss_pred CChHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCc
Confidence 3677788888887777 588999999999999999999999999997665 4578999999999999999974
Q ss_pred --CCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHH
Q 036770 85 --LPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAI 161 (1061)
Q Consensus 85 --l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~i 161 (1061)
+++++|..+|+.++..+.+- +.++|..+..++..|++.+||..||++++-+-..+++++ +..-.+|.+
T Consensus 80 ~~I~e~dk~~irenIl~~iv~~---------p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~ 150 (1010)
T KOG1991|consen 80 FGIPEEDKAVIRENILETIVQV---------PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLC 150 (1010)
T ss_pred CCCChHHHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHH
Confidence 58899999999999998762 467999999999999999999999999999999998875 344456777
Q ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcHHHHHHHHHHHHhcccc-cCcchhcc---h
Q 036770 162 LKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS--QRTDLIRATLSTLHAFLSW-IPLGYIFE---S 235 (1061)
Q Consensus 162 L~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~--~~~~l~~~~L~~l~~~l~w-i~~~~i~~---~ 235 (1061)
|..|+.- ..+.+ ..+|+.+...+..-+|.|.+...+++... ...++.+..|+.+.+++.+ +|...+.. +
T Consensus 151 l~qL~k~-ye~k~----~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~ 225 (1010)
T KOG1991|consen 151 LYQLFKT-YEWKK----DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFT 225 (1010)
T ss_pred HHHHHHH-Hhhcc----ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHH
Confidence 7766552 22322 24577788888889999999999998764 3467889999999988875 44433222 3
Q ss_pred hhHHHHHhhCCCccchHHHHHHHHHHhcCcC--Ccc--h-H-HHHHHHHHHHHHHHHhhCCCCCChhhhhcC---CCcch
Q 036770 236 PLLETLLKFFPMPSYRNLTLQCLTEVGALNF--GDF--Y-N-VQYVNMYNVFMVQLQTILPPTTNIPEAYAH---GNSEE 306 (1061)
Q Consensus 236 ~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~--~~~--~-~-~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~---~~~~d 306 (1061)
.+++++...++-|-- .|.....+ ++. . . +|-. + .++.. ++ +.|.. ...+-
T Consensus 226 ~W~~l~l~i~~rpvP--------~E~l~~d~e~R~~~~wwK~KKWa-~--~~L~R---lf-------~Ryg~~~~~~~~y 284 (1010)
T KOG1991|consen 226 SWMELFLSILNRPVP--------VEVLSLDPEDRSSWPWWKCKKWA-L--HILNR---LF-------ERYGSPSLVVPEY 284 (1010)
T ss_pred HHHHHHHHHHcCCCC--------hhcccCChhhcccccchhhHHHH-H--HHHHH---HH-------HHhCCccccchhh
Confidence 455555544432100 00011100 000 0 0 0100 0 01111 11 11110 11122
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCccccc
Q 036770 307 QAFIQNLAL-FFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTA 385 (1061)
Q Consensus 307 ~~~~~~l~~-l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~ 385 (1061)
.+|.+.+.. ++..+.+.++++++.-.+ +. .-.+++-...+.|...-+..
T Consensus 285 ~~Fa~~f~~n~~~~ile~~lk~l~~~~~--~~-------------yls~rvl~~~l~fl~~~Vs~--------------- 334 (1010)
T KOG1991|consen 285 KEFAQMFLKNFAQGILEVFLKILEQWRQ--QL-------------YLSDRVLYYLLNFLEQCVSH--------------- 334 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cc-------------cCCHHHHHHHHHHHHHhccH---------------
Confidence 334443322 444444555555553221 00 00112222233332221110
Q ss_pred ccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHH-HHHHhhCCCcccc-ccccCCchhHHhh--------hcchhhH
Q 036770 386 NMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRM-LMICRMAKPEEVL-IVEDENGNIVRET--------MKDNDVL 455 (1061)
Q Consensus 386 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~-~li~km~~p~e~~-~~~~d~~e~~~e~--------~~d~~~~ 455 (1061)
...+...+|.+.-++. ++..-|.+-++.. .|++|-.|-.|.+ ..|+.+.
T Consensus 335 ---------------------~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~ 393 (1010)
T KOG1991|consen 335 ---------------------ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAAL 393 (1010)
T ss_pred ---------------------HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHH
Confidence 0111222333333222 2233344433332 3777766665543 1222211
Q ss_pred HHHHHHHHHHHHHhcCC----HHhHHHHHHHHHHhhcc--CCccccchhhHHHHHHHhhhCCCChh-----HHhHHHH-H
Q 036770 456 VQYKIMRETLIYLSHLD----HEDTEKQMLKKLSKQLS--GEDWTWNNLNTLCWAIGSISGSMMEE-----QENRFLV-M 523 (1061)
Q Consensus 456 ~ly~~~~~~L~~l~~l~----~~~~~~~i~~~L~~~~~--~~~~~w~~le~~~~algsis~~~~~~-----~e~~~l~-~ 523 (1061)
..+..++.-- -..+++.+.+.|.+... .+..+.+.-+.++..+|++++-+... .-..|+. -
T Consensus 394 -------~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 394 -------DFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred -------HHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 1111111111 12344556666664431 24456788899999999999644322 1123332 2
Q ss_pred HHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHHHhhhc
Q 036770 524 VIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH-ETHPGVQDMACDTFLKIVQKCKRK 602 (1061)
Q Consensus 524 vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~-~~~~~v~~~A~~~f~~i~~~c~~~ 602 (1061)
|++.+ +-+ --..++-.+|++++|++-==..+..+..++.....+|. +.+--|+--|+.|+..+...|...
T Consensus 467 VfP~f-~s~--------~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 467 VFPEF-QSP--------YGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred hhHhh-cCc--------hhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 33322 211 11234447899999984322345566677777777665 444458999999999999998854
Q ss_pred ---ccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhcc
Q 036770 603 ---FVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQS 679 (1061)
Q Consensus 603 ---l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~ 679 (1061)
+. |++..+++.+-.+....+.+....++|.+. ..-+. +-..+-..|++-+.+.+-++++.. +
T Consensus 538 ~e~~~--------~hvp~~mq~lL~L~ne~End~Lt~vme~iV---~~fse--ElsPfA~eL~q~La~~F~k~l~~~--~ 602 (1010)
T KOG1991|consen 538 DEKVS--------AHVPPIMQELLKLSNEVENDDLTNVMEKIV---CKFSE--ELSPFAVELCQNLAETFLKVLQTS--E 602 (1010)
T ss_pred hhhHh--------hhhhHHHHHHHHHHHhcchhHHHHHHHHHH---HHHHH--hhchhHHHHHHHHHHHHHHHHhcc--C
Confidence 33 366777777666666666666666666553 22222 123455666776666766666531 1
Q ss_pred ccccCCHHHHHHHHHHHhHHHHHHhhhC
Q 036770 680 VDFLKDQDVIRTVLNILQTNTSVASALG 707 (1061)
Q Consensus 680 ~~~~~d~~~~~~i~~il~~~~~i~~~~~ 707 (1061)
...-.+.+..-.+..+|++..++-.++.
T Consensus 603 ~~~~~~ddk~iaA~GiL~Ti~Til~s~e 630 (1010)
T KOG1991|consen 603 DEDESDDDKAIAASGILRTISTILLSLE 630 (1010)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 1111223333346778888777766554
|
|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=192.63 Aligned_cols=145 Identities=34% Similarity=0.640 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH
Q 036770 114 ERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEF 193 (1061)
Q Consensus 114 ~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~ 193 (1061)
+++|++|+|.+++.|++++||+.||+|++++++.+++++..+.++|++|+.++||+.++.+..+...||+++++.|++..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999899999999999999999886557788999999999999999
Q ss_pred HHHHHHHHHHHhhcCc---HHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCccchHHHHHHH
Q 036770 194 QLIHELCLYVLSASQR---TDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCL 258 (1061)
Q Consensus 194 ~~I~~~~~~~L~~~~~---~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~~~~~~a~~cL 258 (1061)
+.|++++.++++...+ +++...+|+|+++|++|+|++.+.++++++.++++|++|++++.|++||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999998654 8899999999999999999999999999999999999999999999997
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-14 Score=162.75 Aligned_cols=720 Identities=14% Similarity=0.205 Sum_probs=353.0
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCC-ChHHHHHHHHHHHHHHhcccC-------CC
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSK-NLNTKFFALQVLEGVIKYRWN-------AL 85 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~-~~~~rffaa~~L~~~I~~~w~-------~l 85 (1061)
|++.+-+.+..-.+| ||+.|+.|++.|++....+..-.....++.+++ +.++|.-|+..++|.|+++|. .+
T Consensus 3 ~le~l~~~l~qTl~p-dps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 3 NLETLANYLLQTLSP-DPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred cHHHHHHHHHhcCCC-CCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 445555555554444 677899999999999998766556677777666 889999999999999999995 57
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHH
Q 036770 86 PVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLL 165 (1061)
Q Consensus 86 ~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l 165 (1061)
.+++++.||.-++..+.+. +.-|..+++.++..|+++++|+.||+.++|+++..++++-...++.. ..
T Consensus 82 ~~~~~e~ikslIv~lMl~s---------~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL---~t 149 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSS---------PFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVL---VT 149 (960)
T ss_pred chhHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHH---HH
Confidence 7889999999999988652 13466789999999999999999999999999999977533332221 23
Q ss_pred HHHHhc-c----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHH----HHHhc--ccccCcchhc
Q 036770 166 SEEVFD-F----SRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTDLIRATLS----TLHAF--LSWIPLGYIF 233 (1061)
Q Consensus 166 ~EEv~~-~----~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~l~~~~L~----~l~~~--l~wi~~~~i~ 233 (1061)
.+-+|+ + .++.+= .-.+...+.+..-+..+|.-..+..+... +....+..+. |.+-| +.+-++..++
T Consensus 150 ahsiFkr~R~efrSdaL~-~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFF 228 (960)
T KOG1992|consen 150 AHSIFKRYRPEFRSDALW-LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFF 228 (960)
T ss_pred HHHHHHhcCcccccHHHH-HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence 333443 2 111111 11223334444445555555555444322 2221111111 11111 2233444455
Q ss_pred c---hhhHHHHHhhCC--Cccch---------HHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhh
Q 036770 234 E---SPLLETLLKFFP--MPSYR---------NLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299 (1061)
Q Consensus 234 ~---~~ll~~l~~~L~--~~~~~---------~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~ 299 (1061)
+ ..+++.++++|. +|.+. +.--.-+||++.+... +|++.+..+...++..++
T Consensus 229 Ednm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~-kYeEef~~fl~~fv~~~W------------- 294 (960)
T KOG1992|consen 229 EDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYAT-KYEEEFQPFLPDFVTATW------------- 294 (960)
T ss_pred HhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHH-hhHHHHHhhHHHHHHHHH-------------
Confidence 4 355555555543 22111 0111112222222110 122211111111111111
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHHHHHHHHHhccC
Q 036770 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDE-TEVFKVCLDYWNSFVLELFDAHNNL 378 (1061)
Q Consensus 300 ~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d-~ei~~~~l~fW~~l~~~l~~~~~~~ 378 (1061)
.+|...+..+- +-....++.|....++.-+...
T Consensus 295 -------------------------------------------~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~--- 328 (960)
T KOG1992|consen 295 -------------------------------------------NLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAE--- 328 (960)
T ss_pred -------------------------------------------HHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHh---
Confidence 11222222221 1122333444444432210000
Q ss_pred CCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHH-HHHHhhC-CCccccccccCCchhHHhhhcchhhHH
Q 036770 379 ENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRM-LMICRMA-KPEEVLIVEDENGNIVRETMKDNDVLV 456 (1061)
Q Consensus 379 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~-~li~km~-~p~e~~~~~~d~~e~~~e~~~d~~~~~ 456 (1061)
++ . -..++.++.. +++..+. +++|....||+--|-.|..++.+|.=.
T Consensus 329 --------~F-----------~------------~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdT 377 (960)
T KOG1992|consen 329 --------LF-----------E------------GENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDT 377 (960)
T ss_pred --------hh-----------c------------chHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcch
Confidence 00 0 0111111111 1111111 122222233333344444333222111
Q ss_pred HHHHHHHHHHHHhcCCHHhHHHH----HHHHHHhhccCCccccchhhHHHHHHHhhhCC--------CChh---HHhHHH
Q 036770 457 QYKIMRETLIYLSHLDHEDTEKQ----MLKKLSKQLSGEDWTWNNLNTLCWAIGSISGS--------MMEE---QENRFL 521 (1061)
Q Consensus 457 ly~~~~~~L~~l~~l~~~~~~~~----i~~~L~~~~~~~~~~w~~le~~~~algsis~~--------~~~~---~e~~~l 521 (1061)
.++...+.+..|+......+..+ +...|++...+++.+|..-+.+.|.+.+++-. .... .-.+|+
T Consensus 378 RRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff 457 (960)
T KOG1992|consen 378 RRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFF 457 (960)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHH
Confidence 22223333333332211111112 22233333346778999999988888777621 1100 012343
Q ss_pred -HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh--HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 522 -VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH--WKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 522 -~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~--~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
.++.+.|.+ +. +.+.+.+-+..+- |.--++++ +++|-..+..+..|+..+...|-..|+.++-++-.-
T Consensus 458 ~~~ilp~L~s-~~---vn~~pilka~aIK-----y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~v 528 (960)
T KOG1992|consen 458 ANQILPDLLS-PN---VNEFPILKADAIK-----YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTV 528 (960)
T ss_pred HHHhhHHhcc-Cc---cccccchhhcccc-----eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcccc
Confidence 445555543 11 1123333333343 33334443 578888999999988766678889999999998877
Q ss_pred hhh---cccccccCCCchHHHHHHHhHHHhhhcCCc-chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHH
Q 036770 599 CKR---KFVIVQVGENEPFVSELLSGLATTVADLEP-HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIA 674 (1061)
Q Consensus 599 c~~---~l~~~~~~e~~p~l~~il~~l~~~~~~l~~-~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~ 674 (1061)
|.. ++.. +....||+..++.++-... .++. ....++++||-.+++..+..-. .+.. .+...+.+++.
T Consensus 529 re~~~~~if~--~~~iap~~~~ll~nLf~a~-s~p~~~EneylmKaImRii~i~~~~i~--p~~~----~~l~~Lteiv~ 599 (960)
T KOG1992|consen 529 RENSNAKIFG--AEDIAPFVEILLTNLFKAL-SLPGKAENEYLMKAIMRIISILQSAII--PHAP----ELLRQLTEIVE 599 (960)
T ss_pred ccCccccccc--hhhcchHHHHHHHHHHHhc-cCCcccccHHHHHHHHHHHHhCHHhhh--hhhh----HHHHHHHHHHH
Confidence 765 2322 3467789888887775332 2332 3467899999999988764321 2333 33334444555
Q ss_pred HHhccccccCCHHHHHHHHHHHhHHHH----HHhhhC-------hhhHHHHHHHH-HHHHHHHHHHHHHHHHhHhcCCC-
Q 036770 675 QARQSVDFLKDQDVIRTVLNILQTNTS----VASALG-------TFFLSQISVIF-LDMLNVYKMYSELISSSISSGGP- 741 (1061)
Q Consensus 675 ~~~~~~~~~~d~~~~~~i~~il~~~~~----i~~~~~-------~~f~~~~~~i~-~~ll~~y~~~~~~i~~~~~~~g~- 741 (1061)
....|| .+|.- -|++++..+. .|+.-+ ....|.+..|+ .|+.+.+.-..+++..-+...+.
T Consensus 600 ~v~KNP---s~P~f---nHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ 673 (960)
T KOG1992|consen 600 EVSKNP---SNPQF---NHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGT 673 (960)
T ss_pred HHhcCC---CCchh---HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 545555 34432 2344443322 233221 12223333332 23333333333333333332222
Q ss_pred Cc-cchhhhHHHH--------HHHHHHHHHHHHHHhhCCCh-------hhhh---hc-CCCCcchHHHHHHHHHHHHhhh
Q 036770 742 FA-SKTSYVKLLR--------SVKRETLKLIETFLDKAEDQ-------PQIG---KQ-NVPDARESEVLSLFATIINKYK 801 (1061)
Q Consensus 742 ~~-~~~~~~~~~~--------~~~~~il~ll~~~i~~~~~~-------~~l~---~~-~~~~~r~~~~L~l~~~li~~~~ 801 (1061)
.. .-.+....+. .--....++++.++.+.... ..+. +. ..+.+-+..-.+++..++..+.
T Consensus 674 ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~ 753 (960)
T KOG1992|consen 674 IPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIP 753 (960)
T ss_pred CchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCC
Confidence 10 0011111110 00112345566666544211 0000 00 1111223344566666666554
Q ss_pred cc-CCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhh-----cCChHHHHHHHHHHH
Q 036770 802 GA-MIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALI-----RLSSQQLKLVMDSII 868 (1061)
Q Consensus 802 ~~-~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~-----~~~~~~~~~~~~~i~ 868 (1061)
.. ..+++..|+..+|++.- + ..-|...+.|.-|+..++.+.-...+ ...+..|..+++.++
T Consensus 754 ~~~~~py~k~i~~llf~Rlq----n--skT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~i 820 (960)
T KOG1992|consen 754 PNELAPYMKQIFGLLFQRLQ----N--SKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENFI 820 (960)
T ss_pred HhhhhHHHHHHHHHHHHHHh----c--cCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHhc
Confidence 42 35677777777776643 1 35567778888888777665433322 234566777777654
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-12 Score=148.88 Aligned_cols=141 Identities=16% Similarity=0.310 Sum_probs=111.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHcc-CCChHHHHHHHHHHHHHHhcccCC----------CCHH
Q 036770 20 ATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWNA----------LPVE 88 (1061)
Q Consensus 20 ~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~-s~~~~~rffaa~~L~~~I~~~w~~----------l~~e 88 (1061)
..+....++ |+..|.+|+.-|.++-.+++.-.....+..+ ..+...|.+|+..|+..|.+.|.. -+.+
T Consensus 8 ~~L~~~ls~-d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~ 86 (1005)
T KOG2274|consen 8 ELLSGSLSA-DQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEE 86 (1005)
T ss_pred HHHHhhcCC-ChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHH
Confidence 334444444 7779999999999999988744444444433 356789999999999999999963 3456
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC-ChhHHHHHHHHHHHHHH
Q 036770 89 QRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT-SETICENCMAILKLLSE 167 (1061)
Q Consensus 89 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~-~~~~~~~~L~iL~~l~E 167 (1061)
.|..||+.|++.+.. ++..+++-.+.+++.|+.-+||+.||..++-++.++++ +.+.....|++|..+..
T Consensus 87 ~K~~IRe~Ll~~l~~---------sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 87 VKALIREQLLNLLDD---------SNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred HHHHHHHHHHhhhhc---------cccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 788999999988762 13567888999999999999999999999999999884 45667778999998888
Q ss_pred HHh
Q 036770 168 EVF 170 (1061)
Q Consensus 168 Ev~ 170 (1061)
|+.
T Consensus 158 ev~ 160 (1005)
T KOG2274|consen 158 EVD 160 (1005)
T ss_pred HHH
Confidence 874
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-10 Score=131.84 Aligned_cols=170 Identities=14% Similarity=0.273 Sum_probs=125.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHcc-CCChHHHHHHHHHHHHHHhcccC-----CCCHHHHHH
Q 036770 19 DATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWN-----ALPVEQRDG 92 (1061)
Q Consensus 19 ~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~-s~~~~~rffaa~~L~~~I~~~w~-----~l~~e~~~~ 92 (1061)
.+.++..-+| ++..++.|++.|+++++.|..+.....+..+ +.+..+|..|..-++|-|.+.|. +||+|+|..
T Consensus 3 vq~Lq~Ats~-d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~ 81 (978)
T KOG1993|consen 3 VQVLQQATSQ-DHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDF 81 (978)
T ss_pred HHHHHHhcCC-CcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHH
Confidence 3455555455 6668999999999999999998887777654 44679999999999999999995 799999999
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC----hhHHHHHHHHHHHHHHH
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS----ETICENCMAILKLLSEE 168 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~----~~~~~~~L~iL~~l~EE 168 (1061)
||..++.++... +.-+-.+.|.+++.||+-+||..||+.++++.+.+++. +.. ...++|-.+..=
T Consensus 82 iR~~Ll~~~~E~---------~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~--~~~RiLi~l~~i 150 (978)
T KOG1993|consen 82 IRCNLLLHSDEE---------NNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSL--VQHRILITLHHI 150 (978)
T ss_pred HHHHHHHhcccc---------hhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHH--HHHHHHHHHHHH
Confidence 999999987531 23466788999999999999999999999999988753 321 122333333221
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLS 205 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~ 205 (1061)
+ ..+.++|-..-+.++.+-.+.|++++.-++-
T Consensus 151 l-----K~Lat~RL~a~rk~F~el~~~I~~~l~~~l~ 182 (978)
T KOG1993|consen 151 L-----KALATKRLLADRKAFYELAPEILTILAPILW 182 (978)
T ss_pred H-----HHHHHhHHhhhhHHHHHHhHHHHHHHHHHHh
Confidence 1 1233344445556677778888886655543
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-08 Score=121.69 Aligned_cols=361 Identities=14% Similarity=0.130 Sum_probs=213.0
Q ss_pred HHHHHHHHhcCCHHhHHHHHHHHHHhhc----cC-CccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhh
Q 036770 461 MRETLIYLSHLDHEDTEKQMLKKLSKQL----SG-EDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMT 535 (1061)
Q Consensus 461 ~~~~L~~l~~l~~~~~~~~i~~~L~~~~----~~-~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~ 535 (1061)
-+.+|..|+.+ .+++.+.|...|.+.+ ++ ...+.+..-++|.|+|.++..+.++.++.+-.++.+.|+...+..
T Consensus 365 R~AaL~Als~i-~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 365 RHAALLALSVI-AEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred HHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc
Confidence 35566666555 5566666666555443 22 345677778999999999999999988888877887777776654
Q ss_pred cCCcchHHHHHhHHHHhccchHHHHH--hHHHHHHHHHHHHHhh-hcCChhHHHHHHHHHHHHHHHhhhcccccccCCCc
Q 036770 536 KGKDNKAVIASNIMYVVGQYPRFLRA--HWKFLKTVVNKLFEFM-HETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENE 612 (1061)
Q Consensus 536 ~~~~~k~~v~s~i~~~ig~y~~~l~~--~~~~L~~vl~~L~~~~-~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~ 612 (1061)
.+....+.. ..++++ +.++... -..||+.++++++..+ ..+.+.|++.|..++.+++..+..+|.+
T Consensus 444 ~~~rV~ahA---a~al~n-f~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p------- 512 (1075)
T KOG2171|consen 444 QNVRVQAHA---AAALVN-FSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP------- 512 (1075)
T ss_pred CchHHHHHH---HHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh-------
Confidence 332222222 222332 2222211 1358899999766644 5667889999999999999999999986
Q ss_pred hHHHHHHHhHHHhhhcCCcc----hHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHH
Q 036770 613 PFVSELLSGLATTVADLEPH----QIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDV 688 (1061)
Q Consensus 613 p~l~~il~~l~~~~~~l~~~----~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~ 688 (1061)
|++.++..+..+...-+.+ -|.+.+|+++.+.-+++.+... .+.+.+++.+...-. +.....|+
T Consensus 513 -Y~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~-~~a~eliqll~~~~~--------~~~~~dd~-- 580 (1075)
T KOG2171|consen 513 -YFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL-PLAEELIQLLLELQG--------SDQDDDDP-- 580 (1075)
T ss_pred -HHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh-HhHHHHHHHHHhhcc--------cchhhccc--
Confidence 8899988888776654422 3667799999999999865432 355555554332110 10001222
Q ss_pred HHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHH-------HHhHhcC--------CC--Cccchhhh--
Q 036770 689 IRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELI-------SSSISSG--------GP--FASKTSYV-- 749 (1061)
Q Consensus 689 ~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i-------~~~~~~~--------g~--~~~~~~~~-- 749 (1061)
...+.+..++++|+.+|+.|.|+++.++|.++..-+...+.. ...-... |. ...+++..
T Consensus 581 --~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~e 658 (1075)
T KOG2171|consen 581 --LRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDE 658 (1075)
T ss_pred --cHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHH
Confidence 346777889999999999999999999998875433221110 0000000 10 01111111
Q ss_pred HH--HH-------HHHHHHHHHHHHHHh-hCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhc---cCCCChHHHHHHHH
Q 036770 750 KL--LR-------SVKRETLKLIETFLD-KAEDQPQIGKQNVPDARESEVLSLFATIINKYKG---AMIDDVPRIFEAIF 816 (1061)
Q Consensus 750 ~~--~~-------~~~~~il~ll~~~i~-~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~---~~~~~l~~i~~~l~ 816 (1061)
|. +. .+|....+.++.+.+ ..+.+... -+...|. ..+.++.+++..... ....++.++...++
T Consensus 659 K~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~---fhdgVR~-aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~ 734 (1075)
T KOG2171|consen 659 KETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFY---FHDGVRK-AAAESMPQLLTCALKACQGGPEYLKQLWEAIR 734 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---hhhHHHH-HHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 11 11 112222222222222 00000000 1111222 234444444444433 33447778888888
Q ss_pred HHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhh
Q 036770 817 QCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALI 853 (1061)
Q Consensus 817 ~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~ 853 (1061)
.+.+.-+..+ ..+++..++++-+..+++.|-...+
T Consensus 735 ~~l~~~l~~E--~e~~vl~~vl~~f~~~i~~~G~~~L 769 (1075)
T KOG2171|consen 735 PALIKALEEE--PETEVLSEILESFAECIEVMGDNCL 769 (1075)
T ss_pred HHHHHHhhcC--CcHHHHHHHHHHHHHHHHhcCcccC
Confidence 8877777664 4588899999888888887654443
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-08 Score=111.55 Aligned_cols=186 Identities=20% Similarity=0.346 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHHHHHHHH
Q 036770 30 SKEERTAADQILRDLQNNPDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYRWNA-----LPVEQRDGMKNYISEVIVQ 103 (1061)
Q Consensus 30 ~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~w~~-----l~~e~~~~lr~~ll~~l~~ 103 (1061)
|+..|..|+..|.++++.|.....|.++++.. .+.++|.-|+..++|+|.+.|.+ .+++.+...|..+++-+..
T Consensus 16 da~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lienil~ 95 (970)
T COG5656 16 DAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENILD 95 (970)
T ss_pred CcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHHHH
Confidence 77789999999999999999999999999765 47899999999999999999986 3455667777777766655
Q ss_pred hhcCchhhhhhHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHccCCh-hHHHHHHHHHHHHHHHHhccCcccchHHH
Q 036770 104 LSSNEASFREERLYVNKLNIILVQILKHEWP-ARWRSFIPDLVAAAKTSE-TICENCMAILKLLSEEVFDFSRGEMTQQK 181 (1061)
Q Consensus 104 ~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p-~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~EEv~~~~~~~l~~~r 181 (1061)
.+.. ++.+.|+.+..+++.|+-.+|| +.|+ +++-..+.+++++ ...-.+|.++..+ ++.-+=++. .+
T Consensus 96 v~l~-----sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el----fkayRwk~n-de 164 (970)
T COG5656 96 VFLY-----SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL----FKAYRWKYN-DE 164 (970)
T ss_pred HHhc-----CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH----HHHHhhhcc-ch
Confidence 4322 2355677888999999999999 6899 8899888888775 3455566655544 432121222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CcHHHHHHHHHHHHhcccc
Q 036770 182 IKELKQSLNSEFQLIHELCLYVLSAS--QRTDLIRATLSTLHAFLSW 226 (1061)
Q Consensus 182 ~~~l~~~l~~~~~~I~~~~~~~L~~~--~~~~l~~~~L~~l~~~l~w 226 (1061)
|..+..-+..-+|.+.++-.++.... ...++....|+.+++++-.
T Consensus 165 q~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~ 211 (970)
T COG5656 165 QVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY 211 (970)
T ss_pred HhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh
Confidence 44444444455666655555554421 3567888899988877653
|
|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-08 Score=112.91 Aligned_cols=204 Identities=14% Similarity=0.292 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHcc-CCChHHHHHHHHHHHHHHhcccC-----CCCHHHHHHHHHHHHHHHHH
Q 036770 30 SKEERTAADQILRDLQNNPDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWN-----ALPVEQRDGMKNYISEVIVQ 103 (1061)
Q Consensus 30 ~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~-s~~~~~rffaa~~L~~~I~~~w~-----~l~~e~~~~lr~~ll~~l~~ 103 (1061)
+|..++.|++-|+++.+.++.-.....+..+ +.+..+|.-|+.-++|.|.+.|. .+.++++..||..++..+.+
T Consensus 17 ~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~ 96 (947)
T COG5657 17 DPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIIS 96 (947)
T ss_pred CCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHc
Confidence 4557999999999999999855555555443 45779999999999999999996 46777778999999999987
Q ss_pred hhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHHHHHHHHHHhccCcccchHHHH
Q 036770 104 LSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAILKLLSEEVFDFSRGEMTQQKI 182 (1061)
Q Consensus 104 ~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~ 182 (1061)
..+ +.++ +.+.+++.|+.-+||+.||+.++|+++.++.++ ....+.++.+..+..+..+. -|-
T Consensus 97 s~n-------~l~i--q~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l-------~Rs 160 (947)
T COG5657 97 SSN-------QLQI--QNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRL-------FRS 160 (947)
T ss_pred ccc-------hHHH--HHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhh-------hcc
Confidence 321 2333 788999999999999999999999999998743 23334444444443333221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC---------c---HHHHHHHHHHHHhccc--ccCcchhcc---hhhHHHHHhhC
Q 036770 183 KELKQSLNSEFQLIHELCLYVLSASQ---------R---TDLIRATLSTLHAFLS--WIPLGYIFE---SPLLETLLKFF 245 (1061)
Q Consensus 183 ~~l~~~l~~~~~~I~~~~~~~L~~~~---------~---~~l~~~~L~~l~~~l~--wi~~~~i~~---~~ll~~l~~~L 245 (1061)
. ..+-.-.+.+..++...+-... + -.+-..+|+.++.|.. +-++..+++ +.++..+.+++
T Consensus 161 d---~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~kll 237 (947)
T COG5657 161 D---ALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLL 237 (947)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 1 2233345555555554443321 1 1233456666666654 333334444 24444455555
Q ss_pred C--CccchH
Q 036770 246 P--MPSYRN 252 (1061)
Q Consensus 246 ~--~~~~~~ 252 (1061)
. .+..+.
T Consensus 238 s~~~~~lq~ 246 (947)
T COG5657 238 SYSNPVLQK 246 (947)
T ss_pred hhcchhhhh
Confidence 4 444444
|
|
| >PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=88.51 Aligned_cols=66 Identities=29% Similarity=0.633 Sum_probs=61.7
Q ss_pred HHHHHHHHhcC-cccHHHHHHHHc-cCCChHHHHHHHHHHHHHHhcccC--------CCCHHHHHHHHHHHHHHHH
Q 036770 37 ADQILRDLQNN-PDMWLQVVHILQ-NSKNLNTKFFALQVLEGVIKYRWN--------ALPVEQRDGMKNYISEVIV 102 (1061)
Q Consensus 37 A~~~L~~fq~s-~~aw~~~~~iL~-~s~~~~~rffaa~~L~~~I~~~w~--------~l~~e~~~~lr~~ll~~l~ 102 (1061)
|+++|++++++ |++|..+..++. .+.+..+|++|+.+|++.|+++|. .+|+++|..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 899999999994 445899999999999999999999 9999999999999999875
|
Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A .... |
| >KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.4e-05 Score=84.85 Aligned_cols=310 Identities=12% Similarity=0.109 Sum_probs=174.6
Q ss_pred HHHHHHHHhh--hcCChhHHHHHHHHHHHHHHHh-hhcccccccCCCchHHHHHHHhHHHh---hhcCCcchHHHHHHHH
Q 036770 568 TVVNKLFEFM--HETHPGVQDMACDTFLKIVQKC-KRKFVIVQVGENEPFVSELLSGLATT---VADLEPHQIHTFYESV 641 (1061)
Q Consensus 568 ~vl~~L~~~~--~~~~~~v~~~A~~~f~~i~~~c-~~~l~~~~~~e~~p~l~~il~~l~~~---~~~l~~~~~~~l~eai 641 (1061)
-++.|++.-+ .++...+..-|.+++..++.+. +..++. ++ +. +..+...+.+. ...+++..+..++.|+
T Consensus 295 ~ii~kVla~lvn~~sE~~L~~Da~q~l~~lVe~~~~~~vvv-~~---e~-~~~laeq~~s~~~~l~i~s~p~~~~lmkaL 369 (748)
T KOG4541|consen 295 LIIGKVLADLVNGESETALVPDALQSLFVLVEEANNHPVVV-LS---ES-IIKLAEQCLSAEMRLSIFSPPLMEALMKAL 369 (748)
T ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHhccCCeee-cc---HH-HHHHHHHHhccCCcccccCchHHHHHHHHH
Confidence 3444444433 3445566677777777777763 333443 11 11 12222222221 1234566789999999
Q ss_pred hhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH-HH--
Q 036770 642 GHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV-IF-- 718 (1061)
Q Consensus 642 g~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~-i~-- 718 (1061)
.....+..+.+.+.++....++|+.+++-..+++.+ ..+.+..|..-+.+..+++++-+.+-.+.+-. ++
T Consensus 370 vl~gfa~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~~-------q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf~fL~~~ 442 (748)
T KOG4541|consen 370 VLWGFAYLDLEEECNLGSNKLQPLPSRFFTYFNQHN-------QGKFVLDIIVRLSLTSGTAYAGQKDLQRSLFQFLVLS 442 (748)
T ss_pred HHHHHHHhhHHHHHHHHHhhccccHHHHHHHhcccc-------hhhHHHHHHHHHHHhccccccccchhHHHHHHHHHHH
Confidence 998888877778889999999999999877665432 33455667777888888877655443333211 11
Q ss_pred ----HHHHHHHHHHHHHHHHhHhcCCCCccchh-----hhHHHHHHHHHHHHHHHHHHhhCCChh--hhh--hcCCCCcc
Q 036770 719 ----LDMLNVYKMYSELISSSISSGGPFASKTS-----YVKLLRSVKRETLKLIETFLDKAEDQP--QIG--KQNVPDAR 785 (1061)
Q Consensus 719 ----~~ll~~y~~~~~~i~~~~~~~g~~~~~~~-----~~~~~~~~~~~il~ll~~~i~~~~~~~--~l~--~~~~~~~r 785 (1061)
-.++..|+.....+...++..-+.+.|.. ..+. ..+..+++.+++.|-...-..+ ..+ +.... .
T Consensus 443 ~~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~-~~ly~sclql~~~y~~~~~~r~rt~~a~~Ee~~s--d 519 (748)
T KOG4541|consen 443 AYGCRGLMASNQYVKDLVAHITSSLVDVSNKSDLYNLAEQPD-IILYVSCLQLERLYGAASATRPRTQRAIYEEGLS--D 519 (748)
T ss_pred HhhhhhHHHHhhccHHHHHHHHHHHHHhhhhhhhhccccChh-HHHHHHHHHHHHHhhhhcccCcchHHHHHHhhhh--H
Confidence 22334444333333222110000000000 0011 1244555666666654331100 000 00000 1
Q ss_pred hHHHHHHHHHHHHhhhccC--CC----ChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHH
Q 036770 786 ESEVLSLFATIINKYKGAM--ID----DVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQ 859 (1061)
Q Consensus 786 ~~~~L~l~~~li~~~~~~~--~~----~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~ 859 (1061)
..-|+.+++.+.+|--... .. ...++.-.=..-++++++++...||+++-.||+++.-++...|+.+-+.+...
T Consensus 520 l~lvl~lL~n~lskdF~~~s~e~~~~~G~a~VV~~gl~~ilplm~~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l 599 (748)
T KOG4541|consen 520 LNLVLRLLENYLSKDFSSDSIETQSTNGIAQVVYFGLHIILPLMTLELLKYPKLCFDDVDLITYMCERAPEALASYHYKL 599 (748)
T ss_pred HHHHHHHHHHHhhhhhhccccccccccCcceEEEeeHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 1236677777666531111 11 11111111124567788889999999999999999999999999998888778
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 860 LKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 860 ~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
++.+.+|+..|++- ++...++....+.+...+.
T Consensus 600 ~~sl~qc~~LGMTg---e~~s~~l~~~~e~v~hfgs 632 (748)
T KOG4541|consen 600 KNSLNQCSGLGMTG---ESHSAGLHTDPEGVFHFGS 632 (748)
T ss_pred HHHHHHhhccCCcc---ccchHhhccChHhhhcccc
Confidence 88888888777762 5666677777777766653
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00087 Score=78.07 Aligned_cols=285 Identities=14% Similarity=0.219 Sum_probs=168.6
Q ss_pred ccchhhHHHHHHHhhhCCCChhHH-hHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchH----HHHHh------
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQE-NRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPR----FLRAH------ 562 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e-~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~----~l~~~------ 562 (1061)
-|-. .++-|++|+|++...+... ...+..+++.++.-.. ..++++++.+|..-.+.+ =...+
T Consensus 420 l~Vk-dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~------DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 420 LWVK-DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN------DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred hhhc-chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh------hCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 4555 8999999999998764322 3455666665554222 335678888875443332 11112
Q ss_pred HHHHHHHHHHHHHhhhc---CChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh--cCCcch----
Q 036770 563 WKFLKTVVNKLFEFMHE---THPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA--DLEPHQ---- 633 (1061)
Q Consensus 563 ~~~L~~vl~~L~~~~~~---~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~--~l~~~~---- 633 (1061)
..|.+.+++.|+...+. ....+|..|-.++..+++-|.+.-.+. ...+...++..+.+..+ .++-.+
T Consensus 493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~----v~~~~l~il~kl~q~i~~~~l~~~dr~q~ 568 (859)
T KOG1241|consen 493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM----VQKLTLVILEKLDQTISSQILSLADRAQL 568 (859)
T ss_pred chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH----HHHHHHHHHHHHHHHHHHHhccHhhHHHH
Confidence 14778899999985531 234589999999999997665433220 00134444454444332 333222
Q ss_pred ---HHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhh
Q 036770 634 ---IHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFF 710 (1061)
Q Consensus 634 ---~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f 710 (1061)
+..+.-.++.++..++.+ ..+..+.+|..+..-+++ .+++. -.+ ..+...+.++..+|+.|
T Consensus 569 ~eLQs~Lc~~Lq~i~rk~~~~--~~~~~d~iM~lflri~~s----~~s~~---v~e-------~a~laV~tl~~~Lg~~F 632 (859)
T KOG1241|consen 569 NELQSLLCNTLQSIIRKVGSD--IREVSDQIMGLFLRIFES----KRSAV---VHE-------EAFLAVSTLAESLGKGF 632 (859)
T ss_pred HHHHHHHHHHHHHHHHHcccc--chhHHHHHHHHHHHHHcC----Ccccc---chH-------HHHHHHHHHHHHHhHhH
Confidence 344566778888887762 346777788777665543 11111 111 22344556677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcc--hHH
Q 036770 711 LSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDAR--ESE 788 (1061)
Q Consensus 711 ~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r--~~~ 788 (1061)
..+++.+.|-+..-.+++.+.-. +....| -.-+..|.++..|+++...+++.. .+.+. +....| .|.
T Consensus 633 ~kym~~f~pyL~~gL~n~~e~qV-c~~aVg------lVgdl~raL~~~i~py~d~~mt~L--vq~Ls--s~~~hR~vKP~ 701 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMGLSNFQEYQV-CAAAVG------LVGDLARALEDDILPYCDELMTVL--VQCLS--SPNLHRNVKPA 701 (859)
T ss_pred HHHHHHHHHHHHHHhhcchHHHH-HHHHHH------HHHHHHHHHHhhhhhHHHHHHHHH--HHHcc--Cccccccccch
Confidence 99999988888766655543211 111111 112445666666776655555432 01111 222234 578
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHH
Q 036770 789 VLSLFATIINKYKGAMIDDVPRIFEAIF 816 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~~~~~l~~i~~~l~ 816 (1061)
+|++++.|...+|.++.+++..++..+-
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq 729 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQ 729 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999887775544
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.042 Score=63.55 Aligned_cols=284 Identities=16% Similarity=0.232 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchH----HHHHH
Q 036770 564 KFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQI----HTFYE 639 (1061)
Q Consensus 564 ~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~----~~l~e 639 (1061)
+.|+.++..|=+-+......|++++.-++..|++.|-+-|++ ++.+++..+-+...+-.+--| =++..
T Consensus 389 elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p--------~LpeLip~l~~~L~DKkplVRsITCWTLsR 460 (885)
T KOG2023|consen 389 ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVP--------HLPELIPFLLSLLDDKKPLVRSITCWTLSR 460 (885)
T ss_pred HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhccc--------chHHHHHHHHHHhccCccceeeeeeeeHhh
Confidence 345555555555444556789999999999999999998886 566666655444322111111 11221
Q ss_pred HHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHH
Q 036770 640 SVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719 (1061)
Q Consensus 640 aig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~ 719 (1061)
= |.-+...+ +.+++..+|.++..++ +- .+..+.+..+..+ ..+-..-|....|+++.|..
T Consensus 461 y-s~wv~~~~----~~~~f~pvL~~ll~~l---lD---------~NK~VQEAAcsAf---AtleE~A~~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 461 Y-SKWVVQDS----RDEYFKPVLEGLLRRL---LD---------SNKKVQEAACSAF---ATLEEEAGEELVPYLEYILD 520 (885)
T ss_pred h-hhhHhcCC----hHhhhHHHHHHHHHHH---hc---------ccHHHHHHHHHHH---HHHHHhccchhHHHHHHHHH
Confidence 1 22222333 3457777766655432 10 1222222223322 23333445567888888888
Q ss_pred HHHHHHHHHHHHHHHh-HhcCCCCccch--hh--hHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHH
Q 036770 720 DMLNVYKMYSELISSS-ISSGGPFASKT--SY--VKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFA 794 (1061)
Q Consensus 720 ~ll~~y~~~~~~i~~~-~~~~g~~~~~~--~~--~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~ 794 (1061)
.+...|+.|.+.-... ..+.|..|... .. -.++..+ +=+++++|-. . +..+-..--.|.|++
T Consensus 521 ~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL---mPPLi~KW~~--------l--sd~DKdLfPLLEClS 587 (885)
T KOG2023|consen 521 QLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL---MPPLIEKWEL--------L--SDSDKDLFPLLECLS 587 (885)
T ss_pred HHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh---ccHHHHHHHh--------c--CcccchHHHHHHHHH
Confidence 8777776664421111 12222211100 00 0111111 1123333321 1 222212245799999
Q ss_pred HHHHhhhccCCCChHHHHHHHH---HHhHHhhhh----ccCCChH--hHHHHHHHHHHHHhhch---hHhhcCChHHHHH
Q 036770 795 TIINKYKGAMIDDVPRIFEAIF---QCTLEMITK----NFEDYPE--HRLKFFSLLRAIATHCF---PALIRLSSQQLKL 862 (1061)
Q Consensus 795 ~li~~~~~~~~~~l~~i~~~l~---~~tl~~i~~----~~~~~Pd--~~~~~f~ll~~i~~~~~---~~l~~~~~~~~~~ 862 (1061)
.+...+|..+-|+.++++++.| +.|+..+.+ .--+.|| ....-..|++-+++... +.++. +++....
T Consensus 588 sia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva-~snl~~l 666 (885)
T KOG2023|consen 588 SIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVA-QSNLLDL 666 (885)
T ss_pred HHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhh-hccHHHH
Confidence 9999999999999998888666 333444321 1223444 44445667777766433 33332 2233333
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHhc
Q 036770 863 VMDSIIWAFRHTERNIAETGLNLLLEMLKNF 893 (1061)
Q Consensus 863 ~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~ 893 (1061)
+ ...+...-+++-.+|+..+.++.+.+
T Consensus 667 l----l~C~~D~~peVRQS~FALLGDltk~c 693 (885)
T KOG2023|consen 667 L----LQCLQDEVPEVRQSAFALLGDLTKAC 693 (885)
T ss_pred H----HHHhccCChHHHHHHHHHHHHHHHHH
Confidence 3 44556889999999999999987665
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.063 Score=64.52 Aligned_cols=293 Identities=14% Similarity=0.127 Sum_probs=153.0
Q ss_pred HHHc--cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhc
Q 036770 56 HILQ--NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEW 133 (1061)
Q Consensus 56 ~iL~--~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~ 133 (1061)
.++. .+++-..||.|.+=|-+-+++.-..|+.+.-.-+-.-++..+... + + -|.|-...+++-++.+--
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~-n-g-------EVQnlAVKClg~lvsKvk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK-N-G-------EVQNLAVKCLGPLVSKVK 79 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc-C-c-------HHHHHHHHHHHHHHhhch
Confidence 4553 456788999999999999999877777665544444556655432 1 1 133445567776665542
Q ss_pred CCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHH
Q 036770 134 PARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTD 211 (1061)
Q Consensus 134 p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~ 211 (1061)
-.+-.+..+.++..+-++ ++.....-.-|+...-++.-++...++. .-++.+...+.+.+.... ...
T Consensus 80 e~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~-----------tV~~~~t~~l~~~i~~qe~~sa 148 (1233)
T KOG1824|consen 80 EDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAA-----------TVCKRITPKLKQAISKQEDVSA 148 (1233)
T ss_pred HHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccccc-----------HHHHHHHHHHHHHhhhcccchh
Confidence 234556666666653333 3333332222333333332211122222 133444444444444322 233
Q ss_pred HHHHHHHHHHhcccc----cCcchhcchhhHHHHHhhCCCc--cchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHH
Q 036770 212 LIRATLSTLHAFLSW----IPLGYIFESPLLETLLKFFPMP--SYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQL 285 (1061)
Q Consensus 212 l~~~~L~~l~~~l~w----i~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l 285 (1061)
+...+|+.++.+++- +|. +...++..+...|..+ .+|..|+-||..+++...+.-|.+ +++.+
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~---fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~--------li~~L 217 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPN---FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVE--------LIEHL 217 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcc---hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHH--------HHHHH
Confidence 566777777776652 221 3345555555445554 478999999999887433221222 33332
Q ss_pred HhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhh---ccChhhHHHHHHH
Q 036770 286 QTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINIS---YVDETEVFKVCLD 362 (1061)
Q Consensus 286 ~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~---~~~d~ei~~~~l~ 362 (1061)
..=++... ...-++.+.+++.+++...-....+. ....+ ..+.+.+ +.+|+|.-+.|++
T Consensus 218 l~~L~~~~------------q~~~~rt~Iq~l~~i~r~ag~r~~~h--~~~iv----p~v~~y~~~~e~~dDELrE~~lQ 279 (1233)
T KOG1824|consen 218 LKGLSNRT------------QMSATRTYIQCLAAICRQAGHRFGSH--LDKIV----PLVADYCNKIEEDDDELREYCLQ 279 (1233)
T ss_pred HhccCCCC------------chHHHHHHHHHHHHHHHHhcchhhcc--cchhh----HHHHHHhcccccCcHHHHHHHHH
Confidence 22111111 11233444555555555432222211 11112 3333333 5567888888988
Q ss_pred HHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCcccc
Q 036770 363 YWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVL 435 (1061)
Q Consensus 363 fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~ 435 (1061)
-...|... .|. -..|+...+...+++++.|++...
T Consensus 280 ale~fl~r-------cp~-------------------------------ei~p~~pei~~l~l~yisYDPNy~ 314 (1233)
T KOG1824|consen 280 ALESFLRR-------CPK-------------------------------EILPHVPEIINLCLSYISYDPNYN 314 (1233)
T ss_pred HHHHHHHh-------Chh-------------------------------hhcccchHHHHHHHHHhccCCCCC
Confidence 87777643 110 013456677788889999987544
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.38 Score=61.22 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=84.7
Q ss_pred CccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhc----cchHHH--HHhHH
Q 036770 491 EDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVG----QYPRFL--RAHWK 564 (1061)
Q Consensus 491 ~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig----~y~~~l--~~~~~ 564 (1061)
..-.|+..|++|-|+.-+-..-+-+...+.++.+-..+++..++-. +.-...+....-+++ |.++-- ..-.+
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIK--EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIK--ESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 3457999999999998887665555556777777777776555321 111111222222333 222221 12346
Q ss_pred HHHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCC
Q 036770 565 FLKTVVNKLFE-FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLE 630 (1061)
Q Consensus 565 ~L~~vl~~L~~-~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~ 630 (1061)
++..++++|++ ++-..-+.|+..+..++.++++...+.+.+ |+..++..+-...+.++
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP--------~~~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP--------HFPKLIPLLLNAYSELE 1185 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc--------hhhHHHHHHHHHccccc
Confidence 89999999999 554556789999999999999998887764 77777766655544443
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.36 Score=56.73 Aligned_cols=302 Identities=14% Similarity=0.208 Sum_probs=163.3
Q ss_pred hhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH-HhHHHHHHHHHHHHHh
Q 036770 498 LNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR-AHWKFLKTVVNKLFEF 576 (1061)
Q Consensus 498 le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~-~~~~~L~~vl~~L~~~ 576 (1061)
.|..--++|-++.++.- +++.+.|-.+|.++. .-+++ +++|- ++.+.+.++. ..-.+|++++.-+=.+
T Consensus 493 Rnttarafavvasalgi-------p~llpfLkavc~Skk--SwqaR-hTgIk-ivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 493 RNTTARAFAVVASALGI-------PALLPFLKAVCGSKK--SWQAR-HTGIK-IVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred HHHHHHHHHHHHHHhCc-------HHHHHHHHHHhcccc--chhhh-chhhH-HHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 34445556666666542 345555555665542 12232 33343 5555555543 2345788877776668
Q ss_pred hhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHH
Q 036770 577 MHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREE 656 (1061)
Q Consensus 577 ~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~ 656 (1061)
+.+.+..|+..++.++..+++.....=.. -+++++.-+..-...--.+.-..|..|+|++|--+..+ ...-
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie--------~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~e-ya~y 632 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIE--------QFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAE-YASY 632 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHH-HHHH
Confidence 87778899999999999999866543222 24666665554333333445667899999999766533 2223
Q ss_pred HHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhC--hhhHHHHHHHHHHHHHHHHH-------
Q 036770 657 YLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALG--TFFLSQISVIFLDMLNVYKM------- 727 (1061)
Q Consensus 657 ~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~--~~f~~~~~~i~~~ll~~y~~------- 727 (1061)
|-..+|-.+...+ +. .|++-.+.+..+++ .+|..-| +.|.. ..+.|.++..|..
T Consensus 633 yTrevmlil~rEf--------~s----PDeemkkivLKVv~---qcc~t~Gv~~~y~r--~dilp~ff~~fw~rrmA~dr 695 (1172)
T KOG0213|consen 633 YTREVMLILIREF--------GS----PDEEMKKIVLKVVK---QCCATDGVEPAYIR--FDILPEFFFSFWGRRMALDR 695 (1172)
T ss_pred hHHHHHHHHHHhh--------CC----ChHHHHHHHHHHHH---HHhcccCCCHHHHh--hhhhHHHHhhhhhhhhhccc
Confidence 4444444333322 22 36666665555443 3444333 23321 2333333322221
Q ss_pred --HHHHHH---HhHhcCCCCccchhhhHHHH-------HHHHHHHHHHHHHHhhCCC------hhh-h-----hhcCCCC
Q 036770 728 --YSELIS---SSISSGGPFASKTSYVKLLR-------SVKRETLKLIETFLDKAED------QPQ-I-----GKQNVPD 783 (1061)
Q Consensus 728 --~~~~i~---~~~~~~g~~~~~~~~~~~~~-------~~~~~il~ll~~~i~~~~~------~~~-l-----~~~~~~~ 783 (1061)
|.+++. ....+.|..- -..|.+- ..++-....++..+..... ++. + +.....+
T Consensus 696 r~ykqlv~ttv~ia~KvG~~~---~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt 772 (1172)
T KOG0213|consen 696 RNYKQLVDTTVEIAAKVGSDP---IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT 772 (1172)
T ss_pred cchhhHHHHHHHHHHHhCchH---HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc
Confidence 111111 1123344310 0011111 2233344455555544421 111 1 1012233
Q ss_pred cchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHh
Q 036770 784 ARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIAT 846 (1061)
Q Consensus 784 ~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~ 846 (1061)
..++..|..++.++..+|..+++++++|..-+.-. ++ ...|++|+.--++++++..
T Consensus 773 t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~r----Ln---nksa~vRqqaadlis~la~ 828 (1172)
T KOG0213|consen 773 TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWR----LN---NKSAKVRQQAADLISSLAK 828 (1172)
T ss_pred cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHH----hc---CCChhHHHHHHHHHHHHHH
Confidence 34567899999999999999999999988766533 22 3568999999999988765
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.04 Score=62.46 Aligned_cols=171 Identities=13% Similarity=0.203 Sum_probs=92.7
Q ss_pred HHhhHHHHH-HHHHhhCCCccc-cccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhc---
Q 036770 414 AVPLSKLRM-LMICRMAKPEEV-LIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQL--- 488 (1061)
Q Consensus 414 ~~~l~~L~~-~li~km~~p~e~-~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~--- 488 (1061)
++.+.+++. +++..|..-++. ..|++|-.|-+|......|.-...+...+.+..++.-..+.+..++...+++.+
T Consensus 182 ~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y 261 (370)
T PF08506_consen 182 KPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQY 261 (370)
T ss_dssp HHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455666655 556677665443 337777677666654333222223344455555554334445445544444433
Q ss_pred -cCCccccchhhHHHHHHHhhhCCCCh------h-----HHhHHHHH-HHHHHHHhhhhhcCCcchHHHHHhHHHHhccc
Q 036770 489 -SGEDWTWNNLNTLCWAIGSISGSMME------E-----QENRFLVM-VIRDLLNLCEMTKGKDNKAVIASNIMYVVGQY 555 (1061)
Q Consensus 489 -~~~~~~w~~le~~~~algsis~~~~~------~-----~e~~~l~~-vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y 555 (1061)
.++..+|+.-+++++.+|+++..... . .-.+|+.+ |++.|- +.. ...+.++..++..+..+
T Consensus 262 ~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~----~~~piLka~aik~~~~F 335 (370)
T PF08506_consen 262 ASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDV----NSHPILKADAIKFLYTF 335 (370)
T ss_dssp HH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-----S-HHHHHHHHHHHHHH
T ss_pred hhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc--ccC----CCCcchHHHHHHHHHHH
Confidence 24567999999999999999953311 0 01344433 344443 221 13344444455444444
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 036770 556 PRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTF 592 (1061)
Q Consensus 556 ~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f 592 (1061)
..-+ .++.+..+++.+..+++.++..|..-|+.++
T Consensus 336 r~~l--~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 336 RNQL--PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp GGGS---HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HhhC--CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3333 2568888999999999888888999888764
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.58 Score=56.68 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-cccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Q 036770 27 GTGSKEERTAADQILRDLQNN-PDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIV 102 (1061)
Q Consensus 27 ~~~~~~~r~~A~~~L~~fq~s-~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~ 102 (1061)
.+.+...|+-+.=++..+... ++....+..-+. .++|+.+|-.|+.+|-+.. +++-...+-..+...+
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll- 123 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLL- 123 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHh-
Confidence 345888899999999998874 454555554443 3578999999999998854 3444444444444444
Q ss_pred HhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccch-hHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHH
Q 036770 103 QLSSNEASFREERLYVNKLNIILVQILKHEWPARWRS-FIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQ 180 (1061)
Q Consensus 103 ~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~-~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~ 180 (1061)
.++ ..+||+|.+.++..+++.. |+.-+. +++.+.+.+... +.....++.++..+ +.. ++..
T Consensus 124 ---~~~-----~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-----~~~-~~~~-- 186 (526)
T PF01602_consen 124 ---SDP-----SPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-----KCN-DDSY-- 186 (526)
T ss_dssp ---HSS-----SHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-----HCT-HHHH--
T ss_pred ---cCC-----chHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-----ccC-cchh--
Confidence 333 3589999999999999984 776555 688888887643 44555566666655 100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC
Q 036770 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP 246 (1061)
Q Consensus 181 r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~ 246 (1061)
. .-.+.++..+.+++ ...++-+...+++++..+..+-+...- ...+++.+...+.
T Consensus 187 -----~----~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~-~~~~i~~l~~~l~ 241 (526)
T PF01602_consen 187 -----K----SLIPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDAD-KNRIIEPLLNLLQ 241 (526)
T ss_dssp -----T----THHHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHH-HHHHHHHHHHHHH
T ss_pred -----h----hhHHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhh-HHHHHHHHHHHhh
Confidence 0 12233333333333 234566677888888877754332210 0345555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.8 Score=55.59 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC--hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHH
Q 036770 114 ERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS--ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNS 191 (1061)
Q Consensus 114 ~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~ 191 (1061)
...||+|.+.+++.++...--.-+...+.+++..++.. ......+...|..++--.+. .+..
T Consensus 187 R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~----------------r~~~ 250 (1233)
T KOG1824|consen 187 RLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH----------------RFGS 250 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc----------------hhhc
Confidence 36799999999999998874456777888888777654 23344456666666554321 1223
Q ss_pred HHHHHHHHHHHHHhh--cCcHHHHHHHHHHHHhcccccCcchh-cchhhHHHHHhhCC-Ccc
Q 036770 192 EFQLIHELCLYVLSA--SQRTDLIRATLSTLHAFLSWIPLGYI-FESPLLETLLKFFP-MPS 249 (1061)
Q Consensus 192 ~~~~I~~~~~~~L~~--~~~~~l~~~~L~~l~~~l~wi~~~~i-~~~~ll~~l~~~L~-~~~ 249 (1061)
+.+.+..++.+..+. ..+.++++.+|+.+.+|+...|.+.. .-+.+++++.+++. ||.
T Consensus 251 h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 251 HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCC
Confidence 555566665555533 24678999999999999998886632 22577777776655 453
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.64 Score=53.25 Aligned_cols=281 Identities=12% Similarity=0.139 Sum_probs=127.9
Q ss_pred cchhhHHHHHHHhhhCCCChhHH-hHHHHHHHH-HHHHhhhhhcCCcchHHHHHhHHHHhccchHHH----HHhH----H
Q 036770 495 WNNLNTLCWAIGSISGSMMEEQE-NRFLVMVIR-DLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL----RAHW----K 564 (1061)
Q Consensus 495 w~~le~~~~algsis~~~~~~~e-~~~l~~vi~-~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l----~~~~----~ 564 (1061)
....++..||+|+|++.+..-.. ...++-+++ .+.++.++ +.+..+..|..-.+.+-+ +.-+ +
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-------p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~ 494 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-------PFRSINCSWRKENLVDHIAKAVREVESFLAK 494 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-------chHHhhhHHHHHhHHHhhhhhhccccchhHH
Confidence 34568889999999986532211 123333333 45555543 233444555433332222 1112 3
Q ss_pred HHHHHHHHHHHhhh--cCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh----cCCcchH----
Q 036770 565 FLKTVVNKLFEFMH--ETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA----DLEPHQI---- 634 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~--~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~----~l~~~~~---- 634 (1061)
|-+.+++.|+.+.. ......+..+..++-.+..-|.....+.- -.++.-+...+.+..+ .+..+++
T Consensus 495 fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~----a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~ 570 (858)
T COG5215 495 FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL----AGFYDYTSKKLDECISVLGQILATEDQLLVE 570 (858)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44667777776331 12234566666677666666654332210 0133333344433221 1222222
Q ss_pred ---HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhH
Q 036770 635 ---HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFL 711 (1061)
Q Consensus 635 ---~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~ 711 (1061)
..+..-+..+|..-+.+- ...-++||..+...++. . .+... --.++-.++.+..++++.|.
T Consensus 571 elqSN~~~vl~aiir~~~~~i--e~v~D~lm~Lf~r~les----~--~~t~~--------~~dV~~aIsal~~sl~e~Fe 634 (858)
T COG5215 571 ELQSNYIGVLEAIIRTRRRDI--EDVEDQLMELFIRILES----T--KPTTA--------FGDVYTAISALSTSLEERFE 634 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHhc----c--CCchh--------hhHHHHHHHHHHHHHHHHHH
Confidence 222223333333333210 11222333333332221 1 11000 01223344556667777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcc--hHH
Q 036770 712 SQISVIFLDMLNVYKMYSELISSS-ISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDAR--ESE 788 (1061)
Q Consensus 712 ~~~~~i~~~ll~~y~~~~~~i~~~-~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r--~~~ 788 (1061)
.+.+.+.|-+....+.....+... +...| +.-+++...+.++-..+++.. .+.+. +....| .|.
T Consensus 635 ~y~~~fiPyl~~aln~~d~~v~~~avglvg---------dlantl~~df~~y~d~~ms~L--vQ~ls--s~~~~R~lKPa 701 (858)
T COG5215 635 QYASKFIPYLTRALNCTDRFVLNSAVGLVG---------DLANTLGTDFNIYADVLMSSL--VQCLS--SEATHRDLKPA 701 (858)
T ss_pred HHHhhhhHHHHHHhcchhHHHHHHHHHHHH---------HHHHHhhhhHHHHHHHHHHHH--HHHhc--ChhhccccchH
Confidence 888877777765543332222111 11111 111222222222222222211 01111 222334 488
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHH
Q 036770 789 VLSLFATIINKYKGAMIDDVPRIFEAI 815 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~~~~~l~~i~~~l 815 (1061)
+|++++.|...+|.++.++|..|+..+
T Consensus 702 iLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 702 ILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999988777443
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=1.4 Score=52.06 Aligned_cols=144 Identities=15% Similarity=0.248 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHH
Q 036770 90 RDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 90 ~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE 168 (1061)
..-|-+-++.++.. +.+|+|.|...++=.++.+. |+.-...|+.+.+.+..+ +...-.+ ..++||
T Consensus 142 ARDLa~Dv~tLL~s---------skpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAA---V~VICE- 207 (877)
T KOG1059|consen 142 ARDLADDVFTLLNS---------SKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAA---VSVICE- 207 (877)
T ss_pred hHHHHHHHHHHHhc---------CchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHH---HHHHHH-
Confidence 33455556665533 13689999888888888874 777777778888877654 3333222 345555
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCc
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMP 248 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~ 248 (1061)
+..-... +.-.+...++.+|..+.+.=+....++.+++.. |++--.-..+++.+..++++.
T Consensus 208 LArKnPk----------------nyL~LAP~ffkllttSsNNWmLIKiiKLF~aLt---plEPRLgKKLieplt~li~sT 268 (877)
T KOG1059|consen 208 LARKNPQ----------------NYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALT---PLEPRLGKKLIEPITELMEST 268 (877)
T ss_pred HHhhCCc----------------ccccccHHHHHHHhccCCCeehHHHHHHHhhcc---ccCchhhhhhhhHHHHHHHhh
Confidence 2221110 111222334444444444446667777777766 333233346666666666554
Q ss_pred cchHHHHHHHHHHhcCcC
Q 036770 249 SYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 249 ~~~~~a~~cL~ei~~~~~ 266 (1061)
.--..--+|+..+++.++
T Consensus 269 ~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 269 VAMSLLYECVNTVVAVSM 286 (877)
T ss_pred HHHHHHHHHHHHheeehh
Confidence 444556788888887654
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.85 Score=52.99 Aligned_cols=304 Identities=14% Similarity=0.246 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh-----cCCcchHHHHHH
Q 036770 565 FLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA-----DLEPHQIHTFYE 639 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~-----~l~~~~~~~l~e 639 (1061)
+++.++..||..+..+...=-+...++++|++..++....+ +...+++.+..+.. .-.+.=.+++||
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p--------~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP--------IAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG--------GHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 56777888887553211111356678889998887776654 77777777776542 123445789999
Q ss_pred HHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHH
Q 036770 640 SVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719 (1061)
Q Consensus 640 aig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~ 719 (1061)
++|.+|....... ...+..+-+.+...++.++++.-++. -|-+-+.+..+++... ...++..| ..++|
T Consensus 95 si~~lir~~~~~~--~~~v~~~E~~L~P~f~~ILq~dV~EF----~PYvfQIla~Lle~~~--~~~~p~~y----~~L~~ 162 (435)
T PF03378_consen 95 SIGALIRFVCEAD--PEAVSQFEEALFPPFQEILQQDVQEF----IPYVFQILAQLLELRP--SSPLPDAY----KQLFP 162 (435)
T ss_dssp HHHHHHHHS-GGG--HH---HHHHHHHHHHHHHHHTT-TTT----HHHHHHHHHHHHHHSS----S--TTT----GGGHH
T ss_pred HHHHHHHhccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCC--CCCCcHHH----HHHHH
Confidence 9999998766432 12222222222223334554311110 1222222233333221 11222222 22333
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCC-------hhhhh---hc--CCCCcchH
Q 036770 720 DMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAED-------QPQIG---KQ--NVPDARES 787 (1061)
Q Consensus 720 ~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~-------~~~l~---~~--~~~~~r~~ 787 (1061)
.++ ...+|..... + ..+.+++..|+.+.+. ++.+. +. +.. .-+.
T Consensus 163 ~Ll----------~p~lWe~~gn------i-------PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk-~~D~ 218 (435)
T PF03378_consen 163 PLL----------SPALWERRGN------I-------PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK-ANDH 218 (435)
T ss_dssp HHT----------SGGGGGSTTT------H-------HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T-TCHH
T ss_pred HHc----------CcchhccCCC------c-------CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC-Ccch
Confidence 332 1223321110 1 1222344444443311 11110 00 111 1345
Q ss_pred HHHHHHHHHHHhhhc-cCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhh-chhHhhc----CChHHHH
Q 036770 788 EVLSLFATIINKYKG-AMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATH-CFPALIR----LSSQQLK 861 (1061)
Q Consensus 788 ~~L~l~~~li~~~~~-~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~-~~~~l~~----~~~~~~~ 861 (1061)
.-.+++..++..+.. .+.++++.|+..++...-. ..-+..++.|..|+..++-+ .+..+.. +.+..|.
T Consensus 219 ~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~------skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~ 292 (435)
T PF03378_consen 219 YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQS------SKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFG 292 (435)
T ss_dssp HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHH------C--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh------CCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHH
Confidence 677899999988877 4688999999988877432 24467888888888776553 4444432 3456777
Q ss_pred HHHHHHH-HHhcC-CChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccC
Q 036770 862 LVMDSII-WAFRH-TERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDT 921 (1061)
Q Consensus 862 ~~~~~i~-~~~~~-~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~ 921 (1061)
.++..+. -..+. ..+.--|.|.--+.+++.... ....+ |.+..-.++..+..++..+
T Consensus 293 ~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~--~~~~~-~~~~w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 293 MILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP--AFLSE-YSQLWPPLLEALLKLLERP 351 (435)
T ss_dssp HHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST--THHHH--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH--hhhhH-HHHHHHHHHHHHHHHHcCC
Confidence 7777643 22332 222223444444556654432 22222 3333444444444444433
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.42 E-value=3.2 Score=49.50 Aligned_cols=325 Identities=15% Similarity=0.220 Sum_probs=151.5
Q ss_pred HHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHh
Q 036770 542 AVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSG 621 (1061)
Q Consensus 542 ~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~ 621 (1061)
-.+.+ .+.++|+|-.|+.-+---=...++.|+++|.- +.++.+||.++..++.+= +-+ -+..++++.+-+.
T Consensus 208 gl~~~-cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~i--eelR~aac~cilaiVsKk---MkP---~dKL~lln~L~q~ 278 (980)
T KOG2021|consen 208 GLINS-CLDCIGSFVSWIDINLIANDYFLNLLYKFLNI--EELRIAACNCILAIVSKK---MKP---MDKLALLNMLNQT 278 (980)
T ss_pred hHHHH-HHHHHHHHhhhhhhhhhhchhHHHHHHHHHhH--HHHHHHHHHHHHHHHhcC---CCh---hHHHHHHHHHHHH
Confidence 34555 56799999999875322223446667777653 579999999999999753 222 1234565555333
Q ss_pred HHHhhhcC--CcchHHHHHHHHhhhhccCCCH--------------HHHHHHHHHHhhchHHHHHHHHHHHhccccccCC
Q 036770 622 LATTVADL--EPHQIHTFYESVGHMIQAESDV--------------QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKD 685 (1061)
Q Consensus 622 l~~~~~~l--~~~~~~~l~eaig~li~~~~~~--------------~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d 685 (1061)
++. .+-. +...-..+.|.++.+|.+.+.+ ..++..+..++... --+-+.+. + .+
T Consensus 279 l~l-fg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~v-pyllq~l~----~----e~ 348 (980)
T KOG2021|consen 279 LEL-FGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIV-PYLLQFLN----N----EF 348 (980)
T ss_pred HHH-HhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHH-HHHHHHhc----c----cc
Confidence 322 1111 1112345666666666654432 11223333333311 11111111 1 12
Q ss_pred HHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHH
Q 036770 686 QDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIET 765 (1061)
Q Consensus 686 ~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~ 765 (1061)
.+....+...+.-..+.-|+++..-.++...+-..++.+++... -..........+.....-.+..+|+....+..+
T Consensus 349 ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqic---ydemy~nddn~tg~EeEa~f~e~RkkLk~fqdt 425 (980)
T KOG2021|consen 349 DDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQIC---YDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDT 425 (980)
T ss_pred hhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHh---ccHHhhcccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 22223344444444444455443223333333233333332110 000000000111111122223333333333333
Q ss_pred HHhhCCCh------hhhhh--cCCCCcc--hHH-HHHHHHHHHHhhhccC----CCChHHHHHHHHHHhHHhhhhcc--C
Q 036770 766 FLDKAEDQ------PQIGK--QNVPDAR--ESE-VLSLFATIINKYKGAM----IDDVPRIFEAIFQCTLEMITKNF--E 828 (1061)
Q Consensus 766 ~i~~~~~~------~~l~~--~~~~~~r--~~~-~L~l~~~li~~~~~~~----~~~l~~i~~~l~~~tl~~i~~~~--~ 828 (1061)
....-+.+ +.+.. .+.++.+ ..+ .++++=.+-...++.. ...+. --..+++-..-+++..+ .
T Consensus 426 i~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s-~~~vl~~~~~ll~tsqv~~h 504 (980)
T KOG2021|consen 426 IVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDIS-TSQVLFLNELLLMTSQVLAH 504 (980)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCcccc-HHHHHHHHHHHHHHcccccC
Confidence 32211110 00110 1334333 222 3555555544443321 11111 01133322222334333 4
Q ss_pred CChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHH--HHhcCCChhHHHHHHHHHHHHHHhcc
Q 036770 829 DYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSII--WAFRHTERNIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 829 ~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~--~~~~~~~~~i~~~~l~~l~~l~~~~~ 894 (1061)
+||-+..-|++++.+ ...|++.+++.+..+++..+ .|+.|..-.+...+--.+.++++...
T Consensus 505 ~h~lVqLlfmE~ivR-----Y~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk 567 (980)
T KOG2021|consen 505 DHELVQLLFMELIVR-----YNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK 567 (980)
T ss_pred CchHHHHHHHHHHHH-----HHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH
Confidence 566677788887776 45677778888899999887 89999888888777666777777754
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=4.4 Score=50.39 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhc-Ccc-cHHHHHHHHc--cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHH
Q 036770 19 DATVAAFYGTGSKEERTAADQILRDLQN-NPD-MWLQVVHILQ--NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMK 94 (1061)
Q Consensus 19 ~~av~~ly~~~~~~~r~~A~~~L~~fq~-s~~-aw~~~~~iL~--~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr 94 (1061)
-.++. +..++|.+.|+-..-+|..+-+ .|+ +...+..+.. .++|+.+|-.|+.+|-..-. ..+-
T Consensus 71 ~dVvk-~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----------~~i~ 138 (746)
T PTZ00429 71 VDVVK-LAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----------SSVL 138 (746)
T ss_pred HHHHH-HhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----------HHHH
Confidence 33444 3344578889999999988877 666 4444444443 35688999999988866221 2234
Q ss_pred HHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccc--hhHHHHHHHccC-ChhHHHHHHHHHHHHHHH
Q 036770 95 NYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWR--SFIPDLVAAAKT-SETICENCMAILKLLSEE 168 (1061)
Q Consensus 95 ~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp--~~i~~l~~~~~~-~~~~~~~~L~iL~~l~EE 168 (1061)
+.++..+.+...+. ..+||++.+.++..++... |+.-+ ++++.+..++.. ++...-+.+..|..+.++
T Consensus 139 e~l~~~lkk~L~D~-----~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EYTLEPLRRAVADP-----DPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 45555555544443 4789999999999998765 54322 455666665543 445666777777777654
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=5.7 Score=45.95 Aligned_cols=272 Identities=13% Similarity=0.209 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhh
Q 036770 565 FLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHM 644 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~l 644 (1061)
|+..++.-++.+.+++...|+..||.++..||+-||..... |.++|...+..+..+-+. ....-.|-+-.+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--------~Fn~iFdvL~klsaDsd~-~V~~~aeLLdRL 151 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--------YFNEIFDVLCKLSADSDQ-NVRGGAELLDRL 151 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--------chHHHHHHHHHHhcCCcc-ccccHHHHHHHH
Confidence 66667777777777778889999999999999999987775 788888888776544322 223334444444
Q ss_pred hccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHH
Q 036770 645 IQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNV 724 (1061)
Q Consensus 645 i~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~ 724 (1061)
+.....+....--+..++..+..++-. .++.+..-+..-+..+-+ .-+-.+..+++.+++.+++.
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~------------~n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~ 216 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYV------------INPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNM 216 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhc------------CCchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHH
Confidence 444333322122333444444333211 133333333333333221 11124555556666655433
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhC---C------C-hhhhhhc---CCCCcchHHHHH
Q 036770 725 YKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKA---E------D-QPQIGKQ---NVPDARESEVLS 791 (1061)
Q Consensus 725 y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~---~------~-~~~l~~~---~~~~~r~~~~L~ 791 (1061)
.. +. ...+|.+...+ +..|+..+ + + .+.+..+ +.|..+ -..|.
T Consensus 217 Ls--------------D~------s~eVr~~~~t~---l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq-~~al~ 272 (675)
T KOG0212|consen 217 LS--------------DS------SDEVRTLTDTL---LSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQ-LKALT 272 (675)
T ss_pred hc--------------CC------cHHHHHHHHHH---HHHHHHHHhcCccccCcccchhhccccccCCcHHHH-HHHHH
Confidence 21 10 11122222221 12222211 1 1 1111110 111111 12466
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCC----hHHHHHHHHHH
Q 036770 792 LFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLS----SQQLKLVMDSI 867 (1061)
Q Consensus 792 l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~----~~~~~~~~~~i 867 (1061)
-+..+|.-.|.+.-++++.|+..+..|. . +.++....+++.+. +.....++..+ .-.+..+++.+
T Consensus 273 Wi~efV~i~g~~~l~~~s~il~~iLpc~----s----~~e~~~i~~~a~~~---n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 273 WIQEFVKIPGRDLLLYLSGILTAILPCL----S----DTEEMSIKEYAQMV---NGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred HHHHHhcCCCcchhhhhhhhhhhcccCC----C----CCccccHHHHHHHH---HHHHHHHHhhhhhccccchHHHHHHH
Confidence 6666677777777777777777766552 2 22222122222221 11112222211 12466888888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 868 IWAFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 868 ~~~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
..-+++.-.+.--.+++-+..+.++..+
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 8888887777777777777776666543
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.65 E-value=4 Score=48.86 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=78.5
Q ss_pred CHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHH
Q 036770 472 DHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIM 549 (1061)
Q Consensus 472 ~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~ 549 (1061)
++.+....+.+.|...+.. .+-.....+|+.+|.+++.-.... ..+ ..+++.++....+.. ..-+..++.++
T Consensus 70 ~~~~l~~~~~~~L~~gL~h--~~~~Vr~l~l~~l~~~~~~~~~~~--~~~~~~~l~~~i~~~L~~~d--~~Va~~A~~~L 143 (503)
T PF10508_consen 70 SPDSLLPQYQPFLQRGLTH--PSPKVRRLALKQLGRIARHSEGAA--QLLVDNELLPLIIQCLRDPD--LSVAKAAIKAL 143 (503)
T ss_pred CHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCHHHH--HHhcCccHHHHHHHHHcCCc--HHHHHHHHHHH
Confidence 3555444555555554432 344556678999999886532211 111 123333333222210 01122233333
Q ss_pred HHhccchHHHHHhHHHH-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhc
Q 036770 550 YVVGQYPRFLRAHWKFL-KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVAD 628 (1061)
Q Consensus 550 ~~ig~y~~~l~~~~~~L-~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~ 628 (1061)
.-++.++.-++. .+ +..+..|-..+..+++.++-++..++.++++.....+... ....+++.++..+. .
T Consensus 144 ~~l~~~~~~~~~---l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~---~~sgll~~ll~eL~----~ 213 (503)
T PF10508_consen 144 KKLASHPEGLEQ---LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV---VNSGLLDLLLKELD----S 213 (503)
T ss_pred HHHhCCchhHHH---HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH---HhccHHHHHHHHhc----C
Confidence 334444332211 11 1115555555656567899999999999987655443321 01124444444332 1
Q ss_pred CCcchHHHHHHHHhhhhc
Q 036770 629 LEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 629 l~~~~~~~l~eaig~li~ 646 (1061)
=+.--+....|.++.+..
T Consensus 214 dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 214 DDILVQLNALELLSELAE 231 (503)
T ss_pred ccHHHHHHHHHHHHHHHc
Confidence 122236778888888877
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.35 E-value=8.8 Score=45.97 Aligned_cols=310 Identities=15% Similarity=0.193 Sum_probs=155.4
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTVVN 571 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~vl~ 571 (1061)
+-..++.+|-+++.+.+...+... .++..+.|.....+ +.+.|+...+..++++.+--..-.+.+ ..++.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-----~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTH-----PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 456788899999999888765532 45555554444443 223334434556666532111101111 33556
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCH
Q 036770 572 KLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDV 651 (1061)
Q Consensus 572 ~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~ 651 (1061)
.++..+.+++..|+..|+.++.++++. ...+....++ .++..+......-+...|.++||.+..+.+..++.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~-------~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDS-------NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCc-------chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 666677778889999999999999963 1111110000 01344444333334456889999999986654432
Q ss_pred HHHHHHHHH--HhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChh--hHHHHHHHHHHHHHHHHH
Q 036770 652 QKREEYLQR--LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTF--FLSQISVIFLDMLNVYKM 727 (1061)
Q Consensus 652 ~~~~~~l~~--Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~--f~~~~~~i~~~ll~~y~~ 727 (1061)
- .++.. +++.+...+ .+.+. .--.+.+.++..+|. ..+. |... ..+++.+.
T Consensus 195 ~---~~~~~sgll~~ll~eL--------------~~dDi-Lvqlnalell~~La~-~~~g~~yL~~-~gi~~~L~----- 249 (503)
T PF10508_consen 195 A---EAVVNSGLLDLLLKEL--------------DSDDI-LVQLNALELLSELAE-TPHGLQYLEQ-QGIFDKLS----- 249 (503)
T ss_pred H---HHHHhccHHHHHHHHh--------------cCccH-HHHHHHHHHHHHHHc-ChhHHHHHHh-CCHHHHHH-----
Confidence 1 12221 333222221 12111 122455566666665 2221 1111 01111111
Q ss_pred HHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhC-CChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCC
Q 036770 728 YSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKA-EDQPQIGKQNVPDARESEVLSLFATIINKYKGAMID 806 (1061)
Q Consensus 728 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~-~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~ 806 (1061)
..+... .++ .......|..+.+++.+...-...+..
T Consensus 250 -------------------------------------~~l~~~~~dp------~~~~~~l~g~~~f~g~la~~~~~~v~~ 286 (503)
T PF10508_consen 250 -------------------------------------NLLQDSEEDP------RLSSLLLPGRMKFFGNLARVSPQEVLE 286 (503)
T ss_pred -------------------------------------HHHhccccCC------cccchhhhhHHHHHHHHHhcChHHHHH
Confidence 111111 000 000111233444444443321111112
Q ss_pred ChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhc--hhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 036770 807 DVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHC--FPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884 (1061)
Q Consensus 807 ~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~--~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~ 884 (1061)
..|.++..+| .++.. ..|+.+..-|+-++.+.... ...+..-.++.++.++..+....++...++...+++
T Consensus 287 ~~p~~~~~l~----~~~~s---~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~ 359 (503)
T PF10508_consen 287 LYPAFLERLF----SMLES---QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH 359 (503)
T ss_pred HHHHHHHHHH----HHhCC---CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 2233443433 33332 45667777777777766532 222322234577888888888888888899999999
Q ss_pred HHHHHHHhcc
Q 036770 885 LLLEMLKNFQ 894 (1061)
Q Consensus 885 ~l~~l~~~~~ 894 (1061)
.+..++....
T Consensus 360 al~~il~~~~ 369 (503)
T PF10508_consen 360 ALASILTSGT 369 (503)
T ss_pred HHHHHHhcCC
Confidence 9999986654
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.15 Score=47.57 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHH-HHHHHHHHhhhhhcCCcchHHHHHhHHHHhc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLV-MVIRDLLNLCEMTKGKDNKAVIASNIMYVVG 553 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig 553 (1061)
+.++.+.+.+.. .+|...+.++|+++.++...++. ...++. .+++.++.+..+. + ..++...+++++
T Consensus 7 ~~i~~l~~~l~~------~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~----~-~~v~~~a~~~L~ 74 (120)
T cd00020 7 GGLPALVSLLSS------SDENVQREAAWALSNLSAGNNDN-IQAVVEAGGLPALVQLLKSE----D-EEVVKAALWALR 74 (120)
T ss_pred CChHHHHHHHHc------CCHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCC----C-HHHHHHHHHHHH
Confidence 344455555542 35888999999999999874322 334443 5666666655431 2 233334566877
Q ss_pred cchHHHHHhHHH-H-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 554 QYPRFLRAHWKF-L-KTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 554 ~y~~~l~~~~~~-L-~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
+.++.-...... . ..++..+...+++.+..++..|+.+|..+|+
T Consensus 75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 776554333332 2 2367777887777788999999999998873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.12 Score=46.30 Aligned_cols=59 Identities=17% Similarity=0.410 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcC
Q 036770 563 WKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL 629 (1061)
Q Consensus 563 ~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l 629 (1061)
.++++.+++-++..+.+++++||..||.++..|++.++..+.+ ++++|+..+.....+.
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--------~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--------YFNEIFDALCKLSADP 80 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHcCC
Confidence 4578888888888888889999999999999999999987765 6777777666554443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.15 E-value=16 Score=43.22 Aligned_cols=263 Identities=13% Similarity=0.118 Sum_probs=118.2
Q ss_pred HHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHH
Q 036770 558 FLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTF 637 (1061)
Q Consensus 558 ~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l 637 (1061)
++...-.-..+++..+++-+..+.+.+|.....++....-.....=. .++.. .+.+....-+...+...
T Consensus 86 ~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~--------~~~l~---~l~~ll~~~~~~~~~~a 154 (569)
T KOG1242|consen 86 HLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG--------EYVLE---LLLELLTSTKIAERAGA 154 (569)
T ss_pred hccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH--------HHHHH---HHHHHhccccHHHHhhh
Confidence 33333335567888888888888888888777766665543222111 12222 22222221223334444
Q ss_pred HHHHhhhhccCCCHHH-HHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH
Q 036770 638 YESVGHMIQAESDVQK-REEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV 716 (1061)
Q Consensus 638 ~eaig~li~~~~~~~~-~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~ 716 (1061)
-.+++.++...+-... ....+..+ ...+ ++-....+.+ ..+-+....+..+|.+|.|++-.
T Consensus 155 a~~~ag~v~g~~i~~~~~~~~l~~l--------~~ai----~dk~~~~~re------~~~~a~~~~~~~Lg~~~EPyiv~ 216 (569)
T KOG1242|consen 155 AYGLAGLVNGLGIESLKEFGFLDNL--------SKAI----IDKKSALNRE------AALLAFEAAQGNLGPPFEPYIVP 216 (569)
T ss_pred hHHHHHHHcCcHHhhhhhhhHHHHH--------HHHh----cccchhhcHH------HHHHHHHHHHHhcCCCCCchHHh
Confidence 4455554444332211 12222222 1111 1110001111 11223344567888899999998
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcch-HHHHHHHHH
Q 036770 717 IFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARE-SEVLSLFAT 795 (1061)
Q Consensus 717 i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~-~~~L~l~~~ 795 (1061)
++|.++.-+......+ +.+.....+.+ ++-+..|.-+.--+..+..-....+|. ...+.+++.
T Consensus 217 ~lp~il~~~~d~~~~V------------r~Aa~~a~kai----~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~ 280 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKV------------REAAVEAAKAI----MRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGA 280 (569)
T ss_pred hHHHHHHHhhccchhh------------hHHHHHHHHHH----HHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 8888765432111111 11111111111 111111111000000010000012232 235666665
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCC
Q 036770 796 IINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTE 875 (1061)
Q Consensus 796 li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 875 (1061)
+...-.......++.+...+. +.+. +.+|++|.++.+-+.++... . ....+..++..++-++.++.
T Consensus 281 m~~~ap~qLs~~lp~iiP~ls----evl~---DT~~evr~a~~~~l~~~~sv-----i--dN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 281 MADCAPKQLSLCLPDLIPVLS----EVLW---DTKPEVRKAGIETLLKFGSV-----I--DNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred HHHhchHHHHHHHhHhhHHHH----HHHc---cCCHHHHHHHHHHHHHHHHh-----h--ccHHHHHHHHHHHHHhcCcc
Confidence 554332222222333333332 2222 36899999999988887653 1 22246666777777777877
Q ss_pred hhHH
Q 036770 876 RNIA 879 (1061)
Q Consensus 876 ~~i~ 879 (1061)
..+-
T Consensus 347 ~~~~ 350 (569)
T KOG1242|consen 347 CYTP 350 (569)
T ss_pred cchH
Confidence 4443
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.1 Score=35.69 Aligned_cols=31 Identities=19% Similarity=0.528 Sum_probs=25.8
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHHHh
Q 036770 569 VVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 569 vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c 599 (1061)
+++.+++.+.++++.||.+|+.++..|++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3567777888999999999999999999865
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.62 E-value=6 Score=46.09 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=78.9
Q ss_pred hHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH-HhHHHHHHHHHHHHHhh
Q 036770 499 NTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR-AHWKFLKTVVNKLFEFM 577 (1061)
Q Consensus 499 e~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~-~~~~~L~~vl~~L~~~~ 577 (1061)
|..--+.|-+++++.-+ ++.+.|-.+|.++. .-+++ ++++- ++.+.+.++. ..-.+|.+++.-+-.++
T Consensus 299 nvt~ra~~vva~algv~-------~llpfl~a~c~Srk--Sw~aR-hTgir-i~qqI~~llG~s~l~hl~~l~~ci~~~l 367 (975)
T COG5181 299 NVTGRAVGVVADALGVE-------ELLPFLEALCGSRK--SWEAR-HTGIR-IAQQICELLGRSRLSHLGPLLKCISKLL 367 (975)
T ss_pred HHHHHHHHHHHHhhCcH-------HHHHHHHHHhcCcc--chhhh-chhhH-HHHHHHHHhCccHHhhhhhHHHHHHHHh
Confidence 44455666677666533 34454555665432 12222 23232 4444444442 23457777777666666
Q ss_pred hcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 578 HETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 578 ~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
.+.+..|+-+++.++..+++.....=.. -+++++.-+..-..+--.+.-..+..|.|.+|-.+..
T Consensus 368 ~D~~~~vRi~tA~alS~lae~~~Pygie--------~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~p 432 (975)
T COG5181 368 KDRSRFVRIDTANALSYLAELVGPYGIE--------QFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSP 432 (975)
T ss_pred hccceeeeehhHhHHHHHHHhcCCcchH--------HHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCCh
Confidence 6777789999999999999865543222 2466665555433333455567789999999977653
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.27 Score=38.84 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=40.2
Q ss_pred cchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 495 WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 495 w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
|...++++|++|.+++...+. ...+++.+++.|..+..+ +...|+.+.++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d-----~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQD-----DDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTS-----SSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhc
Confidence 677789999999988775443 467899999988877754 223556667888875
|
... |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.88 E-value=36 Score=41.11 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=84.3
Q ss_pred HHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHH
Q 036770 479 QMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRF 558 (1061)
Q Consensus 479 ~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~ 558 (1061)
.+.+.+.+.+.++ +-.....++-+++.+. .++ ..+.+++.+.++..+. +..+....++ .+. +.
T Consensus 79 l~~n~l~kdl~~~--n~~~~~lAL~~l~~i~---~~~----~~~~l~~~v~~ll~~~----~~~VRk~A~~-~l~---~i 141 (526)
T PF01602_consen 79 LIINSLQKDLNSP--NPYIRGLALRTLSNIR---TPE----MAEPLIPDVIKLLSDP----SPYVRKKAAL-ALL---KI 141 (526)
T ss_dssp HHHHHHHHHHCSS--SHHHHHHHHHHHHHH----SHH----HHHHHHHHHHHHHHSS----SHHHHHHHHH-HHH---HH
T ss_pred HHHHHHHHhhcCC--CHHHHHHHHhhhhhhc---ccc----hhhHHHHHHHHHhcCC----chHHHHHHHH-HHH---HH
Confidence 4455555544322 2233344555666654 333 3344445555544442 2233333233 333 44
Q ss_pred HHHhHHHHHH-HHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHH
Q 036770 559 LRAHWKFLKT-VVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTF 637 (1061)
Q Consensus 559 l~~~~~~L~~-vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l 637 (1061)
++..|+.++. +++.+...+.+++++|...|+.++..+ +|...... +++..++..+.++....++-.+..+
T Consensus 142 ~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~-------~~~~~~~~~L~~~l~~~~~~~q~~i 212 (526)
T PF01602_consen 142 YRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYK-------SLIPKLIRILCQLLSDPDPWLQIKI 212 (526)
T ss_dssp HHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHT-------THHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhh-------hhHHHHHHHhhhcccccchHHHHHH
Confidence 4556776666 577777777888899999999999998 43332211 2556666666665566677778888
Q ss_pred HHHHhhhhccCCC
Q 036770 638 YESVGHMIQAESD 650 (1061)
Q Consensus 638 ~eaig~li~~~~~ 650 (1061)
.+.++.+....+.
T Consensus 213 l~~l~~~~~~~~~ 225 (526)
T PF01602_consen 213 LRLLRRYAPMEPE 225 (526)
T ss_dssp HHHHTTSTSSSHH
T ss_pred HHHHHhcccCChh
Confidence 8888887655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.74 E-value=34 Score=40.55 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=63.5
Q ss_pred chHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChh-HHHHHHHHHHHHHHHhhhcccccccCCCchHHHHH
Q 036770 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPG-VQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSEL 618 (1061)
Q Consensus 540 ~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~-v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~i 618 (1061)
.+.-.+..+.++++.|..-.-.-+.++..+ ..+..+.++. .++.+.-+|...+..... ..+||+-.+
T Consensus 150 ~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l----~~ai~dk~~~~~re~~~~a~~~~~~~Lg~--------~~EPyiv~~ 217 (569)
T KOG1242|consen 150 ERAGAAYGLAGLVNGLGIESLKEFGFLDNL----SKAIIDKKSALNREAALLAFEAAQGNLGP--------PFEPYIVPI 217 (569)
T ss_pred HHhhhhHHHHHHHcCcHHhhhhhhhHHHHH----HHHhcccchhhcHHHHHHHHHHHHHhcCC--------CCCchHHhh
Confidence 334445555667776655444444455443 3334333232 344677777777765442 224687777
Q ss_pred HHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHH
Q 036770 619 LSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKR 654 (1061)
Q Consensus 619 l~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~ 654 (1061)
+..+-...++....-|....+|+-.+.++++....+
T Consensus 218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 777666666777788889999999999998875444
|
|
| >PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) | Back alignment and domain information |
|---|
Probab=91.59 E-value=4.2 Score=45.38 Aligned_cols=148 Identities=12% Similarity=0.160 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcccccCcchhcc----hhhHHHHH-hhC-CCccchH-HHHHHHHHHhcCcCCcchHHHHHHHHHHHHHH
Q 036770 212 LIRATLSTLHAFLSWIPLGYIFE----SPLLETLL-KFF-PMPSYRN-LTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQ 284 (1061)
Q Consensus 212 l~~~~L~~l~~~l~wi~~~~i~~----~~ll~~l~-~~L-~~~~~~~-~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~ 284 (1061)
+.+..|+-+..|++..+-...+. +++++.++ .+- +.|+.|+ .++.|+..++.+ .++...+.+..+++.+++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~k-l~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINK-LGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHH-HGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHH
Confidence 34456666666666555222222 34444433 332 3567774 477888888774 2111222334444444444
Q ss_pred HHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHH
Q 036770 285 LQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIR-VLESTQENISALLMGLEYLINISYVDETEVFKVCLDY 363 (1061)
Q Consensus 285 l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~-ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~f 363 (1061)
...++..+ -++-+++..++-.++.++.+.+.. ++.=+++... ..++.++-...|++.+|++.+++.
T Consensus 122 Tl~MI~~d----------~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~---~~idsi~wg~kh~~~~I~~~~L~~ 188 (319)
T PF08767_consen 122 TLPMINKD----------FEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK---LVIDSIVWGFKHTNREISETGLNI 188 (319)
T ss_dssp HHHHHSST----------SSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH---HHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHhh----------hhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH---HHHHHHHHHhCCCcHHHHHHHHHH
Confidence 43444221 123467888889999998888644 3333332222 234666666788999999999999
Q ss_pred HHHHHHHHHH
Q 036770 364 WNSFVLELFD 373 (1061)
Q Consensus 364 W~~l~~~l~~ 373 (1061)
-..+.+...+
T Consensus 189 l~~ll~~~~~ 198 (319)
T PF08767_consen 189 LLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887754
|
CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D. |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.58 E-value=40 Score=41.13 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcccccCcchhcc
Q 036770 159 MAILKLLSEEVFDFSRGEMTQQKIKELKQSLN-SEFQLIHELCLYVLSAS---QRTDLIRATLSTLHAFLSWIPLGYIFE 234 (1061)
Q Consensus 159 L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~-~~~~~I~~~~~~~L~~~---~~~~l~~~~L~~l~~~l~wi~~~~i~~ 234 (1061)
++.|+.+.. .+++..|...|--.+- .+-.+++.++.+.+++. .+--++..||.+++...+ .+..
T Consensus 73 ieclKLias-------~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s---~Ema-- 140 (866)
T KOG1062|consen 73 IECLKLIAS-------DNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---PEMA-- 140 (866)
T ss_pred hHHHHHhcC-------CCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---HHHh--
Confidence 555665532 3455566666655444 56678888888888873 333467788888877664 2211
Q ss_pred hhhHHHHHhhC--CCccchHHHHHHHHHHhcCcC
Q 036770 235 SPLLETLLKFF--PMPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 235 ~~ll~~l~~~L--~~~~~~~~a~~cL~ei~~~~~ 266 (1061)
+++.+-+-+++ .+|-+|.+|+-|...++.+.+
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 22333333333 577899999999999998754
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=90.81 E-value=13 Score=43.41 Aligned_cols=115 Identities=14% Similarity=0.223 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHhhh-ccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHH
Q 036770 786 ESEVLSLFATIINKYK-GAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVM 864 (1061)
Q Consensus 786 ~~~~L~l~~~li~~~~-~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~ 864 (1061)
.|.++.+++.+++... +.+.+....++..+..+.+ =+.+.-.-+.-+|+++++++.+..+.. .+++..++
T Consensus 134 ~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l-------We~~gniPalvrLL~a~i~k~~~~i~~--~~~l~~iL 204 (435)
T PF03378_consen 134 IPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL-------WERRGNIPALVRLLQAYIKKDPSFIVA--NNQLEPIL 204 (435)
T ss_dssp HHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG-------GGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch-------hccCCCcCcHHHHHHHHHHhCchhhcc--hhhHHHHH
Confidence 4778899999988776 3333333444444433322 233444567788999999999988743 22334333
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 036770 865 DSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFA 916 (1061)
Q Consensus 865 ~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~ 916 (1061)
.-...-+.+...| ..|+..|..++..+. .+.++.|...++...|.
T Consensus 205 gvFQkLi~sk~~D--~~gF~LL~~iv~~~p-----~~~l~~yl~~I~~lll~ 249 (435)
T PF03378_consen 205 GVFQKLIASKAND--HYGFDLLESIVENLP-----PEALEPYLKQIFTLLLT 249 (435)
T ss_dssp HHHHHHHT-TTCH--HHHHHHHHHHHHHS------HHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHCCCCcc--hHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHH
Confidence 3222222222222 347777777776663 23344444444444444
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.59 Score=54.16 Aligned_cols=138 Identities=14% Similarity=0.275 Sum_probs=87.4
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH--HHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW--KFLKTV 569 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~--~~L~~v 569 (1061)
+-.-.|-+.||+|.|+|.-. ...+++ ..+++.|+++.... .+....-++.|+++..++--.-.| +-+..+
T Consensus 165 ~~~v~eQavWALgNIagds~--~~Rd~vl~~g~l~pLl~~l~~~----~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i 238 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSP--DCRDYVLSCGALDPLLRLLNKS----DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI 238 (514)
T ss_pred cHHHHHHHHHHHhccccCCh--HHHHHHHhhcchHHHHHHhccc----cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 44567889999999999743 234444 34567777766542 332233447899998877654333 467888
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhh---hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCK---RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~---~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
++.|+..++...+.|...||+++..++..-- +.... .+ . +..+-.+...-+...+.-.+.++|.|+.
T Consensus 239 Lp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~---~g---v----v~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 239 LPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID---AG---V----VPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH---cc---c----hHHHHHHHcCCCcccccHHHhhccceee
Confidence 8888888888889999999999999985322 11111 01 1 1122222333344455667889999765
Q ss_pred c
Q 036770 647 A 647 (1061)
Q Consensus 647 ~ 647 (1061)
.
T Consensus 309 G 309 (514)
T KOG0166|consen 309 G 309 (514)
T ss_pred c
Confidence 4
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.95 E-value=9.4 Score=47.72 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=80.2
Q ss_pred hhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchH--------------------
Q 036770 498 LNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPR-------------------- 557 (1061)
Q Consensus 498 le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~-------------------- 557 (1061)
.+|+||.+=+++.+-.+..-+.++.++.+.|+.-.--.+.-.-+...++.+.+.|||.+.
T Consensus 445 RDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rs 524 (1133)
T KOG1943|consen 445 RDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRS 524 (1133)
T ss_pred HHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhh
Confidence 356555555555555554445677777776664221111111111112224457777333
Q ss_pred --------HHHHhHHHHHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhc
Q 036770 558 --------FLRAHWKFLKTVVNKLFE-FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVAD 628 (1061)
Q Consensus 558 --------~l~~~~~~L~~vl~~L~~-~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~ 628 (1061)
+++.++.|..++++-++. -+.+=.+.++..|++++.++...-.+.+... ++..++.... .
T Consensus 525 Ncy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~-------~L~~lld~~l----s 593 (1133)
T KOG1943|consen 525 NCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADY-------VLPPLLDSTL----S 593 (1133)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhccc-------chhhhhhhhc----C
Confidence 344456778888888887 2433357899999999999998887777752 4444444332 2
Q ss_pred CCcchHHHHHHHHhhhhcc
Q 036770 629 LEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 629 l~~~~~~~l~eaig~li~~ 647 (1061)
-+...+...+-|.|.++.+
T Consensus 594 ~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 594 KDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred CChHHhhhhHHHHHHHHHH
Confidence 2445566667677666654
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=89.47 E-value=11 Score=39.83 Aligned_cols=139 Identities=12% Similarity=0.230 Sum_probs=75.5
Q ss_pred ccccchhhHHHHHHHhhhC-CCChhHHhHH---HHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH-HHH
Q 036770 492 DWTWNNLNTLCWAIGSISG-SMMEEQENRF---LVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW-KFL 566 (1061)
Q Consensus 492 ~~~w~~le~~~~algsis~-~~~~~~e~~~---l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~-~~L 566 (1061)
+.+|.....++=-+.++.. ....+....+ +..++..+.....+ .+..+..+.+.+++....-+..+- .++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-----~Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-----LRSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-----H---HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 4579887766665555543 3111111222 22222333332222 333334445668887777776653 367
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhh--hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhh
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK--RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHM 644 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~--~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~l 644 (1061)
..+++.|+.-+.++...++..|..++..+++.|. ..+ + ...+.....+-++..|....+.+..+
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----------~---~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----------L---LEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----------H---HHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----------H---HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 8888888887777778899999999999999876 111 1 22222223444577788899999999
Q ss_pred hccCC
Q 036770 645 IQAES 649 (1061)
Q Consensus 645 i~~~~ 649 (1061)
+...+
T Consensus 159 l~~~~ 163 (228)
T PF12348_consen 159 LEKWG 163 (228)
T ss_dssp HTT--
T ss_pred HHHcc
Confidence 98888
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=88.74 E-value=3.9 Score=36.65 Aligned_cols=86 Identities=8% Similarity=0.144 Sum_probs=59.8
Q ss_pred hHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH-hHHHHHHHHHHHHHhh
Q 036770 499 NTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA-HWKFLKTVVNKLFEFM 577 (1061)
Q Consensus 499 e~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~-~~~~L~~vl~~L~~~~ 577 (1061)
...++++.+++-++... -..++..+++.++....+ ++.+.++. .++.+.+..+..+. ...++..++..|+...
T Consensus 4 ~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D---~d~rVRy~--AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDD---QDSRVRYY--ACEALYNISKVARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCC---CcHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999998887655 578899999988876654 23444443 44566666666543 2346677777777777
Q ss_pred hcCChhHHHHHHH
Q 036770 578 HETHPGVQDMACD 590 (1061)
Q Consensus 578 ~~~~~~v~~~A~~ 590 (1061)
.++++.|+..|+-
T Consensus 78 ~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 78 ADPDENVRSAAEL 90 (97)
T ss_pred cCCchhHHHHHHH
Confidence 8888999877753
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.50 E-value=15 Score=43.05 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
+.+.-+++.|...+.. .+-..+.-+|||++.+++.-.+...--.-..+++.|..+..+.. .+.+ .. .+..+|.
T Consensus 233 ~~v~~iLp~L~~ll~~--~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~---~~v~-~P-aLRaiGN 305 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHS--TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS---PKVV-TP-ALRAIGN 305 (514)
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC---cccc-cH-HHhhccc
Confidence 4455566666655422 23455566899999999765543222222233444444444421 2222 22 2236665
Q ss_pred c---hHHHHHhHHHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCC
Q 036770 555 Y---PRFLRAHWKFLKTVVNKLFEFMH-ETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLE 630 (1061)
Q Consensus 555 y---~~~l~~~~~~L~~vl~~L~~~~~-~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~ 630 (1061)
. .+..... -.-...+..|...+. ++.+.++..||+++..|+.....+.-..-..+ .+..++..+ ..-+
T Consensus 306 IvtG~d~QTq~-vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~---l~p~Li~~l----~~~e 377 (514)
T KOG0166|consen 306 IVTGSDEQTQV-VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDAN---LIPVLINLL----QTAE 377 (514)
T ss_pred eeeccHHHHHH-HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcc---cHHHHHHHH----hccc
Confidence 2 1111110 000122333333333 34455899999999999987665443321112 223333333 3446
Q ss_pred cchHHHHHHHHhhhhccCCCHH
Q 036770 631 PHQIHTFYESVGHMIQAESDVQ 652 (1061)
Q Consensus 631 ~~~~~~l~eaig~li~~~~~~~ 652 (1061)
++.+....=||+.+.+.-..+.
T Consensus 378 f~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred hHHHHHHHHHHHhhcccCCHHH
Confidence 7788888889998877765433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=29 Score=37.93 Aligned_cols=217 Identities=12% Similarity=0.087 Sum_probs=113.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 036770 17 LLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNY 96 (1061)
Q Consensus 17 ~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ 96 (1061)
..+.++..+.++ +...|..|...|.++. .+..+..+..++ .+.++.+|.+|+.+|-..-.. ... +..
T Consensus 24 ~~~~L~~~L~d~-d~~vR~~A~~aL~~~~-~~~~~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~------~~~----~~~ 90 (280)
T PRK09687 24 NDDELFRLLDDH-NSLKRISSIRVLQLRG-GQDVFRLAIELC-SSKNPIERDIGADILSQLGMA------KRC----QDN 90 (280)
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHhcC-cchHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC------ccc----hHH
Confidence 345555556555 6668999999997664 678888888876 557899999999999873211 100 112
Q ss_pred HHHHHHHh-hcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC-ChhHHHHHHHHHHHHHH-HHhc--
Q 036770 97 ISEVIVQL-SSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT-SETICENCMAILKLLSE-EVFD-- 171 (1061)
Q Consensus 97 ll~~l~~~-~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~-~~~~~~~~L~iL~~l~E-Ev~~-- 171 (1061)
.+..+... ..++ ...||...+.+|+.+.... +...+.++..+...... +..........|..+.. +..+
T Consensus 91 a~~~L~~l~~~D~-----d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L 164 (280)
T PRK09687 91 VFNILNNLALEDK-----SACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLL 164 (280)
T ss_pred HHHHHHHHHhcCC-----CHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHH
Confidence 23333322 1222 2456667777777764333 11235555555444332 22333333333322211 0000
Q ss_pred --cCcccchHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC
Q 036770 172 --FSRGEMTQQKIKELKQSLNS---EFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP 246 (1061)
Q Consensus 172 --~~~~~l~~~r~~~l~~~l~~---~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~ 246 (1061)
.-.+.-..-|.. --.++.. ..+.+...+...|.. .+..+...+...|+.+ -++..++.+++.|.
T Consensus 165 ~~~L~d~~~~VR~~-A~~aLg~~~~~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~---------~~~~av~~Li~~L~ 233 (280)
T PRK09687 165 INLLKDPNGDVRNW-AAFALNSNKYDNPDIREAFVAMLQD-KNEEIRIEAIIGLALR---------KDKRVLSVLIKELK 233 (280)
T ss_pred HHHhcCCCHHHHHH-HHHHHhcCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHcc---------CChhHHHHHHHHHc
Confidence 000000111111 1111221 134455555555542 3556666666666542 22456777777777
Q ss_pred CccchHHHHHHHHHHhc
Q 036770 247 MPSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 247 ~~~~~~~a~~cL~ei~~ 263 (1061)
++.++..|++.|-++.+
T Consensus 234 ~~~~~~~a~~ALg~ig~ 250 (280)
T PRK09687 234 KGTVGDLIIEAAGELGD 250 (280)
T ss_pred CCchHHHHHHHHHhcCC
Confidence 77777777777766654
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=86.27 E-value=57 Score=38.05 Aligned_cols=189 Identities=16% Similarity=0.221 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhH
Q 036770 62 KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFI 141 (1061)
Q Consensus 62 ~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i 141 (1061)
.++..|-.+++.+-..+++ |..=+ ....+-+.+.+.+ . ...+...+ ... ..-+.-+.-.++.|..|. =..++
T Consensus 202 ~~~~~~~~~~~~la~LvNK-~~~~~--~l~~~l~~~~~~~-~-~~~~~~~~-~~~-~~~~~Wi~KaLv~R~~~~-~~~~~ 273 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNK-WPDDD--DLDEFLDSLLQSI-S-SSEDSELR-PQA-LEILIWITKALVMRGHPL-ATELL 273 (415)
T ss_pred CChHHHHHHHHHHHHHHcC-CCChh--hHHHHHHHHHhhh-c-ccCCcchh-HHH-HHHHHHHHHHHHHcCCch-HHHHH
Confidence 3467788888888877776 54322 1222222222222 0 11111111 111 122222233344454443 24567
Q ss_pred HHHHHHccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 036770 142 PDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLN-SEFQLIHELCLYVLSASQRTDLIRATLSTL 220 (1061)
Q Consensus 142 ~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~-~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l 220 (1061)
..+++.+.... .....-+-+..|..+.-++ ++......+|---+ +-+..++..+.+..+.+. .+.....|.++
T Consensus 274 ~~L~~lL~~~~-~g~~aA~~f~il~~d~~~~----l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-~~~k~~yL~AL 347 (415)
T PF12460_consen 274 DKLLELLSSPE-LGQQAAKAFGILLSDSDDV----LNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-DEIKSNYLTAL 347 (415)
T ss_pred HHHHHHhCChh-hHHHHHHHHhhHhcCcHHh----cCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-hhhHHHHHHHH
Confidence 77777776532 2222233344443331111 11111111111111 234444444554444433 33667889999
Q ss_pred HhcccccCcchhcc--hhhHHHHHhhCC--CccchHHHHHHHHHHhcC
Q 036770 221 HAFLSWIPLGYIFE--SPLLETLLKFFP--MPSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 221 ~~~l~wi~~~~i~~--~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~ 264 (1061)
.+.++++|...+.. +.+++++++.|+ +++++..++++|..++.-
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999776554 689999998765 566899999999999984
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=85.48 E-value=13 Score=39.26 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=81.0
Q ss_pred hHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHH-HHHHHHhh
Q 036770 499 NTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTV-VNKLFEFM 577 (1061)
Q Consensus 499 e~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~v-l~~L~~~~ 577 (1061)
-.+|-+++.++..+... -+.++..+++.|+..+.. .+..++.....++..+.+... +.+.+ +..+..++
T Consensus 71 ~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~-----~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~ 140 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSH-FEPYADILLPPLLKKLGD-----SKKFIREAANNALDAIIESCS----YSPKILLEILSQGL 140 (228)
T ss_dssp HHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG--------HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHH
Confidence 34688888888766544 356677888888887764 334444434444444433322 22233 44455577
Q ss_pred hcCChhHHHHHHHHHHHHHHHhh---hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 578 HETHPGVQDMACDTFLKIVQKCK---RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 578 ~~~~~~v~~~A~~~f~~i~~~c~---~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
.+.+|.++..++..+..+..... ..+.. ..++..++..+.....+-+++-|...-+++..+.+..|.
T Consensus 141 ~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~------~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 141 KSKNPQVREECAEWLAIILEKWGSDSSVLQK------SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp T-S-HHHHHHHHHHHHHHHTT-----GGG--------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hCCCHHHHHHHHHHHHHHHHHccchHhhhcc------cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 78889999999999999998877 33322 124567777777666777777777777777777666654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=85.24 E-value=2.4 Score=33.26 Aligned_cols=47 Identities=13% Similarity=0.335 Sum_probs=34.4
Q ss_pred HhHHHHhccch----HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 036770 546 SNIMYVVGQYP----RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKI 595 (1061)
Q Consensus 546 s~i~~~ig~y~----~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i 595 (1061)
.+.++.+|+.. +.++ .+++.++..|+..+.++++.|+..||.++.+|
T Consensus 5 ~~A~~aLg~l~~~~~~~~~---~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 5 RAAAWALGRLAEGCPELLQ---PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHCTTTTTHHHHH---HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhHhcccHHHHH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 33555777532 3322 37888888899888888899999999998754
|
... |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.01 E-value=99 Score=36.66 Aligned_cols=306 Identities=16% Similarity=0.237 Sum_probs=144.8
Q ss_pred HhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh--HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 036770 517 ENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH--WKFLKTVVNKLFEFMHETHPGVQDMACDTFLK 594 (1061)
Q Consensus 517 e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~--~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~ 594 (1061)
.+.+++.+++.++.+..++ .+.++++ ...++|....-+++. .+.|.-+=+-|.+.+.+..|.|-.....++..
T Consensus 598 ~kp~l~~ivStiL~~L~~k---~p~vR~~--aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~ 672 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSK---PPDVRIR--AADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICS 672 (975)
T ss_pred cCcchHHHHHHHHHHhcCC---CccHHHH--HHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 4678899999888877653 2333333 345777777777753 23444444445567777788887777777777
Q ss_pred HHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhch--HHHHHHH
Q 036770 595 IVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLP--NQKWSEI 672 (1061)
Q Consensus 595 i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~--~~~~~~~ 672 (1061)
|...-+ |-..| |-+..|+..+..|..+-..+-+..-..-+|.|....|.-.-..+.+..-.+.+ ...|
T Consensus 673 I~sv~~--~~~mq-----pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--- 742 (975)
T COG5181 673 IYSVHR--FRSMQ-----PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--- 742 (975)
T ss_pred Hhhhhc--ccccC-----CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh---
Confidence 765433 22222 23677777766554322222222233444555544443110111222111111 1112
Q ss_pred HHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHH
Q 036770 673 IAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLL 752 (1061)
Q Consensus 673 ~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~ 752 (1061)
+.+..+....-+.| +++..|+ ..+...+++-.+.-. |..
T Consensus 743 ------------nKeiRR~A~~tfG~---Is~aiGP------qdvL~~LlnnLkvqe--------------------Rq~ 781 (975)
T COG5181 743 ------------NKEIRRNATETFGC---ISRAIGP------QDVLDILLNNLKVQE--------------------RQQ 781 (975)
T ss_pred ------------hHHHHHhhhhhhhh---HHhhcCH------HHHHHHHHhcchHHH--------------------HHh
Confidence 22222233444444 3444553 223333333222111 111
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhhc-CCCCcch-HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhcc-CC
Q 036770 753 RSVKRETLKLIETFLDKAEDQPQIGKQ-NVPDARE-SEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNF-ED 829 (1061)
Q Consensus 753 ~~~~~~il~ll~~~i~~~~~~~~l~~~-~~~~~r~-~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~-~~ 829 (1061)
|..-.-.+.++..+-.-+..+..+..+ ..|++.. -.+|.-++-+....|..-..++-.| .+|+.+.+ +.
T Consensus 782 RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~i--------tPlleDAltDr 853 (975)
T COG5181 782 RVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSI--------TPLLEDALTDR 853 (975)
T ss_pred hhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHhhhccc
Confidence 111111122222222222122222211 2333221 3477777777776666544443332 35555433 45
Q ss_pred ChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 036770 830 YPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEM 889 (1061)
Q Consensus 830 ~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l 889 (1061)
.|-||+.-.+++..+.-+|+..- ..+.+-.+++-+.-.+-.+.|.+...-.+.+..+
T Consensus 854 D~vhRqta~nvI~Hl~Lnc~gtg---~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 854 DPVHRQTAMNVIRHLVLNCPGTG---DEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred chHHHHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 78899999999999988887642 2233334444333333345555544433333333
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=82.15 E-value=29 Score=34.57 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=80.1
Q ss_pred cchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Q 036770 137 WRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRA 215 (1061)
Q Consensus 137 Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~ 215 (1061)
++.+...+.+.++++ +..+..++.+++.++++-.- +.+.++...-+..+..+|++...+.+...
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~---------------e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ 87 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW---------------EILLSHGSQWLRALLSILEKPDPPSVLEA 87 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH---------------HHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 344445555555553 45688899999999887310 23445677788888899998777888888
Q ss_pred HHHHHHhcccccCc-----chhcc---hhhHHHHHhhCCCccchHHHHHHHHHHhcCcC
Q 036770 216 TLSTLHAFLSWIPL-----GYIFE---SPLLETLLKFFPMPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 216 ~L~~l~~~l~wi~~-----~~i~~---~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~ 266 (1061)
+..++...+..+.- ..+.. +.+++.+++.++++...+.++++|..++...+
T Consensus 88 ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 88 AIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 88888887764321 12222 46666677777767778899999999998654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=80.77 E-value=21 Score=36.13 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=14.7
Q ss_pred hhhcCChhHHHHHHHHHHHHHHH
Q 036770 576 FMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 576 ~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
.+.++++.|++.|...|..+..+
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 33556666777777777666665
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.72 E-value=1.7e+02 Score=37.01 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=20.3
Q ss_pred hhhHHHHHhhCCCccchHHHHHHHHHHhcCcC
Q 036770 235 SPLLETLLKFFPMPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 235 ~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~ 266 (1061)
.+++..+.+. ++-+|..-..|+..|++...
T Consensus 92 enIl~~iv~~--p~~iRvql~~~l~~Ii~~D~ 121 (1010)
T KOG1991|consen 92 ENILETIVQV--PELIRVQLTACLNTIIKADY 121 (1010)
T ss_pred HHHHHHHHhC--chHHHHHHHHHHHHHHhcCC
Confidence 3555555433 33478889999999998644
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.46 E-value=1.5e+02 Score=36.42 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
+..-.+...+++-++.+ +--..-.++-++|.|+. +|...+..|.|-+ ++.+. +..+..-.++ .
T Consensus 103 dvllLltNslknDL~s~--nq~vVglAL~alg~i~s---~EmardlapeVe~----Ll~~~----~~~irKKA~L----c 165 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSS--NQYVVGLALCALGNICS---PEMARDLAPEVER----LLQHR----DPYIRKKAAL----C 165 (866)
T ss_pred HHHHHHHHHHHhhccCC--CeeehHHHHHHhhccCC---HHHhHHhhHHHHH----HHhCC----CHHHHHHHHH----H
Confidence 33344566666544221 22223345556666654 3433445555444 33331 2222222233 2
Q ss_pred chHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 555 YPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 555 y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
-.|+++.-|+.....+++.-..+++.|+||--.+...+..+|+.
T Consensus 166 a~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 166 AVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred HHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 35788888888888888888888888888877777777777765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1061 | ||||
| 3gjx_A | 1073 | Crystal Structure Of The Nuclear Export Complex Crm | 0.0 | ||
| 3gb8_A | 1071 | Crystal Structure Of Crm1SNURPORTIN-1 Complex Lengt | 0.0 | ||
| 4fgv_A | 1086 | Crystal Structure Of Free Crm1 (crystal Form 1) Len | 0.0 | ||
| 4gpt_C | 1060 | Crystal Structure Of Kpt251 In Complex With Crm1-ra | 0.0 | ||
| 4hb4_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 0.0 | ||
| 4hb2_C | 1023 | Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 | 0.0 | ||
| 4hat_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 0.0 | ||
| 3m1i_C | 1049 | Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex | 0.0 | ||
| 4hax_C | 1023 | Crystal Structure Of Crm1 Inhibitor Ratjadone A In | 0.0 | ||
| 4haw_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 0.0 | ||
| 4hay_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 0.0 | ||
| 4hb3_C | 1023 | Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked | 0.0 | ||
| 4haz_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 0.0 | ||
| 4hb0_C | 1023 | Crystal Structure Of Crm1 Inhibitor Leptomycin B In | 0.0 | ||
| 3vyc_A | 1033 | Crystal Structure Of Unliganded Saccharomyces Cerev | 0.0 | ||
| 1w9c_A | 321 | Proteolytic Fragment Of Crm1 Spanning Six C-Termina | 5e-75 | ||
| 2l1l_B | 127 | Nmr Solution Structure Of The Phi0 Pki Nes Peptide | 6e-54 | ||
| 3a6p_A | 1204 | Crystal Structure Of Exportin-5:rangtp:pre-Mirna Co | 1e-12 | ||
| 2x1g_F | 971 | Crystal Structure Of Importin13 - Mago-Y14 Complex | 2e-07 | ||
| 2h4m_A | 865 | Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 | 1e-06 | ||
| 2qmr_A | 890 | Karyopherin Beta2TRANSPORTIN Length = 890 | 1e-06 | ||
| 2ot8_A | 852 | Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len | 1e-06 | ||
| 1qbk_B | 890 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 1e-05 |
| >pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1- Snurportin1-Rangtp Length = 1073 | Back alignment and structure |
|
| >pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex Length = 1071 | Back alignment and structure |
|
| >pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1) Length = 1086 | Back alignment and structure |
|
| >pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 1060 | Back alignment and structure |
|
| >pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(537dltvk541/glceq)-ran-ranbp1 Length = 1023 | Back alignment and structure |
|
| >pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 | Back alignment and structure |
|
| >pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 1023 | Back alignment and structure |
|
| >pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 1049 | Back alignment and structure |
|
| >pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex With Crm1(k579a)-ran-ranbp1 Length = 1023 | Back alignment and structure |
|
| >pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548a)-ran-ranbp1 Length = 1023 | Back alignment and structure |
|
| >pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548e,k579q)-ran-ranbp1 Length = 1023 | Back alignment and structure |
|
| >pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In Excess Crm1 Inhibitor Leptomycin B Length = 1023 | Back alignment and structure |
|
| >pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1 Length = 1023 | Back alignment and structure |
|
| >pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1 Length = 1023 | Back alignment and structure |
|
| >pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae Crm1 (Xpo1p) Length = 1033 | Back alignment and structure |
|
| >pdb|1W9C|A Chain A, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat Repeats Length = 321 | Back alignment and structure |
|
| >pdb|2L1L|B Chain B, Nmr Solution Structure Of The Phi0 Pki Nes Peptide In Complex With Crm1-Rangtp Length = 127 | Back alignment and structure |
|
| >pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex Length = 1204 | Back alignment and structure |
|
| >pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971 | Back alignment and structure |
|
| >pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 | Back alignment and structure |
|
| >pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 | Back alignment and structure |
|
| >pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 | Back alignment and structure |
|
| >pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1061 | |||
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 0.0 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 0.0 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 1e-147 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 1e-139 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 1e-131 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 1e-116 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 1e-112 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 2e-13 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 3e-09 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 6e-05 |
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 | Back alignment and structure |
|---|
Score = 968 bits (2504), Expect = 0.0
Identities = 532/1080 (49%), Positives = 729/1080 (67%), Gaps = 41/1080 (3%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS 61
AA +L D SQ +D+ LLD V Y G ++ A ++L L+ +PD W +V IL+ S
Sbjct: 14 AARQLLDFSQKLDINLLDNVVNCLY-HGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS 72
Query: 62 KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKL 121
+N+NTK++ LQ+LE VIK RW LP Q +G+K Y+ +I++ SS+ +E++Y+ KL
Sbjct: 73 QNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKL 132
Query: 122 NIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQK 181
N+ILVQILK EWP W +FI D+V A++TSE++C+N M ILKLLSEEVFDFS G++TQ K
Sbjct: 133 NMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVK 192
Query: 182 IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241
K LK S+ +EF I +LC +V+ SQ L+ ATL TL FL+WIPLGYIFE+ L+ TL
Sbjct: 193 AKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTL 252
Query: 242 L-KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
+ KF +P +RN++L+CLTE+ ++ Y Q+ ++ + M+QL+ +LP TNI AY+
Sbjct: 253 IYKFLNVPMFRNVSLKCLTEIAGVSVSQ-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYS 311
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVC 360
+G +EQ FIQNL+LF +F K H ++LE AL+ L Y++ +S V+ETE+FK+C
Sbjct: 312 NGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC 371
Query: 361 LDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKL 420
L+YWN EL+ P + + RRQLY LSK+
Sbjct: 372 LEYWNHLAAELYR-------------ESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKV 418
Query: 421 RMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
R+LM+ RMAKPEEVL+VE++ G +VRE MKD D + YK MRETL+YL+HLD+ DTE M
Sbjct: 419 RLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIM 478
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
KKL Q++G +W+W NLNTLCWAIGSISG+M EE E RFLV VI+DLL LCE +GKDN
Sbjct: 479 TKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN 538
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
KA+IASNIMY+VGQYPRFLRAHWKFLKTVVNKLFEFMHETH GVQDMACDTF+KI QKC+
Sbjct: 539 KAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598
Query: 601 RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQR 660
R FV VQVGE PF+ E+L+ + T + DL+P Q+HTFYE+VG+MI A++D +E +++
Sbjct: 599 RHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEK 658
Query: 661 LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLD 720
MLLPNQ W II QA ++VD LKD + ++ + +IL+TN A+G F+ Q+ I+LD
Sbjct: 659 YMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLD 718
Query: 721 MLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG--- 777
MLNVYK SE IS++I + G +K ++ +R+VKRETLKLI ++ ++ D +
Sbjct: 719 MLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENF 778
Query: 778 ------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK 825
++NVP ARE EVLS A I+NK G + ++P+IF+A+F+CTL MI K
Sbjct: 779 VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK 838
Query: 826 NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNL 885
+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT RN+A+TGL +
Sbjct: 839 DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQI 898
Query: 886 LLEMLKNFQASE-FCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESG 944
L +L+N E FY+TYF I Q IF+V+TDT H G +H +L ++F LVE G
Sbjct: 899 LFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEG 958
Query: 945 LLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTF 1004
++ PL P NN MF+++Y LL ++FP++ A+V FV GL D+ F
Sbjct: 959 KISTPLN-----PGNPVNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAF 1013
Query: 1005 KNHIRDFLVQSKEFSAQDNKDLYAEE----AAAQRERERQRMLSIPGLIAPNEIQDEMVD 1060
K H+RDFLVQ KEF+ +D DL+ EE +E + + +S+PG++ P+EI +EM D
Sbjct: 1014 KEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1073
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 | Back alignment and structure |
|---|
Score = 907 bits (2345), Expect = 0.0
Identities = 440/1082 (40%), Positives = 658/1082 (60%), Gaps = 61/1082 (5%)
Query: 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS 61
A E + D S +D+ALLD V+ FY GS ++ A +IL Q+NPD W + ILQ S
Sbjct: 2 AMEGILDFSNDLDIALLDQVVSTFY-QGSGVQQKQAQEILTKFQDNPDAWQKADQILQFS 60
Query: 62 KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKL 121
N +KF AL +L+ +I +W LP + R G++N++ +I+ + ++ F+ ++ +NK
Sbjct: 61 TNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKS 120
Query: 122 NIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQK 181
++ LVQILK EWP W FIP+L+ ++ +S +CEN M +LKLLSEEVFDFS +MTQ K
Sbjct: 121 DLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAK 180
Query: 182 IKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241
LK S++ EF+ I +LC VL + LI ATL +L +L WIP YI+E+ +LE L
Sbjct: 181 ALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELL 240
Query: 242 L-KFFPMPSYRNLTLQCLTEVGALNFG---DFYNVQYVNMYNVFMVQLQT-ILPPTTNIP 296
KF P R +TL+CLTEV L D Q V + + Q+ T ++P T ++
Sbjct: 241 STKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLK 300
Query: 297 EAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEV 356
YA+ N +Q+F+Q+LA+F T++ + +LES + LL +YLI +S ++E E+
Sbjct: 301 ATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEEREL 360
Query: 357 FKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVP 416
FK LDYW++ V +LF ++ +Y
Sbjct: 361 FKTTLDYWHNLVADLFYEP--------------------------------LKKHIYEEI 388
Query: 417 LSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDT 476
S+LR+++I M +PEEVL+VE++ G IVRE +K++D + YK RE L+YL+HL+ DT
Sbjct: 389 CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT 448
Query: 477 EKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTK 536
E+ M+ KL++Q+ G +W+W+N+NTL WAIGSISG+M E+ E RF+V VI+DLL+L +
Sbjct: 449 EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR 508
Query: 537 GKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIV 596
GKDNKAV+AS+IMYVVGQYPRFL+AHW FL+TV+ KLFEFMHETH GVQDMACDTF+KIV
Sbjct: 509 GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIV 568
Query: 597 QKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREE 656
QKCK FVI Q E+EPF+ ++ + T ADL+P Q+HTFY++ G +I E V +R
Sbjct: 569 QKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNR 628
Query: 657 YLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV 716
L LM LPN W I+ Q+ + L D + ++ + NI++TN +V +++G F Q+
Sbjct: 629 LLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGH 688
Query: 717 IFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQI 776
I+ +ML +Y+ S +IS+ +++ G A+KT V+ LR++K+E LKL+ET++ KA + +
Sbjct: 689 IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDV 748
Query: 777 GKQ---------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLE 821
K NVPDAR++EVL+ T++ K + V I +++F+CTL+
Sbjct: 749 VKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLD 808
Query: 822 MITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAET 881
MI K+F +YPEHR++F+ LL+ I F A + L KL +D+I WAF+H R++
Sbjct: 809 MINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVN 868
Query: 882 GLNLLLEMLKNFQAS---EFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLF 938
GL + L+++KN + F N+F++ YF E F VLTD+ HK GF L+L L
Sbjct: 869 GLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928
Query: 939 CLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESR 998
LV ++ PL+ A +P +N +++ +Y +L +FP++T+ ++ F+ L +
Sbjct: 929 SLVYDNKISVPLYQEAEVP-QGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQY 987
Query: 999 NDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEE----AAAQRERERQRMLSIPGLIAPNEI 1054
DL FK +RDFLVQ KE L+AE+ Q ER++ I GL+ P+E+
Sbjct: 988 KDLVVFKGTLRDFLVQIKEVGGDPTDYLFAEDKENALMEQNRLEREKAAKIGGLLKPSEL 1047
Query: 1055 QD 1056
D
Sbjct: 1048 DD 1049
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
Score = 464 bits (1194), Expect = e-147
Identities = 139/1033 (13%), Positives = 331/1033 (32%), Gaps = 106/1033 (10%)
Query: 12 PMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFAL 71
V ++ + Y + E + A + L Q +P W +LQ K ++F
Sbjct: 20 DFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGA 79
Query: 72 QVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKH 131
L I W+ +P +Q + +K + I + +S +L + L +
Sbjct: 80 SALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVL------TRLCVALASLALS 133
Query: 132 EWPARWRSFIPDLVAAAKTSETICEN---CMAILKLLSEEVFDFSRGEMTQQKIKELKQS 188
P W + D+V + ++ + C+A+L+LL+ +F + Q + ++ S
Sbjct: 134 MMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTS 193
Query: 189 LNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE--SPLLETLLKFFP 246
L E + L +L +R L F SW+ L + L++
Sbjct: 194 LAVECGAVFPLLEQLLQQPSSPSCVRQK--VLKCFSSWVQLEVPLQDCEALIQAAFAALQ 251
Query: 247 MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEE 306
+ +++ + + Y N + + +L + +A +G+ E
Sbjct: 252 DSELFDSSVEAIVNAISQPDAQRY-------VNTLLKLIPLVLGLQEQLRQAVQNGDMET 304
Query: 307 QAFIQNLALFF-TSFFKFHIRVLESTQENISALLMGLEYL-INISYVDETEVFKVCLDYW 364
I +A+ + + + +E Q ++ + M + I Y + L +W
Sbjct: 305 SHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFW 364
Query: 365 NSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLM 424
+ ++ + +Q+Y +L ++
Sbjct: 365 YTLQDDILSFEAEKQAV---------------------------YQQVYRPVYFQLVDVL 397
Query: 425 ICRMAKP--EEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLK 482
+ + P EE + R D + +TL+Y+ + + +
Sbjct: 398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVD---------ISDTLMYVYEMLGAELLSNLYD 448
Query: 483 KLSKQLS--GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
KL + L+ E ++W + L + SI+ ++ + V+ L+ L + +
Sbjct: 449 KLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSD-----VVPGLIGLI--PRISIS 501
Query: 541 KAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600
+A +M+ +G +L H + +V+ + + +P + + T KI ++CK
Sbjct: 502 NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALG--NPELSVSSVSTLKKICRECK 559
Query: 601 RKFVIVQVGENEPFVSELLSGL--ATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYL 658
P+ + +++ + Q +++G ++ A ++ + L
Sbjct: 560 YDLP--------PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV-EEILKNL 610
Query: 659 QRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIF 718
L+ Q+ ++ + + L ++ + N+ T +
Sbjct: 611 HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPV 670
Query: 719 LDMLNVYKMYSELISSSISSGGPFASKTSYV--KLLRSVKRETLKLIETFLDKAEDQPQI 776
N + + + I + V + ++ L++ F ++
Sbjct: 671 PQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM 730
Query: 777 GKQNVPDARESEVLSLFATIINKYK--GAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHR 834
+ ++ L L +++ + A + +F + TL + + D+P+
Sbjct: 731 LGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIV 790
Query: 835 LKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQ 894
F LL P L +K V + A + E + E+L
Sbjct: 791 DSFMQLLAQALKRK-PDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG 849
Query: 895 ASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAA 954
E + + + + + + +L L
Sbjct: 850 EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKH-------------- 895
Query: 955 TIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQ 1014
+ + ++ G ++ + F +L R + K +++F +
Sbjct: 896 -----CFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLL 950
Query: 1015 SKEFSAQDNKDLY 1027
+ D Y
Sbjct: 951 CRGLHGTDYTADY 963
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 | Back alignment and structure |
|---|
Score = 444 bits (1142), Expect = e-139
Identities = 147/1068 (13%), Positives = 339/1068 (31%), Gaps = 150/1068 (14%)
Query: 12 PMDVALLD-ATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS--KNLNTKF 68
PM ++ A AA + + A + L+++ W I +T+
Sbjct: 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRL 61
Query: 69 FALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQI 128
LQ L ++ N + + +++ + I +LS + E N + +L +
Sbjct: 62 ICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLD----EPAYISNAVQHLLTLL 117
Query: 129 LKHEWPARWRSFIPDLVA--AAKTSETICENCMAILKLLSEEVFD--FSRGEMTQQKIKE 184
+P+ W F L AA + + +L + +E+ D + ++ QK
Sbjct: 118 FLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNL 177
Query: 185 LKQSL-NSEFQLIHEL---CLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLET 240
+K ++ ++ I + S ++ + L ++SWI + I P +
Sbjct: 178 VKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNL 237
Query: 241 LLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300
L F + R + +TE+ VN + +L + N+ + +
Sbjct: 238 LYSFLQIEELRCAACETMTEI-------------VNKKMKPLEKLNLLNILNLNLFFSKS 284
Query: 301 HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQEN--------ISALLMGLEYLINISYVD 352
S + F +++A + + + E L YLI D
Sbjct: 285 QEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD 344
Query: 353 ETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQL 412
E + + ++ L ++ E A
Sbjct: 345 YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEF------------------------- 379
Query: 413 YAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLD 472
L L +I +M E +D + E K ++ ++ +D
Sbjct: 380 ----LKSLLEAIIKKMKYDESQEWDDDPDSEEEAE------FQEMRKKLKIFQDTINSID 429
Query: 473 HEDTEKQMLKKLSKQLS-----GEDWTWNNLNTLCWAIG----SISGSMMEEQENRFLVM 523
M ++ LS + +W + + + G E
Sbjct: 430 SSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPT 489
Query: 524 VIRDLLN-LCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLF--EFMHET 580
V+ +L + + ++ M ++ +Y F + ++ +H T
Sbjct: 490 VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNT 549
Query: 581 HPGVQDMACDTFLKIVQKCKRKFV-------------IVQVGENEPFVSELLSGLATTVA 627
+ V+ A F + V+ K++ V + + + L +++
Sbjct: 550 NERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIR 609
Query: 628 DLEPHQIHTFYESVGHMIQAES-DVQKREEYLQRLMLLPNQKWSEIIAQARQSV-DFLKD 685
+ + + +E+VG +I + + +++ Y L+ K + ++ ++ + +
Sbjct: 610 NSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISV 669
Query: 686 QDVIRTVLNI---LQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPF 742
+ + N S A F IFL + + +E I
Sbjct: 670 YCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGF--NEDIRG-------- 719
Query: 743 ASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKG 802
A + + +++ V + L + + + + +VLS + +I+ YK
Sbjct: 720 AVRFTSGRIINVVGPDMLPKVPQLISILLNSIDM-------NELVDVLSFISQLIHIYKD 772
Query: 803 AMI----DDVPRIFEAIFQCTLEMITKNFE--DYPEHRLKFFSLLRAIATHCFPALIRLS 856
M+ +P + IF + + R + S + + F +++
Sbjct: 773 NMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTE 832
Query: 857 S--QQLKLVMDSII-WAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQE 913
+++SI+ +A E ++ + L+ +M+ + + + + +++
Sbjct: 833 ENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLW-GGKDGIAGFENFTLSLTPL 891
Query: 914 IFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIK 973
F + + Q L L E L + + + Y
Sbjct: 892 CFEMPVNPNFNTRDG------QSLVVLGELAGLQKIILEKLG------------DIYKSY 933
Query: 974 LLGTSFP--NMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFS 1019
L+ FP N ++++ L S D +FK + F+ K +
Sbjct: 934 LVTVYFPTVNFPDVMASEYLQAL--SNLDSRSFKQFFQKFIQALKSGN 979
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Length = 321 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-131
Identities = 146/326 (44%), Positives = 205/326 (62%), Gaps = 21/326 (6%)
Query: 711 LSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKA 770
+ Q+ I+LDMLNVYK SE IS++I + G +K ++ +R+VKRETLKLI ++ ++
Sbjct: 1 VIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRS 60
Query: 771 EDQPQIGKQ---------------NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAI 815
D + + NVP ARE EVLS A I+NK G + ++P+IF+A+
Sbjct: 61 NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAV 120
Query: 816 FQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTE 875
F+CTL MI K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT
Sbjct: 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTM 180
Query: 876 RNIAETGLNLLLEMLKNFQASE-FCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVL 934
RN+A+TGL +L +L+N E FY+TYF I Q IF+V+TDT H G +H +L
Sbjct: 181 RNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASIL 240
Query: 935 QHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGL 994
++F LVE G ++ L P NN +F++EY LL ++FP++ A+V FV GL
Sbjct: 241 AYMFNLVEEGKISTSLN-----PGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGL 295
Query: 995 LESRNDLSTFKNHIRDFLVQSKEFSA 1020
D+ FK H+RDFLVQ KEF+
Sbjct: 296 FSLNQDIPAFKEHLRDFLVQIKEFAG 321
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 | Back alignment and structure |
|---|
Score = 381 bits (979), Expect = e-116
Identities = 120/1052 (11%), Positives = 315/1052 (29%), Gaps = 129/1052 (12%)
Query: 11 QPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFA 70
+P+D+A L+ V +FY + S + + + L D + +P W ++Q K+ +FF
Sbjct: 2 EPIDIARLEEAVVSFYRSNS-QNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFG 60
Query: 71 LQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILK 130
L + W+ +P E R+ +K I E IV+ + N+L I L +
Sbjct: 61 AITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVL------NRLCISLGAYIV 114
Query: 131 HEWPARWRSFIPDLVAA-------AKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIK 183
H W I +++ +++ + +L + EE
Sbjct: 115 HMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRA 173
Query: 184 ELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE-------SP 236
E+ + + + ++ + + +WI +
Sbjct: 174 EIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAV 233
Query: 237 LLETLLKFFPMPSYRNLTLQCLTEVGALN------FGDFYNVQYVNMYNVFMVQLQTILP 290
LLE + K + + E N V ++ L
Sbjct: 234 LLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLD 293
Query: 291 PTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGL-------- 342
+ I + ++ + I ++ + F S + H +L S + L L
Sbjct: 294 SLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEI 353
Query: 343 --EYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVD 400
Y E + L +W E+F N+ +
Sbjct: 354 LHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKH------------------- 394
Query: 401 GIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQY-K 459
+ + + L +++ + +P+E + + + D + Y +
Sbjct: 395 -------KCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD--------DLECFRCYRQ 439
Query: 460 IMRETLIYLSHLDHEDTEK---QMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQ 516
+ +T +Y + ++ + ML + L W L ++ S++ E
Sbjct: 440 DISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE- 498
Query: 517 ENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEF 576
E R + ++R L + + + + +G Y +L + ++ +N L
Sbjct: 499 EKRQIPRLMRVLAEIPY----EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554
Query: 577 MHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGL--ATTVADLEPHQI 634
++ + + A ++ + C+ + P+ LL+ + ++
Sbjct: 555 LNSS---MSAQATLGLKELCRDCQLQLK--------PYADPLLNACHASLNTGRMKNSDS 603
Query: 635 HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLN 694
S+G ++ ++ +YL ++ ++ I ++ +++
Sbjct: 604 VRLMFSIGKLMSLLRP-EEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662
Query: 695 ILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVK-LLR 753
L ++ + + + L M ++ + + + S +K +
Sbjct: 663 TLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722
Query: 754 SVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKG--AMIDDVPRI 811
+++ +++ + + L + T I + + ++
Sbjct: 723 NLRSSFQPMLQDLCLFIV-------ASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQL 775
Query: 812 FEAIFQCTLEMI----TKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSI 867
Q + ++ +NF + + FF L I P ++ + ++
Sbjct: 776 LREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKI-PQVLEDKTLAYDRLVFYA 834
Query: 868 IWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGF 927
E + L + + + + +
Sbjct: 835 QRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQV 894
Query: 928 KLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEV 987
+L + Y + + +T A+
Sbjct: 895 DKFADILLAMNRK-------------------YAAEMAVWMKSLMSTPNFPTQLITDADK 935
Query: 988 TQFVDGLLESRNDLSTFKNHIRDFLVQSKEFS 1019
T++ +++ + + + H+ + ++++ +
Sbjct: 936 TRYTALIIKEKVNKRLLQQHLSEMAMKTRGLT 967
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 | Back alignment and structure |
|---|
Score = 375 bits (962), Expect = e-112
Identities = 135/946 (14%), Positives = 291/946 (30%), Gaps = 93/946 (9%)
Query: 8 DLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVV-HILQNSKNLNT 66
D + L+ A ++ R A + + + + + + + ++
Sbjct: 4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIV 63
Query: 67 KFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILV 126
+ F LQ+LE V+K+RWN + ++ +KN + E+I + N EE + L+ I+V
Sbjct: 64 RHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLN--ILEEENHIKDALSRIVV 121
Query: 127 QILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELK 186
+++K EWP W + +L +K ET E M IL L+E+V F + Q+ ++++
Sbjct: 122 EMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQT--LPPQRRRDIQ 179
Query: 187 QSLNSEFQLIHELCLYVL------------------SASQRTDLIRATLSTLHAFLSWIP 228
Q+L + I L L A + A L+TL ++ W+
Sbjct: 180 QTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS 239
Query: 229 LGYIFESPLLETLL--KFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQ 286
+ +I + + +CL + + ++ V +
Sbjct: 240 MSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLF--GDVAMH 297
Query: 287 TILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVL--ESTQENISALLMGLEY 344
IL + F++ L + +L +S E S LE
Sbjct: 298 YILSAAQTADGGGL--VEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLES 355
Query: 345 LINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGA 404
+ + + W + + + L + L + + +
Sbjct: 356 FLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAII--------PKYLRASMTNL-V 406
Query: 405 QLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRET 464
++ + + R + G ++R + +
Sbjct: 407 KMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWL 466
Query: 465 LIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAI------GSISGSMMEEQEN 518
LS D G + + + + W I+
Sbjct: 467 KYQLSTF--LDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNRE 524
Query: 519 RFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH 578
V +LL + KD +I S ++ V F+ +FL V +KLF +
Sbjct: 525 EIPVNDGIELLQMVLNFDTKDP--LILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVT 582
Query: 579 ETHPG------------VQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTV 626
V+ AC + +K+ + + + V +LLS
Sbjct: 583 FETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPN-FDMLYNHVKQLLS----NE 637
Query: 627 ADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQ 686
L + E++ + + ++++ +L+ LM W
Sbjct: 638 LLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHR----VLSDVD 693
Query: 687 DVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSE----------LISSSI 736
I V ++ +++S +L V K
Sbjct: 694 AFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGY 753
Query: 737 SSGGPFASKTSYVKLLRSVKRETLKLIETF--LDKAEDQPQIGK--QNVPDARESEVLSL 792
+S G + + + + L LI T L E ++ + D ++E ++
Sbjct: 754 TSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAI 813
Query: 793 -------FATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIA 845
+ +++ + R F +++ ++ K + L +
Sbjct: 814 LGLPQPLLELNDSPVFKTVLERMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLL 873
Query: 846 THCFPALIRLSSQQLKLVMDSIIWAF-RHTERNIAETGLNLLLEML 890
+ F L + +L+ ++ + E ++ +L L
Sbjct: 874 SSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPL 919
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 86.1 bits (212), Expect = 4e-17
Identities = 105/672 (15%), Positives = 206/672 (30%), Gaps = 191/672 (28%)
Query: 437 VEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGED--WT 494
V+D +I+ + D +++ + TL L +++M++K +++ + +
Sbjct: 38 VQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYKFL 94
Query: 495 WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554
+ + T S+ M EQ +R L N DN+ N+
Sbjct: 95 MSPIKTEQ-RQPSMMTRMYIEQRDR--------LYN--------DNQVFAKYNV------ 131
Query: 555 YPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDM--------ACDTFLKIVQKCKRKFVI- 605
R L+ + K L+ L E + + + A D L +CK F I
Sbjct: 132 -SR-LQPYLK-LR---QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 606 -VQVGE-NEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLML 663
+ + N P +L L + ++P + H + + + L+RL+
Sbjct: 186 WLNLKNCNSP--ETVLEMLQKLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 664 LPNQKWSEIIAQARQSVDFLKDQDVIRTVLN---ILQT--NTSVASALGTFFLSQISVIF 718
+ ++ + +++ IL T V L + IS+
Sbjct: 240 SKPYENCLLV------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 719 LDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLD-KAEDQPQIG 777
M E L+ +LD + +D P+
Sbjct: 294 HSM-------------------TL------------TPDEVKSLLLKYLDCRPQDLPREV 322
Query: 778 KQNVPDARESEVLSLFATII-------NKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDY 830
P LS+ A I + +K D + I E+ N +
Sbjct: 323 LTTNP-----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---------NVLEP 368
Query: 831 PEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEML 890
E+R F L ++ FP + + L S+IW ++ ++ + +++ L
Sbjct: 369 AEYRKMFDRL--SV----FPPSAHIPTILL-----SLIWF------DVIKSDVMVVVNKL 411
Query: 891 KNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPG--FKLHVLVLQH--LFCLVESGLL 946
+ E T I ++ + K + LH ++ H + +S L
Sbjct: 412 HKYSLVE-KQPKESTIS------IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 947 TEPLWD---AATIPY------PYPNNAMFVREYT------IKLLGTSFPNMTAAEVTQFV 991
P D + I + +F + K+ S +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG------ 518
Query: 992 DGLLESRNDLSTFKNHIRD--------------FLVQSKE------------FSAQDNKD 1025
+L + L +K +I D FL + +E + +
Sbjct: 519 -SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 1026 LYAEEAAAQRER 1037
EEA Q +R
Sbjct: 578 AIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 2e-15
Identities = 105/724 (14%), Positives = 217/724 (29%), Gaps = 236/724 (32%)
Query: 6 LRDLSQPMDVA-LLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHI----LQN 60
D + D + SKEE D I+ + D + + L
Sbjct: 26 EDAFVDNFDCKDVQDMPKSIL----SKEE---IDHII----MSKDAVSGTLRLFWTLLSK 74
Query: 61 SKNLNTKFFALQVLEGVIK--YRW--NALPVEQRD---GMKNYISEVIVQLSSNEASF-- 111
+ + KF E V++ Y++ + + EQR + YI + + N+ F
Sbjct: 75 QEEMVQKFV-----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAK 128
Query: 112 ----REERLYVNKLNIILVQILKHEWPARWRSFIPDLV-----AAAKTSETICENCMAIL 162
R + KL L++ L+ +++ + KT +A+
Sbjct: 129 YNVSRLQP--YLKLRQALLE-LRPA---------KNVLIDGVLGSGKT-------WVALD 169
Query: 163 KLLSEEV---FDF-----SRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIR 214
LS +V DF + + + + L L++++ + + R+D
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKN--CNSPETVLEMLQK---LLYQI---DPNWTSRSDHSS 221
Query: 215 ATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRN--LTLQCLTEVGALNFGDFYNV 272
+H+ + L + Y N L L NV
Sbjct: 222 NIKLRIHS--------------IQAELRRLLKSKPYENCLLVL------------L--NV 253
Query: 273 QYVNMYNVFMVQLQTILPPTT---NIPEAYAHGNSEEQAFIQNLALFFTS------FFKF 323
Q +N F + + +L TT + + + + + + ++ T K+
Sbjct: 254 QNAKAWNAFNLSCKILL--TTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 324 -HIRVLESTQE--NISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLEN 380
R + +E + + + I+ E + L W+++ D +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSI-----IA-----ESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 381 PAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRM-AK-PEEVL--- 435
++ L P+ R+++ L + A P +L
Sbjct: 361 SSLNV--------LEPAEY----------RKMF-------DRLSVFPPSAHIPTILLSLI 395
Query: 436 ---IVEDENGNIVRETMKDNDVLVQYKIMRETL--IYLSHLDHEDTEKQMLKKL------ 484
+++ + +V + K + V Q K ++ IYL + E + + +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 485 SKQLSGEDWTWNNL-NTLCWAIGS-ISGSMMEEQENRFLVMVIRDL-LNLCEMTKGKDNK 541
K +D L IG + E+ F R + L+
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-----RMVFLDF---------- 500
Query: 542 AVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK- 600
RFL K+ H A + L +Q+ K
Sbjct: 501 ---------------RFLEQ----------KI------RHDSTAWNASGSILNTLQQLKF 529
Query: 601 -RKFVIVQVGENEPFVSELLSGLATTVADLEPH----------QIHTFYESVGHMIQAES 649
+ ++ +N+P L++ + + +E + +I E +A
Sbjct: 530 YKPYIC----DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 650 DVQK 653
VQ+
Sbjct: 586 QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 6e-05
Identities = 72/513 (14%), Positives = 149/513 (29%), Gaps = 157/513 (30%)
Query: 4 EKLRDLS---QPMDVALLDATVAAFYGTGSKEERTAADQILRDL---QNNPDMWLQVVHI 57
E L+ L P + D + S + LR L + + L +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE------LRRLLKSKPYENCLL----V 249
Query: 58 LQNSKNLNT-KFFALQ-----------VLEGVIKYRWNALPVEQ-RDGM-KNYISEVIVQ 103
L N +N F L V + + + ++ + + + ++++
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 104 -LSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAIL 162
L E L N + ++ + A W ++ V K + I E+ L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTII-ESS---L 363
Query: 163 KLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHA 222
+L E ++ + L V S + LS +
Sbjct: 364 NVLEPA---------------EYRKMFDR---------LSVFPPS--AHIPTILLSLI-- 395
Query: 223 FLSWIPLGYIFESPLLETLLKF------FPMPSYRNLTLQCLTEVGALNFGDFYNVQYVN 276
W + ++ L K+ + ++ +V N + V+
Sbjct: 396 ---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVD 451
Query: 277 MYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENIS 336
Y NIP+ + + ++ +F S H
Sbjct: 452 HY---------------NIPKTF-DSDDLIPPYLDQ---YFYSHIGHH------------ 480
Query: 337 ALLMGLEYLINISYVDETEVF-KVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLL 395
L NI + + +F V LD+ F+ + + + N G
Sbjct: 481 --------LKNIEHPERMTLFRMVFLDF--RFL------EQKIRHDSTAWNASG------ 518
Query: 396 PSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLI-----VEDENGNIVRETMK 450
S+++ LQ+ + Y + + K E ++ + N++
Sbjct: 519 -SILN-----TLQQLKFY-------KPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 451 DNDVLVQYKIMRET-LIYLSHLDHEDTEKQMLK 482
D L++ +M E I+ E+ KQ+ +
Sbjct: 566 D---LLRIALMAEDEAIF------EEAHKQVQR 589
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 100/699 (14%), Positives = 224/699 (32%), Gaps = 155/699 (22%)
Query: 32 EERTAADQILRDLQNNPDMWLQVVHILQN--SKNLNTKFFALQVLEGVIKYRWNALPVEQ 89
+ Q L L PD ++ +L S++ T+ + +L+ +K + P
Sbjct: 28 TIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 87
Query: 90 RDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAK 149
D +K+ I L + I++ I W PDL
Sbjct: 88 TDFIKSECLNNIGD---------SSPLIRATVGILITTIASKGELQNW----PDL----- 129
Query: 150 TSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQR 209
+ +L L+SE E L
Sbjct: 130 --------------------------------LPKLCSLLDSEDYNTCEGAFGALQK--- 154
Query: 210 TDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFF--PMPSYRNLTLQCLTEVGALNFG 267
+ + L + + PL + + L+FF P R+ + C+ +
Sbjct: 155 --ICEDSAEILDSDVLDRPLNIM-----IPKFLQFFKHSSPKIRSHAVACVNQF------ 201
Query: 268 DFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRV 327
++ M+ + + + A + + L + +
Sbjct: 202 ------IISRTQALMLHIDSFIE--NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 328 LESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANM 387
+ + +EY++ + + V ++W + E P +
Sbjct: 254 MHNI----------VEYMLQRTQDQDENVALEACEFWLTLA----------EQPICKDVL 293
Query: 388 MGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRE 447
+ L KL +++ M + +I+ +
Sbjct: 294 VRH--------------------------LPKLIPVLVNGMKYSDIDIILLKGDVEGGSG 327
Query: 448 TMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGS 507
K L L+++ ++ +L L + L +W + +G+
Sbjct: 328 GDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEW--VVKESGILVLGA 385
Query: 508 ISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR--AHWKF 565
I+ M+ +L +I L+ D KA++ S + + +Y ++ +
Sbjct: 386 IAEGCMQGMIP-YLPELIPHLIQCL-----SDKKALVRSITCWTLSRYAHWVVSQPPDTY 439
Query: 566 LKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATT 625
LK ++ +L + + +++ VQ+ AC F + ++ + V P+++ +L L
Sbjct: 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV--------PYLAYILDTLVFA 491
Query: 626 VADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKD 685
+ + + Y+++G + + + EY+Q LM QKW+
Sbjct: 492 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN-------------ML 538
Query: 686 QDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNV 724
+D + + +L+ +SVA+AL + FL ++ +N+
Sbjct: 539 KDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNL 577
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 3e-09
Identities = 71/507 (14%), Positives = 149/507 (29%), Gaps = 36/507 (7%)
Query: 422 MLMICRMAKPEEVLIVEDENGNIVRETMK-DNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480
L A +V + + R+ ++D L + + +
Sbjct: 311 PLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPV 370
Query: 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDN 540
L+ + + ++ ++W N A GSI + Q ++ + +LNL D
Sbjct: 371 LEFVEQNITADNW--RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM-----NDQ 423
Query: 541 KAVIASNIMYVVGQYPRFLR---AHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597
+ + +G+ + + L VV + + HP V T + +V+
Sbjct: 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVE 482
Query: 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEY 657
+ V L+ A D E + + + ++ M++ +D E
Sbjct: 483 QLAEATPSPIYNFYPALVDGLIG--AANRIDNEFNARASAFSALTTMVEYATD--TVAET 538
Query: 658 LQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717
+ K + ++ + Q + NIL +V + ++
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598
Query: 718 FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG 777
L+ S+ + L S+ + K +ETF +
Sbjct: 599 MGLFFR-------LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLL---KAL 648
Query: 778 KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKF 837
Q + V A I N + + + Q + E P
Sbjct: 649 NQVDSPVSITAV-GFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARRELKPA----V 702
Query: 838 FSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNF---- 893
S+ IA++ I + + L + + + + + +L +L +
Sbjct: 703 LSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIV 762
Query: 894 QASEFCNQFYRTYFVTIEQEIFAVLTD 920
+ Y TI Q I V D
Sbjct: 763 AGLHDKPEALFPYVGTIFQFIAQVAED 789
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 6e-05
Identities = 44/314 (14%), Positives = 98/314 (31%), Gaps = 20/314 (6%)
Query: 432 EEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGE 491
+ L+ ++ D+D K L+ L+ +D +L + + +
Sbjct: 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378
Query: 492 DWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYV 551
DW + A G I Q ++ + L+ L + D V+ +
Sbjct: 379 DW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-----DPSVVVRDTAAWT 431
Query: 552 VGQYPRFLR---AHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQV 608
VG+ L + +L ++ L E + P V C F + + +
Sbjct: 432 VGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADD 490
Query: 609 GEN------EPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKR-EEYLQRL 661
E ++ L T + HQ + + +++ + K +Q+
Sbjct: 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT 550
Query: 662 MLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDM 721
L+ ++ +++ + T +V + QIS + M
Sbjct: 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV--M 608
Query: 722 LNVYKMYSELISSS 735
++ +M+ S
Sbjct: 609 ASLLRMFQSTAGSG 622
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1061 | |||
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 100.0 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 100.0 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 100.0 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 100.0 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 100.0 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 100.0 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 100.0 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.97 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.89 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.47 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.34 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.32 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.19 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.77 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.74 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.6 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.67 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.61 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.61 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.59 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.56 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.54 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.5 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 97.35 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.2 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.15 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.12 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.02 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 96.92 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 96.83 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 96.67 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 96.66 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 96.62 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 96.6 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 96.6 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 96.42 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 95.78 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 95.36 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 95.26 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 95.17 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 95.13 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 94.98 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 94.9 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 94.81 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 94.8 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 94.8 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 94.27 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 93.61 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 93.32 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 92.95 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 92.73 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 92.43 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 91.95 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 90.92 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 90.09 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 88.51 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 86.17 | |
| 1w9c_A | 321 | CRM1 protein, exportin 1; nuclear protein, nuclear | 84.9 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.91 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 81.87 |
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-167 Score=1566.31 Aligned_cols=1038 Identities=51% Similarity=0.894 Sum_probs=952.7
Q ss_pred hHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhccc
Q 036770 3 AEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRW 82 (1061)
Q Consensus 3 ~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w 82 (1061)
|+.||||++++|++.+++++.++|+| ++++|++|+++|++||++|++|..|..+|..++++++||||+++|+++|+++|
T Consensus 15 ~~~~ld~~~~~Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 15 ARQLLDFSQKLDINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp CCCCCSSSCCCSHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHhhCcCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999999999999999 56699999999999999999999999999888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHH
Q 036770 83 NALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAIL 162 (1061)
Q Consensus 83 ~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL 162 (1061)
+.+|++++..||+++++++.+.+++++..+.++.+++|+|+++|.|++++||+.||+|++++++.+++++..++++|++|
T Consensus 94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL 173 (1073)
T 3gjx_A 94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVIL 173 (1073)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999876665434445677899999999999999999999999999999988888999999999
Q ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHH-
Q 036770 163 KLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL- 241 (1061)
Q Consensus 163 ~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l- 241 (1061)
+.|+|||+++++.++++.|++++++.|+..++.|+++|..+|++..+++++..+|+|+++|++|+|+++++++++++++
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~ 253 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLI 253 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHH
Confidence 9999999987667788999999999999999999999999999888899999999999999999999999999999988
Q ss_pred HhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHH
Q 036770 242 LKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFF 321 (1061)
Q Consensus 242 ~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~ 321 (1061)
+.+|+++++|++|++||++|++++.+ .|++.+..+|..++..+..++|...++.++|...+++|++|++++|+++++++
T Consensus 254 ~~~L~~~~~r~aA~dcL~eIv~k~~~-~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~ 332 (1073)
T 3gjx_A 254 YKFLNVPMFRNVSLKCLTEIAGVSVS-QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFL 332 (1073)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSCSG-GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 69999999999999999999998643 57888999999999999999999889999998778889999999999999999
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhh
Q 036770 322 KFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDG 401 (1061)
Q Consensus 322 ~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~ 401 (1061)
++|..++++.|+..+.+..++++|+.|+.++|.|++++||+||+.+.+++|++.... . + ..|+++ .+.+.+
T Consensus 333 e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~-~-~-~~~~~~------~~~~~~ 403 (1073)
T 3gjx_A 333 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS-T-S-ASPLLS------GSQHFD 403 (1073)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSC-C-C-CSSCTT------SSCCSC
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccc-c-c-cccccc------cccccc
Confidence 999999998776677788899999999999999999999999999999999875210 0 0 012110 011234
Q ss_pred hhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHH
Q 036770 402 IGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQML 481 (1061)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~ 481 (1061)
| +.++..|++++++|+.++++||+||+|+++.|+|+||.+|++++|++++.+|+.||++|.++++++++++..+|+
T Consensus 404 ~----~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~ 479 (1073)
T 3gjx_A 404 I----PPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMT 479 (1073)
T ss_dssp S----CHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred c----hhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4 678899999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH
Q 036770 482 KKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA 561 (1061)
Q Consensus 482 ~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~ 561 (1061)
++|.++++++.|+|+.+|++|||+|+|||++.++.|+++++++|+.|+++|++++|+++|+++++++||++|||++|++.
T Consensus 480 ~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~ 559 (1073)
T 3gjx_A 480 KKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA 559 (1073)
T ss_dssp HHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh
Confidence 99998887778999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHH
Q 036770 562 HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESV 641 (1061)
Q Consensus 562 ~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eai 641 (1061)
||+||++++++|++||++++++|++|||+||.+||++|+++|+.+++|+..||+++|++.+..+...+++++...+|||+
T Consensus 560 h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav 639 (1073)
T 3gjx_A 560 HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAV 639 (1073)
T ss_dssp CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHH
Q 036770 642 GHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDM 721 (1061)
Q Consensus 642 g~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~l 721 (1061)
|++++++|++..+..+++.||.|+++.|++++++++++++.+.|++.++++.++++|+.++|+++|++|.|+++.+|+++
T Consensus 640 ~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~ 719 (1073)
T 3gjx_A 640 GYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDM 719 (1073)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHH
Confidence 99999999988788999999999999999999988888888899998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhh---------------hcCCCCcch
Q 036770 722 LNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG---------------KQNVPDARE 786 (1061)
Q Consensus 722 l~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~---------------~~~~~~~r~ 786 (1061)
+++|+.+++.|...++..|..+.+++.+|.+|++|++|++++++|+++.++.+.+. +.+.|.+|+
T Consensus 720 l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~ 799 (1073)
T 3gjx_A 720 LNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAARE 799 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999999999887754332 238899999
Q ss_pred HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHH
Q 036770 787 SEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDS 866 (1061)
Q Consensus 787 ~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~ 866 (1061)
|+||++++++|+++|..+.+.++.|++.+|+||++||++|+++|||||.+||+|+++++++||..|+++|+++|+.+++|
T Consensus 800 ~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~ 879 (1073)
T 3gjx_A 800 PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDS 879 (1073)
T ss_dssp THHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCC
Q 036770 867 IIWAFRHTERNIAETGLNLLLEMLKNFQA-SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945 (1061)
Q Consensus 867 i~~~~~~~~~~i~~~~l~~l~~l~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~ 945 (1061)
++||++|++|+++++||+++.++++++.+ ++++++||++||..++.++|.|+||+.|++||+.|+.+|++|+.+++.|+
T Consensus 880 i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~ 959 (1073)
T 3gjx_A 880 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGK 959 (1073)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999875 46899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhcccCCChh
Q 036770 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKD 1025 (1061)
Q Consensus 946 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~~~~~~ 1025 (1061)
|..|++... + ..|++++++|+.++|.++||+++++|+..|++++|+.++|..+||+++|||++++|||+|+|++|
T Consensus 960 i~~~l~~~~-~----~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~~~~d~~~f~~~lrDFli~~ke~~~~~~~~ 1034 (1073)
T 3gjx_A 960 ISTPLNPGN-P----VNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSD 1034 (1073)
T ss_dssp CSCSSSCTT-T----TCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTSCCTTTCCT
T ss_pred ccccccccC-C----CccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 999998421 1 25899999999999999999999999999999999999999999999999999999999988889
Q ss_pred hhHHHHHHH----HHHHHHhhccCCCcCCCCCCChhhhc
Q 036770 1026 LYAEEAAAQ----RERERQRMLSIPGLIAPNEIQDEMVD 1060 (1061)
Q Consensus 1026 l~~~e~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~ 1060 (1061)
||+||||++ ++++|+++.+||||++|+|++|||.|
T Consensus 1035 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 1073 (1073)
T 3gjx_A 1035 LFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1073 (1073)
T ss_dssp TCTTHHHHHHHHHHHHHHHHSCC----------------
T ss_pred HhHHHHHHHHHHHHHHHHhHHhcCCCCCCccccChhhcC
Confidence 999999999 66777888999999999999998865
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-153 Score=1451.76 Aligned_cols=998 Identities=43% Similarity=0.792 Sum_probs=938.9
Q ss_pred chHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcc
Q 036770 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYR 81 (1061)
Q Consensus 2 ~~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~ 81 (1061)
.||.||||++|+|++.+++||.++|+|+++ .|++|+++|++||++|++|..|..+|..+.++++||||+++|+++|+++
T Consensus 2 ~~~~~l~~~~~~dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~ 80 (1023)
T 4hat_C 2 AMEGILDFSNDLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRK 80 (1023)
T ss_dssp GGGGGGCTTSCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhHhhCCCCCCCHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 599999999999999999999999999765 9999999999999999999999999988889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHH
Q 036770 82 WNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAI 161 (1061)
Q Consensus 82 w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~i 161 (1061)
|+.+|++++..||+++++++.+.+++++.++.+++++||+|.+++.|++++||+.||++++++++.+++++..++++|.+
T Consensus 81 W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~i 160 (1023)
T 4hat_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIV 160 (1023)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999998767666777899999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHH
Q 036770 162 LKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241 (1061)
Q Consensus 162 L~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l 241 (1061)
|+.|+|||++++++++++.|++.++++|+..++.|+++|.++|+.+.+++++..+|+|+++|++|+|++.++++++++.+
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l 240 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHH
Confidence 99999999998778899999999999999999999999999999888889999999999999999999999999999999
Q ss_pred H-hhCCCccchHHHHHHHHHHhcCcC-Cc--chHHHHHHHHHHHHHHH-HhhCCCCCChhhhhcCCCcchHHHHHHHHHH
Q 036770 242 L-KFFPMPSYRNLTLQCLTEVGALNF-GD--FYNVQYVNMYNVFMVQL-QTILPPTTNIPEAYAHGNSEEQAFIQNLALF 316 (1061)
Q Consensus 242 ~-~~L~~~~~~~~a~~cL~ei~~~~~-~~--~~~~~~~~~f~~~l~~l-~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l 316 (1061)
+ .+|++|++|++|++||++|+++++ ++ .+++.+..+|..++..+ ..++|...++.+.|...+++|+++++++|++
T Consensus 241 ~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l 320 (1023)
T 4hat_C 241 STKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMF 320 (1023)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHH
Confidence 9 999999999999999999999765 33 36778889999999988 7899999999999987777899999999999
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCc
Q 036770 317 FTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLP 396 (1061)
Q Consensus 317 ~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 396 (1061)
++++|++|..++++.+++.+.+..++++|+.++.++|.|++++|++||+.+++++|.+
T Consensus 321 ~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e---------------------- 378 (1023)
T 4hat_C 321 LTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE---------------------- 378 (1023)
T ss_dssp HHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS----------------------
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 9999999999998877667888788999999999999999999999999999987631
Q ss_pred hhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhH
Q 036770 397 SVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDT 476 (1061)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~ 476 (1061)
+.++..|+|++.+|+.++++||+||+|+.++++|+|+.+|++.+|.++...|+.+|++|.+++++++.++
T Consensus 379 ----------~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~ 448 (1023)
T 4hat_C 379 ----------PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT 448 (1023)
T ss_dssp ----------TTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHH
Confidence 1245679999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccch
Q 036770 477 EKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYP 556 (1061)
Q Consensus 477 ~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~ 556 (1061)
++++.+++.+++++++++|+.+||+|||+|+|+|++.++.++++++++++.|+++|++++|+++++++++++||++|||+
T Consensus 449 ~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 449 EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp HHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 99999999988877678999999999999999999998888999999999999999998899999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHH
Q 036770 557 RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHT 636 (1061)
Q Consensus 557 ~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~ 636 (1061)
+|++.||++|++++++|+++|++++|+|+++||++|.+||++|+.+++..++++..||+++|++.+..+...++.+++..
T Consensus 529 ~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999877889999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH
Q 036770 637 FYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV 716 (1061)
Q Consensus 637 l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~ 716 (1061)
+|||+|.+|+++|+.+.+.++++.||.|+++.|++++++++++|..+.|++.++++.++++|++++|+++|++|.|+++.
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~ 688 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGH 688 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 99999999999999888899999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhh---------------hcCC
Q 036770 717 IFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG---------------KQNV 781 (1061)
Q Consensus 717 i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~---------------~~~~ 781 (1061)
+|++++++|+.+++.|+..++..|..+.++|.+|.+|++|++|++++++|+.+.++.+.+. ..+.
T Consensus 689 i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~ 768 (1023)
T 4hat_C 689 IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999987754332 2388
Q ss_pred CCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHH
Q 036770 782 PDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLK 861 (1061)
Q Consensus 782 ~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 861 (1061)
|+.|+|+||++++++|+++|+.+.+.++.|++.+|+||++||++|+++|||||.+||+|+++++++||..++++|+++++
T Consensus 769 ~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~ 848 (1023)
T 4hat_C 769 PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFK 848 (1023)
T ss_dssp GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHH
Q 036770 862 LVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA---SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLF 938 (1061)
Q Consensus 862 ~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~ 938 (1061)
.+++|++||++|+||+++++|++++.++++++.+ .+++++||++||..++.++|.|+||+.|++||+.|+.+|++|+
T Consensus 849 ~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~ 928 (1023)
T 4hat_C 849 LFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928 (1023)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999874 4689999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhc
Q 036770 939 CLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEF 1018 (1061)
Q Consensus 939 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~ 1018 (1061)
.+++.|+|++|+++..+.| .|..|.+++++|+.++|.++|||++++|+..|++++++.++|..+||+++|||++++|||
T Consensus 929 ~~~~~~~~~~~~~~~~~~~-~~~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~~~~~~~~f~~~lrdfli~~ke~ 1007 (1023)
T 4hat_C 929 SLVYDNKISVPLYQEAEVP-QGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCKDLVVFKGTLRDFLVQIKEV 1007 (1023)
T ss_dssp HHHHTTCCCSCSSCTTSSC-TTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSS
T ss_pred HHHHcCCcccccCCccccC-CCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhHhh
Confidence 9999999999999988777 577999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCh-hhhHHHHHHH
Q 036770 1019 SAQDNK-DLYAEEAAAQ 1034 (1061)
Q Consensus 1019 ~~~~~~-~l~~~e~~~~ 1034 (1061)
+| |++ |||+||||++
T Consensus 1008 ~~-~~~~~~~~~~~~~~ 1023 (1023)
T 4hat_C 1008 GG-DPTDYLFAEDKENA 1023 (1023)
T ss_dssp SC-CGGGGGCC------
T ss_pred cC-CChHHHhHHhhhcC
Confidence 99 888 6999999864
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-121 Score=1192.97 Aligned_cols=1020 Identities=43% Similarity=0.785 Sum_probs=902.2
Q ss_pred chHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcc
Q 036770 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYR 81 (1061)
Q Consensus 2 ~~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~ 81 (1061)
.|+.||||+.|+|+++++++++.+|+|+ ++.|++|+++|++|+++|++|..|..+|.++.++++|+||+++|+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 2 AMEGILDFSNDLDIALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRK 80 (1049)
T ss_dssp GGGGGGCTTSCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred hhhHhcCCCCcccHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh
Confidence 4999999999999999999999999985 458999999999999999999999999988889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHH
Q 036770 82 WNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAI 161 (1061)
Q Consensus 82 w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~i 161 (1061)
|..+|+++|..||+++++++.+..++++.++.++.+++|++.+++.|++++||+.||++++++++.+++++..+++++.+
T Consensus 81 W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIV 160 (1049)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHH
Confidence 99999999999999999999987655544444579999999999999999999999999999999998777789999999
Q ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHH
Q 036770 162 LKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241 (1061)
Q Consensus 162 L~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l 241 (1061)
|+.|+||+.++++++++..|++++++.++.+++.|+.++.++++...+++++..+|+|+.+|++|+|++.++++++++.+
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l 240 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHH
Confidence 99999999987667788899999999999999999999999999877788999999999999999999999999999999
Q ss_pred H-hhCCCccchHHHHHHHHHHhcCcCCcc---hHHHHHHHHHHHHHHHHh-hCCCCCChhhhhcCCCcchHHHHHHHHHH
Q 036770 242 L-KFFPMPSYRNLTLQCLTEVGALNFGDF---YNVQYVNMYNVFMVQLQT-ILPPTTNIPEAYAHGNSEEQAFIQNLALF 316 (1061)
Q Consensus 242 ~-~~L~~~~~~~~a~~cL~ei~~~~~~~~---~~~~~~~~f~~~l~~l~~-~l~~~~~l~~~~~~~~~~d~~~~~~l~~l 316 (1061)
+ .++.+++++..|++||++|+++++++. +.+++..+|..++..+.. ++|...++...|....++|.++++++|++
T Consensus 241 ~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~ 320 (1049)
T 3m1i_C 241 STKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMF 320 (1049)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHH
Confidence 9 677899999999999999999876543 456777888888888877 88887778777875667788999999999
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCc
Q 036770 317 FTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLP 396 (1061)
Q Consensus 317 ~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 396 (1061)
++++++.+..++++++...+.+...+++++.++.++|++++..|++||+.+++++++ .
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~-~--------------------- 378 (1049)
T 3m1i_C 321 LTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY-E--------------------- 378 (1049)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-S---------------------
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh-c---------------------
Confidence 999999999988875545566667889999999999999999999999999987643 0
Q ss_pred hhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhH
Q 036770 397 SVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDT 476 (1061)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~ 476 (1061)
+..+..|++++.+|+.+++.+|.||+|..+.++|++|.||++++|.|++..|+.++++|.+++++.+.++
T Consensus 379 ----------~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~ 448 (1049)
T 3m1i_C 379 ----------PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT 448 (1049)
T ss_dssp ----------TTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHH
Confidence 1123457899999999999999999887656677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccch
Q 036770 477 EKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYP 556 (1061)
Q Consensus 477 ~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~ 556 (1061)
...+.+.+.+.++++.++|+.+|++||++|+|++.+.+..++.+++++++.|+++|+...+++++++++++++|++|||+
T Consensus 449 l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~ 528 (1049)
T 3m1i_C 449 EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYP 528 (1049)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence 99999999888766678999999999999999999887767788999999999999876555688999988999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHH
Q 036770 557 RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHT 636 (1061)
Q Consensus 557 ~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~ 636 (1061)
+|+..||++|++++++++++|++++++|+.+||++|.+||++|+.++...++++..||+++|++.+..+...++.++...
T Consensus 529 ~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999899999999999999999999998766778888999999999999988899999999
Q ss_pred HHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH
Q 036770 637 FYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV 716 (1061)
Q Consensus 637 l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~ 716 (1061)
+|||+|.++++.++.+.+..++..+|.|+.+.|++++++..++++...|++..+.+.++++|++++|+++|++|.|++..
T Consensus 609 ~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~ 688 (1049)
T 3m1i_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGH 688 (1049)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999997677789999999999999999998776666555677777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhh------------hhh---cCC
Q 036770 717 IFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQ------------IGK---QNV 781 (1061)
Q Consensus 717 i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~------------l~~---~~~ 781 (1061)
+|++++.+|+.++..+...+...|..+.+.|..+.++.+++.++++++.|++....++. +.. ...
T Consensus 689 i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~ 768 (1049)
T 3m1i_C 689 IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998888877777877788999999999999999999999987753221 111 134
Q ss_pred CCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHH
Q 036770 782 PDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLK 861 (1061)
Q Consensus 782 ~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 861 (1061)
+..|++.+|+++++++.++|..+.++++.++..+++++++|++++++++||+|++||+|+++++++||..++.+++..+.
T Consensus 769 ~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 848 (1049)
T 3m1i_C 769 PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFK 848 (1049)
T ss_dssp GGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHH
Confidence 55677899999999999999988899999999999999999999999999999999999999999999999988888899
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHH
Q 036770 862 LVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA---SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLF 938 (1061)
Q Consensus 862 ~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~ 938 (1061)
.++++++||++|+++++.++|++++.+++++++. .+.++.||++||..++..+|.++||+.|+++|+.|+.+|++++
T Consensus 849 ~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~ 928 (1049)
T 3m1i_C 849 LFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928 (1049)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864 3678999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhc
Q 036770 939 CLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEF 1018 (1061)
Q Consensus 939 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~ 1018 (1061)
.+++.|+|+.|+|+++++| .+..|+.++.+||.++|.+.||+++++|+..|++++++.++|..+||+++||||+++|||
T Consensus 929 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~f~~~~rdf~~~~~~~ 1007 (1049)
T 3m1i_C 929 SLVYDNKISVPLYQEAEVP-QGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGTLRDFLVQIKEV 1007 (1049)
T ss_dssp HHHHTTCCCSCSSCGGGSS-TTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTSS
T ss_pred HHHhcCcccccccCccccC-CCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHhhhhh
Confidence 9999999999999987655 345788999999999998899999999999999999999999999999999999999999
Q ss_pred ccCCChh-hhHHHHHHH----HHHHHHhhccCCCcCCCCCCCh
Q 036770 1019 SAQDNKD-LYAEEAAAQ----RERERQRMLSIPGLIAPNEIQD 1056 (1061)
Q Consensus 1019 ~~~~~~~-l~~~e~~~~----~~~~~~~~~~~~g~~~~~~~~~ 1056 (1061)
+| ||+| ||+||||++ ++++|++..+||||++|+|++|
T Consensus 1008 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1049)
T 3m1i_C 1008 GG-DPTDYLFAEDKENALMEQNRLEREKAAKIGGLLKPSELDD 1049 (1049)
T ss_dssp SC-CGGGGGGGGGTTTC--------------------------
T ss_pred cC-CchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 99 9998 999999877 3457888899999999999875
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-84 Score=819.34 Aligned_cols=897 Identities=15% Similarity=0.205 Sum_probs=656.7
Q ss_pred CCCCHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcccHHHHHHHHccCC--ChHHHHHHHHHHHHHHhcccCCCCH
Q 036770 11 QPMDVALLDATVAAFYGTG-SKEERTAADQILRDLQNNPDMWLQVVHILQNSK--NLNTKFFALQVLEGVIKYRWNALPV 87 (1061)
Q Consensus 11 ~~~di~~l~~av~~ly~~~-~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~--~~~~rffaa~~L~~~I~~~w~~l~~ 87 (1061)
.|+|++++.+|++..|+|+ |++.|++|++||++||++|++|..|..+|.++. ++++||||+++|+++|+ .+|+
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~ 76 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNN 76 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCT
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCCh
Confidence 3789999999998888876 899999999999999999999999999998764 79999999999999999 6999
Q ss_pred H----HHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-h-hHHHHHHHH
Q 036770 88 E----QRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-E-TICENCMAI 161 (1061)
Q Consensus 88 e----~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~-~~~~~~L~i 161 (1061)
+ ++..||+++++++.+.+. ...+++|+||+|.+++.+++++||+.||+|++++++.++++ . ......|++
T Consensus 77 e~~~~~~~~lr~~ll~~l~~~~~----~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~Lri 152 (980)
T 3ibv_A 77 ESNLLELQMIRDSVWSYIKELSF----LDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKV 152 (980)
T ss_dssp TTSHHHHHHHHHHHHHHHHHCCS----TTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHH
Confidence 9 999999999999988421 12357899999999999999999999999999999998764 3 356677888
Q ss_pred HHHHHHHHhccC--cccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcccccCcchhcch
Q 036770 162 LKLLSEEVFDFS--RGEMTQQKIKELKQSLNSE-FQLIHELCLYVLSAS---QRTDLIRATLSTLHAFLSWIPLGYIFES 235 (1061)
Q Consensus 162 L~~l~EEv~~~~--~~~l~~~r~~~l~~~l~~~-~~~I~~~~~~~L~~~---~~~~l~~~~L~~l~~~l~wi~~~~i~~~ 235 (1061)
|..|+||+++.. +......|++++++.|+.+ ++.|++.|..+|.+. .+++++..+|+|+++|++|+|++.++++
T Consensus 153 L~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~ 232 (980)
T 3ibv_A 153 LLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNE 232 (980)
T ss_dssp HHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCH
T ss_pred HHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcc
Confidence 888889998842 3445568899999999965 899999998888762 5678999999999999999999999999
Q ss_pred hhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCC--CcchHHHHHHH
Q 036770 236 PLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHG--NSEEQAFIQNL 313 (1061)
Q Consensus 236 ~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~--~~~d~~~~~~l 313 (1061)
++++.++++|.++++|++|++||++|+++++.+.....+... +. + .+.+... .++|.++++++
T Consensus 233 ~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~----l~-L----------~~~~~~l~~~~~D~d~~~~l 297 (980)
T 3ibv_A 233 PCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNI----LN-L----------NLFFSKSQEQSTDPNFDEHV 297 (980)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH----HH-H----------HHHHCC-----CCHHHHHHH
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHH----Hh-H----------HHHHHHHhcccccHHHHHHH
Confidence 999999999999999999999999999987754211112221 11 1 2222221 15788899999
Q ss_pred HHHHHHHHHHHHHHhccch---------hhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036770 314 ALFFTSFFKFHIRVLESTQ---------ENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVT 384 (1061)
Q Consensus 314 ~~l~~~~~~~~~~ile~~~---------~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~ 384 (1061)
|++++++|+.++.. ++.+ ...+.+...+++++.++.+++++++..+++||+.+++.+-+....
T Consensus 298 a~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~------- 369 (980)
T 3ibv_A 298 AKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSS------- 369 (980)
T ss_dssp HHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccc-------
Confidence 99999999998777 6543 112444567899999999999999999999999998764321100
Q ss_pred cccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCcccccccc----CCchhHHhhhcchhhHHHHHH
Q 036770 385 ANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVED----ENGNIVRETMKDNDVLVQYKI 460 (1061)
Q Consensus 385 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~----d~~e~~~e~~~d~~~~~ly~~ 460 (1061)
......+++++.+|+.++++||+||++.. |++ |+.+.|++||++..
T Consensus 370 ----------------------~~~~~~~~~~l~~Ll~~li~k~~yp~d~~-~~~~~d~ed~~~F~e~Rk~l~------- 419 (980)
T 3ibv_A 370 ----------------------KELSASLKEFLKSLLEAIIKKMKYDESQE-WDDDPDSEEEAEFQEMRKKLK------- 419 (980)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCSSSSTHHHHHHHHHHHH-------
T ss_pred ----------------------ccccHHHHHHHHHHHHHHHHHccCCCccc-cccccchhHHHHHHHHHHHHH-------
Confidence 00123468999999999999999998754 433 45567888887654
Q ss_pred HHHHHHHHhcCCHHhHHH----HHHHHHHhhcc-CCccccchhhHHHHHHHhhhCCCChhH-----HhHHHHHHHHHHHH
Q 036770 461 MRETLIYLSHLDHEDTEK----QMLKKLSKQLS-GEDWTWNNLNTLCWAIGSISGSMMEEQ-----ENRFLVMVIRDLLN 530 (1061)
Q Consensus 461 ~~~~L~~l~~l~~~~~~~----~i~~~L~~~~~-~~~~~w~~le~~~~algsis~~~~~~~-----e~~~l~~vi~~Ll~ 530 (1061)
..+..++.++++.+.. .+...+.+.+. +.+.+|+.+|+++|++|++++++.... ++..++++++.+..
T Consensus 420 --~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ 497 (980)
T 3ibv_A 420 --IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL 497 (980)
T ss_dssp --HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH
T ss_pred --HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Confidence 2233445556776666 44444433332 234689999999999999999876421 23456677776666
Q ss_pred hhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHH--hhhcCChhHHHHHHHHHHHHHHHhhhccccccc
Q 036770 531 LCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFE--FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQV 608 (1061)
Q Consensus 531 l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~--~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~ 608 (1061)
+..+....++++.++...++++|||++|+..||++|+++++.++. ++++++++|+.+||++|.++|+.|+.++.+
T Consensus 498 ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~--- 574 (980)
T 3ibv_A 498 VTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN--- 574 (980)
T ss_dssp HHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS---
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh---
Confidence 655433334566777778999999999999999999999999999 999988999999999999999999999875
Q ss_pred CCCchHHHHHHHhHHHhhhc--C-------------------CcchHHHHHHHHhhhhccCCC-HHHHHHHHHHHhhchH
Q 036770 609 GENEPFVSELLSGLATTVAD--L-------------------EPHQIHTFYESVGHMIQAESD-VQKREEYLQRLMLLPN 666 (1061)
Q Consensus 609 ~e~~p~l~~il~~l~~~~~~--l-------------------~~~~~~~l~eaig~li~~~~~-~~~~~~~l~~Ll~~~~ 666 (1061)
|++.|++.+..+... . .++++.++|||+|.++++.+. ++.+..+++.++.|+.
T Consensus 575 -----~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~ 649 (980)
T 3ibv_A 575 -----YTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALI 649 (980)
T ss_dssp -----SHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 889999998876431 1 134689999999999998763 5677899999999999
Q ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC-----
Q 036770 667 QKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGP----- 741 (1061)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~----- 741 (1061)
++|++.++...++ .+.. . ++++++.+++++++++...-.. .-| +..+|+...+.+...+...+.
T Consensus 650 ~~l~~~l~~~~~~----~~~~-~-~i~~~i~al~~lakgf~~~~~~----~~p-~~~~f~~~~~~il~~l~~~~~~~~ir 718 (980)
T 3ibv_A 650 GKANAALSSDLSA----LENI-I-SVYCSLMAIGNFAKGFPARGSE----EVA-WLASFNKASDEIFLILDRMGFNEDIR 718 (980)
T ss_dssp HHHHHHHTTSCC------CHH-H-HHHHHHHHHHHHHHTSCSCC-C----CCS-HHHHHHHHHHHHHHHHHHSCCSHHHH
T ss_pred HHHHHHHhhcccC----ccHH-H-HHHHHHHHHHHHhccCCcccCC----CCc-HHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 9999988654322 1322 2 8899999999999988642100 001 333444444444444433322
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHH
Q 036770 742 FASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLE 821 (1061)
Q Consensus 742 ~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~ 821 (1061)
.+....+.|.+++++..+++++..+++.+ +. +.......++|.+++++|++||.++.+.+..++..+++.++.
T Consensus 719 ea~~~~~~r~i~~lg~~~~p~lp~~i~~l-----l~--~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~ 791 (980)
T 3ibv_A 719 GAVRFTSGRIINVVGPDMLPKVPQLISIL-----LN--SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFS 791 (980)
T ss_dssp HHHHHHHHHHTTTTHHHHTTTHHHHHHHH-----HH--HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHhHHHHHHHHHHHH-----Hh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334455677778888888888887755 31 333445689999999999999999888899999999999999
Q ss_pred hhhhc------cCCChHhHHHHHHHHHHHHhhchhHhhcCCh--HHHHHHHHHHH-HHhcCCChhHHHHHHHHHHHHHHh
Q 036770 822 MITKN------FEDYPEHRLKFFSLLRAIATHCFPALIRLSS--QQLKLVMDSII-WAFRHTERNIAETGLNLLLEMLKN 892 (1061)
Q Consensus 822 ~i~~~------~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~--~~~~~~~~~i~-~~~~~~~~~i~~~~l~~l~~l~~~ 892 (1061)
+++.. +++.++++++||.|+..++++....++..++ ..++.++.+++ .|..++++.+.|.|+.++.++++.
T Consensus 792 ~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 792 SLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp HTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99742 3456889999999999999976555554443 47888999988 567779999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHH
Q 036770 893 FQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTI 972 (1061)
Q Consensus 893 ~~~~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 972 (1061)
|+++....+|-+..|. +++.+|+++.++..+....+...++.+++.+++. ++. +.+.+|+. ||.
T Consensus 872 ~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~------~~~--------~~g~~~~~-~l~ 935 (980)
T 3ibv_A 872 WGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKI------ILE--------KLGDIYKS-YLV 935 (980)
T ss_dssp -------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHH------HHH--------HHHHHHHH-HHH
T ss_pred HCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHH------HHH--------hcCHHHHH-HHH
Confidence 9865545556566666 9999999998887776666666788887776653 222 12343332 333
Q ss_pred HHhhccCCC--CCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhh
Q 036770 973 KLLGTSFPN--MTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKE 1017 (1061)
Q Consensus 973 ~~l~~~fp~--~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~ 1017 (1061)
...||+ ++++.+++|+++|.+ .|.|.||+++.+|+.++|.
T Consensus 936 ---~~~lp~~~~~~~~~~~~~~~l~~--~~~k~f~~~~~~~~~~~~~ 977 (980)
T 3ibv_A 936 ---TVYFPTVNFPDVMASEYLQALSN--LDSRSFKQFFQKFIQALKS 977 (980)
T ss_dssp ---HTTTTC----CCHHHHHHHC------------------CHHHHC
T ss_pred ---HhcCCcCCCCHHHHHHHHHHHhc--cchhhHHHHHHHHHHHhhc
Confidence 346775 699999999999954 4899999999999999885
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-81 Score=812.81 Aligned_cols=886 Identities=14% Similarity=0.221 Sum_probs=689.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHH
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDG 92 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~ 92 (1061)
.|++.++++++.+|+++|++.|++|+++|++||++|++|..|..+|..+.++++|+||+++|+++|+++|+.+|++++..
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 68999999999988777899999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC------ChhHHHHHHHHHHHHH
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT------SETICENCMAILKLLS 166 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~------~~~~~~~~L~iL~~l~ 166 (1061)
||+++++++.+..++ ++.|++|++.+++.|++++||+.||++++++++.+++ ++..++.++.+|+.++
T Consensus 101 ir~~ll~~l~~~~~~------~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 101 LKAQLFTQITRFASG------SKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp HHHHHHHHHHHTTTS------CHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence 999999999885422 3789999999999999999999999999999999876 5668999999999999
Q ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-HHHHHHHHHHHhcccccCcchhcchhhHHHHHhhC
Q 036770 167 EEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRT-DLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFF 245 (1061)
Q Consensus 167 EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~-~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L 245 (1061)
||+++... +..||..+++.+...++.|+.++.++++...++ .+...+|+|+.+|+. ++......+++++.+++++
T Consensus 175 ee~~~~~~---~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l 250 (963)
T 2x19_B 175 EEFQTSRL---PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAAL 250 (963)
T ss_dssp HHHTTCCC------------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHT
T ss_pred HHHhcccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHh
Confidence 99977532 667888999999989999999999999775443 588999999999887 5544334488999999999
Q ss_pred CCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 036770 246 PMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHI 325 (1061)
Q Consensus 246 ~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~ 325 (1061)
.++++++.|++|+++++++..++.+.+.+..++..++..... +...+. .+|.++++++|++++.+++.+.
T Consensus 251 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~---~~d~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 251 QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQ-------LRQAVQ---NGDMETSHGICRIAVALGENHS 320 (963)
T ss_dssp TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHH-------HHHHHH---TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHH-------HHHHHH---CCCHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999654433444444444443332111 111221 2455889999999999999988
Q ss_pred HHhccchhhHHHHHHHHHHHHHhhcc-----ChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhh
Q 036770 326 RVLESTQENISALLMGLEYLINISYV-----DETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVD 400 (1061)
Q Consensus 326 ~ile~~~~~~~~~~~~l~~ll~~~~~-----~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 400 (1061)
..+.+.....+.+...+++|+.++.+ .|++++..|++||+.+++.+++. +. +
T Consensus 321 ~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~----~~-------------------~ 377 (963)
T 2x19_B 321 RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSF----EA-------------------E 377 (963)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTS----CH-------------------H
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhh----hh-------------------h
Confidence 76653211123334667899998876 36788999999999999854310 00 0
Q ss_pred hhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccc--cccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHH
Q 036770 401 GIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLI--VEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK 478 (1061)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~--~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~ 478 (1061)
..+.....|++++.+|+.+++.+|.+|++... |++|+++.|+++++ .++++|..++++.+.++..
T Consensus 378 ----~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~---------~~~~~L~~~~~~~~~~~l~ 444 (963)
T 2x19_B 378 ----KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRV---------DISDTLMYVYEMLGAELLS 444 (963)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHH---------HHHHHHHHHHHHHTHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHH---------HHHHHHHHHHHHccHHHHH
Confidence 00234567889999999999999999987531 33344455655543 4567778888777777888
Q ss_pred HHHHHHHhhcc--CCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccch
Q 036770 479 QMLKKLSKQLS--GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYP 556 (1061)
Q Consensus 479 ~i~~~L~~~~~--~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~ 556 (1061)
.+.+.+...++ +...+|+.+|+++|++|+|++.+.++ ++++++++++.+.++++. ++ .++..++|++|+|+
T Consensus 445 ~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~-~~~~l~~l~~~l~~l~~~-----~~-~vr~~~~~~l~~~~ 517 (963)
T 2x19_B 445 NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVN-YSDVVPGLIGLIPRISIS-----NV-QLADTVMFTIGALS 517 (963)
T ss_dssp HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSS-CCSHHHHHHHHGGGSCCC-----SH-HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCch-hhHHHHHHHHHHHhCCCC-----cH-HHHHHHHHHHHHHH
Confidence 88887776652 12358999999999999999987653 467888999977676642 33 36677999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh--cCCcchH
Q 036770 557 RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA--DLEPHQI 634 (1061)
Q Consensus 557 ~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~--~l~~~~~ 634 (1061)
+|+..|++++++++++++.++++ ++|+.+||++|.++|++|+.++.+ |++++++.+..+.. .++.+.+
T Consensus 518 ~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p--------~~~~il~~l~~~l~~~~~~~~~~ 587 (963)
T 2x19_B 518 EWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPP--------YAANIVAVSQDVLMKQIHKTSQC 587 (963)
T ss_dssp HHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTT--------THHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHhccCCCChHHH
Confidence 99999999999999999999975 789999999999999999998874 89999998887765 4678889
Q ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhCh------
Q 036770 635 HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGT------ 708 (1061)
Q Consensus 635 ~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~------ 708 (1061)
..+|||+|.++++.+ .+.+..+++.+|.|+...|+++.++ + .+++....+...++++++++++++.
T Consensus 588 ~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~---~----~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 659 (963)
T 2x19_B 588 MWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEE---I----PNPSNKLAIVHILGLLSNLFTTLDISHHEDD 659 (963)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSS---C----SCHHHHHHHHHHHHHHHHHHHHCCSSCCC--
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 999999999999988 5567789999999999999886421 1 2667777788999999999988763
Q ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHH-------HHHHHH
Q 036770 709 ----------------FFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRET-------LKLIET 765 (1061)
Q Consensus 709 ----------------~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i-------l~ll~~ 765 (1061)
++.+....++|.+..+...+.+ .. .-....++.+++.+ .+++..
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~---~v~e~~~~~l~~~~~~~~~~~~~~l~~ 726 (963)
T 2x19_B 660 HEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLN----------DA---QVVEAVCAIFEKSVKTLLDDFAPMVPQ 726 (963)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHTT----------CH---HHHHHHHHHHHHHHHHSSSTTGGGHHH
T ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccC----------ch---HHHHHHHHHHHHHHHhhcccccccHHH
Confidence 2445556666665554443210 00 00001111111110 111111
Q ss_pred HHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhcc--CCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHH
Q 036770 766 FLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGA--MIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRA 843 (1061)
Q Consensus 766 ~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~--~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~ 843 (1061)
++. .+.. .+...+.++++++++.++..+|.. +.+.++.+++.+++++++++++++.++||++++||.|+.+
T Consensus 727 ~~~------~l~~-~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~ 799 (963)
T 2x19_B 727 LCE------MLGR-MYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQ 799 (963)
T ss_dssp HHH------HHHH-HHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHH
T ss_pred HHH------HHHH-HHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHH
Confidence 111 1111 111124678999999999977653 5667889999999999999999999999999999999999
Q ss_pred HHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 036770 844 IATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFH 923 (1061)
Q Consensus 844 i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~~~ 923 (1061)
++.+||..+++ ++..++.++++++||++++++++.+.|++++.++++.++......+|+..++..++..+|.+++|..|
T Consensus 800 ~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 878 (963)
T 2x19_B 800 ALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQAS 878 (963)
T ss_dssp HHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSC
T ss_pred HHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999875 33349999999999999999999999999999999887655677889999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHh-hccCC--CCCHHHHHHHHHHHhhcCCC
Q 036770 924 KPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLL-GTSFP--NMTAAEVTQFVDGLLESRND 1000 (1061)
Q Consensus 924 ~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~fp--~~~~~q~~~f~~~l~~~~~d 1000 (1061)
++++..++.+|..++. .+.+++.+|+.++| .+.|| ++++++++.|++++++.+.|
T Consensus 879 ~~~~~~~~~il~~l~~----------------------~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~ 936 (963)
T 2x19_B 879 RSLMDCFADILFALNK----------------------HCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVN 936 (963)
T ss_dssp GGGHHHHHHHHHHHHH----------------------HSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCSSCC
T ss_pred hhHHHHHHHHHHHHHH----------------------HChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHcC
Confidence 9999999998865332 23667889999999 47899 89999999999999988779
Q ss_pred hHHHHHHHHHHHhhhhhcccCC
Q 036770 1001 LSTFKNHIRDFLVQSKEFSAQD 1022 (1061)
Q Consensus 1001 ~~~f~~~lrdF~~~~k~~~~~~ 1022 (1061)
.++||+++|||++++|+++|.|
T Consensus 937 ~~~f~~~l~~F~~~~r~~~~~~ 958 (963)
T 2x19_B 937 KRRVKEMVKEFTLLCRGLHGTD 958 (963)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHHHHHHcCccCcc
Confidence 9999999999999999998843
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-74 Score=747.76 Aligned_cols=886 Identities=14% Similarity=0.202 Sum_probs=653.2
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHH
Q 036770 12 PMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRD 91 (1061)
Q Consensus 12 ~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~ 91 (1061)
++|++.++++++.+|+| |++.|++|+++|++||++|++|.+|.++|..+.++++|+||+++|+++|+++|..+|++++.
T Consensus 3 ~~d~~~l~~~l~~~~~~-d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 3 PIDIARLEEAVVSFYRS-NSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp --------CTHHHHHTS-TTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred hhhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHH
Confidence 47899999999999987 56689999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC-------ChhHHHHHHHHHHH
Q 036770 92 GMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT-------SETICENCMAILKL 164 (1061)
Q Consensus 92 ~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~-------~~~~~~~~L~iL~~ 164 (1061)
.||+++++++.+..++ ++.||+|++.+++.|++++|| .||++++++++.+++ ++..++.++.+|+.
T Consensus 82 ~ir~~ll~~l~~~~~~------~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 82 ELKQKILESIVRFAGG------PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 9999999999886532 368999999999999999999 999999999999876 45689999999999
Q ss_pred HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHHHhccc--ccCcchhcch
Q 036770 165 LSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRT-------DLIRATLSTLHAFLS--WIPLGYIFES 235 (1061)
Q Consensus 165 l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~-------~l~~~~L~~l~~~l~--wi~~~~i~~~ 235 (1061)
++||++... +..||..+++.++..++.|++++.++++...++ ++...+|+|+++|+. |+|.+ ..+
T Consensus 155 l~EEi~~~~----~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~ 228 (971)
T 2x1g_F 155 IPEEAQVIH----TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCV 228 (971)
T ss_dssp HHHHHHHCC----CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHH
T ss_pred hHHHHhccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccc
Confidence 999997642 346788899999999999999999999865433 789999999999999 99998 668
Q ss_pred hhHHHHHhhC------------------CCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhh
Q 036770 236 PLLETLLKFF------------------PMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPE 297 (1061)
Q Consensus 236 ~ll~~l~~~L------------------~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~ 297 (1061)
++++.++. | .+|++|+.|++||++++++..+.++.+.+..++...+.....+. .
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~ 300 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEIT-------K 300 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHH-------H
T ss_pred cHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHH-------H
Confidence 89998887 5 56789999999999999964322233334444444333211110 0
Q ss_pred hhcCCCcch---HHHHHHHHHHHHHHHHHHHHHhc----c-chhhHHHHHHHHHHHHHhhcc-----ChhhHHHHHHHHH
Q 036770 298 AYAHGNSEE---QAFIQNLALFFTSFFKFHIRVLE----S-TQENISALLMGLEYLINISYV-----DETEVFKVCLDYW 364 (1061)
Q Consensus 298 ~~~~~~~~d---~~~~~~l~~l~~~~~~~~~~ile----~-~~~~~~~~~~~l~~ll~~~~~-----~d~ei~~~~l~fW 364 (1061)
...++| +++...++++++.+++.+...+. + .++..+.+...++.|+.++.+ .+++++..+++||
T Consensus 301 ---~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw 377 (971)
T 2x1g_F 301 ---TEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFW 377 (971)
T ss_dssp ---HHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHH
T ss_pred ---HHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHH
Confidence 111223 37888999999999999877654 2 111223344667888888765 3789999999999
Q ss_pred HHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccc--cccCCc
Q 036770 365 NSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLI--VEDENG 442 (1061)
Q Consensus 365 ~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~--~~~d~~ 442 (1061)
+.+++...+...+. +. ...+..+++++.+++.+++.||.+|++... |+.+++
T Consensus 378 ~~l~~~~~~~~~~~----------------------~~----~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~ 431 (971)
T 2x1g_F 378 YMLQDEVFAMSNDE----------------------QK----HKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDL 431 (971)
T ss_dssp HHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHH
T ss_pred HHHHHHHHhccccc----------------------ch----HHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHH
Confidence 99987543110000 00 223456789999999999999999976431 222222
Q ss_pred hhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhcc---CCccccchhhHHHHHHHhhhCCCChhHHhH
Q 036770 443 NIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLS---GEDWTWNNLNTLCWAIGSISGSMMEEQENR 519 (1061)
Q Consensus 443 e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~---~~~~~w~~le~~~~algsis~~~~~~~e~~ 519 (1061)
+.|+++ ++.+.++|..++++.++.+...+.+.+...+. +...+|+.+|+++|++|+|++...+. .+.
T Consensus 432 ~~f~~~---------R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~-~~~ 501 (971)
T 2x1g_F 432 ECFRCY---------RQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-EKR 501 (971)
T ss_dssp HHHHHH---------HHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------C
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 233333 34567788888888787777777777765542 12368999999999999999987654 356
Q ss_pred HHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHh
Q 036770 520 FLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 520 ~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c 599 (1061)
.++++++.+..++.. +..+.++...++++|+|++|+..|++++++++++++.++ + +.|+.+||++|.+||+.|
T Consensus 502 ~l~~l~~~l~~l~~~----d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 502 QIPRLMRVLAEIPYE----KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp HHHHHHHHHHHSCTT----TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcc----ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 788888866666631 134566777899999999999999999999999999988 3 789999999999999999
Q ss_pred hhcccccccCCCchHHHHHHHhHHHhhhc--CCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHh
Q 036770 600 KRKFVIVQVGENEPFVSELLSGLATTVAD--LEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQAR 677 (1061)
Q Consensus 600 ~~~l~~~~~~e~~p~l~~il~~l~~~~~~--l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~ 677 (1061)
+..+.+ |+++|++.+..+... ++.+.+..+|+|+|.++++.| ++.+..++..++.|+...|++++++..
T Consensus 575 ~~~l~p--------~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~ 645 (971)
T 2x1g_F 575 QLQLKP--------YADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQADS 645 (971)
T ss_dssp HHHHHH--------HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHhccc--------cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998864 999999998887765 778899999999999999988 455678999999999999988764321
Q ss_pred ccccccCCHHHHHHHHHHHhHHHHHHhhhCh-------------hhHHHHHHHHHHHHHHHHHHH---HHHHHhHhcCCC
Q 036770 678 QSVDFLKDQDVIRTVLNILQTNTSVASALGT-------------FFLSQISVIFLDMLNVYKMYS---ELISSSISSGGP 741 (1061)
Q Consensus 678 ~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~-------------~f~~~~~~i~~~ll~~y~~~~---~~i~~~~~~~g~ 741 (1061)
.+++....++..+.+++++..+++. ++.+..+.++|.+..++..+. .+++..+...
T Consensus 646 ------~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~-- 717 (971)
T 2x1g_F 646 ------KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAM-- 717 (971)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred ------CChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH--
Confidence 1334445667777777777666542 455666677776665554321 1111111100
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhcc--CCCChHHHHHHHHHHh
Q 036770 742 FASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGA--MIDDVPRIFEAIFQCT 819 (1061)
Q Consensus 742 ~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~--~~~~l~~i~~~l~~~t 819 (1061)
.+.+..+++.+.+++..+++. +.. .....+.+++|++++.++.++|.+ +.+.+..++..++.++
T Consensus 718 -------~~~~~~~~~~~~p~l~~~~~~------l~~-~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~ 783 (971)
T 2x1g_F 718 -------KHAITNLRSSFQPMLQDLCLF------IVA-SFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHS 783 (971)
T ss_dssp -------HHHHHHHHC--CTHHHHHHHH------HHH-HCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHH
T ss_pred -------HHHHHhhhhhccccHHHHHHH------HHH-HHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 011112222222222222211 111 222234588999999999999884 4566888888999999
Q ss_pred HHhhhh----ccCCChHhHHHHHHHHHHHHhhchhHhhcCChHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcc
Q 036770 820 LEMITK----NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQ-LKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 820 l~~i~~----~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~-~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~ 894 (1061)
+.++++ +++++||++++||.|+.+++.+||..++..| . +..++++++++++++++++.+++++++.+++....
T Consensus 784 ~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~--~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~ 861 (971)
T 2x1g_F 784 FKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT--LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR 861 (971)
T ss_dssp HHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTT--SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCc--ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 998875 5778999999999999999999999998643 5 89999999999999999999999999999887753
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 036770 895 ASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKL 974 (1061)
Q Consensus 895 ~~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 974 (1061)
......+|...++..++..++..+++..+++.+...+.+|..++.. ..+.+..||.+.
T Consensus 862 ~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~----------------------~~~~~~~~l~~~ 919 (971)
T 2x1g_F 862 NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRK----------------------YAAEMAVWMKSL 919 (971)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHH----------------------CcHHHHHHHHHH
Confidence 4566788999999999999999889999999999999998876653 133456799988
Q ss_pred hh-ccCCC--CCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhccc
Q 036770 975 LG-TSFPN--MTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSA 1020 (1061)
Q Consensus 975 l~-~~fp~--~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~ 1020 (1061)
|. +.||+ ++++++++|++++++.+.+.++||+++|||+..+|+.+|
T Consensus 920 l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r~~~~ 968 (971)
T 2x1g_F 920 MSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTRGLTE 968 (971)
T ss_dssp HTSSSCSCSSSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHC---
T ss_pred hcccCCCCCcCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHcCccc
Confidence 85 57885 899999999999988755899999999999999999977
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=573.96 Aligned_cols=906 Identities=16% Similarity=0.191 Sum_probs=589.5
Q ss_pred CHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcccHHHHHHHHc-cCCChHHHHHHHHHHHHHHhcccCCCCHHHHH
Q 036770 14 DVALLDATVAAFYGTG-SKEERTAADQILRDLQNNPDMWLQVVHILQ-NSKNLNTKFFALQVLEGVIKYRWNALPVEQRD 91 (1061)
Q Consensus 14 di~~l~~av~~ly~~~-~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~-~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~ 91 (1061)
.++++++++..+|+|+ +++.|++|+++|++||++|++|..+..+|. .+.++++||||+++|+++|+++|..+|+++|.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 3577999999999984 788899999999999999999999999886 56689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHHHHHHhc
Q 036770 92 GMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFD 171 (1061)
Q Consensus 92 ~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~ 171 (1061)
.||+++++++.+..... ...+.+|++|++++++.|++++||+.||++++++++.+++++..++++|.+|+.|+||+.+
T Consensus 89 ~Ir~~ll~~l~~~~~~~--~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNI--LEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHSSCCT--TSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcc
Confidence 99999999998753211 1135789999999999999999999999999999999988888899999999999999988
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------CcHHHHHHHHHHHHhcccccCcchhc
Q 036770 172 FSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS------------------QRTDLIRATLSTLHAFLSWIPLGYIF 233 (1061)
Q Consensus 172 ~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~------------------~~~~l~~~~L~~l~~~l~wi~~~~i~ 233 (1061)
+ ..+...|++.+++.|+.+++.|++++.+++++. .+..++..+|+|+.+|++|+|++.++
T Consensus 167 ~--~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~ 244 (1204)
T 3a6p_A 167 F--QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHIT 244 (1204)
T ss_dssp S--CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH
T ss_pred c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHH
Confidence 6 345568899999999999999999999999752 23468899999999999999999988
Q ss_pred ch--hhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHH-----HHHHHHHhhCCCCCChhhhhcCCCcch
Q 036770 234 ES--PLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYN-----VFMVQLQTILPPTTNIPEAYAHGNSEE 306 (1061)
Q Consensus 234 ~~--~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~-----~~l~~l~~~l~~~~~l~~~~~~~~~~d 306 (1061)
+. .+++.++.+++++++|..|++||++|+++++++.....+..+|. .++... ...+. .+..++|
T Consensus 245 ~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~-~~~~~--------~~~~e~d 315 (1204)
T 3a6p_A 245 AENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAA-QTADG--------GGLVEKH 315 (1204)
T ss_dssp TTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHH-HTCCC--------CSCCHHH
T ss_pred hccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHh-hcCCC--------CCCccHH
Confidence 75 49999999999999999999999999998654211011222221 111110 00100 0125678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccch--hhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036770 307 QAFIQNLALFFTSFFKFHIRVLESTQ--ENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVT 384 (1061)
Q Consensus 307 ~~~~~~l~~l~~~~~~~~~~ile~~~--~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~ 384 (1061)
.+|++++|++++++|+.+..++++.. ...+.+...+++++.++.+++.+++..+++||+.+.+...
T Consensus 316 ~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~------------ 383 (1204)
T 3a6p_A 316 YVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEI------------ 383 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccc------------
Confidence 89999999999999998777665310 0011223556999999999999999999999998875320
Q ss_pred cccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHH---HHhhCCCccccc----cc--cCCc-----hhHHhhhc
Q 036770 385 ANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLM---ICRMAKPEEVLI----VE--DENG-----NIVRETMK 450 (1061)
Q Consensus 385 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~l---i~km~~p~e~~~----~~--~d~~-----e~~~e~~~ 450 (1061)
......+.+++.+|+.++ +.||+||++... |. |+++ +.|++||
T Consensus 384 ----------------------~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~R- 440 (1204)
T 3a6p_A 384 ----------------------LSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSR- 440 (1204)
T ss_dssp ----------------------TTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHH-
T ss_pred ----------------------ccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHH-
Confidence 001123688999999999 899999985431 11 1111 2344444
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhcc-----------------------CCccccchhhHHHHHHHh
Q 036770 451 DNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLS-----------------------GEDWTWNNLNTLCWAIGS 507 (1061)
Q Consensus 451 d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~-----------------------~~~~~w~~le~~~~algs 507 (1061)
+.+.+.+..++.+.+..+...+.+.+...+. .....|...|+..+++++
T Consensus 441 --------k~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~lea 512 (1204)
T 3a6p_A 441 --------AQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLES 512 (1204)
T ss_dssp --------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHH
Confidence 4456777788888888887666665643321 113468888998888888
Q ss_pred hhCCCC-----hhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhc---
Q 036770 508 ISGSMM-----EEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHE--- 579 (1061)
Q Consensus 508 is~~~~-----~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~--- 579 (1061)
+...+. ++.....++++++.++++.. .+++.+.+ .+.++|+|.+|+..||++|++++++++..+..
T Consensus 513 v~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~----~~p~l~~~--~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~ 586 (1204)
T 3a6p_A 513 VITQMFRTLNREEIPVNDGIELLQMVLNFDT----KDPLILSC--VLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETV 586 (1204)
T ss_dssp HHHHHHHHSCTTCCCHHHHHHHHHHHHHCCC----SCHHHHHH--HHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTT
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHhCCC----CChHHHHH--HHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCc
Confidence 875541 11112345666666555422 13544433 45599999999999999999999999986644
Q ss_pred ---------CChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh--c-CCcchHHHHHHHHhhhhcc
Q 036770 580 ---------THPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA--D-LEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 580 ---------~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~--~-l~~~~~~~l~eaig~li~~ 647 (1061)
....|+.+||.+|.++|+.|+.+|.+ |+++|.+.+..+.. . ++..++..+|||++.+...
T Consensus 587 ~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p--------~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~ 658 (1204)
T 3a6p_A 587 EESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP--------NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQ 658 (1204)
T ss_dssp CSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG--------GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGG
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhcc
Confidence 23479999999999999999999986 89999999988765 5 8889999999999999656
Q ss_pred CCCHHHHHHHHHHHhhchHHHHHH-HHHHHhcccc---------------ccCCHHHH--HHHHHHHhHHHHHHhh----
Q 036770 648 ESDVQKREEYLQRLMLLPNQKWSE-IIAQARQSVD---------------FLKDQDVI--RTVLNILQTNTSVASA---- 705 (1061)
Q Consensus 648 ~~~~~~~~~~l~~Ll~~~~~~~~~-~~~~~~~~~~---------------~~~d~~~~--~~i~~il~~~~~i~~~---- 705 (1061)
+++.+.+..+++.++.|+.+.|.+ -++..-+++. ...|++.. .++.+.+..+.+..+.
T Consensus 659 ~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~ 738 (1204)
T 3a6p_A 659 FKNYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWP 738 (1204)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 677777888999999999999874 1111111111 11244333 3344433322222221
Q ss_pred ----------------------hChhhHHHHHHHHHHHHHHHHHHHH-----HHHH---------------hHhcCCCCc
Q 036770 706 ----------------------LGTFFLSQISVIFLDMLNVYKMYSE-----LISS---------------SISSGGPFA 743 (1061)
Q Consensus 706 ----------------------~~~~f~~~~~~i~~~ll~~y~~~~~-----~i~~---------------~~~~~g~~~ 743 (1061)
..+++.+.+..++|.++.+...... .... ..+..|...
T Consensus 739 ~~~~~~~~~gf~~~~~~~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~ 818 (1204)
T 3a6p_A 739 TDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQ 818 (1204)
T ss_dssp SSHHHHHHTTCEEEECSSCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCC
T ss_pred CChhhhhcCCceeccCCCCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCc
Confidence 1136678889999988887776541 1111 011122110
Q ss_pred ------c-------chhhhHHHHHHHHHHHHHHHHHHhhC-------CChh-hhhhc------CCCCcchHHHHHHH-HH
Q 036770 744 ------S-------KTSYVKLLRSVKRETLKLIETFLDKA-------EDQP-QIGKQ------NVPDARESEVLSLF-AT 795 (1061)
Q Consensus 744 ------~-------~~~~~~~~~~~~~~il~ll~~~i~~~-------~~~~-~l~~~------~~~~~r~~~~L~l~-~~ 795 (1061)
. .......+..+|..+..++....... .++. .+... ..+..+.+.+++.+ .-
T Consensus 819 ~~~~~~~~~~~~~~~~~l~~~~~~~re~~y~~lg~~~~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~p 898 (1204)
T 3a6p_A 819 PLLELNDSPVFKTVLERMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKP 898 (1204)
T ss_dssp CCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHHH
T ss_pred ccccccccCCCcCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHHH
Confidence 0 11122445566666666665543221 1221 11111 23332334444333 55
Q ss_pred HHHhhhccC-CCChHHHHHHHHHHhHHhhhh--------cc--------CC---ChH---------hHHHHHHHHHHHHh
Q 036770 796 IINKYKGAM-IDDVPRIFEAIFQCTLEMITK--------NF--------ED---YPE---------HRLKFFSLLRAIAT 846 (1061)
Q Consensus 796 li~~~~~~~-~~~l~~i~~~l~~~tl~~i~~--------~~--------~~---~Pd---------~~~~~f~ll~~i~~ 846 (1061)
++...-..+ ...+++++..+|.....-|+. +. .+ .-| +.+.+-.|+..++-
T Consensus 899 ~i~~CP~~~~~~~l~plL~~lf~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~ 978 (1204)
T 3a6p_A 899 LVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCV 978 (1204)
T ss_dssp HHHTCCGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555444333 445667777777665554431 10 00 001 22333333332210
Q ss_pred hc----------------------------------hhHhhcCChHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHH
Q 036770 847 HC----------------------------------FPALIRLSSQQLKLVMDSIIWAFRHTERN-IAETGLNLLLEMLK 891 (1061)
Q Consensus 847 ~~----------------------------------~~~l~~~~~~~~~~~~~~i~~~~~~~~~~-i~~~~l~~l~~l~~ 891 (1061)
.. -..++ ..+..+..++.....++...|+. .+..+..+...++.
T Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~ 1057 (1204)
T 3a6p_A 979 SKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLM-KHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLK 1057 (1204)
T ss_dssp C------------------------------CBCHHHHHHH-SSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHT
T ss_pred CCCCCCccccccccccccccccccccccchhhcchHHHHHh-cCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHH
Confidence 00 00111 12334666677666777777777 66666665556666
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHhc-cCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHH
Q 036770 892 NFQASEFCNQFYRTYFVTIEQEIFAVLT-DTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREY 970 (1061)
Q Consensus 892 ~~~~~~~~~~f~~~~~~~~~~~~~~~~t-d~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 970 (1061)
.+.......++ ...+...++..+. ...|...+..-+.++..++.... . .. .|
T Consensus 1058 ~~~~~~~~~~~----~~~l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~---------~---------~~-----~~ 1110 (1204)
T 3a6p_A 1058 QVLSGTLLADA----VTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALR---------P---------RY-----LE 1110 (1204)
T ss_dssp TSCSSCCCHHH----HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHST---------T---------TC-----ST
T ss_pred HHhcccCchHH----HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhC---------C---------CC-----cc
Confidence 55331100112 2223344444433 67788766666666655444321 0 11 25
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHhhcC---CChHHHHHHHHHHHhhhhhc
Q 036770 971 TIKLLGTSFPNMTAAEVTQFVDGLLESR---NDLSTFKNHIRDFLVQSKEF 1018 (1061)
Q Consensus 971 l~~~l~~~fp~~~~~q~~~f~~~l~~~~---~d~~~f~~~lrdF~~~~k~~ 1018 (1061)
+.+.|. ..|+++++.++.|..++.+.. ++.|+-|..++||+..+|+-
T Consensus 1111 ~~~vl~-~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g~ 1160 (1204)
T 3a6p_A 1111 IRAVME-QIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGK 1160 (1204)
T ss_dssp HHHHHT-TSSSCCHHHHHHHHHHSSCC------------------------
T ss_pred HHHHHH-hCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCC
Confidence 666665 679999999999999886432 35788999999998888875
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=496.60 Aligned_cols=304 Identities=48% Similarity=0.860 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhh-------------
Q 036770 712 SQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK------------- 778 (1061)
Q Consensus 712 ~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~------------- 778 (1061)
+|++.||.+++++|+.+|+.|..+++..|+.++++|.+|.||++||+|++++++|+++.++++.+.+
T Consensus 2 ~Ql~~iy~dml~lY~~~S~~Is~~va~~G~~~~k~~~vr~lR~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~D 81 (321)
T 1w9c_A 2 IQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLID 81 (321)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999988654432
Q ss_pred --cCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCC
Q 036770 779 --QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLS 856 (1061)
Q Consensus 779 --~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~ 856 (1061)
.+.|++|+|+||++++++|+++++.+.+.+|.|+++||+||++||++|+++|||||.+||+|+++++++||..++.+|
T Consensus 82 Y~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp 161 (321)
T 1w9c_A 82 YQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIP 161 (321)
T ss_dssp HHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSC
T ss_pred HHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 388999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHH
Q 036770 857 SQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA-SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQ 935 (1061)
Q Consensus 857 ~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~ 935 (1061)
+++++.+++|++||+||++|+|+++||+++.+++++++. ++++++||++||..+++++|.|+||+.|++||+.|+.+|+
T Consensus 162 ~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~ 241 (321)
T 1w9c_A 162 PTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILA 241 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHH
Confidence 999999999999999999999999999999999999974 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhh
Q 036770 936 HLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQS 1015 (1061)
Q Consensus 936 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~ 1015 (1061)
+|+.+++.|+|+.|++++. | ..|.+++++|+.++|.++||+++++|+..|++++++.++|..+||+++|||++++
T Consensus 242 ~lf~~ve~~~i~~pl~~~~--~---~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf~~~~d~~~Fk~~lrDFLIqi 316 (321)
T 1w9c_A 242 YMFNLVEEGKISTSLNPGN--P---VNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQI 316 (321)
T ss_dssp HHHHHHHTTCCCSCSCSSS--C---CCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccccccCCCC--C---cccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 9999999999999998864 3 2689999999999999999999999999999999999999999999999999999
Q ss_pred hhccc
Q 036770 1016 KEFSA 1020 (1061)
Q Consensus 1016 k~~~~ 1020 (1061)
|||+|
T Consensus 317 KEf~g 321 (321)
T 1w9c_A 317 KEFAG 321 (321)
T ss_dssp HTTTC
T ss_pred HHhcC
Confidence 99976
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=390.54 Aligned_cols=718 Identities=16% Similarity=0.257 Sum_probs=501.5
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHc--cCCChHHHHHHHHHHHHHHhcccCCCCHHHHH
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQ--NSKNLNTKFFALQVLEGVIKYRWNALPVEQRD 91 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~--~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~ 91 (1061)
+++++.+++...++| |++.|++|++.|++++++|++|..+..++. .+.++.+|++|+..|++.|+++|..++++++.
T Consensus 11 ~~~~l~~~l~~~~s~-d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~ 89 (852)
T 4fdd_A 11 GLQQILQLLKESQSP-DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 89 (852)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHH
T ss_pred hHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 577888888888887 788999999999999999999999999997 46688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHh
Q 036770 92 GMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVF 170 (1061)
Q Consensus 92 ~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~ 170 (1061)
.||+.+++.+.. + +..+|++++.+++.|+++++|..||++++.+++.++++ ....+.++.+|..++++..
T Consensus 90 ~ik~~ll~~l~~----~-----~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 90 FIKSECLNNIGD----S-----SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHTTTTC----S-----SHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC----C-----CHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH
Confidence 999999997632 2 24689999999999999999999999999999998864 5678889999999998863
Q ss_pred ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhc-chhhHHHHHhhCCC--
Q 036770 171 DFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIF-ESPLLETLLKFFPM-- 247 (1061)
Q Consensus 171 ~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~-~~~ll~~l~~~L~~-- 247 (1061)
.. +. +. .+...+..++..+.+.+. ..+++++..+++|+..++...+-.... -+.+++.++..+.+
T Consensus 161 ~~----~~---~~----~~~~~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~ 228 (852)
T 4fdd_A 161 EI----LD---SD----VLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE 228 (852)
T ss_dssp TH----HH---HC----SSSSCHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC
T ss_pred HH----hc---hh----hhcchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCC
Confidence 31 00 00 000123445555555554 356788999999999888654321100 13455666655443
Q ss_pred ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036770 248 PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRV 327 (1061)
Q Consensus 248 ~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~i 327 (1061)
+++|..|++||..++.. +...
T Consensus 229 ~~vr~~a~~~L~~l~~~-----------------------------------------------------------~~~~ 249 (852)
T 4fdd_A 229 PEVRKNVCRALVMLLEV-----------------------------------------------------------RMDR 249 (852)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------------------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHh-----------------------------------------------------------CHHH
Confidence 34666666666666552 1111
Q ss_pred hccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhh
Q 036770 328 LESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLL 407 (1061)
Q Consensus 328 le~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~ 407 (1061)
+.. ...+ .+.+++.+...+++++...+++||..+++.-
T Consensus 250 ~~~--~l~~----l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~------------------------------------ 287 (852)
T 4fdd_A 250 LLP--HMHN----IVEYMLQRTQDQDENVALEACEFWLTLAEQP------------------------------------ 287 (852)
T ss_dssp HGG--GHHH----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTST------------------------------------
T ss_pred HHH--HHHH----HHHHHHHHccCCcHHHHHHHHHHHHHHhcch------------------------------------
Confidence 110 0111 1244444445567788889999999876420
Q ss_pred hhhhhhHHhhHHHHHHHHHhhCCCcccccc-ccCCchhHHhhhcch-hhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHH
Q 036770 408 QRRQLYAVPLSKLRMLMICRMAKPEEVLIV-EDENGNIVRETMKDN-DVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLS 485 (1061)
Q Consensus 408 ~~~~~~~~~l~~L~~~li~km~~p~e~~~~-~~d~~e~~~e~~~d~-~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~ 485 (1061)
..+....+++..++++++.+|.++++...| +.|.++. +...|. ..+..++....+|..++...++.+...+++.+.
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed--~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~ 365 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG--SGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLK 365 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc--cccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 012234677888999999999887643322 1110000 000111 234456667788888776666677777777777
Q ss_pred hhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH--hH
Q 036770 486 KQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA--HW 563 (1061)
Q Consensus 486 ~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~--~~ 563 (1061)
..+.+ .+|+..++++|++|+|++...+. -..+++.+++.++.+..+ +...++...++++|+|++|+.. +.
T Consensus 366 ~~l~~--~~~~~R~aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 366 ELLFH--HEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSD-----KKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHTC--SSHHHHHHHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHhcC--CCHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHhccchHH
Confidence 66543 47999999999999999887543 346788888888887754 5566777788999999999875 46
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhh
Q 036770 564 KFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGH 643 (1061)
Q Consensus 564 ~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~ 643 (1061)
.++..+++.++..+.++++.|+..||.++..+|+.|+..+. ||+..++..+.........+....++++++.
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~--------~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~ 509 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV--------PYLAYILDTLVFAFSKYQHKNLLILYDAIGT 509 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG--------GGHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH--------hHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999888899999999999999999987765 4889999888877766666777789999999
Q ss_pred hhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHH
Q 036770 644 MIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLN 723 (1061)
Q Consensus 644 li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~ 723 (1061)
++.+++....+..+++.+|.++.+.|+.+. + .+++ +..+++|++.+++.+|..|.|+++.+++.+++
T Consensus 510 l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~-----d----~~~~----~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~ 576 (852)
T 4fdd_A 510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLK-----D----EDKD----LFPLLECLSSVATALQSGFLPYCEPVYQRCVN 576 (852)
T ss_dssp HHHHHGGGGCCHHHHHHHHHHHHHHHHHSC-----T----TCTT----HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHhcc-----c----ccHH----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 998877654456799999999888876422 1 1222 23678999999999999999999998887665
Q ss_pred HHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCc-chHHHHHHHHHHHHhhhc
Q 036770 724 VYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDA-RESEVLSLFATIINKYKG 802 (1061)
Q Consensus 724 ~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~-r~~~~L~l~~~li~~~~~ 802 (1061)
+.+..-. . ......+.. .. ..++. .....+.+++.++..+|.
T Consensus 577 ~l~~~l~---~-------------------------------~~~~~~~~~-~~--~~~d~~~~~~~l~~l~~l~~~l~~ 619 (852)
T 4fdd_A 577 LVQKTLA---Q-------------------------------AMLNNAQPD-QY--EAPDKDFMIVALDLLSGLAEGLGG 619 (852)
T ss_dssp HHHHHHH---H-------------------------------HHHHHHCTT-TS--CCCCTHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHH---H-------------------------------HHHhhcCCc-cc--CCCcchHHHHHHHHHHHHHHHHhH
Confidence 5442210 0 000000000 00 01110 113468999999999988
Q ss_pred cCCCCh--HHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHH
Q 036770 803 AMIDDV--PRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAE 880 (1061)
Q Consensus 803 ~~~~~l--~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 880 (1061)
.+.+++ +.++..++.+ ++ ...|++|++.+.+++.++..++..+.. .+..++..+..++.+.++++.+
T Consensus 620 ~~~~~~~~~~~~~~l~~~----l~---~~~~~vr~~a~~~l~~l~~~~~~~~~~----~l~~~lp~l~~~l~~~~~~v~~ 688 (852)
T 4fdd_A 620 NIEQLVARSNILTLMYQC----MQ---DKMPEVRQSSFALLGDLTKACFQHVKP----CIADFMPILGTNLNPEFISVCN 688 (852)
T ss_dssp GGHHHHHTCCHHHHHHHH----TT---CSSHHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHHHTCCTTSHHHHH
T ss_pred hHHHHhcCCcHHHHHHHH----hC---CCChhHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCccchHHHH
Confidence 776555 4555555443 22 246899999999999999988876532 4667777788888888889999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccCC-CccchHHHHHHHHHHHH
Q 036770 881 TGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTF-HKPGFKLHVLVLQHLFC 939 (1061)
Q Consensus 881 ~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~~-~~~~f~~~~~~L~~l~~ 939 (1061)
.++..+.++....+.. ++.|+..+++.++.++.++. ++......+..++.+..
T Consensus 689 ~a~~alg~i~~~~~~~------~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 689 NATWAIGEISIQMGIE------MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp HHHHHHHHHHHHHGGG------GGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHh------HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 9999888887776531 22334455556666665543 33333344555555444
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=348.08 Aligned_cols=740 Identities=15% Similarity=0.170 Sum_probs=478.5
Q ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhcC--cccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcc-------
Q 036770 13 MDVALLDATVAAF-YGTGSKEERTAADQILRDLQNN--PDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYR------- 81 (1061)
Q Consensus 13 ~di~~l~~av~~l-y~~~~~~~r~~A~~~L~~fq~s--~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~------- 81 (1061)
+|..++.+++..+ ++| |++.|++|+++|++++++ |++|..+.+++.++ .++++|++|+.+|++.|+++
T Consensus 1 Md~~~l~~~L~~~~~s~-d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~ 79 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSP-DQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79 (861)
T ss_dssp CCHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred CCHHHHHHHHHHcccCc-CHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHH
Confidence 3667899999999 887 777999999999999986 89999999999765 47899999999999999766
Q ss_pred ----cCC-CCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccC--Chh
Q 036770 82 ----WNA-LPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKT--SET 153 (1061)
Q Consensus 82 ----w~~-l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~--~~~ 153 (1061)
|.. ++++++..||+.+++.+.. + +..+|++++.+++.|+.++||. .||++++.+++.+++ ++.
T Consensus 80 ~~~~~~~~l~~~~~~~ik~~ll~~l~~----~-----~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~ 150 (861)
T 2bpt_A 80 FAQRWITQVSPEAKNQIKTNALTALVS----I-----EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHTC----S-----SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHH
T ss_pred HHHhHhhhCCHHHHHHHHHHHHHHHCC----C-----chHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHH
Confidence 565 9999999999999998743 1 2457999999999999999995 999999999999976 456
Q ss_pred HHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcccccCcchh
Q 036770 154 ICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTDLIRATLSTLHAFLSWIPLGYI 232 (1061)
Q Consensus 154 ~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~l~~~~L~~l~~~l~wi~~~~i 232 (1061)
.+..++.+|..+++++.. .. | .+....+.++..+...+.... +++++..+++|+.+++.|+..+.-
T Consensus 151 ~r~~al~~l~~l~~~~~~----~~---~------~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 217 (861)
T 2bpt_A 151 VKRASLLALGYMCESADP----QS---Q------ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217 (861)
T ss_dssp HHHHHHHHHHHHHHTSST----TS---S------TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred HHHHHHHHHHHHHHcCCh----hh---h------HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 788899999999997532 11 0 122356778888888887643 688999999999999988653321
Q ss_pred c---chhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchH
Q 036770 233 F---ESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQ 307 (1061)
Q Consensus 233 ~---~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~ 307 (1061)
. .+.+++.++..+. +++.|..|++||.+++...+. .+..
T Consensus 218 ~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~----------------------------------- 261 (861)
T 2bpt_A 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT-FMKP----------------------------------- 261 (861)
T ss_dssp SHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-GCHH-----------------------------------
T ss_pred ChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHH-----------------------------------
Confidence 1 1235555555444 345667777777666653110 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHh---ccCCCcccc
Q 036770 308 AFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAH---NNLENPAVT 384 (1061)
Q Consensus 308 ~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~---~~~~~~~~~ 384 (1061)
++.. ..+..++.....+++++...+++||..+++...... ...+.
T Consensus 262 -~l~~---------------------------~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~---- 309 (861)
T 2bpt_A 262 -YMEQ---------------------------ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQ---- 309 (861)
T ss_dssp -HHHH---------------------------THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred -HHHH---------------------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccC----
Confidence 0000 001222222233456788889999999887642100 00000
Q ss_pred cccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHH
Q 036770 385 ANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRET 464 (1061)
Q Consensus 385 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~ 464 (1061)
.| .. .....++++..+++.++..|..+++. +|++ ++..++....+
T Consensus 310 ~~----------~~----------~~~~~~~~~~~il~~ll~~l~~~~~d----~~d~-----------~~~~r~~a~~~ 354 (861)
T 2bpt_A 310 SP----------LQ----------SYNFALSSIKDVVPNLLNLLTRQNED----PEDD-----------DWNVSMSAGAC 354 (861)
T ss_dssp CS----------CC----------CCCHHHHHHHHHHHHHHHHTTCCCCC-----CCC-----------CCHHHHHHHHH
T ss_pred Cc----------hh----------hHHHHHHHHHHHHHHHHHHHHhcccc----cccc-----------cCcHHHHHHHH
Confidence 00 00 11123556788888999999876531 1111 12234455566
Q ss_pred HHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHH
Q 036770 465 LIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVI 544 (1061)
Q Consensus 465 L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v 544 (1061)
|..++...++.+...+++.+.+.+++ .+|+..+++++++|++++...++.-..+++.+++.|++...+ +...+
T Consensus 355 L~~l~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d-----~~~~v 427 (861)
T 2bpt_A 355 LQLFAQNCGNHILEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND-----QSLQV 427 (861)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC-----SCHHH
T ss_pred HHHHHHHccHhHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC-----CcHHH
Confidence 66665443455666677777665533 479999999999999998765444467788888888876653 34555
Q ss_pred HHhHHHHhccchHHHHHh---HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHh
Q 036770 545 ASNIMYVVGQYPRFLRAH---WKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSG 621 (1061)
Q Consensus 545 ~s~i~~~ig~y~~~l~~~---~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~ 621 (1061)
+...++++|+|++++..+ +++++.+++.++..++++ +.|+..||.++..+++.|... .++...||+..++..
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~----~~~~l~~~~~~il~~ 502 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEA----TPSPIYNFYPALVDG 502 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSS----SSCGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccc----cchhhHHHHHHHHHH
Confidence 666889999999999764 568999999999988775 899999999999999998620 011223688999888
Q ss_pred HHHhhhcCC--cchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccC--C-HHHHHHHHHHH
Q 036770 622 LATTVADLE--PHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLK--D-QDVIRTVLNIL 696 (1061)
Q Consensus 622 l~~~~~~l~--~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~--d-~~~~~~i~~il 696 (1061)
+......-+ ..-+...++++|.++...+.. ...++..++.++...|...+.... .... + .........++
T Consensus 503 L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~---~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 503 LIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETSASISTFVMDKLGQTMSVDE---NQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHHHHHHTTSCG---GGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcchHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHHHHHHhhhc---ccCChhhHHHHHHHHHHHH
Confidence 877665333 456788999999999988864 246788888888877765421100 0001 1 11111235677
Q ss_pred hHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHH-HH-HHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChh
Q 036770 697 QTNTSVASALGTFFLSQISVIFLDMLNVYKMYSE-LI-SSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQP 774 (1061)
Q Consensus 697 ~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~-~i-~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~ 774 (1061)
.++..+++++|..+.|++..+++.+++.++.... .+ ...+...| ......+..+.+.+..++..+ .
T Consensus 578 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~---------~l~~~~~~~~~~~l~~i~~~l---~ 645 (861)
T 2bpt_A 578 TVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS---------ALAASLGKGFEKYLETFSPYL---L 645 (861)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH---------HHHHHHGGGGHHHHHHHHHHH---H
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH---------HHHHHHhhhHHHHHHHHHHHH---H
Confidence 8888899999988888888888888777653311 11 00010000 000011111111111111100 0
Q ss_pred hhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhc
Q 036770 775 QIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIR 854 (1061)
Q Consensus 775 ~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~ 854 (1061)
.......+..| ...+.+++.++...|..+.++++.++..++. .+.++ ..++++|...+..+..++.++...+..
T Consensus 646 ~~l~~~~~~vr-~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~----~l~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~ 719 (861)
T 2bpt_A 646 KALNQVDSPVS-ITAVGFIADISNSLEEDFRRYSDAMMNVLAQ----MISNP-NARRELKPAVLSVFGDIASNIGADFIP 719 (861)
T ss_dssp HHHHCTTSHHH-HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHH----HHHCT-TCCTTHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHhccccHHHH-HHHHHHHHHHHHHhchhccchHHHHHHHHHH----HhCCc-cccHhhhHHHHHHHHHHHHHhhhhHHH
Confidence 00111122222 3478888889988887666666666655543 33331 245899999999999999987665432
Q ss_pred CChHHHHHHHHHHHHHhcCCC-----------hhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcc
Q 036770 855 LSSQQLKLVMDSIIWAFRHTE-----------RNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTD 920 (1061)
Q Consensus 855 ~~~~~~~~~~~~i~~~~~~~~-----------~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td 920 (1061)
.+..++..+..++.+.. ..+...+++.+..++...+.. .+.+..|...++..+...+.|
T Consensus 720 ----~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~~~~~~i~~~l~~~~~d 789 (861)
T 2bpt_A 720 ----YLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK---PEALFPYVGTIFQFIAQVAED 789 (861)
T ss_dssp ----HHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHGGGHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHHHcC
Confidence 34555555555555421 235566777777777666532 233444555555544444444
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=340.88 Aligned_cols=707 Identities=12% Similarity=0.138 Sum_probs=423.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcccC------CCC
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYRWN------ALP 86 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~w~------~l~ 86 (1061)
|++.+.+++....+| |++.| |+++|++++++|++|..+.+++.+. .+.++|++|+.+||+.|+++|. .+|
T Consensus 3 d~~~l~~~L~~~~sp-d~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~ 79 (960)
T 1wa5_C 3 DLETVAKFLAESVIA-STAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79 (960)
T ss_dssp HHHHHHHHHHHTTSG-GGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred cHHHHHHHHHHhcCC-CHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence 567888888887776 55455 9999999999999999999999653 4689999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHH
Q 036770 87 VEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLL 165 (1061)
Q Consensus 87 ~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l 165 (1061)
+++|..||+.+++.+... +..+|++++.+++.|++++||+.||++++++++.++++ ......+|.+|..+
T Consensus 80 ~~~k~~ik~~ll~~l~~~---------~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i 150 (960)
T 1wa5_C 80 ANNVELIKKEIVPLMISL---------PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSI 150 (960)
T ss_dssp HHHHHHHHHHHHHHHHHS---------CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999998762 25689999999999999999999999999999998765 35677889999988
Q ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCc--------HHHHHHHHHHHHhcccccCcchhcc
Q 036770 166 SEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYV---LSASQR--------TDLIRATLSTLHAFLSWIPLGYIFE 234 (1061)
Q Consensus 166 ~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~---L~~~~~--------~~l~~~~L~~l~~~l~wi~~~~i~~ 234 (1061)
+++.-. .--...-+.+++..+...++.+++++..+ ++.... .++...+++++.+ +.|.+....+.
T Consensus 151 ~~~~~~---~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~-l~~~~~~~~~~ 226 (960)
T 1wa5_C 151 FKRWRP---LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYD-FNCQDIPEFFE 226 (960)
T ss_dssp HGGGTT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHH-HHSSCCCHHHH
T ss_pred HHHHHH---hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhccchHHHH
Confidence 875311 00112233456666667777777766554 443221 1233446666654 33333322221
Q ss_pred ---hhhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHH
Q 036770 235 ---SPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQ 311 (1061)
Q Consensus 235 ---~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~ 311 (1061)
..+++.+.+++ ....+. . ..+ .+. ...........
T Consensus 227 ~~~~~~~~~~~~~l-----------------~~~~p~--------------------~--~~d-~d~--~~~~~~~~vk~ 264 (960)
T 1wa5_C 227 DNIQVGMGIFHKYL-----------------SYSNPL--------------------L--EDP-DET--EHASVLIKVKS 264 (960)
T ss_dssp HTHHHHHHHHHHHH-----------------SCCSCC--------------------C--C---------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------cCCCCc--------------------c--cCC-ccc--ccccHHHHHHH
Confidence 12222222221 110000 0 000 000 00000112233
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCC
Q 036770 312 NLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISY-VDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGL 390 (1061)
Q Consensus 312 ~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~-~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~ 390 (1061)
.+++.++.+.+.+...+. +...+.+...++.+..... ..++++...+++||..+++.
T Consensus 265 ~~~~~l~~l~~~~~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-------------------- 322 (960)
T 1wa5_C 265 SIQELVQLYTTRYEDVFG--PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-------------------- 322 (960)
T ss_dssp HHHHHHHHHHHHCHHHHH--HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS--------------------
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc--------------------
Confidence 445555555555433331 1111222111222221111 23567889999999987632
Q ss_pred CCCCCchhhhhhhhhhhhhhhhhH--HhhHHHH-HHHHHhhCCCcccc-ccccCCchhHHhhhcchhhHHHHHHHHHHHH
Q 036770 391 PMPLLPSVVDGIGAQLLQRRQLYA--VPLSKLR-MLMICRMAKPEEVL-IVEDENGNIVRETMKDNDVLVQYKIMRETLI 466 (1061)
Q Consensus 391 ~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~L~-~~li~km~~p~e~~-~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~ 466 (1061)
...+..++ +++.+++ .+++..|.++++.. .|++|..|.+++...+.+....++...++|.
T Consensus 323 ----------------~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 323 ----------------PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp ----------------HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred ----------------HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 11122343 7889999 78899999876543 3766655555544434444456777888888
Q ss_pred HHhcCCHHhHHHHHHHHHHhhcc----CCccccchhhHHHHHHHhhhCCCC-hh----------HHhHHHHH-HHHHHHH
Q 036770 467 YLSHLDHEDTEKQMLKKLSKQLS----GEDWTWNNLNTLCWAIGSISGSMM-EE----------QENRFLVM-VIRDLLN 530 (1061)
Q Consensus 467 ~l~~l~~~~~~~~i~~~L~~~~~----~~~~~w~~le~~~~algsis~~~~-~~----------~e~~~l~~-vi~~Ll~ 530 (1061)
.++...++.+...+++.+.+.+. ++..+|+..|++++++|++++... .+ .-..++.+ +++.| +
T Consensus 387 ~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l-~ 465 (960)
T 1wa5_C 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL-T 465 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH-H
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh-c
Confidence 88877776666666665554432 234679999999999999985321 00 11233332 34433 1
Q ss_pred hhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhh------hccc
Q 036770 531 LCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK------RKFV 604 (1061)
Q Consensus 531 l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~------~~l~ 604 (1061)
-+. ...+.++...+|++|+|++|+ +++++..+++.++..++++++.|+..||++|.++|+.+. ..+.
T Consensus 466 ~~~-----~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~ 538 (960)
T 1wa5_C 466 SNN-----IPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFH 538 (960)
T ss_dssp CSS-----CSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSC
T ss_pred CCC-----CCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccccc
Confidence 110 114555666889999999998 678999999999998888889999999999999997421 0110
Q ss_pred ccccCCCchHHHHHHHhHHHhhhcC---Cc--chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhcc
Q 036770 605 IVQVGENEPFVSELLSGLATTVADL---EP--HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQS 679 (1061)
Q Consensus 605 ~~~~~e~~p~l~~il~~l~~~~~~l---~~--~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~ 679 (1061)
. ....||+..+++.+-...... +. .....+++|++.++...+..- ..++..++..+...|+... ++
T Consensus 539 ~---~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~--~p~~~~l~~~L~~~l~~~~----~~ 609 (960)
T 1wa5_C 539 K---EDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI--QPLFPQLLAQFIEIVTIMA----KN 609 (960)
T ss_dssp G---GGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT--GGGHHHHHHHHHHHHHHHT----TS
T ss_pred H---HHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHH----hC
Confidence 0 123469999999887765543 11 145689999999998877532 2477778877777666532 22
Q ss_pred ccccCCHHHHHHHHHHHhHHHHHHhhhCh-hhHHHHHHHHHHHHHHHHH--------HHHHHHHhHhcCCCCc--cchhh
Q 036770 680 VDFLKDQDVIRTVLNILQTNTSVASALGT-FFLSQISVIFLDMLNVYKM--------YSELISSSISSGGPFA--SKTSY 748 (1061)
Q Consensus 680 ~~~~~d~~~~~~i~~il~~~~~i~~~~~~-~f~~~~~~i~~~ll~~y~~--------~~~~i~~~~~~~g~~~--~~~~~ 748 (1061)
+ .++.. .+.++.+++.++.+.++ .+.+..+.++|.+..+... ..+++........... ...-+
T Consensus 610 ~---~~~~~---~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 683 (960)
T 1wa5_C 610 P---SNPRF---THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLA 683 (960)
T ss_dssp C---CCHHH---HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGH
T ss_pred C---CCcHH---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2 23322 25678888888877443 4555556666665543321 1122211111110000 00000
Q ss_pred hHHH--H-----HHHHHHHHHHHHHHhhCCC----hhhhhh---c--CCCCcchHHHHHHHHHHHHhhhcc-CCCChHHH
Q 036770 749 VKLL--R-----SVKRETLKLIETFLDKAED----QPQIGK---Q--NVPDARESEVLSLFATIINKYKGA-MIDDVPRI 811 (1061)
Q Consensus 749 ~~~~--~-----~~~~~il~ll~~~i~~~~~----~~~l~~---~--~~~~~r~~~~L~l~~~li~~~~~~-~~~~l~~i 811 (1061)
.+.+ . ..-..+.+.+..|+....+ .+.+.. . .... .+.....+++.++..+++. +.++++.+
T Consensus 684 ~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~a~~ll~~i~~~~~~~~~~~yl~~i 762 (960)
T 1wa5_C 684 QPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA-YEVHGFDLLEHIMLLIDMNRLRPYIKQI 762 (960)
T ss_dssp HHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT-THHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc-ccchHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 0000 0 0001223344444332211 111111 0 1111 2466889999999999887 88888888
Q ss_pred HHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHh
Q 036770 812 FEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIAT 846 (1061)
Q Consensus 812 ~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~ 846 (1061)
+..++.. ++. ...+++++.+..++..++-
T Consensus 763 ~~~l~~~----l~~--~~~~~~~~~~l~~~~~~~~ 791 (960)
T 1wa5_C 763 AVLLLQR----LQN--SKTERYVKKLTVFFGLISN 791 (960)
T ss_dssp HHHHHHG----GGS--SCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----Hhh--CCcHhHHHHHHHHHHHHHH
Confidence 8776644 332 2457788777777766653
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-27 Score=303.60 Aligned_cols=716 Identities=14% Similarity=0.183 Sum_probs=449.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcC--cccHHHHHHHHccC-CChHHHHHHHHHHHHHHh-----------cccC
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNN--PDMWLQVVHILQNS-KNLNTKFFALQVLEGVIK-----------YRWN 83 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s--~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~-----------~~w~ 83 (1061)
+.+++..+++| +++.|++|+++|++++++ |+.|..+.+++.++ .++.+|.+|+.+|++.|. ++|.
T Consensus 3 l~~~L~~~~s~-d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 3 LITILEKTVSP-DRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp HHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 56778888776 777999999999999987 88999999999764 468999999999999984 5699
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHccCC---hhHHHHHH
Q 036770 84 ALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWP-ARWRSFIPDLVAAAKTS---ETICENCM 159 (1061)
Q Consensus 84 ~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p-~~Wp~~i~~l~~~~~~~---~~~~~~~L 159 (1061)
.++++.+..||+.+++.+.. .+ ..+ ++++.+++.|+..++| ..||++++.+++.+.++ +.....++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~--~~-------~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al 151 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT--ET-------YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT--CC-------SSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC--Cc-------HHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999998743 11 124 7899999999999999 89999999999988654 46778899
Q ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcccccCcchh---cch
Q 036770 160 AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTDLIRATLSTLHAFLSWIPLGYI---FES 235 (1061)
Q Consensus 160 ~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~l~~~~L~~l~~~l~wi~~~~i---~~~ 235 (1061)
.+|..+++++.. +.+....+.++..+.+.+.... +..++..+++|+..++.+++.+.. ..+
T Consensus 152 ~~l~~l~~~~~~---------------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (876)
T 1qgr_A 152 EAIGYICQDIDP---------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (876)
T ss_dssp HHHHHHHHHSCH---------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH
T ss_pred HHHHHHHHhcCH---------------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999987421 1133467788888888887653 678899999999999877543211 011
Q ss_pred hhHHHHHhhCCC--ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHH
Q 036770 236 PLLETLLKFFPM--PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNL 313 (1061)
Q Consensus 236 ~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l 313 (1061)
.+++.++..+.+ +++|..|++||..++...+
T Consensus 217 ~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~----------------------------------------------- 249 (876)
T 1qgr_A 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY----------------------------------------------- 249 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG-----------------------------------------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH-----------------------------------------------
Confidence 245555554442 3455666666666555311
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHH-HHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHH---hcc-CCCcccccccC
Q 036770 314 ALFFTSFFKFHIRVLESTQENISALL-MGLEYLINISYVDETEVFKVCLDYWNSFVLELFDA---HNN-LENPAVTANMM 388 (1061)
Q Consensus 314 ~~l~~~~~~~~~~ile~~~~~~~~~~-~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~---~~~-~~~~~~~~~~~ 388 (1061)
..+. +.+. ..+..++.+...+++++...+++||..+++..... ..+ .+... .|.
T Consensus 250 ------------~~~~------~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--~~~- 308 (876)
T 1qgr_A 250 ------------QYME------TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR--PPE- 308 (876)
T ss_dssp ------------GGCH------HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCS-
T ss_pred ------------HHHH------HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCC--Ccc-
Confidence 1000 0000 11233333334456677888899999887653210 000 00000 000
Q ss_pred CCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHH
Q 036770 389 GLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYL 468 (1061)
Q Consensus 389 g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l 468 (1061)
.......++.+..+++.++..|...++ |+|++ ++..++....+|..+
T Consensus 309 ------------------~~~~~~~~~~~~~ll~~ll~~l~~~~~----d~~~~-----------~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 309 ------------------HTSKFYAKGALQYLVPILTQTLTKQDE----NDDDD-----------DWNPCKAAGVCLMLL 355 (876)
T ss_dssp ------------------SCCCCHHHHHHHHHHHHHHHHTTCCCS----SCCTT-----------CCCHHHHHHHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHhHHHHHHhhcccc----ccccc-----------ccHHHHHHHHHHHHH
Confidence 000112234567778888888876542 11111 122233444555555
Q ss_pred hcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhH
Q 036770 469 SHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNI 548 (1061)
Q Consensus 469 ~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i 548 (1061)
+...++.+...+++.+...+. ..+|+..++++|++|.+++...++.-..+++++++.++....+ +...++...
T Consensus 356 ~~~~~~~~~~~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-----~~~~vr~~a 428 (876)
T 1qgr_A 356 ATCCEDDIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-----PSVVVRDTA 428 (876)
T ss_dssp HHHHGGGGHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-----SSHHHHHHH
T ss_pred HHHCcHhhHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC-----CCHHHHHHH
Confidence 544345555666666665543 3479999999999999998876443346788888888776643 345566667
Q ss_pred HHHhccchHHHHH---hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc------cccCCCchHHHHHH
Q 036770 549 MYVVGQYPRFLRA---HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI------VQVGENEPFVSELL 619 (1061)
Q Consensus 549 ~~~ig~y~~~l~~---~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~------~~~~e~~p~l~~il 619 (1061)
++++|++++++.. +..+++.+++.++..+.++ +.|+..|+.++..++..|+.+... .......||+..++
T Consensus 429 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il 507 (876)
T 1qgr_A 429 AWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV 507 (876)
T ss_dssp HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH
T ss_pred HHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHH
Confidence 8899999999865 4578999999999988774 899999999999999998721000 00112347899999
Q ss_pred HhHHHhhhcCC---cchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHH-HHHH
Q 036770 620 SGLATTVADLE---PHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRT-VLNI 695 (1061)
Q Consensus 620 ~~l~~~~~~l~---~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~i 695 (1061)
..+.......+ ..-+..++++++.++...+.+ ...++..++.++...|...+... .+.....|++.... ...+
T Consensus 508 ~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~d~~~~~~~~~~~ 584 (876)
T 1qgr_A 508 QKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD--CYPAVQKTTLVIMERLQQVLQME-SHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp HHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST--THHHHHHHHHHHHHHHHHHHTTT-TSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh--hHHHHHHHHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHHHH
Confidence 88877655432 244677999999999998864 34688999998888887653211 00000012222122 2566
Q ss_pred HhHHHHHHhhhC-hhhHHHHHHHHHHHHHHHHHHH---HHHHHhHhcCCCCc--cchhhhHHHHHHHHHHHHHHHHHHhh
Q 036770 696 LQTNTSVASALG-TFFLSQISVIFLDMLNVYKMYS---ELISSSISSGGPFA--SKTSYVKLLRSVKRETLKLIETFLDK 769 (1061)
Q Consensus 696 l~~~~~i~~~~~-~~f~~~~~~i~~~ll~~y~~~~---~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~il~ll~~~i~~ 769 (1061)
+.++..++.++| ..+.|+++.++|.++..++..+ .+-...+...|..+ .+..+...+. .+++.+...+..
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----~~~~~l~~~l~~ 660 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME----AFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHcC
Confidence 778888999999 8888888889998887766432 11011111000000 0000000010 111111111111
Q ss_pred CCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhch
Q 036770 770 AEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCF 849 (1061)
Q Consensus 770 ~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~ 849 (1061)
. ..+..| ...+.+++.++...|..+.++++.++.. .+..++.+ +.++++|......++.++..+.
T Consensus 661 ~---------~~~~vr-~~a~~~l~~l~~~~~~~~~~~~~~i~~~----l~~~l~~~-~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 661 Y---------AEYQVC-LAAVGLVGDLCRALQSNIIPFCDEVMQL----LLENLGNE-NVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp C---------TTHHHH-HHHHHHHHHHHHHHGGGGHHHHHHHHHH----HHHHHTCT-TSCGGGHHHHHHHHHHHHHHHG
T ss_pred c---------chHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHhCCc-cccHHhhHHHHHHHHHHHHHhc
Confidence 0 011122 2367888888888886555444444444 44444431 2457899999999999988765
Q ss_pred hHhhcCChHHHHHHHHHHHHHhcCCC----h-------hHHHHHHHHHHHHHHhcc
Q 036770 850 PALIRLSSQQLKLVMDSIIWAFRHTE----R-------NIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 850 ~~l~~~~~~~~~~~~~~i~~~~~~~~----~-------~i~~~~l~~l~~l~~~~~ 894 (1061)
..+.. .+..++..+..+++... . ++...+++.+..++...+
T Consensus 726 ~~~~~----~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 726 GEFKK----YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp GGGGG----GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHH----HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55422 34555555555554431 1 344455666666655544
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=230.47 Aligned_cols=432 Identities=16% Similarity=0.208 Sum_probs=284.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhc--CcccHHHHHHHHccCC-ChHHHHHHHHHHHHHHhcc-----------cC
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQN--NPDMWLQVVHILQNSK-NLNTKFFALQVLEGVIKYR-----------WN 83 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~--s~~aw~~~~~iL~~s~-~~~~rffaa~~L~~~I~~~-----------w~ 83 (1061)
+.+++..+++| |++.|++|+++|+++++ .|+.|..+.+++.++. ++.+|.+|+.+|++.|+++ |.
T Consensus 3 l~~~L~~~~s~-d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 3 LITILEKTVSP-DRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 66788888877 77799999999999998 5899999999997653 7899999999999999876 68
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccC---ChhHHHHHH
Q 036770 84 ALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKT---SETICENCM 159 (1061)
Q Consensus 84 ~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~---~~~~~~~~L 159 (1061)
.++++.+..||+.+++.+.. .. ..+ ++++.+++.|+.++||. .||++++.+++.+++ ++..+..++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~--~~-------~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGT--ET-------YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTC--CC-------SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC--CC-------chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 89999999999999998754 11 225 88999999999999995 999999999998875 456788999
Q ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcccccCcchh---cch
Q 036770 160 AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTDLIRATLSTLHAFLSWIPLGYI---FES 235 (1061)
Q Consensus 160 ~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~l~~~~L~~l~~~l~wi~~~~i---~~~ 235 (1061)
.+|..++++... .. +....+.++..+..++.... ++.++..+++|+.+++.++....- +.+
T Consensus 152 ~~l~~l~~~~~~---~~------------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (462)
T 1ibr_B 152 EAIGYICQDIDP---EQ------------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (462)
T ss_dssp HHHHHHHHHSCG---GG------------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH
T ss_pred HHHHHHHHhCCc---hh------------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999998521 11 12345678888888887654 688999999999998865431110 001
Q ss_pred hhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHH
Q 036770 236 PLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLAL 315 (1061)
Q Consensus 236 ~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~ 315 (1061)
.+++.+...+.+ .|.+.....++
T Consensus 217 ~l~~~l~~~~~~---------------------------------------------------------~~~~vr~~~~~ 239 (462)
T 1ibr_B 217 FIMQVVCEATQC---------------------------------------------------------PDTRVRVAALQ 239 (462)
T ss_dssp HHHHHHHHHTTC---------------------------------------------------------SSHHHHHHHHH
T ss_pred HHHHHHHHhcCC---------------------------------------------------------CCHHHHHHHHH
Confidence 123333322221 12223333444
Q ss_pred HHHHHHHHHHHHhccchhhH-HHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCC
Q 036770 316 FFTSFFKFHIRVLESTQENI-SALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPL 394 (1061)
Q Consensus 316 l~~~~~~~~~~ile~~~~~~-~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~ 394 (1061)
.+..+++.+...+... .. .+ +..++.+....++++...+++||..+++.............. . +.
T Consensus 240 ~l~~l~~~~~~~~~~~--~~~~l----~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~-~---~~---- 305 (462)
T 1ibr_B 240 NLVKIMSLYYQYMETY--MGPAL----FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE-Q---GR---- 305 (462)
T ss_dssp HHHHHHHHCGGGCTTT--TTTTH----HHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC-S---SS----
T ss_pred HHHHHHHHHHHHHHHH--HHHHH----HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccc-c---CC----
Confidence 4444444332222110 01 11 122333333456677888999999988764211000000000 0 00
Q ss_pred CchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHH
Q 036770 395 LPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHE 474 (1061)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~ 474 (1061)
+. . .....+.++++..+++.+++.|...++. +++ +++..+.....+|..++...++
T Consensus 306 -~~-~-------~~~~~~~~~~~~~l~p~l~~~l~~~d~d----~~~-----------~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 306 -PP-E-------HTSKFYAKGALQYLVPILTQTLTKQDEN----DDD-----------DDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp -CS-S-------CCCCCHHHHHHHHHHHHHHHHTTCCCSS----CCT-----------TCCSHHHHHHHHHHHHHHHTTT
T ss_pred -Cc-c-------chhHHHHHHHhhhccHHHHHHHHhcccc----ccc-----------ccchHHHHHHHHHHHHHHhccH
Confidence 00 0 0111234556778888888888654321 111 1122234555667776655456
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
.+...+++.+...+. ..+|+..+++++++|++++...++.-..+++.+++.++....+ +...++...++++|+
T Consensus 362 ~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-----~~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 362 DIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-----PSVVVRDTAAWTVGR 434 (462)
T ss_dssp THHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH
Confidence 666667777766553 3579999999999999998654332234567788877776654 345666778899999
Q ss_pred chHHHHH---hHHHHHHHHHHHHHhh
Q 036770 555 YPRFLRA---HWKFLKTVVNKLFEFM 577 (1061)
Q Consensus 555 y~~~l~~---~~~~L~~vl~~L~~~~ 577 (1061)
+++++.. ++.+++++++.|+..+
T Consensus 435 ~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 435 ICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999976 4679999999988754
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-10 Score=148.45 Aligned_cols=659 Identities=13% Similarity=0.129 Sum_probs=349.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCc------cc----HHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCC
Q 036770 16 ALLDATVAAFYGTGSKEERTAADQILRDLQNNP------DM----WLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNAL 85 (1061)
Q Consensus 16 ~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~------~a----w~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l 85 (1061)
..+.+++..+.+| |+..|.+|.+-|.+.-+.+ .. ...+...|. +.+..+|..|+..|...+. .+
T Consensus 6 ~~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~----~~ 79 (1230)
T 1u6g_C 6 YHISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS----KV 79 (1230)
T ss_dssp HHHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT----TS
T ss_pred hHHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH----hC
Confidence 4577778777666 7779999988777654433 11 222334443 5789999999999988775 36
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC---------ccchhHHHHHHHcc--CChhH
Q 036770 86 PVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA---------RWRSFIPDLVAAAK--TSETI 154 (1061)
Q Consensus 86 ~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~---------~Wp~~i~~l~~~~~--~~~~~ 154 (1061)
+++....++..++..+. ++. ..+|...+.+++.++....|. .|+.+++.++..+. .+...
T Consensus 80 ~~~~~~~i~~~Ll~~l~----d~~-----~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 80 KEYQVETIVDTLCTNML----SDK-----EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp CHHHHHHHHHHHHHHTT----CSS-----SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred CHHHHHHHHHHHHHHhc----CCc-----HHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHH
Confidence 77677777777776543 221 236888899999999887765 59999999999886 33566
Q ss_pred HHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcc
Q 036770 155 CENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE 234 (1061)
Q Consensus 155 ~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~ 234 (1061)
...++.+|..+++...+ .+. ...+.++..+...+.. .++.++..+++|++.++...+-.. +
T Consensus 151 ~~~al~~l~~~~~~~~~----~l~------------~~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~~~-~- 211 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGG----LLV------------NFHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIV-F- 211 (1230)
T ss_dssp HHHHHHHHHHHHHHTCS----SCT------------TTHHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC-----C-
T ss_pred HHHHHHHHHHHHHHhHh----HHH------------HHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCHHH-H-
Confidence 77788888888875432 121 1335566666666653 456788899999999887665432 2
Q ss_pred hhhHHHHHhhCC---CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHH
Q 036770 235 SPLLETLLKFFP---MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQ 311 (1061)
Q Consensus 235 ~~ll~~l~~~L~---~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~ 311 (1061)
+.+++.+...|. ++..|..+++|+..++... +..+..
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~--------------------------------------- 251 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA-GHRIGE--------------------------------------- 251 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS-SGGGTT---------------------------------------
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh-HHHHHH---------------------------------------
Confidence 245555554332 2345666666666665421 100000
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCC
Q 036770 312 NLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLP 391 (1061)
Q Consensus 312 ~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~ 391 (1061)
....+ +..++.....+++++-..++..|..+.+.. +
T Consensus 252 ---------------------~l~~l----~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~-------~------------ 287 (1230)
T 1u6g_C 252 ---------------------YLEKI----IPLVVKFCNVDDDELREYCIQAFESFVRRC-------P------------ 287 (1230)
T ss_dssp ---------------------SCTTH----HHHHHHHHSSCCTTTHHHHHHHHHHHHHCT-------T------------
T ss_pred ---------------------HHHHH----HHHHHHHhcCCCHHHHHHHHHHHHHHHHHC-------h------------
Confidence 00001 122222222333444455555555554321 0
Q ss_pred CCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcC
Q 036770 392 MPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHL 471 (1061)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l 471 (1061)
..+.+++..+++.+++.|.++++.. .++|++. .+...+.. .
T Consensus 288 -------------------~~~~~~l~~li~~ll~~l~~d~~~~-~~~d~~~--~~~~~~~~-----------------~ 328 (1230)
T 1u6g_C 288 -------------------KEVYPHVSTIINICLKYLTYDPNYN-YDDEDED--ENAMDADG-----------------G 328 (1230)
T ss_dssp -------------------CCCHHHHHHHHHHHTTCCCCC----------------------------------------
T ss_pred -------------------HHHHHhHHHHHHHHHHHhCCCCCCC-Ccccccc--cccccccc-----------------c
Confidence 0135667888888888888755421 1111100 00000000 0
Q ss_pred CHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHH
Q 036770 472 DHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYV 551 (1061)
Q Consensus 472 ~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ 551 (1061)
.++.... .+... ......|....+++-+++.++.... +.-..++..+++.+........ ...+..+..++..+
T Consensus 329 -~~~~~~~-~~~~~---~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l 401 (1230)
T 1u6g_C 329 -DDDDQGS-DDEYS---DDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTVSPALISRFKERE-ENVKADVFHAYLSL 401 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTTHHHHHSTTSCSS-SHHHHHHHHHHHHH
T ss_pred -ccchhhc-ccccc---cccccCHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 0000000 00000 1123578888888999999888654 2235667777776655442211 11111111112223
Q ss_pred hccch---HHHH-------------HhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHH
Q 036770 552 VGQYP---RFLR-------------AHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFV 615 (1061)
Q Consensus 552 ig~y~---~~l~-------------~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l 615 (1061)
++.+. .|.. .-..+++.+++.+...++++++.++..+|.++..++..|+..+. +++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~--------~~l 473 (1230)
T 1u6g_C 402 LKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT--------QHI 473 (1230)
T ss_dssp HHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG--------GGH
T ss_pred HHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH--------HHH
Confidence 32221 1111 11245666677666668888899999999999999998876554 377
Q ss_pred HHHHHhHHHhhhcCCc--chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHH
Q 036770 616 SELLSGLATTVADLEP--HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVL 693 (1061)
Q Consensus 616 ~~il~~l~~~~~~l~~--~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~ 693 (1061)
.+++..+.....+-.. ..+.....+++.++...+.... ..++..++..+...+ ++ .+... ..
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~l~~llp~L~~~l--------~d----~~~~v---~~ 537 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVF-HPHVQALVPPVVACV--------GD----PFYKI---TS 537 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGG-HHHHTTTHHHHHHHH--------TC----SSHHH---HH
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHH-HhHHHHHHHHHHHHH--------cc----cchHH---HH
Confidence 8887777655443222 3455556666666655543322 346666655544322 11 12211 13
Q ss_pred HHHhHHHHHHhhhCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 036770 694 NILQTNTSVASALGT-------FFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETF 766 (1061)
Q Consensus 694 ~il~~~~~i~~~~~~-------~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~ 766 (1061)
..+.++..+++.++. .+.|+++.++|.++..+... + ..+. +|...+..+..+
T Consensus 538 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~----------d-----~~~~------vr~~a~~~lg~L 596 (1230)
T 1u6g_C 538 EALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA----------D-----IDQE------VKERAISCMGQI 596 (1230)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS----------S-----SCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc----------C-----CCHH------HHHHHHHHHHHH
Confidence 456666777777765 77888888888877654210 0 0000 111111111111
Q ss_pred HhhC----CC-----hhhhhhc-CCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHH
Q 036770 767 LDKA----ED-----QPQIGKQ-NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLK 836 (1061)
Q Consensus 767 i~~~----~~-----~~~l~~~-~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~ 836 (1061)
+... .+ +..+... .....|. ..+..++.++... ....+..++..++......+. .+.+.+|.+
T Consensus 597 ~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~-~~~~al~~i~~~~---~~~~~~~~~~~i~~~L~~~l~---~~~~~~r~~ 669 (1230)
T 1u6g_C 597 ICNLGDNLGSDLPNTLQIFLERLKNEITRL-TTVKALTLIAGSP---LKIDLRPVLGEGVPILASFLR---KNQRALKLG 669 (1230)
T ss_dssp HHHTGGGCCTHHHHHHHHHHHHTTSSSHHH-HHHHHHHHHTTCS---SCCCCHHHHHHHHHHHHHHTT---SCCHHHHHH
T ss_pred HHHhCchhhhhHHHHHHHHHHHhccchhHH-HHHHHHHHHHhCc---cccchHHHHHHHHHHHHHHHH---hCCHHHHHH
Confidence 1111 00 0000000 1111221 2344444443321 122334445444444333333 356889999
Q ss_pred HHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhc
Q 036770 837 FFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNF 893 (1061)
Q Consensus 837 ~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~ 893 (1061)
....+.+++.++...+ +.+.+..++..+.-.+...+.+....++.++..++...
T Consensus 670 a~~al~~l~~~~~~~~---~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 670 TLSALDILIKNYSDSL---TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHHHHCCTTC---CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcccccC---CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 9999999999876543 33445555544333344566777777888887776543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-09 Score=132.67 Aligned_cols=356 Identities=10% Similarity=0.072 Sum_probs=208.9
Q ss_pred ccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH--HhHHHHHHH
Q 036770 492 DWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR--AHWKFLKTV 569 (1061)
Q Consensus 492 ~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~--~~~~~L~~v 569 (1061)
..+|....++..+++.++....+ ..++.+++.+.....+ ....++...++.+|+...... ....+++.+
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~-----~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~ 409 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKN-----PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 409 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccC-----CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35798889999999999876542 2355666655544432 223333445668887665432 123478888
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCC
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAES 649 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~ 649 (1061)
++.++..+.++++.|+..|+.++.+++..+...+. ..+++..++..+-....+ ++.-+.....+++.++...+
T Consensus 410 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~------~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI------NDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS------STTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcc------cHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhh
Confidence 99999988888999999999999999998876431 124777777776654433 34445666777777775432
Q ss_pred C------------HHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHH
Q 036770 650 D------------VQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717 (1061)
Q Consensus 650 ~------------~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i 717 (1061)
+ .+.-..++..++..+...+ . .... .+.. + -...+++++.+++..|..+.+.+..+
T Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l----~----~~~~-~~~~-~--r~~~~~~l~~l~~~~~~~~~~~~~~l 550 (876)
T 1qgr_A 483 EAADVADDQEEPATYCLSSSFELIVQKLLETT----D----RPDG-HQNN-L--RSSAYESLMEIVKNSAKDCYPAVQKT 550 (876)
T ss_dssp HTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHT----T----SCSS-CSTT-H--HHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred hccccccccccccchhhhHhHHHHHHHHHHHH----h----CcCc-chhh-H--HHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 0 0000124444444333221 1 1000 0111 1 14566777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCC-C-----hh----h---hhhcCC--C
Q 036770 718 FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAE-D-----QP----Q---IGKQNV--P 782 (1061)
Q Consensus 718 ~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~-~-----~~----~---l~~~~~--~ 782 (1061)
+|.+++.+..... .. .+......+ .....++..++..+..++.... . .. . +.+... +
T Consensus 551 ~~~l~~~l~~~~~-----~~-~~~~~~~d~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 622 (876)
T 1qgr_A 551 TLVIMERLQQVLQ-----ME-SHIQSTSDR--IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSG 622 (876)
T ss_dssp HHHHHHHHHHHHT-----TT-TSCCSTTHH--HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHH-----HH-hccCChhhH--HHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCC
Confidence 8887766553200 00 000000000 0001122222233333332221 0 00 0 011010 1
Q ss_pred CcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHH
Q 036770 783 DARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKL 862 (1061)
Q Consensus 783 ~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~ 862 (1061)
.. ....+.+++.++...|..+.++++.++..+... +.+ .+++++|...+..+..++..+...+. ..+..
T Consensus 623 ~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~----l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~ 691 (876)
T 1qgr_A 623 GV-QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG----LKN--YAEYQVCLAAVGLVGDLCRALQSNII----PFCDE 691 (876)
T ss_dssp HH-HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH----HHH--CTTHHHHHHHHHHHHHHHHHHGGGGH----HHHHH
T ss_pred Cc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HcC--cchHHHHHHHHHHHHHHHHHHHHhhh----hhHHH
Confidence 11 235788999999988888888888776555533 333 25789999999999999987654332 24567
Q ss_pred HHHHHHHHhcC--CChhHHHHHHHHHHHHHHhcc
Q 036770 863 VMDSIIWAFRH--TERNIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 863 ~~~~i~~~~~~--~~~~i~~~~l~~l~~l~~~~~ 894 (1061)
++..+...+.. .++++...++..+.++....+
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhc
Confidence 77777777766 467888888998888887665
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-08 Score=121.93 Aligned_cols=354 Identities=10% Similarity=0.143 Sum_probs=210.3
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh-HHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFLKTVVN 571 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L~~vl~ 571 (1061)
.+|....++.-++|.++....+ ..++.+++.+..+..+ ....++...++.+|...+..... ..+++.+++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~-----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFH-----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4688888888899998876542 3455566655554433 12223333555888876655432 247888999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCH
Q 036770 572 KLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDV 651 (1061)
Q Consensus 572 ~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~ 651 (1061)
.++..+.++++.|+..|+.++.+++..+...... +|+..++..+-....+-++.-+.....|++.++...+..
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-------~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-------TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT-------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH-------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999999999999999999999887653322 467777776665544445666788888999888665533
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhh--HHHHHHHHHHHHHHHHHHH
Q 036770 652 QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFF--LSQISVIFLDMLNVYKMYS 729 (1061)
Q Consensus 652 ~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f--~~~~~~i~~~ll~~y~~~~ 729 (1061)
. ..++..++..+...++ .. +.. ....++.++..++...|..+ .++++.++|.+++.+...
T Consensus 477 -l-~~~l~~ll~~L~~~l~----~~--------~~~---~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l- 538 (852)
T 4fdd_A 477 -L-VPYLAYILDTLVFAFS----KY--------QHK---NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML- 538 (852)
T ss_dssp -G-GGGHHHHHHHHHHHHH----HC--------CHH---HHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHS-
T ss_pred -h-HhHHHHHHHHHHHHHH----Hh--------ChH---HHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhc-
Confidence 1 2355555554443322 11 211 22334556666666555443 223344444433322110
Q ss_pred HHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChH
Q 036770 730 ELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVP 809 (1061)
Q Consensus 730 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~ 809 (1061)
. +..+.. -.++.+++.++..+|..+.++++
T Consensus 539 -----------------------------------------~-------d~~~~~--~~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 539 -----------------------------------------K-------DEDKDL--FPLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp -----------------------------------------C-------TTCTTH--HHHHHHHHHHHHHHGGGGHHHHH
T ss_pred -----------------------------------------c-------cccHHH--HHHHHHHHHHHHHHhHhHHHHHH
Confidence 0 011111 24688888888888888777788
Q ss_pred HHHHHHHHHhHHhhh--------h-cc-CCChHhHHHHHHHHHHHHhhchhHhhcCChHHH--HHHHHHHHHHhcCCChh
Q 036770 810 RIFEAIFQCTLEMIT--------K-NF-EDYPEHRLKFFSLLRAIATHCFPALIRLSSQQL--KLVMDSIIWAFRHTERN 877 (1061)
Q Consensus 810 ~i~~~l~~~tl~~i~--------~-~~-~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~ 877 (1061)
.++..++...-..+. . .+ ....+++.....+++.+++..-..+.. .+ ..++..+...+.++.++
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~----~~~~~~~~~~l~~~l~~~~~~ 644 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ----LVARSNILTLMYQCMQDKMPE 644 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHH----HHHTCCHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHH----HhcCCcHHHHHHHHhCCCChh
Confidence 777765544333221 1 11 235678888899999998865443321 11 24566666777888899
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHH
Q 036770 878 IAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLV 941 (1061)
Q Consensus 878 i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~ 941 (1061)
+...++..+.++....+.. +..|+..+++.+...+.+. .-..-...+..+++++..+
T Consensus 645 vr~~a~~~l~~l~~~~~~~------~~~~l~~~lp~l~~~l~~~-~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 645 VRQSSFALLGDLTKACFQH------VKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQM 701 (852)
T ss_dssp HHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHTCCTT-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHHHHHHHh
Confidence 9999999999888666421 1223333444444444221 1111233455666655544
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-06 Score=103.51 Aligned_cols=371 Identities=7% Similarity=0.063 Sum_probs=212.4
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH--HHhHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL--RAHWKFLKTVV 570 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l--~~~~~~L~~vl 570 (1061)
.+|....++..+++.++..+.+ ..++.+++.+.....+ .+.+ ++...++.+|...+.. +....+++.++
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~~---~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~il 413 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCGN----HILEPVLEFVEQNITA---DNWR--NREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTC---SSHH--HHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHccH----hHHHHHHHHHHHHcCC---CChh--HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3587778889999998876542 2355566655554432 1222 2233445666654432 22245788889
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+.++..+.++++.|+..|++++.+++..+..++.+ .+++..++..+-....+ ++.-+.....+++.++...++
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~------~~~~~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP------QQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT------TTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC------HHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHhccc
Confidence 99999888889999999999999999988776532 13667777665544333 244455666777777665431
Q ss_pred ---HHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHH
Q 036770 651 ---VQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKM 727 (1061)
Q Consensus 651 ---~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~ 727 (1061)
... ..++..++..+... +.. .+ .++... ...+++++.++...+..+.+++..++|.+++.+..
T Consensus 487 ~~~~~l-~~~~~~il~~L~~~----l~~--~d----~~~~vr---~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 552 (861)
T 2bpt_A 487 ATPSPI-YNFYPALVDGLIGA----ANR--ID----NEFNAR---ASAFSALTTMVEYATDTVAETSASISTFVMDKLGQ 552 (861)
T ss_dssp SSSCGG-GGGHHHHHHHHHHH----HTC--SC----CGGGHH---HHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHH
T ss_pred ccchhh-HHHHHHHHHHHHHH----HhC--cC----cchHHH---HHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHH
Confidence 111 13444444333221 110 01 112222 23455666677777777888888888887766553
Q ss_pred HHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCC-----hh-------hhhhcCCC-CcchHHHHHHHH
Q 036770 728 YSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAED-----QP-------QIGKQNVP-DARESEVLSLFA 794 (1061)
Q Consensus 728 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~-----~~-------~l~~~~~~-~~r~~~~L~l~~ 794 (1061)
.-. ... + ....+-......++..++..+..++..... .. .+.+...+ ..| ...+.+++
T Consensus 553 ~~~-----~~~-~--i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~-~~~~~~l~ 623 (861)
T 2bpt_A 553 TMS-----VDE-N--QLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIE-DDVFYAIS 623 (861)
T ss_dssp HTT-----SCG-G--GCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTH-HHHHHHHH
T ss_pred HHh-----hhc-c--cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHH-HHHHHHHH
Confidence 200 000 0 000000000011122222223222222211 00 01111111 122 35788889
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCC
Q 036770 795 TIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHT 874 (1061)
Q Consensus 795 ~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~ 874 (1061)
.++...|..+.++++.++..++... + .+.|++|...+.++..++..+...+. ..+..++..+.-.+.++
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~l~~~l----~---~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPYLLKAL----N---QVDSPVSITAVGFIADISNSLEEDFR----RYSDAMMNVLAQMISNP 692 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHH----H---CTTSHHHHHHHHHHHHHHHHTGGGGH----HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHh----c---cccHHHHHHHHHHHHHHHHHhchhcc----chHHHHHHHHHHHhCCc
Confidence 9999988887777777777666543 2 35678999999999999887654331 24566777777777775
Q ss_pred C--hhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 036770 875 E--RNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLT 919 (1061)
Q Consensus 875 ~--~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~t 919 (1061)
+ +++...++..+..++...+. . +..|+..+++.++..+.
T Consensus 693 ~~~~~vr~~~~~~l~~l~~~~~~-~-----~~~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 693 NARRELKPAVLSVFGDIASNIGA-D-----FIPYLNDIMALCVAAQN 733 (861)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHGG-G-----GHHHHHHHHHHHHHHHT
T ss_pred cccHhhhHHHHHHHHHHHHHhhh-h-----HHHHHHHHHHHHHHHHh
Confidence 4 88989999999998877652 1 23445556666666554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.77 E-value=9.1e-06 Score=98.13 Aligned_cols=139 Identities=9% Similarity=0.035 Sum_probs=92.9
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNK 572 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~ 572 (1061)
.+|+...+++.++|.++..+.++. +.+.+++.++.+..+ ....++...+..+|...+-+...+ +++.+++.
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~llp~ 484 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVD-----HVYAIREAATSNLKKLVEKFGKEW-AHATIIPK 484 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGC-----SSHHHHHHHHHHHHHHHHHHCHHH-HHHHTHHH
T ss_pred CCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHhCchh-HHHHHHHH
Confidence 579999999999999987654331 223456666655443 223333334456666655544322 45677777
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 573 LFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 573 L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+.....+++..++..|+.++..++..|.... |...++..+.....+-.+.-|....+++|.+....+.
T Consensus 485 l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----------TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----------HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 7777777788999999999999999876532 4455555555444444566788899999999987764
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-05 Score=94.35 Aligned_cols=489 Identities=10% Similarity=0.017 Sum_probs=263.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcc---cHHHHHHHH---ccCCChHHHHHHHHHHHHHHhcccCCCCHHHH
Q 036770 17 LLDATVAAFYGTGSKEERTAADQILRDLQNNPD---MWLQVVHIL---QNSKNLNTKFFALQVLEGVIKYRWNALPVEQR 90 (1061)
Q Consensus 17 ~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~---aw~~~~~iL---~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~ 90 (1061)
.+..++..+.+..++..|..|-+.|.++-..-. .+.....++ ..+.+..+|..|+.++..... .++...
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~----~~~~~~- 161 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP----RVSSAV- 161 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT----TSCHHH-
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH----hcCHHH-
Confidence 344444445444577788889888888766321 232222222 245577888888888877544 355443
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHH
Q 036770 91 DGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKTS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 91 ~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE 168 (1061)
++.++..+.....++ ...+|...+.+++.++...-+. .++..++.+...++.. ...+...+..|..+.+.
T Consensus 162 ---~~~l~~~l~~l~~d~-----~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 162 ---KAELRQYFRNLCSDD-----TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp ---HHHHHHHHHHHHTCS-----CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 445555555444443 2457888889999888764322 2466777777766543 45556667777777664
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCC-
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPM- 247 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~- 247 (1061)
+.+ . ...+.++..+...++ ..+..++..+.++++......+.+ ...+.+++.+...+.+
T Consensus 234 ~~~--------~----------~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~ 293 (588)
T 1b3u_A 234 LPQ--------E----------DLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQNLMKDC 293 (588)
T ss_dssp SCH--------H----------HHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHHHHTCS
T ss_pred CCH--------H----------HHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCcc-cchhHHHHHHHHHhCCC
Confidence 211 0 012344555555554 355678889999998887655433 2335678888887765
Q ss_pred -ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036770 248 -PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIR 326 (1061)
Q Consensus 248 -~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ 326 (1061)
+.+|..|+.+|..++..-.+ .... ......++..+..++. +.+.......+..+..++.....
T Consensus 294 ~~~vr~~a~~~l~~~~~~~~~-~~~~--~~~~~~l~p~l~~~l~-------------d~~~~vR~~a~~~l~~l~~~~~~ 357 (588)
T 1b3u_A 294 EAEVRAAASHKVKEFCENLSA-DCRE--NVIMSQILPCIKELVS-------------DANQHVKSALASVIMGLSPILGK 357 (588)
T ss_dssp SHHHHHHHHHHHHHHHHTSCT-TTHH--HHHHHTHHHHHHHHHT-------------CSCHHHHHHHHTTGGGGHHHHCH
T ss_pred cHHHHHHHHHHHHHHHHHhCh-hhhh--hHHHHHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHHHhhH
Confidence 46899999999998874222 1110 0011112222211111 12223444444444333332100
Q ss_pred HhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhh
Q 036770 327 VLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQL 406 (1061)
Q Consensus 327 ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~ 406 (1061)
+ ......+..++.+...+++++-..++..+..+...+.
T Consensus 358 ------~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---------------------------------- 395 (588)
T 1b3u_A 358 ------D--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG---------------------------------- 395 (588)
T ss_dssp ------H--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC----------------------------------
T ss_pred ------h--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC----------------------------------
Confidence 0 0001112333344344455665556655555543210
Q ss_pred hhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhc-CCHHhHHHHHHHHHH
Q 036770 407 LQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSH-LDHEDTEKQMLKKLS 485 (1061)
Q Consensus 407 ~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~-l~~~~~~~~i~~~L~ 485 (1061)
.. .....+++.+..-+. |..-.+|. ..-.++..++. +..+.....+.+.+.
T Consensus 396 ~~------~~~~~~lp~l~~~~~----------d~~~~vr~------------~~~~~l~~l~~~~~~~~~~~~l~~~l~ 447 (588)
T 1b3u_A 396 IR------QLSQSLLPAIVELAE----------DAKWRVRL------------AIIEYMPLLAGQLGVEFFDEKLNSLCM 447 (588)
T ss_dssp HH------HHHHHHHHHHHHHHT----------CSSHHHHH------------HHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HH------HHHHHHHHHHHHHhc----------CCCchHHH------------HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 00 011222333332221 11111111 11122222211 111111122333343
Q ss_pred hhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHH
Q 036770 486 KQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKF 565 (1061)
Q Consensus 486 ~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~ 565 (1061)
..+. ..+|...++++.++|.++..+.++ .++..+++.|..+..+ ....++.+.++++|...+.+... .+
T Consensus 448 ~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~-----~~~~~R~~a~~~l~~l~~~~~~~-~~ 516 (588)
T 1b3u_A 448 AWLV--DHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGD-----PNYLHRMTTLFCINVLSEVCGQD-IT 516 (588)
T ss_dssp HGGG--CSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTC-----SCHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHhc--CCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhcCHH-HH
Confidence 3332 235777889999999998776543 2456667766655432 33344555677888888776543 37
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhh
Q 036770 566 LKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMI 645 (1061)
Q Consensus 566 L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li 645 (1061)
++.+++.++..+.++.+.|+..|+.++.++++.++..+.. ..++..+.....+-+.+-|....+|++.+-
T Consensus 517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----------~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----------SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH----------HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 7888888888888888999999999999999765443321 233344444444555666777777877654
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00041 Score=91.57 Aligned_cols=659 Identities=12% Similarity=0.115 Sum_probs=315.3
Q ss_pred CCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC----c
Q 036770 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA----R 136 (1061)
Q Consensus 61 s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~----~ 136 (1061)
+.+..+|.-+...|...+...-..+. .....+-..+++.+ .++.. ...++-..+..++.++...-|+ .
T Consensus 445 ~~~~~vr~~~~~~L~~l~~~~~~~l~-~~l~~ll~~l~~~L----~d~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~ 516 (1230)
T 1u6g_C 445 EKSVKTRQCCFNMLTELVNVLPGALT-QHIPVLVPGIIFSL----NDKSS---SSNLKIDALSCLYVILCNHSPQVFHPH 516 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHT----TCSSS---CHHHHHHHHHHHHHHHHSSCGGGGHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHchhhhH-HHHHHHHHHHHHHH----cCCCC---cchHHHHHHHHHHHHHHhCCHHHHHhH
Confidence 45678888888888887775322332 22233333333333 33211 1235556667777776544343 4
Q ss_pred cchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHH
Q 036770 137 WRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSA-SQRTDLIR 214 (1061)
Q Consensus 137 Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~-~~~~~l~~ 214 (1061)
++.+++.++..++.. ...+...+..+..+.+-+....... . ..+....+.++..+...+.. ..+++++.
T Consensus 517 l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~-~--------~~~~~~~~~ll~~ll~~l~~~d~~~~vr~ 587 (1230)
T 1u6g_C 517 VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS-S--------FDATPYIKDLFTCTIKRLKAADIDQEVKE 587 (1230)
T ss_dssp HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCC-C--------CCCHHHHHHHHHHHHHHHSCSSSCHHHHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccccc-c--------cchHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 677888888776543 2334456667776666543210000 0 01123566777777777753 35678889
Q ss_pred HHHHHHHhcccccCcchhcc--hhhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCC
Q 036770 215 ATLSTLHAFLSWIPLGYIFE--SPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPT 292 (1061)
Q Consensus 215 ~~L~~l~~~l~wi~~~~i~~--~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~ 292 (1061)
.++.|++..+...... +.. +.+++.+...+.++..|..++.++..++....+..... .+..++..+...+.
T Consensus 588 ~a~~~lg~L~~~~g~~-~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~----~~~~i~~~L~~~l~-- 660 (1230)
T 1u6g_C 588 RAISCMGQIICNLGDN-LGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRP----VLGEGVPILASFLR-- 660 (1230)
T ss_dssp HHHHHHHHHHHHTGGG-CCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHH----HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhCch-hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHH----HHHHHHHHHHHHHH--
Confidence 9999999877644322 111 57788888888888889999999999886322212222 22223333333221
Q ss_pred CChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHH
Q 036770 293 TNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELF 372 (1061)
Q Consensus 293 ~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~ 372 (1061)
+++.....+.+..+..++..+...+. .+.+...+..++.+..-+|.++...+++.|..+.+..-
T Consensus 661 -----------~~~~~~r~~a~~al~~l~~~~~~~~~-----~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~ 724 (1230)
T 1u6g_C 661 -----------KNQRALKLGTLSALDILIKNYSDSLT-----AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 (1230)
T ss_dssp -----------SCCHHHHHHHHHHHHHHHHHCCTTCC-----HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred -----------hCCHHHHHHHHHHHHHHHhcccccCC-----HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCc
Confidence 12334455555566555555422111 12222222222233233466677788888887763210
Q ss_pred HHhccCCCcccccccCCCCCCCCchhhhhhhhhhhh-hhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcc
Q 036770 373 DAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQ-RRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKD 451 (1061)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d 451 (1061)
... .+.... ..|..+..... .. ...... .+..+...+......+.... +.+.....+
T Consensus 725 ~~~---------~~~~~~---~l~~~~~~l~~--~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~-------~ll~~l~~~ 782 (1230)
T 1u6g_C 725 SSL---------SKISGS---ILNELIGLVRS--PLLQGGALS-AMLDFFQALVVTGTNNLGYM-------DLLRMLTGP 782 (1230)
T ss_dssp GGG---------GGTTTT---THHHHHHHHTC--TTCCHHHHH-HHHHHHHHHHTTCCTTCSHH-------HHHHHHSTT
T ss_pred hhH---------HHhHHh---HHHHHHHHHcC--cccchHHHH-HHHHHHHHHHhcCCCCCCHH-------HHHHHHhcc
Confidence 000 000000 00000000000 00 000001 11122222222110000000 000000000
Q ss_pred -----h--hhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCC--CChhHHhHHHH
Q 036770 452 -----N--DVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGS--MMEEQENRFLV 522 (1061)
Q Consensus 452 -----~--~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~--~~~~~e~~~l~ 522 (1061)
. .....+.....++-.++...+.... .+++.+-..+.++..+......+|+++|.++.. +.+. +
T Consensus 783 ~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~------~ 855 (1230)
T 1u6g_C 783 VYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ------L 855 (1230)
T ss_dssp TTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSC------T
T ss_pred ccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCccc------c
Confidence 0 0001122223333332211111111 122222222211111222233457788877542 2211 2
Q ss_pred HHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhc
Q 036770 523 MVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRK 602 (1061)
Q Consensus 523 ~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~ 602 (1061)
++++.+....... + ..++....+.+|... ..+ ++.++..++..+... ++.+..+..++..+...+.
T Consensus 856 ~l~~~~~~~l~~~----~-~~Vr~aAa~aLg~l~---~~~---~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~-- 921 (1230)
T 1u6g_C 856 ELKSVILEAFSSP----S-EEVKSAASYALGSIS---VGN---LPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSAS-- 921 (1230)
T ss_dssp HHHHHHHHGGGCS----C-HHHHHHHHHHHHHHH---HHT---HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSC--
T ss_pred cHHHHHHHHhCCC----C-HHHHHHHHHHhHHHh---ccC---HHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCC--
Confidence 2334444443331 2 223333445677653 223 223344455544433 5678888888888876432
Q ss_pred ccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccc
Q 036770 603 FVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDF 682 (1061)
Q Consensus 603 l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~ 682 (1061)
.....||+.+|...+....+.-+...+...-+++|.++...+. .++..+...+. +
T Consensus 922 -----~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~-----~l~p~l~~~l~------------~--- 976 (1230)
T 1u6g_C 922 -----VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE-----TLLPRLKGYLI------------S--- 976 (1230)
T ss_dssp -----STTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG-----GTHHHHTTTSS------------S---
T ss_pred -----hhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH-----HHHHHHHHHhc------------C---
Confidence 1234578888887775544433444577888899998877552 13333322111 1
Q ss_pred cCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHH
Q 036770 683 LKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKL 762 (1061)
Q Consensus 683 ~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~l 762 (1061)
.++.........++ .++...+..+.+++..+++.++
T Consensus 977 -~~~~~R~~~~~~l~---~~~~~~~~~~~~~l~~~~~~ll---------------------------------------- 1012 (1230)
T 1u6g_C 977 -GSSYARSSVVTAVK---FTISDHPQPIDPLLKNCIGDFL---------------------------------------- 1012 (1230)
T ss_dssp -SCHHHHHHHHHHTG---GGCCSSCCTHHHHHHHHSTTTH----------------------------------------
T ss_pred -CCHHHHHHHHHHHH---HHHccCchhhHHHHHHHHHHHH----------------------------------------
Confidence 12221111111111 1112222222222222222111
Q ss_pred HHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhcc-------------CC
Q 036770 763 IETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNF-------------ED 829 (1061)
Q Consensus 763 l~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~-------------~~ 829 (1061)
..+ .+..+..| -..++.++.+++.-+..+.+.++.++..++..+. +.+++ ++
T Consensus 1013 -----~~l-------~d~~~~vr-~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~--~~~~~~~~v~~gp~k~~vd~ 1077 (1230)
T 1u6g_C 1013 -----KTL-------EDPDLNVR-RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETK--VRKELIREVEMGPFKHTVDD 1077 (1230)
T ss_dssp -----HHH-------SSSSTHHH-HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTS--CCGGGEEEEEETTEEEEEET
T ss_pred -----Hhc-------CCCcHHHH-HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhc--ccHHhheeeccCCcccccCC
Confidence 111 00111111 2356777777777666666777777777765532 11111 23
Q ss_pred ChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhc
Q 036770 830 YPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNF 893 (1061)
Q Consensus 830 ~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~ 893 (1061)
.-|.|++-|+.+..++.+|+..+ .+..++..+..|++. +.++.-.|..++.++++..
T Consensus 1078 ~l~~rk~a~~~~~~ll~~~~~~i------~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~ 1134 (1230)
T 1u6g_C 1078 GLDIRKAAFECMYTLLDSCLDRL------DIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLC 1134 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSS------CHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcC
Confidence 34899999999999999986654 266788888899988 4899999999999997664
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.022 Score=65.58 Aligned_cols=366 Identities=8% Similarity=0.063 Sum_probs=181.3
Q ss_pred Cccchh---HHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH
Q 036770 135 ARWRSF---IPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRT 210 (1061)
Q Consensus 135 ~~Wp~~---i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~ 210 (1061)
..|++. ++.+++.++++ +..+...+..|+.+... ...... + ..+.. +.++..+...|....++
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~---~~~~~~----~----~~~~~--~~~i~~L~~~L~~~~~~ 79 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSK---EPNPPI----D----EVIST--PGVVARFVEFLKRKENC 79 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHS---SSSCCH----H----HHHTS--TTHHHHHHHHHTCTTCH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCCCcH----H----HHHHc--CCcHHHHHHHHCCCCCH
Confidence 478877 88888877654 45667777777765431 001111 0 11110 13556666667655478
Q ss_pred HHHHHHHHHHHhcccccC--cchhcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHH
Q 036770 211 DLIRATLSTLHAFLSWIP--LGYIFESPLLETLLKFFPM--PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQ 286 (1061)
Q Consensus 211 ~l~~~~L~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~ 286 (1061)
.+...+..++......-+ ...+.+...++.++.+|.+ +.+|..|+.+|..+..... .....+.. .+.+..+.
T Consensus 80 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~--~~~i~~L~ 155 (450)
T 2jdq_A 80 TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST--MCRDYVLD--CNILPPLL 155 (450)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHH--TTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH--HHHHHHHH--CCCHHHHH
Confidence 888899999988765321 1124456788999988874 5789999999999987421 11111110 12233332
Q ss_pred hhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHH
Q 036770 287 TILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNS 366 (1061)
Q Consensus 287 ~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~ 366 (1061)
.++.. +.+.+.....+..+..++.... +......+..++..|+.+...+|.++...+......
T Consensus 156 ~~l~~------------~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 156 QLFSK------------QNRLTMTRNAVWALSNLCRGKS-----PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHTTS------------CCCHHHHHHHHHHHHHHHCCSS-----SCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHhcC------------CCCHHHHHHHHHHHHHHhCCCC-----CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 33311 1234555665666665553210 000000111223555555555666655554433333
Q ss_pred HHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHH
Q 036770 367 FVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVR 446 (1061)
Q Consensus 367 l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~ 446 (1061)
+...- + .....+.. ..+++.++..+..++ ..++
T Consensus 219 l~~~~------------------------~----------~~~~~~~~---~~~i~~L~~ll~~~~----------~~v~ 251 (450)
T 2jdq_A 219 LSDGP------------------------N----------DKIQAVID---AGVCRRLVELLMHND----------YKVV 251 (450)
T ss_dssp HTSSS------------------------H----------HHHHHHHH---TTTHHHHHHHTTCSC----------HHHH
T ss_pred HHCCC------------------------c----------HHHHHHHH---cCcHHHHHHHHCCCc----------hhHH
Confidence 32100 0 00000100 112333444443221 1111
Q ss_pred hhhcchhhHHHHHHHHHHHHHHhcCCHHhHHH----HHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHH-
Q 036770 447 ETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK----QMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFL- 521 (1061)
Q Consensus 447 e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~----~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l- 521 (1061)
. ..-.+|..++.-+...... -+++.|-..+.. .+|.....++|++|.++..-.+. -..++
T Consensus 252 ~------------~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~ 316 (450)
T 2jdq_A 252 S------------PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQ-IQTVID 316 (450)
T ss_dssp H------------HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHH-HHHHHH
T ss_pred H------------HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 1 1122333333322211110 122333333322 36788889999999998643222 12222
Q ss_pred HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH-HHhHH-HH-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 522 VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL-RAHWK-FL-KTVVNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 522 ~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l-~~~~~-~L-~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
..+++.|+.+..+ ....++...++++++.+... ..+-. ++ ..+++.|++.+...++.|+..|+.++..++..
T Consensus 317 ~~~l~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 317 ANIFPALISILQT-----AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp TTHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2455666665543 12334444667887765431 11112 22 24777888878777899999999999999987
Q ss_pred hhh
Q 036770 599 CKR 601 (1061)
Q Consensus 599 c~~ 601 (1061)
+..
T Consensus 392 ~~~ 394 (450)
T 2jdq_A 392 GEQ 394 (450)
T ss_dssp HHH
T ss_pred chh
Confidence 764
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.61 E-value=0.059 Score=64.62 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=78.3
Q ss_pred hCCCCHHHHHHHHHHHHHHhc-CcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Q 036770 26 YGTGSKEERTAADQILRDLQN-NPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVI 101 (1061)
Q Consensus 26 y~~~~~~~r~~A~~~L~~fq~-s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l 101 (1061)
.+.++...|+.+.-++..+-+ .|+.-..+...+. .++|+.+|-.|+.+|-+.. .++-... ++..+
T Consensus 58 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~----l~~~l 126 (591)
T 2vgl_B 58 MQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEY----LCEPL 126 (591)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHH----HHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHH----HHHHH
Confidence 344467777777777777655 4554333333332 3467788888877665432 2333333 33333
Q ss_pred HHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccc--hhHHHHHHHccCC-hhHHHHHHHHHHHHHHH
Q 036770 102 VQLSSNEASFREERLYVNKLNIILVQILKHEWPARWR--SFIPDLVAAAKTS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 102 ~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp--~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE 168 (1061)
.+...++ ..+||.+.+.++..++... |+.++ .+++.+...+... +..+..++..|..++++
T Consensus 127 ~~~L~d~-----~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 127 RKCLKDE-----DPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHSSCS-----CHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCC-----ChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 3333332 4789999999999999854 88887 4888888888753 45566677777766553
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.37 Score=61.50 Aligned_cols=313 Identities=12% Similarity=0.058 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhhhc-----CChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh-cCCcchHHHH
Q 036770 564 KFLKTVVNKLFEFMHE-----THPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA-DLEPHQIHTF 637 (1061)
Q Consensus 564 ~~L~~vl~~L~~~~~~-----~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~-~l~~~~~~~l 637 (1061)
+.++.+++++-+.+.. .+...++.|..++..+++.|..... +++.++++.+..+.. +-.+.-+...
T Consensus 455 ~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~--------~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 455 YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK--------RQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh--------HHHHHHHHHHHhcCccccCHHHHHHH
Confidence 3455555555554432 4567889999999999988876442 367777775544331 1234446677
Q ss_pred HHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHH
Q 036770 638 YESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717 (1061)
Q Consensus 638 ~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i 717 (1061)
+.++|......... .+++..++..+...++ +. +....+..+ ..+|+..+....|+++.+
T Consensus 527 ~~~l~~~~~~l~~~---~~~l~~vl~~l~~~l~---------~~------v~~~A~~al---~~l~~~~~~~l~p~~~~l 585 (971)
T 2x1g_F 527 LETMGSYCNWLMEN---PAYIPPAINLLVRGLN---------SS------MSAQATLGL---KELCRDCQLQLKPYADPL 585 (971)
T ss_dssp HHHHHHTHHHHC-------CHHHHHHHHHHHHH---------SS------CHHHHHHHH---HHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHHHhC---------hH------HHHHHHHHH---HHHHHHHHHhccccHHHH
Confidence 78888776554432 2455655555444331 10 111233333 344555555556666655
Q ss_pred HHHHHHHHHH--HH-HHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCC-CC-c--chHHHH
Q 036770 718 FLDMLNVYKM--YS-ELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNV-PD-A--RESEVL 790 (1061)
Q Consensus 718 ~~~ll~~y~~--~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~-~~-~--r~~~~L 790 (1061)
+..+.++... .. +.....+...|..+...+.......+.+-+-+++..+.. +.+... .. . .....+
T Consensus 586 l~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~-------~~~~~~~~~~~~~~~~~~l 658 (971)
T 2x1g_F 586 LNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQA-------ICQADSKTPAARIRTIFRL 658 (971)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH-------HHTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCChhhHHHHHHHH
Confidence 5554444332 00 000000111111000000000001111111111111111 111110 00 1 123467
Q ss_pred HHHHHHHHhhhccCC---------CChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHH
Q 036770 791 SLFATIINKYKGAMI---------DDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLK 861 (1061)
Q Consensus 791 ~l~~~li~~~~~~~~---------~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 861 (1061)
.+++.++..++.... +.+.++.+.++..+..++. +..+.+++....+.++++++...-..+ .| .+.
T Consensus 659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~v~e~~~~~~~~~~~~~~~~~--~p--~l~ 733 (971)
T 2x1g_F 659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE-MWVEEIDVLEAACSAMKHAITNLRSSF--QP--MLQ 733 (971)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHC----CT--HHH
T ss_pred HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhhhhhc--cc--cHH
Confidence 888888877765321 2334445544444334433 234577899999999999887644433 12 467
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcc
Q 036770 862 LVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTD 920 (1061)
Q Consensus 862 ~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td 920 (1061)
.+++.+..++..++. ...+..+..++...+...........++..++..++..+..
T Consensus 734 ~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 789 (971)
T 2x1g_F 734 DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFES 789 (971)
T ss_dssp HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777766432 23667777777666542222233344455556666665543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.087 Score=67.25 Aligned_cols=156 Identities=10% Similarity=0.114 Sum_probs=101.4
Q ss_pred cchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH-----------HH-h
Q 036770 495 WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL-----------RA-H 562 (1061)
Q Consensus 495 w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l-----------~~-~ 562 (1061)
..-.-++||++|.+++.+. .+++..+++.+++...+ +..+|+...++.+.++.+-. +. -
T Consensus 472 p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-----~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l 542 (960)
T 1wa5_C 472 IILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI 542 (960)
T ss_dssp HHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT
T ss_pred ceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHHHHhcccccccccccccHHHh
Confidence 3445678999999998874 24677777777765432 23444555666666644321 11 1
Q ss_pred HHHHHHHHHHHHHhhhcC---Chh--HHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcC-----Ccc
Q 036770 563 WKFLKTVVNKLFEFMHET---HPG--VQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL-----EPH 632 (1061)
Q Consensus 563 ~~~L~~vl~~L~~~~~~~---~~~--v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l-----~~~ 632 (1061)
..|++++++.|+..+... .++ ..+.+..++.+++..++..+.+ |+..++..+..+.... +..
T Consensus 543 ~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p--------~~~~l~~~L~~~l~~~~~~~~~~~ 614 (960)
T 1wa5_C 543 SNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP--------LFPQLLAQFIEIVTIMAKNPSNPR 614 (960)
T ss_dssp TTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG--------GHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred hhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHhCCCCcH
Confidence 357899999999876553 122 4578999999999988877764 7788877666554322 223
Q ss_pred hHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHH
Q 036770 633 QIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQK 668 (1061)
Q Consensus 633 ~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~ 668 (1061)
-+..++|++|.++.+.+.+ ....+.+.++.++...
T Consensus 615 ~~~~~~e~l~~l~~~~~~~-~~~~~~~~~~p~~~~i 649 (960)
T 1wa5_C 615 FTHYTFESIGAILNYTQRQ-NLPLLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTSCGG-GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHH
Confidence 4567899999999984432 3345777777655443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.56 E-value=0.014 Score=74.67 Aligned_cols=332 Identities=11% Similarity=0.132 Sum_probs=169.6
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh-HHHHHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFLKTVVNK 572 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L~~vl~~ 572 (1061)
+..-..++||++|+.+..+... ..+++.+++.++....+ + .++...++.+.++++=.+.+ ..|++.+++.
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~-----~--~V~~~A~~al~~l~~~~~~~l~p~~~~il~~ 572 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHALGN-----P--ELSVSSVSTLKKICRECKYDLPPYAANIVAV 572 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHHTTC-----G--GGHHHHHHHHHHHHHHTGGGCTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHhCC-----c--hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445678999999999765432 36788888877764432 1 22333444555444322111 2467888888
Q ss_pred HHHhhhc--CChhHHHHHHHHHHHHHHHhh-hcccccccCCCchHHHHHHHhHHHh----hhc-CCcch---HHHHHHHH
Q 036770 573 LFEFMHE--THPGVQDMACDTFLKIVQKCK-RKFVIVQVGENEPFVSELLSGLATT----VAD-LEPHQ---IHTFYESV 641 (1061)
Q Consensus 573 L~~~~~~--~~~~v~~~A~~~f~~i~~~c~-~~l~~~~~~e~~p~l~~il~~l~~~----~~~-l~~~~---~~~l~eai 641 (1061)
++..+.. .....+..+..++..++.... ... .||+..++..+... ... .+++. ....++++
T Consensus 573 l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~--------~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 573 SQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI--------LKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH--------HHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8886653 245788889999999886442 222 24666666544432 211 22322 34677888
Q ss_pred hhhhccCCCH--------------------HHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHH
Q 036770 642 GHMIQAESDV--------------------QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTS 701 (1061)
Q Consensus 642 g~li~~~~~~--------------------~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~ 701 (1061)
+.++.++... ..-..+.+.++..+ ..+++... .+....+.+. +++.+
T Consensus 645 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~------~~~~v~e~~~---~~l~~ 711 (963)
T 2x19_B 645 SNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI----QKVLSKWL------NDAQVVEAVC---AIFEK 711 (963)
T ss_dssp HHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH----HHHHHHHT------TCHHHHHHHH---HHHHH
T ss_pred HHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH----HHHHHhcc------CchHHHHHHH---HHHHH
Confidence 8877776521 00122334443332 23333321 2444444444 45555
Q ss_pred HHhhhChhhHHHHHHHHHHHHHHHHHH-----HHHHHHhHhcCCCCc-cchhhhHHHHHHHHHHHHHHHHHHhhCCChhh
Q 036770 702 VASALGTFFLSQISVIFLDMLNVYKMY-----SELISSSISSGGPFA-SKTSYVKLLRSVKRETLKLIETFLDKAEDQPQ 775 (1061)
Q Consensus 702 i~~~~~~~f~~~~~~i~~~ll~~y~~~-----~~~i~~~~~~~g~~~-~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~ 775 (1061)
++.++|..|.|+++.+.+.++..|+.. -..+...+...|... ........+..+-..+++++. +...
T Consensus 712 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~---~~~~---- 784 (963)
T 2x19_B 712 SVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ---QGPR---- 784 (963)
T ss_dssp HHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH---HCTT----
T ss_pred HHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh---hCcc----
Confidence 667777777777777777776666641 111111112111110 010111111212111222221 1010
Q ss_pred hhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHH-HHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhch--hHh
Q 036770 776 IGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRI-FEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCF--PAL 852 (1061)
Q Consensus 776 l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i-~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~--~~l 852 (1061)
..|+.+ ..++.+++.++......+.+ ++. +..++.++...++ ..+++..+.-+.++..+++.+. ..+
T Consensus 785 ----~~pd~~-~~~f~ll~~~~~~~~~~~~~--~~~~~~~i~~~~~~~l~---~~~~~~~~~~l~~l~~l~~~~~~~~~~ 854 (963)
T 2x19_B 785 ----DHPDIV-DSFMQLLAQALKRKPDLFLC--ERLDVKAVFQCAVLALK---FPEAPTVKASCGFFTELLPRCGEVESV 854 (963)
T ss_dssp ----TCHHHH-HHHHHHHHHHHHHCGGGGGC--TTSCHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHGGGTTSSCHH
T ss_pred ----cCchHH-HHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHhcCCChHHH
Confidence 112211 35788889988777654421 222 4445555444443 3678999999999999987643 111
Q ss_pred hcCChHHHHHHHHHHHHHhc
Q 036770 853 IRLSSQQLKLVMDSIIWAFR 872 (1061)
Q Consensus 853 ~~~~~~~~~~~~~~i~~~~~ 872 (1061)
-..=.+.+..++..+..++.
T Consensus 855 ~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 855 GKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp HHHTTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 00001234555555555554
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.03 Score=64.36 Aligned_cols=310 Identities=11% Similarity=0.059 Sum_probs=157.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhccc--c-cCcchhcch-hhHHHHHhhCCC---ccchHHHHHHHHHHhcCcCCcc
Q 036770 197 HELCLYVLSASQRTDLIRATLSTLHAFLS--W-IPLGYIFES-PLLETLLKFFPM---PSYRNLTLQCLTEVGALNFGDF 269 (1061)
Q Consensus 197 ~~~~~~~L~~~~~~~l~~~~L~~l~~~l~--w-i~~~~i~~~-~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~~~~~~ 269 (1061)
+..+...+. +.++.++..++.++...++ + -+...++.. .+++.+...|.+ +.++..|+.+|..+......
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-- 98 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-- 98 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH--
Confidence 334444554 4567888899999988764 2 233444455 788988887764 46889999999999874211
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH--HHHHHHHH
Q 036770 270 YNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALL--MGLEYLIN 347 (1061)
Q Consensus 270 ~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~--~~l~~ll~ 347 (1061)
....+. -.+.+..+..++. +.+.+....-+..+..++... +.....+. .++..++.
T Consensus 99 ~~~~~~--~~~~i~~L~~lL~-------------~~~~~vr~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~L~~ 156 (450)
T 2jdq_A 99 QTRIVI--QAGAVPIFIELLS-------------SEFEDVQEQAVWALGNIAGDS-------TMCRDYVLDCNILPPLLQ 156 (450)
T ss_dssp HHHHHH--HTTHHHHHHHHTT-------------CSCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCCCHHHHHHHHc-------------CCCHHHHHHHHHHHHHHccCC-------HHHHHHHHHCCCHHHHHH
Confidence 111111 1123333333331 124455555555555554421 11111111 12355555
Q ss_pred hhcc-ChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHH
Q 036770 348 ISYV-DETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMIC 426 (1061)
Q Consensus 348 ~~~~-~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~ 426 (1061)
+... ++.++...+...+..+... ..+. ........++. .++.
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~------~~~~---------------------------~~~~~~~~~l~----~L~~ 199 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRG------KSPP---------------------------PEFAKVSPCLN----VLSW 199 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCC------SSSC---------------------------CCGGGTGGGHH----HHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCC------CCCC---------------------------CCHHHHHHHHH----HHHH
Confidence 5553 4567777777666555421 0000 00111123333 3333
Q ss_pred hhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHH----HHHHHHHhhccCCccccchhhHHH
Q 036770 427 RMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK----QMLKKLSKQLSGEDWTWNNLNTLC 502 (1061)
Q Consensus 427 km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~----~i~~~L~~~~~~~~~~w~~le~~~ 502 (1061)
-+..+ + ..++ .....+|.+++.-.++.... -+.+.|-..+. ..+|...+.++
T Consensus 200 ~l~~~---------~-~~v~------------~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~ 255 (450)
T 2jdq_A 200 LLFVS---------D-TDVL------------ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVVSPAL 255 (450)
T ss_dssp HTTCC---------C-HHHH------------HHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHHHHHHH
T ss_pred HHccC---------C-HHHH------------HHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhHHHHHH
Confidence 33211 1 1111 11223444444332211100 01222222222 34688889999
Q ss_pred HHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH-HHH-HHHHHHHHHhhhc
Q 036770 503 WAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW-KFL-KTVVNKLFEFMHE 579 (1061)
Q Consensus 503 ~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~-~~L-~~vl~~L~~~~~~ 579 (1061)
|++|.++...... ...++ ..+++.|+.+..+ +...++...++++|+.+..-..+. .++ ..+++.|+..+.+
T Consensus 256 ~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~-----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 256 RAVGNIVTGDDIQ-TQVILNCSALQSLLHLLSS-----PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT 329 (450)
T ss_dssp HHHHHHTTSCHHH-HHHHHTTTHHHHHHHHTTC-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHhhCChHH-HHHHHHCccHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 9999998764321 11122 2366666666654 222334446667777654221111 122 2456667776667
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 036770 580 THPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 580 ~~~~v~~~A~~~f~~i~~~ 598 (1061)
+++.|+..||.++..++..
T Consensus 330 ~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 330 AEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 7899999999999999975
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.019 Score=67.98 Aligned_cols=310 Identities=11% Similarity=0.037 Sum_probs=156.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhccccc---CcchhcchhhHHHHHhhCCC---ccchHHHHHHHHHHhcCcCCcchH
Q 036770 198 ELCLYVLSASQRTDLIRATLSTLHAFLSWI---PLGYIFESPLLETLLKFFPM---PSYRNLTLQCLTEVGALNFGDFYN 271 (1061)
Q Consensus 198 ~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi---~~~~i~~~~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~~~~~~~~ 271 (1061)
..+...|. +.++.+...++.++...++.- +...+++...++.++.+|.+ +.++..|+.+|..+.+... ...
T Consensus 90 ~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~--~~~ 166 (530)
T 1wa5_B 90 PQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS--AQT 166 (530)
T ss_dssp HHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--HHH
Confidence 33444454 346788889999999887642 22345667889999988864 4689999999999987421 111
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH--HHHHHHHHhh
Q 036770 272 VQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALL--MGLEYLINIS 349 (1061)
Q Consensus 272 ~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~--~~l~~ll~~~ 349 (1061)
..+.. .+.+..+..++ . +.+.+.....+..+..++... +.....+. .++..|+.+.
T Consensus 167 ~~~~~--~g~i~~Lv~lL------~-------~~~~~vr~~A~~aL~~l~~~~-------~~~~~~~~~~~~l~~L~~ll 224 (530)
T 1wa5_B 167 KVVVD--ADAVPLFIQLL------Y-------TGSVEVKEQAIWALGNVAGDS-------TDYRDYVLQCNAMEPILGLF 224 (530)
T ss_dssp HHHHH--TTCHHHHHHHH------H-------HCCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHH--CCCHHHHHHHH------c-------CCCHHHHHHHHHHHHHHhCCC-------ccchHHHHHcCcHHHHHHHh
Confidence 11100 11122221111 0 123445555555655554321 11111110 2335555555
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhC
Q 036770 350 YVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMA 429 (1061)
Q Consensus 350 ~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~ 429 (1061)
..++.++...++.....++.. . .| .... .+...+++.++.-+.
T Consensus 225 ~~~~~~v~~~a~~~L~~L~~~-------~------~~--------------------~~~~----~~~~~~l~~L~~lL~ 267 (530)
T 1wa5_B 225 NSNKPSLIRTATWTLSNLCRG-------K------KP--------------------QPDW----SVVSQALPTLAKLIY 267 (530)
T ss_dssp GSCCHHHHHHHHHHHHHHHCC-------S------SS--------------------CCCH----HHHGGGHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHhCC-------C------CC--------------------CCcH----HHHHhHHHHHHHHHc
Confidence 556666666666555554421 0 00 0000 011223334444332
Q ss_pred CCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHH----HHHHHHhhccCCccccchhhHHHHHH
Q 036770 430 KPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQ----MLKKLSKQLSGEDWTWNNLNTLCWAI 505 (1061)
Q Consensus 430 ~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~----i~~~L~~~~~~~~~~w~~le~~~~al 505 (1061)
.++ ..++ .....+|.+|+.-.++....+ +.+.|-..+. ..+|...+.++|++
T Consensus 268 ~~d----------~~v~------------~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~--~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 268 SMD----------TETL------------VDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS--HESTLVQTPALRAV 323 (530)
T ss_dssp CCC----------HHHH------------HHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHH
T ss_pred CCC----------HHHH------------HHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC--CCChhhHHHHHHHH
Confidence 111 1111 122334444443322211111 1222333332 24688889999999
Q ss_pred HhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHH-HH-HHHHHHHHHhhhcCCh
Q 036770 506 GSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWK-FL-KTVVNKLFEFMHETHP 582 (1061)
Q Consensus 506 gsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~-~L-~~vl~~L~~~~~~~~~ 582 (1061)
|.++..-.... ..++ ..+++.|+.+..+. ...++...+++++..+..-..+.. ++ ..++..|+..+.++++
T Consensus 324 ~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~-----~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 397 (530)
T 1wa5_B 324 GNIVTGNDLQT-QVVINAGVLPALRLLLSSP-----KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY 397 (530)
T ss_dssp HHHTTSCHHHH-HHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHH-HHHHHcchHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 99986533221 1222 24566666666542 233344456677776542211111 11 2356666666666788
Q ss_pred hHHHHHHHHHHHHHHHh
Q 036770 583 GVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 583 ~v~~~A~~~f~~i~~~c 599 (1061)
.++..|+.++..++..+
T Consensus 398 ~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 398 KTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999864
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.052 Score=64.12 Aligned_cols=341 Identities=11% Similarity=0.053 Sum_probs=168.4
Q ss_pred cCcHHHHHHHHHHHHhcccccC---cchhcchhhHHHHHhhCCC---ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHH
Q 036770 207 SQRTDLIRATLSTLHAFLSWIP---LGYIFESPLLETLLKFFPM---PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNV 280 (1061)
Q Consensus 207 ~~~~~l~~~~L~~l~~~l~wi~---~~~i~~~~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~ 280 (1061)
+.++.+...++.++...++.-+ ...+++...++.+..+|.+ +.++..|+.||..+.+... .....+.. .+
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~--~~~~~~~~--~g 160 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS--ENTKVVID--HG 160 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH--HHHHHHHH--TT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--HHHHHHHh--CC
Confidence 3567788888888888766432 3455667889988888763 5789999999999987321 11111111 12
Q ss_pred HHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH--HHHHHHHHhh-ccChhhHH
Q 036770 281 FMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALL--MGLEYLINIS-YVDETEVF 357 (1061)
Q Consensus 281 ~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~--~~l~~ll~~~-~~~d~ei~ 357 (1061)
.+..+..++. +.+.+.....+..+..++... +.....+. .++..|+.+. ..++.++.
T Consensus 161 ~i~~L~~lL~-------------~~~~~v~~~a~~aL~~l~~~~-------~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~ 220 (528)
T 4b8j_A 161 AVPIFVKLLG-------------SSSDDVREQAVWALGNVAGDS-------PKCRDLVLANGALLPLLAQLNEHTKLSML 220 (528)
T ss_dssp HHHHHHHHTT-------------CSCHHHHHHHHHHHHHHHHTC-------HHHHHHHHHTTCHHHHHHTCCTTCCHHHH
T ss_pred cHHHHHHHhc-------------CCCHHHHHHHHHHHHHHhCCC-------hhhHHHHHHCCcHHHHHHHHhcCCCHHHH
Confidence 3333333331 123445555555555554321 11111111 1345555555 34555665
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCcccccc
Q 036770 358 KVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIV 437 (1061)
Q Consensus 358 ~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~ 437 (1061)
..+......++.. .+. ... .....+++.++.-+..++
T Consensus 221 ~~a~~~L~~L~~~-------~~~---------------------------~~~----~~~~~~l~~L~~lL~~~~----- 257 (528)
T 4b8j_A 221 RNATWTLSNFCRG-------KPQ---------------------------PSF----EQTRPALPALARLIHSND----- 257 (528)
T ss_dssp HHHHHHHHHHHCS-------SSC---------------------------CCH----HHHTTHHHHHHHHTTCCC-----
T ss_pred HHHHHHHHHHHcC-------CCC---------------------------CcH----HHHHHHHHHHHHHHCCCC-----
Confidence 5555444444311 010 000 111233444444442221
Q ss_pred ccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHH----HHHHHHhhccCCccccchhhHHHHHHHhhhCCCC
Q 036770 438 EDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQ----MLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMM 513 (1061)
Q Consensus 438 ~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~----i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~ 513 (1061)
.+ ++ .....+|.+++.-.......+ ..+.|-..+.. .++...+.++|++|.++..-.
T Consensus 258 ----~~-v~------------~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~ 318 (528)
T 4b8j_A 258 ----EE-VL------------TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNIVTGDD 318 (528)
T ss_dssp ----HH-HH------------HHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH
T ss_pred ----HH-HH------------HHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHHHcCCH
Confidence 11 11 112334444443322211111 12233333322 356778889999999987543
Q ss_pred hhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHH-H-HHHHHHHHHhhhcCChhHHHHHHH
Q 036770 514 EEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKF-L-KTVVNKLFEFMHETHPGVQDMACD 590 (1061)
Q Consensus 514 ~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~-L-~~vl~~L~~~~~~~~~~v~~~A~~ 590 (1061)
... ..++ ..+++.|+.+..+. ....++...+++++..+..-..+-.. + ..++..|+..+...++.++..|+.
T Consensus 319 ~~~-~~~~~~~~l~~L~~lL~~~----~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 319 AQT-QCIIDHQALPCLLSLLTQN----LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp HHH-HHHHTTTHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHH-HHHHHhhhHHHHHHHHcCC----CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 221 1121 23456666655431 12334444667777765421111111 1 134566666666667899999999
Q ss_pred HHHHHHHHhh----hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccC
Q 036770 591 TFLKIVQKCK----RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAE 648 (1061)
Q Consensus 591 ~f~~i~~~c~----~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~ 648 (1061)
++..++.... ..+... ..+..++..+ ..-+.+.+....++++.++...
T Consensus 394 aL~nl~~~~~~~~~~~l~~~------~~i~~L~~lL----~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSE------GCIKPLCDLL----ICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHT------TCHHHHHHGG----GCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHC------CCHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHH
Confidence 9999997632 222210 0222233222 2234455666677777776543
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0016 Score=68.79 Aligned_cols=154 Identities=13% Similarity=0.157 Sum_probs=107.5
Q ss_pred ccchhhHHHHHHHhhhCCCC-hhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH--HHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMM-EEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW--KFLKTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~-~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~--~~L~~vl 570 (1061)
+....+++|.++|.++..+. +..+..|...+++.++..... .+..++..+.+.+..+........ .+|+.++
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~d-----kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll 148 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKE-----KKPSVIEAIRKALLTICKYYDPLASSGRNEDML 148 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHccccccCCcHHHHH
Confidence 44556888999999998776 554337888999988876653 334444434444333332221000 2478899
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhh---cccccccCCCchHH-HHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKR---KFVIVQVGENEPFV-SELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~---~l~~~~~~e~~p~l-~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
+.|+..+.+.++.++..|+.++.+++..++. .|. +++ .+++..+.....+-+..-|..-++++|.+..
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~--------~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ--------RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH--------HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999888899999999999999998773 343 366 6777777776666677788999999999998
Q ss_pred cCCCHHHHHHHHHHH
Q 036770 647 AESDVQKREEYLQRL 661 (1061)
Q Consensus 647 ~~~~~~~~~~~l~~L 661 (1061)
.+++.... .++..|
T Consensus 221 ~vG~~~~~-p~l~~L 234 (249)
T 2qk1_A 221 IFGMNTFV-KTLEHL 234 (249)
T ss_dssp HHCSGGGH-HHHHHS
T ss_pred HhCHHHHH-HHHHHH
Confidence 88875432 344443
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.02 Score=66.16 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=84.7
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH---HHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW---KFLKTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~---~~L~~vl 570 (1061)
++...+.++.++|.+.+...++....++..+++.++....+. .+...++...+.+++....+++.+. .+...++
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~---~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 219 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE---EPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 677889999999999876543333456667777776655432 1022333334456655444444322 1222345
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHH-HHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVS-ELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~-~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
+.+.+...++++.++..++.+|..++..+...+.+ ++. .++..+-....+.+..-+...++.++.+..
T Consensus 220 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET--------YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTT--------TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 55555556677899999999999999998776654 333 444433333334444556666666666554
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.11 Score=61.30 Aligned_cols=363 Identities=11% Similarity=0.092 Sum_probs=180.0
Q ss_pred ccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHH
Q 036770 136 RWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIR 214 (1061)
Q Consensus 136 ~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~ 214 (1061)
.|...++.++..++++ +......+..|+.+... ..... + ..+. -..++..+...|....++.+..
T Consensus 84 ~~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~---~~~~~----~-~~~~------~~g~i~~Lv~~L~~~~~~~v~~ 149 (530)
T 1wa5_B 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR---EHRPP----I-DVVI------QAGVVPRLVEFMRENQPEMLQL 149 (530)
T ss_dssp ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCC---SSSCS----H-HHHH------HTTCHHHHHHTTSTTSCHHHHH
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---CCCcc----H-HHHH------HCCCHHHHHHHhCCCCCHHHHH
Confidence 3666788888877764 34455566666654211 00111 1 1111 1234555556665544678888
Q ss_pred HHHHHHHhcccccC--cchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCC
Q 036770 215 ATLSTLHAFLSWIP--LGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILP 290 (1061)
Q Consensus 215 ~~L~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~ 290 (1061)
.+..++......-+ ...+.+...++.+..+|. ++.++..|+.+|..+..... .+...+.. .+.+..+..++.
T Consensus 150 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~--~~~~~~~~--~~~l~~L~~ll~ 225 (530)
T 1wa5_B 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST--DYRDYVLQ--CNAMEPILGLFN 225 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH--HHHHHHHH--TTCHHHHHHGGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc--cchHHHHH--cCcHHHHHHHhc
Confidence 99999988775322 122444566777776664 66899999999999987421 11111110 122332322221
Q ss_pred CCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHH
Q 036770 291 PTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLE 370 (1061)
Q Consensus 291 ~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~ 370 (1061)
+.+.+.....+..+..++... .+.........++..|+.+...++.++...++.....++..
T Consensus 226 -------------~~~~~v~~~a~~~L~~L~~~~-----~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 226 -------------SNKPSLIRTATWTLSNLCRGK-----KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp -------------SCCHHHHHHHHHHHHHHHCCS-----SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred -------------cCCHHHHHHHHHHHHHHhCCC-----CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 123455555555555554321 00000111223446666666666766666655444444311
Q ss_pred HHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhc
Q 036770 371 LFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMK 450 (1061)
Q Consensus 371 l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~ 450 (1061)
- + .....+.. ..+++.++..+..++ ..++.
T Consensus 288 ~------------------------~----------~~~~~~~~---~~~v~~Lv~lL~~~~----------~~v~~--- 317 (530)
T 1wa5_B 288 P------------------------Q----------EAIQAVID---VRIPKRLVELLSHES----------TLVQT--- 317 (530)
T ss_dssp C------------------------H----------HHHHHHHH---TTCHHHHHHGGGCSC----------HHHHH---
T ss_pred C------------------------H----------HHHHHHHh---cCcHHHHHHHHCCCC----------hhhHH---
Confidence 0 0 00111111 123334444443221 11111
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHhHHH----HHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHH-HHHH
Q 036770 451 DNDVLVQYKIMRETLIYLSHLDHEDTEK----QMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFL-VMVI 525 (1061)
Q Consensus 451 d~~~~~ly~~~~~~L~~l~~l~~~~~~~----~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l-~~vi 525 (1061)
..-.+|..++.-+...... -+++.|-..+.. .+|...+.++|++|.++..-. +.-..++ ..++
T Consensus 318 ---------~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l 385 (530)
T 1wa5_B 318 ---------PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAGNT-EQIQAVIDANLI 385 (530)
T ss_dssp ---------HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCH
T ss_pred ---------HHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCH
Confidence 1122233333222211111 122233333322 368888899999999986432 2112222 2355
Q ss_pred HHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH---HhHHHHH--HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhh
Q 036770 526 RDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR---AHWKFLK--TVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600 (1061)
Q Consensus 526 ~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~---~~~~~L~--~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~ 600 (1061)
+.|+.+.... + ..++...++.+++.+.... .+-.++- .++..|+..+...++.|+..|+.++..++..+.
T Consensus 386 ~~L~~lL~~~----~-~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 386 PPLVKLLEVA----E-YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHS----C-HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC----C-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 5666655431 2 2334446677777655422 1222222 367778887777789999999999999998876
Q ss_pred h
Q 036770 601 R 601 (1061)
Q Consensus 601 ~ 601 (1061)
.
T Consensus 461 ~ 461 (530)
T 1wa5_B 461 A 461 (530)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.02 E-value=0.11 Score=62.15 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=87.2
Q ss_pred HHHHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHH------------------H
Q 036770 463 ETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVM------------------V 524 (1061)
Q Consensus 463 ~~L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~------------------v 524 (1061)
.++..+..+..+..+..+++.|...+.. .++.-...++++||.++..+.+.. ..++.. .
T Consensus 337 ~al~~L~~l~~~~nv~~iv~~L~~~l~~--~d~~~r~~~v~aI~~la~~~~~~~-~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 337 EKLDIMIRLASQANIAQVLAELKEYATE--VDVDFVRKAVRAIGRCAIKVEQSA-ERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp HHHHHHHHTCCSSTHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCChhhHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhChhHH-HHHHHHHHHHHcccchHHHHHHHHH
Confidence 3444444443333344455555555432 366667778999999887764321 111111 1
Q ss_pred HHHHHH-hhhh----------hcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 036770 525 IRDLLN-LCEM----------TKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFL 593 (1061)
Q Consensus 525 i~~Ll~-l~~~----------~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~ 593 (1061)
+..++. .++. .......+.+...+.|++|+|+.++..-+ .++..++....+.++.||..++.++.
T Consensus 414 l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~----~~l~~l~~~~~~~~~~vr~~~l~a~~ 489 (591)
T 2vgl_B 414 IRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNAD----ELLESFLEGFHDESTQVQLTLLTAIV 489 (591)
T ss_dssp HHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHH----HHHHHHSTTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHH----HHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 122221 1110 00111222334558899999999986544 44445555333446889999999999
Q ss_pred HHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhh
Q 036770 594 KIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHM 644 (1061)
Q Consensus 594 ~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~l 644 (1061)
|+...+.. +..+.+..++.... ....+.+-|.+.++..+.+
T Consensus 490 Kl~~~~p~--------~~~~~i~~ll~~~~--~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 490 KLFLKKPS--------ETQELVQQVLSLAT--QDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHTTCCS--------TTHHHHHHHHHHHH--TTCCCHHHHHHHHHHHTTT
T ss_pred HHHhcCch--------HHHHHHHHHHHHhh--hcCCChHHHHHHHHHHHHH
Confidence 99865422 22234555554432 1223445566666666655
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0089 Score=62.94 Aligned_cols=196 Identities=11% Similarity=0.121 Sum_probs=118.9
Q ss_pred cccchhhHHHHHHHh-hh-CCCChhH-HhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH-Hh-H-HHH
Q 036770 493 WTWNNLNTLCWAIGS-IS-GSMMEEQ-ENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR-AH-W-KFL 566 (1061)
Q Consensus 493 ~~w~~le~~~~algs-is-~~~~~~~-e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~-~~-~-~~L 566 (1061)
.+|...-+++=+++. +. ++..-.. ..++ ..++..|...... +....++...+.++|+.++-+. .. . .|.
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~----D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQK----DANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 589999888999988 76 4321110 1111 1233433333311 1223333445669999998886 33 3 688
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
..++..+++.+.+..+.|++.|..++..++..|...... ++++.++..+......=.+..+......++.++.
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-------~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-------GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-------CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-------CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 999999999888888999999999999999988552221 1355555555444333356778888999999988
Q ss_pred cCCCH-HHHHHHH-HHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChh-hHHHHH
Q 036770 647 AESDV-QKREEYL-QRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTF-FLSQIS 715 (1061)
Q Consensus 647 ~~~~~-~~~~~~l-~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~-f~~~~~ 715 (1061)
..+.. ..-..++ ..++..+.. ++. + .++++.... ..|++.+++.+|.. +.|+++
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~----~l~----D----~~~~VR~aA---~~~l~~i~~~vG~~~~~p~l~ 232 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQ----IVN----D----TQPAIRTIG---FESFAILIKIFGMNTFVKTLE 232 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHH----HHT----C----SSHHHHHHH---HHHHHHHHHHHCSGGGHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHH----Hhc----C----CCHHHHHHH---HHHHHHHHHHhCHHHHHHHHH
Confidence 77642 2222355 555544333 221 1 244443333 34666777777763 666554
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.26 Score=57.95 Aligned_cols=356 Identities=12% Similarity=0.108 Sum_probs=179.2
Q ss_pred hHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 036770 140 FIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLS 218 (1061)
Q Consensus 140 ~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~ 218 (1061)
-++.++..+.++ +......+..|+.+... ..... ...+ . -..++..+...|....++.+...++.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~----~~~~~----~~~~----~--~~g~v~~Lv~lL~~~~~~~v~~~A~~ 140 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSI----ERSPP----IEEV----I--QSGVVPRFVQFLTREDFPQLQFEAAW 140 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTC----SSSCC----HHHH----H--HTTCHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcC----CCCch----HHHH----H--HCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 366777766654 34455556666555321 11010 0111 1 12345556666665445788889999
Q ss_pred HHHhcccccC--cchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCC
Q 036770 219 TLHAFLSWIP--LGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTN 294 (1061)
Q Consensus 219 ~l~~~l~wi~--~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~ 294 (1061)
+|......-+ ...+.+...++.++.+|. ++.++..|+.+|..+..... .....+.. .+.+..+..++.
T Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~~i~~--~g~l~~Ll~lL~---- 212 (528)
T 4b8j_A 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP--KCRDLVLA--NGALLPLLAQLN---- 212 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH--HHHHHHHH--TTCHHHHHHTCC----
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh--hhHHHHHH--CCcHHHHHHHHh----
Confidence 9988776422 123445578888888886 45789999999999986321 11111111 012222323221
Q ss_pred hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHH
Q 036770 295 IPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDA 374 (1061)
Q Consensus 295 l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~ 374 (1061)
...+.......+..+..++... +.........++..|+.+...++.++...++.....+...-
T Consensus 213 --------~~~~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--- 275 (528)
T 4b8j_A 213 --------EHTKLSMLRNATWTLSNFCRGK------PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT--- 275 (528)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHCSS------SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC---
T ss_pred --------cCCCHHHHHHHHHHHHHHHcCC------CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---
Confidence 1234456666666666554432 11111222344566777766777777666655444443110
Q ss_pred hccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhh
Q 036770 375 HNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDV 454 (1061)
Q Consensus 375 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~ 454 (1061)
+ .....+.. ..+++.++.-+..++ ..++.
T Consensus 276 ---------------------~----------~~~~~~~~---~g~v~~Lv~lL~~~~----------~~v~~------- 304 (528)
T 4b8j_A 276 ---------------------N----------DKIQAVIE---AGVCPRLVELLLHPS----------PSVLI------- 304 (528)
T ss_dssp ---------------------H----------HHHHHHHH---TTCHHHHHHHTTCSC----------HHHHH-------
T ss_pred ---------------------H----------HHHHHHHH---cCHHHHHHHHHcCCC----------hhHHH-------
Confidence 0 00000111 012333444443222 11110
Q ss_pred HHHHHHHHHHHHHHhcCCHH--------hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHH-HHHH
Q 036770 455 LVQYKIMRETLIYLSHLDHE--------DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFL-VMVI 525 (1061)
Q Consensus 455 ~~ly~~~~~~L~~l~~l~~~--------~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l-~~vi 525 (1061)
..-.+|..++.-... +.+..+.+.|. .. .++.....++|++|.++..- ++....++ ..++
T Consensus 305 -----~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~-~~~~v~~~A~~~L~nl~~~~-~~~~~~~~~~~~i 373 (528)
T 4b8j_A 305 -----PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT----QN-LKKSIKKEACWTISNITAGN-KDQIQAVINAGII 373 (528)
T ss_dssp -----HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH----SC-CCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTCH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc----CC-CcHHHHHHHHHHHHHHHCCC-HHHHHHHHHCCCH
Confidence 112223333322221 22333333333 11 15666778899999998742 22111111 2455
Q ss_pred HHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH-HHhHHHH--HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhh
Q 036770 526 RDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL-RAHWKFL--KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKR 601 (1061)
Q Consensus 526 ~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l-~~~~~~L--~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~ 601 (1061)
+.|+.+.... + ..++...+++++..+..- ..+-.++ ..++..|+..+...++.++..|+.++..+++....
T Consensus 374 ~~L~~lL~~~----~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 374 GPLVNLLQTA----E-FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHHHHS----C-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC----C-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666665542 2 223333566777665431 1122223 24677888888878899999999999999986643
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=1.8 Score=51.86 Aligned_cols=175 Identities=11% Similarity=0.098 Sum_probs=102.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhc-CcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 036770 20 ATVAAFYGTGSKEERTAADQILRDLQN-NPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKN 95 (1061)
Q Consensus 20 ~av~~ly~~~~~~~r~~A~~~L~~fq~-s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~ 95 (1061)
.++..+.+ ++-+.|+-+.-++..+-+ .++.-..+..-|. .++|+.+|-.|+.+|-+... ++-- .
T Consensus 74 ~vik~~~s-~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~~~~----~ 141 (618)
T 1w63_A 74 ECLKLIAS-QKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-------SEMC----R 141 (618)
T ss_dssp HHHHHHHS-SSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------HHHH----H
T ss_pred HHHHHHcC-CchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------HHHH----H
Confidence 33443333 366677777777777665 4553333333332 46788999999999977542 2222 2
Q ss_pred HHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCc
Q 036770 96 YISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSR 174 (1061)
Q Consensus 96 ~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~ 174 (1061)
.++..+.+...++ +.+||++.+.++..++... |+.-+.+++.+...+... +.....++..|..+.+.
T Consensus 142 ~l~~~l~~~L~~~-----~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~------ 209 (618)
T 1w63_A 142 DLAGEVEKLLKTS-----NSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER------ 209 (618)
T ss_dssp HHHHHHHHHHHSC-----CHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS------
T ss_pred HHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh------
Confidence 3444444433332 3689999999999999864 765556666666665543 45555566666654321
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cCcHHHHHHHHHHHHhccc
Q 036770 175 GEMTQQKIKELKQSLNSEFQLIHELCLYVLSA----------SQRTDLIRATLSTLHAFLS 225 (1061)
Q Consensus 175 ~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~----------~~~~~l~~~~L~~l~~~l~ 225 (1061)
. . +....+....+.++..+.+++.. ..++-+...++++++.+..
T Consensus 210 -~--~----~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 210 -S--P----DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp -H--H----HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred -C--h----HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 0 0 11223334566666666665542 1255666778888887764
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=96.66 E-value=0.2 Score=63.61 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=80.8
Q ss_pred hHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHh----HHHHhccchHHHHH-----hHHHHHHH
Q 036770 499 NTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASN----IMYVVGQYPRFLRA-----HWKFLKTV 569 (1061)
Q Consensus 499 e~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~----i~~~ig~y~~~l~~-----~~~~L~~v 569 (1061)
.++||.+|+.++-+.. ..++++.++..|+.-... +...++.. ++.+.....+-+.. ...|++.+
T Consensus 518 ~t~~~~lGry~~wl~~--~~~~L~~vl~~L~~~l~~-----~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~i 590 (1023)
T 4hat_C 518 SDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHE-----THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1023)
T ss_dssp HHHHHHHHTCHHHHHH--CHHHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Confidence 4688999999886532 356888999988774421 11222332 33333333333321 12377777
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHH----hHHHhhh----c---C-C---cchH
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLS----GLATTVA----D---L-E---PHQI 634 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~----~l~~~~~----~---l-~---~~~~ 634 (1061)
++.+......-.+.-...+..++..+++.....-.. ..+++.++. .++.+.. + + + .+..
T Consensus 591 l~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~------~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l 664 (1023)
T 4hat_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISEERSVAER------NRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII 664 (1023)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHH------HHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhH------HHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHH
Confidence 777777544334455567778888877754322111 113333322 2222221 1 1 1 1234
Q ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHH
Q 036770 635 HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQK 668 (1061)
Q Consensus 635 ~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~ 668 (1061)
..++++.+.+.++++..- ..++..++..+.+-
T Consensus 665 ~~il~~~~~v~~~lg~~f--~~~~~~i~~~~l~~ 696 (1023)
T 4hat_C 665 ANIIKTNVAVCTSMGADF--YPQLGHIYYNMLQL 696 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHH--HHHHHHHHHHHHHH
Confidence 567888888877776532 23455555444443
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.015 Score=60.81 Aligned_cols=155 Identities=9% Similarity=0.078 Sum_probs=97.0
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhh-hhcCCcchHHHHHhHHHHhccchHHHHHh-HHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE-MTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFLKTVV 570 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~-~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L~~vl 570 (1061)
.+|.....++.+++.+.+....-.... +.++++.|..+.. . ....++...+.++|....-+... ..+.+.++
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd-----~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il 100 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKD-----SNVVLVAMAGKCLALLAKGLAKRFSNYASACV 100 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 589999998999988765411100111 2345555554442 2 22233333556888777655432 35788899
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+.+++.+.++++.|++.|+.++..++..+. +..++..+.....+-++..+......++.++...+.
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYASTS--------------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 999998888899999999999999987431 234444444333344567788999999998877643
Q ss_pred HHHHHHHHHHHhhchHH
Q 036770 651 VQKREEYLQRLMLLPNQ 667 (1061)
Q Consensus 651 ~~~~~~~l~~Ll~~~~~ 667 (1061)
...-..++..++..+..
T Consensus 167 ~~~~~~~l~~l~p~l~~ 183 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVK 183 (242)
T ss_dssp GGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 21113466666665444
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=96.60 E-value=0.36 Score=62.16 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=60.0
Q ss_pred HHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH---------HHHHHHH
Q 036770 500 TLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW---------KFLKTVV 570 (1061)
Q Consensus 500 ~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~---------~~L~~vl 570 (1061)
++||++|+.+.-+.. ...+++.+++.++....+ ....+++..++.+.++++=.+.+- .|++.++
T Consensus 519 ~~~~~lgry~~~~~~--~~~~l~~vl~~ll~~l~~-----~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il 591 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHE-----THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII 591 (1049)
T ss_dssp HHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHH
Confidence 589999999865543 246889999988875432 224445556667766665433321 5688888
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHh
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c 599 (1061)
+.+...+....+.-......++..++...
T Consensus 592 ~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 592 RDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 88887665433444456667777777544
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=96.60 E-value=0.84 Score=53.61 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=61.6
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KT 568 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~ 568 (1061)
.++.....++.++|.++..-... ...+ ..+++.|..+..+ ++..++...+|++++.+..-..+...+ ..
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~~--~~~i~~~g~l~~L~~LL~~-----~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g 377 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDEQ--TQKVIDAGALAVFPSLLTN-----PKTNIQKEATWTMSNITAGRQDQIQQVVNHG 377 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHH--HHHHHHTTGGGGHHHHTTC-----SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHccchHH--HHHHhhcccHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 35666778899999997643221 2211 2244556665543 233344446677776654322222222 23
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHHHhh
Q 036770 569 VVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600 (1061)
Q Consensus 569 vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~ 600 (1061)
++..|+..+.++++.++..|+.++..++..+.
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 56667776777788999999999999997653
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=96.42 E-value=1.4 Score=51.30 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=77.3
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTV 569 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~v 569 (1061)
+......+++++|.++..-... ...+ ..+++.|..+..+ .+..++...+|++++.+..-..+...+ ..+
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~--~~~i~~~g~l~~L~~LL~~-----~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~ 359 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQ--TQKVIDAGALAVFPSLLTN-----PKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH--HHHHHHTTGGGGCC-CTTC-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred ChhhhhHHHHHHHHhhcCCHHH--HHHHhhccchHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCC
Confidence 5566778899999987543211 2221 1234444444433 233344446677776654322222222 235
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhhh----cccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhh
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCKR----KFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMI 645 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~----~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li 645 (1061)
+..|+..+...++.++..|+.++..++..+.. .++.. | .+..+++.+ ..-+.+-+....+++..++
T Consensus 360 i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~--g----~i~~L~~LL----~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC--G----IIEPLMNLL----SAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT--T----CHHHHHHGG----GCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC--C----CHHHHHHHh----cCCCHHHHHHHHHHHHHHH
Confidence 66777777777889999999999999976542 23221 1 233333333 2334555667778887777
Q ss_pred cc
Q 036770 646 QA 647 (1061)
Q Consensus 646 ~~ 647 (1061)
..
T Consensus 430 ~~ 431 (510)
T 3ul1_B 430 QA 431 (510)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.33 Score=61.45 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhhcc------CCCChHHHHHHHHHHhHHhhhhcc--CCChHhHHHHHHHHHHHHhhchhHhhcCChHHH
Q 036770 789 VLSLFATIINKYKGA------MIDDVPRIFEAIFQCTLEMITKNF--EDYPEHRLKFFSLLRAIATHCFPALIRLSSQQL 860 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~------~~~~l~~i~~~l~~~tl~~i~~~~--~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~ 860 (1061)
.|.+++.+-+..... ..+.++.++..+. .+++.+. ..+|-+|..++.++.+..+. +...++.+
T Consensus 463 aL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~----~ll~s~i~~~~hp~V~~~~~~~l~rys~~-----~~~~~~~l 533 (980)
T 3ibv_A 463 ALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILA----LVTTSQVCRHPHPLVQLLYMEILVRYASF-----FDYESAAI 533 (980)
T ss_dssp HHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHH----HHHHSSTTTCCCHHHHHHHHHHHHHTGGG-----GGTCCTTH
T ss_pred HHHHHHHHHhhccccccccCcccchhHHHHHHHH----HHHhCCCCCCCCHHHHHHHHHHHHHHHHH-----HhcCchhH
Confidence 567766665544331 2245666654433 3333222 46899999999999986553 22345688
Q ss_pred HHHHHHHHH--HhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 861 KLVMDSIIW--AFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 861 ~~~~~~i~~--~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
..+++.+.. |+.|++..+...|...+.++.+..+.
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 999999998 99999999999999999999988764
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=95.36 E-value=4.2 Score=47.54 Aligned_cols=69 Identities=6% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCc--chhcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 196 IHELCLYVLSASQRTDLIRATLSTLHAFLSWIPL--GYIFESPLLETLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 196 I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~--~~i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
++..+...|....++.+...+..||.....--+- ..+++...++.+..+|.+ +++++.|+.+|..|+..
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 5556666776666788888888888877653221 235667788889888875 46889999999999863
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.055 Score=56.53 Aligned_cols=139 Identities=11% Similarity=0.162 Sum_probs=97.5
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 573 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L 573 (1061)
+.....+++-++|.++..+.+.. ..++..+++.++....+ .+..++......+.....-. .++.+++.+
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d-----~~~~vr~~a~~aL~~~~~~~-----~~~~ll~~l 138 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKE-----KKPNVVTALREAIDAIYAST-----SLEAQQESI 138 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHTTS-----CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHcC-----CHHHHHHHH
Confidence 45566788999999997765443 56888889988876653 33444443444443322211 145677778
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHhhhc-ccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 574 FEFMHETHPGVQDMACDTFLKIVQKCKRK-FVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 574 ~~~~~~~~~~v~~~A~~~f~~i~~~c~~~-l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+..+.+.++.++..++..+..+...+... +. .+++..++..+.....+-..+-|...++++|.+...+++
T Consensus 139 ~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~-------~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 139 VESLSNKNPSVKSETALFIARALTRTQPTALN-------KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC-------HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc-------HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 88887788999999999999987665322 22 247888888887777666677788999999999988874
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=95.17 E-value=5.6 Score=46.21 Aligned_cols=121 Identities=11% Similarity=0.148 Sum_probs=68.8
Q ss_pred HHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036770 127 QILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAILK-LLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVL 204 (1061)
Q Consensus 127 ~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~-~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L 204 (1061)
.+....-..+|. ++++++.+.++. .....+..-++ .|+.| + ..+ . +.+.+ .-++..+...|
T Consensus 47 ~~~~~~~~~~~~--i~~~v~~l~s~d~~~q~~a~~~~rklls~e-----~-~pp---i----~~ii~--~G~ip~LV~lL 109 (510)
T 3ul1_B 47 DIGSNQGTVNWS--VEDIVKGINSNNLESQLQATQAARKLLSRE-----K-QPP---I----DNIIR--AGLIPKFVSFL 109 (510)
T ss_dssp ------CCSSCC--HHHHHHHHTSSCHHHHHHHHHHHHHHHTCS-----S-CCC---H----HHHHH--TTHHHHHHHHT
T ss_pred hhccccchhhhh--HHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-----C-Cch---H----HHHHH--CCCHHHHHHHH
Confidence 333333334564 899999888763 33222333333 34332 0 111 1 11111 12455566667
Q ss_pred hhcCcHHHHHHHHHHHHhcccccC--cchhcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 205 SASQRTDLIRATLSTLHAFLSWIP--LGYIFESPLLETLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 205 ~~~~~~~l~~~~L~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
....++.+...+..||....+--+ ...+++...++.+..+|.+ +++++.|+.+|..++..
T Consensus 110 ~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 110 GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp TCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 666677888888888877654222 1235566788889988875 47899999999999863
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=95.13 E-value=9 Score=47.13 Aligned_cols=219 Identities=13% Similarity=0.079 Sum_probs=122.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcC----------cccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCH
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNN----------PDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPV 87 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s----------~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~ 87 (1061)
+..++..+.+ .++..|..|-..|..+-.. +++......+|..+.++.+|..|+..|.+ +... .
T Consensus 152 ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~-----~ 224 (780)
T 2z6g_A 152 IPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-LSHH-----R 224 (780)
T ss_dssp HHHHHHHHHC-SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTS-----H
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCC-----c
Confidence 4444555544 4777899999998887763 35566666777666689999999999998 4322 2
Q ss_pred HHHHH-HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCcc-----chhHHHHHHHccCC-hhHHHHHHH
Q 036770 88 EQRDG-MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARW-----RSFIPDLVAAAKTS-ETICENCMA 160 (1061)
Q Consensus 88 e~~~~-lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~W-----p~~i~~l~~~~~~~-~~~~~~~L~ 160 (1061)
+.+.. .+...+..+......+. ..++...+.+|..|.... +... ...++.++..+..+ .......+.
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~~~~-----~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~ 298 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLGSPV-----DSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 298 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 22332 23345555555543332 346677778888887653 2211 35677888888754 344455556
Q ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccC-cchhcchhhHH
Q 036770 161 ILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIP-LGYIFESPLLE 239 (1061)
Q Consensus 161 iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~-~~~i~~~~ll~ 239 (1061)
.|..++.. + . ..| .. +.. ...+..+..++...........+..++......-. ...+.+...++
T Consensus 299 aL~~La~~--~---~---e~~-~~----i~~--~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~ 363 (780)
T 2z6g_A 299 CLQILAYG--N---Q---ESK-LI----ILA--SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 363 (780)
T ss_dssp HHHHHHTT--C---H---HHH-HH----HHT--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHH
T ss_pred HHHHHhcC--C---h---HHH-HH----HHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHH
Confidence 66655421 0 0 011 11 111 12234445556554444444444444443332111 12344456677
Q ss_pred HHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 240 TLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 240 ~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
.+..++.+ +.++..|+.+|..+...
T Consensus 364 ~Ll~lL~~~~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 364 ALGLHLTDPSQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence 77777764 34666777777777653
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=94.98 E-value=1.1 Score=46.12 Aligned_cols=221 Identities=15% Similarity=0.137 Sum_probs=140.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcc----------cHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCC
Q 036770 17 LLDATVAAFYGTGSKEERTAADQILRDLQNNPD----------MWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALP 86 (1061)
Q Consensus 17 ~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~----------aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~ 86 (1061)
.+..++..+.++ +++.|..|-..|..+-.... +......+|. +.++.++..|+..|.+.... +
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~-----~ 75 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASG-----P 75 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTS-----C
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcC-----C
Confidence 455666666555 57788888888888865442 4555556664 45789999999999987542 2
Q ss_pred HHHHHHH-HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCcc-----chhHHHHHHHccCC-hhHHHHHH
Q 036770 87 VEQRDGM-KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARW-----RSFIPDLVAAAKTS-ETICENCM 159 (1061)
Q Consensus 87 ~e~~~~l-r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~W-----p~~i~~l~~~~~~~-~~~~~~~L 159 (1061)
++.+..+ +...+..+.....++ ..-++...+.++..+.... |... ...++.++..+..+ +......+
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~-----~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~ 149 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 149 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-----SHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 4444433 334566666554433 2456777778888777432 1111 25678888888754 45667778
Q ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCc--chhcchhh
Q 036770 160 AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPL--GYIFESPL 237 (1061)
Q Consensus 160 ~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~--~~i~~~~l 237 (1061)
..|..++.. . ..++..+.+ ..++..+...+. ..++.+...++.++......-+- ..+.+...
T Consensus 150 ~~L~~l~~~----~-----~~~~~~~~~------~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~ 213 (252)
T 4hxt_A 150 RALANIASG----P-----DEAIKAIVD------AGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGG 213 (252)
T ss_dssp HHHHHHTTS----C-----HHHHHHHHH------TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTH
T ss_pred HHHHHHHcC----C-----HHHHHHHHH------CcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 888777542 0 111222211 234555556665 45678999999999988763221 23445678
Q ss_pred HHHHHhhCC--CccchHHHHHHHHHHhcCcC
Q 036770 238 LETLLKFFP--MPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 238 l~~l~~~L~--~~~~~~~a~~cL~ei~~~~~ 266 (1061)
++.+..++. ++.++..|+.+|..+.....
T Consensus 214 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 214 VEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 888888776 45788999999999987543
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=94.90 E-value=9.7 Score=48.23 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=79.6
Q ss_pred hHHHHhccchHHHH--HhHHHHHHHHHHHHHhhhcC-----ChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHH
Q 036770 547 NIMYVVGQYPRFLR--AHWKFLKTVVNKLFEFMHET-----HPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELL 619 (1061)
Q Consensus 547 ~i~~~ig~y~~~l~--~~~~~L~~vl~~L~~~~~~~-----~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il 619 (1061)
+.+|.+|.-+.=+. ....+|+.+++.|+.....+ .+.++...|+++.+.++=.+.| ..|+..++
T Consensus 498 a~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h---------~~~L~~vl 568 (1073)
T 3gjx_A 498 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH---------WKFLKTVV 568 (1073)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC---------HHHHHHHH
T ss_pred HHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC---------HHHHHHHH
Confidence 36777776643322 23469999999999844222 2346666677777766544432 13777777
Q ss_pred HhHHHhhhcCCcchHHHHHHHHhhhhccCCCH------HHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHH
Q 036770 620 SGLATTVADLEPHQIHTFYESVGHMIQAESDV------QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVL 693 (1061)
Q Consensus 620 ~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~------~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~ 693 (1061)
+.+-.....-.+.-+.....|+..+.+.-+.. .....+++.++..+.+ +... .+++ .+.
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~----~~~~--------l~~~---~~~ 633 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT----IICD--------LQPQ---QVH 633 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHH----HHTT--------CCHH---HHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH----HHHh--------cCHH---HHH
Confidence 76654433222222333334444443332210 0012355555554332 2111 1222 356
Q ss_pred HHHhHHHHHHhhhChhh--HHHHHHHHHHHHHHHHHH
Q 036770 694 NILQTNTSVASALGTFF--LSQISVIFLDMLNVYKMY 728 (1061)
Q Consensus 694 ~il~~~~~i~~~~~~~f--~~~~~~i~~~ll~~y~~~ 728 (1061)
.+.++.+.+..+.+..- ...++.+++...+.++..
T Consensus 634 ~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l 670 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSI 670 (1073)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 66667777777776432 333455555555555443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.26 Score=49.73 Aligned_cols=139 Identities=9% Similarity=0.084 Sum_probs=81.6
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTV 569 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~v 569 (1061)
.++.....++|+++.++..-.+.. ..++ ..+++.|+++..+. + ..++...++++++.+..-..+...+ ...
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~lL~~~----~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGNEQI-QAVIDAGALPALVQLLSSP----N-EQILQEALWALSNIASGGNEQIQAVIDAGA 97 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHHTTCS----C-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHH-HHHHHcCCHHHHHHHHcCC----C-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence 357777889999999985432221 1221 23566677666542 2 2333445667776553222222212 235
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhh---hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCK---RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~---~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
++.|+..+.++++.++..|+.++..++.... ..+... ..+..++..+. .-+.+.+.....+++.+..
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll~----~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------GALPALVQLLS----SPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHTT----CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc------CcHHHHHHHHc----CCCHHHHHHHHHHHHHHHc
Confidence 7778888888889999999999999995322 222221 13444444332 2245567777888888876
Q ss_pred c
Q 036770 647 A 647 (1061)
Q Consensus 647 ~ 647 (1061)
.
T Consensus 168 ~ 168 (210)
T 4db6_A 168 G 168 (210)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.43 Score=48.05 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=61.1
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHH-HH-HHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWK-FL-KTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~-~L-~~vl 570 (1061)
++...+.++|++|.++..-.+. ...++ ...++.|+.+..+. ...++...++++++.+.--..+.+ .+ ..++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHH-HHHHHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcH
Confidence 5677888999999998543221 11121 22566677666542 233344456677766532222111 11 2367
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
..|+..+.++++.++..|+.++..+|..
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7778877777899999999999999954
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.81 Score=49.07 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=84.1
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH-HHHH-HHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW-KFLK-TVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~-~~L~-~vl 570 (1061)
+-...+.++|++|.+++.-. ...+.++ ...++.|+.+.... ++..++...+|.++..++-..... .+.. ..+
T Consensus 95 ~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~LL~~~----~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi 169 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRLLDRD----ACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169 (296)
T ss_dssp SHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 44667789999999997632 2112222 13667777766531 223344557778876543222212 2222 356
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHH---hhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhcc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQK---CKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~---c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~ 647 (1061)
..|...++++++.++..||.++..++.. .+..++.. ..+..++..+. .-+.+-+.....+++.++..
T Consensus 170 ~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~------g~i~~Lv~LL~----~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 170 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM------GMVQQLVALVR----TEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT------THHHHHHHHHT----SCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc------CCHHHHHHHHc----CCChhHHHHHHHHHHHHHhC
Confidence 6667777777899999999999999975 22333321 13444444332 23556688888999998876
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.27 E-value=12 Score=44.74 Aligned_cols=221 Identities=11% Similarity=0.041 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcc----------cHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCC
Q 036770 16 ALLDATVAAFYGTGSKEERTAADQILRDLQNNPD----------MWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNAL 85 (1061)
Q Consensus 16 ~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~----------aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l 85 (1061)
..+..++..+.++ ++..|..|-..|.++-.... ........|..+.++.++..|+.+|.+...
T Consensus 14 g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~------ 86 (644)
T 2z6h_A 14 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH------ 86 (644)
T ss_dssp TTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT------
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc------
Confidence 3455566655544 77889999999998876543 344445566655688999999999986433
Q ss_pred CHHHHHHHHH-HHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCcc-----chhHHHHHHHccCC-hhHHHHH
Q 036770 86 PVEQRDGMKN-YISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARW-----RSFIPDLVAAAKTS-ETICENC 158 (1061)
Q Consensus 86 ~~e~~~~lr~-~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~W-----p~~i~~l~~~~~~~-~~~~~~~ 158 (1061)
.++.+..+.+ ..+..+......+. ..++...+.+|..+.... +..- ...++.++..++.+ .......
T Consensus 87 ~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a 160 (644)
T 2z6h_A 87 HREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160 (644)
T ss_dssp SHHHHHHHHTTTHHHHHHHHTTCSS-----HHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence 2334443332 34555555433322 346777888888888764 2211 45778888888764 3333444
Q ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccC-cchhcchhh
Q 036770 159 MAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIP-LGYIFESPL 237 (1061)
Q Consensus 159 L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~-~~~i~~~~l 237 (1061)
+.+|..|+.. + . .. +..+.+ ...+..+..++.......+...++.++......-. ...+.+...
T Consensus 161 ~~~L~~La~~--~---~---~~-~~~i~~------~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~ 225 (644)
T 2z6h_A 161 TDCLQILAYG--N---Q---ES-KLIILA------SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 225 (644)
T ss_dssp HHHHHHHHTT--C---H---HH-HHHHHH------TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTH
T ss_pred HHHHHHHHhc--C---c---HH-HHHHHH------cCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC
Confidence 5566666531 0 0 11 111111 12345556666665556666677777665443211 123455667
Q ss_pred HHHHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 238 LETLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 238 l~~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
++.+..++.+ +.++..++.+|..+...
T Consensus 226 l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 8888877764 46778888888887653
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=93.61 E-value=1.6 Score=44.90 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=79.9
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHH-HH-HHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWK-FL-KTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~-~L-~~vl 570 (1061)
+....+.++|+++.++..-.+. ...+. ...++.|+.+..+. + ..++...+++++..+..-..+.. .. ..++
T Consensus 57 ~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~ll~~~----~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 130 (252)
T 4hxt_A 57 DSEVQKEAARALANIASGPDEA-IKAIVDAGGVEVLVKLLTST----D-SEVQKEAARALANIASGPDEAIKAIVDAGGV 130 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCS----S-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHHHHHHHcCC----C-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 4666788999999998753222 12222 23566666666531 2 23333355666665532121111 11 2467
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHh---hhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhcc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKC---KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c---~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~ 647 (1061)
..|+..+.++++.++..|+.++..++... +..+... ..+..++..+ ..-++.-+.....+++.+...
T Consensus 131 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 131 EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA------GGVEVLVKLL----TSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHT----TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------cCHHHHHHHH----CCCCHHHHHHHHHHHHHHHcC
Confidence 78888888888999999999999998632 2223221 1333333333 233455577778888887753
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.65 Score=48.22 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=62.6
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTV 569 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~v 569 (1061)
.++...+.++|+++.++..-... ...++ ..+++.|+.+..+. + ..++...++++++.+..-..+...+ ..+
T Consensus 108 ~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~----~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 181 (252)
T 4db8_A 108 PNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSP----N-EQILQEALWALSNIASGGNEQIQAVIDAGA 181 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGCS----C-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHHHHHHHhCC----C-HHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 35777889999999998764321 12222 23667777766542 2 2333335567776554322222222 346
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
+..|+..+.++++.++..|+.++..+|.
T Consensus 182 i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 182 LPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 7778887877789999999999999984
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=92.95 E-value=19 Score=42.80 Aligned_cols=173 Identities=11% Similarity=0.120 Sum_probs=102.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNN-PDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGM 93 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s-~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l 93 (1061)
+-.++..+ ++++.+.|+-+.-++..+-+. ++--..+...+. .++|+.+|-.|+.+|-+... ++-
T Consensus 76 ~~~vvkl~-~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~---- 143 (621)
T 2vgl_A 76 HMEAVNLL-SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------REM---- 143 (621)
T ss_dssp HHHHHHGG-GCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHH----
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHH----
Confidence 33444433 344777888888888887664 554444444442 35788999999999987532 232
Q ss_pred HHHHHHHHHHhh--cCchhhhhhHHHHHHHHHHHHHHHHhhcCCccc--hhHHHHHHHccC-ChhHHHHHHHHHHHHHHH
Q 036770 94 KNYISEVIVQLS--SNEASFREERLYVNKLNIILVQILKHEWPARWR--SFIPDLVAAAKT-SETICENCMAILKLLSEE 168 (1061)
Q Consensus 94 r~~ll~~l~~~~--~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp--~~i~~l~~~~~~-~~~~~~~~L~iL~~l~EE 168 (1061)
-+.++..+.+.. .+. ..+||+|.+.++..++.. .|+.-+ ++++.+...+.. ++....+++..|..++++
T Consensus 144 ~~~l~~~v~~~l~~~d~-----~~~VRK~A~~al~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDT-----MDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHTTHHHHHHHCSSS-----CHHHHHHHHHHHHHHHHH-CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHHh-ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 234444444432 332 478999999999999985 476555 667777776654 344555566666655543
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------cHHHHHHHHHHHHhcc
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ------------RTDLIRATLSTLHAFL 224 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~------------~~~l~~~~L~~l~~~l 224 (1061)
- . +.+...++.++..+..++.... ++=+....|+.+..|.
T Consensus 218 ~------------~----~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 218 N------------P----EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp C------------H----HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred C------------h----HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 0 0 0122345566666666654321 3445556666666554
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=92.73 E-value=1.6 Score=45.24 Aligned_cols=138 Identities=10% Similarity=0.120 Sum_probs=81.5
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh-HHHH-HHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFL-KTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L-~~vl 570 (1061)
+....+.++|+++.++..-.+. ...++ ...++.|+.+..+. + ..++...+++++..+..-... .... ..++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~----~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (252)
T 4db8_A 67 NEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSP----N-EQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGCS----C-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHH-HHHHHHcCCHHHHHHHHcCC----C-HHHHHHHHHHHHHhhcCCchHHHHHHHCCCH
Confidence 3566778999999998753322 12222 22667777776541 2 233344556776654433222 1222 2367
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHh---hhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhcc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKC---KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c---~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~ 647 (1061)
+.|+..+.++++.++..|+.++..++... +..+... ..+..++..+. .-+..-+.....+++.+...
T Consensus 141 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------GALPALVQLLS----SPNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------TCHHHHHHGGG----CSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC------CCHHHHHHHHC----CCCHHHHHHHHHHHHHHhcC
Confidence 88888888888999999999999999632 2223221 13444444432 22455577777788887643
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.43 E-value=6 Score=38.18 Aligned_cols=121 Identities=14% Similarity=0.323 Sum_probs=79.5
Q ss_pred HHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcC
Q 036770 501 LCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHET 580 (1061)
Q Consensus 501 ~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~ 580 (1061)
.-|++|.|+.+-+ ..++.++..++.+.+++. ...|. .+.++..-+| .+|+.|..+.+.+|+..+++.
T Consensus 127 ~~yaLeeIaranP-----~l~~~v~rdi~smltskd-~~Dkl-~aLnFi~alG------en~~~yv~PfLprL~aLL~D~ 193 (253)
T 2db0_A 127 VSYALEEIAKANP-----MLMASIVRDFMSMLSSKN-REDKL-TALNFIEAMG------ENSFKYVNPFLPRIINLLHDG 193 (253)
T ss_dssp HHHHHHHHHHHCH-----HHHHHHHHHHHHHTSCSS-HHHHH-HHHHHHHTCC------TTTHHHHGGGHHHHHGGGGCS
T ss_pred HHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCC-hHHHH-HHHHHHHHHh------ccCccccCcchHHHHHHHcCc
Confidence 5789999987632 356778888888776432 11222 2333333334 467888899999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhcc
Q 036770 581 HPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 581 ~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~ 647 (1061)
++.|+..|..++.+++..-.+ +-+ -+...+.. ..+-+..-+..+-||+|.++-.
T Consensus 194 deiVRaSaVEtL~~lA~~npk-lRk--------ii~~kl~e----~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 194 DEIVRASAVEALVHLATLNDK-LRK--------VVIKRLEE----LNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp SHHHHHHHHHHHHHHHTSCHH-HHH--------HHHHHHHH----CCCSCHHHHHHHHHHHHHHHHC
T ss_pred chhhhHHHHHHHHHHHHcCHH-HHH--------HHHHHHHH----hcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999974333 221 22222222 2233444577889999988654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=91.95 E-value=14 Score=38.71 Aligned_cols=216 Identities=9% Similarity=0.051 Sum_probs=124.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYI 97 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~l 97 (1061)
++.++..+.++ ++..|..|-..|.++. .+++.......|. +.++.+|..|+..|...- . +++.... +
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~-~-----~~~~~~~----l 91 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRG-GQDAVRLAIEFCS-DKNYIRRDIGAFILGQIK-I-----CKKCEDN----V 91 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHC-CHHHHHHHHHHHT-CSSHHHHHHHHHHHHHSC-C-----CTTTHHH----H
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccC-CchHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-c-----ccccchH----H
Confidence 34455555444 7888999999999886 6778888888884 568899999999886531 1 1112222 3
Q ss_pred HHHHHH-hhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHH-Hhc---
Q 036770 98 SEVIVQ-LSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEE-VFD--- 171 (1061)
Q Consensus 98 l~~l~~-~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE-v~~--- 171 (1061)
+..+.+ ..+++ ...+|...+.+++.+.... |...+..++.++..++.. +.........|..+..+ ...
T Consensus 92 ~~~L~~~~~~d~-----~~~vr~~a~~aL~~l~~~~-~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~ 165 (280)
T 1oyz_A 92 FNILNNMALNDK-----SACVRATAIESTAQRCKKN-PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLI 165 (280)
T ss_dssp HHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHH
T ss_pred HHHHHHHHhcCC-----CHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 333321 11222 2457777888888887554 333466777777777653 34444455555544331 000
Q ss_pred -cCcccchHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCC
Q 036770 172 -FSRGEMTQQKIKELKQSLNSE---FQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPM 247 (1061)
Q Consensus 172 -~~~~~l~~~r~~~l~~~l~~~---~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~ 247 (1061)
.-.+.-...|. ..-.++..- .+.++..+...+.. .++.+...+..+++..- ++..++.+...+.+
T Consensus 166 ~~l~d~~~~vr~-~a~~aL~~~~~~~~~~~~~L~~~l~d-~~~~vR~~A~~aL~~~~---------~~~~~~~L~~~l~d 234 (280)
T 1oyz_A 166 NLLKDPNGDVRN-WAAFAININKYDNSDIRDCFVEMLQD-KNEEVRIEAIIGLSYRK---------DKRVLSVLCDELKK 234 (280)
T ss_dssp HHHTCSSHHHHH-HHHHHHHHHTCCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTT---------CGGGHHHHHHHHTS
T ss_pred HHHcCCCHHHHH-HHHHHHHhhccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhC---------CHhhHHHHHHHhcC
Confidence 00011111222 222222221 34455555555543 45677888888876643 34567777777788
Q ss_pred ccchHHHHHHHHHHhc
Q 036770 248 PSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 248 ~~~~~~a~~cL~ei~~ 263 (1061)
+++|..|+.+|..+..
T Consensus 235 ~~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 235 NTVYDDIIEAAGELGD 250 (280)
T ss_dssp SSCCHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHhcCc
Confidence 8888888888877654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=90.92 E-value=36 Score=41.68 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=70.8
Q ss_pred hhHHHHHHHccC-ChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Q 036770 139 SFIPDLVAAAKT-SETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATL 217 (1061)
Q Consensus 139 ~~i~~l~~~~~~-~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L 217 (1061)
..++.++..+.. ++...+..+..|..|+.+-. .+. .+. ..+.++..+...|....++++...+.
T Consensus 150 g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~---------~~~-~i~-----~~~~~i~~Lv~~L~~~~d~~vr~~Aa 214 (780)
T 2z6g_A 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA---------SRH-AIM-----RSPQMVSAIVRTMQNTNDVETARCTS 214 (780)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH---------HHH-HHT-----TCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh---------hHH-HHH-----hccChHHHHHHHHcCCCCHHHHHHHH
Confidence 345555555543 45667778888888765311 111 111 12356666777777666788888888
Q ss_pred HHHHhcccccC--cchhcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 218 STLHAFLSWIP--LGYIFESPLLETLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 218 ~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
.+|..... .+ ...+.+...++.++.+|.+ +.++..|+.+|..+...
T Consensus 215 ~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 215 GTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 88887332 11 1234456788889988874 56889999999999874
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=90.09 E-value=15 Score=36.00 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=114.9
Q ss_pred CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHH
Q 036770 10 SQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQ 89 (1061)
Q Consensus 10 ~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~ 89 (1061)
..+++......++..+.++ ++..|..|-..|.++.. +.+.......|. +.++.+|..|+..|...- +++.
T Consensus 8 ~~~~~~~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~-------~~~~ 77 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-ERAVEPLIKALK-DEDAWVRRAAADALGQIG-------DERA 77 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC-------CGGG
T ss_pred ccccCCcchHHHHHHhcCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhC-------CHHH
Confidence 3466788888999888766 78899999999998764 567777778884 568999999999987642 1122
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHH
Q 036770 90 RDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 90 ~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE 168 (1061)
. ..|+..+ .++ ...+|...+.+++.+. -+..++.++..+... +.........|..+..
T Consensus 78 ~----~~L~~~l----~d~-----~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 78 V----EPLIKAL----KDE-----DGWVRQSAAVALGQIG-------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp H----HHHHHHT----TCS-----SHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred H----HHHHHHH----cCC-----CHHHHHHHHHHHHHhC-------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 2 2233322 222 2346666666666542 245667777766543 3445555555554421
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC--
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP-- 246 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~-- 246 (1061)
+..+..+...+. ..++.+...++.+++.+- .+..++.+..++.
T Consensus 137 -------------------------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~---------~~~~~~~L~~~l~d~ 181 (201)
T 3ltj_A 137 -------------------------ERAVEPLIKALK-DEDGWVRQSAADALGEIG---------GERVRAAMEKLAETG 181 (201)
T ss_dssp -------------------------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC---------SHHHHHHHHHHHHHC
T ss_pred -------------------------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC---------chhHHHHHHHHHhCC
Confidence 112222333343 346678888888887652 2345555555553
Q ss_pred CccchHHHHHHHHHHh
Q 036770 247 MPSYRNLTLQCLTEVG 262 (1061)
Q Consensus 247 ~~~~~~~a~~cL~ei~ 262 (1061)
++.+|..|.+.|..+-
T Consensus 182 ~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 182 TGFARKVAVNYLETHK 197 (201)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4567888888776653
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=88.51 E-value=40 Score=38.69 Aligned_cols=221 Identities=11% Similarity=0.050 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCc----------ccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCC
Q 036770 15 VALLDATVAAFYGTGSKEERTAADQILRDLQNNP----------DMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNA 84 (1061)
Q Consensus 15 i~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~----------~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~ 84 (1061)
...+..++..+.+ .++..|..|-..|..+-..+ ++......+|..+.++.++..|+..|.+.-.
T Consensus 16 ~~~i~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~----- 89 (529)
T 1jdh_A 16 TRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----- 89 (529)
T ss_dssp -CHHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----
T ss_pred HhhHHHHHHHhCC-CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-----
Confidence 3346666665554 47888999999998876543 3455555667666688999999999998433
Q ss_pred CCHHHHHHHHH-HHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCc-----cchhHHHHHHHccCC-hhHHHH
Q 036770 85 LPVEQRDGMKN-YISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPAR-----WRSFIPDLVAAAKTS-ETICEN 157 (1061)
Q Consensus 85 l~~e~~~~lr~-~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~-----Wp~~i~~l~~~~~~~-~~~~~~ 157 (1061)
.++.+..+.+ ..+..+.+...++. .-++...+.++..+.... +.. =...++.++..++.+ ......
T Consensus 90 -~~~~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 90 -HREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162 (529)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred -CchhHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 2334443332 34555555433322 346666778888777653 121 145677788887754 333444
Q ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccC-cchhcchh
Q 036770 158 CMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIP-LGYIFESP 236 (1061)
Q Consensus 158 ~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~-~~~i~~~~ 236 (1061)
....|..++.. + . .-+. .+... ..+..+...+...........+..++......-. ...+.+..
T Consensus 163 ~~~~L~~la~~--~---~----~~~~----~i~~~--~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g 227 (529)
T 1jdh_A 163 TTDCLQILAYG--N---Q----ESKL----IILAS--GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227 (529)
T ss_dssp HHHHHHHHHTT--C---H----HHHH----HHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTT
T ss_pred HHHHHHHHHhC--C---H----HHHH----HHHHC--CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCC
Confidence 45556555421 0 0 1111 11111 2244445556655555566666666655443211 12244456
Q ss_pred hHHHHHhhCCC--ccchHHHHHHHHHHhc
Q 036770 237 LLETLLKFFPM--PSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 237 ll~~l~~~L~~--~~~~~~a~~cL~ei~~ 263 (1061)
.++.+..++.+ +.++..++.+|..+..
T Consensus 228 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 77777776654 3456667777766654
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=86.17 E-value=2.9 Score=44.67 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=59.4
Q ss_pred chhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHHHHH
Q 036770 496 NNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTVVNK 572 (1061)
Q Consensus 496 ~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~vl~~ 572 (1061)
...+.++|+++.++....+. ...|. ...++.|..+..+. +. .++...+|+++..+.--...-..+ ..++..
T Consensus 140 ~v~~~A~~ALsnl~~~~~~~-~~~~~~~ggi~~L~~lL~~~---d~--~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 140 TVRVKALFAISCLVREQEAG-LLQFLRLDGFSVLMRAMQQQ---VQ--KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHHSS---CH--HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHH-HHHHHHCCCHHHHHHHHcCC---CH--HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 44677899999998765432 22333 23566666655431 22 233335566665443211111222 235667
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHhh
Q 036770 573 LFEFMHETHPGVQDMACDTFLKIVQKCK 600 (1061)
Q Consensus 573 L~~~~~~~~~~v~~~A~~~f~~i~~~c~ 600 (1061)
|+..+..+++.|+..|+.++..|++.+.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 7777777788999999999999997654
|
| >1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 | Back alignment and structure |
|---|
Probab=84.90 E-value=11 Score=40.12 Aligned_cols=124 Identities=13% Similarity=0.202 Sum_probs=73.2
Q ss_pred hhhHHHHH-hhCC-CccchH-HHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHH
Q 036770 235 SPLLETLL-KFFP-MPSYRN-LTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQ 311 (1061)
Q Consensus 235 ~~ll~~l~-~~L~-~~~~~~-~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~ 311 (1061)
+++++.++ .+-. .|+.|+ ..+.|+..++.+ .+....+.+..+|+.+.+-...++.. ++ ++-+|...
T Consensus 72 ppLl~~VL~DY~~~vp~aRepeVL~l~~tii~k-l~~~i~~~vp~Il~~VFe~TL~MI~~--df--------~eyPehR~ 140 (321)
T 1w9c_A 72 PPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNK-LGGHITAEIPQIFDAVFECTLNMINK--DF--------EEYPEHRT 140 (321)
T ss_dssp HHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHHHHHHSS--TT--------TCSHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHhc--cc--------ccChHHHH
Confidence 45665544 5533 466663 477777777774 22222334455555555444444432 11 23467888
Q ss_pred HHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHH
Q 036770 312 NLALFFTSFFKFHIR-VLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELF 372 (1061)
Q Consensus 312 ~l~~l~~~~~~~~~~-ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~ 372 (1061)
++-+++-++...... ++.=+++....+ ++.++-..+|++++|++..++--..+.+.+.
T Consensus 141 ~Ff~LL~ai~~~cF~al~~lp~~~fklv---idsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 141 NFFLLLQAVNSHCFPAFLAIPPTQFKLV---LDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHHHHCTTHHHHSCHHHHHHH---HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHH---HHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 888888888877433 344333222222 3555556789999999999988888777663
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.91 E-value=5.8 Score=39.18 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=12.0
Q ss_pred HHHhhhcCChhHHHHHHHHHHHH
Q 036770 573 LFEFMHETHPGVQDMACDTFLKI 595 (1061)
Q Consensus 573 L~~~~~~~~~~v~~~A~~~f~~i 595 (1061)
|...+.++++.|+..|+.++.++
T Consensus 143 L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 143 LIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh
Confidence 33344444555555665555554
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=81.87 E-value=47 Score=33.60 Aligned_cols=213 Identities=12% Similarity=0.056 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHH
Q 036770 11 QPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQR 90 (1061)
Q Consensus 11 ~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~ 90 (1061)
.+.+++++..-+. ..++-+..+-.+.+++.......+| ...|+.++.=|+++|++.++. .|...+
T Consensus 5 ~ii~~~~lre~L~----------sWkiK~a~ela~~~e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~----~~~~l~ 69 (265)
T 3b2a_A 5 NPISKTELRELVL----------SWQILDAVSLALEDKRALFLILELA-GEDDETTRLRAFVALGEILKR----ADSDLR 69 (265)
T ss_dssp CCCCHHHHHHHHH----------TTCHHHHHHHHHHCHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHH----SCHHHH
T ss_pred ccccHHHHHHHHH----------HhhHHHHHHHHHhchhHHHHHHHHH-hccchHHHHHHHHHHHHHHHh----cccccc
Confidence 4456666555553 2345555666777888888888888 557899999999999999985 555555
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcC--CccchhHHHHHHHccCCh-hHHHHHHHHHHHHHH
Q 036770 91 DGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWP--ARWRSFIPDLVAAAKTSE-TICENCMAILKLLSE 167 (1061)
Q Consensus 91 ~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p--~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~E 167 (1061)
..+-+.+++-+........ .+ +.=|...++-.+....-+ +.+.-..+.+.+..+.+. ...+. .+|
T Consensus 70 ~~~~e~~Ld~iI~llk~~d----Ek-val~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~e-------aae 137 (265)
T 3b2a_A 70 MMVLERHLDVFINALSQEN----EK-VTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIE-------TID 137 (265)
T ss_dssp HHHHHHHHHHHHHTCCSTT----HH-HHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHhccc----hh-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHH-------HHH
Confidence 5555566666665432221 11 333445666666665522 233444455555555432 22222 233
Q ss_pred HHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC-
Q 036770 168 EVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP- 246 (1061)
Q Consensus 168 Ev~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~- 246 (1061)
.+...+.. ...+.|.+++...+ .+.+..+..++|..+...-+.-.-..+++ +++.-+-.+|+
T Consensus 138 ~Lgklkv~---------------~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~-~I~~eI~elL~~ 200 (265)
T 3b2a_A 138 VLSKLQPL---------------EDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLT-LILDEIPSLLQN 200 (265)
T ss_dssp HHHHCCBS---------------CCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGG-GTTTTHHHHHTC
T ss_pred HhCcCCcc---------------cchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHH-HHHHHHHHHHcC
Confidence 32222111 12456778888888 67788888888888887766433111222 11111222333
Q ss_pred -CccchHHHHHHHHHHhcCcCC
Q 036770 247 -MPSYRNLTLQCLTEVGALNFG 267 (1061)
Q Consensus 247 -~~~~~~~a~~cL~ei~~~~~~ 267 (1061)
||.+++.|++.+-++++....
T Consensus 201 eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 201 DNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHHcCccc
Confidence 778999999999999997543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1061 | ||||
| d1w9ca_ | 321 | a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Ho | 1e-116 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-21 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 3e-17 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 2e-11 |
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 359 bits (923), Expect = e-116
Identities = 146/325 (44%), Positives = 206/325 (63%), Gaps = 21/325 (6%)
Query: 711 LSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKA 770
+ Q+ I+LDMLNVYK SE IS++I + G +K ++ +R+VKRETLKLI ++ ++
Sbjct: 1 VIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRS 60
Query: 771 EDQPQIG---------------KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAI 815
D + ++NVP ARE EVLS A I+NK G + ++P+IF+A+
Sbjct: 61 NDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAV 120
Query: 816 FQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTE 875
F+CTL MI K+FE+YPEHR FF LL+A+ +HCFPA + + Q KLV+DSIIWAF+HT
Sbjct: 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTM 180
Query: 876 RNIAETGLNLLLEMLKNF-QASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVL 934
RN+A+TGL +L +L+N Q FY+TYF I Q IF+V+TDT H G +H +L
Sbjct: 181 RNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASIL 240
Query: 935 QHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGL 994
++F LVE G ++ L P NN +F++EY LL ++FP++ A+V FV GL
Sbjct: 241 AYMFNLVEEGKISTSLN-----PGNPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGL 295
Query: 995 LESRNDLSTFKNHIRDFLVQSKEFS 1019
D+ FK H+RDFLVQ KEF+
Sbjct: 296 FSLNQDIPAFKEHLRDFLVQIKEFA 320
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 99.2 bits (246), Expect = 1e-21
Identities = 83/788 (10%), Positives = 231/788 (29%), Gaps = 70/788 (8%)
Query: 18 LDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKN-LNTKFFALQVLEG 76
L+ + +++ LR L+ L ++H++ ++ L+T+ +
Sbjct: 4 LETVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKN 63
Query: 77 VIKYRWN------ALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILK 130
IK +W LP + +K I +++ ++ + I
Sbjct: 64 FIKRKWVDENGNHLLPANNVELIKKEIVPLMIS---------LPNNLQVQIGEAISSIAD 114
Query: 131 HEWPARWRSFIPDLVAAAKTSETI-CENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSL 189
++P RW + + DL + + + + + + + + R + +IK +
Sbjct: 115 SDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVF 174
Query: 190 NSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYI------FESPLLETLLK 243
+ F + + ++A++ L + L + + F ++ +
Sbjct: 175 TAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMG 234
Query: 244 FFPMP-SYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQ--------LQTILPPTTN 294
F SY N L+ E + + ++ + + + T N
Sbjct: 235 IFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWN 294
Query: 295 IPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDET 354
+ + ++ + ++L+ + + + ++ + + ++
Sbjct: 295 LLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDV 354
Query: 355 EVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYA 414
E+F+ + LE D + D + + L
Sbjct: 355 ELFEDDPIEYIRRDLEGSDTDT-----------------RRRACTDFLKELKEKNEVLVT 397
Query: 415 VPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHE 474
+ + + ++ + S +
Sbjct: 398 NIFLAHMKGFVDQYMS-------DPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450
Query: 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLC-WAIGSISGSMMEEQENRFLVMVIRDLLNLCE 533
+ K+++ L+ + L I + + + Q + ++ L
Sbjct: 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEY 510
Query: 534 MTKGKDNKAVIASNIMYVVGQYPRFLRAHWK---FLKTVVNKLFEFMHETHPGVQDMACD 590
+ + + P F+ + ++ L + + + +A +
Sbjct: 511 VVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN 570
Query: 591 TFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL-----EPHQIHTFYESVGHMI 645
FL + + + +P +LL+ V + P H +ES+G ++
Sbjct: 571 EFL---MRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627
Query: 646 QAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASA 705
Q + +M +SE I + V + V+ I ++ +A
Sbjct: 628 NYTQR-QNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF-VVEQSATIPESIKPLAQP 685
Query: 706 LGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIET 765
L + ++ + + K + + SS P + ++ + L+E
Sbjct: 686 LLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEH 745
Query: 766 FLDKAEDQ 773
+ +
Sbjct: 746 IMLLIDMN 753
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.1 bits (209), Expect = 3e-17
Identities = 76/711 (10%), Positives = 197/711 (27%), Gaps = 37/711 (5%)
Query: 31 KEERTAADQILRDLQNNPDMWLQVVHILQN--SKNLNTKFFALQVLEGVIKYRWNALPVE 88
+ Q L L PD ++ +L S++ T+ + +L+ +K + P
Sbjct: 25 TTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNG 84
Query: 89 QRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAA 148
D +K+ E + + + R + I++ I W +P L +
Sbjct: 85 VTDFIKS---ECLNNIGDSSPLIR------ATVGILITTIASKGELQNWPDLLPKLCSLL 135
Query: 149 K-TSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS 207
CE L+ + E+ + ++ + + + F+ A
Sbjct: 136 DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC 195
Query: 208 QRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNFG 267
+I T + + S+ +F E + + L+ + +
Sbjct: 196 VNQFIISRTQALMLHIDSFTE--NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 253
Query: 268 DFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRV 327
+ + + E + + + + + I +
Sbjct: 254 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 313
Query: 328 LESTQ-----ENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLEN-- 380
+ E I + + S + + ++ + E+ D +
Sbjct: 314 ILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNL 373
Query: 381 PAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAK---PEEVLIV 437
+A + + + + LL+ + + K +++ + ++
Sbjct: 374 RKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY 433
Query: 438 EDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSG-EDWTWN 496
E + + + D LV+ Y + + + + +++ L D
Sbjct: 434 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKR 493
Query: 497 NLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIA--SNIMYVVGQ 554
C A ++ E +L ++ L+ + K+ + + VG
Sbjct: 494 VQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 552
Query: 555 YPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPF 614
+ + ++ K M + + + + F+ EP
Sbjct: 553 HLNKPEYIQMLMPPLIQKW--NMLKDEDKDLFPLLECLSSVATALQSGFLPY----CEPV 606
Query: 615 VSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLM--LLPNQKWSEI 672
++ + T+A + + + L + S I
Sbjct: 607 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNI 666
Query: 673 IAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLN 723
+ Q + K +V ++ +L T ++ I LN
Sbjct: 667 LTLMYQCMQ-DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLN 716
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (158), Expect = 2e-11
Identities = 92/835 (11%), Positives = 223/835 (26%), Gaps = 91/835 (10%)
Query: 31 KEERTAADQILRDL--QNNPDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWNALPV 87
+ E AA + L +N P +++ +L N + + A ++ + + +
Sbjct: 15 RLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74
Query: 88 EQR-------DGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRS 139
+ + + + ++ E + + + I E P +W
Sbjct: 75 QYQQRWLAIDANARREVKNYVLHTLGTETYRP------SSASQCVAGIACAEIPVNQWPE 128
Query: 140 FIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHEL 199
IP LVA + + L+ + D ++L+ N I +
Sbjct: 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--------EQLQDKSNEILTAIIQG 180
Query: 200 CLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFF--PMPSYRNLTLQC 257
++ L F +++ + + P R LQ
Sbjct: 181 MRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240
Query: 258 LTEVGALNFGD---------FYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQA 308
L ++ +L + F ++ V LQ I + E +A
Sbjct: 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300
Query: 309 FIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFV 368
Q TS F + Q + L L D+ K
Sbjct: 301 AEQGRPPEHTSKFY----AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356
Query: 369 LELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRM 428
D P + ++ + V G L PL M + +
Sbjct: 357 TCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL 416
Query: 429 AKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQL 488
K V++ + + R + + + L L + +++ +
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE------PRVASNV 470
Query: 489 SGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIA--- 545
+ + + ++++ LL + G N +
Sbjct: 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530
Query: 546 -----------SNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLK 594
V + + L+ + +Q + C T
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQN 590
Query: 595 IVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKR 654
+++K + + + + + A + E + +V +++
Sbjct: 591 VLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALM-----AVSTLVEVLGGEF-- 643
Query: 655 EEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQI 714
+Y++ + V + ++ + F ++
Sbjct: 644 LKYMEAFKPFLGIGLKNY-----------AEYQVCLAAVGLVGDLCRALQSNIIPFCDEV 692
Query: 715 SVIFLDMLNVYKMYSELISSSISSGGPFASKTS-----YVKLLRSVKRETLKLIETFLDK 769
+ L+ L ++ + +S G A Y++++ + L + +
Sbjct: 693 MQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNT------LQQASQAQ 746
Query: 770 AEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT 824
+ + + RES L + I+ KG ++V + +++
Sbjct: 747 VDKSDYDMVDYLNELRES-CLEAYTGIVQGLKGDQ-ENVHPDVMLVQPRVEFILS 799
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1061 | |||
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 100.0 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.96 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.01 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.94 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.63 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.46 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.34 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.25 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.62 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.46 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 96.1 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 95.97 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 95.74 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 95.25 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 93.45 | |
| d1w9ca_ | 321 | Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax | 90.47 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 88.62 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 88.55 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 87.6 |
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-54 Score=462.74 Aligned_cols=303 Identities=48% Similarity=0.853 Sum_probs=286.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhh--------------
Q 036770 713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK-------------- 778 (1061)
Q Consensus 713 ~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~-------------- 778 (1061)
|++.||.+++++|+.+|+.|...++..|+.+++.|.+|.||++||+|++++++|+++.++++.+.+
T Consensus 3 ql~~i~~dml~~Y~~~S~~I~~~i~~~G~~~~k~~~vr~lr~iKkeiLkLi~t~i~~~~d~~~v~~~~i~pl~~~vL~DY 82 (321)
T d1w9ca_ 3 QLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDY 82 (321)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCChHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999988554422
Q ss_pred -cCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCCh
Q 036770 779 -QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSS 857 (1061)
Q Consensus 779 -~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~ 857 (1061)
.+.|+.|+|++|++++++++|+++.+.+.++.|++.||+||++||++|+++|||||.+||+|+++++++||+.++.+|+
T Consensus 83 ~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~ 162 (321)
T d1w9ca_ 83 QRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP 162 (321)
T ss_dssp HTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCH
T ss_pred HhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCH
Confidence 3889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHH
Q 036770 858 QQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA-SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQH 936 (1061)
Q Consensus 858 ~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~ 936 (1061)
++++.+++|++||++|++|++++.||+.+.++++++.. +..+++||++||.+++.++|.|+||++|++||+.|+.+|..
T Consensus 163 ~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~ 242 (321)
T d1w9ca_ 163 TQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAY 242 (321)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998865 45789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhh
Q 036770 937 LFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSK 1016 (1061)
Q Consensus 937 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k 1016 (1061)
|+.+++.+.|+.|+... .+..|..++++|+.++|.++||+++++|+..|+++|++.++|..+||+++|||++++|
T Consensus 243 Lf~ive~~~i~~~l~~~-----~~~~n~~~l~e~l~~lL~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFLI~~k 317 (321)
T d1w9ca_ 243 MFNLVEEGKISTSLNPG-----NPVNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIK 317 (321)
T ss_dssp HHHHHHTTCCCSCSCSS-----SCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccccccccccc-----cccchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhh
Confidence 99999999999998653 3358899999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 036770 1017 EFSA 1020 (1061)
Q Consensus 1017 ~~~~ 1020 (1061)
||+|
T Consensus 318 ef~g 321 (321)
T d1w9ca_ 318 EFAG 321 (321)
T ss_dssp TTTC
T ss_pred hcCC
Confidence 9987
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-35 Score=373.02 Aligned_cols=720 Identities=16% Similarity=0.254 Sum_probs=467.5
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhcCcccHHHHHHHHcc--CCChHHHHHHHHHHHHHHhcccCCCCHHHH
Q 036770 15 VALLDATVAAFYGTG--SKEERTAADQILRDLQNNPDMWLQVVHILQN--SKNLNTKFFALQVLEGVIKYRWNALPVEQR 90 (1061)
Q Consensus 15 i~~l~~av~~ly~~~--~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~--s~~~~~rffaa~~L~~~I~~~w~~l~~e~~ 90 (1061)
-+.++++++.+.+.. |++.|++|+++|+++++.|+.|.++..++.. +.+..+|.+|+.+|++.|+++|..++++.+
T Consensus 7 ~~~l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~ 86 (888)
T d1qbkb_ 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT 86 (888)
T ss_dssp HTTHHHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCC
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 344555555554433 5678999999999999999999998888864 346789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHH
Q 036770 91 DGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEV 169 (1061)
Q Consensus 91 ~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv 169 (1061)
..||+.++..+.. . +..+|++++.+++.|+.+++|+.||++++.+++.+.++ ....+.++..|..++|++
T Consensus 87 ~~Ik~~ll~~l~~--~-------~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~ 157 (888)
T d1qbkb_ 87 DFIKSECLNNIGD--S-------SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 157 (888)
T ss_dssp HHHHHHHTTGGGC--C-------CSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGG
T ss_pred HHHHHHHHHHHcC--C-------CHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999987643 1 13477889999999999999999999999999887654 234556788888898875
Q ss_pred hccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcc-hhhHHHHHhhCC--
Q 036770 170 FDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE-SPLLETLLKFFP-- 246 (1061)
Q Consensus 170 ~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~-~~ll~~l~~~L~-- 246 (1061)
.+....+ ........++..+.+.++. .++.++..+++|+..++...+-..... +.+++.++....
T Consensus 158 ~~~~~~~-----------~~~~~~~~ll~~ll~~~~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 225 (888)
T d1qbkb_ 158 AEILDSD-----------VLDRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDE 225 (888)
T ss_dssp HHHHHTC--------------CCSTTTTHHHHTGGGS-SSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCC
T ss_pred HHHhhHH-----------HHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 4311000 0011223344444444443 345667788999998887554322111 456777776655
Q ss_pred CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036770 247 MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIR 326 (1061)
Q Consensus 247 ~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ 326 (1061)
++++|..+++||..++...+.. .... +..++
T Consensus 226 ~~~vr~~~~~~l~~l~~~~~~~-l~~~-----------l~~i~------------------------------------- 256 (888)
T d1qbkb_ 226 EPEVRKNVCRALVMLLEVRMDR-LLPH-----------MHNIV------------------------------------- 256 (888)
T ss_dssp CSSSTTHHHHTTTTTSCSCTTT-TTTT-----------TTTTT-------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHhHHH-HHHH-----------HHHHH-------------------------------------
Confidence 4567888888888777642210 0000 00000
Q ss_pred HhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhh
Q 036770 327 VLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQL 406 (1061)
Q Consensus 327 ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~ 406 (1061)
++++.....+++++...+++||..+++.-.. ..
T Consensus 257 ----------------~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~--~~----------------------------- 289 (888)
T d1qbkb_ 257 ----------------EYMLQRTQDQDENVALEACEFWLTLAEQPIC--KD----------------------------- 289 (888)
T ss_dssp ----------------TTTTTTTTSSCHHHHHHHHHHHCCCCSGGGG--TT-----------------------------
T ss_pred ----------------HHHHHhcCCCcHHHHHHHHHHHHHHHHhhhh--HH-----------------------------
Confidence 1111222334456666777888776532100 00
Q ss_pred hhhhhhhHHhhHHHHHHHHHhhCCCccccc------------------------------------cccCCchhHHhhh-
Q 036770 407 LQRRQLYAVPLSKLRMLMICRMAKPEEVLI------------------------------------VEDENGNIVRETM- 449 (1061)
Q Consensus 407 ~~~~~~~~~~l~~L~~~li~km~~p~e~~~------------------------------------~~~d~~e~~~e~~- 449 (1061)
...+++..+.+.+...|.+++.... ...+..+...+..
T Consensus 290 -----~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (888)
T d1qbkb_ 290 -----VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDD 364 (888)
T ss_dssp -----TTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCC
T ss_pred -----HHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhh
Confidence 0011111122222222222211000 0000000000110
Q ss_pred -cchhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHH
Q 036770 450 -KDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDL 528 (1061)
Q Consensus 450 -~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~L 528 (1061)
.+...+.+++....+|..+++..++++...+++.+.+.+.+ .+|+..|++++++|+|++...+. -..+++++++.|
T Consensus 365 ~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s--~~~~~reaa~~alg~i~eg~~~~-~~~~l~~li~~l 441 (888)
T d1qbkb_ 365 DDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH--HEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHL 441 (888)
T ss_dssp CSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTS--SSHHHHHHHHHHHHHHTTTSHHH-HTTTHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHhhhhhhhHHHH-hcccchhhhHHH
Confidence 11122445666777888888887888888888888776643 47999999999999999865433 356788999988
Q ss_pred HHhhhhhcCCcchHHHHHhHHHHhccchHHHHH--hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhccccc
Q 036770 529 LNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA--HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIV 606 (1061)
Q Consensus 529 l~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~--~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~ 606 (1061)
++...+ +.+.++...+|++|+|++|+.. +..++.++++.++..+.++++.|+..||.+|..+++.+...+.+
T Consensus 442 ~~~l~d-----~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p- 515 (888)
T d1qbkb_ 442 IQCLSD-----KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP- 515 (888)
T ss_dssp HHHTTS-----SCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGG-
T ss_pred HHhccC-----CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhh-
Confidence 887654 4566677789999999999965 34588999999999888888999999999999999999887764
Q ss_pred ccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCH
Q 036770 607 QVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQ 686 (1061)
Q Consensus 607 ~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~ 686 (1061)
|+..++..+.........+.+..++++++.++...+....+..+++.++.++...|+.+. + .+.
T Consensus 516 -------~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~----~~~ 579 (888)
T d1qbkb_ 516 -------YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK-----D----EDK 579 (888)
T ss_dssp -------GHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSC-----T----TCT
T ss_pred -------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcc-----c----chH
Confidence 899999988877777777788889999999998776654446788888888877765321 0 121
Q ss_pred HHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 036770 687 DVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETF 766 (1061)
Q Consensus 687 ~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~ 766 (1061)
.+..+++|++.++..++..|.|+...+++.++++....- . ..+...
T Consensus 580 ----~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l---~---------------------------~~~~~~ 625 (888)
T d1qbkb_ 580 ----DLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTL---A---------------------------QAMLNN 625 (888)
T ss_dssp ----THHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHH---H---------------------------HHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHH---H---------------------------HHHHHh
Confidence 245678889999999999999988888776654432110 0 000000
Q ss_pred HhhCCChhhhhhcCCCCc-chHHHHHHHHHHHHhhhccCCCChHH--HHHHHHHHhHHhhhhccCCChHhHHHHHHHHHH
Q 036770 767 LDKAEDQPQIGKQNVPDA-RESEVLSLFATIINKYKGAMIDDVPR--IFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRA 843 (1061)
Q Consensus 767 i~~~~~~~~l~~~~~~~~-r~~~~L~l~~~li~~~~~~~~~~l~~--i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~ 843 (1061)
.... . ...+.. .....+.+++.++..++..+.+++.. ++..+.. .++ ...|++|...|.+++.
T Consensus 626 ~~~~-----~--~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~----~l~---~~~~~vr~~a~~llgd 691 (888)
T d1qbkb_ 626 AQPD-----Q--YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ----CMQ---DKMPEVRQSSFALLGD 691 (888)
T ss_dssp HCTT-----T--SCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHH----HHT---CSSHHHHHHHHHHHHH
T ss_pred cccc-----c--ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHH----HhC---CCChHHHHHHHHHHHH
Confidence 0000 0 011111 12346778888888877665433321 2222222 222 3578999999999999
Q ss_pred HHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccCC-
Q 036770 844 IATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTF- 922 (1061)
Q Consensus 844 i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~~- 922 (1061)
+..+++..+. ..+..++..+..++++...++...++..+.++....+. + ++.|+..++..++.++.++.
T Consensus 692 l~~~~~~~~~----~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~-~-----~~py~~~il~~L~~il~~~~~ 761 (888)
T d1qbkb_ 692 LTKACFQHVK----PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-E-----MQPYIPMVLHQLVEIINRPNT 761 (888)
T ss_dssp HHHHCGGGTG----GGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGG-G-----GGGGSHHHHHHHHHHHTCTTC
T ss_pred HHHhhhHHHH----HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH-H-----hhhhHHHHHHHHHHHHcCCCc
Confidence 9999887653 25677888888889999889988888888888766642 1 23344556666666776543
Q ss_pred CccchHHHHHHHHHHHH
Q 036770 923 HKPGFKLHVLVLQHLFC 939 (1061)
Q Consensus 923 ~~~~f~~~~~~L~~l~~ 939 (1061)
++..-.-.+..|+++..
T Consensus 762 ~~~v~~n~~~~lgrl~~ 778 (888)
T d1qbkb_ 762 PKTLLENTAITIGRLGY 778 (888)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33333445556665443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-24 Score=274.35 Aligned_cols=699 Identities=15% Similarity=0.161 Sum_probs=423.5
Q ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhcC--cccHHHHHHHHcc-CCChHHHHHHHHHHHHHHhcccC-----
Q 036770 13 MDVALLDATVAAF-YGTGSKEERTAADQILRDLQNN--PDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWN----- 83 (1061)
Q Consensus 13 ~di~~l~~av~~l-y~~~~~~~r~~A~~~L~~fq~s--~~aw~~~~~iL~~-s~~~~~rffaa~~L~~~I~~~w~----- 83 (1061)
+|.+++.+++... ++| |++.|++|+++|++++++ |+.+..+.+++.+ +.+.++|++|+.+|++.|.++|.
T Consensus 1 M~~~~~~~~L~~~~~s~-d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~ 79 (861)
T d2bpta1 1 MSTAEFAQLLENSILSP-DQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79 (861)
T ss_dssp CCHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence 4778999999775 566 888999999999999986 5677778888865 34679999999999999998873
Q ss_pred -------CCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccCC--hh
Q 036770 84 -------ALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKTS--ET 153 (1061)
Q Consensus 84 -------~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~~--~~ 153 (1061)
.++++.|..+|+.+++.+.. + +..+|++++.+++.|+..++|. .||++++.+++.+.++ ..
T Consensus 80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~----~-----~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~ 150 (861)
T d2bpta1 80 FAQRWITQVSPEAKNQIKTNALTALVS----I-----EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHTC----S-----SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHH
T ss_pred HHhhhHhcCCHHHHHHHHHHHHHHHcC----C-----CHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHH
Confidence 58999999999999987743 1 2568999999999999999997 7999999999998754 35
Q ss_pred HHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHhcccccCcchh
Q 036770 154 ICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSA-SQRTDLIRATLSTLHAFLSWIPLGYI 232 (1061)
Q Consensus 154 ~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~-~~~~~l~~~~L~~l~~~l~wi~~~~i 232 (1061)
.+..++.+|..++|++.... ..+. .....++..+.+.+.. ..+..++..+++|+.+++.+++.+..
T Consensus 151 ~~~~al~~l~~i~e~~~~~~-~~~~------------~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 217 (861)
T d2bpta1 151 VKRASLLALGYMCESADPQS-QALV------------SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTTS-STTG------------GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHH-HHHH------------HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHH
Confidence 67778999999998764321 1111 1223344334444433 34678899999999999988765432
Q ss_pred cc---hhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchH
Q 036770 233 FE---SPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQ 307 (1061)
Q Consensus 233 ~~---~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~ 307 (1061)
.. +.+++.++..+. +++.+..+++|+..++...+. .+...
T Consensus 218 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~-~~~~~---------------------------------- 262 (861)
T d2bpta1 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT-FMKPY---------------------------------- 262 (861)
T ss_dssp SHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-GCHHH----------------------------------
T ss_pred hhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHH----------------------------------
Confidence 21 345556665554 456777788888777764211 01100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCccccccc
Q 036770 308 AFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANM 387 (1061)
Q Consensus 308 ~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~ 387 (1061)
+. . .+ ...+.......++++...+++||..+.+...+....... .
T Consensus 263 --l~---~---------------------~l---~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~----~-- 307 (861)
T d2bpta1 263 --ME---Q---------------------AL---YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ----F-- 307 (861)
T ss_dssp --HH---H---------------------TH---HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH----C--
T ss_pred --HH---H---------------------HH---HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHh----h--
Confidence 00 0 00 000111123345566777788888877653221100000 0
Q ss_pred CCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHH
Q 036770 388 MGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIY 467 (1061)
Q Consensus 388 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~ 467 (1061)
+.. . ........+.+..+.+.+..-+.++.+. .++++ +..+.....++..
T Consensus 308 -~~~------~--------~~~~~~~~~~l~~i~~~l~~~l~~~~~~----~~~~~-----------~~~~~~~~~~l~~ 357 (861)
T d2bpta1 308 -PQS------P--------LQSYNFALSSIKDVVPNLLNLLTRQNED----PEDDD-----------WNVSMSAGACLQL 357 (861)
T ss_dssp -TTC------S--------CCCCCHHHHHHHHHHHHHHHHTTCCCCC-----CCCC-----------CHHHHHHHHHHHH
T ss_pred -hhh------H--------HHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccchh-----------HHHHHHHHHHHHH
Confidence 000 0 0011123555667777777766655431 11111 1112233444444
Q ss_pred HhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHh
Q 036770 468 LSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASN 547 (1061)
Q Consensus 468 l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~ 547 (1061)
++...++.....+.+.+.... ...+|...+++++++|++++.........++.++++.+++...+ +...++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d-----~~~~vr~~ 430 (861)
T d2bpta1 358 FAQNCGNHILEPVLEFVEQNI--TADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND-----QSLQVKET 430 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC-----SCHHHHHH
T ss_pred HHhhcchhhhhhhcchhhhhh--hhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcC-----cchhhhhH
Confidence 444445555555666555443 34579999999999999998877665667888888888876654 34555666
Q ss_pred HHHHhccchHHHHHh---HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHH
Q 036770 548 IMYVVGQYPRFLRAH---WKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLAT 624 (1061)
Q Consensus 548 i~~~ig~y~~~l~~~---~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~ 624 (1061)
.++++|++.+++... ..+++.++..++....+ ++.++..||.++..++..+....... ..+++..++..+-.
T Consensus 431 a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~l~~ 505 (861)
T d2bpta1 431 TAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSP----IYNFYPALVDGLIG 505 (861)
T ss_dssp HHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCG----GGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccch----hhHHHhhHHHHHHH
Confidence 888999999998643 45788888888876544 67899999999999999887655442 23455566655544
Q ss_pred hhh--cCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHH-HHHHHhHHHH
Q 036770 625 TVA--DLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRT-VLNILQTNTS 701 (1061)
Q Consensus 625 ~~~--~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~il~~~~~ 701 (1061)
... ......+...+++++.++...++.- ..++..++......+.+.+....... ...+...... ...++.++..
T Consensus 506 ~~~~~~~~~~~~~~~~~al~~~i~~~~~~~--~~~~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~ 582 (861)
T d2bpta1 506 AANRIDNEFNARASAFSALTTMVEYATDTV--AETSASISTFVMDKLGQTMSVDENQL-TLEDAQSLQELQSNILTVLAA 582 (861)
T ss_dssp HHTCSCCGGGHHHHHHHHHHHHHHHCCGGG--HHHHHHHHHHHHHHHHHHTTSCGGGC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHhHHHHHHHHHHHHHHH
Confidence 332 2234457788999999998887643 24666666655555544332111100 0011111111 2334445555
Q ss_pred HHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhh----HHHHHHHHHHHHHHHHHHhhCCChhhhh
Q 036770 702 VASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYV----KLLRSVKRETLKLIETFLDKAEDQPQIG 777 (1061)
Q Consensus 702 i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~----~~~~~~~~~il~ll~~~i~~~~~~~~l~ 777 (1061)
+....+..+.++...+++.+++.+..... ...+.... .....+++.+.+.+..++... ....
T Consensus 583 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-----------~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l---~~~l 648 (861)
T d2bpta1 583 VIRKSPSSVEPVADMLMGLFFRLLEKKDS-----------AFIEDDVFYAISALAASLGKGFEKYLETFSPYL---LKAL 648 (861)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHHHHSTTG-----------GGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH---HHHH
T ss_pred HHhcchhhHHHHHHHHHHHHhhhcccCCc-----------hhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH---HHHh
Confidence 56666666667667676665544332110 00000000 111112222222222222111 0001
Q ss_pred hcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCCh
Q 036770 778 KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSS 857 (1061)
Q Consensus 778 ~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~ 857 (1061)
++..+..+ ...+.+++.++...+..+.++++.++..++ ..+++ ...+++++...+..++.++......+.
T Consensus 649 ~~~~~~v~-~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~----~~l~~-~~~~~~~k~~~~~~l~~i~~~~~~~~~---- 718 (861)
T d2bpta1 649 NQVDSPVS-ITAVGFIADISNSLEEDFRRYSDAMMNVLA----QMISN-PNARRELKPAVLSVFGDIASNIGADFI---- 718 (861)
T ss_dssp HCTTSHHH-HHHHHHHHHHHHHTGGGGHHHHHHHHHHHH----HHHHC-TTCCTTHHHHHHHHHHHHHHHHGGGGH----
T ss_pred CCCCHHHH-HHHHHHHHHHHHHhHHHhHhhHHHHHHHHH----HHhCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 11111111 246778888888888777777776666655 34433 346788999999999999987665553
Q ss_pred HHHHHHHHHHHHHhcC
Q 036770 858 QQLKLVMDSIIWAFRH 873 (1061)
Q Consensus 858 ~~~~~~~~~i~~~~~~ 873 (1061)
+.++.++..+..++..
T Consensus 719 ~~l~~~~~~l~~~~~~ 734 (861)
T d2bpta1 719 PYLNDIMALCVAAQNT 734 (861)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 2455555555555544
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.3e-22 Score=259.46 Aligned_cols=594 Identities=12% Similarity=0.133 Sum_probs=328.6
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCC-ChHHHHHHHHHHHHHHhcccCC------CC
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSK-NLNTKFFALQVLEGVIKYRWNA------LP 86 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~-~~~~rffaa~~L~~~I~~~w~~------l~ 86 (1061)
|++++.+++.. +.+|+.|++|++.|++++++|+.+..+.+++.+.+ +..+|..|+..||+.|+++|.. +|
T Consensus 3 d~~~l~~ll~~---s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~ 79 (959)
T d1wa5c_ 3 DLETVAKFLAE---SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79 (959)
T ss_dssp HHHHHHHHHHH---TTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred cHHHHHHHHHH---CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCC
Confidence 55666666555 34666899999999999999999999999997655 5689999999999999999964 99
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHH
Q 036770 87 VEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLL 165 (1061)
Q Consensus 87 ~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l 165 (1061)
+++|..||+.+++.+.+ + +..+|++++.+++.|+.++||+.||++++.+++.++++ ......+|.+|..+
T Consensus 80 ~e~k~~Ik~~ll~~l~~--~-------~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i 150 (959)
T d1wa5c_ 80 ANNVELIKKEIVPLMIS--L-------PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSI 150 (959)
T ss_dssp HHHHHHHHHHHHHHHHH--S-------CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--C-------cHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999998864 2 24589999999999999999999999999999999875 45677789999999
Q ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhC
Q 036770 166 SEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFF 245 (1061)
Q Consensus 166 ~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L 245 (1061)
+++........-.......+.+.+...+..++..+...+..... ...++.++..++.
T Consensus 151 ~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~-------------------- 207 (959)
T d1wa5c_ 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANEN---NKASLNILFDVLL-------------------- 207 (959)
T ss_dssp HGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHH--------------------
T ss_pred HHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHH--------------------
Confidence 88753211111111111222333333333333333333322211 0111111111110
Q ss_pred CCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChh-hhhc-CCCcchHHHHHHHHHHHHHHHHH
Q 036770 246 PMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIP-EAYA-HGNSEEQAFIQNLALFFTSFFKF 323 (1061)
Q Consensus 246 ~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~-~~~~-~~~~~d~~~~~~l~~l~~~~~~~ 323 (1061)
.+++++..+.....+..+.+ .+..++..+..++....... .... ............++.++..+.+.
T Consensus 208 -------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 276 (959)
T d1wa5c_ 208 -------VLIKLYYDFNCQDIPEFFED----NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTR 276 (959)
T ss_dssp -------HHHHHHHHHHSSCCCHHHHH----THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhcchHHHHH----HHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111100000 00001111111111000000 0000 00001112334455666665555
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhh
Q 036770 324 HIRVLESTQENISALLMGLEYLINISYV-DETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGI 402 (1061)
Q Consensus 324 ~~~ile~~~~~~~~~~~~l~~ll~~~~~-~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~ 402 (1061)
+...+.. .....+....+++...... ..+++...+++||..+.+......
T Consensus 277 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--------------------------- 327 (959)
T d1wa5c_ 277 YEDVFGP--MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE--------------------------- 327 (959)
T ss_dssp CHHHHHH--HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG---------------------------
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHH---------------------------
Confidence 4333321 1111222222333333222 245677889999998775321100
Q ss_pred hhhhhhhhhhhHHhhHHHHHHHH-HhhCCC-ccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHH
Q 036770 403 GAQLLQRRQLYAVPLSKLRMLMI-CRMAKP-EEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480 (1061)
Q Consensus 403 ~~~~~~~~~~~~~~l~~L~~~li-~km~~p-~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i 480 (1061)
...-.+.+..++..++ ..+... ++...|++|..+..++...+.+....+......+..++...++.+...+
T Consensus 328 -------~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~ 400 (959)
T d1wa5c_ 328 -------IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIF 400 (959)
T ss_dssp -------GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred -------HHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHH
Confidence 0000233444444333 344443 3444466665555555544444444455566667777766666665555
Q ss_pred HHHHHhhc----cCCccccchhhHHHHHHHhhhCC--CChh---------HHhHHHHHHHHHHHHhhhhhcCCcchHHHH
Q 036770 481 LKKLSKQL----SGEDWTWNNLNTLCWAIGSISGS--MMEE---------QENRFLVMVIRDLLNLCEMTKGKDNKAVIA 545 (1061)
Q Consensus 481 ~~~L~~~~----~~~~~~w~~le~~~~algsis~~--~~~~---------~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~ 545 (1061)
.+.+...+ .....+|...+++++++|+++.. .... .-.+++...+...+.... .+...++
T Consensus 401 ~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~-----~~~~~lr 475 (959)
T d1wa5c_ 401 LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN-----IPHIILR 475 (959)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSS-----CSCHHHH
T ss_pred HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCC-----CchHHHH
Confidence 55444332 34456899999999999998732 1100 012333333333333222 2334455
Q ss_pred HhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc---cccCCCchHHHHHHHhH
Q 036770 546 SNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI---VQVGENEPFVSELLSGL 622 (1061)
Q Consensus 546 s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~---~~~~e~~p~l~~il~~l 622 (1061)
..+++++|+|+.++. +++++.+++.++.++.++++.|+..||.++.+++..+...... .......||+..+++.+
T Consensus 476 ~~~~~~i~~~~~~~~--~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L 553 (959)
T d1wa5c_ 476 VDAIKYIYTFRNQLT--KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNL 553 (959)
T ss_dssp HHHHHHHHHTGGGSC--HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc--HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHH
Confidence 558889999999864 5678899999999998888999999999999999765532211 11223457888888777
Q ss_pred HHhhhcCCc-ch----HHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHh
Q 036770 623 ATTVADLEP-HQ----IHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQ 697 (1061)
Q Consensus 623 ~~~~~~l~~-~~----~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~ 697 (1061)
-........ .. ...+.++++.++...++.- ..+...++..+...|+.. ..++ .++. ....+++
T Consensus 554 ~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~--~~~~~~i~~~l~~~~~~~----~~~~---~~~~---~~~~~~e 621 (959)
T d1wa5c_ 554 IALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI--QPLFPQLLAQFIEIVTIM----AKNP---SNPR---FTHYTFE 621 (959)
T ss_dssp HHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT--GGGHHHHHHHHHHHHHHH----TTSC---CCHH---HHHHHHH
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----hcCc---cchH---HHHHHHH
Confidence 654433222 11 2358888888887766432 235555555555555432 2222 2332 3455666
Q ss_pred HHHHHHhhhCh
Q 036770 698 TNTSVASALGT 708 (1061)
Q Consensus 698 ~~~~i~~~~~~ 708 (1061)
+++.+.+..++
T Consensus 622 ~l~~l~~~~~~ 632 (959)
T d1wa5c_ 622 SIGAILNYTQR 632 (959)
T ss_dssp HHHHHHHTSCG
T ss_pred HHHHHHHhcCc
Confidence 76666665543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.7e-23 Score=260.01 Aligned_cols=683 Identities=14% Similarity=0.171 Sum_probs=418.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcC--cccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcc-----------cC
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNN--PDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYR-----------WN 83 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s--~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~-----------w~ 83 (1061)
+.++++...+| |++.|++|+++|++++++ |+....+..++.+. .+.++|+.|+..|++.|.++ |.
T Consensus 3 l~~~L~~~~s~-d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~ 81 (876)
T d1qgra_ 3 LITILEKTVSP-DRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp HHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-CHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccc
Confidence 45677777776 777999999999999987 77777778888554 46789999999999999866 45
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHccCC---hhHHHHHH
Q 036770 84 ALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWP-ARWRSFIPDLVAAAKTS---ETICENCM 159 (1061)
Q Consensus 84 ~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p-~~Wp~~i~~l~~~~~~~---~~~~~~~L 159 (1061)
.++++.|..||+.+++.+.+ .. . +++++|.+++.|+..+|| +.||++++.+++.+.++ ...+..+|
T Consensus 82 ~i~~~~k~~ik~~ll~~l~~--~~-~-------~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l 151 (876)
T d1qgra_ 82 AIDANARREVKNYVLHTLGT--ET-Y-------RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT--CC-S-------SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcC--Cc-H-------HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 89999999999999998753 11 1 346689999999999999 57999999999987543 45677889
Q ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHhcccccCcchhc---ch
Q 036770 160 AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS-QRTDLIRATLSTLHAFLSWIPLGYIF---ES 235 (1061)
Q Consensus 160 ~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~-~~~~l~~~~L~~l~~~l~wi~~~~i~---~~ 235 (1061)
.+|..+++++.. +.+....+.++..+.+.+... .+.++...+++++.+++..++..... .+
T Consensus 152 ~~l~~i~~~~~~---------------~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (876)
T d1qgra_ 152 EAIGYICQDIDP---------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (876)
T ss_dssp HHHHHHHHHSCH---------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH
T ss_pred HHHHHHHHHCCH---------------HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 999999887522 112234566777777777653 45678889999999988765543221 13
Q ss_pred hhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHH
Q 036770 236 PLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNL 313 (1061)
Q Consensus 236 ~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l 313 (1061)
.+++.+...+. +++.+..+++||..++...+. .....+..
T Consensus 217 ~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~-~~~~~~~~------------------------------------- 258 (876)
T d1qgra_ 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YMETYMGP------------------------------------- 258 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG-GCHHHHTT-------------------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHH-HHHHHHHH-------------------------------------
Confidence 45555555554 345677788888777764211 00000000
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccC-CCcccccccCCCCC
Q 036770 314 ALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNL-ENPAVTANMMGLPM 392 (1061)
Q Consensus 314 ~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~-~~~~~~~~~~g~~~ 392 (1061)
.+ ..++......+++++...+++||..+.+...+..... .......+
T Consensus 259 -----------------------~l---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------ 306 (876)
T d1qgra_ 259 -----------------------AL---FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP------ 306 (876)
T ss_dssp -----------------------TH---HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC------
T ss_pred -----------------------HH---HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhh------
Confidence 00 0111111223344555666777777665432211000 00000000
Q ss_pred CCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCC
Q 036770 393 PLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLD 472 (1061)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~ 472 (1061)
+.. ........++..+.+.+..-+...++. ++++ ++..+.....++..++...
T Consensus 307 ---~~~---------~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~------------~~~~~~~a~~~l~~l~~~~ 359 (876)
T d1qgra_ 307 ---PEH---------TSKFYAKGALQYLVPILTQTLTKQDEN---DDDD------------DWNPCKAAGVCLMLLATCC 359 (876)
T ss_dssp ---CSS---------CCCCHHHHHHHHHHHHHHHHTTCCCSS---CCTT------------CCCHHHHHHHHHHHHHHHH
T ss_pred ---HHH---------HHHHHHHHHHHHHHHhhHHHHHhcccc---cccc------------cchHHHHHHHHHHHHHHHh
Confidence 000 011122445566666666666544321 1111 1112334455666666555
Q ss_pred HHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHh
Q 036770 473 HEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVV 552 (1061)
Q Consensus 473 ~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~i 552 (1061)
+..+...+.+.+.+.+.+ .+|+..+++++++|++++.........++.++++.+.....+ +.+.++...++++
T Consensus 360 ~~~~~~~~~~~i~~~l~~--~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d-----~~~~vr~~a~~~l 432 (876)
T d1qgra_ 360 EDDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-----PSVVVRDTAAWTV 432 (876)
T ss_dssp GGGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-----SSHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHhhcc--chHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC-----CccHHHHHHHHHH
Confidence 667777777877776543 579999999999999998776665678888888888776653 4456666688999
Q ss_pred ccchHHHHH---hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc------cccCCCchHHHHHHHhHH
Q 036770 553 GQYPRFLRA---HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI------VQVGENEPFVSELLSGLA 623 (1061)
Q Consensus 553 g~y~~~l~~---~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~------~~~~e~~p~l~~il~~l~ 623 (1061)
|++++++.. ++.+++.+++.++..+.+ ++.|+.+||.++..++..+...... .......+++..++..+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~ 511 (876)
T d1qgra_ 433 GRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLL 511 (876)
T ss_dssp HHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHH
T ss_pred HHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999998753 356788999999987765 6899999999999999887642211 111234567788887776
Q ss_pred HhhhcCC---cchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHH-HHHHHhHH
Q 036770 624 TTVADLE---PHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRT-VLNILQTN 699 (1061)
Q Consensus 624 ~~~~~l~---~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~il~~~ 699 (1061)
....... ...+...+++++.++...+... ...+..++..+...+...+...... ....+...... ...++.++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l 588 (876)
T d1qgra_ 512 ETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC--YPAVQKTTLVIMERLQQVLQMESHI-QSTSDRIQFNDLQSLLCATL 588 (876)
T ss_dssp HHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTT--HHHHHHHHHHHHHHHHHHHTTTTSC-CSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccHhHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHhhhh-cchhhhHHHHHHHHHHHHHH
Confidence 6554332 3346667888888887766542 1344444444444444433221110 00011111111 12222233
Q ss_pred HHHHhhhChhhHHH-HHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhh
Q 036770 700 TSVASALGTFFLSQ-ISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK 778 (1061)
Q Consensus 700 ~~i~~~~~~~f~~~-~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~ 778 (1061)
..+.+.++....++ .+.++ ..+...+....
T Consensus 589 ~~~~~~~~~~~~~~~~~~i~------------------------------------------~~l~~~l~~~~------- 619 (876)
T d1qgra_ 589 QNVLRKVQHQDALQISDVVM------------------------------------------ASLLRMFQSTA------- 619 (876)
T ss_dssp HHHHTTSCHHHHHTTHHHHH------------------------------------------HHHHHHC-----------
T ss_pred HHHHHHcchhhhhhhHHHHH------------------------------------------HHHHHHHhcCC-------
Confidence 33333333221111 11111 11111111000
Q ss_pred cCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChH
Q 036770 779 QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQ 858 (1061)
Q Consensus 779 ~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~ 858 (1061)
.... -...++..++.++..++..+.++++.++..++. .+++ .+.|+++...+.+++.+...+...+. +
T Consensus 620 -~~~~-~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~----~l~~--~~~~~v~~~a~~~l~~l~~~~~~~~~----~ 687 (876)
T d1qgra_ 620 -GSGG-VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI----GLKN--YAEYQVCLAAVGLVGDLCRALQSNII----P 687 (876)
T ss_dssp --CCH-HHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH----HHHH--CTTHHHHHHHHHHHHHHHHHHGGGGH----H
T ss_pred -CCcc-hHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHH----HHhC--CCcHHHHHHHHHHHHHHHHHhHHhhh----h
Confidence 0011 123578888889998998888888887766553 3333 35689999999999999887766543 2
Q ss_pred HHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHhccc
Q 036770 859 QLKLVMDSIIWAFRHT--ERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 859 ~~~~~~~~i~~~~~~~--~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
....++..+.-.+..+ ++++...++..+.+++...+.
T Consensus 688 ~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~ 726 (876)
T d1qgra_ 688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhH
Confidence 4566666666666543 567777888888888877763
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3.5e-17 Score=188.99 Aligned_cols=429 Identities=17% Similarity=0.235 Sum_probs=271.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcC--cccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcc-----------cC
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNN--PDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYR-----------WN 83 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s--~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~-----------w~ 83 (1061)
+.+++..+.+| |++.|++|+++|+++.++ |+.+..+..++.++ .+.++|.+|+..|++.+.+. |.
T Consensus 2 l~~il~~~~s~-d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~ 80 (458)
T d1ibrb_ 2 LITILEKTVSP-DRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 80 (458)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-CHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhc
Confidence 56777888877 788999999999999875 68888888888654 46789999999999999765 56
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccCC---hhHHHHHH
Q 036770 84 ALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKTS---ETICENCM 159 (1061)
Q Consensus 84 ~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~~---~~~~~~~L 159 (1061)
.++++.+..+|+.+++.+... .. +++.++.+++.++..++|. .||++++.+++.+.++ .......+
T Consensus 81 ~l~~~~~~~i~~~ll~~~~~~----~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l 150 (458)
T d1ibrb_ 81 AIDANARREVKNYVLQTLGTE----TY------RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 150 (458)
T ss_dssp TSCHHHHHHHHHHHHHHTTCC----CS------SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccCCC----cH------HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHH
Confidence 899999999999999876431 11 3456789999999999885 7999999999987643 34566788
Q ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHhcccccCcchh---cch
Q 036770 160 AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS-QRTDLIRATLSTLHAFLSWIPLGYI---FES 235 (1061)
Q Consensus 160 ~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~-~~~~l~~~~L~~l~~~l~wi~~~~i---~~~ 235 (1061)
.++..+.+.+... .. ......++..+...+... .+..++..+++++..++...+.... ..+
T Consensus 151 ~~l~~~~~~~~~~---~~------------~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~ 215 (458)
T d1ibrb_ 151 EAIGYICQDIDPE---QL------------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 215 (458)
T ss_dssp HHHHHHHHHSCGG---GT------------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH
T ss_pred HHHHHHHhhccch---hh------------hhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 8888888765321 11 114456667777777654 4567889999999988875443221 113
Q ss_pred hhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHH
Q 036770 236 PLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNL 313 (1061)
Q Consensus 236 ~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l 313 (1061)
.+.+.+...+. +++++..+++||.+++...+. .+.. .+ ..
T Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~-~~~~---------------~l------~~---------------- 257 (458)
T d1ibrb_ 216 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ-YMET---------------YM------GP---------------- 257 (458)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-GCTT---------------TT------TT----------------
T ss_pred HhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH-HHHH---------------HH------HH----------------
Confidence 34455555555 345677777777776653210 0000 00 00
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCC
Q 036770 314 ALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMP 393 (1061)
Q Consensus 314 ~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~ 393 (1061)
.+. .++......+++++...+++||..+.+.............. .. ..
T Consensus 258 -----------------------~~~---~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~-~~---~~-- 305 (458)
T d1ibrb_ 258 -----------------------ALF---AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE-QG---RP-- 305 (458)
T ss_dssp -----------------------THH---HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC-SS---SC--
T ss_pred -----------------------HHH---HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-hh---hH--
Confidence 000 00111112234466667788888877654322111000000 00 00
Q ss_pred CCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCH
Q 036770 394 LLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDH 473 (1061)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~ 473 (1061)
+... ........+..+.+.+..-+...++ .++|+.. ..+.....++..++...+
T Consensus 306 --~~~~---------~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~------------~~~~~a~~~l~~l~~~~~ 359 (458)
T d1ibrb_ 306 --PEHT---------SKFYAKGALQYLVPILTQTLTKQDE---NDDDDDW------------NPCKAAGVCLMLLATCCE 359 (458)
T ss_dssp --SSCC---------CCCHHHHHHHHHHHHHHHHTTCCCS---SCCTTCC------------SHHHHHHHHHHHHHHHTT
T ss_pred --HHHH---------HHHHHHHHHHHHhhhHHhhhhcchh---hhccccc------------cHHHHHHHHHHHHHHhcc
Confidence 0000 1111234455566665554443332 1112111 123344566666666556
Q ss_pred HhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhc
Q 036770 474 EDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVG 553 (1061)
Q Consensus 474 ~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig 553 (1061)
+.+...+.+.+.+.+++ .+|+..+++++++|++++...++.-+.+++.+++.++....+ +.+.|+...++++|
T Consensus 360 ~~~~~~l~~~i~~~l~s--~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d-----~~~~VR~~a~~~l~ 432 (458)
T d1ibrb_ 360 DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-----PSVVVRDTAAWTVG 432 (458)
T ss_dssp TTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-----SCHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Confidence 67777777777766543 479999999999999997543333356788888888876654 34455666889999
Q ss_pred cchHHHHH---hHHHHHHHHHHHHH
Q 036770 554 QYPRFLRA---HWKFLKTVVNKLFE 575 (1061)
Q Consensus 554 ~y~~~l~~---~~~~L~~vl~~L~~ 575 (1061)
++.+|+.. |..+++++++.|++
T Consensus 433 ~i~~~~~~~~~~~~~l~~ll~~ll~ 457 (458)
T d1ibrb_ 433 RICELLPEAAINDVYLAPLLQCLIE 457 (458)
T ss_dssp HHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHhhcccchhhHHHHHHHHHhC
Confidence 99999854 56789999988875
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=9.6e-07 Score=113.43 Aligned_cols=636 Identities=12% Similarity=0.101 Sum_probs=325.2
Q ss_pred cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccch
Q 036770 60 NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRS 139 (1061)
Q Consensus 60 ~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~ 139 (1061)
++.|+..||.|+.-|.+.++..+..++++....+-+.++..+ ++. +.-|++....+++.++.+.-+..++.
T Consensus 13 ~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L----~D~-----~~~Vq~~A~k~l~~l~~~~~~~~~~~ 83 (1207)
T d1u6gc_ 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL----EDK-----NGEVQNLAVKCLGPLVSKVKEYQVET 83 (1207)
T ss_dssp TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT----TCS-----SHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHh----CCC-----CHHHHHHHHHHHHHHHHhCcHhhHHH
Confidence 467899999999999999998888888776655555555544 333 24578888899999988875567788
Q ss_pred hHHHHHHHccC-ChhHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Q 036770 140 FIPDLVAAAKT-SETICENCMAILKLLSEEVFDFSR-GEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATL 217 (1061)
Q Consensus 140 ~i~~l~~~~~~-~~~~~~~~L~iL~~l~EEv~~~~~-~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L 217 (1061)
+++.++..+.. +..........|+.+..++..... ..+. ....+.+...+...+.+..+..+...++
T Consensus 84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~v~~~al 152 (1207)
T d1u6gc_ 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA-----------ANVCKKITGRLTSAIAKQEDVSVQLEAL 152 (1207)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH-----------HHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhH-----------HHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 88888887654 344456666777877777643211 1111 1234556666666666666777888899
Q ss_pred HHHHhcccccCcch-hcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCC
Q 036770 218 STLHAFLSWIPLGY-IFESPLLETLLKFFPM--PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTN 294 (1061)
Q Consensus 218 ~~l~~~l~wi~~~~-i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~ 294 (1061)
.++...++..+... -....+++.+...+.+ +.+|..|+.||..++..-....+. .++...+..+..- ....
T Consensus 153 ~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~----~~~~~ll~~l~~~--~~~~ 226 (1207)
T d1u6gc_ 153 DIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV----DLIEHLLSELSKN--DSMS 226 (1207)
T ss_dssp HHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CT----THHHHHHHHHHHT--CSSC
T ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHccC--CCHH
Confidence 99988877554321 1124677777766665 457899999999988642211112 2222233322110 0000
Q ss_pred hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHH
Q 036770 295 IPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDA 374 (1061)
Q Consensus 295 l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~ 374 (1061)
. .+....++..++......+.. ....+ +..++.....+++++-+.++..+..+....
T Consensus 227 ~--------------~~~~~~~l~~l~~~~~~~~~~--~l~~i----~~~l~~~l~~~~~~~r~~al~~l~~l~~~~--- 283 (1207)
T d1u6gc_ 227 T--------------TRTYIQCIAAISRQAGHRIGE--YLEKI----IPLVVKFCNVDDDELREYCIQAFESFVRRC--- 283 (1207)
T ss_dssp S--------------CTTHHHHHHHHHHHSSGGGTT--SCTTH----HHHHHHHHSSCCTTTHHHHHHHHHHHHHCT---
T ss_pred H--------------HHHHHHHHHHHHHHcchhhHH--HHHHH----HHHHHHHhcCccHHHHHHHHHHHHHHHHhC---
Confidence 0 011223333333332222211 11122 355666666777777777777766665321
Q ss_pred hccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhh
Q 036770 375 HNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDV 454 (1061)
Q Consensus 375 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~ 454 (1061)
+. ...+++.+++..+.+.+.+.++.... .++.+ ......+.
T Consensus 284 ----~~-------------------------------~~~~~~~~ii~~~l~~l~~dp~~~~~-~~~~~-~~~~~~~~-- 324 (1207)
T d1u6gc_ 284 ----PK-------------------------------EVYPHVSTIINICLKYLTYDPNYNYD-DEDED-ENAMDADG-- 324 (1207)
T ss_dssp ----TC-------------------------------CCHHHHHHHHHHHTTCCCCC-----------------------
T ss_pred ----hh-------------------------------hhhhhHHHHHHHHHHHHhcCcchhhh-hHHHH-Hhhhhhhc--
Confidence 10 12445666676776666665432210 00000 00000000
Q ss_pred HHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhh
Q 036770 455 LVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEM 534 (1061)
Q Consensus 455 ~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~ 534 (1061)
.. . ... ..+.... .....+|....+++.+++++.....+ ....+...+++.+......
T Consensus 325 -------~~---~-----~~~----~~~~~~~--~~~d~s~~vR~~a~~~L~~l~~~~~~-~l~~~~~~~~~~L~~~l~d 382 (1207)
T d1u6gc_ 325 -------GD---D-----DDQ----GSDDEYS--DDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRFKE 382 (1207)
T ss_dssp --------------------------------------CTTHHHHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTTSC
T ss_pred -------cc---h-----hhh----hHHHHHh--hhhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhcC
Confidence 00 0 000 0000000 11345799999999999998876543 2345666677766654432
Q ss_pred hcCCcchHHHHHhHHHHhc---cchHHH-------------HHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 535 TKGKDNKAVIASNIMYVVG---QYPRFL-------------RAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 535 ~~~~~~k~~v~s~i~~~ig---~y~~~l-------------~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
. ....+..+..++..++. ....+. ..-.++++.+++.+...+.+.++.++..|..++..++..
T Consensus 383 ~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~ 461 (1207)
T d1u6gc_ 383 R-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 461 (1207)
T ss_dssp S-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 1 11111111111111111 111111 111245566777777777777889999999999999987
Q ss_pred hhhcccccccCCCchHHHHHHHhHHHhhhcCCc--chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHH
Q 036770 599 CKRKFVIVQVGENEPFVSELLSGLATTVADLEP--HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQA 676 (1061)
Q Consensus 599 c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~--~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~ 676 (1061)
....+. +++..++..+.....+-.. ..+.....+++.++...+.... ..++..+...... .+
T Consensus 462 ~~~~l~--------~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~~~~l~~~~~~----~~--- 525 (1207)
T d1u6gc_ 462 LPGALT--------QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVF-HPHVQALVPPVVA----CV--- 525 (1207)
T ss_dssp STTTTG--------GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGG-HHHHTTTHHHHHH----HH---
T ss_pred cchHHH--------HhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHH-HHHHHhhhhhHHH----HH---
Confidence 766554 3777777666544332222 2234445555665554443221 1233322221111 11
Q ss_pred hccccccCCHHHHHHHHHHHhHHHHHHhhhC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhh
Q 036770 677 RQSVDFLKDQDVIRTVLNILQTNTSVASALG-------TFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYV 749 (1061)
Q Consensus 677 ~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~-------~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~ 749 (1061)
.+ ...... ...+++...+++.++ ..+.+++..
T Consensus 526 -~~----~~~~i~---~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~--------------------------------- 564 (1207)
T d1u6gc_ 526 -GD----PFYKIT---SEALLVTQQLVKVIRPLDQPSSFDATPYIKD--------------------------------- 564 (1207)
T ss_dssp -TC----SSHHHH---HHHHHHHHHHHHHHCCSSSCCCCCCHHHHHH---------------------------------
T ss_pred -cc----ccHHHH---HHHHHHHHHHHHHhhhhccchhhhhHHHHHH---------------------------------
Confidence 11 111111 111111111111111 011111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcc-hHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccC
Q 036770 750 KLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDAR-ESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFE 828 (1061)
Q Consensus 750 ~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r-~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~ 828 (1061)
++...+.... .+..... ....+.+++.++...+....+.++.++..+... +
T Consensus 565 ------------l~~~~~~~l~-------~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~----l----- 616 (1207)
T d1u6gc_ 565 ------------LFTCTIKRLK-------AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLER----L----- 616 (1207)
T ss_dssp ------------HHHHHHHHHS-------CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHH----T-----
T ss_pred ------------HHHHHHHHHH-------hcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----h-----
Confidence 1111111110 0111111 123678888888888887777777666555433 1
Q ss_pred CChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcc
Q 036770 829 DYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 829 ~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~ 894 (1061)
.++..|......+..+...+...- -...+..++..+...+...++.+...++..+..++.+..
T Consensus 617 ~~~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 679 (1207)
T d1u6gc_ 617 KNEITRLTTVKALTLIAGSPLKID---LRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 679 (1207)
T ss_dssp TSSSHHHHHHHHHHHHTTCSSCCC---CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred cchhhHHHHHHHHHHHHHhccchh---HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcc
Confidence 223355555555555443322111 123566677777778888888888888888888887764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=4.8e-05 Score=92.75 Aligned_cols=379 Identities=9% Similarity=0.080 Sum_probs=193.8
Q ss_pred ccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH--HHhHHHHHHH
Q 036770 492 DWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL--RAHWKFLKTV 569 (1061)
Q Consensus 492 ~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l--~~~~~~L~~v 569 (1061)
..+|....++..+++.++..... ..++.+++.+...... .+.+.+.++ ++ .+|...+.. .....+++.+
T Consensus 342 ~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~a-~~-~l~~i~~~~~~~~~~~~l~~~ 412 (861)
T d2bpta1 342 DDDWNVSMSAGACLQLFAQNCGN----HILEPVLEFVEQNITA---DNWRNREAA-VM-AFGSIMDGPDKVQRTYYVHQA 412 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTC---SSHHHHHHH-HH-HHHHTSSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhcch----hhhhhhcchhhhhhhh---HHHHHHHHH-HH-HHHHHHhhcchhhHHHHHHHH
Confidence 34577767777777777665432 2333333333222221 123333222 22 333322211 1124578888
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCC
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAES 649 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~ 649 (1061)
++.++..+.++++.|+..|++++.++++.....+... .++..++..+...... .+..+.....++..++....
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~------~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~ 485 (861)
T d2bpta1 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ------QHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT------TTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhH------HhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhh
Confidence 8888888888899999999999999999877655431 2455555554432221 22222333333333332211
Q ss_pred CH--HHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHH
Q 036770 650 DV--QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKM 727 (1061)
Q Consensus 650 ~~--~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~ 727 (1061)
.. .....++..++.. ++....... .+.. .....+.++..+.+..+..+.+....+.+.+.+....
T Consensus 486 ~~~~~~~~~~~~~~~~~-------l~~~~~~~~---~~~~---~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~ 552 (861)
T d2bpta1 486 EATPSPIYNFYPALVDG-------LIGAANRID---NEFN---ARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQ 552 (861)
T ss_dssp SSSSCGGGGGHHHHHHH-------HHHHHTCSC---CGGG---HHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhHHHhhHHHH-------HHHHHhhhh---hhHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0001122222221 121111100 1111 1233445556666777777777777776665544332
Q ss_pred HHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCC-----hhhhhh------cCCCCcc-hHHHHHHHHH
Q 036770 728 YSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAED-----QPQIGK------QNVPDAR-ESEVLSLFAT 795 (1061)
Q Consensus 728 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~-----~~~l~~------~~~~~~r-~~~~L~l~~~ 795 (1061)
.- ...... ...........++..+...+...+..... ...+.. ...+... ...++.+++.
T Consensus 553 ~~-------~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~ 624 (861)
T d2bpta1 553 TM-------SVDENQ-LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HT-------TSCGGG-CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HH-------HHHhhh-hhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHH
Confidence 21 110000 11111122223333344444444333211 011100 0111111 2357888999
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcC--
Q 036770 796 IINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRH-- 873 (1061)
Q Consensus 796 li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~-- 873 (1061)
++..+|..+.++++.++..+..+. + ...++++..-+.+++.+...+...+. +....+++.+.-.++.
T Consensus 625 l~~~~~~~~~~~l~~i~p~l~~~l----~---~~~~~v~~~a~~~l~~i~~~~~~~~~----~~~~~i~~~L~~~l~~~~ 693 (861)
T d2bpta1 625 LAASLGKGFEKYLETFSPYLLKAL----N---QVDSPVSITAVGFIADISNSLEEDFR----RYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHH----H---CTTSHHHHHHHHHHHHHHHHTGGGGH----HHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhHHHHHHHHHHhhHHHHHh----C---CCCHHHHHHHHHHHHHHHHHhHHHhH----hhHHHHHHHHHHHhCCCC
Confidence 999999888777777776665442 2 24578999999999998887655442 2456667766655554
Q ss_pred CChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 036770 874 TERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHK 924 (1061)
Q Consensus 874 ~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~~~~ 924 (1061)
.++++-..++.++.+++...+. . +..|+..+++.+...+....+.
T Consensus 694 ~~~~~k~~~~~~l~~i~~~~~~-~-----~~~~l~~~~~~l~~~~~~~~~~ 738 (861)
T d2bpta1 694 ARRELKPAVLSVFGDIASNIGA-D-----FIPYLNDIMALCVAAQNTKPEN 738 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGG-G-----GHHHHHHHHHHHHHHHTCCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHhCcCCCc
Confidence 4567777888888888877652 1 1334455555555555444433
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=3.4e-05 Score=90.26 Aligned_cols=489 Identities=10% Similarity=0.028 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccH-------HHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCH
Q 036770 15 VALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMW-------LQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPV 87 (1061)
Q Consensus 15 i~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw-------~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~ 87 (1061)
+..+...+..+....++..|..|-+.|.++-+..+.- +.+..+. .+.....|-.|+.++..... ..++
T Consensus 85 ~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~-~~~~~~~r~~a~~ll~~~~~----~~~~ 159 (588)
T d1b3ua_ 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLA-GGDWFTSRTSACGLFSVCYP----RVSS 159 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHH-TCSSHHHHHHHGGGHHHHTT----TSCH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHH----HhhH
Confidence 4445556666666667888999999998887643321 2222333 44556778888877766543 4666
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHccCC-hhHHHHHHHHHHHH
Q 036770 88 EQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWP-ARWRSFIPDLVAAAKTS-ETICENCMAILKLL 165 (1061)
Q Consensus 88 e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p-~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l 165 (1061)
+.+..++..+.+ ...++ ...+|...+.++..++...-+ ..|+..++-+....+.+ ...+...+..+..+
T Consensus 160 ~~~~~l~~~~~~----l~~D~-----~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i 230 (588)
T d1b3ua_ 160 AVKAELRQYFRN----LCSDD-----TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230 (588)
T ss_dssp HHHHHHHHHHHH----HHTCS-----CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhccC-----CHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHh
Confidence 655555554444 33443 256888899999998886532 25777777777766543 44556667766666
Q ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhC
Q 036770 166 SEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFF 245 (1061)
Q Consensus 166 ~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L 245 (1061)
.+-..+ . . ....++..+...++ ..+..++..+.+++......++.+ ...+.+++.+...+
T Consensus 231 ~~~~~~---~----~-----------~~~~i~~~l~~~~~-D~~~~Vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~ll 290 (588)
T d1b3ua_ 231 AQLLPQ---E----D-----------LEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQNLM 290 (588)
T ss_dssp HHHSCH---H----H-----------HHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHHHH
T ss_pred hccCCH---H----H-----------HHHHHHHHHHHhcc-cccHHHHHHHHHhHHHHHHHhhhh-hhhhhhhHHHHHHH
Confidence 543211 0 0 11234455555554 346678888889988877655543 33356788787777
Q ss_pred CC--ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHH
Q 036770 246 PM--PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKF 323 (1061)
Q Consensus 246 ~~--~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~ 323 (1061)
.+ +++|..|+.++..++..-........ .+..++..+..... +.+......++..+..++..
T Consensus 291 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~---~~~~i~~~l~~~~~-------------d~~~~vr~~~~~~l~~~~~~ 354 (588)
T d1b3ua_ 291 KDCEAEVRAAASHKVKEFCENLSADCRENV---IMSQILPCIKELVS-------------DANQHVKSALASVIMGLSPI 354 (588)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTSCTTTHHHH---HHHTHHHHHHHHHT-------------CSCHHHHHHHHTTGGGGHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHHhhc-------------CCChHHHHHHHHHHhhhhhc
Confidence 65 46899999999988864221111111 11222222222111 11222333333333222211
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhh
Q 036770 324 HIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIG 403 (1061)
Q Consensus 324 ~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~ 403 (1061)
+... ......+..+..+...++.++...++.-+..+...+.
T Consensus 355 ----~~~~----~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~------------------------------- 395 (588)
T d1b3ua_ 355 ----LGKD----NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG------------------------------- 395 (588)
T ss_dssp ----HCHH----HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-------------------------------
T ss_pred ----cchh----HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc-------------------------------
Confidence 1100 0111112233333333444444443333333221100
Q ss_pred hhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHh-cCCHHhHHHHHHH
Q 036770 404 AQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLS-HLDHEDTEKQMLK 482 (1061)
Q Consensus 404 ~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~-~l~~~~~~~~i~~ 482 (1061)
...+...+++.+..-+..+ ...+|. ..-.++..++ .++.+.....+.+
T Consensus 396 ---------~~~~~~~ll~~l~~~~~d~----------~~~~r~------------~~~~~l~~l~~~~~~~~~~~~l~~ 444 (588)
T d1b3ua_ 396 ---------IRQLSQSLLPAIVELAEDA----------KWRVRL------------AIIEYMPLLAGQLGVEFFDEKLNS 444 (588)
T ss_dssp ---------HHHHHHHHHHHHHHHHTCS----------SHHHHH------------HHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred ---------hhhhhhHHHHHHHHHHhcc----------cHHHHH------------HHHHHHHHHHHHcChHhHHHHHHH
Confidence 0111223333333322211 111222 1112222221 1112222223333
Q ss_pred HHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh
Q 036770 483 KLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH 562 (1061)
Q Consensus 483 ~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~ 562 (1061)
.+...+. ...|...++++.++|.++..+.++ .....+++.+..+..+ ....++.+.+++++.....+...
T Consensus 445 ~l~~~l~--D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~~~-----~~~~~R~~~~~~l~~l~~~~~~~ 514 (588)
T d1b3ua_ 445 LCMAWLV--DHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGD-----PNYLHRMTTLFCINVLSEVCGQD 514 (588)
T ss_dssp HHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTC-----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcc--CCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHcChH
Confidence 3333332 235788899999999998766543 2234455655555443 23333333556777766665432
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHh
Q 036770 563 WKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVG 642 (1061)
Q Consensus 563 ~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig 642 (1061)
.+.+.+++.++..+.++.|.||..|+.++.+++....... +-..+...+.....+-+.+-+...-+|+.
T Consensus 515 -~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~----------~~~~i~~~l~~L~~D~d~dVr~~A~~al~ 583 (588)
T d1b3ua_ 515 -ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST----------LQSEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp -HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH----------HHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2445667777787888889999999999999876543322 11223333333344444445666666766
Q ss_pred hh
Q 036770 643 HM 644 (1061)
Q Consensus 643 ~l 644 (1061)
.+
T Consensus 584 ~l 585 (588)
T d1b3ua_ 584 VL 585 (588)
T ss_dssp HT
T ss_pred HH
Confidence 54
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2.1e-05 Score=97.25 Aligned_cols=353 Identities=12% Similarity=0.121 Sum_probs=202.3
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh-HHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFLKTVVN 571 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L~~vl~ 571 (1061)
.+.....++||++|.++..+.+...+.++..+++.++....+ ....++...++.++.+.+-.... .++++.+++
T Consensus 448 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d-----~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~ 522 (888)
T d1qbkb_ 448 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-----SNKRVQEAACSAFATLEEEACTELVPYLAYILD 522 (888)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSS-----SCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 355667889999999987654444456777788877765543 22344555666777666554332 347888888
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcC--CcchHHHHHHHHhhhhccCC
Q 036770 572 KLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL--EPHQIHTFYESVGHMIQAES 649 (1061)
Q Consensus 572 ~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l--~~~~~~~l~eaig~li~~~~ 649 (1061)
.+...+.....+....+..++..++..+...+.. .++++.++..+......+ +......++|+++.++....
T Consensus 523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~ 596 (888)
T d1qbkb_ 523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK------PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQ 596 (888)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCS------HHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHST
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccc------hHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhH
Confidence 8888777666777888899999999998877653 246777766665544433 23446678999999988877
Q ss_pred CHHH--HHHHHHHHhhchHHHHHHHHHHHhcc-ccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH--HHHHHHHH
Q 036770 650 DVQK--REEYLQRLMLLPNQKWSEIIAQARQS-VDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV--IFLDMLNV 724 (1061)
Q Consensus 650 ~~~~--~~~~l~~Ll~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~--i~~~ll~~ 724 (1061)
..-. .....+.++..+...+.+.+...... .....+.+ .+...+.++.++++++|..+.+.+.. +.+.+...
T Consensus 597 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~ 673 (888)
T d1qbkb_ 597 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD---FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC 673 (888)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTH---HHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHH---HHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHH
Confidence 5321 12233333333333332222211111 11112322 24556667788888888777665432 22222221
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCC----C-----hhhhhhcCCCCc---chHHHHHH
Q 036770 725 YKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAE----D-----QPQIGKQNVPDA---RESEVLSL 792 (1061)
Q Consensus 725 y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~----~-----~~~l~~~~~~~~---r~~~~L~l 792 (1061)
.+.. .+. ++.....++......+. + ...+.+ +.... ........
T Consensus 674 l~~~-----------------~~~------vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~-~L~~~~~~v~~~a~~~ 729 (888)
T d1qbkb_ 674 MQDK-----------------MPE------VRQSSFALLGDLTKACFQHVKPCIADFMPILGT-NLNPEFISVCNNATWA 729 (888)
T ss_dssp HTCS-----------------SHH------HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHH-TCCGGGHHHHHHHHHH
T ss_pred hCCC-----------------ChH------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HhCcCCHHHHHHHHHH
Confidence 1110 010 11111111111111000 0 000110 11110 11236778
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhc
Q 036770 793 FATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFR 872 (1061)
Q Consensus 793 ~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 872 (1061)
++.++.+.|..+.++++.++..++ .++++ ....+.++.+-..-++++...||+.+.. .++.++...+.++.
T Consensus 730 ig~ia~~~~~~~~py~~~il~~L~----~il~~-~~~~~~v~~n~~~~lgrl~~~~p~~~~~----~l~~~~~~~~~~l~ 800 (888)
T d1qbkb_ 730 IGEISIQMGIEMQPYIPMVLHQLV----EIINR-PNTPKTLLENTAITIGRLGYVCPQEVAP----MLQQFIRPWCTSLR 800 (888)
T ss_dssp HHHHHHHTGGGGGGGSHHHHHHHH----HHHTC-TTCCHHHHHHHHHHHHHHHHHCHHHHGG----GGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH----HHHcC-CCccHHHHHHHHHHHHHHHHHCHHHHHh----hHHHHHHHHHHHhc
Confidence 889999999999999998887766 33443 2345568888889999999999987632 34455555555555
Q ss_pred C-CChhHHHHHHHHHHHHHHh
Q 036770 873 H-TERNIAETGLNLLLEMLKN 892 (1061)
Q Consensus 873 ~-~~~~i~~~~l~~l~~l~~~ 892 (1061)
+ .+.+-.+.++..+..++..
T Consensus 801 ~~~d~~ek~~~~~g~~~~i~~ 821 (888)
T d1qbkb_ 801 NIRDNEEKDSAFRGICTMISV 821 (888)
T ss_dssp TSCCSHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHH
Confidence 5 3444456677777777654
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=0.0004 Score=80.70 Aligned_cols=153 Identities=9% Similarity=0.062 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccch
Q 036770 477 EKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYP 556 (1061)
Q Consensus 477 ~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~ 556 (1061)
...+++.+.... ...+|+..++++-+++.+++.+..+.-. ..+.+.++.+... +...++......+|+..
T Consensus 400 ~~~ll~~l~~~~--~d~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~D-----~~~~VR~~A~~~L~~l~ 469 (588)
T d1b3ua_ 400 SQSLLPAIVELA--EDAKWRVRLAIIEYMPLLAGQLGVEFFD---EKLNSLCMAWLVD-----HVYAIREAATSNLKKLV 469 (588)
T ss_dssp HHHHHHHHHHHH--TCSSHHHHHHHHHHHHHHHHHHCGGGCC---HHHHHHHHHGGGC-----SSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHcChHhHH---HHHHHHHHhhccC-----CchhHHHHHHHHHHHHH
Confidence 334444444433 2358999999999999988765543222 2334444444432 22333333555777665
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHH
Q 036770 557 RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHT 636 (1061)
Q Consensus 557 ~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~ 636 (1061)
+-+...+ ..+.+++.+..+..+++..+|.+|++++..++..|..... ..+++..+.....+=.+.-|..
T Consensus 470 ~~~~~~~-~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~----------~~~ilp~ll~~~~D~v~nVR~~ 538 (588)
T d1b3ua_ 470 EKFGKEW-AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT----------TKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHCHHH-HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHH----------HHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHhCcHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHH----------HHHHHHHHHHHcCCCCHHHHHH
Confidence 5443322 3455677777777777888999999999999988775443 2334444443334434556888
Q ss_pred HHHHHhhhhccCCC
Q 036770 637 FYESVGHMIQAESD 650 (1061)
Q Consensus 637 l~eaig~li~~~~~ 650 (1061)
...+++.+....++
T Consensus 539 a~~~l~~i~~~~~~ 552 (588)
T d1b3ua_ 539 VAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHHcCc
Confidence 88999998877754
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=0.0098 Score=71.67 Aligned_cols=101 Identities=7% Similarity=0.034 Sum_probs=63.1
Q ss_pred CChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 036770 829 DYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHT-ERNIAETGLNLLLEMLKNFQASEFCNQFYRTYF 907 (1061)
Q Consensus 829 ~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~ 907 (1061)
..++++...+..+.+++......+. ..+..++..+..+++.. ++++...++..+..+....+. .+..|.
T Consensus 620 ~~~~~~~~~l~~l~~l~~~~~~~~~----~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~------~~~~~~ 689 (876)
T d1qgra_ 620 GSGGVQEDALMAVSTLVEVLGGEFL----KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS------NIIPFC 689 (876)
T ss_dssp -CCHHHHHHHHHHHHHHHHHGGGGG----GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG------GGHHHH
T ss_pred CCcchHHHHHHHHHHHHHHcchhhH----HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHH------hhhhhH
Confidence 4567888888888888876555442 25677888888888664 567888888888777654432 233455
Q ss_pred HHHHHHHHHHhccCCCccchHH-HHHHHHHHHH
Q 036770 908 VTIEQEIFAVLTDTFHKPGFKL-HVLVLQHLFC 939 (1061)
Q Consensus 908 ~~~~~~~~~~~td~~~~~~f~~-~~~~L~~l~~ 939 (1061)
..++..++..+.+.......+. ....+++++.
T Consensus 690 ~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~ 722 (876)
T d1qgra_ 690 DEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence 5666666777766543333433 3345555444
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=0.0071 Score=76.25 Aligned_cols=335 Identities=13% Similarity=0.112 Sum_probs=175.5
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 573 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L 573 (1061)
+|.....++.++|.++..+...... .+...++....+ +...++.+..+.+|+... ...+.+++.+++.
T Consensus 828 ~~~~~~~al~~Lge~~~~~~~~~~~----~l~~~l~~~l~~-----~~~~vr~aAa~aLg~l~~--~~~~~~lp~il~~- 895 (1207)
T d1u6gc_ 828 TDSIRLLALLSLGEVGHHIDLSGQL----ELKSVILEAFSS-----PSEEVKSAASYALGSISV--GNLPEYLPFVLQE- 895 (1207)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSCT----HHHHHHHHGGGC-----SCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHhccccchH----HHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHH--hhHHHHhHHHHHH-
Confidence 3444445566778777544322111 222333333332 222233445567775432 1223455444443
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHH
Q 036770 574 FEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQK 653 (1061)
Q Consensus 574 ~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~ 653 (1061)
+.. .+..+...+.++..+...+... ...|+...++..+......-+...+....|++|.+....|..
T Consensus 896 ---l~~-~~~~~~~ll~al~ei~~~~~~~-------~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~-- 962 (1207)
T d1u6gc_ 896 ---ITS-QPKRQYLLLHSLKEIISSASVV-------GLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-- 962 (1207)
T ss_dssp ---HHS-CGGGHHHHHHHHHHHHHSSCST-------TTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGG--
T ss_pred ---Hhc-CchHHHHHHHHHHHHHHhcchh-------hhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHH--
Confidence 333 3456777788887776644321 234677777776654444445566788889999987655432
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036770 654 REEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELIS 733 (1061)
Q Consensus 654 ~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~ 733 (1061)
++..|...+. + .++.....++..++ .+....+..+.+++..++|.++..
T Consensus 963 ---~lp~L~~~l~------------~----~~~~~r~~ai~~l~---~~~~~~~~~~~~~l~~li~~ll~~--------- 1011 (1207)
T d1u6gc_ 963 ---LLPRLKGYLI------------S----GSSYARSSVVTAVK---FTISDHPQPIDPLLKNCIGDFLKT--------- 1011 (1207)
T ss_dssp ---THHHHTTTSS------------S----SCHHHHHHHHHHTG---GGCCSSCCTHHHHHHHHSTTTHHH---------
T ss_pred ---HHHHHHHHhC------------C----CCHHHHHHHHHHHH---HHHHhcchhhHHHHHHHHHHHHHH---------
Confidence 3333322111 1 23333323333333 223334444444444333332211
Q ss_pred HhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHH
Q 036770 734 SSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFE 813 (1061)
Q Consensus 734 ~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~ 813 (1061)
. .+..+..| -..+.+++++++.-...+.+.++.++.
T Consensus 1012 ------------------------------------l-------~d~~~~vR-~~al~~l~~~~~~~p~li~~~l~~llp 1047 (1207)
T d1u6gc_ 1012 ------------------------------------L-------EDPDLNVR-RVALVTFNSAAHNKPSLIRDLLDTVLP 1047 (1207)
T ss_dssp ------------------------------------H-------SSSSTHHH-HHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred ------------------------------------h-------CCCCHHHH-HHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 0 00111111 135666677777666666777777777
Q ss_pred HHHHHhHHhhhhcc-------------CCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHH
Q 036770 814 AIFQCTLEMITKNF-------------EDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAE 880 (1061)
Q Consensus 814 ~l~~~tl~~i~~~~-------------~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 880 (1061)
.++..|. ++.++ ++=-|+|+.-|+.+.+++..|+..+ .+..+++.++.|++. |.+|--
T Consensus 1048 ~l~~~t~--~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~------~~~~~~~~~~~gl~d-~~di~~ 1118 (1207)
T d1u6gc_ 1048 HLYNETK--VRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL------DIFEFLNHVEDGLKD-HYDIKM 1118 (1207)
T ss_dssp HHHHTTS--CCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS------CHHHHHHHHHHTTSS-CHHHHH
T ss_pred HHHHHhc--cchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhc------CHHHHHHHHHhcccc-hHHHHH
Confidence 7775432 21110 2346899999999999998876432 356688999999987 569999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH-hccCCCccchHHHHHHHHHHHHH
Q 036770 881 TGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAV-LTDTFHKPGFKLHVLVLQHLFCL 940 (1061)
Q Consensus 881 ~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~td~~~~~~f~~~~~~L~~l~~~ 940 (1061)
.|...+.+++.... ....++...+ ...++.++.. +.+..-+..+..|-.+.+..++.
T Consensus 1119 ~~~~~l~~l~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~ 1176 (1207)
T d1u6gc_ 1119 LTFLMLVRLSTLCP--SAVLQRLDRL-VEPLRATCTTKVKANSVKQEFEKQDELKRSAMRA 1176 (1207)
T ss_dssp HHHHHHHHHHHSCC--HHHHTTTTTT-HHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--HHHHHHHHHH-HHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHH
Confidence 99999999887642 2222222222 1122333321 23333344455565666555553
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.026 Score=61.71 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=67.9
Q ss_pred ccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH--HHhHHHHHHH
Q 036770 492 DWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL--RAHWKFLKTV 569 (1061)
Q Consensus 492 ~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l--~~~~~~L~~v 569 (1061)
..+|....++..+++.++....+ ..++.+++.+.+...+ .+.+.+.+ .+.++|...+-. +...++++.+
T Consensus 338 ~~~~~~~~~a~~~l~~l~~~~~~----~~~~~l~~~i~~~l~s---~~~~~r~a--al~~l~~i~~~~~~~~~~~~l~~i 408 (458)
T d1ibrb_ 338 DDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKN---PDWRYRDA--AVMAFGCILEGPEPSQLKPLVIQA 408 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTTC---SSHHHHHH--HHHHHHHTSSSSCTTTTCTTTTTH
T ss_pred cccccHHHHHHHHHHHHHHhccH----hhhhHHHHHHHHHhcC---CCHHHHHH--HHHHHHHHHHhcCHhHHHHHHHHH
Confidence 44677777888888888876643 2455566655544432 22333333 333666544322 1123577888
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcc
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKF 603 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l 603 (1061)
++.++.+++++++.||..|++++.++++.+...-
T Consensus 409 ~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~ 442 (458)
T d1ibrb_ 409 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 442 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999998776543
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.46 E-value=0.47 Score=50.87 Aligned_cols=138 Identities=13% Similarity=0.132 Sum_probs=74.3
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~vl 570 (1061)
++.-...++.+++.++..-... ....+ ..+++.+..+..+ +...++...+++++..+..-..+...+ ..++
T Consensus 243 ~~~~~~~al~~l~~l~~~~~~~-~~~~~~~~~~~~l~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 316 (434)
T d1q1sc_ 243 ELPIVTPALRAIGNIVTGTDEQ-TQKVIDAGALAVFPSLLTN-----PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTGGGGHHHHTTC-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred hhhhhhchhhhhhhHHhhhhHH-HHHHHhccccchHHHhhcc-----cchhhhHHHHHHHhhhccccchhHHHHhhhhhH
Confidence 5666778899999887643211 11111 2234445555543 222233335556665443222222222 2356
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhhc----ccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKRK----FVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~----l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
+.++..+.++++.++..|+.++.+++..+... +... ..+..+++.+ ..-+.+-+....+++..++.
T Consensus 317 ~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~------~~i~~L~~ll----~~~d~~~~~~~l~~l~~ll~ 386 (434)
T d1q1sc_ 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC------GIIEPLMNLL----SAKDTKIIQVILDAISNIFQ 386 (434)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT------TCHHHHHHHT----TSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHC------CcHHHHHHHh----cCCCHHHHHHHHHHHHHHHH
Confidence 67777677778899999999999998765422 2221 1233333322 22244456666777777765
Q ss_pred c
Q 036770 647 A 647 (1061)
Q Consensus 647 ~ 647 (1061)
.
T Consensus 387 ~ 387 (434)
T d1q1sc_ 387 A 387 (434)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=2.2 Score=50.68 Aligned_cols=153 Identities=10% Similarity=0.129 Sum_probs=96.1
Q ss_pred hhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH------------hHH
Q 036770 497 NLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA------------HWK 564 (1061)
Q Consensus 497 ~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~------------~~~ 564 (1061)
-..+++|++|..++...+ +.++++++.+++.... +...++...++.++++..+... -.+
T Consensus 474 lr~~~~~~i~~~~~~~~~----~~~~~~~~~l~~~L~~-----~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p 544 (959)
T d1wa5c_ 474 LRVDAIKYIYTFRNQLTK----AQLIELMPILATFLQT-----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (959)
T ss_dssp HHHHHHHHHHHTGGGSCH----HHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred HHHHHHHHHHHHHhhccH----HHHHHHHHHHHHHhCC-----CchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHh
Confidence 445689999999887653 3566777777765543 2233333344466655443221 124
Q ss_pred HHHHHHHHHHHhhhcCChhH-----HHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh-----cCCcchH
Q 036770 565 FLKTVVNKLFEFMHETHPGV-----QDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA-----DLEPHQI 634 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v-----~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~-----~l~~~~~ 634 (1061)
+++.+++.++..+.+..... ...+..++.++++.+...+.+ |...++..+..+.. ...+...
T Consensus 545 ~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~--------~~~~i~~~l~~~~~~~~~~~~~~~~~ 616 (959)
T d1wa5c_ 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP--------LFPQLLAQFIEIVTIMAKNPSNPRFT 616 (959)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG--------GHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred hHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhcCccchHHH
Confidence 78888888888664332222 245788899999888876654 77777777765432 2234567
Q ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHH
Q 036770 635 HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQ 667 (1061)
Q Consensus 635 ~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~ 667 (1061)
..++|+++.++...+.+ ....+.+.++..+..
T Consensus 617 ~~~~e~l~~l~~~~~~~-~~~~l~~~l~p~i~~ 648 (959)
T d1wa5c_ 617 HYTFESIGAILNYTQRQ-NLPLLVDSMMPTFLT 648 (959)
T ss_dssp HHHHHHHHHHHHTSCGG-GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHH
Confidence 78999999999876543 334566666654443
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.97 E-value=0.92 Score=48.43 Aligned_cols=111 Identities=8% Similarity=0.073 Sum_probs=68.3
Q ss_pred hHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 036770 140 FIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLS 218 (1061)
Q Consensus 140 ~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~ 218 (1061)
-+.+++..+.++ +.....++..|+.+.. . .+.. +.. .+.+ ..++..+.+.|.+..++++...+..
T Consensus 14 ~i~~lv~~l~s~~~~~~~~a~~~l~~l~s---~-~~~~----~~~----~i~~--~g~i~~Lv~lL~~~~~~~v~~~a~~ 79 (434)
T d1q1sc_ 14 SVEDIVKGINSNNLESQLQATQAARKLLS---R-EKQP----PID----NIIR--AGLIPKFVSFLGKTDCSPIQFESAW 79 (434)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHH---S-SSCC----CHH----HHHH--TTCHHHHHHHTTCGGGHHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHhc---C-CCCc----hHH----HHHH--CCCHHHHHHHHccCCCHHHHHHHHH
Confidence 378888888765 3444445555554421 1 1111 011 1111 1355666667766666778888888
Q ss_pred HHHhcccccC--cchhcchhhHHHHHhhCCCc--cchHHHHHHHHHHhcC
Q 036770 219 TLHAFLSWIP--LGYIFESPLLETLLKFFPMP--SYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 219 ~l~~~l~wi~--~~~i~~~~ll~~l~~~L~~~--~~~~~a~~cL~ei~~~ 264 (1061)
++......-+ ...+++...++.+..+|.++ ++++.|+.+|..+...
T Consensus 80 ~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~ 129 (434)
T d1q1sc_ 80 ALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 129 (434)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhcc
Confidence 8887654322 22355678889888888754 6889999999988863
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.57 Score=51.61 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=42.6
Q ss_pred cCcHHHHHHHHHHHHhccc---ccCcchhcchhhHHHHHhhCCC---ccchHHHHHHHHHHhcC
Q 036770 207 SQRTDLIRATLSTLHAFLS---WIPLGYIFESPLLETLLKFFPM---PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 207 ~~~~~l~~~~L~~l~~~l~---wi~~~~i~~~~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~ 264 (1061)
+.+.+....++.++...++ .-++..+++...++.+.+++.. +.++..|+.+|..+.+.
T Consensus 87 s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~ 150 (503)
T d1wa5b_ 87 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 150 (503)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 3455666678888877664 3455667778889999988763 45788899999998864
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.45 E-value=5 Score=43.40 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcccccC--cchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcC
Q 036770 196 IHELCLYVLSASQRTDLIRATLSTLHAFLSWIP--LGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 196 I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~ 264 (1061)
++..+...+....++.+...++.++.....--+ ...+.+...++.++.+|. +++++..|+.||..++..
T Consensus 120 ~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~ 192 (503)
T d1wa5b_ 120 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD 192 (503)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhh
Confidence 344555566655667788888888876554211 122444577888887775 557899999999998874
|
| >d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Exportin HEAT-like repeat domain: Exportin-1 (Xpo1, Crm1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=2.7 Score=42.61 Aligned_cols=145 Identities=14% Similarity=0.187 Sum_probs=84.2
Q ss_pred HHHHHHHHhcccccCcchhcc----hhhHHHHH-hhCC-Cccch-HHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHH
Q 036770 214 RATLSTLHAFLSWIPLGYIFE----SPLLETLL-KFFP-MPSYR-NLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQ 286 (1061)
Q Consensus 214 ~~~L~~l~~~l~wi~~~~i~~----~~ll~~l~-~~L~-~~~~~-~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~ 286 (1061)
+..|+-+..|++..+-...+. +++++.++ .+-. .|..| ...+.|+..++.+ .++...+.+..+++.+++-..
T Consensus 47 keiLkLi~t~i~~~~d~~~v~~~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~k-l~~~~~~~v~~I~~~VFe~Tl 125 (321)
T d1w9ca_ 47 RETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNK-LGGHITAEIPQIFDAVFECTL 125 (321)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHH
Confidence 344555555555443222222 34555444 4433 47777 4578888888874 222233445555555555444
Q ss_pred hhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHH
Q 036770 287 TILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIR-VLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWN 365 (1061)
Q Consensus 287 ~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~-ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~ 365 (1061)
.++.. + -++-++.+..+-+++.++...+.. ++.-+++....+ ++.++-...|++.+|++.++..-.
T Consensus 126 ~MI~~--d--------f~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~v---idsi~wa~kH~~~~V~~~gL~~l~ 192 (321)
T d1w9ca_ 126 NMINK--D--------FEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLV---LDSIIWAFKHTMRNVADTGLQILF 192 (321)
T ss_dssp HHHSS--T--------TTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHH---HHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHhc--c--------chhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHHH---HHHHHHHcCCCchHHHHHHHHHHH
Confidence 44422 1 123467888888998888887644 444444322222 355555668899999999999888
Q ss_pred HHHHHHH
Q 036770 366 SFVLELF 372 (1061)
Q Consensus 366 ~l~~~l~ 372 (1061)
.+...+.
T Consensus 193 ~ll~n~~ 199 (321)
T d1w9ca_ 193 TLLQNVA 199 (321)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876653
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=88.62 E-value=11 Score=36.23 Aligned_cols=214 Identities=9% Similarity=0.059 Sum_probs=107.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH
Q 036770 21 TVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEV 100 (1061)
Q Consensus 21 av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~ 100 (1061)
++..+. .++|..|..|-..|..+. +++++..+..++. +.++.+|..|+..|...-. ...........++..
T Consensus 24 L~~~L~-d~~~~vR~~A~~~L~~~~-~~~~~~~l~~~l~-d~~~~vr~~a~~aL~~l~~------~~~~~~~~~~~l~~~ 94 (276)
T d1oyza_ 24 LFRLLD-DHNSLKRISSARVLQLRG-GQDAVRLAIEFCS-DKNYIRRDIGAFILGQIKI------CKKCEDNVFNILNNM 94 (276)
T ss_dssp HHHHTT-CSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCC------CTTTHHHHHHHHHHH
T ss_pred HHHHhc-CCCHHHHHHHHHHHHhhC-CHhHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc------ccccccchHHHHHHH
Confidence 344444 448889999999999876 5788888888884 5789999999999875311 111222233334444
Q ss_pred HHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHh-----ccCc
Q 036770 101 IVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVF-----DFSR 174 (1061)
Q Consensus 101 l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~-----~~~~ 174 (1061)
+.+ ++ ...++.....++..+.... +..=+..++.+....... ..........+..+...-. ....
T Consensus 95 ~l~---d~-----~~~vr~~a~~aL~~~~~~~-~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~~l~~ 165 (276)
T d1oyza_ 95 ALN---DK-----SACVRATAIESTAQRCKKN-PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK 165 (276)
T ss_dssp HHH---CS-----CHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT
T ss_pred Hhc---CC-----ChhHHHHHHHHHHHHcccc-chhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHHHhcc
Confidence 332 22 2345666666666665443 111133444444444322 2222222222322211100 0000
Q ss_pred ccchHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCccch
Q 036770 175 GEMTQQKIKELKQSLN---SEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYR 251 (1061)
Q Consensus 175 ~~l~~~r~~~l~~~l~---~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~~~~ 251 (1061)
..-...|. .....+. .........+...+. ..+..+...+...+.. +-....++.+++.+.++.+|
T Consensus 166 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~---------~~~~~~~~~L~~~l~d~~vr 234 (276)
T d1oyza_ 166 DPNGDVRN-WAAFAININKYDNSDIRDCFVEMLQ-DKNEEVRIEAIIGLSY---------RKDKRVLSVLCDELKKNTVY 234 (276)
T ss_dssp CSSHHHHH-HHHHHHHHHTCCCHHHHHHHHHHTT-CSCHHHHHHHHHHHHH---------TTCGGGHHHHHHHHTSSSCC
T ss_pred cccchhhh-hHHHHHHhhhccccccchhhhhhhh-hhhhhhhhhhccccch---------hhhhhhHHHHHHHhCChHHH
Confidence 00001111 1111111 111222222222222 2344455555555432 12345677888888899999
Q ss_pred HHHHHHHHHHhc
Q 036770 252 NLTLQCLTEVGA 263 (1061)
Q Consensus 252 ~~a~~cL~ei~~ 263 (1061)
..|+..|.++.+
T Consensus 235 ~~a~~aL~~ig~ 246 (276)
T d1oyza_ 235 DDIIEAAGELGD 246 (276)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCC
Confidence 999999988764
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=1.4 Score=43.76 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=75.4
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHH-H-HHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWK-F-LKTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~-~-L~~vl 570 (1061)
+..-...+++++|.++..-... ...++ ..+++.|+.+.... .++. ++...++.++...+-...+.. + -...+
T Consensus 72 ~~~vr~~A~~~L~~l~~~~~~~-~~~~~~~~~i~~Lv~lL~~~--~~~~--v~~~a~~aL~~l~~~~~~~~~~~~~~~gi 146 (264)
T d1xqra1 72 AAGLRWRAAQLIGTCSQNVAAI-QEQVLGLGALRKLLRLLDRD--ACDT--VRVKALFAISCLVREQEAGLLQFLRLDGF 146 (264)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHHHC--SCHH--HHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCchHHHHHHhhcC--CCHH--HHHHHHHHHHHHhccchhhHHHHHHhhhh
Confidence 4566677899999999764322 12221 34566666655431 1122 222234455443322222121 1 12346
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHH-HHHhHHHhhhcCCcchHHHHHHHHhhhhccC
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSE-LLSGLATTVADLEPHQIHTFYESVGHMIQAE 648 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~-il~~l~~~~~~l~~~~~~~l~eaig~li~~~ 648 (1061)
..|...++++++.++..|+.++..++......... +... .+..+-.....-+++.+.....+++.+....
T Consensus 147 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~--------~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 147 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT--------LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH--------HHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH--------HHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 66777777788999999999999999764432211 1110 1222222223334555677777777776543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=4.6 Score=39.57 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHhCC----------C-CHHHHHHHHHHHHHHhcCcc-cHH--------HHHHHHccCCChHHHHHHHHH
Q 036770 14 DVALLDATVAAFYGT----------G-SKEERTAADQILRDLQNNPD-MWL--------QVVHILQNSKNLNTKFFALQV 73 (1061)
Q Consensus 14 di~~l~~av~~ly~~----------~-~~~~r~~A~~~L~~fq~s~~-aw~--------~~~~iL~~s~~~~~rffaa~~ 73 (1061)
|++.+..++..+.++ . +.+.|..|-+.|..+-+..+ ++. .....+-++.++.+|..|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~ 82 (264)
T d1xqra1 3 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL 82 (264)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHH
Confidence 466777778887776 2 45567778888888876543 332 222222356789999999999
Q ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCcc----chhHHHHHHHcc
Q 036770 74 LEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARW----RSFIPDLVAAAK 149 (1061)
Q Consensus 74 L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~W----p~~i~~l~~~~~ 149 (1061)
|.+...+. +.-+...++...+..+.+...... ..-++.+.+.++..++...-+..+ ..-++.++..+.
T Consensus 83 L~~l~~~~----~~~~~~~~~~~~i~~Lv~lL~~~~----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~ 154 (264)
T d1xqra1 83 IGTCSQNV----AAIQEQVLGLGALRKLLRLLDRDA----CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 154 (264)
T ss_dssp HHHHHTTC----HHHHHHHHHTTHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHcCchHHHHHHhhcCC----CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh
Confidence 99988631 222333444455555554432111 234667788888888765422111 223555666555
Q ss_pred CC-hhHHHHHHHHHHHHHHH
Q 036770 150 TS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 150 ~~-~~~~~~~L~iL~~l~EE 168 (1061)
++ .......+..|..+..+
T Consensus 155 ~~~~~~~~~a~~~L~~l~~~ 174 (264)
T d1xqra1 155 QQVQKLKVKSAFLLQNLLVG 174 (264)
T ss_dssp SSCHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHhc
Confidence 43 34455566666666543
|