Citrus Sinensis ID: 036780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccEEEEcccEEEEcccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEccccEEEEEcccEEEEEHHHHHcccccHHHHHHHHHHEHEHEEEEEcccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MADHSAFFLISLLTLTAMHGIHavdytvsnraattpggmrfdkEIGAEYAKQTMTAATDFIWRLFQQnteadrknipqvdlfiddmkpgeiaftsnngihygddfiqnipvdlikqefsGVMYHEMTHVWQwngnnapnigWLIEGIADFVRLKanyvpegwakpgegtmwnqgHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Flexible Loop (DISEMBL)
MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Low Complexity Region (SEG)
MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Disordered region (IsUnstruct)
*****AFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYK*****
Disordered Region (DISOPRED)
****SAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVP**********MWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYG*
Disordered Region (DISEMBL)
MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Disordered Region (DISPRO)
*ADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
224103679	227	predicted protein [Populus trichocarpa]	0.952	0.969	0.641	1e-77
388505150	224	unknown [Medicago truncatula]	0.956	0.986	0.596	3e-75
255555255	225	conserved hypothetical protein [Ricinus	0.961	0.986	0.621	6e-75
388514459	225	unknown [Lotus japonicus]	0.943	0.968	0.626	1e-74
225429293	226	PREDICTED: uncharacterized protein LOC10	0.978	1.0	0.597	2e-74
396318181	229	PRp27-like protein [Olea europaea subsp.	0.922	0.930	0.633	2e-73
27803890	226	NtPRp27-like protein [Solanum tuberosum]	0.943	0.964	0.606	3e-73
147784683	226	hypothetical protein VITISV_038846 [Viti	0.978	1.0	0.575	3e-72
374431273	226	pathogenesis-related protein 17 [Vitis p	0.978	1.0	0.575	3e-72
5360263	242	NtPRp27 [Nicotiana tabacum]	0.961	0.917	0.586	6e-72

>gi|224103679|ref|XP_002313151.1| predicted protein [Populus trichocarpa] gi|222849559|gb|EEE87106.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/229 (64%), Positives = 181/229 (79%), Gaps = 9/229 (3%)

Query: 6   AFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLF 65
           + FL  LLTL+ ++GI+AV+YTV+NRA TTPGG+RF  E+G  Y  +TM  AT F WRLF
Sbjct: 5   SIFLAFLLTLSTLNGINAVEYTVTNRAPTTPGGIRFSNELGDNYTIKTMDQATIFFWRLF 64

Query: 66  QQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHE 125
           QQNTEADRK++P+V LF+DDM+  +IA+ SNN IH GDD+I+ I  D IK +F+GV+YHE
Sbjct: 65  QQNTEADRKDVPRVSLFVDDME--QIAYASNNEIHVGDDYIEGIKGD-IKWDFNGVLYHE 121

Query: 126 MTHVWQWNGN---NAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARF 182
           M H WQW+G+    AP +G LIEGIADF+RLKANY P  W KPG+G  W++G+  V ARF
Sbjct: 122 MAHTWQWDGSAGTKAP-VG-LIEGIADFMRLKANYAPSHWVKPGQGDSWDKGY-DVTARF 178

Query: 183 LDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 231
           LDYCNDLRNGFVAELNKKMR  Y+DNFF+ELLGK +DQLW DYKA +GN
Sbjct: 179 LDYCNDLRNGFVAELNKKMRVTYSDNFFVELLGKPVDQLWRDYKANFGN 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505150|gb|AFK40641.1| unknown [Medicago truncatula]

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 136/228 (59%), Positives = 177/228 (77%), Gaps = 7/228 (3%)

Query: 4   HSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWR 63
           H+ +F + LL +  +HGI AVDY+V+N A +TPGG+RF  ++GA+YA QT+ +AT FIWR
Sbjct: 2   HTLYFFLVLLAI--IHGIQAVDYSVTNNALSTPGGVRFRDQLGAQYATQTLDSATQFIWR 59

Query: 64  LFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMY 123
           +FQQN  ADRKN+ +V LF+DDM    +A+TSNN IH    ++ +   DL ++E +GV+Y
Sbjct: 60  VFQQNNPADRKNVQKVSLFVDDMDG--VAYTSNNEIHLSARYVNSYGGDL-RKEITGVLY 116

Query: 124 HEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFL 183
           HEMTHVWQWNGN   N G LIEGIAD+VRLKANY P  W KPG+G  W+QG+  V ARFL
Sbjct: 117 HEMTHVWQWNGNGQAN-GGLIEGIADYVRLKANYAPSHWVKPGQGNKWDQGY-DVTARFL 174

Query: 184 DYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 231
           DYC+ LR+GFVAELNK MR+GY+D FF++LLGK+++QLW +YKAKYGN
Sbjct: 175 DYCDTLRSGFVAELNKLMRNGYSDQFFVQLLGKTVNQLWTEYKAKYGN 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555255|ref|XP_002518664.1| conserved hypothetical protein [Ricinus communis] gi|223542045|gb|EEF43589.1| conserved hypothetical protein [Ricinus communis]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 143/230 (62%), Positives = 175/230 (76%), Gaps = 8/230 (3%)

Query: 1   MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDF 60
           M+ H+   L  L+TL  + G +AV+YTV+N A +T GG RF  EIG +Y+ QT++AATDF
Sbjct: 1   MSPHT-LILSLLVTLATIQGNYAVEYTVTNTAGSTAGGARFSAEIGEDYSLQTLSAATDF 59

Query: 61  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
           IWRLFQQ    DRKN+ +V LFIDDM    +A+ SNN IH    +I     DL K+E++G
Sbjct: 60  IWRLFQQPNAEDRKNVQKVSLFIDDMDG--VAYASNNEIHVSARYIGGYSGDL-KREYTG 116

Query: 121 VMYHEMTHVWQWNGN-NAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVA 179
           V+YHEMTH+WQWNGN  AP  G LIEGIADFVRLKANY P  W +PG+G  W+QG+  V 
Sbjct: 117 VIYHEMTHIWQWNGNGQAP--GGLIEGIADFVRLKANYAPSHWVQPGQGDRWDQGYD-VT 173

Query: 180 ARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKY 229
           ARFLDYCNDLRNGFVAELNKKM+DGY+D FF++LLGKS+DQLW+DYKAKY
Sbjct: 174 ARFLDYCNDLRNGFVAELNKKMKDGYSDQFFVDLLGKSVDQLWSDYKAKY 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514459|gb|AFK45291.1| unknown [Lotus japonicus]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/225 (62%), Positives = 172/225 (76%), Gaps = 7/225 (3%)

Query: 8   FLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQ 67
           F+  L+ LTAM G  AVDYTV+N+A +TPGG+RF  +IG   A+QT+ +AT FIWR+FQQ
Sbjct: 5   FIGLLIFLTAMQGTKAVDYTVTNKALSTPGGVRFRDQIGEASARQTLDSATQFIWRIFQQ 64

Query: 68  NTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMT 127
           NT ADRKN+ +V LFIDDM    +A+TSNN IH    ++ +   DL K+E SGV+YHEM 
Sbjct: 65  NTAADRKNVEKVSLFIDDMDG--VAYTSNNEIHLSARYVNSYGGDL-KREISGVLYHEMV 121

Query: 128 HVWQWNGN-NAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYC 186
           HV QWNGN  AP  G LIEGIAD+VRLKA+Y P  W KPG+G  W+ G+  V ARFLDYC
Sbjct: 122 HVRQWNGNGGAP--GGLIEGIADYVRLKADYAPSHWVKPGQGNKWDHGY-DVTARFLDYC 178

Query: 187 NDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 231
           N L+NGFVAELNKKMR GY+D FF+++LGKS+DQLW DYKAKYGN
Sbjct: 179 NSLKNGFVAELNKKMRTGYSDQFFVQILGKSVDQLWTDYKAKYGN 223

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429293|ref|XP_002269365.1| PREDICTED: uncharacterized protein LOC100259535 [Vitis vinifera]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/231 (59%), Positives = 175/231 (75%), Gaps = 5/231 (2%)

Query: 1   MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDF 60
           MA +  F L SL+ L A+HGIHAV+Y V+N A  + GG+RF+ +IG EY++QT+ +AT+F
Sbjct: 1   MAYNHMFLLSSLVVLAALHGIHAVEYVVTNNAENSTGGVRFNNDIGIEYSRQTLVSATEF 60

Query: 61  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
           IWRLFQQNT ADRK++ +V L I++     IA+  N+ IH   ++I+    DL K EF+G
Sbjct: 61  IWRLFQQNTPADRKDVQRVTLIIENTDG--IAYAENDEIHVNANYIKEYSGDL-KGEFTG 117

Query: 121 VMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAA 180
           V+YHEMTH+WQWNG N    G LIEGIADFVRLKANY+P  W +PG+G  W+QG+  V A
Sbjct: 118 VLYHEMTHIWQWNG-NGQTPGGLIEGIADFVRLKANYIPSHWVQPGQGDRWDQGY-DVTA 175

Query: 181 RFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 231
           RFLDYCN LRNGFVAELNKKMR GY+ +FF+ELL  ++DQLW DYKAKYGN
Sbjct: 176 RFLDYCNSLRNGFVAELNKKMRSGYSADFFVELLRNNVDQLWTDYKAKYGN 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|396318181|gb|AFN85535.1| PRp27-like protein [Olea europaea subsp. europaea]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/221 (63%), Positives = 170/221 (76%), Gaps = 8/221 (3%)

Query: 11  SLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTE 70
           SL  L A+ GIHAVDYT +N AA TPGG+RF  EIG +Y+ QT+ AAT+FIW++FQQ+T 
Sbjct: 13  SLAILAAIQGIHAVDYTFTNTAANTPGGVRFTNEIGEQYSIQTLDAATNFIWKIFQQDTT 72

Query: 71  -ADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHV 129
            ADRKN+ +V LFIDDM    +A+ SNN IH    +IQ    D +K E +GV+YHEMTH+
Sbjct: 73  PADRKNVQKVSLFIDDMDG--VAYASNNEIHVSARYIQGYSGD-VKTEITGVLYHEMTHI 129

Query: 130 WQWNGN-NAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCND 188
           WQWNGN  AP  G LIEGIAD+VRLKA Y P  W KPGEG  W+QG+  V ARFLDYC+ 
Sbjct: 130 WQWNGNGQAP--GGLIEGIADYVRLKAGYAPSHWVKPGEGDRWDQGYD-VTARFLDYCDS 186

Query: 189 LRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKY 229
           LR+GFVAELNKKMRDGYN+ +F++LLGK++DQLW DYKAKY
Sbjct: 187 LRSGFVAELNKKMRDGYNNTYFVDLLGKTVDQLWMDYKAKY 227

Source: Olea europaea subsp. europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27803890|gb|AAO22065.1| NtPRp27-like protein [Solanum tuberosum]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 173/226 (76%), Gaps = 8/226 (3%)

Query: 7   FFLISLLTLTAM-HGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLF 65
           FF+ SL  L      I AVDY+V+N AA TPGG RFD++IGA+Y++QT+ AAT FIW +F
Sbjct: 6   FFISSLFVLAIFTQKIDAVDYSVTNTAANTPGGARFDRDIGAQYSQQTLVAATSFIWNIF 65

Query: 66  QQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHE 125
           QQN+ ADRKN+P+V +F+DDM    +A+ SNN IH    +IQ    D +++E +GV+YHE
Sbjct: 66  QQNSPADRKNVPKVSMFVDDMDG--VAYASNNEIHVSARYIQGYSGD-VRREITGVLYHE 122

Query: 126 MTHVWQWNGN-NAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLD 184
            THVWQWNGN  AP  G LIEGIAD+VRLKA   P  W KPG+G  W+QG+  V A+FLD
Sbjct: 123 ATHVWQWNGNGGAP--GGLIEGIADYVRLKAGLGPSHWVKPGQGNRWDQGY-DVTAQFLD 179

Query: 185 YCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYG 230
           YCN LRNGFVAELNKKMR+GY+D FF++LLGK++DQLW+DYKAK+G
Sbjct: 180 YCNSLRNGFVAELNKKMRNGYSDQFFVDLLGKTVDQLWSDYKAKFG 225

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784683|emb|CAN65930.1| hypothetical protein VITISV_038846 [Vitis vinifera]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 168/231 (72%), Gaps = 5/231 (2%)

Query: 1   MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDF 60
           MA      L   + L A HGI AV+Y V+N A ++ GG+RF  EIG  Y++QT+ +ATDF
Sbjct: 1   MASRHIVLLSCFVFLAAQHGIQAVEYEVTNNAGSSAGGVRFTNEIGIPYSRQTLVSATDF 60

Query: 61  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
           IW +FQQNT  +RK + +V L I++M    +A+ SNN IH   ++I +   D +K EF+G
Sbjct: 61  IWGVFQQNTPEERKTVQKVSLIIENMDG--VAYASNNEIHVNANYIGSYSGD-VKTEFTG 117

Query: 121 VMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAA 180
           V+YHEMTH+WQWNGN     G LIEGIAD+VRLKANY P  W +PG+G  W+QG+  V A
Sbjct: 118 VLYHEMTHIWQWNGN-GQTPGGLIEGIADYVRLKANYAPSHWVQPGQGNRWDQGYD-VTA 175

Query: 181 RFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 231
           RFLDYCN LRNGFVAELNKKMR GY+ +FF+ELLGK++DQLW DYKAKYGN
Sbjct: 176 RFLDYCNSLRNGFVAELNKKMRSGYSADFFVELLGKTVDQLWTDYKAKYGN 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374431273|gb|AEZ51831.1| pathogenesis-related protein 17 [Vitis pseudoreticulata]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 167/231 (72%), Gaps = 5/231 (2%)

Query: 1   MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDF 60
           MA      L   + L A HGI AV+Y V+N A ++ GG+RF  EIG  Y++QT+ +ATDF
Sbjct: 1   MASRHIVLLSCFVFLAAQHGIQAVEYEVTNNAGSSAGGVRFTNEIGIPYSRQTLVSATDF 60

Query: 61  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
           IW +FQQNT  +RK + +V L I++     +A+ SNN IH   ++I +   D +K EF+G
Sbjct: 61  IWGVFQQNTPEERKTVQKVSLIIENTNG--VAYASNNEIHVNANYIGSYSGD-VKSEFTG 117

Query: 121 VMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAA 180
           V+YHEMTH+WQWNGN     G LIEGIAD+VRLKANY P  W KPG+G  W+QG+  V A
Sbjct: 118 VLYHEMTHIWQWNGN-GQTPGGLIEGIADYVRLKANYAPSHWVKPGQGNRWDQGYD-VTA 175

Query: 181 RFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYGN 231
           RFLDYCN LRNGFVAELNKKMR GY+ +FF+ELLGK++DQLW DYKAKYGN
Sbjct: 176 RFLDYCNSLRNGFVAELNKKMRSGYSADFFVELLGKTVDQLWTDYKAKYGN 226

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5360263|dbj|BAA81904.1| NtPRp27 [Nicotiana tabacum]

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 135/230 (58%), Positives = 170/230 (73%), Gaps = 8/230 (3%)

Query: 2   ADHSAFFLISLLTLTAM-HGIHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDF 60
           A H  FF  SL  L      IHAVDY+V+N AA T GG RF+++IGA+Y++QT+ AAT F
Sbjct: 17  AHHKIFFFYSLFVLAIFTQKIHAVDYSVTNTAANTAGGARFNRDIGAQYSQQTLAAATSF 76

Query: 61  IWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSG 120
           IW  FQQN  ADRKN+ +V +F+DDM    +A+ SNN IH    +IQ    D +++E +G
Sbjct: 77  IWNTFQQNFPADRKNVQKVSMFVDDMDG--VAYASNNEIHVSASYIQGYSGD-VRREITG 133

Query: 121 VMYHEMTHVWQWNGN-NAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVA 179
           V+YHE THVWQWNGN  AP  G LIEGIAD+VRLKA + P  W KPG+G  W+QG+  V 
Sbjct: 134 VLYHESTHVWQWNGNGGAP--GGLIEGIADYVRLKAGFAPSHWVKPGQGDRWDQGY-DVT 190

Query: 180 ARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKY 229
           ARFLDYCN LRNGFVA+LNKKMR GY++ FF++LLGK++DQLW+DYKAK+
Sbjct: 191 ARFLDYCNSLRNGFVAQLNKKMRTGYSNQFFIDLLGKTVDQLWSDYKAKF 240

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2041839	225	AT2G15220 [Arabidopsis thalian	0.956	0.982	0.527	1.6e-63
TAIR|locus:2041824	225	AT2G15130 "AT2G15130" [Arabido	0.961	0.986	0.512	1.3e-59
UNIPROTKB|G4NF67	313	MGG_04184 "Uncharacterized pro	0.731	0.539	0.325	4.1e-17
TAIR|locus:2041819	102	AT2G15170 "AT2G15170" [Arabido	0.419	0.950	0.413	1.3e-15
TAIR|locus:2045600	276	AT2G42900 "AT2G42900" [Arabido	0.857	0.717	0.232	9.7e-05

TAIR|locus:2041839 AT2G15220 [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 123/233 (52%), Positives = 167/233 (71%)

Query:     1 MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGA-EYAKQTMTAATD 59
             M  H  FF+ISL+ + ++  ++AVDY+V + +  + GG RF  EIG   Y  QT+ +ATD
Sbjct:     1 MTFHKIFFVISLMLVVSL--VNAVDYSVVDNSGDSTGGRRFRGEIGGISYGTQTLRSATD 58

Query:    60 FIWRLFQQNTEADRKNIPQVDLFIDDMKPGE-IAFTSNNGIHYGDDFIQNIPVDLIKQEF 118
             F+WRLFQQ   +DRK++ ++ LF+++   G+ +A+ S N IH+   ++  +  D +K+EF
Sbjct:    59 FVWRLFQQTNPSDRKSVTKITLFMEN---GDGVAYNSANEIHFNVGYLAGVSGD-VKREF 114

Query:   119 SGVMYHEMTHVWQWNG-NNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSS 177
             +GV+YHE+ H WQWNG   AP  G LIEGIAD+VRLKA Y P  W  PG G  W+QG+  
Sbjct:   115 TGVVYHEVVHSWQWNGAGRAP--GGLIEGIADYVRLKAGYAPSHWVGPGRGDRWDQGYD- 171

Query:   178 VAARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYG 230
             V ARFLDYCN LRNGFVAELNKKMR+GY+D FF++LLGK ++QLW +YKAKYG
Sbjct:   172 VTARFLDYCNGLRNGFVAELNKKMRNGYSDGFFVDLLGKDVNQLWREYKAKYG 224

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2041824 AT2G15130 "AT2G15130" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 119/232 (51%), Positives = 160/232 (68%)

Query:     1 MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGA-EYAKQTMTAATD 59
             MA H  F +ISL+   ++  + AVD++V +    +PGG RF  EIG   Y +Q++  ATD
Sbjct:     1 MACHKIFLVISLMLAVSL--VSAVDFSVVDNTGDSPGGRRFRNEIGGVSYGEQSLRDATD 58

Query:    60 FIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFS 119
             F WRLFQQ   +DRK++ ++ LF+++   G IA++S + IHY    + +     +++ F+
Sbjct:    59 FTWRLFQQTNPSDRKDVTKITLFMENSN-G-IAYSSQDEIHYNAGSLVD-DKGYVRRGFT 115

Query:   120 GVMYHEMTHVWQWNG-NNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSV 178
             GV+YHE+ H WQWNG   AP  G LIEGIAD+VRLKA YV   W +PG G  W+QG+  V
Sbjct:   116 GVVYHEVVHSWQWNGAGRAP--GGLIEGIADYVRLKAGYVASHWVRPGGGDRWDQGYD-V 172

Query:   179 AARFLDYCNDLRNGFVAELNKKMRDGYNDNFFMELLGKSIDQLWNDYKAKYG 230
              ARFL+YCNDLRNGFVAELNKKMR  YND FF++LLGK ++QLW +YKA YG
Sbjct:   173 TARFLEYCNDLRNGFVAELNKKMRSDYNDGFFVDLLGKDVNQLWREYKANYG 224

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

UNIPROTKB|G4NF67 MGG_04184 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 65/200 (32%), Positives = 101/200 (50%)

Query:    50 AKQTMTAATDFIWRLFQQNTEADRKNIP---QVDLFIDDMKPGEIAFTSNNG-------I 99
             A  T+  A   + R+     +    ++P    V L + DM  G +A+T+ +        I
Sbjct:   101 ASATLPTAVANVQRILYNTPKDHTTHLPPTRSVTLILRDMD-G-VAYTTGSELDSDHKEI 158

Query:   100 HYGDDFIQNIPV---------DLIKQEFSGVMYHEMTHVWQWNGNNA-PNIGWLIEGIAD 149
             H+   +I++I           D I  E  GV+ HE+ H +QW+     P  G LIEGIAD
Sbjct:   159 HFSLHYIESISKREKCSGDENDGIAHEIVGVITHELVHCYQWDAKGTCP--GGLIEGIAD 216

Query:   150 FVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDY--CNDLRNGFVAELNKKMRDG-YN 206
             FVRL+    P  W K  EG+ W++G+   A  FLDY  C    +G V ++N+ +R   Y 
Sbjct:   217 FVRLRCGLSPPHWEKDLEGS-WDRGYQHTAY-FLDYLECR-FGDGTVRKINEGLRTRKYE 273

Query:   207 DN-FFMELLGKSIDQLWNDY 225
             +  F+ E++G+ ++QLW DY
Sbjct:   274 EKPFWTEIVGRPVEQLWADY 293

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041819 AT2G15170 "AT2G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/104 (41%), Positives = 62/104 (59%)

Query:     1 MADHSAFFLISLLTLTAMHGIHAVDYTVSNRAATTPGGMRFDKEIGA-EYAKQTMTAATD 59
             MA H  F +I L+   +M  ++AVD+ V +    +PGG +F  EIG   Y KQ++ +ATD
Sbjct:     1 MACHEIFLVICLMLAVSM--VNAVDFFVVDNTGDSPGGRKFRDEIGGVSYGKQSVRSATD 58

Query:    60 FIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNG--IHY 101
             F WRLFQQ    DRK I  + LFI++     +A+ +N G  IH+
Sbjct:    59 FTWRLFQQTNPLDRKTITNITLFIENSN--SVAYNTNLGKEIHF 100

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2045600 AT2G42900 "AT2G42900" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 9.7e-05, P = 9.7e-05
 Identities = 49/211 (23%), Positives = 91/211 (43%)

Query:     6 AFFLISLLTLTAMH-GIHAVDYTVSNRAATTPGGMRFDKEIGAE-YAKQTMTAATDFIWR 63
             +  L+  ++L A H        ++ N A  +P G RF     ++  A + +  A+ F+ R
Sbjct:    36 SILLVGAISLWANHEASKGFSISIINDAKDSPSGKRFALFFESDDTAVRILLDASFFVER 95

Query:    64 -LFQQNTEADRKNIPQVDL-FIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGV 121
              L++      RK +  V + F  +       F+  +G  +G+  I+  P    +++FS  
Sbjct:    96 FLYEGVPHRLRKPVNHVTVQFCGNSSDRVDRFSVTSGASHGEYVIRLSPSLTERKKFSNA 155

Query:   122 ----MYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSS 177
                 +   M  +W W G+ +     L+ G+ +++ +++      + K G G  W     S
Sbjct:   156 VESALRRSMVRIWLW-GDESGASPELVAGMVEYLAVESRK-RRHFEKFG-GN-WKDKEKS 211

Query:   178 V-AARFLDYCNDLRNGFVAELNKKMRDGYND 207
             V     LDYC     GF+  LN  MR  ++D
Sbjct:   212 VYVVSLLDYCERRSEGFIRRLNHGMRLRWDD 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       231   0.00084  113 3  11 22  0.40    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  214 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.59u 0.08s 18.67t   Elapsed:  00:00:01
  Total cpu time:  18.59u 0.08s 18.67t   Elapsed:  00:00:01
  Start:  Fri May 10 06:27:51 2013   End:  Fri May 10 06:27:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007701001 SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (226 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
pfam04450	203	pfam04450, BSP, Peptidase of plants and bacteria	4e-73

>gnl|CDD|218090 pfam04450, BSP, Peptidase of plants and bacteria

 Score =  220 bits (563), Expect = 4e-73
 Identities = 95/212 (44%), Positives = 126/212 (59%), Gaps = 16/212 (7%)

Query: 21  IHAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVD 80
             AV   + N    TPGG RFD+ +    A+QT++ A+ F+WR+  Q    DR  +  V 
Sbjct: 1   APAVTLEIIN--PDTPGGKRFDRLVP--DAEQTLSDASRFVWRILYQPPS-DRPPVRSVT 55

Query: 81  LFIDDMKPGEIAFTS----NNGIHYGDDFIQNIP--VDLIKQEFSGVMYHEMTHVWQWNG 134
           L +DD+    +A+TS    +  IH    +I+      D +K E +GV+YHE+ HVWQW+G
Sbjct: 56  LTLDDI--DGVAYTSGDDDHKEIHLSARYIEGSSAENDDVKDEVTGVLYHELVHVWQWDG 113

Query: 135 NNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCNDLRNGFV 194
                 G LIEGIAD+VRLKA Y P  W +PG G  W+ G+  V ARFLDY  D   GFV
Sbjct: 114 TGRAP-GGLIEGIADYVRLKAGYAPPHWKRPGGGDRWDDGY-DVTARFLDYLEDRSPGFV 171

Query: 195 AELNKKM-RDGYNDNFFMELLGKSIDQLWNDY 225
            +LN KM RDGY D FF ++LGK +DQLW +Y
Sbjct: 172 RKLNDKMLRDGYFDGFFKQILGKDVDQLWREY 203

These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens. Length = 203

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	100.0
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	98.41
PF13699	79	DUF4157: Domain of unknown function (DUF4157)	97.21
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	96.64
PF01433	390	Peptidase_M1: Peptidase family M1 This is family M	96.58
TIGR02412	831	pepN_strep_liv aminopeptidase N, Streptomyces livi	96.33
PRK04860	160	hypothetical protein; Provisional	96.17
COG3091	156	SprT Zn-dependent metalloprotease, SprT family [Ge	96.13
PF13203	292	DUF2201_N: Putative metallopeptidase domain	95.82
PRK04351	149	hypothetical protein; Provisional	95.67
PRK03072	288	heat shock protein HtpX; Provisional	95.19
smart00731	146	SprT SprT homologues. Predicted to have roles in t	94.98
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	94.98
PRK01345	317	heat shock protein HtpX; Provisional	94.88
PRK05457	284	heat shock protein HtpX; Provisional	94.8
PRK03001	283	M48 family peptidase; Provisional	94.78
COG4783	484	Putative Zn-dependent protease, contains TPR repea	94.69
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	94.6
PRK04897	298	heat shock protein HtpX; Provisional	94.18
KOG1046	882	consensus Puromycin-sensitive aminopeptidase and r	94.16
PRK03982	288	heat shock protein HtpX; Provisional	94.01
COG0501	302	HtpX Zn-dependent protease with chaperone function	93.81
PRK02391	296	heat shock protein HtpX; Provisional	93.79
PF10460	366	Peptidase_M30: Peptidase M30; InterPro: IPR019501	93.54
TIGR02414	863	pepN_proteo aminopeptidase N, Escherichia coli typ	93.04
PRK02870	336	heat shock protein HtpX; Provisional	93.01
PF07607	128	DUF1570: Protein of unknown function (DUF1570); In	92.99
PRK01265	324	heat shock protein HtpX; Provisional	91.5
PRK14015	875	pepN aminopeptidase N; Provisional	90.74
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	89.34
PF08325	186	WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1	88.43
PF12315	212	DUF3633: Protein of unknown function (DUF3633); In	88.27
PHA02456	141	zinc metallopeptidase motif-containing protein	85.36
TIGR02411	601	leuko_A4_hydro leukotriene A-4 hydrolase/aminopept	82.65
COG0308	859	PepN Aminopeptidase N [Amino acid transport and me	82.19

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=100.00  E-value=2.4e-72  Score=487.46  Aligned_cols=195  Identities=47%  Similarity=0.915  Sum_probs=184.9

Q ss_pred             ceEEEEEecCCCCCccchhHhhhhchHHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEeeC----C
Q 036780           22 HAVDYTVSNRAATTPGGMRFDKEIGAEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSN----N   97 (231)
Q Consensus        22 ~~~~~~v~n~a~~t~gg~rF~~~i~~~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~g----~   97 (231)
                      ++|+|++.|  ++||||+||++.|+  +++++|.+|+.+|+++|+++ |.++|+|++|||+|++|  +|||||+|    .
T Consensus         2 p~~~l~v~n--~~s~Gg~~F~~~~~--~a~~~L~~a~~~V~~~ly~~-~~~~~~v~~Vt~~~~~~--~gVA~t~gd~~~~   74 (205)
T PF04450_consen    2 PKFRLEVNN--LDSPGGRRFDRFIP--DAEQVLRDASRFVWRLLYQS-PADRKPVRSVTLILDDM--DGVAYTSGDDDHK   74 (205)
T ss_pred             CeEEEEeeC--CCCHHHHHHHHHhc--CHHHHHHHHHHHHHHHhCCC-CCCCCcccEEEEEEECC--CeeEEEecCCCcc
Confidence            478899988  99999999999994  58899999999999999877 99999999999999999  99999999    7


Q ss_pred             eEEEcchhhhcCCc-hhhhhHHHHHHHHhhhhhhccCCCCCCCCcchhhhHHHHHHHhhCcCCCCCCCCCCCCCcccCcc
Q 036780           98 GIHYGDDFIQNIPV-DLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRLKANYVPEGWAKPGEGTMWNQGHS  176 (231)
Q Consensus        98 ~I~~s~~~i~~~~~-d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGIADyVRl~ag~~~~~w~~p~~g~~wd~gY~  176 (231)
                      +||||++||++++. ++++.||+|||+|||||||||+++|. +|+|||||||||||++|||+|+||++|+++++||+|| 
T Consensus        75 ~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~~~~-~P~~liEGIADyVRl~aG~~~~~w~~p~~~~~wd~gY-  152 (205)
T PF04450_consen   75 EIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDGRGT-APGGLIEGIADYVRLKAGYAPPHWKRPGGGDSWDDGY-  152 (205)
T ss_pred             EEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCCCCC-CChhheecHHHHHHHHcCCCCccccCCCCCCCccccc-
Confidence            99999999999984 34899999999999999999999998 9999999999999999999999999999888999999 


Q ss_pred             hhHhHHHHHHhc--cCCcHHHHHHHHHhc-cC-CHHHHHHHhCCCHHHHHHHH
Q 036780          177 SVAARFLDYCND--LRNGFVAELNKKMRD-GY-NDNFFMELLGKSIDQLWNDY  225 (231)
Q Consensus       177 ~~TA~FL~wle~--~~~gfV~~LN~~mr~-~y-s~~~~~~~~G~~v~~LW~eY  225 (231)
                      ++|||||+|||+  +++|||++||++||+ +| ++++|+++||++|++||+||
T Consensus       153 ~~TA~FL~wle~~~~~~gfV~~LN~~m~~~~y~~~~~~~~l~G~~v~~LW~eY  205 (205)
T PF04450_consen  153 RTTARFLDWLEDNRYGKGFVRRLNEAMRRDKYSSDDFWKELLGKPVDELWAEY  205 (205)
T ss_pred             HHHHHHHHHHHhcccCccHHHHHHHHHhhCCCCcHhHHHHHHCcCHHHHHhhC
Confidence            999999999997  789999999999955 59 99999999999999999998

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=98.41  E-value=5.1e-07  Score=69.02  Aligned_cols=58  Identities=26%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             CceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCC--CCCCcchhhhHHHHHHH
Q 036780           89 GEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNN--APNIGWLIEGIADFVRL  153 (231)
Q Consensus        89 ~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g--~~aP~~liEGIADyVRl  153 (231)
                      .||++...+.|.+..   ...    -.+.+..+|.||++|.|+.+-.+  ...|.|+.||+|+|+--
T Consensus         3 ~G~~~~~~~~i~~~~---~~~----~~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~   62 (128)
T PF13485_consen    3 GGVYYPGFNRIVVYF---QGS----DEDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEG   62 (128)
T ss_pred             eEEEecCCCEEEEec---CCC----CHHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhc
Confidence            578887677776432   122    12334589999999999986665  34999999999999974

>PF13699 DUF4157: Domain of unknown function (DUF4157)

Probab=97.21  E-value=0.00039  Score=52.23  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=36.8

Q ss_pred             CCCeEEEEEecc------CCCceEEeeCCeEEEcchhhh-cCCchhhhhHHHHHHHHhhhhhhccC
Q 036780           75 NIPQVDLFIDDM------KPGEIAFTSNNGIHYGDDFIQ-NIPVDLIKQEFSGVMYHEMTHVWQWN  133 (231)
Q Consensus        75 ~v~~Vtl~l~d~------~~~GVA~t~g~~I~~s~~~i~-~~~~d~~~~ei~Gvl~HE~~Hv~Q~~  133 (231)
                      +...|++.....      .+.-.|+|.|+.|+|.+.-.. +.+.+      ..+|.||++|++|..
T Consensus        17 dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~------~~llaHEl~Hv~Qq~   76 (79)
T PF13699_consen   17 DLSDVRVHTGPAASRAAAALGARAFTVGNDIYFAPGKYNPDSPEG------RALLAHELAHVVQQR   76 (79)
T ss_pred             CccceEEEeCCchhhhhhccCCeEEEECCEEEEcCCCcCCCCCCc------chhHhHHHHHHHhhc
Confidence            356677766511      124479999999999776433 33334      579999999999964

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=96.64  E-value=0.0041  Score=50.73  Aligned_cols=52  Identities=15%  Similarity=0.257  Sum_probs=38.0

Q ss_pred             EEEEEe-cc-CCCceEEeeCC---eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           79 VDLFID-DM-KPGEIAFTSNN---GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        79 Vtl~l~-d~-~~~GVA~t~g~---~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      +++++. .+ .--|.....+.   +|.+|+.++...+    ..++..+|.|||+|.|+|.-
T Consensus        20 ~~i~~~~~~~~~~G~~~~~~~~~~~I~ls~~~~~~~~----~~~~~~tL~HEm~H~~~~~~   76 (157)
T PF10263_consen   20 IPITWSKRMKRTAGRCRYKRRSPCEIRLSPKLLDRNP----EEELIDTLLHEMAHAAAYVF   76 (157)
T ss_pred             eEEEEECCCCCceEEEEECCCCceEEEECHHHHHhhH----HHHHHHHHHHHHHHHHhhhc
Confidence            666666 44 11355544555   8999999998853    45899999999999999744

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification

Probab=96.58  E-value=0.017  Score=52.94  Aligned_cols=98  Identities=22%  Similarity=0.310  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEe-ccCCCceEEeeCCeEEEcchhhhcCC---chhhhhHHHHHHHH
Q 036780           49 YAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFID-DMKPGEIAFTSNNGIHYGDDFIQNIP---VDLIKQEFSGVMYH  124 (231)
Q Consensus        49 ~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~-d~~~~GVA~t~g~~I~~s~~~i~~~~---~d~~~~ei~Gvl~H  124 (231)
                      ++.+....+..+.+..|..+-     |..+..++.- ++  ..-+.-.=+-|.++.+++-..+   ....+.++..++.|
T Consensus       229 ~~~~~~~~~l~~~~~~~g~~y-----p~~k~~~v~~p~~--~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iah  301 (390)
T PF01433_consen  229 FALDIAPKALEYYEEYFGIPY-----PFKKLDIVAVPDF--PFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAH  301 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHTS-------SSSEEEEEEEST---SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHhhccccc-----eecceeEEEEecc--ccccccccccccccccccccCcccccchhhhhhHHHHHH
Confidence            455666667777777774332     3446666544 43  2123323345777777663322   22346788899999


Q ss_pred             hhhhhhccCCCCC----CCCcchhhhHHHHHHHhh
Q 036780          125 EMTHVWQWNGNNA----PNIGWLIEGIADFVRLKA  155 (231)
Q Consensus       125 E~~Hv~Q~~~~g~----~aP~~liEGIADyVRl~a  155 (231)
                      ||+|-|-  |.-.    ..--||-||+|.|.....
T Consensus       302 ElahqWf--Gn~vt~~~w~d~WL~Eg~a~y~~~~~  334 (390)
T PF01433_consen  302 ELAHQWF--GNLVTPKWWSDLWLNEGFATYLEYLI  334 (390)
T ss_dssp             HHHTTTB--TTTEEESSGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--ccCCccccchhhhHHHHHHHHHHHHh
Confidence            9999763  4332    123589999999997753

; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....

>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type

Probab=96.33  E-value=0.11  Score=53.84  Aligned_cols=169  Identities=18%  Similarity=0.318  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhhcCC-chhhhhHHHHHHHHhh
Q 036780           49 YAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQNIP-VDLIKQEFSGVMYHEM  126 (231)
Q Consensus        49 ~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~~~~-~d~~~~ei~Gvl~HE~  126 (231)
                      ++.++...+..+.+..|..+=|.     .+..++ +.++  .+-|.-.=+-|.++..++-... .+..+..+..|+.|||
T Consensus       223 ~al~~~~~~l~~~e~~fg~pYP~-----~k~d~V~vP~f--~~GaMEn~Glit~~e~~l~~~~~~~~~~~~~~~viaHEl  295 (831)
T TIGR02412       223 AIFTITRQGLAFFHRKFGYPYPF-----KKYDQIFVPEF--NAGAMENAGCVTFAENFLHRAEATRAEKENRAGVILHEM  295 (831)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCc-----ccCCEEEcCCC--CCCcccccceeeechhhccCCcCCHHHHHHHHHHHHHHH
Confidence            45566677778888887543333     233332 2333  2113322346777766663321 1223455778999999


Q ss_pred             hhhhccCCCCC----CCCcchhhhHHHHHHHhhC--cCC--CCCC-------------------CCCC---------CCC
Q 036780          127 THVWQWNGNNA----PNIGWLIEGIADFVRLKAN--YVP--EGWA-------------------KPGE---------GTM  170 (231)
Q Consensus       127 ~Hv~Q~~~~g~----~aP~~liEGIADyVRl~ag--~~~--~~w~-------------------~p~~---------g~~  170 (231)
                      +|-|  -|+-.    ..--||-||.|.|.-..+=  ..|  ..|.                   .|-.         ...
T Consensus       296 AHqW--FGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~  373 (831)
T TIGR02412       296 AHMW--FGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSN  373 (831)
T ss_pred             HHHH--hCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHh
Confidence            9977  34332    0234899999999865421  011  1110                   1110         011


Q ss_pred             cc-cCcchhHhHHHHHHhc-cCC-cHHHHHHHHHhcc-CC----HHHH---HHHhCCCHHHHHHHHHH
Q 036780          171 WN-QGHSSVAARFLDYCND-LRN-GFVAELNKKMRDG-YN----DNFF---MELLGKSIDQLWNDYKA  227 (231)
Q Consensus       171 wd-~gY~~~TA~FL~wle~-~~~-gfV~~LN~~mr~~-ys----~~~~---~~~~G~~v~~LW~eY~~  227 (231)
                      .+ -.| .-.|-+|.-|+. .+. .|-+-|..=++.. |.    +++|   .+..|+++.++++.+-.
T Consensus       374 fd~isY-~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~  440 (831)
T TIGR02412       374 FDGITY-AKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLE  440 (831)
T ss_pred             ccCccc-hhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            22 467 788888888884 343 3444444444332 43    3444   55789999998887654

This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).

>PRK04860 hypothetical protein; Provisional

Probab=96.17  E-value=0.0073  Score=51.14  Aligned_cols=50  Identities=16%  Similarity=0.206  Sum_probs=40.0

Q ss_pred             eEEEEEeccCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780           78 QVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW  132 (231)
Q Consensus        78 ~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~  132 (231)
                      .|++..+--. .|.|.-..++|.|||..+...+.    .++.+||.|||+|.+.|
T Consensus        28 ~~~f~~R~rt-aG~~~l~~~~I~~Np~ll~~~~~----~~l~~~v~HEl~H~~~~   77 (160)
T PRK04860         28 KVSYTQRGTS-AGTAWLQSNEIRLNPVLLLENQQ----AFIDEVVPHELAHLLVY   77 (160)
T ss_pred             EEEEeecchh-hcchhHhcCCeeeCHHHHhhCcH----HHHHhHHHHHHHHHHHH
Confidence            6777776542 56777667899999999988753    46889999999999988

>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]

Probab=96.13  E-value=0.005  Score=51.94  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhh
Q 036780           50 AKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHV  129 (231)
Q Consensus        50 a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv  129 (231)
                      -.+.+.+|+..    |+.     +.+-.++.+..+-.. .|+||=.-++|.|||.++..+..    +.|.+|+-||++|-
T Consensus         7 L~~~~~~as~~----~~r-----~~~~p~~~~n~Rg~t-aG~ayL~~~~I~lNP~ll~en~~----~f~~~vV~HELaHl   72 (156)
T COG3091           7 LQQCVEQASLK----FFR-----KFFRPKASYNQRGRT-AGGAYLLKSEIRLNPKLLEENGE----DFIEQVVPHELAHL   72 (156)
T ss_pred             HHHHHHHHHHH----hcC-----CCCCcceehhhhhhh-cchhhccccccccCHHHHHHccH----HHHHHHHHHHHHHH
Confidence            34666666654    221     112235666666542 69999776699999999998854    47899999999998


Q ss_pred             hccCCCCCCCCcchhhhHHHHHHHhhCc
Q 036780          130 WQWNGNNAPNIGWLIEGIADFVRLKANY  157 (231)
Q Consensus       130 ~Q~~~~g~~aP~~liEGIADyVRl~ag~  157 (231)
                      .-|.-.|...|-+     .||=.+....
T Consensus        73 ~ly~~~gr~~phg-----~ewk~lm~qV   95 (156)
T COG3091          73 HLYQEFGRYKPHG-----KEWKLLMQQV   95 (156)
T ss_pred             HHHHHcCCCCCCc-----hhHHHHHHHh
Confidence            7664444336654     4666555443

>PF13203 DUF2201_N: Putative metallopeptidase domain

Probab=95.82  E-value=0.011  Score=53.18  Aligned_cols=38  Identities=24%  Similarity=0.469  Sum_probs=32.4

Q ss_pred             ceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhc
Q 036780           90 EIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQ  131 (231)
Q Consensus        90 GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q  131 (231)
                      ..++|.|..|.|||.|+.+.+    ..|+.+||.||+.||.-
T Consensus        36 ~t~~tDg~~l~~nP~~~~~l~----~~~~~~~l~HevlH~~~   73 (292)
T PF13203_consen   36 PTAATDGRRLYYNPEFLESLS----PEERVGLLLHEVLHCLL   73 (292)
T ss_pred             ceeeEcCcEEEECcHHHhcCC----HHHHHHHHHHHHHHHHc
Confidence            567888999999999998875    34788999999999983

>PRK04351 hypothetical protein; Provisional

Probab=95.67  E-value=0.034  Score=46.57  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             eEEEEEeccCCCceEE-eeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccC-CCCCCCCc
Q 036780           78 QVDLFIDDMKPGEIAF-TSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWN-GNNAPNIG  141 (231)
Q Consensus        78 ~Vtl~l~d~~~~GVA~-t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~-~~g~~aP~  141 (231)
                      +|++..+-. -.|.+| -....|.|||..+..++.    .++.+||.|||+|...|. |.|. .|.
T Consensus        25 ~v~~n~Rlr-ttgG~~~l~~~~I~lnp~ll~~~~~----~~l~~vv~HElcH~~~~~~g~g~-~h~   84 (149)
T PRK04351         25 QAYFNKRLR-TTGGRYLLKDHHIEFNPKMLEEYGL----EELIGIIKHELCHYHLHLEGKGY-QHR   84 (149)
T ss_pred             EEEEeccch-hhhheeecCCCeEEeCHHHHhhccH----HHHHhhHHHHHHHHHHHHHCCCC-CCC
Confidence            677665532 146666 456799999999988764    368899999999998874 4443 443

>PRK03072 heat shock protein HtpX; Provisional

Probab=95.19  E-value=0.03  Score=51.08  Aligned_cols=52  Identities=21%  Similarity=0.420  Sum_probs=36.6

Q ss_pred             CeEEEEEeccCCCceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCC
Q 036780           77 PQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGN  135 (231)
Q Consensus        77 ~~Vtl~l~d~~~~GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~  135 (231)
                      .+| +++++-  ..-|+++|.     .|.++...++..+    .+|+.|||.||+.|+-+++-.
T Consensus        88 p~v-yv~~~~--~~NAFa~G~~~~~~~v~vt~gLl~~l~----~~El~aVlAHElgHi~~~d~~  144 (288)
T PRK03072         88 PRL-YISPTA--APNAFATGRNPRNAAVCCTEGILQILN----ERELRGVLGHELSHVYNRDIL  144 (288)
T ss_pred             CCE-EEecCC--CCceEEecCCCCCcEEEecHHHHHhCC----HHHHHHHHHHHHHHHhcCCHH
Confidence            344 334443  345888774     4777888777764    469999999999999986643

>smart00731 SprT SprT homologues

Probab=94.98  E-value=0.016  Score=47.65  Aligned_cols=51  Identities=10%  Similarity=0.083  Sum_probs=35.2

Q ss_pred             eEEEEEeccCCCceEEee-CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccC
Q 036780           78 QVDLFIDDMKPGEIAFTS-NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWN  133 (231)
Q Consensus        78 ~Vtl~l~d~~~~GVA~t~-g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~  133 (231)
                      .|++.-+ |.-.|-++.. ..+|.||+..+...+.    .++.+||.|||+|.+.+.
T Consensus        23 ~i~w~~r-~~~~~G~~~~~~~~I~ln~~l~~~~~~----~~l~~~l~HEm~H~~~~~   74 (146)
T smart00731       23 KVVWNKR-LRKTGGRCLLKSAEIRLNPKLLTENGR----DRLRETLLHELCHAALYL   74 (146)
T ss_pred             EEEEehh-hhhhhHHhhcCCCEEEeCHHHHhhccH----HHHHhhHHHHHHHHHHHH
Confidence            5555533 2112334443 5699999999987653    357889999999999873

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=94.98  E-value=0.069  Score=45.17  Aligned_cols=41  Identities=20%  Similarity=0.375  Sum_probs=31.9

Q ss_pred             EEeeC-Ce---EEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCC
Q 036780           92 AFTSN-NG---IHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNN  136 (231)
Q Consensus        92 A~t~g-~~---I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g  136 (231)
                      |++.| +.   |.++...+...+    .+|+.+||.||+.|+.+++..-
T Consensus        63 A~~~g~~~~~~I~v~~~ll~~~~----~~el~aVlaHElgH~~~~h~~~  107 (226)
T PF01435_consen   63 AFATGGGPRKRIVVTSGLLESLS----EDELAAVLAHELGHIKHRHILK  107 (226)
T ss_dssp             EEEETTTC--EEEEEHHHHHHSS----HHHHHHHHHHHHHHHHTTHCCC
T ss_pred             EEEEccCCCcEEEEeChhhhccc----HHHHHHHHHHHHHHHHcCCcch
Confidence            56554 34   999999986654    4599999999999999876644

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>PRK01345 heat shock protein HtpX; Provisional

Probab=94.88  E-value=0.047  Score=50.59  Aligned_cols=41  Identities=27%  Similarity=0.461  Sum_probs=33.2

Q ss_pred             ceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           90 EIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        90 GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      --|+++|.     .|.++...++..+    .+|+.+||.|||.|+-+++.
T Consensus        95 ~NAFa~G~~~~~~~V~vt~gLL~~L~----~dEL~aVlAHElgHi~~~d~  140 (317)
T PRK01345         95 PNAFATGRNPENAAVAATTGLLQRLS----PEEVAGVMAHELAHVKNRDT  140 (317)
T ss_pred             cceEEecCCCCCeEEEechHHHhhCC----HHHHHHHHHHHHHHHHcCCH
Confidence            35777753     6999999998774    35999999999999998664

>PRK05457 heat shock protein HtpX; Provisional

Probab=94.80  E-value=0.056  Score=49.32  Aligned_cols=53  Identities=21%  Similarity=0.410  Sum_probs=37.6

Q ss_pred             CCCeEEEEEeccCCCceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           75 NIPQVDLFIDDMKPGEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        75 ~v~~Vtl~l~d~~~~GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      |..+|-+. ++-  .--|+++|.     .|.++...++..+    ++|+.||+.||+.|+-.++-
T Consensus        93 p~p~v~v~-~~~--~~NAfa~G~~~~~~~V~vt~gLl~~L~----~~El~aVlAHElgHi~~~d~  150 (284)
T PRK05457         93 GMPEVAIY-HSP--EINAFATGASKNNSLVAVSTGLLQNMS----RDEVEAVLAHEISHIANGDM  150 (284)
T ss_pred             CCCCEEEE-eCC--CceEEEecCCCCCeEEEeehHHhhhCC----HHHHHHHHHHHHHHHHcCCH
Confidence            34455433 332  346777762     5789988888874    46999999999999988653

>PRK03001 M48 family peptidase; Provisional

Probab=94.78  E-value=0.055  Score=48.97  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             ceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           90 EIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        90 GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      --|++.|.     .|.++...++..+    .+|+.+||.||+.|+-.++-
T Consensus        95 ~NAfa~G~~~~~~~Ivvt~gLl~~l~----~~El~aVlAHElgHi~~~h~  140 (283)
T PRK03001         95 PNAFATGRNPEHAAVAATTGILRVLS----EREIRGVMAHELAHVKHRDI  140 (283)
T ss_pred             cceEEecCCCCCeEEEecHHHHhhCC----HHHHHHHHHHHHHHHhCCCh
Confidence            35777652     6999999998874    46999999999999997654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=94.69  E-value=0.088  Score=51.60  Aligned_cols=50  Identities=24%  Similarity=0.374  Sum_probs=39.5

Q ss_pred             eEEEEEeccCCCce-EEe-eCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhcc
Q 036780           78 QVDLFIDDMKPGEI-AFT-SNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQW  132 (231)
Q Consensus        78 ~Vtl~l~d~~~~GV-A~t-~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~  132 (231)
                      .+||++-+-  +.+ |++ .|+.|.+++..+-...   -..|+.|||.||+.||-|.
T Consensus        93 ~f~f~lV~d--~~iNAFA~~Gg~v~vntGLll~ae---~esElagViAHEigHv~qr  144 (484)
T COG4783          93 PFTFFLVND--DSINAFATPGGYVVVNTGLLLTAE---NESELAGVIAHEIGHVAQR  144 (484)
T ss_pred             CeEEEEecC--CccchhhcCCceEEEehHHHHhcC---CHHHHHHHHHHHHHHHhhh
Confidence            478877654  666 665 4999999999887652   3568999999999999984

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=94.60  E-value=0.22  Score=42.75  Aligned_cols=49  Identities=16%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             hhhHHHHHHHHhhhhhhccCCCCCCCC-------cchhhhHHHHHHH-hhCcCC-CCCC
Q 036780          114 IKQEFSGVMYHEMTHVWQWNGNNAPNI-------GWLIEGIADFVRL-KANYVP-EGWA  163 (231)
Q Consensus       114 ~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP-------~~liEGIADyVRl-~ag~~~-~~w~  163 (231)
                      ...+|..+|.||..|++++...+. .|       .-+.||+|++.-. ..|-.+ +.|.
T Consensus        61 ~~~~l~~~iaHE~hH~~r~~~~~~-~~~~~TLld~~I~EGlAe~f~~~~~g~~~~~~w~  118 (195)
T PF10026_consen   61 SLEELPALIAHEYHHNCRYEQIGW-DPEDTTLLDSLIMEGLAEYFAEELYGEEYLGPWV  118 (195)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccCC-CCCCCCHHHHHHHhhHHHHHHHHHcCCCCCchhh
Confidence            455899999999999998876553 22       3478999998644 445433 4444

>PRK04897 heat shock protein HtpX; Provisional

Probab=94.18  E-value=0.069  Score=48.92  Aligned_cols=53  Identities=25%  Similarity=0.495  Sum_probs=38.6

Q ss_pred             CCCeEEEEEeccCCCceEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           75 NIPQVDLFIDDMKPGEIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        75 ~v~~Vtl~l~d~~~~GVA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      |..+|-+ +++-  ..-|+++|     ..|.++...++..+    ++|+.+||.||+.|+-.++-
T Consensus        96 p~p~v~v-~~~~--~~NAfa~G~~~~~~~v~vt~gLl~~l~----~~El~aVlAHElgHi~~~d~  153 (298)
T PRK04897         96 PMPRVFI-IDDP--SPNAFATGSSPKNAAVAVTTGLLAIMN----REELEGVIGHEISHIRNYDI  153 (298)
T ss_pred             CCCcEEE-ecCC--CCceEEeccCCCCcEEEeehHHHhhCC----HHHHHHHHHHHHHHHhcCCH
Confidence            3445643 3443  45688776     26889988888874    46999999999999987654

>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=0.19  Score=52.63  Aligned_cols=106  Identities=25%  Similarity=0.368  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhhc---CCchhhhhHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQN---IPVDLIKQEFSGVMY  123 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~~---~~~d~~~~ei~Gvl~  123 (231)
                      .+|-++-.....|.+.+|.-+-  |-+   ++-++ |-|+  ..-|.-.-+-|++....+--   .+....+..|.+|+.
T Consensus       257 ~~al~~~~~~L~~~e~~f~i~y--PLp---K~D~iavPdf--~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIa  329 (882)
T KOG1046|consen  257 QFALEVATKVLEFYEDYFGIPY--PLP---KLDLVAVPDF--SAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIA  329 (882)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC--CCc---cccEEecCCc--cccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHH
Confidence            4455665666777777775333  223   34433 2243  22233233455555444422   222236888999999


Q ss_pred             HhhhhhhccCCCCCCCCc----chhhhHHHHHHHhh-CcCCCCC
Q 036780          124 HEMTHVWQWNGNNAPNIG----WLIEGIADFVRLKA-NYVPEGW  162 (231)
Q Consensus       124 HE~~Hv~Q~~~~g~~aP~----~liEGIADyVRl~a-g~~~~~w  162 (231)
                      ||++|-|  -|+=....+    ||=||.|+|+-..+ ....+.|
T Consensus       330 HElAHQW--FGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~  371 (882)
T KOG1046|consen  330 HELAHQW--FGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEW  371 (882)
T ss_pred             HHHHHHH--hcCcccHhhhhhhhhcccHHHHHHHHhhccCCcch
Confidence            9999955  454321444    59999999998876 2234555

>PRK03982 heat shock protein HtpX; Provisional

Probab=94.01  E-value=0.11  Score=47.19  Aligned_cols=41  Identities=22%  Similarity=0.409  Sum_probs=32.9

Q ss_pred             ceEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           90 EIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        90 GVA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      --|+++|     ..|.++...++..+    ++|+.+||.||+.|+-..+.
T Consensus        96 ~NAfa~G~~~~~~~V~vt~gLl~~l~----~~El~AVlAHElgHi~~~h~  141 (288)
T PRK03982         96 PNAFATGRDPKHAVVAVTEGILNLLN----EDELEGVIAHELTHIKNRDT  141 (288)
T ss_pred             cceEEeccCCCCeEEEeehHHHhhCC----HHHHHHHHHHHHHHHHcCCH
Confidence            3678775     25779999998774    46999999999999998654

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=0.055  Score=48.08  Aligned_cols=35  Identities=14%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCC
Q 036780           97 NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGN  135 (231)
Q Consensus        97 ~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~  135 (231)
                      ..|.++...++..+    .+|+.+||.||+.|+-..+..
T Consensus       140 ~~V~vt~gLl~~l~----~dEl~aVlaHElgHi~~rd~~  174 (302)
T COG0501         140 GRVVVTTGLLDLLN----DDELEAVLAHELGHIKNRHTL  174 (302)
T ss_pred             eeEEecHHHHhhCC----HHHHHHHHHHHHHHHhcccHH
Confidence            49999999999664    459999999999999875543

>PRK02391 heat shock protein HtpX; Provisional

Probab=93.79  E-value=0.096  Score=48.11  Aligned_cols=42  Identities=19%  Similarity=0.310  Sum_probs=33.6

Q ss_pred             CceEEeeCC-----eEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           89 GEIAFTSNN-----GIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        89 ~GVA~t~g~-----~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      ..-|+++|.     .|.++...++..+    .+|+.+|+.||+.|+-+.+-
T Consensus       103 ~~NAfa~G~~~~~~~V~vt~gLl~~L~----~~El~aVlaHElgHi~~~di  149 (296)
T PRK02391        103 VPNAFATGRSPKNAVVCVTTGLMRRLD----PDELEAVLAHELSHVKNRDV  149 (296)
T ss_pred             CCceEEecCCCCCcEEEecHHHHhhCC----HHHHHHHHHHHHHHHHcCCH
Confidence            457888763     5888888888774    46999999999999998764

>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.54  E-value=1.1  Score=42.84  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHhhhhhhccCCCC------CCCCcchhhhHHHHHHHhhCcCC------------CCCCC------------
Q 036780          115 KQEFSGVMYHEMTHVWQWNGNN------APNIGWLIEGIADFVRLKANYVP------------EGWAK------------  164 (231)
Q Consensus       115 ~~ei~Gvl~HE~~Hv~Q~~~~g------~~aP~~liEGIADyVRl~ag~~~------------~~w~~------------  164 (231)
                      ...+.+.|.||..|+.-++-++      ..-.-||=||++...-.-++..+            +.|..            
T Consensus       136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~~~~~~~~~~l~~  215 (366)
T PF10460_consen  136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNNYTSGNYNCSLTA  215 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhhccccCCCcceee
Confidence            3457899999999999665432      11578999998866433332221            01111            


Q ss_pred             -CCCCCCcccCcchhHhHHHHHHh-ccCCcHHHHHHHHHhccCCHHHH----HHH-hCCCHHHHHHHHHHHh
Q 036780          165 -PGEGTMWNQGHSSVAARFLDYCN-DLRNGFVAELNKKMRDGYNDNFF----MEL-LGKSIDQLWNDYKAKY  229 (231)
Q Consensus       165 -p~~g~~wd~gY~~~TA~FL~wle-~~~~gfV~~LN~~mr~~ys~~~~----~~~-~G~~v~~LW~eY~~~~  229 (231)
                       +..+..+ .+| ..+.-|..||. ..+.+|++++=..-...=+.+..    +.+ .|.+.++|-.++..+.
T Consensus       216 w~~~g~~l-~sY-s~s~~Fg~~L~rQ~G~~~~~~~l~~~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~  285 (366)
T PF10460_consen  216 WSSFGDSL-ASY-SSSYSFGAYLYRQYGGDFYKKLLTNSSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL  285 (366)
T ss_pred             cCCCcccc-ccc-hhHHHHHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence             1112222 469 89999999998 67788877643322111111222    223 2467777777776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.

>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type

Probab=93.04  E-value=0.28  Score=51.35  Aligned_cols=96  Identities=20%  Similarity=0.304  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhhcC---CchhhhhHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQNI---PVDLIKQEFSGVMY  123 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~~~---~~d~~~~ei~Gvl~  123 (231)
                      +++.+.+..+..+.+..|.++=|.  +   +..++ +.+++..  |.-.-+-|.|+..++-..   ..+.-...+.+|+.
T Consensus       216 ~~al~~~~~~L~~~E~~fG~pYPl--~---k~diVavpdf~~G--aMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIa  288 (863)
T TIGR02414       216 DHAMESLKKAMKWDEEVFGLEYDL--D---IFMIVAVDDFNMG--AMENKGLNIFNSKYVLADPETATDADYERIESVIA  288 (863)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCh--h---hccEEecCCCCCc--cccccceeccccceEEeCCCCCCHHHHHHHHHHHH
Confidence            456778888888888888643322  2   33333 2333112  221122444554444211   12323456789999


Q ss_pred             HhhhhhhccCCCCCCCCc----chhhhHHHHHH
Q 036780          124 HEMTHVWQWNGNNAPNIG----WLIEGIADFVR  152 (231)
Q Consensus       124 HE~~Hv~Q~~~~g~~aP~----~liEGIADyVR  152 (231)
                      ||++|-|  .|+-..+-+    ||-||.|.|.-
T Consensus       289 HElaHqW--fGNlVT~~~W~~LWLnEGfAty~e  319 (863)
T TIGR02414       289 HEYFHNW--TGNRVTCRDWFQLSLKEGLTVFRD  319 (863)
T ss_pred             HHHHHHH--hcceeeecchhhhhhhhhHHHHHH
Confidence            9999966  455431222    58999998763

The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.

>PRK02870 heat shock protein HtpX; Provisional

Probab=93.01  E-value=0.14  Score=47.99  Aligned_cols=52  Identities=25%  Similarity=0.403  Sum_probs=37.5

Q ss_pred             CCeEEEEEeccCCCceEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           76 IPQVDLFIDDMKPGEIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        76 v~~Vtl~l~d~~~~GVA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      ..+|-+ +++-  .--|+++|     ..|.++...++..+    ++|+.|||.|||.|+-.++-
T Consensus       133 ~p~V~v-i~~~--~~NAFA~G~~~~~~~Ivvt~GLL~~L~----~dEL~aVlAHELgHik~~di  189 (336)
T PRK02870        133 MPKVYI-IDAP--YMNAFASGYSEKSAMVAITTGLLEKLD----RDELQAVMAHELSHIRHGDI  189 (336)
T ss_pred             CCeEEE-EcCC--CCceEEecCCCCCcEEEEehHHhhhCC----HHHHHHHHHHHHHHHHcccH
Confidence            345544 3432  34577765     38999999998774    46999999999999976554

>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria

Probab=92.99  E-value=0.058  Score=44.17  Aligned_cols=32  Identities=31%  Similarity=0.509  Sum_probs=24.0

Q ss_pred             HHHHHhhhhhhccCCCC----CCCCcchhhhHHHHH
Q 036780          120 GVMYHEMTHVWQWNGNN----APNIGWLIEGIADFV  151 (231)
Q Consensus       120 Gvl~HE~~Hv~Q~~~~g----~~aP~~liEGIADyV  151 (231)
                      ..+.||.+|-.-.|-.-    ...|-|+.||||.|-
T Consensus         3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yF   38 (128)
T PF07607_consen    3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYF   38 (128)
T ss_pred             hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHc
Confidence            47899999987543321    128999999999984

>PRK01265 heat shock protein HtpX; Provisional

Probab=91.50  E-value=0.28  Score=45.90  Aligned_cols=40  Identities=20%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             ceEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccC
Q 036780           90 EIAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWN  133 (231)
Q Consensus        90 GVA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~  133 (231)
                      .-|+++|     ..|.++...++..+    ++|+.+|+.||+.|+-..+
T Consensus       111 ~NAfa~G~~~~~~~Ivvt~gLl~~l~----~~El~aVlAHElgHik~~d  155 (324)
T PRK01265        111 PNAFAYGSPIAGKRIAITLPLLKILN----RDEIKAVAGHELGHLKHRD  155 (324)
T ss_pred             CCeEEeccCCCCCEEEEehHHHhhCC----HHHHHHHHHHHHHHHHccc
Confidence            4566654     38999999998875    4699999999999976543

>PRK14015 pepN aminopeptidase N; Provisional

Probab=90.74  E-value=0.72  Score=48.45  Aligned_cols=96  Identities=21%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEeeCCeEEEcchhhhcCC---chhhhhHHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIP---VDLIKQEFSGVMYH  124 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~---~d~~~~ei~Gvl~H  124 (231)
                      +++.+.+..+..+.+.+|.++=|.  +...-|  .+.+++..  |.-.-+-|.|+..++-..+   .+.-...+.+|+.|
T Consensus       229 ~~al~~~~~~L~~~E~~FG~pYP~--~k~diV--avp~f~~G--aMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaH  302 (875)
T PRK14015        229 DHAMDSLKKSMKWDEERFGLEYDL--DIFMIV--AVDDFNMG--AMENKGLNIFNSKYVLADPETATDADYERIESVIAH  302 (875)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCh--hhhCEE--eCCCCCCc--ccccccccccccceEecCcccCCHHHHHHHHHHHHH
Confidence            345667777888888888643322  222222  23343112  2222224445555442111   12123457899999


Q ss_pred             hhhhhhccCCCCCCCC----cchhhhHHHHH
Q 036780          125 EMTHVWQWNGNNAPNI----GWLIEGIADFV  151 (231)
Q Consensus       125 E~~Hv~Q~~~~g~~aP----~~liEGIADyV  151 (231)
                      |++|-|  .|+...+-    -||-||.|-|.
T Consensus       303 ElaHqW--FGNlVT~~~W~dLWLnEGFAty~  331 (875)
T PRK14015        303 EYFHNW--TGNRVTCRDWFQLSLKEGLTVFR  331 (875)
T ss_pred             HHHHHH--HhCcceecchhhhhhhhHHHHHH
Confidence            999976  45554122    36899999887

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.34  E-value=0.61  Score=42.01  Aligned_cols=104  Identities=14%  Similarity=0.256  Sum_probs=62.1

Q ss_pred             CeEEEEEeccCCCceEEeeC---CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCCCCCCcchhhhHHHHHHH
Q 036780           77 PQVDLFIDDMKPGEIAFTSN---NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNAPNIGWLIEGIADFVRL  153 (231)
Q Consensus        77 ~~Vtl~l~d~~~~GVA~t~g---~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~aP~~liEGIADyVRl  153 (231)
                      +++.+.+.+.  --..++.|   -.|.++.+..++.++    .|+.-||.||++|+-+.|.        +..-++..+..
T Consensus       158 ~~~~i~~s~~--i~sP~~~G~~~p~I~lP~~~~~~~~~----~el~~il~HEl~Hikr~D~--------~~~~l~~l~~~  223 (299)
T PF05569_consen  158 RPIRIRVSSG--ISSPFVFGFLRPVIVLPESLLEDLSE----EELRAILLHELAHIKRRDL--------LWKLLAELLCA  223 (299)
T ss_pred             CceEEEEcCC--CCCCeeecCcceEEEecCccccccCH----HHHHHHHHHHHHHHHCCCh--------HHHHHHHHHHH
Confidence            4566665543  22345556   389999888777753    3677899999999998776        44455555554


Q ss_pred             hhCcCCCCCCCCCCCCCcccCcchhHhHHHHHHh-ccCCcHHHHHHHHHhccCCHH
Q 036780          154 KANYVPEGWAKPGEGTMWNQGHSSVAARFLDYCN-DLRNGFVAELNKKMRDGYNDN  208 (231)
Q Consensus       154 ~ag~~~~~w~~p~~g~~wd~gY~~~TA~FL~wle-~~~~gfV~~LN~~mr~~ys~~  208 (231)
                      -      ||-.|.-       | -...++-..+| ..|...++.+|..-+..|...
T Consensus       224 l------~WfnP~~-------~-~~~~~~~~~~E~~cD~~vl~~l~~~~~~~Y~~~  265 (299)
T PF05569_consen  224 L------HWFNPLV-------W-LLRRRIRRDRELACDEAVLRNLGKEERKAYAET  265 (299)
T ss_pred             H------HHhhHHH-------H-HHHHHHHHHHHHhhhHHHHHhcCchhHHHHHHH
Confidence            3      4545531       2 23334444555 456666666555444445443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase

Probab=88.43  E-value=1.8  Score=37.48  Aligned_cols=101  Identities=14%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCC-----CceEEeeCCeEEEcchhhhcCCchhhhhHHHHH
Q 036780           47 AEYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKP-----GEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGV  121 (231)
Q Consensus        47 ~~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~-----~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gv  121 (231)
                      .++|.++|......|..+....    +-.|.+    |..|.|     -|.-+-.|.+|.+-.+.=.. ..=.--..|.+|
T Consensus        15 ~~~A~~lL~rlA~~v~pIM~~~----~~~V~~----L~E~~P~~~~llG~N~N~G~~I~lrLR~~~~-~~fl~~~~i~~t   85 (186)
T PF08325_consen   15 EEEALELLERLAADVKPIMRKH----GWRVGS----LEEFYPNGERLLGLNVNKGEKICLRLRTPDD-GGFLPYETILGT   85 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc----CcccCe----eeccCCCCCCCcceecCCCcEEEEEeCCCCC-CCEeeHHHHHHH
Confidence            4678888888877777666311    011111    222211     34444457788876554332 111124579999


Q ss_pred             HHHhhhhhhccCCCCCCCCcchhhhH-HHHHHHhh-CcC
Q 036780          122 MYHEMTHVWQWNGNNAPNIGWLIEGI-ADFVRLKA-NYV  158 (231)
Q Consensus       122 l~HE~~Hv~Q~~~~g~~aP~~liEGI-ADyVRl~a-g~~  158 (231)
                      +.|||+||+ +.+.+. .++-+..-| .++..+.. ||.
T Consensus        86 ~lHELaH~~-~~~H~~-~F~~l~~~l~~e~~~l~~~G~~  122 (186)
T PF08325_consen   86 MLHELAHNV-HGPHDD-KFWKLLDELRKECEELDAKGYT  122 (186)
T ss_pred             HHHHHHhcc-cCCccH-HHHHHHHHHHHHHHHHHhcCCc
Confidence            999999998 455665 555444333 23444444 554

Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.

>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length

Probab=88.27  E-value=0.46  Score=42.16  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=27.7

Q ss_pred             HHHHHHhhhhhhcc-CCCCCCCCcchhhhHHHHHHH
Q 036780          119 SGVMYHEMTHVWQW-NGNNAPNIGWLIEGIADFVRL  153 (231)
Q Consensus       119 ~Gvl~HE~~Hv~Q~-~~~g~~aP~~liEGIADyVRl  153 (231)
                      -.+|.|||+|+|.+ +|... -|..+-|||...+.+
T Consensus        94 gsiLAHE~mHa~Lrl~g~~~-L~~~vEEGiCqvla~  128 (212)
T PF12315_consen   94 GSILAHELMHAWLRLNGFPN-LSPEVEEGICQVLAY  128 (212)
T ss_pred             hhHHHHHHHHHHhcccCCCC-CChHHHHHHHHHHHH
Confidence            45899999999986 44444 688999999998865

The family is found in association with PF00412 from PFAM.

>PHA02456 zinc metallopeptidase motif-containing protein

Probab=85.36  E-value=0.58  Score=38.14  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCC
Q 036780           97 NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNN  136 (231)
Q Consensus        97 ~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g  136 (231)
                      .=|.++|+|-++-.        +.-|.||+.|+||+...|
T Consensus        66 ~~i~IDP~~~~KGC--------~~TL~HEL~H~WQ~RsYG   97 (141)
T PHA02456         66 GWIEIDPDYANKGC--------RDTLAHELNHAWQFRTYG   97 (141)
T ss_pred             eEEEECCcccccch--------HHHHHHHHHHHHhhhccc
Confidence            35666676644433        347999999999987765

>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase

Probab=82.65  E-value=0.92  Score=45.56  Aligned_cols=33  Identities=33%  Similarity=0.584  Sum_probs=23.8

Q ss_pred             HHHHHHhhhhhhccCCCCC----CCCcchhhhHHHHHHH
Q 036780          119 SGVMYHEMTHVWQWNGNNA----PNIGWLIEGIADFVRL  153 (231)
Q Consensus       119 ~Gvl~HE~~Hv~Q~~~~g~----~aP~~liEGIADyVRl  153 (231)
                      ..|+.|||+|.|=  |+-.    ..--||=||.|.|+-.
T Consensus       280 ~~viaHElAHqWf--GNlVT~~~W~d~WLnEGfaty~e~  316 (601)
T TIGR02411       280 VDVIAHELAHSWS--GNLVTNCSWEHFWLNEGWTVYLER  316 (601)
T ss_pred             hhhHHHHHHhhcc--CceeecCCchHHHHHhhHHHHHHH
Confidence            4799999999764  4432    1234899999999744

Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.

>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]

Probab=82.19  E-value=4.6  Score=42.31  Aligned_cols=171  Identities=18%  Similarity=0.303  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEeccCCCceEEeeCCeEEEcchhhhcCC---chhhhhHHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDMKPGEIAFTSNNGIHYGDDFIQNIP---VDLIKQEFSGVMYH  124 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~~~~GVA~t~g~~I~~s~~~i~~~~---~d~~~~ei~Gvl~H  124 (231)
                      .++-..+.....|.+..|..+-|-++     .-+.+.+++..|  .=.-+-|.|...|+-..+   .|....-+.-|+.|
T Consensus       241 ~~~~~~~~~~~~~~e~~fg~~y~l~~-----~~V~v~~f~~Ga--MEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaH  313 (859)
T COG0308         241 KYALDETKRSIEFYEEYFGLPYALPI-----DIVAVPDFSAGA--MENWGLVTFREKYLLADPETATDSDYENVEEVIAH  313 (859)
T ss_pred             hhhHHHHHHHhhhHHHhcCCCCCCcc-----cEEeccCCCCcc--ccccceeEEeeeEEeeCcccchhHHHHHHHHHHHH
Confidence            45566777777888887765544444     333344442111  111124455555442221   22233455669999


Q ss_pred             hhhhhhccCCCCCCC----CcchhhhHHHHHHHh--hCcCCCCC----------------------CCCCC---------
Q 036780          125 EMTHVWQWNGNNAPN----IGWLIEGIADFVRLK--ANYVPEGW----------------------AKPGE---------  167 (231)
Q Consensus       125 E~~Hv~Q~~~~g~~a----P~~liEGIADyVRl~--ag~~~~~w----------------------~~p~~---------  167 (231)
                      |+.|-|  .|+-.-+    --||=||.|-|+-.+  ..+.+.+|                      ..|-.         
T Consensus       314 ElaHqW--fGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei  391 (859)
T COG0308         314 ELAHQW--FGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEI  391 (859)
T ss_pred             HHhhhc--ccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccch
Confidence            999966  4442113    368999999996332  12222222                      11211         


Q ss_pred             CCCcc-cCcchhHhHHHHHHhcc--CCcHHHHHHHHHhcc-C----CHHH---HHHHhCCCHHHHHHHHHHH
Q 036780          168 GTMWN-QGHSSVAARFLDYCNDL--RNGFVAELNKKMRDG-Y----NDNF---FMELLGKSIDQLWNDYKAK  228 (231)
Q Consensus       168 g~~wd-~gY~~~TA~FL~wle~~--~~gfV~~LN~~mr~~-y----s~~~---~~~~~G~~v~~LW~eY~~~  228 (231)
                      .+.|| -.| .-.|..|.=++.+  ...|.+-|-.-++.. |    .+++   ..+..|+++...+..|...
T Consensus       392 ~~~fD~i~Y-~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q  462 (859)
T COG0308         392 NDFFDAIVY-EKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQ  462 (859)
T ss_pred             hhhcchhhc-chhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhC
Confidence            22344 246 5667777777732  334555455444432 2    3444   4677899999888777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2y3u_A	785	Collagenase, collagenase G; hydrolase, gluzincin,	96.13
2gtq_A	867	Aminopeptidase N; alanine aminopeptidase, M1 famil	95.67
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	95.65
1z5h_A	780	Tricorn protease interacting factor F3; zinc amino	95.41
2xdt_A	897	Endoplasmic reticulum aminopeptidase 1; glycoprote	95.22
3se6_A	967	Endoplasmic reticulum aminopeptidase 2; thermolysi	95.13
4fke_A	909	Aminopeptidase N; zinc aminopeptidase, hydrolase;	94.91
3ebh_A	889	PFA-M1, M1 family aminopeptidase; hydrolase, metal	94.4
4fgm_A	597	Aminopeptidase N family protein; structural genomi	94.32
3u9w_A	608	Leukotriene A-4 hydrolase; hydrolase-hydrolase inh	94.31
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	93.96
3cia_A	605	Cold-active aminopeptidase; psychrohilic, hydrolas	93.81
3b34_A	891	Aminopeptidase N; protease, hydrolase, thermolysin	93.46
2xq0_A	632	LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B	87.72
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	82.29

>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*

Probab=96.13  E-value=0.0074  Score=60.88  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             HHHHhhhhhhcc-----CCCC------CCCCcchhhhHHHHHHHh---hCcC------------C-CCCCCCC--CCCCc
Q 036780          121 VMYHEMTHVWQW-----NGNN------APNIGWLIEGIADFVRLK---ANYV------------P-EGWAKPG--EGTMW  171 (231)
Q Consensus       121 vl~HE~~Hv~Q~-----~~~g------~~aP~~liEGIADyVRl~---ag~~------------~-~~w~~p~--~g~~w  171 (231)
                      .|.||.||..+-     ..-+      ...|.|++||+|+|+-..   .|+.            | .+|..-.  -..+|
T Consensus       425 ~f~HEytHyLdgRy~~~G~f~~~~~y~~~~~vW~~EG~AEY~s~~~r~~~~~~~~~~v~~i~~~~~~~~~~ls~il~~~Y  504 (785)
T 2y3u_A          425 LFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAGSTRTSGVLPRKLILGYLAKDKVDHRYSLKKTLNSGY  504 (785)
T ss_dssp             HHHHHHHHHHHHHHTSCSSTTSSGGGTTTCSHHHHHHHHHHHTTBCSSSCBCCBHHHHHHHCSCCTTTSCCHHHHHCC--
T ss_pred             cccchhhhccccccccccccccCcccccCCCceehhhHHHHHhcCcccCCcccchhhhcccccCcccCCccHHHHhhhhc
Confidence            678999999952     1111      116899999999999542   2321            1 1111000  00112


Q ss_pred             ----ccCcchhHhHHHHHHhccCCcHHHHHHHHHhcc-CCH-HHHHHHhCC
Q 036780          172 ----NQGHSSVAARFLDYCNDLRNGFVAELNKKMRDG-YND-NFFMELLGK  216 (231)
Q Consensus       172 ----d~gY~~~TA~FL~wle~~~~gfV~~LN~~mr~~-ys~-~~~~~~~G~  216 (231)
                          +.-| +..=-|..||-.++|.-+++|...+|.+ |.. +.+.+-+|.
T Consensus       505 ~~~~~r~Y-~~gyl~v~fL~e~hp~~~~~ll~~~R~gd~~~y~~~i~~~~~  554 (785)
T 2y3u_A          505 DDSDWMFY-NYGFAVAHYLYEKDMPTFIKMNKAILNTDVKSYDEIIKKLSD  554 (785)
T ss_dssp             CCCCTHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCcee-cHHHHHHHHHHhcCHHHHHHHHHHHHcCChHHHHHHHHHhcc
Confidence                1226 6666777888888999999999999998 644 444455553

>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}

Probab=95.67  E-value=0.041  Score=55.70  Aligned_cols=95  Identities=19%  Similarity=0.223  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhhcC---CchhhhhHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQNI---PVDLIKQEFSGVMY  123 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~~~---~~d~~~~ei~Gvl~  123 (231)
                      +++.+.+..+..+.+..|..+-     |..+..++ +.++  ..-|.-.-+-|.|+..++-..   ..+.-+..+..|+.
T Consensus       220 ~~al~~~~~~l~~~e~~fG~pY-----P~~k~d~Vavpdf--~~GaMEn~glitf~e~~ll~~~~~~~~~~~~~i~~vIa  292 (867)
T 2gtq_A          220 GFAVESLKNAMKWDETRFGLEY-----DLDIFMVVAVGDF--NMGAMENKGLNIFNTKFVLADSRTATDTDFEGIESVVG  292 (867)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCC-----CSSEEEEEEESSC--SSSEECCTTEEEEEGGGTCCCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC-----CCcceeEEEcCCC--CccccccCCceeecccccccCcccCcHHHHHHHHHHHH
Confidence            4566777778888888885322     33455544 3344  222444445667776665322   22334567889999


Q ss_pred             HhhhhhhccCCCCCC----CCcchhhhHHHHH
Q 036780          124 HEMTHVWQWNGNNAP----NIGWLIEGIADFV  151 (231)
Q Consensus       124 HE~~Hv~Q~~~~g~~----aP~~liEGIADyV  151 (231)
                      ||++|-|  .|+-..    .--||-||+|.|.
T Consensus       293 HElAHqW--fGnlVT~~~W~dlWLnEGfAty~  322 (867)
T 2gtq_A          293 HEYFHNW--TGNRVTCRDWFQLSLKEGLTVFR  322 (867)
T ss_dssp             HHHHTTT--BTTTBEESSGGGHHHHHHHHHHH
T ss_pred             HHHHHHh--cCcEEEecccccccchHHHHHHH
Confidence            9999965  455431    2257999999986

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.65  E-value=0.015  Score=44.29  Aligned_cols=39  Identities=21%  Similarity=0.398  Sum_probs=31.9

Q ss_pred             eEEeeC-----CeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccC
Q 036780           91 IAFTSN-----NGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWN  133 (231)
Q Consensus        91 VA~t~g-----~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~  133 (231)
                      -|++.|     ..|.++...+...+    .+|+.+||.||+.|+-+++
T Consensus        55 NAf~~g~~~~~~~i~v~~gLl~~l~----~~El~aVlaHElgH~~~~h   98 (107)
T 3cqb_A           55 NAFATGAKRDDSLVAVSTGLLHNMT----RDEAEAVLAHEVSHIANGD   98 (107)
T ss_dssp             EEEEECCC--CCEEEEEHHHHHHSC----HHHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEecCCCCCEEEEcHHHHhhCC----HHHHHHHHHHHHHHHHCCC
Confidence            577765     35999999998874    4599999999999998764

>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*

Probab=95.41  E-value=0.04  Score=54.89  Aligned_cols=171  Identities=19%  Similarity=0.369  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEE-eccCCCceEEeeCCeEEEcchhh-hc-CCchhhhhHHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFI-DDMKPGEIAFTSNNGIHYGDDFI-QN-IPVDLIKQEFSGVMYH  124 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l-~d~~~~GVA~t~g~~I~~s~~~i-~~-~~~d~~~~ei~Gvl~H  124 (231)
                      +++.++...+..+.+..|..+-     |..+..++. .++  ..-|.-.-+-|.+...++ -+ .+.+.-+..+..|+.|
T Consensus       193 ~~al~~~~~~l~~~e~~fg~~Y-----P~~k~d~v~vpdf--~~GaMEn~glit~~e~~ll~~~~~~~~~~~~~~~viaH  265 (780)
T 1z5h_A          193 KYPLDMARKSVEFYENYFGIPY-----ALPKMHLISVPEF--GAGAMENWGAITFREIYMDIAENSAVTVKRNSANVIAH  265 (780)
T ss_dssp             SHHHHHHHHHHHHHHHHHSSCC-----SSSEEEEEEETTC--TTCEECCTTEEEEEHHHHSCCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC-----CCccCCEEEcCCC--CCCcccccCeeEeecceEeecCCCCHHHHHHHHHHHHH
Confidence            4566677778888888885333     334555543 344  323333334566665443 22 2223346678899999


Q ss_pred             hhhhhhccCCCCC----CCCcchhhhHHHHHHHhhC-cCCCCC----------------------CC--------CCC-C
Q 036780          125 EMTHVWQWNGNNA----PNIGWLIEGIADFVRLKAN-YVPEGW----------------------AK--------PGE-G  168 (231)
Q Consensus       125 E~~Hv~Q~~~~g~----~aP~~liEGIADyVRl~ag-~~~~~w----------------------~~--------p~~-g  168 (231)
                      |++|-|  .|+-.    ..--||-||+|.|.-..+- ..-+.|                      ..        |.+ .
T Consensus       266 ElaHqW--fGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~~~~  343 (780)
T 1z5h_A          266 EIAHQW--FGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEIS  343 (780)
T ss_dssp             HHHHTT--BTTTEEESSGGGHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHTHHHHHHHTTSTTCCCSCCCCCSSCCTT
T ss_pred             HHHHHH--hCCccccCCcccccccHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccCCCCceecCCCHHHHH
Confidence            999955  56543    0235899999999854310 000001                      01        111 1


Q ss_pred             CCcc-cCcchhHhHHHHHHhc-cCC-cHHHHHHHHHhc-cCC----HHH---HHHHhCCCHHHHHHHHHHH
Q 036780          169 TMWN-QGHSSVAARFLDYCND-LRN-GFVAELNKKMRD-GYN----DNF---FMELLGKSIDQLWNDYKAK  228 (231)
Q Consensus       169 ~~wd-~gY~~~TA~FL~wle~-~~~-gfV~~LN~~mr~-~ys----~~~---~~~~~G~~v~~LW~eY~~~  228 (231)
                      ..++ -.| .-.|-+|.-|+. .++ .|-+-|..=++. .|.    +++   +.+..|++++++++.|-..
T Consensus       344 ~~fd~i~Y-~KGa~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~~t~~Dl~~~l~~~sg~dl~~~~~~W~~~  413 (780)
T 1z5h_A          344 QIFDEISY-GKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSGKPVKRVMEYWIKN  413 (780)
T ss_dssp             TTSCHHHH-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHCSCHHHHHHHHHHS
T ss_pred             Hhcchhhh-hhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            1122 346 678888988883 443 344444444432 232    344   4566899999999988654

>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*

Probab=95.13  E-value=0.087  Score=54.01  Aligned_cols=97  Identities=29%  Similarity=0.378  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhh---cCCchhhhhHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQ---NIPVDLIKQEFSGVMY  123 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~---~~~~d~~~~ei~Gvl~  123 (231)
                      +++.++...+..+.+..|..+=     |..+..++ +.++  ..-|.-.-+-|.+...++-   +.+...-+..+..|+.
T Consensus       297 ~~al~~~~~~l~~~e~~fg~~Y-----P~~k~d~v~vPdf--~~GaMEn~Glity~e~~ll~d~~~s~~~~k~~~~~vIa  369 (967)
T 3se6_A          297 HYALQASLKLLDFYEKYFDIYY-----PLSKLDLIAIPDF--APGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIA  369 (967)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCC-----CSSEEEEEEESSC--SSSEECCTTEEEEEGGGTCCCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-----CcccccEEEecCC--CCcccccCCccccchhheecCcccCCHHhhHhHHHHHH
Confidence            4666777778888888885332     23344444 3454  2224433457777776652   1122224667889999


Q ss_pred             HhhhhhhccCCCCC----CCCcchhhhHHHHHHH
Q 036780          124 HEMTHVWQWNGNNA----PNIGWLIEGIADFVRL  153 (231)
Q Consensus       124 HE~~Hv~Q~~~~g~----~aP~~liEGIADyVRl  153 (231)
                      ||++|-  |-|+-.    ..--||-||+|.|+-.
T Consensus       370 HElAHq--WFGnlVT~~wW~dlWLnEGFAty~e~  401 (967)
T 3se6_A          370 HELAHQ--WFGNLVTMEWWNDIWLNEGFAKYMEL  401 (967)
T ss_dssp             HHHGGG--TBTTTEEESSGGGTHHHHHHHHHHHH
T ss_pred             HHHHHH--HhcCccccCCCccccHHHHHHHHHHH
Confidence            999995  455542    1335899999999865

>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*

Probab=94.91  E-value=0.083  Score=53.48  Aligned_cols=98  Identities=23%  Similarity=0.347  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhh---cCCchhhhhHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQ---NIPVDLIKQEFSGVMY  123 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~---~~~~d~~~~ei~Gvl~  123 (231)
                      .+|.++...+..+.+..|..+=     |..+..++ +.++  ..-|.-.=+-|.+...++-   +.+...-+..+..|+.
T Consensus       249 ~~al~~~~~~l~~~e~~~~~~Y-----p~~k~d~v~vpdf--~~gaMEn~glit~~e~~ll~d~~~s~~~~~~~~~~via  321 (909)
T 4fke_A          249 MYALNVTGPILNFFANHYNTSY-----PLPKSDQIALPDF--NAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIA  321 (909)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCC-----SSSEEEEEEETTC--TTCEECCTTEEEEEHHHHCCCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCC-----CCCcccEEEecCC--CCcccccCcccccccceeecCcccCChHHHHHHHHHHH
Confidence            3566777777888877764332     33344443 3344  3234333347777776662   2222335777889999


Q ss_pred             HhhhhhhccCCCCC----CCCcchhhhHHHHHHHh
Q 036780          124 HEMTHVWQWNGNNA----PNIGWLIEGIADFVRLK  154 (231)
Q Consensus       124 HE~~Hv~Q~~~~g~----~aP~~liEGIADyVRl~  154 (231)
                      |||+|-|  -|+-.    ..--||-||.|.|+-..
T Consensus       322 HElAHqW--FGnlVT~~~W~dlWLnEGFAty~e~~  354 (909)
T 4fke_A          322 HELAHQW--FGNLVTLAWWNDLWLNEGFASYVEYL  354 (909)
T ss_dssp             HHHHTTT--BTTTEEESSGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhhh--hcCeecccccCcceeehHHHHHHHHH
Confidence            9999955  45543    12357999999998553

>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*

Probab=94.40  E-value=0.14  Score=52.23  Aligned_cols=95  Identities=17%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEE-EeccCCCceEEeeCCeEEEcchhhhcCC---chhhhhHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLF-IDDMKPGEIAFTSNNGIHYGDDFIQNIP---VDLIKQEFSGVMY  123 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~-l~d~~~~GVA~t~g~~I~~s~~~i~~~~---~d~~~~ei~Gvl~  123 (231)
                      +++.+++..+..+.+..|..+=|     ..+..++ +.+++ .| |.-.-+-|.|+..++-..+   .+.-+..+..|+.
T Consensus       228 ~~al~~~~~~l~~~e~~fG~pYP-----~~kyd~VavPdF~-~G-aMEN~GLvtf~e~~lL~~~~~~t~~~~~~i~~vIA  300 (889)
T 3ebh_A          228 QWALECLKKSMAFDEDYFGLEYD-----LSRLNLVAVSDFN-VG-AMENKGLNIFNANSLLASKKNSIDFSYARILTVVG  300 (889)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCC-----SSEEEEEEESCCS-SS-EECCTTEEEEEGGGTCCCTTTSCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC-----CCceEEEEecccc-ch-hhcCCceeEecccccccCcccCcHHHHHHHHHHHH
Confidence            45667777788888888853322     3344444 34442 12 4433446777777663222   2323456789999


Q ss_pred             HhhhhhhccCCCCCC----CCcchhhhHHHHH
Q 036780          124 HEMTHVWQWNGNNAP----NIGWLIEGIADFV  151 (231)
Q Consensus       124 HE~~Hv~Q~~~~g~~----aP~~liEGIADyV  151 (231)
                      ||++|-|  -|+-..    .--||-||+|.|.
T Consensus       301 HElAHQW--FGNlVT~~~W~dlWLnEGFAtY~  330 (889)
T 3ebh_A          301 HEYFHQY--TGNRVTLRDWFQLTLKEGLTVHR  330 (889)
T ss_dssp             HHHHTTT--BTTTBEESSGGGHHHHHHHHHHH
T ss_pred             HHHHHHH--hcCeeeecccccceeeHHHHHHH
Confidence            9999965  455431    2357999999986

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=94.32  E-value=0.18  Score=48.96  Aligned_cols=150  Identities=14%  Similarity=0.183  Sum_probs=80.8

Q ss_pred             CCCeEEEEEe--ccCCCceEEeeCCeEEEcchhhhcC--C-chhhhhHHHHHHHHhhhhhhccCCCCCC-----------
Q 036780           75 NIPQVDLFID--DMKPGEIAFTSNNGIHYGDDFIQNI--P-VDLIKQEFSGVMYHEMTHVWQWNGNNAP-----------  138 (231)
Q Consensus        75 ~v~~Vtl~l~--d~~~~GVA~t~g~~I~~s~~~i~~~--~-~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~~-----------  138 (231)
                      |..+-.+++.  +..+.|........|.++..-+...  . .+.-...+.+++.||+.|.|-  ++...           
T Consensus       219 P~~~Y~fl~~~~~~~~GgmEh~~st~l~~~~~~l~~~~~~~~~~~~~~~~~liaHE~~H~W~--g~~i~p~~~~~~d~~~  296 (597)
T 4fgm_A          219 PFQSYTFLTMVVGNGFGGLEHRNSTALLCSRKDLISAHQYEMNDNYQTFLSLCCHEYFHSWN--IKTLKPKAFLPYQLEK  296 (597)
T ss_dssp             SCSEEEEEEEEESSCCEEEECSSEEEEEEEGGGSCCTTCCSCCHHHHHHHHHHHHHHHHTTB--TTTBCBGGGSSCCCSS
T ss_pred             CCCceEEEEEccCCCCcccccCCceEEEeCchhccccccccchhhhhchhhhHhhhhheeec--cccccccccccccccc
Confidence            5566666543  3222344444344677776644211  0 111234567999999999774  54330           


Q ss_pred             ----CCcchhhhHHHHHHH----hhCcCCCCC-------------CCCCC---------CCCcc--------------cC
Q 036780          139 ----NIGWLIEGIADFVRL----KANYVPEGW-------------AKPGE---------GTMWN--------------QG  174 (231)
Q Consensus       139 ----aP~~liEGIADyVRl----~ag~~~~~w-------------~~p~~---------g~~wd--------------~g  174 (231)
                          .--||-||++.|.-.    ++|.....-             ..|+.         -+.|.              .-
T Consensus       297 ~~~~~~lWl~EG~t~Y~~~l~~~r~G~~~~~~~~~~l~~~i~~~~~~~gr~~~sl~~ss~~aw~~~yr~~~n~~n~~~s~  376 (597)
T 4fgm_A          297 ESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKLLGDTLSRVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSY  376 (597)
T ss_dssp             CCCCSTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSGGGGTCCHHHHHHTCCCCCTTCCTTHHHHCCCT
T ss_pred             ccccccchhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCccccChHHcCchhhhccccCCcccCCccccc
Confidence                235999999998742    444321000             01110         01121              33


Q ss_pred             cchhHhHHHHHHh----cc---CC---cHHHHHHHHHhc---cCCHH----HHHHHhCCCHHHHHHHHHH
Q 036780          175 HSSVAARFLDYCN----DL---RN---GFVAELNKKMRD---GYNDN----FFMELLGKSIDQLWNDYKA  227 (231)
Q Consensus       175 Y~~~TA~FL~wle----~~---~~---gfV~~LN~~mr~---~ys~~----~~~~~~G~~v~~LW~eY~~  227 (231)
                      | .-.|-++.-|+    ..   ++   .+++.|.+.-+.   +++.+    .+.++.|.+.++++++|..
T Consensus       377 Y-~KGalv~~~LD~~lR~~s~g~~sldd~mr~l~~~~~~~~~~~t~~d~~~~~e~~sG~dl~~ff~~~l~  445 (597)
T 4fgm_A          377 Y-AKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTSIGTADDTVINWLNQYPGIDISDFLKDALY  445 (597)
T ss_dssp             T-HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHTTTTCCBCTTHHHHHHHTSTTCCCHHHHHHHHH
T ss_pred             c-hHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHhcCcCHHHHHHHHHh
Confidence            6 56666654433    22   12   357777766542   36653    3566789999999999865

>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...

Probab=94.31  E-value=0.062  Score=51.92  Aligned_cols=49  Identities=24%  Similarity=0.392  Sum_probs=33.8

Q ss_pred             CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCCCCC----CCCcchhhhHHHHHH
Q 036780           96 NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNGNNA----PNIGWLIEGIADFVR  152 (231)
Q Consensus        96 g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~~g~----~aP~~liEGIADyVR  152 (231)
                      .+-|.+++.++..-.      .+..|+.||++|-|  -|+-.    ..--||-||+|.|+-
T Consensus       271 ~gl~~~~~~~l~~~~------~~~~viaHElAHqW--fGnlVT~~~W~d~WLnEGfAty~e  323 (608)
T 3u9w_A          271 PCLTFVTPTLLAGDK------SLSNVIAHEISHSW--TGNLVTNKTWDHFWLNEGHTVYLE  323 (608)
T ss_dssp             TTEEEECGGGCCSSS------TTTHHHHHHHHTTT--BTTTEEESSGGGHHHHHHHHHHHH
T ss_pred             Ccceeeeeeeecccc------hhHHHHHHHhhhhh--hcCcCccccccchhHHHhHHHHHH
Confidence            456777777765432      25679999999965  45432    133589999999974

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=93.96  E-value=0.089  Score=45.44  Aligned_cols=41  Identities=22%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             eEEee-CCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhhccCC
Q 036780           91 IAFTS-NNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus        91 VA~t~-g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      -|++. |+.|.++...+.....   .+|+.+||.||+.|+-+...
T Consensus        75 NAfa~~gg~I~v~~gLl~~l~~---~~ELaaVLaHElgH~~~~H~  116 (253)
T 3c37_A           75 NAFAIPGGRVYVHTGLLKAADN---ETELAGVLAHEINHAVARHG  116 (253)
T ss_dssp             CEEEETTTEEEEEHHHHHHCSS---HHHHHHHHHHHHHHHHTTHH
T ss_pred             CeeEcCCCeEEeeHHHHhhCCC---HHHHHHHHHHHHHHHHCcCH
Confidence            46654 6799999999987731   36999999999999987543

>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}

Probab=93.81  E-value=0.11  Score=50.05  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCeEEEEEe--ccCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhh
Q 036780           53 TMTAATDFIWRLFQQNTEADRKNIPQVDLFID--DMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVW  130 (231)
Q Consensus        53 vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~--d~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~  130 (231)
                      .+..+..+.+.+|. +  -   |..+..+++-  ++...|....  +-+..++..+.+   +   .++.+|+.||++|-|
T Consensus       241 ~~~~~l~~~e~~fG-~--Y---P~~k~d~v~~p~~f~~GgMEn~--gltf~~~~ll~~---~---~~~~~viaHElaHqW  306 (605)
T 3cia_A          241 DTQAMIDKAEQMYG-K--Y---RWGRYDLLMLPPSFPFGGMENP--RLSFITPTVVAG---D---KSLVNLIAHELAHSW  306 (605)
T ss_dssp             THHHHHHHHHHHHC-C--C---TTSCEEEEECCTTCSSSEECCT--TEEEECGGGCCS---S---SCSTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC-C--C---CCccccEEEECCccCCCcccCC--cEEEecchhccC---c---HHHHHHHHHHHHHHh
Confidence            44556677777774 2  2   3445666542  4422222221  233344444432   1   135689999999965


Q ss_pred             ccCCCCC----CCCcchhhhHHHHHH
Q 036780          131 QWNGNNA----PNIGWLIEGIADFVR  152 (231)
Q Consensus       131 Q~~~~g~----~aP~~liEGIADyVR  152 (231)
                        .|+-.    ..--||-||+|.|.-
T Consensus       307 --fGnlVT~~~W~dlWLnEGfAtY~e  330 (605)
T 3cia_A          307 --SGNLVTNESWRDLWLNEGFTSYVE  330 (605)
T ss_dssp             --BTTTEEESSTTSTHHHHHHHHHHH
T ss_pred             --hccccccCcchHhHHHHHHHHHHH
Confidence              45543    133689999999973

>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*

Probab=93.46  E-value=0.28  Score=49.91  Aligned_cols=95  Identities=17%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEE-eccCCCceEEeeCCeEEEcchhhhcC---CchhhhhHHHHHHH
Q 036780           48 EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFI-DDMKPGEIAFTSNNGIHYGDDFIQNI---PVDLIKQEFSGVMY  123 (231)
Q Consensus        48 ~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l-~d~~~~GVA~t~g~~I~~s~~~i~~~---~~d~~~~ei~Gvl~  123 (231)
                      +++.+.+..+..+.+..|..+-     |..+..++. .++  ..-|.-.-+-|.|+..++-..   ..+.-...+..|+.
T Consensus       245 ~~al~~~~~~l~~~e~~fG~pY-----P~~k~diVavPdf--~~GaMEn~GLitf~e~~lL~~~~~~t~~~~~~i~~vIA  317 (891)
T 3b34_A          245 PWAMTSLKNSMKWDEERFGLEY-----DLDIYMIVAVDFF--NMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIG  317 (891)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCC-----CSSEEEEEEESCC--SSSEECCTTEEEEEGGGTCCCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCC-----CCcceeEEEcCCC--CcCccccCceeEecccccccCcccCcHHHHHHHHHHHH
Confidence            4566677778888888885322     344555543 344  212443345666776665322   22323567789999


Q ss_pred             HhhhhhhccCCCCCCC----CcchhhhHHHHH
Q 036780          124 HEMTHVWQWNGNNAPN----IGWLIEGIADFV  151 (231)
Q Consensus       124 HE~~Hv~Q~~~~g~~a----P~~liEGIADyV  151 (231)
                      ||++|-|  -|+-..+    --||-||+|.|.
T Consensus       318 HElAHqW--FGNlVT~~~W~dlWLnEGFAtY~  347 (891)
T 3b34_A          318 HEYFHNW--TGNRVTCRDWFQLSLKEGLTVFR  347 (891)
T ss_dssp             HHHHTTT--BTTTEEESSGGGHHHHHHHHHHH
T ss_pred             HHHHHHH--hCCCCcccchhhceehHHHHHHH
Confidence            9999965  4554312    236999999886

>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*

Probab=87.72  E-value=1  Score=43.63  Aligned_cols=84  Identities=21%  Similarity=0.328  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCeEEEEE--eccCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhhh
Q 036780           53 TMTAATDFIWRLFQQNTEADRKNIPQVDLFI--DDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHVW  130 (231)
Q Consensus        53 vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l--~d~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv~  130 (231)
                      .+..+..+.+.+|.   |-|   ..+..+++  .++...|.... | -+.+++..+..   |   .++..|+.||++|-|
T Consensus       242 ~~~~~l~~~e~~fG---pYP---~~k~d~v~~pp~f~~GgMEn~-g-lt~~~~~ll~~---~---~~~~~viaHElAHqW  307 (632)
T 2xq0_A          242 DVEKFIQTAEKIIF---EYE---WGTYDILVNVDSYPYGGMESP-N-MTFATPTLLAH---D---RSNIDVIAHELAHSW  307 (632)
T ss_dssp             THHHHHHHHHHHSC---CCC---SSCCCEEECCTTCCSSEECCT-T-CEEECGGGCCS---S---SCSTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcc---cCC---cccccEEEECCCCCCCccccc-e-EEEeeceeccC---c---hhHHHHHHHHHHHHH
Confidence            44456677777774   222   23344433  24322222221 2 34455554432   1   135689999999965


Q ss_pred             ccCCCCC----CCCcchhhhHHHHHH
Q 036780          131 QWNGNNA----PNIGWLIEGIADFVR  152 (231)
Q Consensus       131 Q~~~~g~----~aP~~liEGIADyVR  152 (231)
                        -|+-.    ..--||-||+|.|.-
T Consensus       308 --fGnlVT~~~W~dlWLnEGfAtY~e  331 (632)
T 2xq0_A          308 --SGNLVTNCSWNHFWLNEGWTVYLE  331 (632)
T ss_dssp             --BTTTEEESSGGGTHHHHHHHHHHH
T ss_pred             --hcCCCccCCcchhhHHHHHHHHHH
Confidence              45433    123589999999984

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A

Probab=82.29  E-value=0.67  Score=44.15  Aligned_cols=20  Identities=25%  Similarity=0.210  Sum_probs=17.7

Q ss_pred             hhHHHHHHHHhhhhhhccCC
Q 036780          115 KQEFSGVMYHEMTHVWQWNG  134 (231)
Q Consensus       115 ~~ei~Gvl~HE~~Hv~Q~~~  134 (231)
                      .+|+.+||.||+.|+-.++-
T Consensus       326 ~~El~aVlaHElgH~~~~~~  345 (482)
T 4aw6_A          326 NEEVLAVLGHELGHWKLGHT  345 (482)
T ss_dssp             HHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHcccH
Confidence            68999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d3b7sa3	252	Leukotriene A4 hydrolase catalytic domain {Human (	96.35
d1eb6a_	177	Fungal zinc peptidase {Aspergillus oryzae, deutero	84.03
d1bqba_	301	Aureolysin {Staphylococcus aureus [TaxId: 1280]}	82.68

>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0043  Score=50.52  Aligned_cols=86  Identities=17%  Similarity=0.208  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCeEEEEE--eccCCCceEEeeCCeEEEcchhhhcCCchhhhhHHHHHHHHhhhhh
Q 036780           52 QTMTAATDFIWRLFQQNTEADRKNIPQVDLFI--DDMKPGEIAFTSNNGIHYGDDFIQNIPVDLIKQEFSGVMYHEMTHV  129 (231)
Q Consensus        52 ~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l--~d~~~~GVA~t~g~~I~~s~~~i~~~~~d~~~~ei~Gvl~HE~~Hv  129 (231)
                      +...++..+.+..|. +-     |..+..++.  .++  +.-+.-..+-|.++...+.+..      .+..++.||++|-
T Consensus        27 ~~~~~~l~~~e~~~g-~Y-----P~~k~d~v~~~~~~--~~ggmE~~~l~~~~~~~~~~~~------~~~~~iaHE~aHq   92 (252)
T d3b7sa3          27 SETESMLKIAEDLGG-PY-----VWGQYDLLVLPPSF--PYGGMENPCLTFVTPTLLAGDK------SLSNVIAHQISHS   92 (252)
T ss_dssp             TTHHHHHHHHHHHHC-CC-----CSSCCEEEECCTTC--SSSEECCTTEEEECGGGCCSSS------TTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCC-CC-----CchhcCEEEeCCCc--cccccccceeeeecchhccccc------hHHHHHHHHHHHH
Confidence            334455666676652 22     334454433  233  2223333556777777654321      2457999999996


Q ss_pred             hccCCCCCC----CCcchhhhHHHHHHH
Q 036780          130 WQWNGNNAP----NIGWLIEGIADFVRL  153 (231)
Q Consensus       130 ~Q~~~~g~~----aP~~liEGIADyVRl  153 (231)
                      |  -|+-..    .--||-||+|.|.-.
T Consensus        93 W--fG~~Vt~~~w~~~WL~EG~a~y~~~  118 (252)
T d3b7sa3          93 W--TGNLVTNKTWDHFWLNEGHTVYLER  118 (252)
T ss_dssp             T--BTTTEEESSGGGHHHHHHHHHHHHH
T ss_pred             H--HhhhceeccccchHhhccHHHHHHH
Confidence            6  344321    224799999999853

>d1eb6a_ d.92.1.12 (A:) Fungal zinc peptidase {Aspergillus oryzae, deuterolysin [TaxId: 5062]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Fungal zinc peptidase
domain: Fungal zinc peptidase
species: Aspergillus oryzae, deuterolysin [TaxId: 5062]

Probab=84.03  E-value=1.4  Score=34.33  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             cchhHhhhhch--HHHHHHHHHHHHHHHHHhccCCCCCCCCCCeEEEEEecc----CCCceEEeeC--CeEEEcchhhhc
Q 036780           37 GGMRFDKEIGA--EYAKQTMTAATDFIWRLFQQNTEADRKNIPQVDLFIDDM----KPGEIAFTSN--NGIHYGDDFIQN  108 (231)
Q Consensus        37 gg~rF~~~i~~--~~a~~vl~~A~~~v~~~l~~~~~~~r~~v~~Vtl~l~d~----~~~GVA~t~g--~~I~~s~~~i~~  108 (231)
                      .+.+|.+-+|.  ....+.+.....-|.+....   .++   .++++.-+|.    +.++.|||..  ++|++-|.+...
T Consensus        36 ~~~~~~~yFgt~~~~~~~~V~~~f~~I~~e~~s---~~~---g~~~~~C~d~~~~C~~~~~Ayt~~~~~~i~~Cp~ff~~  109 (177)
T d1eb6a_          36 DESKFEEYFKTTDQQTRTTVAERLRAVAKEAGS---TSG---GSTTYHCNDPYGYCEPNVLAYTLPSKNEIANCDIYYSE  109 (177)
T ss_dssp             CHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC---SBC---SSCEEESSCSSSCCCTTCCEEEEGGGTEEEECHHHHHH
T ss_pred             CcHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc---CCC---CceEEEeCCCCCCcCCCCceeecCCCCeEEECcchhcc
Confidence            34688888863  22223333333333322211   111   2466665543    1234688754  489999998864


Q ss_pred             CCc---hhhhhHHHHHHHHhhhhhhc
Q 036780          109 IPV---DLIKQEFSGVMYHEMTHVWQ  131 (231)
Q Consensus       109 ~~~---d~~~~ei~Gvl~HE~~Hv~Q  131 (231)
                      .+.   ..-..--.++|.|||+|.-+
T Consensus       110 ~~~~~~~c~~~~~a~tllHE~~H~~~  135 (177)
T d1eb6a_         110 LPPLAQKCHAQDQATTTLHEFTHAPG  135 (177)
T ss_dssp             CCSSCCSTTCCCHHHHHHHHHHTCTT
T ss_pred             CCccccccCCCchhHHHHHHHhhhhh
Confidence            431   00011135899999999743

>d1bqba_ d.92.1.2 (A:) Aureolysin {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Thermolysin-like
domain: Aureolysin
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.68  E-value=0.16  Score=43.12  Aligned_cols=36  Identities=28%  Similarity=0.254  Sum_probs=27.6

Q ss_pred             HHHHHhhhhhhccCCCC-C--CCCcchhhhHHHHHHHhh
Q 036780          120 GVMYHEMTHVWQWNGNN-A--PNIGWLIEGIADFVRLKA  155 (231)
Q Consensus       120 Gvl~HE~~Hv~Q~~~~g-~--~aP~~liEGIADyVRl~a  155 (231)
                      +|+.||++|-+...-.+ .  +-+++|=||++|+.....
T Consensus       140 DVv~HE~~HGvt~~~~~l~y~~esGalnEg~sDi~g~~~  178 (301)
T d1bqba_         140 DVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYFV  178 (301)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhheeccccCcccccCccchhhHHHHHHHHHh
Confidence            79999999999653222 1  146899999999998754